Citrus Sinensis ID: 039792
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 819 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SVA5 | 834 | Pentatricopeptide repeat- | yes | no | 0.896 | 0.880 | 0.555 | 0.0 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.854 | 0.806 | 0.350 | 1e-121 | |
| Q9FWA6 | 903 | Pentatricopeptide repeat- | no | no | 0.877 | 0.796 | 0.322 | 1e-120 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.905 | 0.697 | 0.313 | 1e-117 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.863 | 0.794 | 0.329 | 1e-114 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.804 | 0.775 | 0.346 | 1e-112 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.780 | 0.789 | 0.338 | 1e-110 | |
| Q9STE1 | 857 | Pentatricopeptide repeat- | no | no | 0.901 | 0.861 | 0.309 | 1e-110 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.798 | 0.750 | 0.333 | 1e-110 | |
| P93005 | 727 | Pentatricopeptide repeat- | no | no | 0.748 | 0.843 | 0.350 | 1e-109 |
| >sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/770 (55%), Positives = 564/770 (73%), Gaps = 36/770 (4%)
Query: 74 VHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGY 133
VH QI + GL+ DT+L+N+L+ YS+A + ARK+F+ M ERNLVSWS++VS G
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125
Query: 134 GEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDV 193
EE+L+VF+ F + P++YILSS I AC+ L G G + Q+ SF++KSGFDRDV
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRW--MVFQLQSFLVKSGFDRDV 183
Query: 194 YVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRET 253
YVGT L++ Y K+G++D A+ VFD L K+ V+WTT+I+G VK GRS +SL LF Q+ E
Sbjct: 184 YVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMED 243
Query: 254 DVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMA 313
+VV D Y+LS+VLSACS+L F+ GGKQIHAH+LR G+ MD S++NVL+D Y KCGRV A
Sbjct: 244 NVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAA 303
Query: 314 RRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSV 373
+LF+ + KNIISWTTL+ GY QN+ +EAM+LFT M++ G KPD +ACSS+LTSC S+
Sbjct: 304 HKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASL 363
Query: 374 EALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMI 433
AL G QVHAY+ KAN+ +D++V NSL+DMYAKCD LT+ARKVFD+ A +VV +NAMI
Sbjct: 364 HALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMI 423
Query: 434 EGYSK---EEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY 490
EGYS+ + +L EAL++F +MR + P LLTFVSLL S+S+ SL SKQIHGL+ KY
Sbjct: 424 EGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKY 483
Query: 491 GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLY 550
G+ LD+FAGSALID YS C+ KD+RLVFDEM +D+V+WN+M GY QQ ENEEA+ L+
Sbjct: 484 GLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLF 543
Query: 551 LELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC 610
LEL LS++RP+EFTFA ++TAA NL S++ GQ+FH L+K GL+ + +IT+AL+DMYAKC
Sbjct: 544 LELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKC 603
Query: 611 GSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVL 670
GS EDA++ F S +DV CWNS+I + A+HGE KAL + +M+ EG+EPNYITFVGVL
Sbjct: 604 GSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVL 663
Query: 671 SACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN------------------- 711
SACSHAGL+EDGL F+ M FGIEP EHY +VSLLGR
Sbjct: 664 SACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAA 723
Query: 712 -VW-----------NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759
VW NVEL +AAEMAI DP DSGS+T+LSN +A MW +AK+VR++M
Sbjct: 724 IVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERM 783
Query: 760 DLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKGV 809
++G++KE GRSWI +N EVH F+++DKSH A+ Y +LD+L++ I+GV
Sbjct: 784 KVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLLVQIRGV 833
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 436 bits (1120), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/753 (35%), Positives = 409/753 (54%), Gaps = 53/753 (7%)
Query: 103 LDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVI- 161
L A LFD R+ S+ SL+ +++ G +EA +F+ ++G D I SSV+
Sbjct: 43 LYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGM-EMDCSIFSSVLK 101
Query: 162 ---CACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDG 218
C +L G Q+H IK GF DV VGTSL++ Y K + D + VFD
Sbjct: 102 VSATLCDEL--------FGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDE 153
Query: 219 LMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGG 278
+ + V+WTT+I+GY ++ +D L LF +M+ + + ++ L + G G
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213
Query: 279 KQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQN 338
Q+H V++ G+ + V N L++ Y KCG V+ AR LFD+ EVK++++W ++I GY N
Sbjct: 214 LQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 273
Query: 339 SFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVK 398
D EA+ +F M + + + + +SV+ C +++ L Q+H K D ++
Sbjct: 274 GLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR 333
Query: 399 NSLVDMYAKCDSLTEARKVF-DVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFV 457
+L+ Y+KC ++ +A ++F ++ NVVS+ AMI G+ + + EA+DLF EM+ V
Sbjct: 334 TALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGV 393
Query: 458 PPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARL 517
P T+ +L + + S ++H ++K G+AL+DAY K ++A
Sbjct: 394 RPNEFTYSVIL----TALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAK 449
Query: 518 VFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAAL--ITAASNL 575
VF ++ +DIV W+AML GY Q E E AIK++ EL +PNEFTF+++ + AA+N
Sbjct: 450 VFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATN- 508
Query: 576 GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMI 635
S+ G+QFH IK LD ++SAL+ MYAK G++E A E F KD+ WNSMI
Sbjct: 509 ASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMI 568
Query: 636 CTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMA-GFGI 694
A HG+ MKAL +F+EM ++ + +TF+GV +AC+HAGL+E+G +F M I
Sbjct: 569 SGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKI 628
Query: 695 EPGMEHYASVVSLLGR--------------------NVW-----------NVELGRYAAE 723
P EH + +V L R +W ELGR AAE
Sbjct: 629 APTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAE 688
Query: 724 MAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFV 783
I++ P DS +Y LLSN +A + W + +VRK M+ + KE G SWIEV N+ ++F+
Sbjct: 689 KIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFL 748
Query: 784 ARDKSHHAADLTYSILDNLILHIKGVGYVPNTS 816
A D+SH D Y L++L +K +GY P+TS
Sbjct: 749 AGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTS 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 263/815 (32%), Positives = 419/815 (51%), Gaps = 96/815 (11%)
Query: 72 KQVHAQIAISGLQCDTFLANMLLR-------------------------------NYSKA 100
KQ HA + ISG + TF+ N LL+ YSK+
Sbjct: 68 KQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKS 127
Query: 101 NDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVG---NGRPDDYIL 157
ND+ A F+ M R++VSW+S++S Y + G +++ VF+ + G +GR IL
Sbjct: 128 NDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIIL 187
Query: 158 SSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFD 217
C+ L + ++G Q+H V++ G D DV ++L+++YAK ++ VF
Sbjct: 188 K----VCSFL----EDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQ 239
Query: 218 GLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGG 277
G+ K +VSW+ II G V++ L+L F +M++ + + + +SVL +C+ L +
Sbjct: 240 GIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRL 299
Query: 278 GKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQ 337
G Q+HAH L+ D V +D Y+KC ++ A+ LFD E N S+ +I GY Q
Sbjct: 300 GGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQ 359
Query: 338 NSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFV 397
+A+ LF + SG D+ + S V +C V+ L +G Q++ + K+++ D V
Sbjct: 360 EEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCV 419
Query: 398 KNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFV 457
N+ +DMY KC +L EA +VFD M R+ VS+NA+I + + K E L LF M +
Sbjct: 420 ANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRI 479
Query: 458 PPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARL 517
P TF S+L + SL +IH I+K G+ + G +LID YSKC ++A
Sbjct: 480 EPDEFTFGSILKACTGG-SLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEK 538
Query: 518 VFDEMNQRD--------------------IVVWNAMLLGYTQQLENEEAIKLYLELLLSQ 557
+ QR V WN+++ GY + ++E+A L+ ++
Sbjct: 539 IHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMG 598
Query: 558 QRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAY 617
P++FT+A ++ +NL S G+Q H +IK L D +I S L+DMY+KCG L D+
Sbjct: 599 ITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSR 658
Query: 618 ETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAG 677
F + +D WN+MIC AHHG+ +A+ LF MI+E ++PN++TF+ +L AC+H G
Sbjct: 659 LMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMG 718
Query: 678 LIEDGLDHFQSMA-GFGIEPGMEHYASVVSLLGRN--------------------VW--- 713
LI+ GL++F M +G++P + HY+++V +LG++ +W
Sbjct: 719 LIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTL 778
Query: 714 ---------NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGL 764
NVE+ A + +DP DS +YTLLSN +A MW +R+ M L
Sbjct: 779 LGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKL 838
Query: 765 MKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSIL 799
KE G SW+E+ +E+H F+ DK+H + Y L
Sbjct: 839 KKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEEL 873
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 424 bits (1089), Expect = e-117, Method: Compositional matrix adjust.
Identities = 244/779 (31%), Positives = 413/779 (53%), Gaps = 37/779 (4%)
Query: 72 KQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKK 131
+Q+HA+I GL+ T + N L+ YS+ +D AR++FD + ++ SW +++S +K
Sbjct: 207 EQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKN 266
Query: 132 GYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDR 191
EA+ +F +G P Y SSV+ AC ++ + +GEQ+H V+K GF
Sbjct: 267 ECEAEAIRLFCDMYVLGI-MPTPYAFSSVLSACKKI----ESLEIGEQLHGLVLKLGFSS 321
Query: 192 DVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMR 251
D YV +L++LY G++ A+ +F + + AV++ T+I G + G + ++ LF +M
Sbjct: 322 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381
Query: 252 ETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVK 311
+ D L+S++ ACS + G+Q+HA+ + G + + L++ Y+KC ++
Sbjct: 382 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 441
Query: 312 MARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCG 371
A F E EV+N++ W ++ Y R + ++F +M P+ + S+L +C
Sbjct: 442 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 501
Query: 372 SVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNA 431
+ LE G Q+H+ K N + + +V + L+DMYAK L A + A ++VVS+
Sbjct: 502 RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 561
Query: 432 MIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYG 491
MI GY++ +AL F +M + + + + + + +L+ +QIH G
Sbjct: 562 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSG 621
Query: 492 VFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYL 551
D+ +AL+ YS+C +++ L F++ D + WNA++ G+ Q NEEA+++++
Sbjct: 622 FSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFV 681
Query: 552 ELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG 611
+ N FTF + + AAS ++K G+Q H + K G D ++ + +ALI MYAKCG
Sbjct: 682 RMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCG 741
Query: 612 SLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLS 671
S+ DA + F + K+ WN++I + HG +AL F +MI + PN++T VGVLS
Sbjct: 742 SISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLS 801
Query: 672 ACSHAGLIEDGLDHFQSM-AGFGIEPGMEHYASVVSLLGRN------------------- 711
ACSH GL++ G+ +F+SM + +G+ P EHY VV +L R
Sbjct: 802 ACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDA 861
Query: 712 -VW-----------NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759
VW N+E+G +AA + ++P DS +Y LLSN +A + W R+KM
Sbjct: 862 LVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKM 921
Query: 760 DLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKGVGYVPNTSAL 818
G+ KE G+SWIEV N +H+F D++H AD + +L +GYV + +L
Sbjct: 922 KEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSL 980
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 255/774 (32%), Positives = 409/774 (52%), Gaps = 67/774 (8%)
Query: 100 ANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSS 159
A+ + GA +F + S R+ W L+ + EA++ ++ + +G +PD+Y +
Sbjct: 45 ASAVSGAPSIFISQS-RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGI-KPDNYAFPA 102
Query: 160 VICACTQLGGGGDGGNVGEQMHSFVIKSGFDRD-VYVGTSLMNLYAKNGSVDDAKFVFDG 218
++ A L +G+Q+H+ V K G+ D V V +L+NLY K G VFD
Sbjct: 103 LLKAVADL----QDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR 158
Query: 219 LMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGG- 277
+ + VSW ++I+ + +++L F M + +V + L SV++ACS L G
Sbjct: 159 ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGL 218
Query: 278 --GKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGY 335
GKQ+HA+ LR+G ++ +IN L+ Y K G++ ++ L +++++W T++
Sbjct: 219 MMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 277
Query: 336 MQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFK-ANIESD 394
QN EA++ EM G +PD+F SSVL +C +E L G+++HAY+ K +++ +
Sbjct: 278 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 337
Query: 395 NFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRV 454
+FV ++LVDMY C + R+VFD M DR + +NAMI GYS+ E EAL LF M
Sbjct: 338 SFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEE 397
Query: 455 GFVPPGLLTFVSLLG------LSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSK 508
GLL + + + S FS + + IHG ++K G+ D F + L+D YS+
Sbjct: 398 S---AGLLANSTTMAGVVPACVRSGAFSRKEA--IHGFVVKRGLDRDRFVQNTLMDMYSR 452
Query: 509 CFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLY-----LELLLSQQ----- 558
A +F +M RD+V WN M+ GY +E+A+ L LE +S+
Sbjct: 453 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 512
Query: 559 -RPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAY 617
+PN T ++ + + L +L G++ H + IK L D + SAL+DMYAKCG L+ +
Sbjct: 513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572
Query: 618 ETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAG 677
+ F K+V WN +I HG +A+ L R M+++G++PN +TF+ V +ACSH+G
Sbjct: 573 KVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 632
Query: 678 LIEDGLDHFQSM-AGFGIEPGMEHYASVVSLLGR---------------------NVW-- 713
++++GL F M +G+EP +HYA VV LLGR W
Sbjct: 633 MVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 692
Query: 714 ---------NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGL 764
N+E+G AA+ I ++P + Y LL+N ++ +W A +VR+ M G+
Sbjct: 693 LLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752
Query: 765 MKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKGVGYVPNTSAL 818
KE G SWIE +EVH FVA D SH ++ L+ L ++ GYVP+TS +
Sbjct: 753 RKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCV 806
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 245/708 (34%), Positives = 391/708 (55%), Gaps = 49/708 (6%)
Query: 151 RP-DDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSV 209
RP D SS++ +C + +G+ +H+ +I+ + D + SL++LY+K+G
Sbjct: 58 RPMDSVTFSSLLKSCIR----ARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDS 113
Query: 210 DDAKFVFDGLM---VKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVL 266
A+ VF+ + + VSW+ ++ Y +GR ++ +F + E +V + Y ++V+
Sbjct: 114 AKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVI 173
Query: 267 SACSMLQFVGGGKQIHAHVLRRG-MGMDVSVINVLMDFYSKC-GRVKMARRLFDEIEVKN 324
ACS FVG G+ +++ G DV V L+D + K + A ++FD++ N
Sbjct: 174 RACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELN 233
Query: 325 IISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHA 384
+++WT +I MQ F REA++ F +M SG++ D F SSV ++C +E L G+Q+H+
Sbjct: 234 VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHS 293
Query: 385 YSFKANIESDNFVKNSLVDMYAKCD---SLTEARKVFDVMADRNVVSYNAMIEGYSKEEK 441
++ ++ + D V+ SLVDMYAKC S+ + RKVFD M D +V+S+ A+I GY K
Sbjct: 294 WAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCN 351
Query: 442 L-SEALDLFHEMRV-GFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAG 499
L +EA++LF EM G V P TF S ++ KQ+ G K G+ +
Sbjct: 352 LATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVA 411
Query: 500 SALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQR 559
+++I + K +DA+ F+ ++++++V +N L G + L E+A KL E+ +
Sbjct: 412 NSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELG 471
Query: 560 PNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYET 619
+ FTFA+L++ +N+GS++ G+Q H+ ++KLGL + + +ALI MY+KCGS++ A
Sbjct: 472 VSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRV 531
Query: 620 FGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLI 679
F ++V W SMI A HG ++ L F +MI EG++PN +T+V +LSACSH GL+
Sbjct: 532 FNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLV 591
Query: 680 EDGLDHFQSM-AGFGIEPGMEHYASVVSLLGRN--------------------VW----- 713
+G HF SM I+P MEHYA +V LL R VW
Sbjct: 592 SEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLG 651
Query: 714 ------NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKE 767
N ELG+ AA + +DP + +Y LSN +AC W ++ ++R+KM L+KE
Sbjct: 652 ACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKE 711
Query: 768 AGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKGVGYVPNT 815
G SWIEV +++H F D +H A Y LD LI IK GYVP+T
Sbjct: 712 GGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDT 759
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 227/671 (33%), Positives = 362/671 (53%), Gaps = 32/671 (4%)
Query: 178 EQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKS 237
Q+ V K+G ++ + T L++L+ + GSVD+A VF+ + K V + T++ G+ K
Sbjct: 54 RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKV 113
Query: 238 GRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVI 297
D +L F +MR DV Y + +L C + GK+IH +++ G +D+ +
Sbjct: 114 SDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAM 173
Query: 298 NVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWK 357
L + Y+KC +V AR++FD + ++++SW T++ GY QN R A+++ M K
Sbjct: 174 TGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLK 233
Query: 358 PDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKV 417
P SVL + ++ + G+++H Y+ ++ +S + +LVDMYAKC SL AR++
Sbjct: 234 PSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQL 293
Query: 418 FDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSL 477
FD M +RNVVS+N+MI+ Y + E EA+ +F +M V P ++ + L + + L
Sbjct: 294 FDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDL 353
Query: 478 ESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGY 537
E + IH L ++ G+ +V ++LI Y KC A +F ++ R +V WNAM+LG+
Sbjct: 354 ERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGF 413
Query: 538 TQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDS 597
Q +A+ + ++ +P+ FT+ ++ITA + L H + H +++ LD +
Sbjct: 414 AQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNV 473
Query: 598 FITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIE 657
F+T+AL+DMYAKCG++ A F + + V WN+MI HG AL LF EM
Sbjct: 474 FVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKG 533
Query: 658 GLEPNYITFVGVLSACSHAGLIEDGLDHFQSMA-GFGIEPGMEHYASVVSLLGR------ 710
++PN +TF+ V+SACSH+GL+E GL F M + IE M+HY ++V LLGR
Sbjct: 534 TIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNE 593
Query: 711 --------------NVW-----------NVELGRYAAEMAISIDPMDSGSYTLLSNTFAC 745
NV+ NV AAE ++P D G + LL+N +
Sbjct: 594 AWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRA 653
Query: 746 NSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILH 805
SMW QVR M GL K G S +E+ NEVH+F + +H + Y+ L+ LI H
Sbjct: 654 ASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICH 713
Query: 806 IKGVGYVPNTS 816
IK GYVP+T+
Sbjct: 714 IKEAGYVPDTN 724
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust.
Identities = 241/778 (30%), Positives = 393/778 (50%), Gaps = 40/778 (5%)
Query: 72 KQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSER--NLVSWSSLVSMYT 129
KQVHA + ++ + D++ +L Y+ K+F + R ++ W+S++S +
Sbjct: 55 KQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFV 114
Query: 130 KKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGF 189
+ G +AL + L G PD ++ AC L + + + S G
Sbjct: 115 RNGLLNQALAFYFKMLCFGVS-PDVSTFPCLVKACVALKNFKGIDFLSDTVSSL----GM 169
Query: 190 DRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQ 249
D + +V +SL+ Y + G +D +FD ++ K V W ++ GY K G D + F+
Sbjct: 170 DCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSV 229
Query: 250 MRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGR 309
MR + + VLS C+ + G Q+H V+ G+ + S+ N L+ YSKCGR
Sbjct: 230 MRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGR 289
Query: 310 VKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTS 369
A +LF + + ++W +I GY+Q+ E++ F EM SG PD SS+L S
Sbjct: 290 FDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPS 349
Query: 370 CGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSY 429
E LE +Q+H Y + +I D F+ ++L+D Y KC ++ A+ +F +VV +
Sbjct: 350 VSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVF 409
Query: 430 NAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIK 489
AMI GY ++L++F + + P +T VS+L + + +L+ +++HG IIK
Sbjct: 410 TAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIK 469
Query: 490 YGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKL 549
G G A+ID Y+KC A +F+ +++RDIV WN+M+ Q AI +
Sbjct: 470 KGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDI 529
Query: 550 YLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK 609
+ ++ +S + + +A ++A +NL S G+ H +IK L D + S LIDMYAK
Sbjct: 530 FRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAK 589
Query: 610 CGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIE-GLEPNYITFVG 668
CG+L+ A F + K++ WNS+I +HG+ +L LF EM+ + G+ P+ ITF+
Sbjct: 590 CGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLE 649
Query: 669 VLSACSHAGLIEDGLDHFQSMA-GFGIEPGMEHYASVVSLLGR----------------- 710
++S+C H G +++G+ F+SM +GI+P EHYA VV L GR
Sbjct: 650 IISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFP 709
Query: 711 ---NVW-----------NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVR 756
VW NVEL A+ + +DP +SG Y L+SN A W +VR
Sbjct: 710 PDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVR 769
Query: 757 KKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKGVGYVPN 814
M + K G SWIE+N H FV+ D +H + YS+L++L+ ++ GY+P
Sbjct: 770 SLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIPQ 827
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 230/689 (33%), Positives = 367/689 (53%), Gaps = 35/689 (5%)
Query: 161 ICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLM 220
+C+ QL G+++ +F+ +GF D +G+ L +Y G + +A VFD +
Sbjct: 97 LCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVK 156
Query: 221 VKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQ 280
++ A+ W ++ KSG S+ LF +M + V D Y S V + S L+ V GG+Q
Sbjct: 157 IEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQ 216
Query: 281 IHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSF 340
+H +L+ G G SV N L+ FY K RV AR++FDE+ +++ISW ++I GY+ N
Sbjct: 217 LHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGL 276
Query: 341 DREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNS 400
+ + +F +M SG + D SV C + GR VH+ KA ++ N+
Sbjct: 277 AEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNT 336
Query: 401 LVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPG 460
L+DMY+KC L A+ VF M+DR+VVSY +MI GY++E EA+ LF EM + P
Sbjct: 337 LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPD 396
Query: 461 LLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFD 520
+ T ++L + L+ K++H I + + D+F +AL+D Y+KC S ++A LVF
Sbjct: 397 VYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFS 456
Query: 521 EMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQR--PNEFTFAALITAASNLGSL 578
EM +DI+ WN ++ GY++ EA+ L+ LLL ++R P+E T A ++ A ++L +
Sbjct: 457 EMRVKDIISWNTIIGGYSKNCYANEALSLF-NLLLEEKRFSPDERTVACVLPACASLSAF 515
Query: 579 KHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTN 638
G++ H ++++ G D + ++L+DMYAKCG+L A+ F KD+ W MI
Sbjct: 516 DKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGY 575
Query: 639 AHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMA-GFGIEPG 697
HG +A+ LF +M G+E + I+FV +L ACSH+GL+++G F M IEP
Sbjct: 576 GMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPT 635
Query: 698 MEHYASVVSLLGR--------------------NVW-----------NVELGRYAAEMAI 726
+EHYA +V +L R +W +V+L AE
Sbjct: 636 VEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVF 695
Query: 727 SIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARD 786
++P ++G Y L++N +A W K++RK++ GL K G SWIE+ V+ FVA D
Sbjct: 696 ELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGD 755
Query: 787 KSHHAADLTYSILDNLILHIKGVGYVPNT 815
S+ + + L + + GY P T
Sbjct: 756 SSNPETENIEAFLRKVRARMIEEGYSPLT 784
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust.
Identities = 228/650 (35%), Positives = 353/650 (54%), Gaps = 37/650 (5%)
Query: 177 GEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVK 236
G +H +I++G + L+N YAK G + A +F+ ++ K VSW ++ITGY +
Sbjct: 33 GRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQ 92
Query: 237 SG---RSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMD 293
+G S + LF +MR D++ + Y L+ + A S LQ G+Q HA V++ D
Sbjct: 93 NGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGD 152
Query: 294 VSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTR 353
+ V L+ Y K G V+ ++F + +N +W+T++ GY EA+K+F R
Sbjct: 153 IYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLR 212
Query: 354 SGWK--PDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSL 411
+ D+ ++VL+S + + GRQ+H + K + + N+LV MY+KC+SL
Sbjct: 213 EKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESL 272
Query: 412 TEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLS 471
EA K+FD DRN ++++AM+ GYS+ + EA+ LF M + P T V +L
Sbjct: 273 NEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNAC 332
Query: 472 SSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWN 531
S + LE KQ+H ++K G +FA +AL+D Y+K DAR FD + +RD+ +W
Sbjct: 333 SDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWT 392
Query: 532 AMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL 591
+++ GY Q +NEEA+ LY + + PN+ T A+++ A S+L +L+ G+Q H H IK
Sbjct: 393 SLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKH 452
Query: 592 GLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLF 651
G + I SAL MY+KCGSLED F T KDV WN+MI +H+G+ +AL LF
Sbjct: 453 GFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELF 512
Query: 652 REMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGR 710
EM+ EG+EP+ +TFV ++SACSH G +E G +F M+ G++P ++HYA +V LL R
Sbjct: 513 EEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSR 572
Query: 711 N--------------------VWNV-----------ELGRYAAEMAISIDPMDSGSYTLL 739
+W + ELG YA E +++ +S +Y L
Sbjct: 573 AGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQL 632
Query: 740 SNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSH 789
S + D ++V K M +G+ KE G SWIE+ N+ H FV D H
Sbjct: 633 SGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMH 682
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 819 | ||||||
| 225438557 | 825 | PREDICTED: pentatricopeptide repeat-cont | 0.960 | 0.953 | 0.633 | 0.0 | |
| 147772562 | 732 | hypothetical protein VITISV_038220 [Viti | 0.835 | 0.934 | 0.662 | 0.0 | |
| 356528519 | 849 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.948 | 0.583 | 0.0 | |
| 357520433 | 998 | Pentatricopeptide repeat-containing prot | 0.956 | 0.784 | 0.564 | 0.0 | |
| 449461477 | 837 | PREDICTED: pentatricopeptide repeat-cont | 0.954 | 0.934 | 0.571 | 0.0 | |
| 297802056 | 1057 | hypothetical protein ARALYDRAFT_352947 [ | 0.894 | 0.693 | 0.561 | 0.0 | |
| 15235115 | 834 | pentatricopeptide repeat-containing prot | 0.896 | 0.880 | 0.555 | 0.0 | |
| 115475988 | 819 | Os08g0340900 [Oryza sativa Japonica Grou | 0.936 | 0.936 | 0.506 | 0.0 | |
| 357131819 | 822 | PREDICTED: pentatricopeptide repeat-cont | 0.903 | 0.900 | 0.504 | 0.0 | |
| 255583011 | 631 | pentatricopeptide repeat-containing prot | 0.770 | 1.0 | 0.596 | 0.0 |
| >gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39530-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1075 bits (2780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/827 (63%), Positives = 639/827 (77%), Gaps = 40/827 (4%)
Query: 23 SSNLLKSVTFSPRNPSLQSFNISTKRSVLAWFLQRPLPDNFNNKRITCYKQVHAQIAISG 82
++ + K+ NP LQ N+ KR A LQ + N I YK +H QI +SG
Sbjct: 2 ATGMQKTKDMEDENPCLQIPNLRPKRREFANLLQLSISRN----PIIHYKIIHGQIIVSG 57
Query: 83 LQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFI 142
LQ DTFLAN+L+ SK++ +D AR +FD M +NL++WSS+VSMY+++GY EEALMVF+
Sbjct: 58 LQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFV 117
Query: 143 GFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNL 202
+ P++++L+SVI ACTQLG G Q+H FV++SGFD+DVYVGTSL++
Sbjct: 118 DLQRKSGEHPNEFVLASVIRACTQLGVVEKGA----QLHGFVVRSGFDQDVYVGTSLIDF 173
Query: 203 YAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLL 262
Y+KNG++++A+ VFD L KTAV+WTTII GY K GRS +SL LF QMRET+VV D+Y++
Sbjct: 174 YSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVV 233
Query: 263 SSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV 322
SSVLSACSML+F+ GGKQIHA+VLRRG MDVSV+NVL+DFY+KC RVK R+LFD++ V
Sbjct: 234 SSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV 293
Query: 323 KNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQV 382
KNIISWTT+I GYMQNSFD EAMKLF EM R GWKPD FAC+SVLTSCGS EALEQGRQV
Sbjct: 294 KNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQV 353
Query: 383 HAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKL 442
HAY+ KAN+ESD FVKN L+DMYAK + L +A+KVFDVMA++NV+SYNAMIEGYS +EKL
Sbjct: 354 HAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKL 413
Query: 443 SEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSAL 502
SEAL+LFHEMRV PP LLTFVSLLG+S+S+F+LE SKQIHGLIIK+GV LD+FAGSAL
Sbjct: 414 SEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSAL 473
Query: 503 IDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE 562
ID YSKC KDAR VF+EMN++DIVVWNAM GYTQ LENEEA+KLY L S+Q+PNE
Sbjct: 474 IDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNE 533
Query: 563 FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGS 622
FTFAALITAASNL SL+HGQQFHN L+K+GLDF F+T+AL+DMYAKCGS+E+A + F S
Sbjct: 534 FTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNS 593
Query: 623 TTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDG 682
+ W+DV CWNSMI T+A HGE +AL +FREM+ EG++PNY+TFV VLSACSHAG +EDG
Sbjct: 594 SIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDG 653
Query: 683 LDHFQSMAGFGIEPGMEHYASVVSLLGRN--------------------VW--------- 713
L+HF SM GFGI+PG EHYA VVSLLGR+ VW
Sbjct: 654 LNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRI 713
Query: 714 --NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRS 771
NVELG+YAAEMAIS DP DSGSY LLSN FA MWAD K+VR +MD ++KE GRS
Sbjct: 714 AGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRS 773
Query: 772 WIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKGVGYVPNTSAL 818
WIEVNN+V+ F+ARD +H AD+ S+LD LI HIKG GYVP+ +AL
Sbjct: 774 WIEVNNKVNVFIARDTTHREADIG-SVLDILIQHIKGAGYVPDATAL 819
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/719 (66%), Positives = 571/719 (79%), Gaps = 35/719 (4%)
Query: 131 KGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFD 190
+GY EEALMVF+ + P++++L+SVI ACTQLG G Q+H FV++SGFD
Sbjct: 14 EGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGA----QLHGFVVRSGFD 69
Query: 191 RDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQM 250
+DVYVGTSL++ Y+KNG ++ A+ VFD L+ KTAV+WTTII GY K GRS +SL LF QM
Sbjct: 70 QDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQM 129
Query: 251 RETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRV 310
RET+VV D+Y++SSVLSACSML+F+ GGKQIHA+VLRRG MDVSV+NVL+DFY+KC RV
Sbjct: 130 RETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRV 189
Query: 311 KMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSC 370
K R+LFD++ VKNIISWTT+I GYMQNSFD EAMKLF EM R GWKPD FAC+SVLTSC
Sbjct: 190 KAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSC 249
Query: 371 GSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYN 430
GS+EALEQGRQVHAY+ KAN+ES+ FVKN L+DMYAK + L +A+KVFDVMA++NV+SYN
Sbjct: 250 GSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYN 309
Query: 431 AMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY 490
AMIEGYS +EKLSEAL+LFHEMRV PP LLTFVSLLG+S+S+F+LE SKQIHGLIIK
Sbjct: 310 AMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKX 369
Query: 491 GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLY 550
GV LD+FAGSALID YSKC KDAR VF+EMN++DIVVWNAM GYTQ LENEEA+KLY
Sbjct: 370 GVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLY 429
Query: 551 LELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC 610
L S+Q+PNEFTFAALITAASNL SL+HGQQFHN L+K+GLDF F+T+AL+DMYAKC
Sbjct: 430 STLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKC 489
Query: 611 GSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVL 670
GS+E+A + F S+ W+DV CWNSMI T+A HGE +AL +FREM+ EG++PNY+TFV VL
Sbjct: 490 GSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVL 549
Query: 671 SACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN------------------- 711
SACSHAG +EDGL+HF SM GFGI+PG EHYA VVSLLGR+
Sbjct: 550 SACSHAGXVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAA 609
Query: 712 -VW-----------NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759
VW NVELG+YAAEMAIS DP DSGSY LLSN FA MWAD K+VR +M
Sbjct: 610 IVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRM 669
Query: 760 DLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKGVGYVPNTSAL 818
D ++KE GRSWIEVNN+V+ F+AR +H AD+ S+LD LI HIKG GYVP+ +AL
Sbjct: 670 DSSEVVKEPGRSWIEVNNKVNVFIARXTTHREADMIGSVLDILIQHIKGAGYVPDATAL 728
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39530-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/858 (58%), Positives = 622/858 (72%), Gaps = 53/858 (6%)
Query: 1 MRVHQRLTHSLRKPHHKIKNC-NSSNLLKSVTFSPRNPSLQSFN--ISTKRSV---LAWF 54
MR RL L H K N N S L T P P LQ + I +R + L
Sbjct: 1 MRSQHRLL--LGISHFKFLNKDNVSQTLHFSTLLP--PFLQPHDSPILIQRKIGRELGKL 56
Query: 55 LQRPLPDNFNNKRITCYKQVHAQIAISGL-QCDTFLANMLLRNYSKANDLDGARKLFDTM 113
LQ P P+ + YK++HA I + G Q D FL N LL YSK N A+KLFDTM
Sbjct: 57 LQLPSPNILTSHY---YKKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTM 113
Query: 114 SERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDG 173
RNLV+WSS+VSMYT+ GY EAL++F F++ + +P++YIL+SV+ ACTQLG
Sbjct: 114 PHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLG----- 168
Query: 174 GNVGE--QMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTII 231
N+ + Q+H FV+K GF +DVYVGTSL++ YAK G VD+A+ +FDGL VKT V+WT II
Sbjct: 169 -NLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAII 227
Query: 232 TGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMG 291
GY K GRS++SL LFNQMRE DV D+Y++SSVLSACSML+F+ GGKQIH +VLRRG
Sbjct: 228 AGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFD 287
Query: 292 MDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEM 351
MDVSV+N ++DFY KC +VK R+LF+ + K+++SWTT+I G MQNSF +AM LF EM
Sbjct: 288 MDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEM 347
Query: 352 TRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSL 411
R GWKPD F C+SVL SCGS++AL++GRQVHAY+ K NI++D+FVKN L+DMYAKCDSL
Sbjct: 348 VRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSL 407
Query: 412 TEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLS 471
T ARKVFD++A NVVSYNAMIEGYS+++KL EALDLF EMR+ PP LLTFVSLLGLS
Sbjct: 408 TNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLS 467
Query: 472 SSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWN 531
SS+F LE S QIH LIIK+GV LD FAGSALID YSKC DARLVF+E+ RDIVVWN
Sbjct: 468 SSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWN 527
Query: 532 AMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL 591
AM GY+QQLENEE++KLY +L +S+ +PNEFTFAA+I AASN+ SL+HGQQFHN +IK+
Sbjct: 528 AMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKM 587
Query: 592 GLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLF 651
GLD D F+T++L+DMYAKCGS+E++++ F ST +D+ACWNSMI T A HG+ KAL +F
Sbjct: 588 GLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVF 647
Query: 652 REMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN 711
MI+EG++PNY+TFVG+LSACSHAGL++ G HF+SM+ FGIEPG++HYA +VSLLGR
Sbjct: 648 ERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESMSKFGIEPGIDHYACMVSLLGRA 707
Query: 712 --------------------VW-----------NVELGRYAAEMAISIDPMDSGSYTLLS 740
VW +VELG YAAEMAIS DP DSGSY LLS
Sbjct: 708 GKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGTYAAEMAISCDPADSGSYILLS 767
Query: 741 NTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILD 800
N FA MWA + VR+KMD+ ++KE G SWIEVNNEVH F+ARD +H + L +LD
Sbjct: 768 NIFASKGMWASVRMVREKMDMSRVVKEPGWSWIEVNNEVHRFIARDTAHRDSTLISLVLD 827
Query: 801 NLILHIKGVGYVPNTSAL 818
NLIL IKG GYVPN +
Sbjct: 828 NLILQIKGFGYVPNAATF 845
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/843 (56%), Positives = 607/843 (72%), Gaps = 60/843 (7%)
Query: 16 HKIKNCNSSNLLKSVTFS--------PRNPSLQSFNISTKRSV---LAWFLQRPLPDNFN 64
+K+K N N+++++ FS PR P I +R + LA LQ P
Sbjct: 4 YKLKFLNKINVIQTLHFSTLLHQFLEPRIPP-----IIEQRKIGRELANLLQSP------ 52
Query: 65 NKRITCYKQVHAQIAISGL-QCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSS 123
I C K++H++I + G + D FL N LL YSK N ++ A KLFDTMS +NLV+WSS
Sbjct: 53 --HIPCCKKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSS 110
Query: 124 LVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSF 183
+VSMYT + EALM+F+ F++ N +P++YIL+SV+ ACTQ GG N Q+H
Sbjct: 111 MVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGL----NPALQIHGL 166
Query: 184 VIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLS 243
V+K G+ +DVYV TSL++ Y K+ +DDA+ +FDGL VKT+ +WTTII GY K GRS +S
Sbjct: 167 VVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVS 226
Query: 244 LNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDF 303
L LF+QM+E V DKY+LSSVLSAC ML+F+ GGKQIH +VLR G+ MDVS++N +DF
Sbjct: 227 LKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDF 286
Query: 304 YSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFAC 363
Y KC +V++ R+LFD + KN++SWTT+I G MQNSF R+A+ LF EM R GW PD F C
Sbjct: 287 YFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGC 346
Query: 364 SSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD 423
+SVL SCGS+ ALE+GRQVHAY+ K NI++D+FVKN L+DMYAKCDSLT+ARKVF++MA
Sbjct: 347 TSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAA 406
Query: 424 RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQI 483
++VSYNAMIEGYS+++KL EALDLF EMR+ P LL FVSLLG+S+S++ LE S QI
Sbjct: 407 IDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQI 466
Query: 484 HGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLEN 543
HGLIIKYGV LD FAGSALID YSKC DARLVF+E+ +DIVVW AM GYTQQ EN
Sbjct: 467 HGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSEN 526
Query: 544 EEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSAL 603
EE++KLY L +S+ +PNEFTFAA+ITAASN+ SL+HGQQFHN +IK+G D D F+ + L
Sbjct: 527 EESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTL 586
Query: 604 IDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY 663
+DMYAK GS+E+A++ F ST WKD ACWNSMI T A HGE KAL +F +MI+EGL+PNY
Sbjct: 587 VDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNY 646
Query: 664 ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN------------ 711
+TFVGVLSACSH GL++ G DHF SM+ FGIEPG+EHY +VSLLGR
Sbjct: 647 VTFVGVLSACSHTGLLDLGFDHFDSMSQFGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEK 706
Query: 712 --------VW-----------NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADA 752
VW NVELG YAAEMAIS +P DSGSY LLSN FA MW +
Sbjct: 707 MPIKQAAVVWRSLLSACRVSGNVELGTYAAEMAISCNPADSGSYVLLSNIFASKGMWVNV 766
Query: 753 KQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKGVGYV 812
+++R+KMD+ G++KE G SWIEVNNE+H F+A+D +H + +LDNL+L IKG GY+
Sbjct: 767 RRLREKMDISGVVKEPGCSWIEVNNEIHKFIAKDTAHRDSAPISLVLDNLLLQIKGFGYM 826
Query: 813 PNT 815
NT
Sbjct: 827 ANT 829
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39530-like [Cucumis sativus] gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39530-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/821 (57%), Positives = 592/821 (72%), Gaps = 39/821 (4%)
Query: 29 SVTFSPRNPSLQSFNISTKRSVLAWFLQRPLPDNFNNKRITCYKQVHAQIAISGLQCDTF 88
S P PS S N+ K LA L P+ +NK I Y++VH Q+ + GLQ D F
Sbjct: 21 SPNVQPMLPSFSSQNVKVKGRALANLLLAPV----SNKSILYYRKVHCQVVLWGLQYDVF 76
Query: 89 LANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVG 148
L+N+LL +Y K + A LFD M RNLVSWSS+VSMYT+ GY E+AL+ F+ F +
Sbjct: 77 LSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTC 136
Query: 149 NGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGS 208
+ ++YIL+S+I AC Q DGG G Q+HS+VIKSGF DVYVGTSL+ LYAK+G
Sbjct: 137 VDKLNEYILASIIRACVQ----RDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGE 192
Query: 209 VDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSA 268
+D A+ VFDGL++KT V+WT IITGY KSGRS++SL LFN M E++V+ DKY+LSS+L+A
Sbjct: 193 IDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNA 252
Query: 269 CSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISW 328
CS+L ++ GGKQIHA+VLR MDVS NVL+DFY+KCGRVK + LFD ++VKNIISW
Sbjct: 253 CSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISW 312
Query: 329 TTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFK 388
TT+I GYMQNS+D EA++L EM R GWKPD++ACSSVLTSCGSV+AL+ GRQ+H+Y K
Sbjct: 313 TTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIK 372
Query: 389 ANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDL 448
+E DNFV N+L+DMY+KC++L +A++VFDV+ +VV YNAMIEGYS++ L AL++
Sbjct: 373 VCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEV 432
Query: 449 FHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSK 508
F EMR+ V P LTFVSLLGLS+++ L+ SKQIHGLIIKYG LD F SALID YSK
Sbjct: 433 FQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSK 492
Query: 509 CFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAAL 568
C +DAR VF+ +DIVVWN++ GY QL++EEA KLY +L LS++RPNEFTFAAL
Sbjct: 493 CSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAAL 552
Query: 569 ITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDV 628
TAAS L SL HGQQFHN ++K+GL+ D FIT+AL+DMYAKCGS+E+A + F S+ WKD
Sbjct: 553 TTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDT 612
Query: 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQS 688
ACWNSMI A HG+ +AL +F M+ + PNY+TFV VLSACSH G +EDGL H+ S
Sbjct: 613 ACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNS 672
Query: 689 MAGFGIEPGMEHYASVVSLLGRN--------------------VW-----------NVEL 717
MA +GIEPG+EHYASVV+LLGR VW NVEL
Sbjct: 673 MARYGIEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAALVWRSLLSACRVFGNVEL 732
Query: 718 GRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNN 777
++AAEMAISIDPMDSGSY +LSN FA MW D K++R KMD++G++KE G+SWIEVN
Sbjct: 733 AKHAAEMAISIDPMDSGSYVMLSNIFASKGMWGDVKRLRLKMDVNGVVKEPGQSWIEVNG 792
Query: 778 EVHAFVARDKSHHAADLTYSILDNLILHIKGVGYVPNTSAL 818
EVH FV+RDK H DL Y LD L +K VG V +T+ L
Sbjct: 793 EVHIFVSRDKVHDETDLIYLALDELTTQMKDVGCVHDTTIL 833
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp. lyrata] gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/769 (56%), Positives = 560/769 (72%), Gaps = 36/769 (4%)
Query: 74 VHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGY 133
VH QI +SGL+ DT+L+N+L+ YS+A + ARK+F+ M ERNLV+WS++VS G+
Sbjct: 66 VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGF 125
Query: 134 GEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDV 193
EE+L+VF+ F + P++YILSS I AC+ L G G + Q+ SF++KS FDRDV
Sbjct: 126 YEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRW--MVFQLQSFLVKSRFDRDV 183
Query: 194 YVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRET 253
YVGT L++ Y K G++D A+ VFD L K+ V+WTT+I+G VK GRS +SL LF Q+ E
Sbjct: 184 YVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEG 243
Query: 254 DVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMA 313
+VV D Y+LS+VLSACS+L F+ GGKQIHAH+LR G D S++NVL+D Y KCGRV+ A
Sbjct: 244 NVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAA 303
Query: 314 RRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSV 373
+LFD + KNIISWTTL+ GY QNS +EAM+LFT M + G KPD FACSS+LTSC S+
Sbjct: 304 HKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASL 363
Query: 374 EALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMI 433
ALE G QVHAY+ KAN+ +D++V NSL+DMYAKCD LTEARKVFD+ A +VV +NAMI
Sbjct: 364 HALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMI 423
Query: 434 EGYSK---EEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY 490
EGYS+ + +L +AL++FH+MR + P LLTFVSLL S+S+ SL SKQIHGL+ K+
Sbjct: 424 EGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKF 483
Query: 491 GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLY 550
G+ LD+FAGSALI YS C+ KD+RLVFDEM +D+V+WN+M GY QQ ENEEA+ L+
Sbjct: 484 GLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLF 543
Query: 551 LELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC 610
LEL LS+ RP+EFTF ++TAA NL SL+ GQ+FH L+K GL+ + +IT+AL+DMYAKC
Sbjct: 544 LELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKC 603
Query: 611 GSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVL 670
GS EDA++ F S +DV CWNS+I + A+HGE KAL + +M+ EG+EPNYITFVGVL
Sbjct: 604 GSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVL 663
Query: 671 SACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN------------------- 711
SACSHAGL+EDGL F+ M FGIEP EHY +VSLLGR
Sbjct: 664 SACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAA 723
Query: 712 -VW-----------NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759
VW NVEL YAAEMAI DP DSGS+TLLSN +A MW DAK+VR++M
Sbjct: 724 IVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRERM 783
Query: 760 DLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKG 808
+G++KE GRSWIE+N EVH F+++DKSH A+ Y +LD+L++ I+G
Sbjct: 784 KFEGVVKEPGRSWIEINKEVHIFLSKDKSHCKANQIYEVLDDLLVQIRG 832
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana] gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana] gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/770 (55%), Positives = 564/770 (73%), Gaps = 36/770 (4%)
Query: 74 VHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGY 133
VH QI + GL+ DT+L+N+L+ YS+A + ARK+F+ M ERNLVSWS++VS G
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125
Query: 134 GEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDV 193
EE+L+VF+ F + P++YILSS I AC+ L G G + Q+ SF++KSGFDRDV
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRW--MVFQLQSFLVKSGFDRDV 183
Query: 194 YVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRET 253
YVGT L++ Y K+G++D A+ VFD L K+ V+WTT+I+G VK GRS +SL LF Q+ E
Sbjct: 184 YVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMED 243
Query: 254 DVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMA 313
+VV D Y+LS+VLSACS+L F+ GGKQIHAH+LR G+ MD S++NVL+D Y KCGRV A
Sbjct: 244 NVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAA 303
Query: 314 RRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSV 373
+LF+ + KNIISWTTL+ GY QN+ +EAM+LFT M++ G KPD +ACSS+LTSC S+
Sbjct: 304 HKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASL 363
Query: 374 EALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMI 433
AL G QVHAY+ KAN+ +D++V NSL+DMYAKCD LT+ARKVFD+ A +VV +NAMI
Sbjct: 364 HALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMI 423
Query: 434 EGYSK---EEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY 490
EGYS+ + +L EAL++F +MR + P LLTFVSLL S+S+ SL SKQIHGL+ KY
Sbjct: 424 EGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKY 483
Query: 491 GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLY 550
G+ LD+FAGSALID YS C+ KD+RLVFDEM +D+V+WN+M GY QQ ENEEA+ L+
Sbjct: 484 GLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLF 543
Query: 551 LELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC 610
LEL LS++RP+EFTFA ++TAA NL S++ GQ+FH L+K GL+ + +IT+AL+DMYAKC
Sbjct: 544 LELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKC 603
Query: 611 GSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVL 670
GS EDA++ F S +DV CWNS+I + A+HGE KAL + +M+ EG+EPNYITFVGVL
Sbjct: 604 GSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVL 663
Query: 671 SACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN------------------- 711
SACSHAGL+EDGL F+ M FGIEP EHY +VSLLGR
Sbjct: 664 SACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAA 723
Query: 712 -VW-----------NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759
VW NVEL +AAEMAI DP DSGS+T+LSN +A MW +AK+VR++M
Sbjct: 724 IVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERM 783
Query: 760 DLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKGV 809
++G++KE GRSWI +N EVH F+++DKSH A+ Y +LD+L++ I+GV
Sbjct: 784 KVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLLVQIRGV 833
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group] gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group] gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group] gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group] gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/804 (50%), Positives = 543/804 (67%), Gaps = 37/804 (4%)
Query: 45 STKRSVLAWFLQRPLPDNFNNKRITCYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLD 104
ST LA L LP + R +HA+ ++G D FL N+LLR YS L
Sbjct: 12 STHIRSLARVLLSCLPTGGDRLR-RLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLR 70
Query: 105 GARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICAC 164
AR LFD M RNLVSW S++SMYT+ G + A+ +F+ F K P++++L+SV+ AC
Sbjct: 71 DARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRAC 130
Query: 165 TQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTA 224
TQ ++GEQ+H +K D +VYVGT+L+NLYAK G +D+A VF L V+T
Sbjct: 131 TQ----SKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTP 186
Query: 225 VSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAH 284
V+W T+ITGY + G ++L LF++M V D+++L+S +SACS L F+ GG+QIH +
Sbjct: 187 VTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGY 246
Query: 285 VLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREA 344
R D SVINVL+D Y KC R+ AR+LFD +E +N++SWTT+I GYMQNSF+ EA
Sbjct: 247 AYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEA 306
Query: 345 MKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDM 404
+ +F MT++GW+PD FAC+S+L SCGS+ A+ QGRQ+HA+ KA++E+D +VKN+L+DM
Sbjct: 307 ITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDM 366
Query: 405 YAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTF 464
YAKC+ LTEAR VFD +A+ + +SYNAMIEGYSK L+EA+++F MR + P LLTF
Sbjct: 367 YAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTF 426
Query: 465 VSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ 524
VSLLG+SSS ++E SKQIHGLIIK G LD++A SALID YSKC DA+ VF+ ++
Sbjct: 427 VSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHY 486
Query: 525 RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQF 584
+D+V+WN+M+ G+ Q + EEAIKL+ +LLLS PNEFTF AL+T AS L S+ HGQQF
Sbjct: 487 KDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQF 546
Query: 585 HNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEP 644
H +IK G+D D +++ALIDMYAKCG +++ F ST +DV CWNSMI T A HG
Sbjct: 547 HAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITTYAQHGHA 606
Query: 645 MKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSM-AGFGIEPGMEHYAS 703
+AL +FR M +EPNY+TFVGVLSAC+HAG + +GL+HF SM + + IEPG+EHYAS
Sbjct: 607 EEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYAS 666
Query: 704 VVSLLGRN--------------------VW-----------NVELGRYAAEMAISIDPMD 732
VV+L GR+ VW N E+GRYAAEMA+ DP D
Sbjct: 667 VVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAEIGRYAAEMALLADPTD 726
Query: 733 SGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAA 792
SG Y LLSN +A +WAD +R++MD G +KE G SWIEV EVH F+ R + H A
Sbjct: 727 SGPYVLLSNIYASKGLWADVHNLRQQMDSSGTVKETGCSWIEVTKEVHTFIVRGREHPEA 786
Query: 793 DLTYSILDNLILHIKGVGYVPNTS 816
+L YS+LD L IK +GYVP+TS
Sbjct: 787 ELIYSVLDELTSLIKNLGYVPDTS 810
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39530-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/777 (50%), Positives = 532/777 (68%), Gaps = 37/777 (4%)
Query: 75 HAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYG 134
HA+ ++G D FLAN+LLR YSK + AR+LFD M +NLVSW S +SM+ + G
Sbjct: 34 HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93
Query: 135 EEALMVFIGFLKVGNGR-PDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDV 193
E+A+ +F F + G P++++L+S + AC Q + G+Q+H ++ G D +V
Sbjct: 94 EDAVALFAAFQRASGGEAPNEFLLASALRACAQ----SRAVSFGQQVHGVAVRIGLDGNV 149
Query: 194 YVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRET 253
YVGT+L+NLYAK G +D A VFD L VK V+WT +ITGY + G+ ++L LF +M
Sbjct: 150 YVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLD 209
Query: 254 DVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMA 313
V D+++L+S +SACS L F+ GG+Q H + R + D SVIN L+D Y KC R+ +A
Sbjct: 210 GVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLA 269
Query: 314 RRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSV 373
R+LFD +E +N++SWTT+I GYMQNS D EAM +F ++++ GW+PD FAC+S+L SCGS+
Sbjct: 270 RKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSL 329
Query: 374 EALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMI 433
A+ QGRQVHA++ KAN+ESD +VKNSL+DMYAKC+ LTEAR VF+ +A+ + +SYNAMI
Sbjct: 330 AAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMI 389
Query: 434 EGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVF 493
EGYS+ L+ A+D+F +MR + P LTFVSLLG+SSS ++E SKQIHGLI+K G
Sbjct: 390 EGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTS 449
Query: 494 LDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLEL 553
LD++AGS+LID YSK +DA+ VF+ M+ RD+V+WNAM+ G Q + EEA+KL+ +L
Sbjct: 450 LDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQL 509
Query: 554 LLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSL 613
+S PNEFTF AL+T AS L S+ HGQQFH +IK G D D +++ALIDMYAKCG +
Sbjct: 510 QVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFI 569
Query: 614 EDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSAC 673
++ F ST KDV CWNSMI T A HG+ +AL +FR M G+EPNY+TFVGVLSAC
Sbjct: 570 KEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSAC 629
Query: 674 SHAGLIEDGLDHFQSM-AGFGIEPGMEHYASVVSLLGRN--------------------V 712
+HAGL+++GL HF M + IEPG EHYASVV+L GR+ V
Sbjct: 630 AHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAV 689
Query: 713 W-----------NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761
W NVE+GRYA EMA+ DP DSG L+SN +A +W+DA+++R+ MD
Sbjct: 690 WRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASRGLWSDAQKLRQGMDC 749
Query: 762 DGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKGVGYVPNTSAL 818
G++KE G SWIEV EVH F+AR + H AD+ YS+LD L +K GY+P+TS L
Sbjct: 750 AGVVKEPGYSWIEVMKEVHTFIARGREHPEADVIYSLLDELTSILKNGGYLPDTSEL 806
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255583011|ref|XP_002532274.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223528034|gb|EEF30114.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/661 (59%), Positives = 495/661 (74%), Gaps = 30/661 (4%)
Query: 113 MSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGD 172
M ERNL+SWSS+VSMY+K+G+ EEAL+VF+ F + N P++YIL+SVI AC Q+GG
Sbjct: 1 MPERNLISWSSVVSMYSKRGFSEEALLVFLDFKRCCNENPNEYILASVISACVQVGG--- 57
Query: 173 GGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIIT 232
++ +QMH F +KSGFDR+VYVGTSL++LYAK G++D+A+ VFDGL+ K+AV+WTTIIT
Sbjct: 58 --SIDKQMHGFAVKSGFDRNVYVGTSLVDLYAKGGNIDEARLVFDGLLEKSAVTWTTIIT 115
Query: 233 GYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGM 292
VK GRS++SL LF+QMRET+VV D Y+LSSVL ACS L+FV GGKQIH HVLRRG+ +
Sbjct: 116 ACVKRGRSEVSLQLFSQMRETNVVPDGYILSSVLGACSQLEFVQGGKQIHGHVLRRGIEI 175
Query: 293 DVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMT 352
DVS +NVL+DFY+K G+V+ AR+LFD + +N+ISWT +I GYMQNSFDREA+KLF EMT
Sbjct: 176 DVSFVNVLIDFYTKSGKVQSARKLFDGMADRNVISWTAMIAGYMQNSFDREAVKLFIEMT 235
Query: 353 RSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLT 412
R G +PD F C+S+LTSCGS+EALE GRQVHAYS K N+ESD F++N L+DMYAKC SL
Sbjct: 236 RLGRRPDGFVCTSILTSCGSLEALELGRQVHAYSIKGNVESDIFLQNGLIDMYAKCGSLN 295
Query: 413 EARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSS 472
+ARKVFD M RNVVSYNA+IEGYS E+LSEA++LF EMR G + P LTFVSLLG S+
Sbjct: 296 DARKVFDDMTIRNVVSYNALIEGYSTLEQLSEAMNLFREMRHGMLSPSFLTFVSLLGASA 355
Query: 473 SVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNA 532
++ +LE KQIH LI K+G+ +++FAGSALID YSKC DARLVFD+M ++DIVVWNA
Sbjct: 356 TLSALELGKQIHALITKFGISMEIFAGSALIDFYSKCSCLMDARLVFDKMTEKDIVVWNA 415
Query: 533 MLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLG 592
ML GYTQQLENEEA+KLY EL +S+ +PN TFAAL TAASNL SL+HGQQFHNH+IK G
Sbjct: 416 MLFGYTQQLENEEALKLYTELQISEPKPNVVTFAALTTAASNLASLQHGQQFHNHIIKTG 475
Query: 593 LDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFR 652
LD F T++LIDMYAKCGSLEDA + FG KD H+ E M
Sbjct: 476 LDSHPFTTNSLIDMYAKCGSLEDARKAFGHV--KD----------GLHYFESMPKF---- 519
Query: 653 EMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNV 712
++P + V+S +G + + + + M EP + S++S R
Sbjct: 520 -----SIKPGTEHYACVVSLLGRSGKLYEAKEFIEKMP---TEPEAVVWRSLLSAC-RVS 570
Query: 713 WNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSW 772
NVELG+YAAE AISID DSGSYTLLSN +A MW D K+VR++MD+ G++KEAG SW
Sbjct: 571 GNVELGKYAAEKAISIDSTDSGSYTLLSNIYASKGMWVDVKKVRERMDIAGVVKEAGHSW 630
Query: 773 I 773
I
Sbjct: 631 I 631
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 819 | ||||||
| TAIR|locus:2122551 | 834 | AT4G39530 [Arabidopsis thalian | 0.775 | 0.761 | 0.559 | 7.4e-222 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.737 | 0.678 | 0.329 | 3.9e-110 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.584 | 0.483 | 0.342 | 2e-96 | |
| TAIR|locus:2176927 | 893 | AT5G52850 [Arabidopsis thalian | 0.780 | 0.715 | 0.309 | 6.9e-96 | |
| TAIR|locus:2007116 | 787 | AT1G69350 "AT1G69350" [Arabido | 0.802 | 0.834 | 0.315 | 2e-95 | |
| TAIR|locus:2039817 | 836 | AT2G39620 "AT2G39620" [Arabido | 0.849 | 0.832 | 0.312 | 5.5e-92 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.792 | 0.735 | 0.313 | 1e-91 | |
| TAIR|locus:2098901 | 783 | AT3G61170 [Arabidopsis thalian | 0.754 | 0.789 | 0.308 | 3e-91 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.728 | 0.687 | 0.347 | 4.5e-91 | |
| TAIR|locus:2064828 | 860 | AT2G40720 [Arabidopsis thalian | 0.797 | 0.759 | 0.324 | 1.9e-90 |
| TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1843 (653.8 bits), Expect = 7.4e-222, Sum P(2) = 7.4e-222
Identities = 358/640 (55%), Positives = 469/640 (73%)
Query: 74 VHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGY 133
VH QI + GL+ DT+L+N+L+ YS+A + ARK+F+ M ERNLVSWS++VS G
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125
Query: 134 GEEALMVFIGFLKVGNGRPDDYILSSVICACTQLXXXXXXXXXXEQMHSFVIKSGFDRDV 193
EE+L+VF+ F + P++YILSS I AC+ L Q+ SF++KSGFDRDV
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVF--QLQSFLVKSGFDRDV 183
Query: 194 YVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRET 253
YVGT L++ Y K+G++D A+ VFD L K+ V+WTT+I+G VK GRS +SL LF Q+ E
Sbjct: 184 YVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMED 243
Query: 254 DVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMA 313
+VV D Y+LS+VLSACS+L F+ GGKQIHAH+LR G+ MD S++NVL+D Y KCGRV A
Sbjct: 244 NVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAA 303
Query: 314 RRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSV 373
+LF+ + KNIISWTTL+ GY QN+ +EAM+LFT M++ G KPD +ACSS+LTSC S+
Sbjct: 304 HKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASL 363
Query: 374 EALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMI 433
AL G QVHAY+ KAN+ +D++V NSL+DMYAKCD LT+ARKVFD+ A +VV +NAMI
Sbjct: 364 HALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMI 423
Query: 434 EGYSK---EEKLSEALDLFHEMRVGFVPPXXXXXXXXXXXXXXXXXXXXXKQIHGLIIKY 490
EGYS+ + +L EAL++F +MR + P KQIHGL+ KY
Sbjct: 424 EGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKY 483
Query: 491 GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLY 550
G+ LD+FAGSALID YS C+ KD+RLVFDEM +D+V+WN+M GY QQ ENEEA+ L+
Sbjct: 484 GLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLF 543
Query: 551 LELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC 610
LEL LS++RP+EFTFA ++TAA NL S++ GQ+FH L+K GL+ + +IT+AL+DMYAKC
Sbjct: 544 LELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKC 603
Query: 611 GSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVL 670
GS EDA++ F S +DV CWNS+I + A+HGE KAL + +M+ EG+EPNYITFVGVL
Sbjct: 604 GSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVL 663
Query: 671 SACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGR 710
SACSHAGL+EDGL F+ M FGIEP EHY +VSLLGR
Sbjct: 664 SACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGR 703
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
Identities = 207/629 (32%), Positives = 335/629 (53%)
Query: 100 ANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSS 159
A+ + GA +F + S R+ W L+ + EA++ ++ + +G +PD+Y +
Sbjct: 45 ASAVSGAPSIFISQS-RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGI-KPDNYAFPA 102
Query: 160 VICACTQLXXXXXXXXXXEQMHSFVIKSGFDRD-VYVGTSLMNLYAKNGSVDDAKFVFDG 218
++ A L +Q+H+ V K G+ D V V +L+NLY K G VFD
Sbjct: 103 LLKAVADLQDMELG----KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR 158
Query: 219 LMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGG- 277
+ + VSW ++I+ + +++L F M + +V + L SV++ACS L G
Sbjct: 159 ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGL 218
Query: 278 --GKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGY 335
GKQ+HA+ LR+G ++ +IN L+ Y K G++ ++ L +++++W T++
Sbjct: 219 MMGKQVHAYGLRKGE-LNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 277
Query: 336 MQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFK-ANIESD 394
QN EA++ EM G +PD+F SSVL +C +E L G+++HAY+ K +++ +
Sbjct: 278 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 337
Query: 395 NFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRV 454
+FV ++LVDMY C + R+VFD M DR + +NAMI GYS+ E EAL LF M
Sbjct: 338 SFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEE 397
Query: 455 GFVPPXXXXXXXXXXXXXXXXXXXXXKQ-IHGLIIKYGVFLDVFAGSALIDAYSKCFSNK 513
K+ IHG ++K G+ D F + L+D YS+
Sbjct: 398 SAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKID 457
Query: 514 DARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLY-----LELLLSQQ------RPNE 562
A +F +M RD+V WN M+ GY +E+A+ L LE +S+ +PN
Sbjct: 458 IAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNS 517
Query: 563 FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGS 622
T ++ + + L +L G++ H + IK L D + SAL+DMYAKCG L+ + + F
Sbjct: 518 ITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 577
Query: 623 TTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDG 682
K+V WN +I HG +A+ L R M+++G++PN +TF+ V +ACSH+G++++G
Sbjct: 578 IPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEG 637
Query: 683 LDHFQSMA-GFGIEPGMEHYASVVSLLGR 710
L F M +G+EP +HYA VV LLGR
Sbjct: 638 LRIFYVMKPDYGVEPSSDHYACVVDLLGR 666
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
Identities = 165/482 (34%), Positives = 267/482 (55%)
Query: 231 ITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGM 290
++ Y+ SG+ L F M E+DV D+ +L+ + + G+Q+H L+ G+
Sbjct: 287 LSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGL 346
Query: 291 GMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTE 350
+ ++V N L++ Y K + AR +FD + +++ISW ++I G QN + EA+ LF +
Sbjct: 347 DLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQ 406
Query: 351 MTRSGWKPDDFACSSVLTSCGSV-EALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCD 409
+ R G KPD + +SVL + S+ E L +QVH ++ K N SD+FV +L+D Y++
Sbjct: 407 LLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNR 466
Query: 410 SLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPXXXXXXXXXX 469
+ EA +F+ + ++V++NAM+ GY++ + L LF M
Sbjct: 467 CMKEAEILFE-RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFK 525
Query: 470 XXXXXXXXXXXKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVV 529
KQ+H IK G LD++ S ++D Y KC A+ FD + D V
Sbjct: 526 TCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVA 585
Query: 530 WNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLI 589
W M+ G + E E A ++ ++ L P+EFT A L A+S L +L+ G+Q H + +
Sbjct: 586 WTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANAL 645
Query: 590 KLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALL 649
KL D F+ ++L+DMYAKCGS++DAY F ++ WN+M+ A HGE + L
Sbjct: 646 KLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQ 705
Query: 650 LFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLL 708
LF++M G++P+ +TF+GVLSACSH+GL+ + H +SM G +GI+P +EHY+ + L
Sbjct: 706 LFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADAL 765
Query: 709 GR 710
GR
Sbjct: 766 GR 767
|
|
| TAIR|locus:2176927 AT5G52850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
Identities = 201/649 (30%), Positives = 349/649 (53%)
Query: 64 NNKRITCYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSS 123
N+ RI + +H + GL + L N LL Y K + + ARKLFD MS R + +W+
Sbjct: 37 NSSRIGLH--IHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRTVFAWTV 94
Query: 124 LVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLXXXXXXXXXXEQMHSF 183
++S +TK AL +F + G P+++ SSV+ +C L ++H
Sbjct: 95 MISAFTKSQEFASALSLFEEMMASGT-HPNEFTFSSVVRSCAGLRDISYGG----RVHGS 149
Query: 184 VIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLS 243
VIK+GF+ + VG+SL +LY+K G +A +F L +SWT +I+ V + + +
Sbjct: 150 VIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGARKWREA 209
Query: 244 LNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDF 303
L +++M + V +++ +L A S L + GK IH++++ RG+ ++V + L+DF
Sbjct: 210 LQFYSEMVKAGVPPNEFTFVKLLGASSFLG-LEFGKTIHSNIIVRGIPLNVVLKTSLVDF 268
Query: 304 YSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFAC 363
YS+ +++ A R+ + +++ WT+++ G+++N +EA+ F EM G +P++F
Sbjct: 269 YSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTY 328
Query: 364 SSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCD-SLTEARKVFDVMA 422
S++L+ C +V +L+ G+Q+H+ + K E V N+LVDMY KC S EA +VF M
Sbjct: 329 SAILSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMV 388
Query: 423 DRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPXXXXXXXXXXXXXXXXXXXXXKQ 482
NVVS+ +I G + + L EM V P +
Sbjct: 389 SPNVVSWTTLILGLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLE 448
Query: 483 IHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLE 542
IH +++ V ++ G++L+DAY+ A V M +RD + + +++ + + +
Sbjct: 449 IHAYLLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGK 508
Query: 543 NEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSA 602
+E A+ + + R ++ + I+A++NLG+L+ G+ H + +K G + + ++
Sbjct: 509 HEMALSVINYMYGDGIRMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVLNS 568
Query: 603 LIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662
L+DMY+KCGSLEDA + F DV WN ++ A +G AL F EM ++ EP+
Sbjct: 569 LVDMYSKCGSLEDAKKVFEEIATPDVVSWNGLVSGLASNGFISSALSAFEEMRMKETEPD 628
Query: 663 YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGR 710
+TF+ +LSACS+ L + GL++FQ M + IEP +EHY +V +LGR
Sbjct: 629 SVTFLILLSACSNGRLTDLGLEYFQVMKKIYNIEPQVEHYVHLVGILGR 677
|
|
| TAIR|locus:2007116 AT1G69350 "AT1G69350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
Identities = 210/665 (31%), Positives = 353/665 (53%)
Query: 73 QVHAQIAISG-LQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKK 131
Q+HA + ++G L+ D L+ +Y+ D +R +F+ + + L+
Sbjct: 19 QLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWC 78
Query: 132 GYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLXXXXXXXXXXEQMHSFVIKSGFDR 191
+ A+ ++ + + ++ SV+ AC ++H +IK G D
Sbjct: 79 HLLDAAIDLYHRLVSETT-QISKFVFPSVLRACA---GSREHLSVGGKVHGRIIKGGVDD 134
Query: 192 DVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMR 251
D + TSL+ +Y + G++ DA+ VFDG+ V+ V+W+T+++ +++G +L +F M
Sbjct: 135 DAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMV 194
Query: 252 ETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVK 311
+ V D + SV+ C+ L + + +H + R+ +D ++ N L+ YSKCG +
Sbjct: 195 DDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLL 254
Query: 312 MARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCG 371
+ R+F++I KN +SWT +I Y + F +A++ F+EM +SG +P+ SVL+SCG
Sbjct: 255 SSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCG 314
Query: 372 SVEALEQGRQVHAYSFKANIESD-NFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYN 430
+ + +G+ VH ++ + ++ + + +LV++YA+C L++ V V++DRN+V++N
Sbjct: 315 LIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWN 374
Query: 431 AMIEGYSKEEKLSEALDLFHEMRVGFVPPXXXXXXXXXXXXXXXXXXXXXKQIHGLIIKY 490
++I Y+ + +AL LF +M + P KQIHG +I+
Sbjct: 375 SLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRT 434
Query: 491 GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLY 550
V D F ++LID YSK S A VF+++ R +V WN+ML G++Q + EAI L+
Sbjct: 435 DVS-DEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLF 493
Query: 551 LELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC 610
+ S NE TF A+I A S++GSL+ G+ H+ LI GL D F +ALIDMYAKC
Sbjct: 494 DYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLK-DLFTDTALIDMYAKC 552
Query: 611 GSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVL 670
G L A F + + + + W+SMI HG A+ F +M+ G +PN + F+ VL
Sbjct: 553 GDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVL 612
Query: 671 SACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDP 730
SAC H+G +E+G +F M FG+ P EH+A + LL R+ E R EM D
Sbjct: 613 SACGHSGSVEEGKYYFNLMKSFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADA 672
Query: 731 MDSGS 735
GS
Sbjct: 673 SVWGS 677
|
|
| TAIR|locus:2039817 AT2G39620 "AT2G39620" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 5.5e-92, Sum P(2) = 5.5e-92
Identities = 222/710 (31%), Positives = 371/710 (52%)
Query: 73 QVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKG 132
++H IA GL+ D ++ L+ Y KA DL AR++FD M +++V+W+++VS + G
Sbjct: 121 RIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNG 180
Query: 133 YGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLXXXXXXXXXXEQMHSFVIKSGFDRD 192
AL++F ++ D L ++I A ++L +H VIK GF
Sbjct: 181 CSSAALLLFHD-MRSCCVDIDHVSLYNLIPAVSKLEKSDVCRC----LHGLVIKKGF--- 232
Query: 193 VYVGTS-LMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMR 251
++ +S L+++Y + A+ VF+ + K SW T++ Y +G + L LF+ MR
Sbjct: 233 IFAFSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMR 292
Query: 252 ETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVK 311
DV +K +S L A + + + G IH + +++G+ DVSV LM YSKCG ++
Sbjct: 293 NYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELE 352
Query: 312 MARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCG 371
+A +LF IE ++++SW+ +I Y Q EA+ LF +M R KP+ +SVL C
Sbjct: 353 IAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCA 412
Query: 372 SVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNA 431
V A G+ +H Y+ KA+IES+ +++ MYAKC + A K F+ + ++ V++NA
Sbjct: 413 GVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNA 472
Query: 432 MIEGYSKEEKLSEALDLFHEMRVGFVPPXXXXXXXXXXXXXXXXXXXXXKQIHGLIIKYG 491
+ +GY++ ++A D++ M++ V P ++G IIK+G
Sbjct: 473 LAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHG 532
Query: 492 VFLDVFAGSALIDAYSKCFSNKDARLVFDEMN-QRDIVVWNAMLLGYTQQLENEEAIKLY 550
+ ALI+ ++KC + A ++FD+ ++ V WN M+ GY + EEA+ +
Sbjct: 533 FDSECHVAHALINMFTKCDALAAAIVLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAVATF 592
Query: 551 LELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC 610
++ + + +PN TF ++ AA+ L +L+ G H+ LI+ G + + ++L+DMYAKC
Sbjct: 593 RQMKVEKFQPNAVTFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYAKC 652
Query: 611 GSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVL 670
G +E + + F + K + WN+M+ A HG A+ LF M L+P+ ++F+ VL
Sbjct: 653 GMIESSEKCFIEISNKYIVSWNTMLSAYAAHGLASCAVSLFLSMQENELKPDSVSFLSVL 712
Query: 671 SACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISID 729
SAC HAGL+E+G F+ M IE +EHYA +V LLG+ E M +
Sbjct: 713 SACRHAGLVEEGKRIFEEMGERHKIEAEVEHYACMVDLLGKAGLFGEAVEMMRRMRVKTS 772
Query: 730 PMDSGSYTLLSNTFACNSMWADAK--QVRKKMDLDGLMKEAGRSWIEVNN 777
G+ L S+ CN ++A Q+ K L+ R EVNN
Sbjct: 773 VGVWGAL-LNSSRMHCNLWLSNAALCQLVKLEPLNPSHYSQDRRLGEVNN 821
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 207/660 (31%), Positives = 352/660 (53%)
Query: 54 FLQRPLPDNFNNKRITCYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTM 113
F+ R L + N + +++HA + GL F + L+ YS + + +F +
Sbjct: 9 FISRALSSSSNLNEL---RRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRV 65
Query: 114 SE-RNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLXXXXX 172
S +N+ W+S++ ++K G EAL F G L+ PD Y SVI AC L
Sbjct: 66 SPAKNVYLWNSIIRAFSKNGLFPEALE-FYGKLRESKVSPDKYTFPSVIKACAGLFDAEM 124
Query: 173 XXXXXEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIIT 232
EQ ++ GF+ D++VG +L+++Y++ G + A+ VFD + V+ VSW ++I+
Sbjct: 125 GDLVYEQ----ILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLIS 180
Query: 233 GYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGM 292
GY G + +L ++++++ + +V D + +SSVL A L V G+ +H L+ G+
Sbjct: 181 GYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNS 240
Query: 293 DVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMT 352
V V N L+ Y K R ARR+FDE++V++ +S+ T+I GY++ E++++F E
Sbjct: 241 VVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-N 299
Query: 353 RSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLT 412
+KPD SSVL +CG + L + ++ Y KA ++ V+N L+D+YAKC +
Sbjct: 300 LDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMI 359
Query: 413 EARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPXXXXXXXXXXXXX 472
AR VF+ M ++ VS+N++I GY + L EA+ LF M +
Sbjct: 360 TARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVST 419
Query: 473 XXXXXXXXKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNA 532
K +H IK G+ +D+ +ALID Y+KC D+ +F M D V WN
Sbjct: 420 RLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNT 479
Query: 533 MLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLG 592
++ + + +++ ++ S+ P+ TF + ++L + + G++ H L++ G
Sbjct: 480 VISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFG 539
Query: 593 LDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFR 652
+ + I +ALI+MY+KCG LE++ F + +DV W MI +GE KAL F
Sbjct: 540 YESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFA 599
Query: 653 EMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSM-AGFGIEPGMEHYASVVSLLGRN 711
+M G+ P+ + F+ ++ ACSH+GL+++GL F+ M + I+P +EHYA VV LL R+
Sbjct: 600 DMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRS 659
|
|
| TAIR|locus:2098901 AT3G61170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 842 (301.5 bits), Expect = 3.0e-91, Sum P(2) = 3.0e-91
Identities = 196/635 (30%), Positives = 334/635 (52%)
Query: 190 DRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQ 249
+RD + +++ Y+ + + DA+ +F VK +SW +I+GY KSG + NLF +
Sbjct: 56 ERDEFTWNTMIVAYSNSRRLSDAEKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWE 115
Query: 250 MRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGR 309
M+ + ++Y L SVL C+ L + G+QIH H ++ G +DV+V+N L+ Y++C R
Sbjct: 116 MQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKR 175
Query: 310 VKMARRLFDEIE-VKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLT 368
+ A LF+ +E KN ++WT+++ GY QN F +A++ F ++ R G + + + SVLT
Sbjct: 176 ISEAEYLFETMEGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLT 235
Query: 369 SCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVS 428
+C SV A G QVH K+ +++ +V+++L+DMYAKC + AR + + M +VVS
Sbjct: 236 ACASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVS 295
Query: 429 YNAMIEGYSKEEKLSEALDLF---HE--MRVG-FVPPXXXXXXXXXXXXXXXXXXXXXKQ 482
+N+MI G ++ + EAL +F HE M++ F P
Sbjct: 296 WNSMIVGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSILNCFALSRTEMKIASSA---- 351
Query: 483 IHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLE 542
H LI+K G +AL+D Y+K A VF+ M ++D++ W A++ G T
Sbjct: 352 -HCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGS 410
Query: 543 NEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSA 602
+EA+KL+ + + P++ A++++A++ L L+ GQQ H + IK G + ++
Sbjct: 411 YDEALKLFCNMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNS 470
Query: 603 LIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREM-IIEGLEP 661
L+ MY KCGSLEDA F S +D+ W +I A +G A F M + G+ P
Sbjct: 471 LVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAKNGLLEDAQRYFDSMRTVYGITP 530
Query: 662 NYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYA 721
+ ++ +G D + Q + +EP + ++++ R N+E G A
Sbjct: 531 GPEHYACMIDLFGRSG---DFVKVEQLLHQMEVEPDATVWKAILAA-SRKHGNIENGERA 586
Query: 722 AEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHA 781
A+ + ++P ++ Y LSN ++ +A VR+ M + KE G SW+E +VH+
Sbjct: 587 AKTLMELEPNNAVPYVQLSNMYSAAGRQDEAANVRRLMKSRNISKEPGCSWVEEKGKVHS 646
Query: 782 FVARDKSHHAADLTYSILDNLILHIKGVGYVPNTS 816
F++ D+ H YS +D ++L IK GY + S
Sbjct: 647 FMSEDRRHPRMVEIYSKVDEMMLLIKEAGYFADMS 681
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 213/613 (34%), Positives = 336/613 (54%)
Query: 103 LDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVIC 162
L A LFD R+ S+ SL+ +++ G +EA +F+ ++G D I SSV+
Sbjct: 43 LYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGM-EMDCSIFSSVL- 100
Query: 163 ACTQLXXXXXXXXXXEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVK 222
++ Q+H IK GF DV VGTSL++ Y K + D + VFD + +
Sbjct: 101 ---KVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKER 157
Query: 223 TAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGG-GKQI 281
V+WTT+I+GY ++ +D L LF +M+ + + ++ L + + VGG G Q+
Sbjct: 158 NVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAE-EGVGGRGLQV 216
Query: 282 HAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFD 341
H V++ G+ + V N L++ Y KCG V+ AR LFD+ EVK++++W ++I GY N D
Sbjct: 217 HTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLD 276
Query: 342 REAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSL 401
EA+ +F M + + + + +SV+ C +++ L Q+H K D ++ +L
Sbjct: 277 LEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTAL 336
Query: 402 VDMYAKCDSLTEARKVF-DVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPX 460
+ Y+KC ++ +A ++F ++ NVVS+ AMI G+ + + EA+DLF EM+ V P
Sbjct: 337 MVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPN 396
Query: 461 XXXXXXXXXXXXXXXXXXXXKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFD 520
++H ++K G+AL+DAY K ++A VF
Sbjct: 397 EFTYSVILTALPVISPS----EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFS 452
Query: 521 EMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALIT--AASNLGSL 578
++ +DIV W+AML GY Q E E AIK++ EL +PNEFTF++++ AA+N S+
Sbjct: 453 GIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATN-ASM 511
Query: 579 KHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTN 638
G+QFH IK LD ++SAL+ MYAK G++E A E F KD+ WNSMI
Sbjct: 512 GQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGY 571
Query: 639 AHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMA-GFGIEPG 697
A HG+ MKAL +F+EM ++ + +TF+GV +AC+HAGL+E+G +F M I P
Sbjct: 572 AQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPT 631
Query: 698 MEHYASVVSLLGR 710
EH + +V L R
Sbjct: 632 KEHNSCMVDLYSR 644
|
|
| TAIR|locus:2064828 AT2G40720 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
Identities = 218/671 (32%), Positives = 349/671 (52%)
Query: 72 KQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSE-------RNLVSWSSL 124
K +H + + G + D F+A L+ Y K LD A ++FD S+ R++ W+S+
Sbjct: 80 KTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSM 139
Query: 125 VSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICA-CTQLXXXXXXXXXXEQMHSF 183
+ Y K +E + F L G RPD + LS V+ C + +Q+H F
Sbjct: 140 IDGYFKFRRFKEGVGCFRRMLVFGV-RPDAFSLSIVVSVMCKE---GNFRREEGKQIHGF 195
Query: 184 VIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKT-AVSWTTIITGYVKSGRSDL 242
++++ D D ++ T+L+++Y K G DA VF + K+ V W +I G+ SG +
Sbjct: 196 MLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICES 255
Query: 243 SLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMD 302
SL+L+ + V + L ACS + G G+QIH V++ G+ D V L+
Sbjct: 256 SLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLS 315
Query: 303 FYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFA 362
YSKCG V A +F + K + W ++ Y +N + A+ LF M + PD F
Sbjct: 316 MYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFT 375
Query: 363 CSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMA 422
S+V++ C + G+ VHA FK I+S + ++++L+ +Y+KC +A VF M
Sbjct: 376 LSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSME 435
Query: 423 DRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVG--FVPPXXXXXXXXXXXXXXXXXXXXX 480
++++V++ ++I G K K EAL +F +M+ + P
Sbjct: 436 EKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFG 495
Query: 481 KQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQ 540
Q+HG +IK G+ L+VF GS+LID YSKC + A VF M+ ++V WN+M+ Y++
Sbjct: 496 LQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRN 555
Query: 541 LENEEAIKLYLELLLSQQR-PNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFI 599
E +I L+ L+LSQ P+ + +++ A S+ SL G+ H + ++LG+ D+ +
Sbjct: 556 NLPELSIDLF-NLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHL 614
Query: 600 TSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGL 659
+ALIDMY KCG + A F K + WN MI HG+ + AL LF EM G
Sbjct: 615 KNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGE 674
Query: 660 EPNYITFVGVLSACSHAGLIEDGLDHFQSMA-GFGIEPGMEHYASVVSLLGRNVWNVELG 718
P+ +TF+ ++SAC+H+G +E+G + F+ M +GIEP MEHYA++V LLGR E
Sbjct: 675 SPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAY 734
Query: 719 RYAAEMAISID 729
+ M I D
Sbjct: 735 SFIKAMPIEAD 745
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SVA5 | PP357_ARATH | No assigned EC number | 0.5558 | 0.8962 | 0.8800 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 819 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-132 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-103 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-93 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-79 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-78 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-62 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-59 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-51 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-31 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 414 bits (1066), Expect = e-132
Identities = 216/667 (32%), Positives = 346/667 (51%), Gaps = 34/667 (5%)
Query: 177 GEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVK 236
G ++ S + S V +G ++++++ + G + A +VF + + SW ++ GY K
Sbjct: 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAK 164
Query: 237 SGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSV 296
+G D +L L+++M V D Y VL C + + G+++HAHV+R G +DV V
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224
Query: 297 INVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGW 356
+N L+ Y KCG V AR +FD + ++ ISW +I GY +N E ++LF M
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284
Query: 357 KPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARK 416
PD +SV+++C + GR++H Y K D V NSL+ MY S EA K
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
Query: 417 VFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFS 476
VF M ++ VS+ AMI GY K +AL+ + M V P +T S+L + +
Sbjct: 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404
Query: 477 LESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLG 536
L+ ++H L + G+ V +ALI+ YSKC A VF + ++D++ W +++ G
Sbjct: 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG 464
Query: 537 YTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFD 596
EA+ + ++LL+ + PN T A ++A + +G+L G++ H H+++ G+ FD
Sbjct: 465 LRLNNRCFEALIFFRQMLLTLK-PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523
Query: 597 SFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMII 656
F+ +AL+D+Y +CG + A+ F S KDV WN ++ HG+ A+ LF M+
Sbjct: 524 GFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582
Query: 657 EGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGR----- 710
G+ P+ +TF+ +L ACS +G++ GL++F SM + I P ++HYA VV LLGR
Sbjct: 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642
Query: 711 ---------------NVW-----------NVELGRYAAEMAISIDPMDSGSYTLLSNTFA 744
VW +VELG AA+ +DP G Y LL N +A
Sbjct: 643 EAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702
Query: 745 CNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLIL 804
W + +VRK M +GL + G SW+EV +VHAF+ D+SH ++L+
Sbjct: 703 DAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYE 762
Query: 805 HIKGVGY 811
+K G
Sbjct: 763 KMKASGL 769
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 336 bits (864), Expect = e-103
Identities = 172/559 (30%), Positives = 297/559 (53%), Gaps = 11/559 (1%)
Query: 89 LANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVG 148
L N +L + + +L A +F M ER+L SW+ LV Y K GY +EAL ++ L G
Sbjct: 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182
Query: 149 NGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGS 208
RPD Y V+ C GG G ++H+ V++ GF+ DV V +L+ +Y K G
Sbjct: 183 V-RPDVYTFPCVLRTC----GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237
Query: 209 VDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSA 268
V A+ VFD + + +SW +I+GY ++G L LF MRE V D ++SV+SA
Sbjct: 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA 297
Query: 269 CSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISW 328
C +L G+++H +V++ G +DVSV N L+ Y G A ++F +E K+ +SW
Sbjct: 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW 357
Query: 329 TTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFK 388
T +I GY +N +A++ + M + PD+ +SVL++C + L+ G ++H + +
Sbjct: 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417
Query: 389 ANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDL 448
+ S V N+L++MY+KC + +A +VF + +++V+S+ ++I G + EAL
Sbjct: 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477
Query: 449 FHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSK 508
F +M + + P +T ++ L + + +L K+IH +++ G+ D F +AL+D Y +
Sbjct: 478 FRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536
Query: 509 CFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAAL 568
C A F+ +++D+V WN +L GY + A++L+ ++ S P+E TF +L
Sbjct: 537 CGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
Query: 569 ITAASNLGSLKHG-QQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWK- 626
+ A S G + G + FH+ K + + + ++D+ + G L +AY
Sbjct: 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP 655
Query: 627 DVACWNSMI--CTNAHHGE 643
D A W +++ C H E
Sbjct: 656 DPAVWGALLNACRIHRHVE 674
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 306 bits (785), Expect = 5e-93
Identities = 173/511 (33%), Positives = 267/511 (52%), Gaps = 35/511 (6%)
Query: 342 REAMKLFTEMTRSG--WKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKN 399
REA++LF E+ +G + +++ +C +++++ + V+ + + E D ++ N
Sbjct: 104 REALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162
Query: 400 SLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPP 459
++ M+ KC L +AR++FD M +RN+ S+ +I G EA LF EM
Sbjct: 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222
Query: 460 GLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVF 519
TFV +L S+ + S + +Q+H ++K GV D F ALID YSKC +DAR VF
Sbjct: 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282
Query: 520 DEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLK 579
D M ++ V WN+ML GY +EEA+ LY E+ S ++FTF+ +I S L L+
Sbjct: 283 DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342
Query: 580 HGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNA 639
H +Q H LI+ G D +AL+D+Y+K G +EDA F K++ WN++I
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402
Query: 640 HHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMA-GFGIEPGM 698
+HG KA+ +F MI EG+ PN++TF+ VLSAC ++GL E G + FQSM+ I+P
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462
Query: 699 EHYASVVSLLGR--------------------NVW-----------NVELGRYAAEMAIS 727
HYA ++ LLGR N+W N+ELGR AAE
Sbjct: 463 MHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522
Query: 728 IDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDK 787
+ P +Y +L N + + A+A +V + + GL +WIEV + H+F + D+
Sbjct: 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582
Query: 788 SHHAADLTYSILDNLILHIKGVGYVPNTSAL 818
H + Y LD L+ I GYV + L
Sbjct: 583 LHPQSREIYQKLDELMKEISEYGYVAEENEL 613
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 274 bits (701), Expect = 1e-79
Identities = 139/446 (31%), Positives = 234/446 (52%), Gaps = 1/446 (0%)
Query: 237 SGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSV 296
G+ + +L L M+E V D+ ++ C + V G ++ + L + V +
Sbjct: 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123
Query: 297 INVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGW 356
N ++ + + G + A +F ++ +++ SW L+GGY + + EA+ L+ M +G
Sbjct: 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183
Query: 357 KPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARK 416
+PD + VL +CG + L +GR+VHA+ + E D V N+L+ MY KC + AR
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243
Query: 417 VFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFS 476
VFD M R+ +S+NAMI GY + + E L+LF MR V P L+T S++ +
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
Query: 477 LESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLG 536
+++HG ++K G +DV ++LI Y S +A VF M +D V W AM+ G
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363
Query: 537 YTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFD 596
Y + ++A++ Y + P+E T A++++A + LG L G + H + GL
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423
Query: 597 SFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMII 656
+ +ALI+MY+KC ++ A E F + KDV W S+I + +AL+ FR+M++
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483
Query: 657 EGLEPNYITFVGVLSACSHAGLIEDG 682
L+PN +T + LSAC+ G + G
Sbjct: 484 T-LKPNSVTLIAALSACARIGALMCG 508
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 270 bits (691), Expect = 3e-78
Identities = 152/465 (32%), Positives = 252/465 (54%), Gaps = 9/465 (1%)
Query: 72 KQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKK 131
++VHA + G + D + N L+ Y K D+ AR +FD M R+ +SW++++S Y +
Sbjct: 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFEN 266
Query: 132 GYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDR 191
G E L +F ++ + PD ++SVI AC LG +G +MH +V+K+GF
Sbjct: 267 GECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDER----LGREMHGYVVKTGFAV 321
Query: 192 DVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMR 251
DV V SL+ +Y GS +A+ VF + K AVSWT +I+GY K+G D +L + M
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 252 ETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVK 311
+ +V D+ ++SVLSAC+ L + G ++H R+G+ V V N L++ YSKC +
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441
Query: 312 MARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCG 371
A +F I K++ISWT++I G N+ EA+ F +M + KP+ + L++C
Sbjct: 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACA 500
Query: 372 SVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNA 431
+ AL G+++HA+ + I D F+ N+L+D+Y +C + A F+ ++VVS+N
Sbjct: 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNI 559
Query: 432 MIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLL-GLSSSVFSLESSKQIHGLIIKY 490
++ GY K S A++LF+ M V P +TF+SLL S S + + H + KY
Sbjct: 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619
Query: 491 GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMN-QRDIVVWNAML 534
+ ++ + ++D + +A ++M D VW A+L
Sbjct: 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALL 664
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 222 bits (567), Expect = 3e-62
Identities = 128/409 (31%), Positives = 212/409 (51%), Gaps = 14/409 (3%)
Query: 217 DGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMR---ETDVVHDKYLLSSVLSACSMLQ 273
D + K+ VS + I V GR +L LF + + Y +++ AC L+
Sbjct: 80 DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTY--DALVEACIALK 137
Query: 274 FVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIG 333
+ K ++ HV G D ++N ++ + KCG + ARRLFDE+ +N+ SW T+IG
Sbjct: 138 SIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197
Query: 334 GYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIES 393
G + REA LF EM G + +L + + + G+Q+H K +
Sbjct: 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257
Query: 394 DNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMR 453
D FV +L+DMY+KC + +AR VFD M ++ V++N+M+ GY+ EAL L++EMR
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317
Query: 454 VGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNK 513
V TF ++ + S + LE +KQ H +I+ G LD+ A +AL+D YSK +
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377
Query: 514 DARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAAS 573
DAR VFD M +++++ WNA++ GY +A++++ ++ PN TF A+++A
Sbjct: 378 DARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437
Query: 574 NLGSLKHGQQF-----HNHLIKLGLDFDSFITSALIDMYAKCGSLEDAY 617
G + G + NH IK + + +I++ + G L++AY
Sbjct: 438 YSGLSEQGWEIFQSMSENHRIKP----RAMHYACMIELLGREGLLDEAY 482
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 4e-59
Identities = 105/317 (33%), Positives = 171/317 (53%), Gaps = 5/317 (1%)
Query: 66 KRITCYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLV 125
K I C K V+ + SG + D ++ N +L + K L AR+LFD M ERNL SW +++
Sbjct: 137 KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTII 196
Query: 126 SMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVI 185
G EA +F + G + ++ A LG G+Q+H V+
Sbjct: 197 GGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSA----RAGQQLHCCVL 251
Query: 186 KSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLN 245
K+G D +V +L+++Y+K G ++DA+ VFDG+ KT V+W +++ GY G S+ +L
Sbjct: 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311
Query: 246 LFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYS 305
L+ +MR++ V D++ S ++ S L + KQ HA ++R G +D+ L+D YS
Sbjct: 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371
Query: 306 KCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSS 365
K GR++ AR +FD + KN+ISW LI GY + +A+++F M G P+ +
Sbjct: 372 KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431
Query: 366 VLTSCGSVEALEQGRQV 382
VL++C EQG ++
Sbjct: 432 VLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 8e-51
Identities = 102/336 (30%), Positives = 173/336 (51%), Gaps = 11/336 (3%)
Query: 183 FVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDL 242
V SGF+ D Y+ ++ ++ K G + DA+ +FD + + SW TII G V +G
Sbjct: 148 HVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYRE 207
Query: 243 SLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMD 302
+ LF +M E + +L A + L G+Q+H VL+ G+ D V L+D
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 303 FYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFA 362
YSKCG ++ AR +FD + K ++W +++ GY + + EA+ L+ EM SG D F
Sbjct: 268 MYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327
Query: 363 CSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMA 422
S ++ + LE +Q HA + D +LVD+Y+K + +AR VFD M
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 423 DRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLL------GLSSSVFS 476
+N++S+NA+I GY + ++A+++F M V P +TF+++L GLS +
Sbjct: 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447
Query: 477 L-ESSKQIHGL---IIKYGVFLDVFAGSALID-AYS 507
+ +S + H + + Y +++ L+D AY+
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 7e-31
Identities = 84/336 (25%), Positives = 156/336 (46%), Gaps = 4/336 (1%)
Query: 430 NAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIK 489
N+ + +L +AL L M+ VP +V+L L ++E ++ +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 490 YGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKL 549
L V G+A++ + + A VF +M +RD+ WN ++ GY + +EA+ L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 550 YLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK 609
Y +L + RP+ +TF ++ + L G++ H H+++ G + D + +ALI MY K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 610 CGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGV 669
CG + A F +D WN+MI +GE ++ L LF M ++P+ +T V
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 670 LSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISID 729
+SAC G G + M G+ ++ G SV + L + ++ A ++ ++
Sbjct: 295 ISACELLGDERLGRE----MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 730 PMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLM 765
D+ S+T + + + N + A + M+ D +
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 4e-09
Identities = 81/353 (22%), Positives = 156/353 (44%), Gaps = 38/353 (10%)
Query: 35 RNPSLQSFNISTKRSVLAWFLQRPLPDNFNNKRITCYKQVHAQIAISGLQCDTFLANMLL 94
RNP+L +FN+ SV A +++ I +V + +GL+ D L L+
Sbjct: 433 RNPTLSTFNMLM--SVCA-----------SSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479
Query: 95 RNYSKANDLDGARKLFDTMS----ERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNG 150
+K+ +D ++F M E N+ ++ +L+ + G +A + G ++ N
Sbjct: 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY-GIMRSKNV 538
Query: 151 RPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRD-VYVGTSLMNLYAKNGSV 209
+PD + +++I AC Q G +V +M + D D + VG +LM A G V
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAET--HPIDPDHITVG-ALMKACANAGQV 595
Query: 210 DDAKFVFDGLM---VK-TAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSV 265
D AK V+ + +K T +T + + G D +L++++ M++ V D+ S++
Sbjct: 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655
Query: 266 LSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIE---V 322
+ + +I ++G+ + + LM S K A L+++I+ +
Sbjct: 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715
Query: 323 KNIIS-----WTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSC 370
+ +S T L G N + A+++ +EM R G P+ S +L +
Sbjct: 716 RPTVSTMNALITALCEG---NQLPK-ALEVLSEMKRLGLCPNTITYSILLVAS 764
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 8e-09
Identities = 68/293 (23%), Positives = 124/293 (42%), Gaps = 53/293 (18%)
Query: 68 ITCYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSM 127
+ C K++HA + +G+ D FL N LL Y + ++ A F++ E+++VSW+ L++
Sbjct: 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVSWNILLTG 563
Query: 128 YTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDG-------------- 173
Y G G A+ +F ++ G PD+ S++CAC++ G G
Sbjct: 564 YVAHGKGSMAVELFNRMVESGV-NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622
Query: 174 -------------GNVGE--QMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVD----DAKF 214
G G+ + ++F+ K D V +L+N + V+ A+
Sbjct: 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQH 682
Query: 215 VFDGLMVKTAVSWTTIITG-YVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQ 273
+F+ + +V + ++ Y +G+ D + MRE + D CS ++
Sbjct: 683 IFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD--------PGCSWVE 732
Query: 274 FVGGGKQIHAHVLRRGMGMDVSVINVLMD-FYSK---CGRVKMARRLFDEIEV 322
G ++HA + + IN +++ FY K G DEIEV
Sbjct: 733 VKG---KVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEV 782
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 425 NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLL 468
+VV+YN +I+GY K+ K+ EAL LF+EM+ + P + T+ L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 3e-08
Identities = 85/417 (20%), Positives = 169/417 (40%), Gaps = 69/417 (16%)
Query: 342 REAMKLFTEMTRSGWKPDDFACSSVLTSC---GSVEALEQGRQVHAYSFKANIESDNFVK 398
++L E +G K D ++++++C G V+A+ +V A +E++
Sbjct: 457 LRVLRLVQE---AGLKADCKLYTTLISTCAKSGKVDAM---FEVFHEMVNAGVEANVHTF 510
Query: 399 NSLVDMYAKCDSLTEARKVFDVMADRNV----VSYNAMIEGYSKEEKLSEALDLFHEMRV 454
+L+D A+ + +A + +M +NV V +NA+I + + A D+ EM+
Sbjct: 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570
Query: 455 GFVP--PGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGV--FLDVFAGSALIDAYSKCF 510
P P +T +L+ ++ ++ +K+++ +I +Y + +V+ + +++ S+
Sbjct: 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY--TIAVNSCSQKG 628
Query: 511 SNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALIT 570
A ++D+M ++ + P+E F+AL+
Sbjct: 629 DWDFALSIYDDMKKKGVK-------------------------------PDEVFFSALVD 657
Query: 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDA---YETFGSTTWK- 626
A + G L + K G+ + S+L+ + + + A YE S +
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
Query: 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHF 686
V+ N++I + KAL + EM GL PN IT+ +L A + GLD
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777
Query: 687 QSMAGFGIEPGMEHYASVVSL----------LGRNVWNVELGRYAAE-----MAISI 728
GI+P + + L LG V + + GR E A+ +
Sbjct: 778 SQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-07
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 323 KNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSC 370
+++++ TLI GY + EA+KLF EM + G KP+ + S ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 5e-06
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 427 VSYNAMIEGYSKEEKLSEALDLFHEMR 453
V+YN++I GY K KL EAL+LF EM+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 526 DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA 571
D+V +N ++ GY ++ + EEA+KL+ E+ +PN +T++ LI
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 2e-05
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 626 KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH 675
DV +N++I G+ +AL LF EM G++PN T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 399 NSLVDMYAKCDSLTEARKVFDVMADR----NVVSYNAMIEGYSK 438
N+L+D Y K + EA K+F+ M R NV +Y+ +I+G K
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 427 VSYNAMIEGYSKEEKLSEALDLFHEMRV-GFVP 458
V+YN +I+G K ++ EAL+LF EM+ G P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 3e-05
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 222 KTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSAC 269
V++ T+I GY K G+ + +L LFN+M++ + + Y S ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 425 NVVSYNAMIEGYSKEEKLSEALDLFHEMR 453
+VV+YN +I+G + ++ EA++L EM
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 6e-05
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 293 DVSVINVLMDFYSKCGRVKMARRLFDEIEVK----NIISWTTLIGGY 335
DV N L+D Y K G+V+ A +LF+E++ + N+ +++ LI G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 11/28 (39%), Positives = 22/28 (78%)
Query: 225 VSWTTIITGYVKSGRSDLSLNLFNQMRE 252
V++ ++I+GY K+G+ + +L LF +M+E
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 326 ISWTTLIGGYMQNSFDREAMKLFTEMTRSG 355
+++ +LI GY + EA++LF EM G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 225 VSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHD 258
V++ T+I G K+GR + +L LF +M+E + D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 91 NMLLRNYSKANDLDGARKLFDTMSER----NLVSWSSLVSMYTK 130
N L+ Y K ++ A KLF+ M +R N+ ++S L+ K
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 326 ISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDD 360
+++ TLI G + EA++LF EM G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 819 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.8 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.75 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.74 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.73 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.72 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.7 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.67 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.54 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.51 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.47 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.41 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.4 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.37 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.36 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.36 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.36 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.35 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.34 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.33 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.32 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.27 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.27 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.27 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.26 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.24 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.18 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.12 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.12 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.1 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.1 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.08 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.07 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.06 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.06 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.06 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.06 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.05 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.02 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.98 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.97 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.96 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.95 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.95 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.91 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.9 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.89 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.82 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.81 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.79 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.79 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.74 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.73 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.7 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.69 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.69 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.53 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.53 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.52 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.46 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.45 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.41 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.39 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.38 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.37 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.37 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.37 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.35 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.33 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.3 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.28 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.23 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.23 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.23 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.23 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.16 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.1 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.07 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.07 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.06 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.06 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.04 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.04 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.98 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.95 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.92 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.91 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.91 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.88 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.88 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.86 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.85 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.83 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.83 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.82 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.78 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.78 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.77 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.75 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.74 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.69 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.69 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.64 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.63 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.6 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.53 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.51 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.5 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.48 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.39 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.36 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.36 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.3 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.29 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.18 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.18 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.16 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 97.15 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.14 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.12 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.09 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.07 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.04 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.0 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.97 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.97 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.95 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.95 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.93 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.91 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.89 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.87 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.87 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.85 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.84 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.83 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.83 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.82 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.81 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.81 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.79 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.76 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.75 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.75 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.73 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.69 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.63 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.51 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.51 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.48 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.42 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.38 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.3 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.29 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.24 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.22 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.2 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.17 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.16 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.12 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.9 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.78 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.74 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.72 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.61 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.56 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.42 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.39 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.37 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.22 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.1 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.98 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.91 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.9 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.81 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.76 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.6 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.59 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.39 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.36 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.32 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.25 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.24 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.21 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.02 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.0 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.98 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.88 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.79 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.76 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.63 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.55 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.16 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.13 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.0 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 92.95 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.95 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.9 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.75 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.6 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.6 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.4 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 92.31 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.12 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.09 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.04 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.9 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.9 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.89 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.57 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 91.22 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.09 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.92 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 90.3 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.28 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 90.2 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.07 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.03 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 89.31 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.06 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 88.94 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.93 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 88.84 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.79 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.51 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.87 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 87.82 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.78 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.64 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.57 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.42 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.35 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 87.32 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.04 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.99 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.83 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.55 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 86.48 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.43 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.32 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.04 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 85.89 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.84 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.6 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.47 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.99 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.67 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.58 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.74 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.6 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 83.55 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.16 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 82.57 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 82.4 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.23 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.67 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 81.44 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 80.98 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 80.94 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 80.43 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-113 Score=1006.09 Aligned_cols=696 Identities=32% Similarity=0.579 Sum_probs=681.6
Q ss_pred CCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcc
Q 039792 115 ERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVY 194 (819)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~ 194 (819)
.++..++|.+|.+|++.|++++|+.+|++| ...|+.|+..+|..++++|...+.+. .+.++|..+.+.|..+++.
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m-~~~g~~~~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~ 122 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESM-QELRVPVDEDAYVALFRLCEWKRAVE----EGSRVCSRALSSHPSLGVR 122 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHH-HhcCCCCChhHHHHHHHHHhhCCCHH----HHHHHHHHHHHcCCCCCch
Confidence 467778999999999999999999999999 78889999999999999999888755 7889999999999999999
Q ss_pred hhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC
Q 039792 195 VGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQF 274 (819)
Q Consensus 195 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 274 (819)
++|+|+.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|+..++
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 039792 275 VGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRS 354 (819)
Q Consensus 275 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (819)
+..+.++|..+.+.|+.||..++|+|+.+|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHH
Q 039792 355 GWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIE 434 (819)
Q Consensus 355 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 434 (819)
|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|.++|+++||++|.
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHH
Q 039792 435 GYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKD 514 (819)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 514 (819)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++|+||++|+++|++++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 039792 515 ARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLD 594 (819)
Q Consensus 515 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 594 (819)
|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.. +++||..||+.+|.+|++.|+++.+.+++..+.+.|+.
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999986 59999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 039792 595 FDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACS 674 (819)
Q Consensus 595 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 674 (819)
+|..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|+
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcc--------------------cc-----------hhhhHHHHH
Q 039792 675 HAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRN--------------------VW-----------NVELGRYAA 722 (819)
Q Consensus 675 ~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~--------------------~w-----------~~~~a~~~~ 722 (819)
+.|++++|.++|++|.+ +|+.|+..||+||+++|+|+ .| |++.|+.++
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99999999999999995 99999999999999999998 34 889999999
Q ss_pred HHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHH
Q 039792 723 EMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNL 802 (819)
Q Consensus 723 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l 802 (819)
+++++++|++++.|+.|+|+|+..|+|++|.++++.|+++|++|+||+||||++|++|.|++||++||+.++||++|++|
T Consensus 681 ~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l 760 (857)
T PLN03077 681 QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGF 760 (857)
T ss_pred HHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcCCCCC
Q 039792 803 ILHIKGVGYVPNTSA 817 (819)
Q Consensus 803 ~~~~~~~~~~~~~~~ 817 (819)
..+|++.||+||++.
T Consensus 761 ~~~~~~~g~~~~~~~ 775 (857)
T PLN03077 761 YEKMKASGLAGSESS 775 (857)
T ss_pred HHHHHhCCcCCCcch
Confidence 999999999999874
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-94 Score=846.26 Aligned_cols=642 Identities=27% Similarity=0.476 Sum_probs=621.4
Q ss_pred CcchhhHHHHhhccCCCCCCCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCCCCcchHHHH
Q 039792 45 STKRSVLAWFLQRPLPDNFNNKRITCYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSL 124 (819)
Q Consensus 45 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l 124 (819)
.++..+|..++..|... +.+..+.++|..+.+.|..++..++|.|+.+|+++|+++.|+++|++|++||+++||++
T Consensus 83 ~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~l 158 (857)
T PLN03077 83 PVDEDAYVALFRLCEWK----RAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVL 158 (857)
T ss_pred CCChhHHHHHHHHHhhC----CCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHH
Confidence 44555677777777665 77889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHH
Q 039792 125 VSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYA 204 (819)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~ 204 (819)
|++|++.|++++|+++|++| ...|+.||.+||+++|++|+..+++. .++++|..+.+.|+.||+.++|+||++|+
T Consensus 159 i~~~~~~g~~~~A~~~f~~M-~~~g~~Pd~~t~~~ll~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~n~Li~~y~ 233 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRM-LWAGVRPDVYTFPCVLRTCGGIPDLA----RGREVHAHVVRFGFELDVDVVNALITMYV 233 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHhCCccchh----hHHHHHHHHHHcCCCcccchHhHHHHHHh
Confidence 99999999999999999999 77899999999999999999988865 78999999999999999999999999999
Q ss_pred hcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHH
Q 039792 205 KNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAH 284 (819)
Q Consensus 205 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 284 (819)
++|++++|.++|++|+.+|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|..
T Consensus 234 k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred cCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHH
Q 039792 285 VLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACS 364 (819)
Q Consensus 285 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 364 (819)
+.+.|+.||..+||+|+.+|+++|++++|.++|++|..+|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 039792 365 SVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSE 444 (819)
Q Consensus 365 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 444 (819)
.++.+|++.|+++.|.++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||++|.+|+++|+.++
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC
Q 039792 445 ALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ 524 (819)
Q Consensus 445 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 524 (819)
|+++|++|.. +++||..||+.+|.+|++.|+++.+.+++..+.+.|+.++..++|+||++|+++|++++|.++|+++ .
T Consensus 474 A~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~ 551 (857)
T PLN03077 474 ALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E 551 (857)
T ss_pred HHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C
Confidence 9999999985 5999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH-HhCCCCchhHHHHH
Q 039792 525 RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLI-KLGLDFDSFITSAL 603 (819)
Q Consensus 525 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l 603 (819)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|.+++|.++|+.|. +.|+.|+..+|+++
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 78999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCC-CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHH
Q 039792 604 IDMYAKCGSLEDAYETFGSTT-WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIED 681 (819)
Q Consensus 604 i~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~ 681 (819)
+++|++.|++++|.+++++|+ +||..+|++|+.+|..+|+.+.+....+++.+ +.|+.. .|..|.+.|+..|+|++
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHH
Confidence 999999999999999999997 99999999999999999999999999999998 889764 57777789999999999
Q ss_pred HHHHHHHHHhcCCccCch
Q 039792 682 GLDHFQSMAGFGIEPGME 699 (819)
Q Consensus 682 a~~~~~~m~~~g~~p~~~ 699 (819)
|.++.+.|.+.|++++..
T Consensus 710 a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 710 VARVRKTMRENGLTVDPG 727 (857)
T ss_pred HHHHHHHHHHcCCCCCCC
Confidence 999999999999988753
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-83 Score=736.05 Aligned_cols=529 Identities=30% Similarity=0.486 Sum_probs=500.2
Q ss_pred CCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCC-CCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHH
Q 039792 220 MVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETD-VVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVIN 298 (819)
Q Consensus 220 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 298 (819)
..++..+|+.+|.+|++.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34577899999999999999999999999998764 78999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhh
Q 039792 299 VLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQ 378 (819)
Q Consensus 299 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 378 (819)
.|+++|+++|++++|.++|++|.+||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 039792 379 GRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVP 458 (819)
Q Consensus 379 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 458 (819)
+.+++..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHH
Q 039792 459 PGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYT 538 (819)
Q Consensus 459 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 538 (819)
||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+|++||++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHH
Q 039792 539 QQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIK-LGLDFDSFITSALIDMYAKCGSLEDAY 617 (819)
Q Consensus 539 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~ 617 (819)
++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 699999999999999988888888877
Q ss_pred HHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC
Q 039792 618 ETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG 697 (819)
Q Consensus 618 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 697 (819)
+++++|. +.|+..+|++|+.+|...|+++.|.
T Consensus 483 ~~~~~~~----------------------------------~~p~~~~~~~Ll~a~~~~g~~~~a~-------------- 514 (697)
T PLN03081 483 AMIRRAP----------------------------------FKPTVNMWAALLTACRIHKNLELGR-------------- 514 (697)
T ss_pred HHHHHCC----------------------------------CCCCHHHHHHHHHHHHHcCCcHHHH--------------
Confidence 7655443 5666666777777777666554443
Q ss_pred chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEEECC
Q 039792 698 MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNN 777 (819)
Q Consensus 698 ~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~ 777 (819)
.+++++++++|++...|+.|+++|++.|+|++|.+++++|+++|++|.||+|||++++
T Consensus 515 ----------------------~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~ 572 (697)
T PLN03081 515 ----------------------LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK 572 (697)
T ss_pred ----------------------HHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC
Confidence 3445556778888999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCcCCCCCC
Q 039792 778 EVHAFVARDKSHHAADLTYSILDNLILHIKGVGYVPNTSAL 818 (819)
Q Consensus 778 ~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~ 818 (819)
++|.|++||++||+.++||++|++|..+|++.||+||++.+
T Consensus 573 ~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~ 613 (697)
T PLN03081 573 QDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENEL 613 (697)
T ss_pred eEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchh
Confidence 99999999999999999999999999999999999998753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-69 Score=620.46 Aligned_cols=568 Identities=17% Similarity=0.224 Sum_probs=500.0
Q ss_pred CCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeee-----HHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHH
Q 039792 190 DRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVS-----WTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSS 264 (819)
Q Consensus 190 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 264 (819)
.++...|..+++.|++.|++++|.++|++|+.++... ++.++.+|++.|..++|+++|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 4567789999999999999999999999998776654 45667789999999999999999974 99999999
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhccc----CCCcccHHHHHHHHHcCCC
Q 039792 265 VLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIE----VKNIISWTTLIGGYMQNSF 340 (819)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~ 340 (819)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999998 5899999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHH--cCCCCChhHHhHHhhhhhcCCCHHHHHHHH
Q 039792 341 DREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFK--ANIESDNFVKNSLVDMYAKCDSLTEARKVF 418 (819)
Q Consensus 341 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 418 (819)
+++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|++|.+ .|+.||..+|++||.+|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 689999999999999999999999999999
Q ss_pred HhcCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCcc
Q 039792 419 DVMAD----RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFL 494 (819)
Q Consensus 419 ~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 494 (819)
+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99986 56799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcC----CCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMN----QRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALIT 570 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 570 (819)
+..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999995 58999999999999999999999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYA----KCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMK 646 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 646 (819)
+|++.|+++.|.+++++|.+.|+.||..+|++|+.++. +++...++...|+.+...+...|+ ++
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HH
Confidence 99999999999999999999999999999999998743 444444444444443333444444 56
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHH
Q 039792 647 ALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAI 726 (819)
Q Consensus 647 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~ 726 (819)
|+.+|++|++.|+.||.+||+.++.++...+..+.+..+++.|...+..|+..+|+++|+.+++.
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--------------- 895 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--------------- 895 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC---------------
Confidence 99999999999999999999999988888889998888888887777888888888888855421
Q ss_pred ccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 039792 727 SIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHI 806 (819)
Q Consensus 727 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~ 806 (819)
.++|..++++|.+.|+.++........--++|.|-.| -.--.+...|..|...+
T Consensus 896 ----------------------~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~~~----aa~~~l~~wl~~~~~~~ 949 (1060)
T PLN03218 896 ----------------------DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVF----AAEVYLLTILKGLKHRL 949 (1060)
T ss_pred ----------------------hHHHHHHHHHHHHcCCCCCcccccCceEEEcccCcch----hHHHHHHHHHHHHHHHH
Confidence 2579999999999999877542111222344444433 11122344566666665
Q ss_pred HhcCCcCC
Q 039792 807 KGVGYVPN 814 (819)
Q Consensus 807 ~~~~~~~~ 814 (819)
...-..|.
T Consensus 950 ~~g~~lp~ 957 (1060)
T PLN03218 950 AAGAKLPN 957 (1060)
T ss_pred hccCcCCc
Confidence 43325554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-70 Score=626.85 Aligned_cols=473 Identities=25% Similarity=0.355 Sum_probs=423.7
Q ss_pred CCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcc
Q 039792 115 ERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVY 194 (819)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~ 194 (819)
.++.++|+.+|.+|++.|++.+|+++|+.|....+..||..||++++.+|++.++.+ .+.++|..+.+.|+.||+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~----~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIR----CVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHH----HHHHHHHHHHHhCCCcchH
Confidence 467889999999999999999999999999544568899999999999999999865 7899999999999999999
Q ss_pred hhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC
Q 039792 195 VGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQF 274 (819)
Q Consensus 195 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 274 (819)
+||.|+++|+++|++++|.++|++|+.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|.
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 039792 275 VGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRS 354 (819)
Q Consensus 275 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (819)
.+.+.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHH
Q 039792 355 GWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIE 434 (819)
Q Consensus 355 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 434 (819)
|+.||..||++++.+|++.|+++.|.++|+.|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHH-hCCccchhhHHHHHHHHHhcCChH
Q 039792 435 GYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIK-YGVFLDVFAGSALIDAYSKCFSNK 513 (819)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~ 513 (819)
+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++++.|.+ .|+.|+..+|++++++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999986 699999998888888888888888
Q ss_pred HHHHHHHhcC-CCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 039792 514 DARLVFDEMN-QRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRP-NEFTFAALITAASNLGSLKHGQQFHNHLIKL 591 (819)
Q Consensus 514 ~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 591 (819)
+|.++|++|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.| +..+|..+++.|++.|++++|.++++.|.+.
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 8877777664 24555555555555555555555555555432 223 2334444444455555555555555544444
Q ss_pred CC
Q 039792 592 GL 593 (819)
Q Consensus 592 ~~ 593 (819)
|+
T Consensus 558 g~ 559 (697)
T PLN03081 558 GL 559 (697)
T ss_pred CC
Confidence 44
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-69 Score=621.02 Aligned_cols=528 Identities=17% Similarity=0.213 Sum_probs=470.1
Q ss_pred CCCChhhhhHHHHHHHcCCChhhHHHHHhccCCCCcc-----hHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccH
Q 039792 83 LQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLV-----SWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYIL 157 (819)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 157 (819)
-.++...|..+++.|++.|++++|+++|++|++++.+ .++.++.+|++.|..++|+.+|+.| . .||..+|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M-~----~pd~~Ty 440 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI-R----NPTLSTF 440 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc-C----CCCHHHH
Confidence 3467888999999999999999999999999886655 4556777899999999999999999 3 2999999
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCC----CCCeeeHHHHHHH
Q 039792 158 SSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLM----VKTAVSWTTIITG 233 (819)
Q Consensus 158 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~ 233 (819)
+.+|++|++.++++ .+.++++.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++|++||.+
T Consensus 441 n~LL~a~~k~g~~e----~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 441 NMLMSVCASSQDID----GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHhCcCHH----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999976 778899999999999999999999999999999999999999996 6899999999999
Q ss_pred HHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHH--hCCCCchhHHHHHHHHhHhCCChH
Q 039792 234 YVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLR--RGMGMDVSVINVLMDFYSKCGRVK 311 (819)
Q Consensus 234 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~ 311 (819)
|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|+.||..+|++||.+|+++|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999987 689999999999999999999999
Q ss_pred HHHHHHhcccC----CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHH
Q 039792 312 MARRLFDEIEV----KNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSF 387 (819)
Q Consensus 312 ~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 387 (819)
+|.++|++|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.|.
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999985 46689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 039792 388 KANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMA----DRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLT 463 (819)
Q Consensus 388 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 463 (819)
+.|+.||..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..|
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999995 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHH----hcCChHHHHHHHHhcCCCCeeehhhhHHHHHh
Q 039792 464 FVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYS----KCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQ 539 (819)
Q Consensus 464 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 539 (819)
|+.++.+|++.|+++.|.+++..|.+.|+.||..+|++++.+|. +++...++...|+.+...+...|
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w--------- 827 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW--------- 827 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch---------
Confidence 99999999999999999999999999999999999999997743 33333333333333322233333
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 039792 540 QLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYET 619 (819)
Q Consensus 540 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 619 (819)
.++|+.+|++|.+.|+.||..||+.+|.++.+.+..+.+..+++.+...+..|+..+|++||+
T Consensus 828 ---~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~-------------- 890 (1060)
T PLN03218 828 ---TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVD-------------- 890 (1060)
T ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHH--------------
Confidence 356999999999999999999999999777677777766666666655555555555555554
Q ss_pred HhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch
Q 039792 620 FGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI 664 (819)
Q Consensus 620 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (819)
++.+. .++|+.+|++|.+.|+.|+..
T Consensus 891 -----------------g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 891 -----------------GFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred -----------------hhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 44221 367999999999999999875
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=344.11 Aligned_cols=669 Identities=13% Similarity=0.029 Sum_probs=315.8
Q ss_pred CChhhHHHHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCC---CCcchHHHHHHHHHcCCChhhHHHHHH
Q 039792 66 KRITCYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSE---RNLVSWSSLVSMYTKKGYGEEALMVFI 142 (819)
Q Consensus 66 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 142 (819)
+++..+..++..+.... +.+...+..+...+...|++++|.+.|+.... .+..+|..++..+...|++++|...++
T Consensus 173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 251 (899)
T TIGR02917 173 NRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHAD 251 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67777777777766543 44566777777778888888888888877643 345567777777788888888888877
Q ss_pred HHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCC-cchhhHHHHHHHhcCChhHHHHHHhcCCC
Q 039792 143 GFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRD-VYVGTSLMNLYAKNGSVDDAKFVFDGLMV 221 (819)
Q Consensus 143 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~f~~~~~ 221 (819)
.+.....-.| .........+...|+.++|....+.. .+.+ |+ ...+..+...+.+.|++++|...|+.+..
T Consensus 252 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~----l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 323 (899)
T TIGR02917 252 ALLKKAPNSP--LAHYLKALVDFQKKNYEDARETLQDA----LKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILK 323 (899)
T ss_pred HHHHhCCCCc--hHHHHHHHHHHHhcCHHHHHHHHHHH----HHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7743322111 11111111222334444333222222 1111 11 11222223334444555555555444321
Q ss_pred ---CCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHH
Q 039792 222 ---KTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVIN 298 (819)
Q Consensus 222 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 298 (819)
.+...+..+...+.+.|++++|+..++.+.... +.+...+..+...+...|++++|.+.++.+.+... .+...+.
T Consensus 324 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 401 (899)
T TIGR02917 324 YAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAART 401 (899)
T ss_pred hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 122333444444444455555555544444332 12333444444444444555555544444443321 1233344
Q ss_pred HHHH----------------------------------HhHhCCChHHHHHHHhcccC---CCcccHHHHHHHHHcCCCh
Q 039792 299 VLMD----------------------------------FYSKCGRVKMARRLFDEIEV---KNIISWTTLIGGYMQNSFD 341 (819)
Q Consensus 299 ~li~----------------------------------~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 341 (819)
.+.. .|.+.|++++|..+++.+.. .+..+|+.+...+...|++
T Consensus 402 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 481 (899)
T TIGR02917 402 QLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDL 481 (899)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCH
Confidence 4444 44444555555444444431 1233444444455555555
Q ss_pred hHHHHHHHHHHHCCCCC-CcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHh
Q 039792 342 REAMKLFTEMTRSGWKP-DDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDV 420 (819)
Q Consensus 342 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (819)
++|.+.|+++.+. .| +...+..+...+...|+++.|.+.++.+.+... .+..++..+...|.+.|+.++|...|++
T Consensus 482 ~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 482 AKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred HHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555544432 22 222333334444444555555555554444321 1333444444455555555555555544
Q ss_pred cCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchh
Q 039792 421 MAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVF 497 (819)
Q Consensus 421 m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 497 (819)
+.. .+...+..++..|.+.|++++|+.+++++.+. .+.+..++..+...+...|+++.|...+..+.+... .+..
T Consensus 559 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 636 (899)
T TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSAL 636 (899)
T ss_pred HHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChH
Confidence 432 12334444445555555555555555554432 233344444445555555555555555555444332 1333
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASN 574 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 574 (819)
.+..+...|.+.|++++|...|+++.+ .+..+|..++..+...|++++|..+++.+.... +++...+..+...+..
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLR 715 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHH
Confidence 444445555555555555555554432 123344445555555555555555555554432 2333444444444555
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHH
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLF 651 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 651 (819)
.|++++|...+..+.+.++. ..++..++.+|.+.|++++|.+.++++. +.+...++.+...|...|+.++|.+.|
T Consensus 716 ~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAPS--SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 55555555555555444322 2334444555555555555555554433 233444455555555555555555555
Q ss_pred HHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccC
Q 039792 652 REMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISID 729 (819)
Q Consensus 652 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~ 729 (819)
+++.+ ..|+ ..++..+...+...|+ ++|+.+++++.. .+-.| ..+..+...+-+.+ +.+.|...++++++.+
T Consensus 794 ~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g-~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 794 RTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP--AILDTLGWLLVEKG-EADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc--HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence 55554 2332 2344455555555555 445555555544 11111 12222222222111 4455555555555555
Q ss_pred CCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 730 PMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 730 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
|.++.++..++.+|...|++++|.+++++|
T Consensus 868 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 868 PEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555555555555554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=339.71 Aligned_cols=679 Identities=11% Similarity=0.007 Sum_probs=492.4
Q ss_pred CChhhHHHHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCC---CCcchHHHHHHHHHcCCChhhHHHHHH
Q 039792 66 KRITCYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSE---RNLVSWSSLVSMYTKKGYGEEALMVFI 142 (819)
Q Consensus 66 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 142 (819)
+.+..+...+..+..... .+...+..+...+...|++++|.++++++.. ++...|..+...+...|++++|...|+
T Consensus 139 ~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 217 (899)
T TIGR02917 139 GQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217 (899)
T ss_pred CCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 788999999998876543 4566788899999999999999999998754 355688888999999999999999999
Q ss_pred HHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCC
Q 039792 143 GFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVK 222 (819)
Q Consensus 143 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~ 222 (819)
+.+... +.+..++..+...+...|+.++|......+ .+.. +.+..........+.+.|++++|...|+++...
T Consensus 218 ~a~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 290 (899)
T TIGR02917 218 KAIALR--PNNPAVLLALATILIEAGEFEEAEKHADAL----LKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKS 290 (899)
T ss_pred HHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 984432 345567777888888889887555444444 3332 233344444455667889999999999987443
Q ss_pred C---eeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHH
Q 039792 223 T---AVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINV 299 (819)
Q Consensus 223 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 299 (819)
+ ...+..+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|...+..+.+.. +.+...+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 368 (899)
T TIGR02917 291 APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSL 368 (899)
T ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 3 2344455667888999999999999998753 3355667778888999999999999999998765 346778899
Q ss_pred HHHHhHhCCChHHHHHHHhcccC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC---------------------
Q 039792 300 LMDFYSKCGRVKMARRLFDEIEV---KNIISWTTLIGGYMQNSFDREAMKLFTEMTRSG--------------------- 355 (819)
Q Consensus 300 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------- 355 (819)
+...|.+.|++++|.+.|+++.. .+...|..+...+...|++++|++.|+.+.+..
T Consensus 369 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHH
Confidence 99999999999999999998753 233445556666666666666666666655432
Q ss_pred ------------CCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC
Q 039792 356 ------------WKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD 423 (819)
Q Consensus 356 ------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (819)
.+++..++..+...+...|+++.|.+.+..+.+... .+...+..+...+...|++++|.+.|+++.+
T Consensus 449 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 527 (899)
T TIGR02917 449 KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527 (899)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122344455555555555666666666665554321 2333445555566666666666666665543
Q ss_pred ---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHH
Q 039792 424 ---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGS 500 (819)
Q Consensus 424 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 500 (819)
.+..++..+...+.+.|+.++|...|+++...+ +.+...+..+...+...|+.+.+..+++.+.+.. ..+...+.
T Consensus 528 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 528 IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 234556666666666667777777766665432 3344555666667777777777777777766543 33556677
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 039792 501 ALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGS 577 (819)
Q Consensus 501 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 577 (819)
.+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|...|+++.... +.+..++..+...+...|+
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 777777788888888887777653 245567777777777888888888888777642 3346677777777788888
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHH
Q 039792 578 LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMI 655 (819)
Q Consensus 578 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 655 (819)
++.|..+++.+.+.++. +...+..+...|.+.|++++|.+.|+.+. .|+..++..++..+...|+.++|.+.++++.
T Consensus 685 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL 763 (899)
T ss_pred HHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888887776643 66677778888888888888888888765 4555677778888888888888888888888
Q ss_pred HcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCch
Q 039792 656 IEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSG 734 (819)
Q Consensus 656 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~ 734 (819)
+ ..|+ ...+..+...|...|++++|.++|+++.+.. .++...+..+...+...+ + +.|...+++++++.|+++.
T Consensus 764 ~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~-~-~~A~~~~~~~~~~~~~~~~ 838 (899)
T TIGR02917 764 K--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELK-D-PRALEYAEKALKLAPNIPA 838 (899)
T ss_pred H--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC-c-HHHHHHHHHHHhhCCCCcH
Confidence 7 4554 4577778888888999999999999988732 235566777777776653 5 7799999999999999999
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 039792 735 SYTLLSNTFACNSMWADAKQVRKKMDLDGL 764 (819)
Q Consensus 735 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 764 (819)
.+..++.+|...|++++|.+.++++.+.+.
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999987653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-22 Score=241.41 Aligned_cols=636 Identities=11% Similarity=0.002 Sum_probs=407.0
Q ss_pred HHHHHHcCCChhhHHHHHhccCC--C-CcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCC
Q 039792 93 LLRNYSKANDLDGARKLFDTMSE--R-NLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGG 169 (819)
Q Consensus 93 ll~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 169 (819)
.++.+...++.+.|++.++++.. | |+..+..++..+.+.|+.++|...+++..+. .|+...+..+....
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~---~P~~~~~~~~~~~~----- 105 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL---APDSNAYRSSRTTM----- 105 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCChHHHHHHHHH-----
Confidence 44566777888888888887643 3 5567788888888999999999999887332 24332221111000
Q ss_pred CCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHH----HHHHHHhcCCchhHHH
Q 039792 170 GGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTT----IITGYVKSGRSDLSLN 245 (819)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~----li~~~~~~g~~~~A~~ 245 (819)
.. ..|+......+...+.+.|++++|...|+.+...+...... ........|+.++|++
T Consensus 106 ----------------~~-~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~ 168 (1157)
T PRK11447 106 ----------------LL-STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAIN 168 (1157)
T ss_pred ----------------Hh-cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHH
Confidence 00 12233333444555666677777777776654332221110 0111122466677777
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCC----------------Cc---hhHHHHHHHHhHh
Q 039792 246 LFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMG----------------MD---VSVINVLMDFYSK 306 (819)
Q Consensus 246 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----------------~~---~~~~~~li~~~~~ 306 (819)
.|+++.+.. +-+......+-..+...|+.++|.+.++.+.+.... ++ ...+...+..+-.
T Consensus 169 ~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~ 247 (1157)
T PRK11447 169 QLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSD 247 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCC
Confidence 777766542 123334455556666667777777766666543210 00 1111112222222
Q ss_pred CCChHHHHHHHhcccC--CCcc-cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHhcCCcchhhHHHH
Q 039792 307 CGRVKMARRLFDEIEV--KNII-SWTTLIGGYMQNSFDREAMKLFTEMTRSGWKP-DDFACSSVLTSCGSVEALEQGRQV 382 (819)
Q Consensus 307 ~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~ 382 (819)
....+.|...+..... .|.. ........+...|++++|+..|++..+. .| +...+..+...+.+.|+.++|...
T Consensus 248 ~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~ 325 (1157)
T PRK11447 248 GDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQ 325 (1157)
T ss_pred chHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2234445555544321 1111 1122344566778888888888887763 45 455666677777788888888888
Q ss_pred HHHHHHcCCCCCh-hHH------------hHHhhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHH
Q 039792 383 HAYSFKANIESDN-FVK------------NSLVDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEAL 446 (819)
Q Consensus 383 ~~~~~~~g~~~~~-~~~------------~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 446 (819)
++.+.+....... ..+ ..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|+
T Consensus 326 l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~ 405 (1157)
T PRK11447 326 FEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAE 405 (1157)
T ss_pred HHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8887765433211 111 1223456778888888888888764 24456777788888888888888
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCc--------cchhhHHHHHHHHHhcCChHHHHHH
Q 039792 447 DLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVF--------LDVFAGSALIDAYSKCFSNKDARLV 518 (819)
Q Consensus 447 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~--------~~~~~~~~li~~~~~~g~~~~A~~~ 518 (819)
+.|++..+.. +.+...+..+...+. .++.++|..+++.+...... .....+..+...+...|+.++|.+.
T Consensus 406 ~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~ 483 (1157)
T PRK11447 406 RYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAEL 483 (1157)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 8888887542 223344444555443 45667777776654322110 1122355677788899999999999
Q ss_pred HHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 039792 519 FDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDF 595 (819)
Q Consensus 519 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 595 (819)
|++..+ | +...+..+...|.+.|++++|...|++..+.. +.+...+..+...+...++.++|...++.+......+
T Consensus 484 ~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~ 562 (1157)
T PRK11447 484 QRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS 562 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh
Confidence 998865 3 34566778888999999999999999988642 2234444444445677889999999888764432222
Q ss_pred ch---------hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hh
Q 039792 596 DS---------FITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-IT 665 (819)
Q Consensus 596 ~~---------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 665 (819)
+. ..+..+.+.+...|+.++|.++++. .+.+...+..+...+.+.|++++|++.|++.++ ..|+. ..
T Consensus 563 ~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a 639 (1157)
T PRK11447 563 NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADA 639 (1157)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 21 1223456788999999999999984 344666778899999999999999999999998 67865 67
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCccCc-hHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCc------hhHHH
Q 039792 666 FVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGM-EHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDS------GSYTL 738 (819)
Q Consensus 666 ~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~------~~~~~ 738 (819)
+..+...+...|++++|.+.++...+ ..|+. ..+..+...+-+.+ +.+.|...++++++..|+++ ..+..
T Consensus 640 ~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~ 716 (1157)
T PRK11447 640 RLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALG-DTAAAQRTFNRLIPQAKSQPPSMESALVLRD 716 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHhhhCccCCcchhhHHHHHH
Confidence 88999999999999999999998775 23332 23333444443322 88999999999999887654 36667
Q ss_pred HHHHHHhCCCchHHHHHHHHHHh-CCCc
Q 039792 739 LSNTFACNSMWADAKQVRKKMDL-DGLM 765 (819)
Q Consensus 739 l~~~y~~~g~~~~a~~~~~~m~~-~g~~ 765 (819)
++.+|...|++++|.+.+++... .|+.
T Consensus 717 ~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 717 AARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 89999999999999999888753 3453
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-22 Score=238.02 Aligned_cols=609 Identities=13% Similarity=0.084 Sum_probs=393.8
Q ss_pred CChhhHHHHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCC--CCcch-H----------------HHHHH
Q 039792 66 KRITCYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSE--RNLVS-W----------------SSLVS 126 (819)
Q Consensus 66 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~--~~~~~-~----------------~~li~ 126 (819)
++.+.+++...++.... +.|+.++..+...+.+.|+.++|.+.+++..+ |+... + -.+..
T Consensus 42 ~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ 120 (1157)
T PRK11447 42 HREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQAR 120 (1157)
T ss_pred CChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHH
Confidence 77888888888776543 33677888899999999999999999999865 43322 1 22334
Q ss_pred HHHcCCChhhHHHHHHHHHHcCCCCCCcccHHH-HHHH-HhcCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHH
Q 039792 127 MYTKKGYGEEALMVFIGFLKVGNGRPDDYILSS-VICA-CTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYA 204 (819)
Q Consensus 127 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~-ll~~-~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~ 204 (819)
.+.+.|++++|+..|+..+.. .+|+. .+.. .... ....++.++|.+..++ +.+.. +.+...+..+...+.
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~--~p~~~-~la~~y~~~~~~~~g~~~~A~~~L~~----ll~~~-P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNG--APPEL-DLAVEYWRLVAKLPAQRPEAINQLQR----LNADY-PGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccC--CCCCh-HHHHHHHHHHhhCCccHHHHHHHHHH----HHHhC-CCCHHHHHHHHHHHH
Confidence 688999999999999998432 22332 2111 1222 2234555544333333 33332 445667888899999
Q ss_pred hcCChhHHHHHHhcCCCCCee------eH-----------------HHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhh
Q 039792 205 KNGSVDDAKFVFDGLMVKTAV------SW-----------------TTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYL 261 (819)
Q Consensus 205 ~~g~~~~A~~~f~~~~~~~~~------~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 261 (819)
+.|+.++|...|+++...... .| ...+..+-.....+.|...+.++......|+...
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 999999999999987432211 11 1111111111223344455544433322232211
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccC--CCc---ccHHHH-----
Q 039792 262 LSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV--KNI---ISWTTL----- 331 (819)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l----- 331 (819)
...-..+...|++++|...++..++... .+..++..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 273 -~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 273 -RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred -HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 1223445667888888888888887642 3667788888888888888888888887653 221 122222
Q ss_pred -------HHHHHcCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhh
Q 039792 332 -------IGGYMQNSFDREAMKLFTEMTRSGWKP-DDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVD 403 (819)
Q Consensus 332 -------i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 403 (819)
...+.+.|++++|++.|++..+. .| +...+..+-..+...|++++|.+.++.+.+.... +...+..+..
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~ 427 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 23466788888888888888874 44 3445556667778888888888888888875422 3445556666
Q ss_pred hhhcCCCHHHHHHHHHhcCCCC------------cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 039792 404 MYAKCDSLTEARKVFDVMADRN------------VVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLS 471 (819)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 471 (819)
.|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 664 456788888887765321 1234455667778888888888888877642 22345566677778
Q ss_pred hccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCC----e---------eehhhhHHHHH
Q 039792 472 SSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRD----I---------VVWNAMLLGYT 538 (819)
Q Consensus 472 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~ 538 (819)
...|+.++|...++.+.+.... +...+..+...+...++.++|...++.+.... . ..+..+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 8888888888888888765433 33333444455667788888888888775421 0 01123445677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 039792 539 QQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYE 618 (819)
Q Consensus 539 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 618 (819)
..|+.++|..+++. .+++...+..+...+.+.|++++|...++.+++..+. +...+..++..|...|+.++|.+
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 77888888887762 2445556666777777888888888888888877654 66777778888888888888888
Q ss_pred HHhcCC--C-CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-C----CchhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 619 TFGSTT--W-KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLE-P----NYITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 619 ~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
.++... . .+...+..+...+...|++++|.+++++++...-. | +...+..+...+...|++++|...|++..
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 887665 2 34556666777777888888888888887763211 1 11244555667777888888888888776
Q ss_pred h-cCCccC
Q 039792 691 G-FGIEPG 697 (819)
Q Consensus 691 ~-~g~~p~ 697 (819)
. .|+.|.
T Consensus 739 ~~~~~~~~ 746 (1157)
T PRK11447 739 VASGITPT 746 (1157)
T ss_pred hhcCCCCC
Confidence 5 555543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-19 Score=207.75 Aligned_cols=624 Identities=13% Similarity=0.038 Sum_probs=422.2
Q ss_pred HcCCChhhHHHHHhccCC--C-CcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCc
Q 039792 98 SKANDLDGARKLFDTMSE--R-NLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGG 174 (819)
Q Consensus 98 ~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 174 (819)
...|++++|...|+...+ | +..++..|...|.+.|+.++|+..+++.+.. .|+...|..++..+ ++..+|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l---dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR---HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHHHHh---ccChhHH
Confidence 345999999999998764 4 3567888999999999999999999987432 45555555555333 6666665
Q ss_pred hhHHHHHHHHHHhCCCCCcchhhHHHHH--------HHhcCChhHHHHHHhcCCCCC--eeeHH-HHHHHHHhcCCchhH
Q 039792 175 NVGEQMHSFVIKSGFDRDVYVGTSLMNL--------YAKNGSVDDAKFVFDGLMVKT--AVSWT-TIITGYVKSGRSDLS 243 (819)
Q Consensus 175 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~--------~~~~g~~~~A~~~f~~~~~~~--~~~~~-~li~~~~~~g~~~~A 243 (819)
...+++... .+.+..++..+... |.+.+...+++. .+...++ ..... .+...|.+.|++++|
T Consensus 129 ~~ye~l~~~-----~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 129 TTVEELLAQ-----QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred HHHHHHHHh-----CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 555555332 13345566666665 777766677776 3333333 33333 347889999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhhc-cCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccC
Q 039792 244 LNLFNQMRETDVVHDKYLLSSVLSACSM-LQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV 322 (819)
Q Consensus 244 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 322 (819)
++++.++.+.+... ..-...+-.++.. .++ +.+..++.. .+..++.++..+.+.|.+.|+.++|.+++++++.
T Consensus 202 i~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 202 DTLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 99999999886433 3335555556665 355 666666442 3446888899999999999999999999999873
Q ss_pred -----CCcccHHHHHHHHHcCCChh-HHHHHHHHHHHCCCCCCcc-hHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCCh
Q 039792 323 -----KNIISWTTLIGGYMQNSFDR-EAMKLFTEMTRSGWKPDDF-ACSSVLTSCGSVEALEQGRQVHAYSFKANIESDN 395 (819)
Q Consensus 323 -----~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 395 (819)
|+..+| +.-+.+.+... .|..-|.+ ...++.. ....++.-+.+.++++.++++.. +.|..
T Consensus 276 ~~~~~~~~~~~---~~~l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 342 (987)
T PRK09782 276 LFTTDAQEKSW---LYLLSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPAN 342 (987)
T ss_pred cccCCCccHHH---HHHHHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcc
Confidence 222333 33344444432 11111111 0111111 11223555667777776665522 34433
Q ss_pred hHHhHHhhh-hh-cCCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCChhHHHHHH
Q 039792 396 FVKNSLVDM-YA-KCDSLTEARKVFDVMADR---NVVSYNAMIEGYSKEEKLSEALDLFHEMRVG--FVPPGLLTFVSLL 468 (819)
Q Consensus 396 ~~~~~li~~-~~-~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll 468 (819)
.. ..+.. +. ..+...++...+..|-.. +.....-+.--..+.|+.++|..+|+..... ...++......++
T Consensus 343 ~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 343 EM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred hH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 32 22222 22 335666666666666543 3333333344456889999999999998652 2334445555888
Q ss_pred HHhhccCchH---hHHHH------------HHHHHH-----------hCC-cc--chhhHHHHHHHHHhcCChHHHHHHH
Q 039792 469 GLSSSVFSLE---SSKQI------------HGLIIK-----------YGV-FL--DVFAGSALIDAYSKCFSNKDARLVF 519 (819)
Q Consensus 469 ~~~~~~~~~~---~a~~i------------~~~~~~-----------~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~ 519 (819)
..+...+.+. .+..+ ...+.. .+. .+ +...+..+..++.. ++.++|...|
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 8898888744 44444 221111 111 12 45666777777776 7888899978
Q ss_pred HhcCCCCeeehhhhHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch
Q 039792 520 DEMNQRDIVVWNAMLLGY--TQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDS 597 (819)
Q Consensus 520 ~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 597 (819)
.+.....+..++.+..++ ...|++++|...|+++... +|+...+..+..++.+.|+.+.|...++..++..+. +.
T Consensus 500 ~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~ 576 (987)
T PRK09782 500 LQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DN 576 (987)
T ss_pred HHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cH
Confidence 776653333455554444 5899999999999997653 455566667777888999999999999999887643 33
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHH
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACS 674 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 674 (819)
..+..+.....+.|++++|...+++.. .|+...|..+...+.+.|+.++|+..|++..+ +.|+. ..+..+..++.
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 344444444556699999999999877 57788899999999999999999999999998 78976 46777777999
Q ss_pred ccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHH
Q 039792 675 HAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAK 753 (819)
Q Consensus 675 ~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 753 (819)
..|+.++|+..+++..+ ..|+ ...+..+..++.+.+ +.+.|+..++++++++|+++.+....+++.....+++.|.
T Consensus 655 ~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lG-d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 655 DSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLD-DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999987 2333 233444444444433 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 039792 754 QVRKKMDLDGL 764 (819)
Q Consensus 754 ~~~~~m~~~g~ 764 (819)
+-+++.-.-.+
T Consensus 732 ~~~~r~~~~~~ 742 (987)
T PRK09782 732 EEVGRRWTFSF 742 (987)
T ss_pred HHHHHHhhcCc
Confidence 98876654433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-18 Score=198.81 Aligned_cols=645 Identities=7% Similarity=-0.101 Sum_probs=431.9
Q ss_pred CChhhHHHHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCC--CCcchHHHHHHHHHcCCChhhHHHHHHH
Q 039792 66 KRITCYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSE--RNLVSWSSLVSMYTKKGYGEEALMVFIG 143 (819)
Q Consensus 66 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 143 (819)
++...+...+.+.++.... +..++..|...|.+.|+.++|+..+++..+ |+-..|..++..+ ++..+|..+|++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEE 133 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHH
Confidence 6778888888888776533 478889999999999999999999999865 4334444444333 888999999999
Q ss_pred HHHcCCCCCCcccHHHHH------HHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHH-HHHHHhcCChhHHHHHH
Q 039792 144 FLKVGNGRPDDYILSSVI------CACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSL-MNLYAKNGSVDDAKFVF 216 (819)
Q Consensus 144 m~~~~~~~p~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~g~~~~A~~~f 216 (819)
++....-.++.....+.+ -.+.+. + .+..... .......|+..+.... ...|.+.|++++|...+
T Consensus 134 l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---e----qAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 134 LLAQQKACDAVPTLRCRSEVGQNALRLAQL---P----VARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHhCCCChhHHHHHHHHhhccchhhhhhH---H----HHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 965543333333222222 113333 2 2222222 2222333445555555 88999999999999999
Q ss_pred hcCCCCCe---eeHHHHHHHHHhc-CCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCC-
Q 039792 217 DGLMVKTA---VSWTTIITGYVKS-GRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMG- 291 (819)
Q Consensus 217 ~~~~~~~~---~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~- 291 (819)
.++.+.++ .-+..|-..|.+. ++ +++..+++. .++-|......+...+...|+.+.|.+++..+...-..
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 98855433 3355666778873 66 777777553 34467788889999999999999999999886554322
Q ss_pred CchhHHHHHHHHhHhCCChH-HHHHHHhcccCCC-cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 039792 292 MDVSVINVLMDFYSKCGRVK-MARRLFDEIEVKN-IISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTS 369 (819)
Q Consensus 292 ~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 369 (819)
|....+ +-...+.+... .|..-|.+-..++ ....-.++..+.+++.++.+.++. .+.|.......-..+
T Consensus 281 ~~~~~~---~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~ 351 (987)
T PRK09782 281 AQEKSW---LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYAV 351 (987)
T ss_pred CccHHH---HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHhh
Confidence 333333 23345555543 1111111100111 112233477788899998666552 255544432111222
Q ss_pred hcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--CC----cchHHHHHHHHHhcCC--
Q 039792 370 CGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD--RN----VVSYNAMIEGYSKEEK-- 441 (819)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~-- 441 (819)
....+...++.+....+.+... -+....--+.-...+.|+.++|.++|+..-. ++ ...-+-++..|.+.+.
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 2334666667777777766522 1333334444455688999999999998765 22 2244577888999888
Q ss_pred -hhHHHHHHHHH------------HhCC-----------C-CC--ChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCcc
Q 039792 442 -LSEALDLFHEM------------RVGF-----------V-PP--GLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFL 494 (819)
Q Consensus 442 -~~~A~~~~~~m------------~~~g-----------~-~p--~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 494 (819)
..++..+-..+ .... . ++ +...+..+-.++.. ++.++|...+....... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence 56666663322 2210 1 12 33344444444444 78888888777776654 4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCC--CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQ--RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAA 572 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 572 (819)
+......+...+...|++++|...|+++.. ++...+..+...+.+.|++++|...|++..+.. +++...+..+....
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l 586 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQR 586 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 443333445555789999999999998764 444556777788899999999999999998754 23333344444455
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHH
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALL 649 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 649 (819)
...|++++|...++..++..+ +...+..+..++.+.|+.++|...|++.. +.+...++.+...+...|+.++|++
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 667999999999999998765 57788999999999999999999999877 4466788899999999999999999
Q ss_pred HHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCch-HHHHHHHHhhcccchhhhHHHHHHHHHc
Q 039792 650 LFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGME-HYASVVSLLGRNVWNVELGRYAAEMAIS 727 (819)
Q Consensus 650 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~-~y~~li~~l~r~~w~~~~a~~~~~~~~~ 727 (819)
.|++..+ ..|+. ..+..+..++...|++++|...+++..+ ..|+.. ..-..-..+.+. .+++.+....++...
T Consensus 665 ~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~-~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 665 MLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQR-FNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHH-HHHHHHHHHHHHHhh
Confidence 9999998 78875 5788999999999999999999999987 335431 111112222221 278899999999999
Q ss_pred cCCCCchhHHHHHHHHHhCCCc
Q 039792 728 IDPMDSGSYTLLSNTFACNSMW 749 (819)
Q Consensus 728 ~~p~~~~~~~~l~~~y~~~g~~ 749 (819)
+.|... +....+.++...+++
T Consensus 740 ~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 740 FSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred cCccch-hccccchHhhhcccc
Confidence 999765 555566666555554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-18 Score=172.12 Aligned_cols=445 Identities=15% Similarity=0.176 Sum_probs=308.8
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhC
Q 039792 228 TTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKC 307 (819)
Q Consensus 228 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 307 (819)
..|..-..+.|++++|.+.-...-..+ ..+..+...+-..+....+++...+--...++.. +.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 334455567788888877655443322 1111122222222333333332222111111111 11234455555555555
Q ss_pred CChHHHHHHHhcccC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHH
Q 039792 308 GRVKMARRLFDEIEV---KNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHA 384 (819)
Q Consensus 308 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 384 (819)
|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+....
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca--------------------- 186 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCA--------------------- 186 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhh---------------------
Confidence 555555555555442 1234555555555555555555555555544 23332221
Q ss_pred HHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--CC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 039792 385 YSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD--RN-VVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGL 461 (819)
Q Consensus 385 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 461 (819)
.+.+-...-..|++++|...+.+..+ |. .+.|+.|...+-.+|+...|+..|++..+- .|+
T Consensus 187 -------------~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~- 250 (966)
T KOG4626|consen 187 -------------RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN- 250 (966)
T ss_pred -------------hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCc-
Confidence 12233333445777777777766543 33 467888888888899999999888887642 332
Q ss_pred hHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHH
Q 039792 462 LTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYT 538 (819)
Q Consensus 462 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 538 (819)
-...|-.|...|...+.++.|...+.+... | ..+.+..|...|-
T Consensus 251 ---------------------------------f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 251 ---------------------------------FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY 297 (966)
T ss_pred ---------------------------------chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe
Confidence 122344566667777777777777776543 3 4567777888899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 039792 539 QQLENEEAIKLYLELLLSQQRPN-EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAY 617 (819)
Q Consensus 539 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 617 (819)
.+|..+-|+..|++..+ +.|+ ...|+.+..++...|++.+|...+.......+. .....+.|...|...|.+++|.
T Consensus 298 eqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred ccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHH
Confidence 99999999999999887 4665 467999999999999999999999999998765 6777888999999999999999
Q ss_pred HHHhcCC--CCC-hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 039792 618 ETFGSTT--WKD-VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFG 693 (819)
Q Consensus 618 ~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 693 (819)
.+|.... .|+ ....|.|...|.++|+.++|+..|++.+. ++|+- ..|+.+...|-..|+++.|.+.+.+.+.
T Consensus 375 ~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~-- 450 (966)
T KOG4626|consen 375 RLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ-- 450 (966)
T ss_pred HHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--
Confidence 9999876 333 45789999999999999999999999998 99986 6899999999999999999999988876
Q ss_pred CccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHH
Q 039792 694 IEPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQ 754 (819)
Q Consensus 694 ~~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 754 (819)
+.|. .+..+.+...+..++ |+..|...++.++++.|+.+.+|-.|+-.+---.+|.+-.+
T Consensus 451 ~nPt~AeAhsNLasi~kDsG-ni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~ 511 (966)
T KOG4626|consen 451 INPTFAEAHSNLASIYKDSG-NIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDK 511 (966)
T ss_pred cCcHHHHHHhhHHHHhhccC-CcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHH
Confidence 4565 456677778887766 99999999999999999999999999988888888887433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-17 Score=178.67 Aligned_cols=236 Identities=14% Similarity=0.108 Sum_probs=146.5
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHH
Q 039792 531 NAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFD----SFITSALIDM 606 (819)
Q Consensus 531 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~ 606 (819)
..+...|.+.|++++|..+|+++.+. .+++..++..+...+.+.|++++|.+.++.+.+.+..+. ...+..+...
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34444555555555555555555443 123344555555555555555555555555555443221 1123445556
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHccCCHHH
Q 039792 607 YAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHAGLIED 681 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 681 (819)
+.+.|++++|.+.|+++. +.+...+..+...|.+.|++++|+++|+++.+ ..|+. .++..+..+|...|++++
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE--QDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HChhhHHHHHHHHHHHHHHcCCHHH
Confidence 666677777777666654 22344566666777777777777777777776 34442 456667777777777777
Q ss_pred HHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHh---CCCchHHHHHHHH
Q 039792 682 GLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC---NSMWADAKQVRKK 758 (819)
Q Consensus 682 a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~~ 758 (819)
|...++++.+. .|+...+..++..+.+.+ +.+.|...++++++..|++.. +..+...+.. .|+.+++..++++
T Consensus 268 A~~~l~~~~~~--~p~~~~~~~la~~~~~~g-~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 268 GLEFLRRALEE--YPGADLLLALAQLLEEQE-GPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHh--CCCchHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHH
Confidence 77777777663 345455555666665543 667777777888888887764 4444444443 5699999999999
Q ss_pred HHhCCCcCCCceeEE
Q 039792 759 MDLDGLMKEAGRSWI 773 (819)
Q Consensus 759 m~~~g~~~~~g~s~i 773 (819)
|.+++++++|.+...
T Consensus 344 ~~~~~~~~~p~~~c~ 358 (389)
T PRK11788 344 LVGEQLKRKPRYRCR 358 (389)
T ss_pred HHHHHHhCCCCEECC
Confidence 999999999986543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=179.28 Aligned_cols=295 Identities=13% Similarity=0.086 Sum_probs=126.4
Q ss_pred cCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCC-C------cchHHHHHHHHHhcCChh
Q 039792 371 GSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADR-N------VVSYNAMIEGYSKEEKLS 443 (819)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~------~~~~~~li~~~~~~g~~~ 443 (819)
...|+++.|...+..+.+.+. .+..++..+...|.+.|++++|..+++.+... + ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 344555555555555555321 12334455555555555555555555554331 1 123444455555555555
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcC
Q 039792 444 EALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMN 523 (819)
Q Consensus 444 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 523 (819)
+|+.+|+++.+. .+++..++..+...+...|++++|...+..+.+.+..+.....
T Consensus 125 ~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------------ 179 (389)
T PRK11788 125 RAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI------------------------ 179 (389)
T ss_pred HHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH------------------------
Confidence 555555555432 1223334444444444444444444444444433222110000
Q ss_pred CCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 039792 524 QRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSAL 603 (819)
Q Consensus 524 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 603 (819)
...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.++.....+++.+
T Consensus 180 ---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 255 (389)
T PRK11788 180 ---AHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL 255 (389)
T ss_pred ---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence 0012223333444444444444444444321 112233333444444444444444444444443322222334444
Q ss_pred HHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc---cCC
Q 039792 604 IDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH---AGL 678 (819)
Q Consensus 604 i~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~g~ 678 (819)
+.+|.+.|++++|.+.++++. .|+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~ 333 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGR 333 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCcc
Confidence 444444444444444444433 23333334444444445555555555554444 34444444444443332 234
Q ss_pred HHHHHHHHHHHHhcCCccC
Q 039792 679 IEDGLDHFQSMAGFGIEPG 697 (819)
Q Consensus 679 ~~~a~~~~~~m~~~g~~p~ 697 (819)
.+++..++++|.+.++.|+
T Consensus 334 ~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 334 AKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred chhHHHHHHHHHHHHHhCC
Confidence 4445555554444333333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-16 Score=160.83 Aligned_cols=417 Identities=15% Similarity=0.112 Sum_probs=318.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHH-HhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCC
Q 039792 331 LIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLT-SCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCD 409 (819)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 409 (819)
|..-..+.|++++|.+.-...-++ .|+..--..++. .+....+++...+.-....+. ..--..+|+.+.+.+-..|
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence 444455667777776654443322 122111111222 233333333333222222222 1223567788888888899
Q ss_pred CHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH-hhccCchHhHHHHHH
Q 039792 410 SLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGL-SSSVFSLESSKQIHG 485 (819)
Q Consensus 410 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~i~~ 485 (819)
++++|..+++.+.+ ..+..|..+..++...|+.+.|...|.+-.+ +.|+.....+-+.. ....|.+++|..-+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999988875 3466888899999999999999998888764 46666655444433 344688888888888
Q ss_pred HHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCe---eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 039792 486 LIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDI---VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN- 561 (819)
Q Consensus 486 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 561 (819)
+.++.... -...|+.|...+-..|+...|+.-|++..+-|+ ..|-.|-..|...+.+++|+..|.+... ..|+
T Consensus 209 kAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~ 285 (966)
T KOG4626|consen 209 KAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNH 285 (966)
T ss_pred HHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcc
Confidence 77775543 345677888888999999999999999887443 4777788889999999999999988776 4565
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHH
Q 039792 562 EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTN 638 (819)
Q Consensus 562 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 638 (819)
.+.+..+...|...|.++.|...+++.++..+. -+..|+.|..++-..|++.+|...+.+.. ..-..+.+.|...|
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 466777777888999999999999999987654 46789999999999999999999999876 33466889999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchhh
Q 039792 639 AHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVE 716 (819)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~ 716 (819)
...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+..+++.+. +.|+ ...|+.|-..|...+ +++
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g-~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG-DVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh-hHH
Confidence 999999999999999998 88985 6799999999999999999999999876 6676 345666655554433 889
Q ss_pred hHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 717 LGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 717 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.|.+...+++.+.|.-+.++..|+.+|-.+|+..+|.+-++....
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-15 Score=172.81 Aligned_cols=248 Identities=12% Similarity=0.047 Sum_probs=199.8
Q ss_pred cCChHHHHHHHHhcCCC------CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHH
Q 039792 509 CFSNKDARLVFDEMNQR------DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN-EFTFAALITAASNLGSLKHG 581 (819)
Q Consensus 509 ~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 581 (819)
.+++++|.+.|+...+. ....|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 46788888888877642 2346777778888999999999999998874 454 55778888888899999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 039792 582 QQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEG 658 (819)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 658 (819)
...++.+++..+. +..++..+...|...|++++|...|++.. +.+...|..+...+.+.|++++|+..|++.++
T Consensus 385 ~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 385 EEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 9999999887654 67889999999999999999999999876 34567788899999999999999999999988
Q ss_pred CCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHH--HH----HHHhhcccchhhhHHHHHHHHHccCCC
Q 039792 659 LEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYA--SV----VSLLGRNVWNVELGRYAAEMAISIDPM 731 (819)
Q Consensus 659 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~--~l----i~~l~r~~w~~~~a~~~~~~~~~~~p~ 731 (819)
..|+. ..+..+..++...|++++|...|++.....-..+..+.+ .+ ...+...+ +.+.|...++++++++|+
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~-~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ-DFIEAENLCEKALIIDPE 540 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCCC
Confidence 67864 678888999999999999999999988732111111111 11 11111101 889999999999999999
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 732 DSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 732 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+...+..++.+|...|++++|.+.+++..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988754
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-15 Score=143.94 Aligned_cols=346 Identities=15% Similarity=0.163 Sum_probs=234.3
Q ss_pred CcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcchh
Q 039792 117 NLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVG 196 (819)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~ 196 (819)
.+++-|.|+.. ..+|...++.-+|+.| +..|+..+...-..++...+-.++.+--...-+ .+-.|.+.|- .+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m-~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~-~Fv~~~~~~E-~S~~sW 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERM-RSENVDVSEKVQLELFRLVTYYNSSNVPFAEWE-EFVGMRNFGE-DSTSSW 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHH-HhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHH-HHhhcccccc-cccccc
Confidence 34566777654 4678899999999999 888888777766666665444333221000111 1111223332 222233
Q ss_pred hHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChh
Q 039792 197 TSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVG 276 (819)
Q Consensus 197 ~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 276 (819)
|.|.+.+ -+| +...++..+|..||.|+|+--..+.|.++|.+-.....+.+..+||.+|.+-+- .
T Consensus 191 --------K~G~vAd--L~~-E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~ 255 (625)
T KOG4422|consen 191 --------KSGAVAD--LLF-ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----S 255 (625)
T ss_pred --------ccccHHH--HHH-hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----h
Confidence 4455544 444 445566789999999999999999999999999999899999999999987653 3
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 039792 277 GGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGW 356 (819)
Q Consensus 277 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 356 (819)
.++.+..+|+...+.||.+++|+++....+.|+++.|.+. |++++.+|++-|+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGV 308 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGV 308 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCC
Confidence 4488999999999999999999999999999998877643 4556666666666
Q ss_pred CCCcchHHHHHHHhcCCcchhh-HHHHHHHHHH----cCCCC----ChhHHhHHhhhhhcCCCHHHHHHHHHhcCC----
Q 039792 357 KPDDFACSSVLTSCGSVEALEQ-GRQVHAYSFK----ANIES----DNFVKNSLVDMYAKCDSLTEARKVFDVMAD---- 423 (819)
Q Consensus 357 ~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---- 423 (819)
.|...+|..+|..+++.++..+ +..++.++.. ..+.| |...+..-++.|.+..+.+-|.++-.-...
T Consensus 309 ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~ 388 (625)
T KOG4422|consen 309 EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW 388 (625)
T ss_pred CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch
Confidence 6666666666666665555432 3333333332 11221 334445555555566666666555444332
Q ss_pred ----C---CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccch
Q 039792 424 ----R---NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDV 496 (819)
Q Consensus 424 ----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 496 (819)
+ ...-|..+....|+....+.-+..|+.|.-.-+-|+..+...++++....+.++-..+++..++..|.....
T Consensus 389 ~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 389 KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 1 123356677777888888888999999988888889999999999999999999999999888888765554
Q ss_pred hhHHHHHHHHHh
Q 039792 497 FAGSALIDAYSK 508 (819)
Q Consensus 497 ~~~~~li~~~~~ 508 (819)
....-+...+++
T Consensus 469 ~l~eeil~~L~~ 480 (625)
T KOG4422|consen 469 DLREEILMLLAR 480 (625)
T ss_pred HHHHHHHHHHhc
Confidence 444444444444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-13 Score=145.38 Aligned_cols=673 Identities=12% Similarity=0.049 Sum_probs=400.1
Q ss_pred hHHHHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCC------CCcc-----hHHHHHHHHHcCCC-----
Q 039792 70 CYKQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSE------RNLV-----SWSSLVSMYTKKGY----- 133 (819)
Q Consensus 70 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~------~~~~-----~~~~li~~~~~~g~----- 133 (819)
.+.++..-+...+- ...+|..+...|.+.|..++.+.+++.-.. .|+. .++.+...|+..+.
T Consensus 26 D~~ev~~IL~~e~a--~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~ 103 (1018)
T KOG2002|consen 26 DATEVLSILKAEQA--PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKK 103 (1018)
T ss_pred ChHHHHHHHHHhcC--chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555555443 346788888999999999999999987651 2222 22333333322221
Q ss_pred ------hhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC
Q 039792 134 ------GEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNG 207 (819)
Q Consensus 134 ------~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 207 (819)
+..|..+|...-.-....+...++.... |-..+... .+.+.+-+..+.+.. ++|+-..-.=.......|
T Consensus 104 ~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~--~l~~~~~~--~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkk 178 (1018)
T KOG2002|consen 104 DEKDELFDKATLLFDLADKIDMYEDSHLLVQRGF--LLLEGDKS--MDDADAQFHFVLKQS-PDNILALLGKARIAYNKK 178 (1018)
T ss_pred chhHHHHHHHHHHhhHHHHhhccCcchhhhhhhh--hhhcCCcc--HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccc
Confidence 1233333333200000111111111111 11112211 112222222222221 222222111112233457
Q ss_pred ChhHHHHHHhcC--CCC----CeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHH----hhccCChhh
Q 039792 208 SVDDAKFVFDGL--MVK----TAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSA----CSMLQFVGG 277 (819)
Q Consensus 208 ~~~~A~~~f~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~----~~~~~~~~~ 277 (819)
++-.|+.+|... ..| |+. -.+--.+.+.|+.+.|+..|.+..+.+ |+.+.-...|.. +.....+..
T Consensus 179 dY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 179 DYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred cHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHH
Confidence 888888888874 222 222 112234567888899998888887643 322211111111 112233444
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCC----c--ccHHHHHHHHHcCCChhHHHHHHHHH
Q 039792 278 GKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKN----I--ISWTTLIGGYMQNSFDREAMKLFTEM 351 (819)
Q Consensus 278 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~~~~~li~~~~~~g~~~~A~~~~~~m 351 (819)
|.+++...-... ..++.+.+.|.+.|.-.|+++.+..+...+.... + .+|--+.++|-..|++++|...|.+-
T Consensus 255 ~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 255 GVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 555555444432 3467788888888888899998888887776433 1 24667788888899999999988776
Q ss_pred HHCCCCCCcchH--HHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCC----CHHHHHHHHHhcCCC-
Q 039792 352 TRSGWKPDDFAC--SSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCD----SLTEARKVFDVMADR- 424 (819)
Q Consensus 352 ~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~- 424 (819)
.+ ..||.+++ .-+.+.+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..+..+..++
T Consensus 334 ~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 334 LK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred Hc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 65 45655444 345566788888999988888887753 223445556666666654 456777777766653
Q ss_pred --CcchHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHh---CCccc
Q 039792 425 --NVVSYNAMIEGYSKEEKLSEALDLFHEM----RVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY---GVFLD 495 (819)
Q Consensus 425 --~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~---g~~~~ 495 (819)
|...|-.+...+.+.. ...++..|... ...+-.+.....+.+-......|+++.|...+...... ...+|
T Consensus 411 ~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 4556666666555443 33336665543 34455566777888888888888888888888877654 12222
Q ss_pred h------hhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhc-------CCHHHHHHHHHHHHHCCCCCCH
Q 039792 496 V------FAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQ-------LENEEAIKLYLELLLSQQRPNE 562 (819)
Q Consensus 496 ~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-------g~~~~A~~~~~~m~~~g~~p~~ 562 (819)
. .+--.+...+-..++.+.|.+.|..+.+..+. .|++|.+. +...+|...+++.... ..-++
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~----YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np 564 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG----YIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNP 564 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch----hHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCc
Confidence 2 12222445555667788888888887753322 23333333 5667788877776643 12233
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHh------------cCCHHHHHHHHhcCC---CC
Q 039792 563 FTFAALITAASNLGSLKHGQQFHNHLIKLGL-DFDSFITSALIDMYAK------------CGSLEDAYETFGSTT---WK 626 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~---~~ 626 (819)
..++.+-..+.+...+..|..-+..+.+.-. .+|+...-+|.+.|.. .+..++|.++|.++. ++
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk 644 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK 644 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3333344455556666666665555544222 2466666667665542 245677888888666 45
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVV 705 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li 705 (819)
|...=|-+.-.++..|++.+|..+|.+..+... -+..+|..+..+|...|++..|++.|+...+ +.-.-+.+...+|.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 666777788888888999999999999887543 2445788888889999999999999988877 55444555555555
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHh-------------------CCCchHHHHHHHHHHhCCCc
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC-------------------NSMWADAKQVRKKMDLDGLM 765 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~-------------------~g~~~~a~~~~~~m~~~g~~ 765 (819)
.++-+++ .+..+...+.++..+.|.|+..-..++-+..+ .+..++|.++|+.|...+-+
T Consensus 724 ra~y~~~-~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 724 RAWYEAG-KLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHhh-hHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4443332 67778888888888888888877776655432 35566788888888766543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-13 Score=147.18 Aligned_cols=540 Identities=14% Similarity=0.051 Sum_probs=372.3
Q ss_pred hhHHHHHHhcCCCCCeeeH-HHHHHHH--HhcCCchhHHHHHHHHHHC--CCCCChhhHHHHHHHhhccCChhhHHHHHH
Q 039792 209 VDDAKFVFDGLMVKTAVSW-TTIITGY--VKSGRSDLSLNLFNQMRET--DVVHDKYLLSSVLSACSMLQFVGGGKQIHA 283 (819)
Q Consensus 209 ~~~A~~~f~~~~~~~~~~~-~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 283 (819)
++.|...|......+..-- -.+..++ ...|++..|+.+|...... ...||.. ..+-.++.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 5788888887644332211 2233333 3468999999999996543 2344432 223355578899999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHhHhC---CChHHHHHHHhccc---CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCC-
Q 039792 284 HVLRRGMGMDVSVINVLMDFYSKC---GRVKMARRLFDEIE---VKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGW- 356 (819)
Q Consensus 284 ~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 356 (819)
..++... .++.++-.|--+-... ..+..+..++...- ..|.+..+.|...|.-.|++..++.+...+.....
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8887653 2333333332222222 23455555555443 45778899999999999999999999999887531
Q ss_pred C-CCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--C-CcchHHHH
Q 039792 357 K-PDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD--R-NVVSYNAM 432 (819)
Q Consensus 357 ~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~l 432 (819)
. .-...|-.+-+++-..|+++.|...|-+..+..-......+-.|..+|.+.|+++.+...|+.+.+ | +..+...|
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 1 123457778888999999999999998877654333233445788999999999999999999875 3 34455566
Q ss_pred HHHHHhcC----ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHH----HHhCCccchhhHHHHHH
Q 039792 433 IEGYSKEE----KLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLI----IKYGVFLDVFAGSALID 504 (819)
Q Consensus 433 i~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~----~~~g~~~~~~~~~~li~ 504 (819)
...|...+ ..++|..++.+..+.- +.|...|..+-..+.... .......+..+ ...+-.+.+.+.|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 66666654 4567777777765542 455666666666555443 33335555444 45666688999999999
Q ss_pred HHHhcCChHHHHHHHHhcCC-------CCee------ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 039792 505 AYSKCFSNKDARLVFDEMNQ-------RDIV------VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFT-FAALIT 570 (819)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~ 570 (819)
.+...|.++.|...|+.... +|.. +--.+...+-..++++.|.+.|...... .|+-+. |.-+.-
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 99999999999999987653 2221 1122445566678999999999999875 566544 333332
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChHhHHHHHHHHHh-----
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-----WKDVACWNSMICTNAH----- 640 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~----- 640 (819)
.....+...+|...+..+....- .++..++.+.+.|.+...+..|.+-|+.+. .+|..+.-+|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 23345688889999888887543 367777878889999999988888555433 3466666556654432
Q ss_pred -------CCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHhcCC-ccCchHHHHHHHHhhcc
Q 039792 641 -------HGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAGFGI-EPGMEHYASVVSLLGRN 711 (819)
Q Consensus 641 -------~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p~~~~y~~li~~l~r~ 711 (819)
.+..++|+++|.+.++ ..| |...=+.+.-.++..|++.+|..+|.+..+... -++ +|-.+...|--+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d--v~lNlah~~~e~ 693 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED--VWLNLAHCYVEQ 693 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc--eeeeHHHHHHHH
Confidence 3457889999999988 677 567788888999999999999999999998332 222 222233333222
Q ss_pred cchhhhHHHHHHHHHccC--CCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 712 VWNVELGRYAAEMAISID--PMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 712 ~w~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+ +...|.++++..+... .+++.+...|+.+|.+.|+|.+|.+.....+.
T Consensus 694 ~-qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 694 G-QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred H-HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1 6677888888887763 35678999999999999999999999877654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-15 Score=167.60 Aligned_cols=284 Identities=11% Similarity=-0.005 Sum_probs=139.8
Q ss_pred hhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchH
Q 039792 402 VDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLE 478 (819)
Q Consensus 402 i~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 478 (819)
+..+.+.|+.++|..+++.... .+...+..++.+....|++++|+..|+++... -+.+...+..+...+...|+.+
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~-~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV-NVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHH
Confidence 3344455566666555555432 12333444444555556666666666665443 1222333444444555555555
Q ss_pred hHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC--CCe-eehhhhHHHHHhcCCHHHHHHHHHHHHH
Q 039792 479 SSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--RDI-VVWNAMLLGYTQQLENEEAIKLYLELLL 555 (819)
Q Consensus 479 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 555 (819)
.|...+..+.+.... +...+..+...+...|+.++|...++.+.. |+. ..+.. +..+...|++++|...++.+..
T Consensus 128 ~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 128 TVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CLSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555544222 334444555555555555555555554422 221 12211 1234555555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH----HHHHHhcCC---CCCh
Q 039792 556 SQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLED----AYETFGSTT---WKDV 628 (819)
Q Consensus 556 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~---~~~~ 628 (819)
....++...+..+..++...|++++|...++.+.+..+. +...+..+...|...|++++ |...|++.. +.+.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~ 284 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV 284 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH
Confidence 322223333333344455555555555555555554433 44455555555555555553 455555443 2234
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..+..+...+...|++++|+..+++..+ ..|+. ..+..+..++...|++++|...++.+..
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555555555555555555555555555 44543 2344444555555555555555555554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-14 Score=164.42 Aligned_cols=418 Identities=12% Similarity=-0.024 Sum_probs=226.0
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHh
Q 039792 227 WTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSK 306 (819)
Q Consensus 227 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 306 (819)
+......+.+.|++++|++.|++... +.|+...|..+-.++...|+++.|...+...++... .+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 44556677788888888888888765 456667777777777777888888877777776532 245566667777777
Q ss_pred CCChHHHHHHHhcccCCCcc---cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-cchHHHHHHHhcCCcchhhHHHH
Q 039792 307 CGRVKMARRLFDEIEVKNII---SWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPD-DFACSSVLTSCGSVEALEQGRQV 382 (819)
Q Consensus 307 ~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~ 382 (819)
.|++++|...|......+.. ....++.-+.. ..+........+. .|. ...+.. +..+...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET--KPENLPSVTF-VGNYLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc--CCCCCCCHHH-HHHHHHHccCCcchhh
Confidence 88888777766544321111 11111111111 1122222222221 111 111111 1111000000000000
Q ss_pred HHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHH---HHhcCChhHHHHHHHHHHhCC-CC
Q 039792 383 HAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEG---YSKEEKLSEALDLFHEMRVGF-VP 458 (819)
Q Consensus 383 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~ 458 (819)
+... ...+... ...+..+... ....+++++|++.|++..+.+ ..
T Consensus 280 ~~~~----~~~~~~~----------------------------~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~ 327 (615)
T TIGR00990 280 LEDS----NELDEET----------------------------GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG 327 (615)
T ss_pred hhcc----ccccccc----------------------------ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC
Confidence 0000 0000000 0000000000 012345555555555555432 12
Q ss_pred CC-hhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhH
Q 039792 459 PG-LLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAML 534 (819)
Q Consensus 459 p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 534 (819)
|+ ...+..+-..+...|+++.|...++..++.... ....|..+...+...|++++|...|+...+ .+...|..+.
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 22 223333333444455555555555554443211 233455556666666777777776665543 2345666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 039792 535 LGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLE 614 (819)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 614 (819)
..+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++..++..+. +...++.+...|...|+++
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHH
Confidence 77777777777777777776642 224455666666777777788888777777765433 5667777777777888888
Q ss_pred HHHHHHhcCC--CCC-hH-------hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHH
Q 039792 615 DAYETFGSTT--WKD-VA-------CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGL 683 (819)
Q Consensus 615 ~A~~~~~~~~--~~~-~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 683 (819)
+|.+.|++.. .|+ .. .++..+..+...|++++|.+++++..+ +.|+. ..+..+...+...|++++|+
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 8887777644 221 11 122222333446788888888888776 56654 45777777888888888888
Q ss_pred HHHHHHHh
Q 039792 684 DHFQSMAG 691 (819)
Q Consensus 684 ~~~~~m~~ 691 (819)
++|++..+
T Consensus 563 ~~~e~A~~ 570 (615)
T TIGR00990 563 KLFERAAE 570 (615)
T ss_pred HHHHHHHH
Confidence 88877765
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-14 Score=165.20 Aligned_cols=390 Identities=10% Similarity=-0.018 Sum_probs=227.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCC
Q 039792 331 LIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDS 410 (819)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 410 (819)
.+......|+.++|++++.+.... -..+...+..+...+...|++++|..+++..++.. +.+......+...+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 344455566666666666665541 11122234444444555555555555555544431 1122233344444444455
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHh
Q 039792 411 LTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY 490 (819)
Q Consensus 411 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 490 (819)
.++|. ..+++..+. .+.+.. +..+..++...|+.+.|...++.+.+.
T Consensus 99 ~~eA~-------------------------------~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 99 YDEAL-------------------------------VKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR 145 (765)
T ss_pred HHHHH-------------------------------HHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55544 444444432 111222 333344444444444444444444444
Q ss_pred CCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC-CCe------eehhhhHHHH-----HhcCCH---HHHHHHHHHHHH
Q 039792 491 GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ-RDI------VVWNAMLLGY-----TQQLEN---EEAIKLYLELLL 555 (819)
Q Consensus 491 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~ 555 (819)
... +...+..+...+.+.+..+.|.+.++.... |+. .....++..+ ...+++ ++|++.++.+..
T Consensus 146 ~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 146 APQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred CCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 333 233333455556666666666666665554 110 0111111111 112233 678888888875
Q ss_pred C-CCCCCHH-HHH----HHHHHHhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C
Q 039792 556 S-QQRPNEF-TFA----ALITAASNLGSLKHGQQFHNHLIKLGLD-FDSFITSALIDMYAKCGSLEDAYETFGSTTW--K 626 (819)
Q Consensus 556 ~-g~~p~~~-t~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~ 626 (819)
. ...|+.. .+. ..+.++...|++++|...++.+.+.+.. |+- ....+...|...|++++|...|+++.. |
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 3 2223221 111 1133455668888999988888877642 222 222357788888999999998887652 2
Q ss_pred C-----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-------------Cc---hhHHHHHHHHHccCCHHHHHHH
Q 039792 627 D-----VACWNSMICTNAHHGEPMKALLLFREMIIEGLEP-------------NY---ITFVGVLSACSHAGLIEDGLDH 685 (819)
Q Consensus 627 ~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------------~~---~t~~~ll~a~~~~g~~~~a~~~ 685 (819)
. ...+..+..++...|++++|.++++++.+. .| +. ..+..+...+...|++++|+++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 234556677788889999999999988873 33 32 1345566678888999999999
Q ss_pred HHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 686 FQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 686 ~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
++++.. ..-. ...+..+..++.+.+ +.+.|+..++++++++|++...+..++..+...|+|++|.++++++.+.
T Consensus 382 l~~al~~~P~n--~~l~~~lA~l~~~~g-~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 382 ARELAYNAPGN--QGLRIDYASVLQARG-WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhCCCC--HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999877 3222 334555555554333 6889999999999999999999999999999999999999999888753
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-14 Score=162.22 Aligned_cols=328 Identities=10% Similarity=0.006 Sum_probs=228.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhc
Q 039792 328 WTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAK 407 (819)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 407 (819)
...++..+.+.|++++|+.+++........+ ...+..+..++...|+++.|...++.+.+... .+...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 4455666777777777777777776642222 22333344445567777777777777776532 234556667777778
Q ss_pred CCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHH
Q 039792 408 CDSLTEARKVFDVMAD--R-NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIH 484 (819)
Q Consensus 408 ~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 484 (819)
.|++++|...|++... | +...|..+...+...|++++|...++++......+.. .+.. +..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~-~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIAT-CLSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHcCCHHHHHHHH
Confidence 8888888888877654 3 4556777778888888888888888877554322222 2222 23466778888888887
Q ss_pred HHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHH----HHHHHHHHHHCC
Q 039792 485 GLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEE----AIKLYLELLLSQ 557 (819)
Q Consensus 485 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g 557 (819)
..+.+....++......+...+.+.|+.++|...|+...+ .+...+..+...|...|++++ |+..|++.....
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 7776654444444455566777888888888888887764 244566777788888888875 788888887642
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHh-HHHH
Q 039792 558 QRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVAC-WNSM 634 (819)
Q Consensus 558 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~l 634 (819)
+.+...+..+...+...|++++|...++.+.+..+. +...+..+...|.+.|++++|.+.|+++. .|+... +..+
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 335567778888888889999999999888887654 56677778888889999999999888776 444433 3445
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCc
Q 039792 635 ICTNAHHGEPMKALLLFREMIIEGLEPNY 663 (819)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (819)
...+...|+.++|++.|++..+ ..|+.
T Consensus 359 a~al~~~G~~deA~~~l~~al~--~~P~~ 385 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQ--ARASH 385 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hChhh
Confidence 6678888999999999999887 56654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-13 Score=158.73 Aligned_cols=404 Identities=11% Similarity=-0.026 Sum_probs=192.6
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhccc---CCCcccHHHHHHHHHcCCCh
Q 039792 265 VLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIE---VKNIISWTTLIGGYMQNSFD 341 (819)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 341 (819)
.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++.. ..+...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 3334444444444444444443311 2233334455555555555555555555532 12233344444555555555
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhc
Q 039792 342 REAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVM 421 (819)
Q Consensus 342 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (819)
++|+..+++..+. .|+...+..+...+...|+.+.|...++.+.+.... +...+..+...+.+.+..++|...++..
T Consensus 100 ~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 5555555555442 232221333444444555555555555555543222 2233334455555556666666666555
Q ss_pred CC-CCc------chHHHHHHHHH-----hcCCh---hHHHHHHHHHHhC-CCCCChh-HHH----HHHHHhhccCchHhH
Q 039792 422 AD-RNV------VSYNAMIEGYS-----KEEKL---SEALDLFHEMRVG-FVPPGLL-TFV----SLLGLSSSVFSLESS 480 (819)
Q Consensus 422 ~~-~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~~~~~~a 480 (819)
.. |+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...++.++|
T Consensus 177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 43 110 01111111111 11122 4555555555432 1112111 110 001122233444444
Q ss_pred HHHHHHHHHhCCc-cchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039792 481 KQIHGLIIKYGVF-LDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQR 559 (819)
Q Consensus 481 ~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 559 (819)
...++.+.+.+.. |+. .... +...|...|++++|+..|+++......
T Consensus 257 ~~~~~~ll~~~~~~P~~-a~~~-------------------------------la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPW-AQRW-------------------------------VASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred HHHHHHhhccCCCCCHH-HHHH-------------------------------HHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 4444444333211 111 1111 233444555555555555554432100
Q ss_pred C---CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----------CCc---hhHHHHHHHHHHhcCCHHHHHHHHhc
Q 039792 560 P---NEFTFAALITAASNLGSLKHGQQFHNHLIKLGL-----------DFD---SFITSALIDMYAKCGSLEDAYETFGS 622 (819)
Q Consensus 560 p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~ 622 (819)
. .......+..++...|++++|..+++.+.+..+ .|+ ...+..+...+...|++++|++++++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 012233333444555555555555555544321 122 22445566677777777777777776
Q ss_pred CC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccC
Q 039792 623 TT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPG 697 (819)
Q Consensus 623 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~ 697 (819)
+. +.+...+..+...+...|++++|++.+++.++ +.|+.. .+......+...|++++|..+++.+++ ..-.|.
T Consensus 385 al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 385 LAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 55 33556777777777777888888888887777 667653 455555567777788888888888777 555555
Q ss_pred chHHHHHHH
Q 039792 698 MEHYASVVS 706 (819)
Q Consensus 698 ~~~y~~li~ 706 (819)
+..+.-..+
T Consensus 463 ~~~~~~~~~ 471 (765)
T PRK10049 463 VQRLARARD 471 (765)
T ss_pred HHHHHHHHH
Confidence 544444443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-13 Score=146.07 Aligned_cols=642 Identities=14% Similarity=0.038 Sum_probs=339.7
Q ss_pred HHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCCC----CcchHHHHHHHHHcCCChhhHHHHHHHHHHcC
Q 039792 73 QVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSER----NLVSWSSLVSMYTKKGYGEEALMVFIGFLKVG 148 (819)
Q Consensus 73 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 148 (819)
..+..+...|+.|+..+|.+|+.-||..|+++.|- +|.-|.-+ +-..++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45566677899999999999999999999999888 77766421 1223444444444444332221
Q ss_pred CCCCCcccHHHHHHHHhcCCCCCCCchhHH----------------------------------------------HHHH
Q 039792 149 NGRPDDYILSSVICACTQLGGGGDGGNVGE----------------------------------------------QMHS 182 (819)
Q Consensus 149 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~----------------------------------------------~~~~ 182 (819)
.|...||..++++|+..|++.. .+.++ .+.+
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 3344444444444444444331 12222 2222
Q ss_pred HHHHhCC-CCCcchhhHHHHHHHhcC--ChhHHHHHHh---cCC-CCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCC
Q 039792 183 FVIKSGF-DRDVYVGTSLMNLYAKNG--SVDDAKFVFD---GLM-VKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDV 255 (819)
Q Consensus 183 ~~~~~g~-~~~~~~~~~ll~~~~~~g--~~~~A~~~f~---~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 255 (819)
..++.+. .|...-++...- +.+.. .....+++.+ ... .++..+|..++..-.-+|+.+.|..++.+|++.|.
T Consensus 157 qllkll~~~Pvsa~~~p~~v-fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQV-FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHHHhhCCcccccchHHH-HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 2223221 111000000000 11110 1111111111 111 35777788888888888888888888888888888
Q ss_pred CCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHH
Q 039792 256 VHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGY 335 (819)
Q Consensus 256 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 335 (819)
+.+.+-|-.||-+ .++...+..++.-|...|+.|+..|+...+-...+.|....+... .+....+++-+..-
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsa 307 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSA 307 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHH
Confidence 8888877777766 677777788888888888888888888777766665553322211 12222222222222
Q ss_pred HcCCChhHHHHH------------HHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCC---ChhHHhH
Q 039792 336 MQNSFDREAMKL------------FTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIES---DNFVKNS 400 (819)
Q Consensus 336 ~~~g~~~~A~~~------------~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~ 400 (819)
.-+| ..|.+. +.+..-.|+......| ++..-....|.-+...++-+.+..-.... ++..+..
T Consensus 308 a~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~ 384 (1088)
T KOG4318|consen 308 ACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGA 384 (1088)
T ss_pred Hhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHH
Confidence 2223 112221 2222222332222222 12111222444444444444443211111 1112222
Q ss_pred HhhhhhcCCCHHHHHHHHHhcCCCCcch-HHHHHHHHHh---cC------------ChhHHHHHHHHHHhC----CCC--
Q 039792 401 LVDMYAKCDSLTEARKVFDVMADRNVVS-YNAMIEGYSK---EE------------KLSEALDLFHEMRVG----FVP-- 458 (819)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~li~~~~~---~g------------~~~~A~~~~~~m~~~----g~~-- 458 (819)
+ +...|.+...+.... ++ .-.+... .. +...+++-+..+... -..
T Consensus 385 ~------------lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~ 451 (1088)
T KOG4318|consen 385 L------------LRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPW 451 (1088)
T ss_pred H------------HHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccc
Confidence 2 334444443322111 11 1111111 11 111222222211100 001
Q ss_pred -----CChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCC------e
Q 039792 459 -----PGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRD------I 527 (819)
Q Consensus 459 -----p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~ 527 (819)
+=...-..++..|++..+..++...-+.....-+ ...|..||+.++...+.+.|..+.++...++ .
T Consensus 452 ~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~ 528 (1088)
T KOG4318|consen 452 PLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDL 528 (1088)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhccc
Confidence 1112234455555555555555544444333222 2568889999999999999999999888654 3
Q ss_pred eehhhhHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 039792 528 VVWNAMLLGYTQQLENEEAIKLYLELLLSQQ-RP-NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALID 605 (819)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 605 (819)
.-+..+.+.+.+.+....+..++++|.+.-. .| ...++--+++.....|..+...++++-+...|+.-+ .-++.
T Consensus 529 ~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~ 604 (1088)
T KOG4318|consen 529 PLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWM 604 (1088)
T ss_pred HhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceE
Confidence 4567778888888999999999998886422 22 245566777788888898888888888877766532 22334
Q ss_pred HHHhcCCHHHHHHHHhcCC------CCChHhHHHH------------------HHHHHhCCChHHHHHHHHHH-------
Q 039792 606 MYAKCGSLEDAYETFGSTT------WKDVACWNSM------------------ICTNAHHGEPMKALLLFREM------- 654 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l------------------i~~~~~~g~~~~A~~~~~~m------- 654 (819)
...+.++...|.++++... +.+...|..+ |.-|.+.|++.+|-++.+.=
T Consensus 605 vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~ 684 (1088)
T KOG4318|consen 605 VHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNG 684 (1088)
T ss_pred EEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCC
Confidence 4455666666666554322 1111122111 11244444444443332210
Q ss_pred ----HHcC-CCC---------CchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccc--hhhhH
Q 039792 655 ----IIEG-LEP---------NYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW--NVELG 718 (819)
Q Consensus 655 ----~~~g-~~p---------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w--~~~~a 718 (819)
...| +.| +..-..-|+..|.+.|+++.|..+|.+|. +.|+......|.+.+.+..- |+...
T Consensus 685 RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~ 761 (1088)
T KOG4318|consen 685 RDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEI 761 (1088)
T ss_pred CccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhH
Confidence 0000 011 00112337788999999999999999987 77887777777777776522 66666
Q ss_pred HHHHHHHHccCCCCc---hhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 719 RYAAEMAISIDPMDS---GSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 719 ~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
....+++-++.|..+ ..|.-.+-+..+-.+-+.|.+.+.+..+..
T Consensus 762 q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 762 QAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred HHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHcc
Confidence 667777777766544 334444444444444457888888888773
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-13 Score=131.10 Aligned_cols=429 Identities=16% Similarity=0.129 Sum_probs=255.8
Q ss_pred CeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhh--ccCChhhHH-HHHHHHHHhCCCCchhHHHH
Q 039792 223 TAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACS--MLQFVGGGK-QIHAHVLRRGMGMDVSVINV 299 (819)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~ 299 (819)
.+++=|.|+. ....|...++.-+|+.|+..|+..+...-..|+..-+ ...+..-++ +.|-.|.+.|-.. ..+
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~s--- 189 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSS--- 189 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-ccc---
Confidence 3456666665 4567899999999999999998888776666655433 223332221 2222333333221 111
Q ss_pred HHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhH
Q 039792 300 LMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQG 379 (819)
Q Consensus 300 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 379 (819)
-|.|++.+ ++-+...+...++.+||.|.|+--..+.|.++|++-.....+.+..+||.+|.+.+ +..+
T Consensus 190 -----WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~ 257 (625)
T KOG4422|consen 190 -----WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVG 257 (625)
T ss_pred -----cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhcc
Confidence 13455544 55555556678999999999999999999999999998888999999999998753 3344
Q ss_pred HHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHH----hcC----CCCcchHHHHHHHHHhcCChhH-HHHHHH
Q 039792 380 RQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFD----VMA----DRNVVSYNAMIEGYSKEEKLSE-ALDLFH 450 (819)
Q Consensus 380 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~ 450 (819)
+++..+|....+.||..++|+++.+..+.|+++.|++.+- +|. +|...+|..+|..+++.++..+ |..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 8899999999999999999999999999998887765432 222 2444455555555555444422 223333
Q ss_pred HHHh----CCCC---C-ChhHHHHHHHHhhccCchHhHHHHHHHHHHhC---CccchhhHHHHHHHHHhcCChHHHHHHH
Q 039792 451 EMRV----GFVP---P-GLLTFVSLLGLSSSVFSLESSKQIHGLIIKYG---VFLDVFAGSALIDAYSKCFSNKDARLVF 519 (819)
Q Consensus 451 ~m~~----~g~~---p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 519 (819)
++.. ...+ | |...|...+..|.+..+.+.|.++++.+.... +.++..
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~---------------------- 395 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ---------------------- 395 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH----------------------
Confidence 3221 1111 1 22234444445555555555544444333210 000000
Q ss_pred HhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH
Q 039792 520 DEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFI 599 (819)
Q Consensus 520 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 599 (819)
....-|..+....++....+.-+..|+.|.-.-+-|+..+...++++....+.++-..+++..++..|.......
T Consensus 396 -----~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 396 -----HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 011234455666777777888888888888777788888888899988888899888888888888776544444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhC-CChHHHH-HHHHHHHHcCCCCCchhHHHHHHHHHccC
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHH-GEPMKAL-LLFREMIIEGLEPNYITFVGVLSACSHAG 677 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 677 (819)
..-+...+++.. ..|+...-..+-...++. -++.++. ..-.+|.+..+ .....+.++-.+.+.|
T Consensus 471 ~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G 536 (625)
T KOG4422|consen 471 REEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAG 536 (625)
T ss_pred HHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcc
Confidence 433333333322 022211111111111110 1111221 22334444333 3334555556677778
Q ss_pred CHHHHHHHHHHHHh-cCCccCchHHHHHHHHhh
Q 039792 678 LIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLG 709 (819)
Q Consensus 678 ~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~ 709 (819)
..++|.++|....+ ..-.|.....++|+.+..
T Consensus 537 ~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 537 RTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred hHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 88888888777755 444455555565555544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-13 Score=147.15 Aligned_cols=261 Identities=11% Similarity=0.046 Sum_probs=144.7
Q ss_pred CCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcc
Q 039792 115 ERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVY 194 (819)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~ 194 (819)
.||.+||..+|.-||..|+.+.|- +|.-| +....+.+...|+.++.+....++.+.+. .|...
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpk---------------ep~aD 84 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPK---------------EPLAD 84 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCC---------------CCchh
Confidence 588899999999999999998888 88888 77777788888999998888888876442 67788
Q ss_pred hhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHH-HCCCCCChhhHHHHHHHhhccC
Q 039792 195 VGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMR-ETDVVHDKYLLSSVLSACSMLQ 273 (819)
Q Consensus 195 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~~ 273 (819)
+|+.|+..|...|++.. .+..++ ..-.++..+..+|....-..++.... .-+.-||..+... .....|
T Consensus 85 tyt~Ll~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~il---llv~eg 153 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAIL---LLVLEG 153 (1088)
T ss_pred HHHHHHHHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHH---HHHHHH
Confidence 99999999999988765 221111 11223333444444444333333321 1122333322111 111122
Q ss_pred ChhhHHHHHHHHHHhCCCCchhHHHHHHHHhH-hCCChHHHHHHHhcccC-CCcccHHHHHHHHHcCCChhHHHHHHHHH
Q 039792 274 FVGGGKQIHAHVLRRGMGMDVSVINVLMDFYS-KCGRVKMARRLFDEIEV-KNIISWTTLIGGYMQNSFDREAMKLFTEM 351 (819)
Q Consensus 274 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 351 (819)
-++.+.+++..+......- ++.. .+.-.. -...+++-........+ ++..+|.+++..-..+|+.+.|..++.+|
T Consensus 154 lwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2222222222111110000 0000 011110 11223333333333332 56666666666666666666666666666
Q ss_pred HHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCC
Q 039792 352 TRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCD 409 (819)
Q Consensus 352 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 409 (819)
+++|+..+..-|..++-+ .++...+..++.-|...|+.|+..|+...+-.+.+.|
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 666666666666666654 5566666666666666666666666665555444433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-12 Score=148.04 Aligned_cols=429 Identities=10% Similarity=0.008 Sum_probs=207.4
Q ss_pred HhCCChHHHHHHHhcccCCCcc---cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHH---HHHhcCCcchhh
Q 039792 305 SKCGRVKMARRLFDEIEVKNII---SWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSV---LTSCGSVEALEQ 378 (819)
Q Consensus 305 ~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~ 378 (819)
.+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|+++.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555432221 12255555555566666655555554 2322222222 223444455555
Q ss_pred HHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 039792 379 GRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNV--VSYNAMIEGYSKEEKLSEALDLFHEMRVGF 456 (819)
Q Consensus 379 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 456 (819)
|.++++.+.+.... +..++..++..|...++.++|++.++++...+. ..+-.++..+...++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 55555555554332 244555677778888888888888888876433 333333333333555656888888887652
Q ss_pred CCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHH
Q 039792 457 VPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLG 536 (819)
Q Consensus 457 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 536 (819)
+-+...+.....+..+.|-...|.++...-... +. ......| . .+.|.+..+-...++.. .-.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~--~~~~~~l-~-------~~~~a~~vr~a~~~~~~----~~~- 262 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS--AEHYRQL-E-------RDAAAEQVRMAVLPTRS----ETE- 262 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC--HHHHHHH-H-------HHHHHHHHhhccccccc----chh-
Confidence 334555566667777777776666555432110 00 0000000 0 01111111100000000 000
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 039792 537 YTQQLENEEAIKLYLELLLS-QQRPNE-F----TFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC 610 (819)
Q Consensus 537 ~~~~g~~~~A~~~~~~m~~~-g~~p~~-~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 610 (819)
+---.+.|+.-++.+... +-.|.. . ...--+-++...|+..++...++.+...+.+....+-.++.++|...
T Consensus 263 --r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 263 --RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred --hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 000123334444443321 111211 1 11122334455555666666666665555443444555566666666
Q ss_pred CCHHHHHHHHhcCCCC---------ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-----------CCC--ch-hHH
Q 039792 611 GSLEDAYETFGSTTWK---------DVACWNSMICTNAHHGEPMKALLLFREMIIEGL-----------EPN--YI-TFV 667 (819)
Q Consensus 611 g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~~-t~~ 667 (819)
++.++|..+++.+..+ +......|..+|...+++++|..+++++.+..- .|| -. .+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 6666666666554311 112234455566666666666666666654100 111 11 123
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC
Q 039792 668 GVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACN 746 (819)
Q Consensus 668 ~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 746 (819)
.+...+...|++.+|.+.++++.. .+- +......+.+++...+ ....|+...+.+..++|++......++..+...
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~--n~~l~~~~A~v~~~Rg-~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPA--NQNLRIALASIYLARD-LPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 334455566666666666666654 221 2233344444444322 445555555666666666666666666666666
Q ss_pred CCchHHHHHHHHHH
Q 039792 747 SMWADAKQVRKKMD 760 (819)
Q Consensus 747 g~~~~a~~~~~~m~ 760 (819)
|+|.+|.++.+...
T Consensus 498 ~e~~~A~~~~~~l~ 511 (822)
T PRK14574 498 QEWHQMELLTDDVI 511 (822)
T ss_pred hhHHHHHHHHHHHH
Confidence 66666666555443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-12 Score=145.64 Aligned_cols=437 Identities=11% Similarity=0.062 Sum_probs=238.3
Q ss_pred HHHHHhcCChhHHHHHHhcCCCCCeee---HHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChh
Q 039792 200 MNLYAKNGSVDDAKFVFDGLMVKTAVS---WTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVG 276 (819)
Q Consensus 200 l~~~~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 276 (819)
+-...+.|+++.|...|++..+.++.. ...++..+...|+.++|+..+++... ...........+...+...|+++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence 334678899999999998885443331 33777888888999999999988761 11112222333345677778999
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHc--CCChhHHHHHHHHHHHC
Q 039792 277 GGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQ--NSFDREAMKLFTEMTRS 354 (819)
Q Consensus 277 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 354 (819)
.|.++++.+++.... ++.++..++..|...++.++|++.++++...+......+..++.. .++..+|++.++++.+.
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999988887644 356666778888888999999998888875444332224444444 45555588888888874
Q ss_pred CCCCC-cchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHH
Q 039792 355 GWKPD-DFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMI 433 (819)
Q Consensus 355 g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li 433 (819)
.|+ ...+.....++.+.|-...|.++...- |+.++-..... =..+.|.+..+.-..++.
T Consensus 199 --~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~-----l~~~~~a~~vr~a~~~~~------- 258 (822)
T PRK14574 199 --APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ-----LERDAAAEQVRMAVLPTR------- 258 (822)
T ss_pred --CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH-----HHHHHHHHHHhhcccccc-------
Confidence 464 444556666666777666666554431 11111000000 001111111111000000
Q ss_pred HHHHhcCC---hhHHHHHHHHHHhC-CC-CCChhH----HHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHH
Q 039792 434 EGYSKEEK---LSEALDLFHEMRVG-FV-PPGLLT----FVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALID 504 (819)
Q Consensus 434 ~~~~~~g~---~~~A~~~~~~m~~~-g~-~p~~~t----~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 504 (819)
....+ .+.|+.-++.+... +. ++.... ..-.+-++...++...+...++.+...|......+-.++.+
T Consensus 259 ---~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 259 ---SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ---cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 00111 23344444444321 11 221111 12233445555556666666666655555444445556666
Q ss_pred HHHhcCChHHHHHHHHhcCCCC---------eeehhhhHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCH
Q 039792 505 AYSKCFSNKDARLVFDEMNQRD---------IVVWNAMLLGYTQQLENEEAIKLYLELLLSQ-------------QRPNE 562 (819)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~ 562 (819)
+|...+++++|..+|+.+...+ ......|.-+|...+++++|..+++++.+.- ..||-
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 6666666666666666553311 1112445566666666666666666665421 11222
Q ss_pred HH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHH
Q 039792 563 FT-FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTN 638 (819)
Q Consensus 563 ~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 638 (819)
.. +..+...+...|++.+|++.++.+....+. |..+...+.+.+...|.+.+|.+.++... +.+.......+..+
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 22 222344455566666666666666555443 55666666666666666666666665433 22333444455555
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCch
Q 039792 639 AHHGEPMKALLLFREMIIEGLEPNYI 664 (819)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (819)
...|++++|..+.+...+ ..|+..
T Consensus 495 l~l~e~~~A~~~~~~l~~--~~Pe~~ 518 (822)
T PRK14574 495 MALQEWHQMELLTDDVIS--RSPEDI 518 (822)
T ss_pred HhhhhHHHHHHHHHHHHh--hCCCch
Confidence 555666666666655555 455544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.1e-10 Score=114.99 Aligned_cols=489 Identities=13% Similarity=0.070 Sum_probs=373.4
Q ss_pred hhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhccc---CCCcccHHHHHHHHHcCCChhHHH
Q 039792 269 CSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIE---VKNIISWTTLIGGYMQNSFDREAM 345 (819)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 345 (819)
.....+.+.|+.++...++.- +.+.. |.-+|++..-++.|.++++... ..+...|-+-...--.+|+.+...
T Consensus 386 AVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 386 AVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred HHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHH
Confidence 334455555777777776642 22333 3345566677788888877654 346667777666667788888887
Q ss_pred HHHHH----HHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCC--hhHHhHHhhhhhcCCCHHHHHHHHH
Q 039792 346 KLFTE----MTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESD--NFVKNSLVDMYAKCDSLTEARKVFD 419 (819)
Q Consensus 346 ~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~ 419 (819)
++..+ +...|+..|..-|..=..+|-..|..-....|....+..|++.. ..+++.-...|.+.+.++-|+.+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 77655 45668888888888888889999999999999999999888654 4577888889999999999999998
Q ss_pred hcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccch
Q 039792 420 VMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDV 496 (819)
Q Consensus 420 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 496 (819)
...+ .+...|...+..--..|..++...+|++.... ++-....+.....-.-..|++..+..++..+.+.... +.
T Consensus 541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-se 618 (913)
T KOG0495|consen 541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SE 618 (913)
T ss_pred HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cH
Confidence 8765 46678888888878889999999999998865 4444555666666677789999999999999887665 77
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC--CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 039792 497 FAGSALIDAYSKCFSNKDARLVFDEMNQ--RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE-FTFAALITAAS 573 (819)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~ 573 (819)
..+-+-+........++.|..+|.+... ++...|.--+..---.++.++|++++++-.+. -|+. ..|..+-+.+.
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 7888888899999999999999998765 66677776666667778999999999888764 4554 45677777888
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHH
Q 039792 574 NLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLL 650 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 650 (819)
+.++++.|...|..-.+.-+ ..+..|-.|.+.-.+.|.+-.|+.+|++.. ++|...|-..|..-.++|+.+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP-~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCP-NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhccccCC-CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 88999999888876665533 367788889999999999999999999877 45778999999999999999999999
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccc---hhhhHHHHHHHHHc
Q 039792 651 FREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW---NVELGRYAAEMAIS 727 (819)
Q Consensus 651 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w---~~~~a~~~~~~~~~ 727 (819)
..+.++. +.-+...|.--|...-+.++--.....+++. ...|.+ +-..++.-| .++.++.-++++++
T Consensus 776 makALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc---e~dphV------llaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 776 MAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC---EHDPHV------LLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc---cCCchh------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888773 3334567777777777766644444443332 223321 112223235 88999999999999
Q ss_pred cCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEEECCEE
Q 039792 728 IDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEV 779 (819)
Q Consensus 728 ~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~ 779 (819)
++|++..+|..+...+...|.-++-.+++++.... .|.-|..|+-+...+
T Consensus 846 ~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 846 KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKDI 895 (913)
T ss_pred cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhhH
Confidence 99999999999999999999999999999877653 355688888765433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.8e-11 Score=126.64 Aligned_cols=617 Identities=13% Similarity=0.075 Sum_probs=371.5
Q ss_pred HcCCChhhHHHHHhccCC---CCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCc
Q 039792 98 SKANDLDGARKLFDTMSE---RNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGG 174 (819)
Q Consensus 98 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 174 (819)
...|++++|.+++.++.. .+...|.+|-..|-+.|+.++++..+--. ....
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA---AHL~----------------------- 203 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA---AHLN----------------------- 203 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH---HhcC-----------------------
Confidence 334999999999988864 45678999999999999988887765322 1222
Q ss_pred hhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHH---HHHHHhcCCchhHHHHHHHHH
Q 039792 175 NVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTI---ITGYVKSGRSDLSLNLFNQMR 251 (819)
Q Consensus 175 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~ 251 (819)
+.|...|..+-+...+.|.++.|.-.|.+..+.++.-|..+ +..|-+.|+...|.+.|.++.
T Consensus 204 ---------------p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~ 268 (895)
T KOG2076|consen 204 ---------------PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLL 268 (895)
T ss_pred ---------------CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 23345566666667777888888888877755444444433 456777888888888888887
Q ss_pred HCCCCCChhhHHH----HHHHhhccCChhhHHHHHHHHHHh-CCCCchhHHHHHHHHhHhCCChHHHHHHHhcccC----
Q 039792 252 ETDVVHDKYLLSS----VLSACSMLQFVGGGKQIHAHVLRR-GMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV---- 322 (819)
Q Consensus 252 ~~g~~p~~~t~~~----ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 322 (819)
....+.|-.-+.. +++.+...++-+.|.+.++..... +-..+...++.++..|.+...++.|......+..
T Consensus 269 ~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e 348 (895)
T KOG2076|consen 269 QLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESE 348 (895)
T ss_pred hhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccC
Confidence 6543223222322 344455566667777776666553 2233555677777888887777777766554432
Q ss_pred ----------------------CCcccHHH----HHHHHHcCCChhHHHHHHHHHHHCCCCC--CcchHHHHHHHhcCCc
Q 039792 323 ----------------------KNIISWTT----LIGGYMQNSFDREAMKLFTEMTRSGWKP--DDFACSSVLTSCGSVE 374 (819)
Q Consensus 323 ----------------------~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~ 374 (819)
++..+|+. +.-++.+....+....+...+.+..+.| +...|.-+..++...|
T Consensus 349 ~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~ 428 (895)
T KOG2076|consen 349 KDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG 428 (895)
T ss_pred CChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc
Confidence 11122222 2223334444444444455555555444 4556777888888999
Q ss_pred chhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCChhHHHHHHHH
Q 039792 375 ALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD--R-NVVSYNAMIEGYSKEEKLSEALDLFHE 451 (819)
Q Consensus 375 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (819)
.+..|..++..+......-+..+|--+..+|...|..++|...|+.+.. | +...--+|-..+.+.|+.++|++.+..
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 9999999999888876666778888888899999999999999988765 3 233444566778888999999999888
Q ss_pred HH--------hCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCC----------------------ccchhhHHH
Q 039792 452 MR--------VGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGV----------------------FLDVFAGSA 501 (819)
Q Consensus 452 m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~----------------------~~~~~~~~~ 501 (819)
|. ..+..|+..........+...|+.++-..+-..|+.... .........
T Consensus 509 ~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~ 588 (895)
T KOG2076|consen 509 IINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQ 588 (895)
T ss_pred ccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHH
Confidence 63 233555566666666677777877776665555543211 111222222
Q ss_pred HHHHHHhcCChHHHHHHHHhc--------CCCCee----ehhhhHHHHHhcCCHHHHHHHHHHHHHCCC--CCCH---HH
Q 039792 502 LIDAYSKCFSNKDARLVFDEM--------NQRDIV----VWNAMLLGYTQQLENEEAIKLYLELLLSQQ--RPNE---FT 564 (819)
Q Consensus 502 li~~~~~~g~~~~A~~~~~~~--------~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~t 564 (819)
++.+-.+.++.....+-...- ..-... .+.-++.++++.+++++|+.+...+..... .++. ..
T Consensus 589 ~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l 668 (895)
T KOG2076|consen 589 IIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKEL 668 (895)
T ss_pred HHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHH
Confidence 333333333322222111111 011111 233466778889999999998888775432 2222 11
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCC--hHhHHHHHH
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKL-GLDF---DSFITSALIDMYAKCGSLEDAYETFGSTT--WKD--VACWNSMIC 636 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~li~ 636 (819)
=...+.++...+++..|...++.++.. ++.. -...||...+...+.|+-.-=.+.+.... .++ +.....-..
T Consensus 669 ~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh 748 (895)
T KOG2076|consen 669 QFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGH 748 (895)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeech
Confidence 234566678889999999988888754 2211 24456655555555554443344443332 222 222222222
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHH-HHHccC----------CHHHHHHHHHHHHh-cCCccCchHHHHH
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLS-ACSHAG----------LIEDGLDHFQSMAG-FGIEPGMEHYASV 704 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~g----------~~~~a~~~~~~m~~-~g~~p~~~~y~~l 704 (819)
-....+.+.-|+..+-+... ..||....+.++. ++.+.- .+-+|..++++-.+ .+..-.-+.+-.+
T Consensus 749 ~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNi 826 (895)
T KOG2076|consen 749 NLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNI 826 (895)
T ss_pred hHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 33456778888888777776 6788655544443 444321 23456666655555 2221111222222
Q ss_pred HHHhhcccchhhhHHHHHHHHHccCCCCc------------hhHHHHHHHHHhCCCchHHHHHHHH
Q 039792 705 VSLLGRNVWNVELGRYAAEMAISIDPMDS------------GSYTLLSNTFACNSMWADAKQVRKK 758 (819)
Q Consensus 705 i~~l~r~~w~~~~a~~~~~~~~~~~p~~~------------~~~~~l~~~y~~~g~~~~a~~~~~~ 758 (819)
..+|...+ =+..|...+++++++.|.+. .+-..|.-||-.+|...-|.++.++
T Consensus 827 gRayh~~g-l~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 827 GRAYHQIG-LVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHcc-cHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 22222211 55788889999999976421 2345678899999999999998764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-11 Score=119.79 Aligned_cols=467 Identities=12% Similarity=0.077 Sum_probs=287.8
Q ss_pred HHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHH-HHHHhhccCChhhHHHHHHHHHHhCCCCch----hHHHHHHHHhH
Q 039792 231 ITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSS-VLSACSMLQFVGGGKQIHAHVLRRGMGMDV----SVINVLMDFYS 305 (819)
Q Consensus 231 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~ 305 (819)
..-|..+....+|+..|+-..+....|+...... +-+.+.+.+.+..|...+...+..-...+. .+.+.+--.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 3456666777888888888888777777654432 234456677788888888877766433332 23444444577
Q ss_pred hCCChHHHHHHHhccc--CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHH--------HHHHHhcCCcc
Q 039792 306 KCGRVKMARRLFDEIE--VKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACS--------SVLTSCGSVEA 375 (819)
Q Consensus 306 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--------~ll~~~~~~~~ 375 (819)
+.|.++.|+.-|+... .||..+--.|+-++..-|+.++..+.|.+|..--..||..-|. .|+.-..+..
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd- 366 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND- 366 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH-
Confidence 8899999999998876 4665543334445556788888888899888765555554441 1111111110
Q ss_pred hhhHHHHHHHHHHcCCC---CChhHHhHHhh----hhhcCCCHHHHHHHHHhcCC-CC-cchHHHHHHHHHhcCChhHHH
Q 039792 376 LEQGRQVHAYSFKANIE---SDNFVKNSLVD----MYAKCDSLTEARKVFDVMAD-RN-VVSYNAMIEGYSKEEKLSEAL 446 (819)
Q Consensus 376 ~~~a~~~~~~~~~~g~~---~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~-~~-~~~~~~li~~~~~~g~~~~A~ 446 (819)
.+..|.+..-. .-..+-.-+|. --...|. +-..+.++.-.. += ...--.-...|.++|+++.|+
T Consensus 367 ------~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~-dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 367 ------HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC-DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred ------HHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc-HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 11111111000 00000000100 0000000 000001100000 00 000001123478899999999
Q ss_pred HHHHHHHhCCCCCChhHH--HHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC
Q 039792 447 DLFHEMRVGFVPPGLLTF--VSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ 524 (819)
Q Consensus 447 ~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 524 (819)
++++-..+..-+.-...- .+++.......++..|.+.-+..+...-- +......-.+.-...|++++|.+.+.+...
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 999888665433322222 23333333344666666665555432110 111111111223356899999999999988
Q ss_pred CCeeehhhhHH---HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 039792 525 RDIVVWNAMLL---GYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITS 601 (819)
Q Consensus 525 ~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 601 (819)
.|..+-.+|.. .+-..|+.++|++.|-++..- +.-+...+..+.+.|....+...|.+++.+.... ++.|+.+.+
T Consensus 519 ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils 596 (840)
T KOG2003|consen 519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS 596 (840)
T ss_pred CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence 77665555443 366789999999999887643 3456667778888888888999999988877665 345899999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHH-HccC
Q 039792 602 ALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSAC-SHAG 677 (819)
Q Consensus 602 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g 677 (819)
-|.+.|-+.|+-..|....-.-- +-|+.+..=|..-|....-+++|+.+|++..- +.|+..-|..++..| .+.|
T Consensus 597 kl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcc
Confidence 99999999999999987654332 45666666677778888889999999999877 899999998887755 5789
Q ss_pred CHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcc
Q 039792 678 LIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN 711 (819)
Q Consensus 678 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~ 711 (819)
++.+|.++++.... .+..+.+....++...|.-
T Consensus 675 nyqka~d~yk~~hr-kfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred cHHHHHHHHHHHHH-hCccchHHHHHHHHHhccc
Confidence 99999999988865 3456777777788777643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-11 Score=120.81 Aligned_cols=218 Identities=12% Similarity=0.096 Sum_probs=176.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 039792 537 YTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDA 616 (819)
Q Consensus 537 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 616 (819)
+.-.|+.-.|.+-|+..+.....++.. |.-+-..+....+-++....|....+.++. ++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 344688889999999998865444432 777777889999999999999999998876 888999999999999999999
Q ss_pred HHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 039792 617 YETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGF 692 (819)
Q Consensus 617 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 692 (819)
..=|++.. +.++..|-.+..+.-+.++++++...|++.++ --|+ ...|+.....+...+++++|.+.|+..++
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 99999877 33566777777777788899999999999998 4566 46899999999999999999999999987
Q ss_pred CCccCch-HHHHHHHHhhcc----cc--hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 693 GIEPGME-HYASVVSLLGRN----VW--NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 693 g~~p~~~-~y~~li~~l~r~----~w--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
+.|+.+ ++....-+.+++ .| |+..|....++++++||....+|..|+.+-.+.|+.++|.++|++-.
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred -hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 222210 010011111111 37 99999999999999999999999999999999999999999998754
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.1e-09 Score=112.76 Aligned_cols=567 Identities=11% Similarity=0.087 Sum_probs=366.1
Q ss_pred CCCcchhhHHHHHHHhcCChhHHHHHHhcC---CCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHH
Q 039792 190 DRDVYVGTSLMNLYAKNGSVDDAKFVFDGL---MVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVL 266 (819)
Q Consensus 190 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 266 (819)
+.+...|-.|-..|-..|+.+++...+=.. ...|..-|-.+-.-..+.|+++.|.-.|.+..+.. +++...+---.
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers 248 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERS 248 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHH
Confidence 345567888999999999999998776433 55677889999999999999999999999998763 23333344445
Q ss_pred HHhhccCChhhHHHHHHHHHHhCCCCchhHHHH----HHHHhHhCCChHHHHHHHhcccC--C---CcccHHHHHHHHHc
Q 039792 267 SACSMLQFVGGGKQIHAHVLRRGMGMDVSVINV----LMDFYSKCGRVKMARRLFDEIEV--K---NIISWTTLIGGYMQ 337 (819)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~ 337 (819)
..|-+.|+...|..-+..+.....+.|..-.-. .+..|...++-+.|.+.++.... . +...+|.++..|.+
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 678889999999999999988765434333333 35556677777889888887764 2 34568999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCc----------------------chHH----HHHHHhcCCcchhhHHHHHHHHHHcCC
Q 039792 338 NSFDREAMKLFTEMTRSGWKPDD----------------------FACS----SVLTSCGSVEALEQGRQVHAYSFKANI 391 (819)
Q Consensus 338 ~g~~~~A~~~~~~m~~~g~~p~~----------------------~t~~----~ll~~~~~~~~~~~a~~~~~~~~~~g~ 391 (819)
...++.|......+......+|. ..|. .+.-++.+.+..+....+.....+..+
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~ 408 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV 408 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC
Confidence 99999999999888762222222 1221 233345566666666677777777664
Q ss_pred CC--ChhHHhHHhhhhhcCCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHH
Q 039792 392 ES--DNFVKNSLVDMYAKCDSLTEARKVFDVMAD----RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPG-LLTF 464 (819)
Q Consensus 392 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 464 (819)
.+ +...|.-+.++|...|++.+|..+|..+.. .+...|-.+..+|...|.+++|++.|+..... .|+ ...-
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~R 486 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDAR 486 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhh
Confidence 43 566788899999999999999999998875 45678999999999999999999999998764 333 3344
Q ss_pred HHHHHHhhccCchHhHHHHHHHHH--------HhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC------------
Q 039792 465 VSLLGLSSSVFSLESSKQIHGLII--------KYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ------------ 524 (819)
Q Consensus 465 ~~ll~~~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------ 524 (819)
.++-..+.+.|+.++|.+.+..+. ..+..|+....-...+.|...|+.++=..+-..|..
T Consensus 487 i~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~ 566 (895)
T KOG2076|consen 487 ITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRN 566 (895)
T ss_pred hhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 556667788899999999888854 234455666666667778888887664333322221
Q ss_pred --------------CCeeehhhhHHHHHhcCCHHHHH------HHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHH
Q 039792 525 --------------RDIVVWNAMLLGYTQQLENEEAI------KLYLELLLSQQRPNE--FTFAALITAASNLGSLKHGQ 582 (819)
Q Consensus 525 --------------~~~~~~~~li~~~~~~g~~~~A~------~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~ 582 (819)
....+....+.+-.+.++..... ..+.--...|+.-+. ..+.-++.++++.+++++|.
T Consensus 567 ~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl 646 (895)
T KOG2076|consen 567 KKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEAL 646 (895)
T ss_pred HHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 01111112222222222211111 011111112222222 23455667778888888888
Q ss_pred HHHHHHHHhCC--CCch---hHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----C---hHhHHHHHHHHHhCCChHHHHH
Q 039792 583 QFHNHLIKLGL--DFDS---FITSALIDMYAKCGSLEDAYETFGSTTWK-----D---VACWNSMICTNAHHGEPMKALL 649 (819)
Q Consensus 583 ~~~~~~~~~~~--~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~li~~~~~~g~~~~A~~ 649 (819)
.+...+..... .++. ..-...+.+....+++..|.+.++.+... + ...||...+...++|+-.--..
T Consensus 647 ~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R 726 (895)
T KOG2076|consen 647 SVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLR 726 (895)
T ss_pred HHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777765322 1111 23344556666778888888888776633 3 3467766666666665444444
Q ss_pred HHHHHHHcCCCCCchhHHHHH--HHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHH-H-----hhccc----chhhh
Q 039792 650 LFREMIIEGLEPNYITFVGVL--SACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVS-L-----LGRNV----WNVEL 717 (819)
Q Consensus 650 ~~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~-~-----l~r~~----w~~~~ 717 (819)
++..... ..|+......++ .-....+.+..|...+-.... ..|+...++..+. + ++|.. ..+-.
T Consensus 727 ~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~q 802 (895)
T KOG2076|consen 727 LIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQ 802 (895)
T ss_pred HHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4444332 334332222222 234456777778776544433 4455444443221 1 11110 03345
Q ss_pred HHHHHHHHHccCCC--CchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 718 GRYAAEMAISIDPM--DSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 718 a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
|.....+..++--. .-.+.+.++.+|-..|-..=|...+++..+..
T Consensus 803 G~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 803 GFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 55666666666443 56789999999999999999999999987643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-11 Score=118.43 Aligned_cols=470 Identities=11% Similarity=0.036 Sum_probs=289.2
Q ss_pred hhhHHHHHHHhcCChhHHHHHHhcCCCC----C-eeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhH----HHH
Q 039792 195 VGTSLMNLYAKNGSVDDAKFVFDGLMVK----T-AVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLL----SSV 265 (819)
Q Consensus 195 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~----~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~l 265 (819)
+...|..-|.......+|+..++-+... | -..--.+-..+.+..++.+|+++|+.....-...+..+- +.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3344455566666677777777644321 1 111122345567777888888888766654333333333 333
Q ss_pred HHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccC----------------CCcccHH
Q 039792 266 LSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV----------------KNIISWT 329 (819)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~ 329 (819)
--.+.+.|.++.|..-|+...+. .|+..+.-.|+-.+.--|+-++..+.|..|.. |+....|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 34467888999998888887765 35655555566666667888888888887741 1111111
Q ss_pred H-----HHHHHHcCC--ChhHHHHHHHHHHHCCCCCCcc-hHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHH
Q 039792 330 T-----LIGGYMQNS--FDREAMKLFTEMTRSGWKPDDF-ACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSL 401 (819)
Q Consensus 330 ~-----li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 401 (819)
- +++-.-+.. +.++++-.-.++..--+.||-. -|... .+.+..-.-..+..+.. -.-
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwc-------------le~lk~s~~~~la~dle--i~k 425 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWC-------------LESLKASQHAELAIDLE--INK 425 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHH-------------HHHHHHhhhhhhhhhhh--hhH
Confidence 1 111111111 1122222222222211222211 01111 11111100000000111 111
Q ss_pred hhhhhcCCCHHHHHHHHHhcCCCCcchHHHHH-----HHHHh-cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC
Q 039792 402 VDMYAKCDSLTEARKVFDVMADRNVVSYNAMI-----EGYSK-EEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVF 475 (819)
Q Consensus 402 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li-----~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 475 (819)
..-|.+.|+++.|.++++-....|..+-++-. --|.+ -.++.+|...-+..... -+-+....+.--+.....|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-dryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-DRYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-cccCHHHhhcCCceeeecC
Confidence 23467889999999998888776544332221 12222 23455665555443321 1111111111122334578
Q ss_pred chHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHH
Q 039792 476 SLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLE 552 (819)
Q Consensus 476 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 552 (819)
+++.|...+.+.....-......||. .-.+-+.|++++|+..|-++.. .+....-.+.+.|-...++..|++++.+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 99999999998887654444444442 2346778999999999987653 5666667778889999999999999977
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHh
Q 039792 553 LLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVAC 630 (819)
Q Consensus 553 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~ 630 (819)
.... ++.|+..++.|...|-+.|+-..|.+.+-.--+. ++.+..+...|...|....-+++|+..|++.. +|+..-
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 6653 5557788889999999999999999988766554 45588999999999999999999999999866 999999
Q ss_pred HHHHHHHH-HhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHH
Q 039792 631 WNSMICTN-AHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQ 687 (819)
Q Consensus 631 ~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 687 (819)
|..||..| .+.|++++|+.+|+....+ +.-|...+..|+..|...|.- ++.++-+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~-d~key~~ 717 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK-DAKEYAD 717 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch-hHHHHHH
Confidence 99998765 5679999999999999762 455667888899999888863 3344433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.6e-08 Score=100.82 Aligned_cols=416 Identities=12% Similarity=0.044 Sum_probs=323.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHH
Q 039792 340 FDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFD 419 (819)
Q Consensus 340 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (819)
+...-.+++++.++. .|+.+.+. .+.....+.+.|+-++..+++.- +.+.. |.-+|.+..-++.|.++++
T Consensus 361 ~~~~K~RVlRKALe~--iP~sv~LW---KaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLN 430 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEH--IPRSVRLW---KAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLN 430 (913)
T ss_pred HHHHHHHHHHHHHHh--CCchHHHH---HHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHH
Confidence 334445566666653 45554332 33344555666888887777642 22333 3445566777889999998
Q ss_pred hcCC---CCcchHHHHHHHHHhcCChhHHHHHHHH----HHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCC
Q 039792 420 VMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHE----MRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGV 492 (819)
Q Consensus 420 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 492 (819)
+..+ .+...|-+-...--.+|+.+...+++.+ +...|+..+..-+..=..+|...|..-.+..|....+..|+
T Consensus 431 kaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigv 510 (913)
T KOG0495|consen 431 KAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGV 510 (913)
T ss_pred HHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc
Confidence 8775 4677787777777788999988888776 46689999999999999999999999999999999998888
Q ss_pred ccc--hhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039792 493 FLD--VFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAA 567 (819)
Q Consensus 493 ~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 567 (819)
... ..++..-.+.|.+.+.++-|+.+|....+ .+...|...+..=-.+|..++...+|++.... ++-....|..
T Consensus 511 Eeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM 589 (913)
T KOG0495|consen 511 EEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLM 589 (913)
T ss_pred ccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHH
Confidence 643 45677777889999999999999998876 35567877777777789999999999999876 4445566667
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChH
Q 039792 568 LITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPM 645 (819)
Q Consensus 568 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 645 (819)
.....-..|++..|+.++..+.+..+. +..++-+-+........++.|+.+|.+.. .+....|.--+......++.+
T Consensus 590 ~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHH
Confidence 777778889999999999999998876 88899999999999999999999998876 677778877777777889999
Q ss_pred HHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCch-HHHHHHHHhhcccchhhhHHHHHH
Q 039792 646 KALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGME-HYASVVSLLGRNVWNVELGRYAAE 723 (819)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~-~y~~li~~l~r~~w~~~~a~~~~~ 723 (819)
+|++++++.++ .-|+-. .|..+...+-+.++++.|.+.|..-.+ .-|... .|-.+.++=-+.+ ++-.|+..++
T Consensus 669 eA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~-~~~rAR~ild 743 (913)
T KOG0495|consen 669 EALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDG-QLVRARSILD 743 (913)
T ss_pred HHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhc-chhhHHHHHH
Confidence 99999999998 788864 688888899999999999998876544 234433 3444444444433 7889999999
Q ss_pred HHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEE
Q 039792 724 MAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIE 774 (819)
Q Consensus 724 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~ 774 (819)
++.-.+|+|+..|...+.+-.+.|.-+.|..+..+..+.- +..|.-|.|
T Consensus 744 rarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaE 792 (913)
T KOG0495|consen 744 RARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAE 792 (913)
T ss_pred HHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHH
Confidence 9999999999999999999999999999999888776532 334545543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.2e-13 Score=134.52 Aligned_cols=250 Identities=17% Similarity=0.173 Sum_probs=103.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhc-CC----CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 039792 501 ALIDAYSKCFSNKDARLVFDEM-NQ----RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNL 575 (819)
Q Consensus 501 ~li~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 575 (819)
.+...+.+.|++++|.+++++. .. .|...|..+.......+++++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4466777888888888888543 22 24556666666677788899999999988875432 44456666665 688
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChHhHHHHHHHHHhCCChHHHHHH
Q 039792 576 GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-----WKDVACWNSMICTNAHHGEPMKALLL 650 (819)
Q Consensus 576 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 650 (819)
+++++|..+.....+.. +++..+..++..|.+.|+++++.++++... ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88999988887766543 456677788888999999999999888743 45677888899999999999999999
Q ss_pred HHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCc-hHHHHHHHHhhcccchhhhHHHHHHHHHc
Q 039792 651 FREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGM-EHYASVVSLLGRNVWNVELGRYAAEMAIS 727 (819)
Q Consensus 651 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~-~~y~~li~~l~r~~w~~~~a~~~~~~~~~ 727 (819)
+++.++ ..|+. .....++..+...|+.+++.++++...+ ..-.|.. ..++.....+| +.+.|...++++++
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg----~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG----RYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-----HHHHHHHHHHHHH
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc----cccccccccccccc
Confidence 999998 78864 5688889999999999999999988887 3333332 23333334444 77999999999999
Q ss_pred cCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 728 IDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 728 ~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
..|+|+.....++.++...|+.++|.+++++..
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HSTT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999998764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-12 Score=131.70 Aligned_cols=253 Identities=16% Similarity=0.138 Sum_probs=110.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH-HHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCCh
Q 039792 434 EGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLL-GLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSN 512 (819)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 512 (819)
..+.+.|++++|++++++-.....+|+...|..++ ..+...++.+.+...++.+...+.. ++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 33444455555555554333222223333333322 2333445555555555555544333 44556666666 678888
Q ss_pred HHHHHHHHhcCC--CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 039792 513 KDARLVFDEMNQ--RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQ-QRPNEFTFAALITAASNLGSLKHGQQFHNHLI 589 (819)
Q Consensus 513 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 589 (819)
++|.+++...-+ ++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|...++..+
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888776543 566777888888999999999999999977532 34567778888888899999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chh
Q 039792 590 KLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YIT 665 (819)
Q Consensus 590 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 665 (819)
+..+. |..+.+.++..+...|+.+++.++++... +.|...|..+..+|...|+.++|+..|++..+ ..|+ ..+
T Consensus 174 ~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~~~ 250 (280)
T PF13429_consen 174 ELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDPLW 250 (280)
T ss_dssp HH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-HHH
T ss_pred HcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--cccccccc
Confidence 98765 78888999999999999999777776554 56777889999999999999999999999988 6675 467
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 666 FVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 666 ~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
...+..++...|+.++|.++..+...
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 78888899999999999998877643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.4e-11 Score=123.37 Aligned_cols=254 Identities=14% Similarity=0.110 Sum_probs=175.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC------CCeeehhhhHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHH
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ------RDIVVWNAMLLGYTQQLENEEAIKLYL-ELLLSQQRPNEFTFAALIT 570 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~ 570 (819)
+...+..+|...+++++|.++|+.+.+ .+...|.+.+--+-. +-++..+. ++.+. -+-.+.||..+-+
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca~GN 429 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCALGN 429 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHHhcc
Confidence 334455555555555555555555543 233344444332221 12222222 22221 2334567777777
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChH---hHHHHHHHHHhCCChHHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVA---CWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A 647 (819)
+++-.++.+.|.+.|++.++.++. ....|+.+..-+.....+|.|...|+.....|+. .|--|...|.+.++++.|
T Consensus 430 cfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHH
Confidence 777777777777777777765543 5667777777777777888888888887765555 455567788999999999
Q ss_pred HHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcC-Ccc-CchHHHHHHHHhhcccchhhhHHHHHHH
Q 039792 648 LLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFG-IEP-GMEHYASVVSLLGRNVWNVELGRYAAEM 724 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g-~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~ 724 (819)
.-.|++..+ +.|. .+....+...+-+.|+.|+|++++++..... -.| ...+-+.++-.++ +.+.|.+.+|+
T Consensus 509 e~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~----~~~eal~~LEe 582 (638)
T KOG1126|consen 509 EFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLG----RYVEALQELEE 582 (638)
T ss_pred HHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhc----chHHHHHHHHH
Confidence 999999988 8885 4677778888999999999999999987622 222 1233344444555 67889999999
Q ss_pred HHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 725 AISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 725 ~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
+.++.|+++..|.+++.+|-+.|+.+.|..-+.-|.+..
T Consensus 583 Lk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 583 LKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 999999999999999999999999999999988887643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-08 Score=100.22 Aligned_cols=254 Identities=11% Similarity=0.053 Sum_probs=183.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCc--cchhhHHHHHHHHHhcCC
Q 039792 434 EGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVF--LDVFAGSALIDAYSKCFS 511 (819)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~~~~~g~ 511 (819)
.++....+.++++.-.......|.+-+...-+....+.-...++++|+.+|+.+.+..+- -|..+|+.++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 445555567777777777777777666666665666666778888888888888876432 356666665544333333
Q ss_pred hHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHH
Q 039792 512 NKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE-FTFAALITAASNLGSLKHGQQFHNHLIK 590 (819)
Q Consensus 512 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 590 (819)
+.---.....+.+--+.|..++.+-|.-.++.++|...|++..+. .|.. ..|+.+-.-+....+...|.+-++.+++
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 322222222333445667777778888888888888888888763 4443 4566666677888888888888888888
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHH
Q 039792 591 LGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFV 667 (819)
Q Consensus 591 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 667 (819)
.++. |-..|-.|..+|.-.+...-|.-.|++.. +.|...|.+|..+|.+.++.++|++.|.+....| ..+...+.
T Consensus 393 i~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~ 470 (559)
T KOG1155|consen 393 INPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV 470 (559)
T ss_pred cCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence 7765 77888888888888888888888888765 5578888888888888888888888888888754 33556788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 039792 668 GVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 668 ~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.|...|-+.++.++|.++|.+-++
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888888888888888888877665
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.3e-10 Score=106.06 Aligned_cols=311 Identities=14% Similarity=0.114 Sum_probs=188.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccc---hhhHHHHHHHHHhcCChHH
Q 039792 438 KEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLD---VFAGSALIDAYSKCFSNKD 514 (819)
Q Consensus 438 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~ 514 (819)
-+++.++|.++|-+|.+. -+.+..+-.++-+.+.+.|..+.|.++|..+.++.--+. ....-.|..-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D--------- 116 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD--------- 116 (389)
T ss_pred hhcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH---------
Confidence 357889999999999863 222233444555666666777777777766655321111 1111223333
Q ss_pred HHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 039792 515 ARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLD 594 (819)
Q Consensus 515 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 594 (819)
|...|-++.|..+|..+.+.| .--......|+..|-...++++|.++-..+.+.+.+
T Consensus 117 ----------------------ym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 117 ----------------------YMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred ----------------------HHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 444555555555555554432 112234445555555555555555555555554443
Q ss_pred Cch----hHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--hh
Q 039792 595 FDS----FITSALIDMYAKCGSLEDAYETFGSTTWK---DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--IT 665 (819)
Q Consensus 595 ~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t 665 (819)
+.. ..|.-|...+.-..+++.|..++.+.... .+..=-.+...+...|+++.|++.++...+. .|+. .+
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~ev 251 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEV 251 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHH
Confidence 321 12334444555556667777777665522 2333334556677778888888888888873 4553 46
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh--cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 666 FVGVLSACSHAGLIEDGLDHFQSMAG--FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 666 ~~~ll~a~~~~g~~~~a~~~~~~m~~--~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
...|..+|.+.|+.+++...+..+.+ .|..+....|..+...-| .+.|.....+-+...|.--+.|-.+-.-.
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G-----~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEG-----IDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhC-----hHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 77788888888888888888888877 343333333333333223 24555556666677776555555544434
Q ss_pred H--hCCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCC
Q 039792 744 A--CNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKS 788 (819)
Q Consensus 744 ~--~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~~~ 788 (819)
. ..|+|.+...+.+.|....++..|-+..-..+-+.|.|.+.=++
T Consensus 327 ~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~CPs 373 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHCPS 373 (389)
T ss_pred ccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeCCC
Confidence 3 34779999999999999999999999999999999999985444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-09 Score=108.53 Aligned_cols=355 Identities=13% Similarity=0.101 Sum_probs=253.4
Q ss_pred CCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH--HHHH
Q 039792 391 IESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTF--VSLL 468 (819)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll 468 (819)
...|.+.+-...-.+.+.|....|+..|......-+..|.+-+.-..-..+.+.+. ... .|.+.|...+ -.+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~----~l~-~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILS----ILV-VGLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHH----HHH-hcCcccchHHHHHHHH
Confidence 34444433333344566788888888888776544444554443322222222222 111 1222222222 1234
Q ss_pred HHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCC------eeehhhhHHHHHhcCC
Q 039792 469 GLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRD------IVVWNAMLLGYTQQLE 542 (819)
Q Consensus 469 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~ 542 (819)
.++....+.+++.+=.......|+..+...-+....+.-...+++.|+.+|+++.+.| ..+|...+ |.++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 5566666778888888888888888777777777777788899999999999998744 44555443 333332
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 039792 543 NEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGS 622 (819)
Q Consensus 543 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 622 (819)
..+..+.+-...--+--+.|..++.+-++-.++.++|..+|+...+.++. ....|+.+.+-|....+...|.+-+++
T Consensus 313 --skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 --SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred --HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 22233332222112333456677777788888999999999999998876 778899999999999999999999987
Q ss_pred CC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCc
Q 039792 623 TT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGM 698 (819)
Q Consensus 623 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 698 (819)
.. +.|-..|-.|.++|...+...=|+-.|++..+ ++|++ ..|.+|..+|.+.++.++|++.|+.....|.. +.
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~ 466 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG 466 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence 66 66888999999999999999999999999998 89965 78999999999999999999999999986544 44
Q ss_pred hHHHHHHHHhhcccchhhhHHHHHHHHHc-------cCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 699 EHYASVVSLLGRNVWNVELGRYAAEMAIS-------IDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 699 ~~y~~li~~l~r~~w~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
..|..+.+++-+-. +.+.|.+.+++-++ .+|+-..+-.-|+.-+.+.++|++|...-...
T Consensus 467 ~~l~~LakLye~l~-d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 467 SALVRLAKLYEELK-DLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 56777777776543 77888888888887 44555556667899999999999999876543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.9e-08 Score=100.51 Aligned_cols=517 Identities=14% Similarity=0.163 Sum_probs=308.6
Q ss_pred CCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHH-CCCCCChhhHHHHH
Q 039792 188 GFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRE-TDVVHDKYLLSSVL 266 (819)
Q Consensus 188 g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll 266 (819)
+..|+...|-.+-+. ++.+.....+|| ..|-.-+.-+.++|+.......|+.... ..+......|...|
T Consensus 76 ~~~~T~~~~~~vn~c------~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl 145 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNC------FERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYL 145 (835)
T ss_pred ccCCCChHHHHHHHH------HHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHH
Confidence 445665556555444 345566666665 4687778888889999999888887654 34445556777888
Q ss_pred HHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcc----------cHHHHHHHHH
Q 039792 267 SACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNII----------SWTTLIGGYM 336 (819)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~ 336 (819)
......+-.+.+..+++..++. ++...+-.|..+++.+++++|-+.+..+...+.. .|+-+-...+
T Consensus 146 ~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis 221 (835)
T KOG2047|consen 146 KFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLIS 221 (835)
T ss_pred HHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHH
Confidence 8888888888888888887765 3444677778888888888888888887754332 2443333333
Q ss_pred cCCChhHHHH---HHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHH
Q 039792 337 QNSFDREAMK---LFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTE 413 (819)
Q Consensus 337 ~~g~~~~A~~---~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 413 (819)
++-+.-..+. +++.+.. .-||.. ...+++|.+-|.+.|.++.
T Consensus 222 ~~p~~~~slnvdaiiR~gi~--rftDq~---------------------------------g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 222 QNPDKVQSLNVDAIIRGGIR--RFTDQL---------------------------------GFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred hCcchhcccCHHHHHHhhcc--cCcHHH---------------------------------HHHHHHHHHHHHHhhhhHH
Confidence 3322211111 1111111 112211 2345566666666666666
Q ss_pred HHHHHHhcCC--CCcchHHHHHHHHHhc----------------CC------hhHHHHHHHHHHhCC-----------CC
Q 039792 414 ARKVFDVMAD--RNVVSYNAMIEGYSKE----------------EK------LSEALDLFHEMRVGF-----------VP 458 (819)
Q Consensus 414 A~~~~~~m~~--~~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~g-----------~~ 458 (819)
|..+|++... -.+.-|..+.++|++- ++ ++-.+.-|+.+...+ -+
T Consensus 267 arDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 267 ARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 6666655332 1222233333333221 11 112222333332211 11
Q ss_pred CChhHHHHHHHHhhccCchHhHHHHHHHHHHh-CC----ccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCee-----
Q 039792 459 PGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY-GV----FLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIV----- 528 (819)
Q Consensus 459 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----- 528 (819)
-+..++..-. -...|+..+....+.++++. .+ ..-...+..+.+.|-..|+++.|+.+|++..+-+-.
T Consensus 347 ~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 347 HNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred ccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 1112222111 12234445555556655542 11 112345778889999999999999999998874433
Q ss_pred --ehhhhHHHHHhcCCHHHHHHHHHHHHHCC----------CCC-------CHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 039792 529 --VWNAMLLGYTQQLENEEAIKLYLELLLSQ----------QRP-------NEFTFAALITAASNLGSLKHGQQFHNHLI 589 (819)
Q Consensus 529 --~~~~li~~~~~~g~~~~A~~~~~~m~~~g----------~~p-------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 589 (819)
+|..-...=.++.+++.|+++.+.....- -.| +...|...++.-...|-++..+.+++.++
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444456778899999887764311 111 22345556666677789999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChH-hHHHHHHHHHhC---CChHHHHHHHHHHHHcCCCC
Q 039792 590 KLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT----WKDVA-CWNSMICTNAHH---GEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 590 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p 661 (819)
+..+. ++.+.....-.+....-++++.+++++.. .|++. .|++.+.-+.+. -..+.|..+|++.++ |..|
T Consensus 505 dLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 505 DLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 98775 44444444555666777999999999876 45553 788877666543 368999999999998 7888
Q ss_pred CchhHHHHHH--HHHccCCHHHHHHHHHHHHhcCCccC--chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCc--hh
Q 039792 662 NYITFVGVLS--ACSHAGLIEDGLDHFQSMAGFGIEPG--MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDS--GS 735 (819)
Q Consensus 662 ~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~--~~ 735 (819)
...-+..|+- .=..-|....|++++++... ++.+. ...|+..|.--.. +.-+..-+.+++++++.-|++- ..
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae-~yGv~~TR~iYekaIe~Lp~~~~r~m 660 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAE-IYGVPRTREIYEKAIESLPDSKAREM 660 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHH-HhCCcccHHHHHHHHHhCChHHHHHH
Confidence 6543333332 33356899999999999654 33332 3445554431111 1123445667888888877643 34
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHH
Q 039792 736 YTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 736 ~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
-...+.+-.+.|..+.|..++.--
T Consensus 661 clrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 661 CLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhh
Confidence 455677777788888888887644
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.1e-10 Score=117.78 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHH
Q 039792 561 NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICT 637 (819)
Q Consensus 561 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 637 (819)
+......+..++...|+.+.|..++....+... +.... ++......|+.+++.+..++.. +.|...+.++...
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl 337 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQL 337 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 444444555555555555555555555544222 22111 1122223355555555544433 2233344455555
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
+...|++++|.+.|+++.+ ..|+..++..+..++.+.|+.++|.+++++-
T Consensus 338 ~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 338 LMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555555 4555555555555555555555555555544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.3e-10 Score=117.69 Aligned_cols=219 Identities=10% Similarity=0.053 Sum_probs=113.4
Q ss_pred HHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH
Q 039792 503 IDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE-------FTFAALITAA 572 (819)
Q Consensus 503 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~ 572 (819)
...+...|+.+.|...++++.+ | ++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++...
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666665544 2 3344555566666666677777666666665443222 1222222222
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHH
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFR 652 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 652 (819)
....+.+...++++.+.+.- +.++.....+...+...|+.++|.+++++..+.....--.++.+....++.+++++..+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHH
Confidence 22333333344444332221 22455555555555566666666555554442111111112233334455555555555
Q ss_pred HHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCC
Q 039792 653 EMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPM 731 (819)
Q Consensus 653 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~ 731 (819)
+..+ -.|+.. .+..+...|.+.|++++|.+. ++++++..|+
T Consensus 319 ~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~------------------------------------le~al~~~P~ 360 (398)
T PRK10747 319 QQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLA------------------------------------FRAALKQRPD 360 (398)
T ss_pred HHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHH------------------------------------HHHHHhcCCC
Confidence 5554 345443 344555555555555555555 5555566665
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 732 DSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 732 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+ ..+..|+.++.+.|+.++|.+.+++-..
T Consensus 361 ~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 361 A-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 4566788888888888888888776543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-07 Score=94.52 Aligned_cols=427 Identities=12% Similarity=0.143 Sum_probs=272.4
Q ss_pred hcCChhHHHHHHhcCCC---CCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHH
Q 039792 205 KNGSVDDAKFVFDGLMV---KTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQI 281 (819)
Q Consensus 205 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 281 (819)
..+++..|+.+|++... ++...|-.-+..-.++..+..|..++++....=...|..=| --+-.--..|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence 45677888899987743 45667777788888889999999999988764333333322 223333456888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhccc--CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 039792 282 HAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIE--VKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPD 359 (819)
Q Consensus 282 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 359 (819)
|+.-.+ ..|+...|++.|++=.+-..++.|..++++.. .|++.+|--..+-=-++|....|..+|+...+. --|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 887654 57888888888888888888888888888865 688888888777778888888888888887653 112
Q ss_pred cch----HHHHHHHhcCCcchhhHHHHHHHHHHcCCCCC-hhHHhHHhhhhhcCCCHHHHHHH--------HHhcCCC--
Q 039792 360 DFA----CSSVLTSCGSVEALEQGRQVHAYSFKANIESD-NFVKNSLVDMYAKCDSLTEARKV--------FDVMADR-- 424 (819)
Q Consensus 360 ~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~-- 424 (819)
... |++....=.+....+.|.-++..++..-.... ...|..+...=-+.|+....... ++.+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 222 22222223345566777777777666432221 23344444333333433222221 1111111
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHH
Q 039792 425 -NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLL-TFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSAL 502 (819)
Q Consensus 425 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 502 (819)
|-.+|-..+..-...|+.+...++|++.... ++|-.. .| + ...+|--+
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~-------------------W----------~RYIYLWi 369 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRY-------------------W----------RRYIYLWI 369 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHH-------------------H----------HHHHHHHH
Confidence 2334444444444455555555555555432 333110 00 0 00011101
Q ss_pred ---HHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHH----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039792 503 ---IDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLG----YTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAA 572 (819)
Q Consensus 503 ---i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 572 (819)
+-.-....+++.+.++|+...+ | ...||.-+--. -.++.+...|.+++-..+ |.-|-..+|...|..-
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelE 447 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELE 447 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHH
Confidence 1111234566666777765554 2 23344433222 345677888888877655 5678889999999988
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCC----hHhHHHHHHHHHhCCChHHH
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-WKD----VACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A 647 (819)
.+.+.++.+..+++..+..++. +..+|.-....-...|+.+.|..+|+-.. +|. ...|.+.|.--...|.+++|
T Consensus 448 lqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH
Confidence 9999999999999999998876 78888888888889999999999998665 442 34788888888888999999
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHH
Q 039792 648 LLLFREMIIEGLEPNYITFVGVLS 671 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~~~t~~~ll~ 671 (819)
..+++++++ ..+....|.+...
T Consensus 527 R~LYerlL~--rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 527 RALYERLLD--RTQHVKVWISFAK 548 (677)
T ss_pred HHHHHHHHH--hcccchHHHhHHH
Confidence 999999988 3344444544443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.4e-10 Score=117.03 Aligned_cols=272 Identities=15% Similarity=0.070 Sum_probs=136.2
Q ss_pred CHHHHHHHHHhcCC--CCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCChhHHHHHHHHhhccCchHhHHHHH
Q 039792 410 SLTEARKVFDVMAD--RNVV-SYNAMIEGYSKEEKLSEALDLFHEMRVGF--VPPGLLTFVSLLGLSSSVFSLESSKQIH 484 (819)
Q Consensus 410 ~~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 484 (819)
+..+|...|.+.++ .|+. ....+..+|...+++++|.++|+..++.. ..-+..+|.+.|-.+-+.- .--.+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v---~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV---ALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH---HHHHHH
Confidence 34566666666443 2333 22334456666666666666666665431 1123344444443221110 000111
Q ss_pred HHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCC---CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCC-
Q 039792 485 GLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQR---DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRP- 560 (819)
Q Consensus 485 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 560 (819)
..+++. -+-.+.+|.++.+.|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 411 q~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 411 QDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 111111 1224555666666666666666666666655542 234444444445555556666666655442 112
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHH
Q 039792 561 NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICT 637 (819)
Q Consensus 561 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 637 (819)
+-..|..+...|.+.++++.|+-.|+.+.+.++. +.++...+...+.+.|+.++|+.++++.. .+|+.+---.+..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 1233444445555666666666666666555544 45555555556666666666666665543 3444444444555
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
+...+++++|+..++++++ +.|+. ..|..+...|.+.|+.+.|+.-|.-|.
T Consensus 567 l~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 5555666666666666655 55554 334445555666666555555554443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-09 Score=116.07 Aligned_cols=130 Identities=10% Similarity=-0.066 Sum_probs=74.6
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhH---HHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITF---VGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYA 702 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~ 702 (819)
++..+..+...+...|+.++|.+++++..+ ..||.... ..........++.+.+.+.+++..+ ....|+.....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 555666666666666666666666666665 34544321 1111122334556666666666555 33333211112
Q ss_pred HHHHHhhcccchhhhHHHHHH--HHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 703 SVVSLLGRNVWNVELGRYAAE--MAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 703 ~li~~l~r~~w~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
++..++-+.+ +.+.|+..++ ++++..|++. .+..|+.++.+.|+.++|.+++++-.
T Consensus 340 sLg~l~~~~~-~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 340 ALGQLLMKHG-EFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHcc-cHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222222222 5566666667 4666677544 46699999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-09 Score=114.98 Aligned_cols=287 Identities=11% Similarity=0.012 Sum_probs=169.1
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCcchH-HHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHH
Q 039792 337 QNSFDREAMKLFTEMTRSGWKPDDFAC-SSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEAR 415 (819)
Q Consensus 337 ~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 415 (819)
..|+++.|.+.+.+..+. .|+...+ .....+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 345566666655554432 2332222 2222334455555666655555544332222223333456666677777777
Q ss_pred HHHHhcCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCC
Q 039792 416 KVFDVMAD--R-NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGV 492 (819)
Q Consensus 416 ~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 492 (819)
..++.+.+ | +...+..+...+.+.|++++|.+.+..+.+.++.+.......-..
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~----------------------- 230 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQK----------------------- 230 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----------------------
Confidence 77777654 2 444566777777778888888888777776654322211110000
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---H
Q 039792 493 FLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTF---A 566 (819)
Q Consensus 493 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~ 566 (819)
.+..++..-......+...+.++..++ .++..+..+...+...|+.++|.+++++..+. .||.... .
T Consensus 231 -----a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 231 -----AEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred -----HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 011111111112223344444544443 35666777777888888888888888888775 3443321 1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhc--CC--CCChHhHHHHHHHHHh
Q 039792 567 ALITAASNLGSLKHGQQFHNHLIKLGLDFDS--FITSALIDMYAKCGSLEDAYETFGS--TT--WKDVACWNSMICTNAH 640 (819)
Q Consensus 567 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~--~~--~~~~~~~~~li~~~~~ 640 (819)
...-.....++.+.+.+.++...+..+. |+ ....++...+.+.|++++|.+.|+. .. .||...+..+...+.+
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111223346777788888877776544 55 6677888888999999999999983 42 6787778888888999
Q ss_pred CCChHHHHHHHHHHHH
Q 039792 641 HGEPMKALLLFREMII 656 (819)
Q Consensus 641 ~g~~~~A~~~~~~m~~ 656 (819)
.|+.++|.+++++...
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999998888654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-08 Score=102.62 Aligned_cols=265 Identities=10% Similarity=0.012 Sum_probs=194.3
Q ss_pred CccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCC---eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039792 492 VFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRD---IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAAL 568 (819)
Q Consensus 492 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 568 (819)
..-++.+.....+-+...+++.+..++++...+.| ...+..-|.++...|+..+-+.+=.+|.+. .+-.+.+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 33455566666777778888999999888887644 345555567788888888888777788775 45566788888
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChH
Q 039792 569 ITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPM 645 (819)
Q Consensus 569 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 645 (819)
.--|...|+.++|++++......+.. -...|-.+...|+-.|.-+.|...+.... +.....+--+..-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 87777889999999999888765544 34567788888888888888887665433 111112223445677788899
Q ss_pred HHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh--cCCccCchHHHHHHHHhhcc---cchhhhHH
Q 039792 646 KALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG--FGIEPGMEHYASVVSLLGRN---VWNVELGR 719 (819)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~--~g~~p~~~~y~~li~~l~r~---~w~~~~a~ 719 (819)
.|.+.|.+... +.|+. ...+-+.-...+.+.+.+|..+|+..+. ..+.+....|..+...+|.. .-..+.|.
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999988876 88865 5566666666678889999999988875 34444444566666666543 12677888
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 720 YAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 720 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
..+++++.+.|.++.+|..++-+|...|+.+.|...+.+..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 88999999999999999999999999999999998888664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.6e-07 Score=91.87 Aligned_cols=428 Identities=10% Similarity=0.064 Sum_probs=255.2
Q ss_pred CCChHHHHHHHhccc---CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch-HHHHHHHhcCCcchhhHHHH
Q 039792 307 CGRVKMARRLFDEIE---VKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFA-CSSVLTSCGSVEALEQGRQV 382 (819)
Q Consensus 307 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~ 382 (819)
.+++..|..+|++.. .+++..|--.+..=.++..+..|..++++... +-|...- +---+-.=-..|++..|+++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 445555666666544 23445555555555666666666666666554 2332211 11111111234666666666
Q ss_pred HHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC-C-CC
Q 039792 383 HAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMA--DRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVG-F-VP 458 (819)
Q Consensus 383 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~ 458 (819)
|+.-.+ ..|+...+++.|+.=.+-..++.|+.++++.. .|++.+|--...--.++|....|..+|....+. | -.
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 665554 45667777777777777777777777776643 466666666666666677776666666665432 1 01
Q ss_pred CChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCcc-chhhHHHHHHHHHhcCChHHHHHH--------HHhcCCC---C
Q 039792 459 PGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFL-DVFAGSALIDAYSKCFSNKDARLV--------FDEMNQR---D 526 (819)
Q Consensus 459 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~---~ 526 (819)
-+...|.+...-=.....++.+.-++...++.-... ....|......--+-|+....... ++.+... |
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 111223333333334556777777777776654332 234444444444444554333222 2222222 4
Q ss_pred eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHH---HHHHhccCChHHHHHHHHHHHHhCCCCc
Q 039792 527 IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEF-------TFAAL---ITAASNLGSLKHGQQFHNHLIKLGLDFD 596 (819)
Q Consensus 527 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~~ 596 (819)
-.+|--.++.--..|+.+...++|++.+.. ++|-.. .|.-+ +-.-....+.+.+.++++..++. ++..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 456666777777788999999999988865 555321 11111 11124567888899999888873 2223
Q ss_pred hhHHHHH----HHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHH
Q 039792 597 SFITSAL----IDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGV 669 (819)
Q Consensus 597 ~~~~~~l----i~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 669 (819)
..++.-+ ...-.++.++..|.+++.... .|...++...|..-.+.++++....++++.++ ..|. ..+|...
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKY 477 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHH
Confidence 4444433 333457788999999988766 66677788888888888999999999999988 7774 4678888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcC-CccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHH
Q 039792 670 LSACSHAGLIEDGLDHFQSMAGFG-IEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFA 744 (819)
Q Consensus 670 l~a~~~~g~~~~a~~~~~~m~~~g-~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 744 (819)
...=...|+.|.|..+|.-.+..+ +..-...+-.-||.=-..+ .++.++..++++++..+.. .+|+..+.--+
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~-E~ekaR~LYerlL~rt~h~-kvWisFA~fe~ 551 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEG-EFEKARALYERLLDRTQHV-KVWISFAKFEA 551 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcc-hHHHHHHHHHHHHHhcccc-hHHHhHHHHhc
Confidence 887888899999999998887622 2111222333332221111 6778888888888877643 37777776655
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-11 Score=86.46 Aligned_cols=50 Identities=26% Similarity=0.576 Sum_probs=47.5
Q ss_pred CCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 039792 222 KTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSM 271 (819)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 271 (819)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-11 Score=85.49 Aligned_cols=50 Identities=28% Similarity=0.470 Sum_probs=46.1
Q ss_pred CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc
Q 039792 626 KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH 675 (819)
Q Consensus 626 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 675 (819)
||+++||++|.+|+++|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-08 Score=97.53 Aligned_cols=290 Identities=13% Similarity=0.090 Sum_probs=178.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHH
Q 039792 338 NSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKV 417 (819)
Q Consensus 338 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 417 (819)
.|++..|.++..+-.+.+-.| ...|..-..+....|+.+.+-..+.++.+.--.++..++-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555544433222 1223333344455566666666666555543344555555666666777777777766
Q ss_pred HHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCcc
Q 039792 418 FDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFL 494 (819)
Q Consensus 418 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 494 (819)
.++..+ .+.........+|.+.|++.+...++.+|.+.|.-.|+..- ++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH-----------
Confidence 665443 56677778888888888888888888888887765443211 00
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA 571 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 571 (819)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+-.+++..|+. ..+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHh
Confidence 122334444444444444444445555543 34555556667777788888888888887777666662 22234
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHH
Q 039792 572 ASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALL 649 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 649 (819)
+.+.++.+.-.+..+...+..+. ++..+.+|...|.+.+.+.+|.+.|+... .|+...|+.+..++.+.|+.++|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 56677777777766666655433 55677777777777777777777777655 5667777777777777777777777
Q ss_pred HHHHHHHcCCCC
Q 039792 650 LFREMIIEGLEP 661 (819)
Q Consensus 650 ~~~~m~~~g~~p 661 (819)
.+++.+..-..|
T Consensus 383 ~r~e~L~~~~~~ 394 (400)
T COG3071 383 VRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHhcCC
Confidence 777665433333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.7e-08 Score=97.11 Aligned_cols=187 Identities=13% Similarity=0.118 Sum_probs=118.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 039792 499 GSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRP-NEFTFAALITAASN 574 (819)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 574 (819)
|--+..+|....+.++.+..|+...+ .|+.+|..-...+.-.+++++|..=|++.++. .| +...|..+--+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHH
Confidence 33344455555555556666655543 24445554455555556666777767666652 33 33444444444456
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCC-------hH--hHHHHHHHHHhCCC
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKD-------VA--CWNSMICTNAHHGE 643 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-------~~--~~~~li~~~~~~g~ 643 (819)
.+.++++...|+..++.- +..+.+|+.....+...+++++|.+.|+... .|+ .. .-..++..- -.++
T Consensus 441 ~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhh
Confidence 667777777777776653 3366777777777777777777777777554 222 11 111222111 2388
Q ss_pred hHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 644 PMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 644 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+.+|++++.+..+ +.|- ...|.+|...-.+.|+.++|+++|++-..
T Consensus 519 ~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 519 INQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8999999999988 7885 46899999999999999999999988766
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-06 Score=92.14 Aligned_cols=368 Identities=15% Similarity=0.077 Sum_probs=245.0
Q ss_pred cCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHH
Q 039792 389 ANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPG-LLTF 464 (819)
Q Consensus 389 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 464 (819)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+...|...|.-..|..++++-....-.|+ ...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567888999999999999999999999998764 3456899999999999999999999998754433344 4444
Q ss_pred HHHHHHhh-ccCchHhHHHHHHHHHHh--CC--ccchhhHHHHHHHHHhc-----------CChHHHHHHHHhcCCCCee
Q 039792 465 VSLLGLSS-SVFSLESSKQIHGLIIKY--GV--FLDVFAGSALIDAYSKC-----------FSNKDARLVFDEMNQRDIV 528 (819)
Q Consensus 465 ~~ll~~~~-~~~~~~~a~~i~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 528 (819)
...-..|. +.+..+++..+-..+++. +. ......|-.+.-+|... ....++...+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44445554 456777777777766652 11 12344444444444322 1234566677776543222
Q ss_pred ehhh---hHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh-CCC----------
Q 039792 529 VWNA---MLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL-GLD---------- 594 (819)
Q Consensus 529 ~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~---------- 594 (819)
-++. +.--|+..++.+.|++..++..+-+-.-+...|..+.-.++..+++.+|+.+.+..... |..
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 2222 33347777889999999999988766778888888888888889999999888776642 210
Q ss_pred --------CchhHHHHHHHHHHh------cCCHHHHHHHHhc----------------------------------CC--
Q 039792 595 --------FDSFITSALIDMYAK------CGSLEDAYETFGS----------------------------------TT-- 624 (819)
Q Consensus 595 --------~~~~~~~~li~~~~~------~g~~~~A~~~~~~----------------------------------~~-- 624 (819)
-...+...++...-. .|+-....+.+.. ++
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 011122222222210 0000011111110 01
Q ss_pred ----CCC------hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh--
Q 039792 625 ----WKD------VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG-- 691 (819)
Q Consensus 625 ----~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~-- 691 (819)
.|+ ...|......+...++.++|...+.+..+ +.|-. ..|......+...|.+++|.+.|.....
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 111 12455666778888999999988888876 66754 4566666788889999999999988876
Q ss_pred cCCccCchHHHHHHHHhhcccchhhhHHH--HHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 692 FGIEPGMEHYASVVSLLGRNVWNVELGRY--AAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 692 ~g~~p~~~~y~~li~~l~r~~w~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.+..|.....+-++.-.| +-..+.. +...+++++|.|+.+|..|+.++-+.|+.++|.+-|+...+.
T Consensus 715 P~hv~s~~Ala~~lle~G----~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELG----SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCCcHHHHHHHHHHHHhC----CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 233333333333444444 3344444 899999999999999999999999999999999999987654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.1e-06 Score=85.22 Aligned_cols=538 Identities=12% Similarity=0.085 Sum_probs=287.9
Q ss_pred hhhHHHHHhccCCCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhHHHHHH
Q 039792 103 LDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHS 182 (819)
Q Consensus 103 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 182 (819)
++.+..+..+|| ..|-.-+.-+..+|+...-...|...++.-.+.-....+.-.++.....+-++.+....+..
T Consensus 91 ~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRY-- 164 (835)
T KOG2047|consen 91 FERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRY-- 164 (835)
T ss_pred HHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHH--
Confidence 345555556665 35666666677788888888888777666666666666766666666665554222222222
Q ss_pred HHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCC----------CeeeHHHHHHHHHhcCCchh---HHHHHHH
Q 039792 183 FVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVK----------TAVSWTTIITGYVKSGRSDL---SLNLFNQ 249 (819)
Q Consensus 183 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~----------~~~~~~~li~~~~~~g~~~~---A~~~~~~ 249 (819)
+..++..-+--|..+++.+++++|.+.+...... +--.|.-+-...+++.+.-. ...+++.
T Consensus 165 ------Lk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~ 238 (835)
T KOG2047|consen 165 ------LKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRG 238 (835)
T ss_pred ------HhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHh
Confidence 2334444666777777788888887777665322 22345555444444433222 2222222
Q ss_pred HHHCCCCCChh--hHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHH-hc--c-cCC
Q 039792 250 MRETDVVHDKY--LLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLF-DE--I-EVK 323 (819)
Q Consensus 250 m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~--~-~~~ 323 (819)
+.. .-+|.. .|.+|.+-|.+.|.++.|+.++++.+..-. ++.-++.+.++|+....-.-+..+= .. - .+.
T Consensus 239 gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~e 314 (835)
T KOG2047|consen 239 GIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEE 314 (835)
T ss_pred hcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChh
Confidence 221 223322 345555555555555555555555544321 2222333334443221111000000 00 0 000
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCC--------CCCCcchHHHHHHH-hcCCcchhhHHHHHHHHHHcCCCC-
Q 039792 324 NIISWTTLIGGYMQNSFDREAMKLFTEMTRSG--------WKPDDFACSSVLTS-CGSVEALEQGRQVHAYSFKANIES- 393 (819)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~- 393 (819)
+.. +++-.+.-|+.+...+ +..|+......++- -...|+..+-...+.++++. +.|
T Consensus 315 d~~-------------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ 380 (835)
T KOG2047|consen 315 DDV-------------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPK 380 (835)
T ss_pred hhh-------------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcc
Confidence 111 1222333344443321 01111111111111 12234455555666666653 222
Q ss_pred -----ChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcc-------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 039792 394 -----DNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVV-------SYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGL 461 (819)
Q Consensus 394 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 461 (819)
-...+..+.+.|-..|+++.|+.+|++..+-+-. .|-.-...-.++.+++.|+++.+... ..|..
T Consensus 381 ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~---~vP~~ 457 (835)
T KOG2047|consen 381 KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT---HVPTN 457 (835)
T ss_pred cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh---cCCCc
Confidence 2346778889999999999999999998764332 34444455556777788888766653 23322
Q ss_pred hHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHH---HH
Q 039792 462 LTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLG---YT 538 (819)
Q Consensus 462 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~~ 538 (819)
.. +.. ...+...++ .+| -+..+|+..++.--..|-++....+++++.+--+.|=..+++- +-
T Consensus 458 ~~----~~~-yd~~~pvQ~-rlh---------rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE 522 (835)
T KOG2047|consen 458 PE----LEY-YDNSEPVQA-RLH---------RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE 522 (835)
T ss_pred hh----hhh-hcCCCcHHH-HHH---------HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11 111 111111111 111 1445566666777777888888888888876444433333322 33
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh---ccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCC
Q 039792 539 QQLENEEAIKLYLELLLSQQRPNE-FTFAALITAAS---NLGSLKHGQQFHNHLIKLGLDFDSF--ITSALIDMYAKCGS 612 (819)
Q Consensus 539 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~ 612 (819)
.+.-++++.++|++-+..--.|+. ..|+..+.-+. ....++.|+.+|++.++ |.+|.-. +|-.....-.+-|-
T Consensus 523 eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GL 601 (835)
T KOG2047|consen 523 EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGL 601 (835)
T ss_pred hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhH
Confidence 455678888888765543223554 23444444432 23478999999999998 4444322 12222233345688
Q ss_pred HHHHHHHHhcCCCC-----ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHH---HHHHccCCHHHHHH
Q 039792 613 LEDAYETFGSTTWK-----DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVL---SACSHAGLIEDGLD 684 (819)
Q Consensus 613 ~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~a~~~~g~~~~a~~ 684 (819)
...|..++++.... -...||..|.--+..=-+.....+|++.++ .-||...-...+ ..=++.|.++.|..
T Consensus 602 ar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARa 679 (835)
T KOG2047|consen 602 ARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARA 679 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 88899999887622 234788887655544445556778888888 578765433333 34567899999998
Q ss_pred HHHHHHh
Q 039792 685 HFQSMAG 691 (819)
Q Consensus 685 ~~~~m~~ 691 (819)
++..-.+
T Consensus 680 Iya~~sq 686 (835)
T KOG2047|consen 680 IYAHGSQ 686 (835)
T ss_pred HHHhhhh
Confidence 8877665
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.5e-08 Score=91.56 Aligned_cols=222 Identities=14% Similarity=0.088 Sum_probs=125.0
Q ss_pred CCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCC-C--hhHHhHHhhhhhcCCCHHH
Q 039792 338 NSFDREAMKLFTEMTRSGWKP-DDFACSSVLTSCGSVEALEQGRQVHAYSFKANIES-D--NFVKNSLVDMYAKCDSLTE 413 (819)
Q Consensus 338 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~~~g~~~~ 413 (819)
..+.++|.++|-+|.+. .| +..+-.++-+-+-+.|..+.|..+|..+.++---+ + ....-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 35666777777776652 22 12222344445556666666666666655432111 1 1233456667778888888
Q ss_pred HHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHh
Q 039792 414 ARKVFDVMADRNV---VSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY 490 (819)
Q Consensus 414 A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 490 (819)
|+.+|..+.+.+. .....|+..|.+..+|++|++.-+++.+.+-.+..+-.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 8888888776332 35566778888888888888888877665443322111
Q ss_pred CCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCe---eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039792 491 GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDI---VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAA 567 (819)
Q Consensus 491 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 567 (819)
...|.-|...+.-..+++.|..++.+..+.|. ..--.+.+.+...|+++.|.+.++...+++..--..+...
T Consensus 180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 12233344444445556666666665544222 1222233445666666666666666666543333445555
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhC
Q 039792 568 LITAASNLGSLKHGQQFHNHLIKLG 592 (819)
Q Consensus 568 ll~~~~~~g~~~~a~~~~~~~~~~~ 592 (819)
|..+|...|+.+++..++..+.+..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 6666666666666666666665543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.8e-05 Score=83.08 Aligned_cols=552 Identities=13% Similarity=0.110 Sum_probs=303.9
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCC--CCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCC
Q 039792 179 QMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMV--KTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVV 256 (819)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 256 (819)
.+.-...+-|..||.. .++....+ -.++.+.++...+++ +.....+.+...+........+..++-...+. -.
T Consensus 499 KiilY~kKvGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~-~~ 573 (1666)
T KOG0985|consen 499 KIILYAKKVGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKL-NS 573 (1666)
T ss_pred HHHHHHHHcCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcC-CC
Confidence 4444556778888854 34555545 578888887777754 34456777777777777777777766665543 34
Q ss_pred CChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccC--CCcccHH----H
Q 039792 257 HDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV--KNIISWT----T 330 (819)
Q Consensus 257 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~----~ 330 (819)
|+....-+-+--....+ |-++-+.++-.+.- +..-+..+...+.+.|-...|++.+..+.. +.++.-+ -
T Consensus 574 Pd~g~LQTrLLE~NL~~----aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pE 648 (1666)
T KOG0985|consen 574 PDEGHLQTRLLEMNLVH----APQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPE 648 (1666)
T ss_pred hhhhhHHHHHHHHHhcc----chHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHH
Confidence 55443332222111112 22333333322221 222367778888899999999988887752 2221111 1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHH-----------cCCCCChhHHh
Q 039792 331 LIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFK-----------ANIESDNFVKN 399 (819)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~ 399 (819)
.+-.|.-.-.++++++.++.|...+++.|..+...+..-|...-..+...++|+.... .++.-|+.+.-
T Consensus 649 wLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~ 728 (1666)
T KOG0985|consen 649 WLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHF 728 (1666)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHH
Confidence 1234455566788999999999888888877776666655544444444455444322 12445566666
Q ss_pred HHhhhhhcCCCHHHHHHHHHhcCC-------------------C------------CcchH------HHHHHHHHhc---
Q 039792 400 SLVDMYAKCDSLTEARKVFDVMAD-------------------R------------NVVSY------NAMIEGYSKE--- 439 (819)
Q Consensus 400 ~li~~~~~~g~~~~A~~~~~~m~~-------------------~------------~~~~~------~~li~~~~~~--- 439 (819)
-.|.+.++.|++.+.+++-++-.- | |.+.| -..|..|.+.
T Consensus 729 KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNp 808 (1666)
T KOG0985|consen 729 KYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNP 808 (1666)
T ss_pred HHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 778888888888887777543221 0 11111 0122233222
Q ss_pred -------------------------------------------CChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCc
Q 039792 440 -------------------------------------------EKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFS 476 (819)
Q Consensus 440 -------------------------------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 476 (819)
++..--+..++.....|. .|..|++.+...|..+++
T Consensus 809 s~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNN 887 (1666)
T KOG0985|consen 809 SRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNN 887 (1666)
T ss_pred cccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCC
Confidence 222222333333444443 356667766666654432
Q ss_pred hHh-HH---------HHHHHHHHhCCcc----------c---------hhhHHHHHHHHHhcCChHHH-----------H
Q 039792 477 LES-SK---------QIHGLIIKYGVFL----------D---------VFAGSALIDAYSKCFSNKDA-----------R 516 (819)
Q Consensus 477 ~~~-a~---------~i~~~~~~~g~~~----------~---------~~~~~~li~~~~~~g~~~~A-----------~ 516 (819)
-.+ -. .+=....++.... | -..|......+.+..+.+-= +
T Consensus 888 nPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rR 967 (1666)
T KOG0985|consen 888 NPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRR 967 (1666)
T ss_pred ChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHH
Confidence 211 10 0000011110000 0 11111122222222222211 1
Q ss_pred HHHHhcCC------CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCC-----------------CCCCHHHHHH------
Q 039792 517 LVFDEMNQ------RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQ-----------------QRPNEFTFAA------ 567 (819)
Q Consensus 517 ~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------------~~p~~~t~~~------ 567 (819)
.+.+...+ .|+.--..-+.++...+-+.+-++++++..-.. ++.|..-...
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLd 1047 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLD 1047 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhc
Confidence 22222221 345555556777777777777777777765221 1111111111
Q ss_pred ------HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhC
Q 039792 568 ------LITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHH 641 (819)
Q Consensus 568 ------ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 641 (819)
+...+...+-+++|..+|+.. ..+....+.||+ ..+.++.|.++-++...|. .|..+..+-.+.
T Consensus 1048 nyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p~--vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1048 NYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQG 1117 (1666)
T ss_pred cCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCChH--HHHHHHHHHHhc
Confidence 123455566778888887653 334445555554 4577888888888876654 589999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccc--------
Q 039792 642 GEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW-------- 713 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w-------- 713 (819)
|...+|++-|-+. -|...|.-++.++.+.|.|++-.+++....+..-+|.++ +.++-+|++..-
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 9999998876332 245679999999999999999999988777777777765 356666665411
Q ss_pred ---hhhhHHHHHHHHH--------ccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 714 ---NVELGRYAAEMAI--------SIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 714 ---~~~~a~~~~~~~~--------~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
|...-..+..+.+ ++--.+.+.|..|+..+...|++..|..--++.
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1111111111111 112234566777888888888888877665544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-08 Score=98.14 Aligned_cols=193 Identities=15% Similarity=0.098 Sum_probs=104.2
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYA 608 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 608 (819)
.+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...++...+..+. +...+..+...|.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 44555555666666666666666655431 223344444555555555555555555555554332 3334444444555
Q ss_pred hcCCHHHHHHHHhcCCC-----CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHH
Q 039792 609 KCGSLEDAYETFGSTTW-----KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 609 ~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 682 (819)
..|++++|.+.|++... .....|..+...+...|++++|.+.+++..+ ..|+. ..+..+...+...|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~----- 183 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRG----- 183 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcC-----
Confidence 55555555555444331 1122333344444444444444444444444 23322 23333333444444
Q ss_pred HHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 683 LDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 683 ~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.|...++++++..|.++..+..++.++...|++++|..+.+.+.+
T Consensus 184 -------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 184 -------------------------------QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred -------------------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 445555555555566677777888888999999999999998887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-08 Score=101.23 Aligned_cols=217 Identities=13% Similarity=-0.026 Sum_probs=155.0
Q ss_pred CCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 039792 541 LENEEAIKLYLELLLSQ-QRPN--EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAY 617 (819)
Q Consensus 541 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 617 (819)
+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...++..++..+. +...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 45577777777777532 2232 344666667788889999999999999887765 6788999999999999999999
Q ss_pred HHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 039792 618 ETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGI 694 (819)
Q Consensus 618 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 694 (819)
+.|++.. +.+..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|.+.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 9998876 33567888888999999999999999999998 6787653222233345678899999999776542 2
Q ss_pred ccCchHHHHHHHHhhcccchhhhHHHHH----HHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 695 EPGMEHYASVVSLLGRNVWNVELGRYAA----EMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 695 ~p~~~~y~~li~~l~r~~w~~~~a~~~~----~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
.|+...+....-.+|+. +.+.+...+ +...++.|+.+.+|..|+.+|...|++++|...+++..+..
T Consensus 196 ~~~~~~~~~~~~~lg~~--~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGWNIVEFYLGKI--SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHHHHHHHHccCC--CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33333333222233432 222222122 22335667778899999999999999999999999887644
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-07 Score=94.15 Aligned_cols=268 Identities=13% Similarity=0.096 Sum_probs=190.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHh
Q 039792 429 YNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSK 508 (819)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 508 (819)
.-.-.+-+...+++.+..++++...+. .++....+..=|..+...|+...-..+-..+++.- +..+.+|-++.-.|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 333444555666777777777776543 23333444444445556666555555555555443 2356677777777778
Q ss_pred cCChHHHHHHHHhcCCCC---eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 039792 509 CFSNKDARLVFDEMNQRD---IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFH 585 (819)
Q Consensus 509 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 585 (819)
.|+..+|++.|.+...-| ...|-....+|+-.|..++|+..+...-+--.. ...-+--+---|.+.++++.|.+++
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHH
Confidence 899999999998876533 357888899999999999999988776543111 1111223334577889999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC------C----ChHhHHHHHHHHHhCCChHHHHHHHHHHH
Q 039792 586 NHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW------K----DVACWNSMICTNAHHGEPMKALLLFREMI 655 (819)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 655 (819)
.+.....+. |+.+.+-+.-+.-..+.+.+|...|+.... + =..+|+.|...|.+.+.+++|+..|++.+
T Consensus 404 ~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 404 KQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 999887654 888888888888888899999999976551 1 12357888899999999999999999998
Q ss_pred HcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHH
Q 039792 656 IEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASV 704 (819)
Q Consensus 656 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~l 704 (819)
. ..| |..|+.++.-.|...|+++.|.+.|++.. .+.|+...-..+
T Consensus 483 ~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~l 528 (611)
T KOG1173|consen 483 L--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISEL 528 (611)
T ss_pred H--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHH
Confidence 8 677 45688888889999999999999999876 466775444333
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-07 Score=91.96 Aligned_cols=248 Identities=11% Similarity=0.064 Sum_probs=127.4
Q ss_pred hccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHH
Q 039792 472 SSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIK 548 (819)
Q Consensus 472 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 548 (819)
-..|+.+.+.+.+.++.+..-.++..++-+........|+.+.|..-.++..+ .++........+|.+.|++.+.+.
T Consensus 129 ~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~ 208 (400)
T COG3071 129 QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLA 208 (400)
T ss_pred HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHH
Confidence 33334444444443333333333333334444444444444444444443322 234444555555666666666666
Q ss_pred HHHHHHHCCCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 039792 549 LYLELLLSQQRPNE-------FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFG 621 (819)
Q Consensus 549 ~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 621 (819)
++.+|.+.|+--|+ .++..+++-+...+..+.-...++...+. .+.++....+++.-+.+||+.++|.++.+
T Consensus 209 ~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 209 ILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 66666655543332 34566666665555555555555544332 23345555666666666666666666665
Q ss_pred cCCCC--ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCc
Q 039792 622 STTWK--DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGM 698 (819)
Q Consensus 622 ~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 698 (819)
...++ |.. -...-.+.+-++.+.-++..++-.+ -.|+ ...+.+|...|.+.+.|.+|.++|+...+ ..|+.
T Consensus 288 ~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~--~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~ 361 (400)
T COG3071 288 DALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLK--QHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSA 361 (400)
T ss_pred HHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHH--hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCCh
Confidence 54422 222 1122233445555555555555544 2332 24566666666666666666666664443 44666
Q ss_pred hHHHHHHHHhhcccchhhhHHHHHHHHHc
Q 039792 699 EHYASVVSLLGRNVWNVELGRYAAEMAIS 727 (819)
Q Consensus 699 ~~y~~li~~l~r~~w~~~~a~~~~~~~~~ 727 (819)
.+|+.+.+.+.+.+ +.+.|.+..+.++-
T Consensus 362 ~~~~~la~~~~~~g-~~~~A~~~r~e~L~ 389 (400)
T COG3071 362 SDYAELADALDQLG-EPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence 66666666665554 55666665555553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.3e-05 Score=82.37 Aligned_cols=200 Identities=19% Similarity=0.172 Sum_probs=129.8
Q ss_pred CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 039792 526 DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALID 605 (819)
Q Consensus 526 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 605 (819)
.+..|..+..+-.+.|...+|++-|-+ .-|+..|.-+++.+.+.|.+++-..++....+..-+|. +-+.||-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHH
Confidence 345789999999999999999887754 24677899999999999999999999999888776654 4467999
Q ss_pred HHHhcCCHHHHHHHHhcCCC-----------------------CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 606 MYAKCGSLEDAYETFGSTTW-----------------------KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
+|++.+++.+-++++..-.. .++.-|.-|...+...|+++.|...-++. -+
T Consensus 1175 AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred HHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 99999999988877642110 12233444555555556665555543332 23
Q ss_pred chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHH
Q 039792 663 YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 663 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 742 (819)
..||..+..+|...+.+.-| +|....+.-..+-..-++..|...+ -.+.-....|.++.++.-+-+.+.-|+-+
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rG-yFeElIsl~Ea~LGLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRG-YFEELISLLEAGLGLERAHMGMFTELAIL 1322 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcC-cHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence 46888888888877655433 2222222223333444455454332 33444455566666666566666667666
Q ss_pred HHh
Q 039792 743 FAC 745 (819)
Q Consensus 743 y~~ 745 (819)
|++
T Consensus 1323 Ysk 1325 (1666)
T KOG0985|consen 1323 YSK 1325 (1666)
T ss_pred HHh
Confidence 654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-08 Score=95.75 Aligned_cols=227 Identities=15% Similarity=0.091 Sum_probs=172.7
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 039792 531 NAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC 610 (819)
Q Consensus 531 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 610 (819)
+.|..+|.+.|.+.+|.+.|+.-..+ .|-..||..|-.+|.+....+.|..++.+-.+.-+ .|+....-....+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHH
Confidence 45677777888888888777776664 45666777777788888888888888777766532 3555555667777777
Q ss_pred CCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHH
Q 039792 611 GSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQ 687 (819)
Q Consensus 611 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 687 (819)
++.++|.++++... ..++.+.-++..+|...++++-|+..|.++++.|+. +...|..+.-+|...+.+|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 88888888888766 345556667778899999999999999999998864 56778999999999999999999999
Q ss_pred HHHhcCCccCc--hHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 688 SMAGFGIEPGM--EHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 688 ~m~~~g~~p~~--~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+...---.|+. +.|-.+-...-. +-|+..|.+.++.++.-+|++.++|+.|+-+-.+.|+.++|..++......
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~-iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVT-IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEe-ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88873333432 112111111100 018899999999999999999999999999999999999999999988763
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-08 Score=97.43 Aligned_cols=194 Identities=13% Similarity=-0.032 Sum_probs=157.9
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA 571 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 571 (819)
....+..+...|...|++++|...|++..+ | +...+..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677788889999999999999998764 2 35577778888999999999999999988753 3455677788888
Q ss_pred HhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHH
Q 039792 572 ASNLGSLKHGQQFHNHLIKLGLD-FDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 647 (819)
+...|++++|...+..+.+.... .....+..+...|.+.|++++|...|++.. +.+...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999999875322 244567778889999999999999998766 33566888899999999999999
Q ss_pred HHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 648 LLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
...+++..+. .|+ ...+..+...+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999884 454 45667777888899999999999887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.5e-08 Score=108.35 Aligned_cols=244 Identities=13% Similarity=-0.046 Sum_probs=146.1
Q ss_pred CChHHHHHHHHhcCCCC---eeehhhhHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 039792 510 FSNKDARLVFDEMNQRD---IVVWNAMLLGYTQQ---------LENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGS 577 (819)
Q Consensus 510 g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 577 (819)
+..++|...|++..+.| ...|..+..+|... +++++|...+++..+.. +-+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 34567777787776532 23454454444322 33677777777777642 2245556666666677778
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCh-HhHHHHHHHHHhCCChHHHHHHHHHH
Q 039792 578 LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDV-ACWNSMICTNAHHGEPMKALLLFREM 654 (819)
Q Consensus 578 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 654 (819)
+++|...++++++.++. +...+..+...|...|++++|...+++.. .|+. ..+..++..+...|++++|+..+++.
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 88888888877777654 55666777777777888888887777765 3332 23333444455677777788877777
Q ss_pred HHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCc-hHHHHHHHHhhcccchhhhHHHHHHHHHccCCCC
Q 039792 655 IIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGM-EHYASVVSLLGRNVWNVELGRYAAEMAISIDPMD 732 (819)
Q Consensus 655 ~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~ 732 (819)
.+.. .|+.. .+..+..++...|+.++|...+.++... .|+. ...+.+...|.+. -+.+...++++++..-..
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN---SERALPTIREFLESEQRI 506 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhhHh
Confidence 6532 35443 3555566677778888888777765431 2222 2223333333332 135555566666554444
Q ss_pred chhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 733 SGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 733 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 44444477777777777777766 555544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9e-06 Score=84.63 Aligned_cols=367 Identities=10% Similarity=0.080 Sum_probs=196.1
Q ss_pred hCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHhcCCcchhhHHHHHH
Q 039792 306 KCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKP-DDFACSSVLTSCGSVEALEQGRQVHA 384 (819)
Q Consensus 306 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~ 384 (819)
+.++.|+|...++.....+..+...-...+.+.|++++|+++|+.+.+++..- |..--..++.+-.. ... .
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-H
Confidence 56778888888775555554455555666777888888888888886654322 11111111111100 000 0
Q ss_pred HHHHcCCCCChhHHhH---HhhhhhcCCCHHHHHHHHHhc--------CCCCc----------chHHHHHHHHHhcCChh
Q 039792 385 YSFKANIESDNFVKNS---LVDMYAKCDSLTEARKVFDVM--------ADRNV----------VSYNAMIEGYSKEEKLS 443 (819)
Q Consensus 385 ~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m--------~~~~~----------~~~~~li~~~~~~g~~~ 443 (819)
.+......| ..+|.. ....+...|++.+|+++++.. .+.|. ..--.|...+...|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 111112222 222222 233455678888888888776 11111 11233455677889999
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHH---HHHhhccCchHhH--HHHHHHHH-----------HhCCccchhhHHHHHHHHH
Q 039792 444 EALDLFHEMRVGFVPPGLLTFVSL---LGLSSSVFSLESS--KQIHGLII-----------KYGVFLDVFAGSALIDAYS 507 (819)
Q Consensus 444 ~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a--~~i~~~~~-----------~~g~~~~~~~~~~li~~~~ 507 (819)
+|..++....... ++|....... |-+.....++-.+ ...++... ...-......-+.++.+|.
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999987663 3444322222 2222222222221 11111100 0000011112234444443
Q ss_pred hcCChHHHHHHHHhcCCCC-eeehhhhHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 039792 508 KCFSNKDARLVFDEMNQRD-IVVWNAMLLGYT--QQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQF 584 (819)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 584 (819)
+..+.+.++-...+... ...+.+++.... +...+.+|.+++...-+....-........+......|+++.|.++
T Consensus 321 --nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 --NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred --hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44556666666655422 223334443322 2234667777777666542222234455556667788999999888
Q ss_pred HH--------HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC------CCC----hHhHHHHHHHHHhCCChHH
Q 039792 585 HN--------HLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT------WKD----VACWNSMICTNAHHGEPMK 646 (819)
Q Consensus 585 ~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~----~~~~~~li~~~~~~g~~~~ 646 (819)
+. .+.+.+. .+.+..+++.+|.+.++-+.|..++++.. .+. ...|.-+..--.++|+-++
T Consensus 399 l~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 88 4444444 34566778888888888777777776543 111 1233334444556788888
Q ss_pred HHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 647 ALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 647 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
|..+++++.+ ..| |..+...++.+|++. +++.|..+-+.+
T Consensus 477 a~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 477 ASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 8888888887 444 456777788877765 566666554443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-07 Score=97.82 Aligned_cols=239 Identities=18% Similarity=0.161 Sum_probs=152.4
Q ss_pred HHhHHhhhhhcCCCHHHHHHHHHhcCC----------CCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCChh
Q 039792 397 VKNSLVDMYAKCDSLTEARKVFDVMAD----------RNVV-SYNAMIEGYSKEEKLSEALDLFHEMRVG---FVPPGLL 462 (819)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~ 462 (819)
+...|..+|...|+++.|+.+++...+ +.+. ..+.+...|...+++++|..+|+++..- ..-++.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h- 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH- 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 444466667777777777666655432 1111 1234555677777777777777776421 111111
Q ss_pred HHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCC
Q 039792 463 TFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLE 542 (819)
Q Consensus 463 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 542 (819)
+.-..+++.|...|.+.|++++|...++
T Consensus 280 ------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e---------------------- 307 (508)
T KOG1840|consen 280 ------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCE---------------------- 307 (508)
T ss_pred ------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHH----------------------
Confidence 1123344556667788888888777664
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHh---CCCC----chhHHHHHHHHHHhcCCHH
Q 039792 543 NEEAIKLYLELLLSQQRPNE-FTFAALITAASNLGSLKHGQQFHNHLIKL---GLDF----DSFITSALIDMYAKCGSLE 614 (819)
Q Consensus 543 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~ 614 (819)
.|++++++.... ..|.. .-++.+...|...+.++.|..+++...+. -+.+ -..+++.|...|-+.|+++
T Consensus 308 --~Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 308 --RALEIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred --HHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 455555552111 12222 23555666677777888887777765431 1222 2457888999999999999
Q ss_pred HHHHHHhcCCC-------C-C---hHhHHHHHHHHHhCCChHHHHHHHHHHHH--cCCCCCc----hhHHHHHHHHHccC
Q 039792 615 DAYETFGSTTW-------K-D---VACWNSMICTNAHHGEPMKALLLFREMII--EGLEPNY----ITFVGVLSACSHAG 677 (819)
Q Consensus 615 ~A~~~~~~~~~-------~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~----~t~~~ll~a~~~~g 677 (819)
+|.++|+++.. . + -...+.|...|.+.+++.+|.++|.+... .-+.|+. .+|..|...|...|
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 99999987651 1 1 23567788899999999999999888543 1133432 46899999999999
Q ss_pred CHHHHHHHHHHHHh
Q 039792 678 LIEDGLDHFQSMAG 691 (819)
Q Consensus 678 ~~~~a~~~~~~m~~ 691 (819)
++++|.++.+....
T Consensus 465 ~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 465 NYEAAEELEEKVLN 478 (508)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999988763
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.7e-06 Score=81.65 Aligned_cols=317 Identities=11% Similarity=-0.065 Sum_probs=200.0
Q ss_pred CCCChhHHHHHHHHhhc--cCchHhHHHHHHHHHH-hCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhh
Q 039792 457 VPPGLLTFVSLLGLSSS--VFSLESSKQIHGLIIK-YGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAM 533 (819)
Q Consensus 457 ~~p~~~t~~~ll~~~~~--~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 533 (819)
++|...+...-+.+++. .++-..+.+.+-.+.. .-+.-++.....+.+.+...|+.++|...|+....-|+.+...|
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 33444444444444332 3344444444444443 34555677778888888888999999888888776555444443
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 039792 534 ---LLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC 610 (819)
Q Consensus 534 ---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 610 (819)
.-.+.+.|+.+....+...+.... +-+..-|..-....-..++++.|..+-+..++.+.. +...+-.-..++...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 233556778777777766665431 122222333334445667888888888887776544 444444445677778
Q ss_pred CCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHH-HHHH-ccCCHHHHHH
Q 039792 611 GSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVL-SACS-HAGLIEDGLD 684 (819)
Q Consensus 611 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll-~a~~-~~g~~~~a~~ 684 (819)
|+.++|.-.|+... +-+..+|.-|+.+|...|++.+|.-+-..... .-|+. .+...+. ..|. ....-++|..
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 88888888887655 35778888899999888988888888777665 44443 4444442 2232 2334577888
Q ss_pred HHHHHHh--cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 685 HFQSMAG--FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 685 ~~~~m~~--~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
++++-.. .+..|-+...+-+...=| ..+.+....++.+...|+ ...++.|+.++...+.+.+|...+......
T Consensus 426 f~ek~L~~~P~Y~~AV~~~AEL~~~Eg----~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 426 FAEKSLKINPIYTPAVNLIAELCQVEG----PTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhhhccCCccHHHHHHHHHHHHhhC----ccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8777655 222332222222323333 456777888888887774 567888888888888888888888766532
Q ss_pred CCcCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 039792 763 GLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKG 808 (819)
Q Consensus 763 g~~~~~g~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 808 (819)
.|+.+...+.|++|+++|++
T Consensus 501 --------------------------dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 501 --------------------------DPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred --------------------------CccchHHHHHHHHHHhccCC
Confidence 45566667778877777763
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-05 Score=83.15 Aligned_cols=556 Identities=15% Similarity=0.116 Sum_probs=271.2
Q ss_pred HcCCChhhHHHHHhccCC-CCcc-hHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCch
Q 039792 98 SKANDLDGARKLFDTMSE-RNLV-SWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGN 175 (819)
Q Consensus 98 ~~~g~~~~A~~~f~~m~~-~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 175 (819)
...|+++.|..+++.... |+.. .|..+...-...|+.--|.+.|..+ |++ .
T Consensus 455 id~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai-----------------------~dv----a 507 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI-----------------------GDV----A 507 (1636)
T ss_pred cccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH-----------------------HHH----H
Confidence 346788888888877653 5554 5777777777777777777777554 111 1
Q ss_pred hHHHHHHHH-------HHhCCC-CCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHH
Q 039792 176 VGEQMHSFV-------IKSGFD-RDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLF 247 (819)
Q Consensus 176 ~~~~~~~~~-------~~~g~~-~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 247 (819)
.++.+|+.. ++.|-+ .+-.-..+++.++.| ++.+|+.+|-+- . .-..-|..|....++++|+.+-
T Consensus 508 k~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleq--n---~te~aigmy~~lhkwde~i~la 580 (1636)
T KOG3616|consen 508 KARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQ--N---ATEEAIGMYQELHKWDEAIALA 580 (1636)
T ss_pred HHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhc--c---cHHHHHHHHHHHHhHHHHHHHH
Confidence 233333322 122222 222233444544444 577788777431 1 1133456666777777777765
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcc--cCCCc
Q 039792 248 NQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEI--EVKNI 325 (819)
Q Consensus 248 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~ 325 (819)
+. .|.+.-...-.+-++++...|+-+.|-++- .+..-.-+-|..|.+.|....|.+....- ...|.
T Consensus 581 e~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de 648 (1636)
T KOG3616|consen 581 EA---KGHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADE 648 (1636)
T ss_pred Hh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccH
Confidence 43 233222222334455555555554443321 11112234577888888887776654322 23344
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhH-HhHHhhh
Q 039792 326 ISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFV-KNSLVDM 404 (819)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~ 404 (819)
.....+..++.+..-++.|-++|+++.. +.-.+..+.+-..+..|.++-+... +..+.. -..--.-
T Consensus 649 ~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~h 715 (1636)
T KOG3616|consen 649 EILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDH 715 (1636)
T ss_pred HHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHH
Confidence 4444555556666666666666666542 1112222222222333333322211 111110 0111122
Q ss_pred hhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHH
Q 039792 405 YAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIH 484 (819)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 484 (819)
+...|+++.|..-|-+.. ..-.-|.+-.....|.+|+.+++.+...... ..-|..+...|+..|+++.|++++
T Consensus 716 l~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHH
Confidence 233455555554443321 1112234455666777777777776654322 223455556666666666666665
Q ss_pred HHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCC--eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 039792 485 GLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRD--IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE 562 (819)
Q Consensus 485 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 562 (819)
-.. ..++-.|++|.+.|++++|.++-.+...|. +..|-+-..-+-.+|++.+|.++|-... .|+.
T Consensus 789 ~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~ 855 (1636)
T KOG3616|consen 789 TEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK 855 (1636)
T ss_pred Hhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH
Confidence 422 234456667777777777766666655442 2233333333455566666666554332 2332
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCC
Q 039792 563 FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHG 642 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 642 (819)
.|..|-+.|..+...++.+.-.- ..-..+...+..-|...|++..|.+-|-+.. -|.+-++.|...+
T Consensus 856 -----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~-----d~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 856 -----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG-----DFKAAVNMYKASE 922 (1636)
T ss_pred -----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh-----hHHHHHHHhhhhh
Confidence 34455556655555554433211 1112334445555566666666665554322 2444444555555
Q ss_pred ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHH
Q 039792 643 EPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAA 722 (819)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~ 722 (819)
-+++|.++.+. +| ..|..-....+.+-+-.| +.|.+++++. |+--. -||.-+... ..+.|-..+
T Consensus 923 lw~dayriakt---eg-g~n~~k~v~flwaksigg--daavkllnk~---gll~~------~id~a~d~~-afd~afdla 986 (1636)
T KOG3616|consen 923 LWEDAYRIAKT---EG-GANAEKHVAFLWAKSIGG--DAAVKLLNKH---GLLEA------AIDFAADNC-AFDFAFDLA 986 (1636)
T ss_pred hHHHHHHHHhc---cc-cccHHHHHHHHHHHhhCc--HHHHHHHHhh---hhHHH------Hhhhhhccc-chhhHHHHH
Confidence 55555443321 11 122222333333333333 3344444331 11000 001000000 233333333
Q ss_pred HHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 723 EMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 723 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
+.+.+ -.-+..+..++.-+-..|++++|.+-+-+..+.+
T Consensus 987 ri~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 987 RIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 33332 3356788889999999999999988776655443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=9e-08 Score=107.22 Aligned_cols=227 Identities=12% Similarity=-0.023 Sum_probs=151.9
Q ss_pred CchHhHHHHHHHHHHhCCccchhhHHHHHHHHH---------hcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCC
Q 039792 475 FSLESSKQIHGLIIKYGVFLDVFAGSALIDAYS---------KCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLE 542 (819)
Q Consensus 475 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 542 (819)
++.+.|...++..++.... +...+..+..+|. ..++.++|...+++..+ | +...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4567788888877765443 2344444544443 22347788888887765 2 45567777777888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 039792 543 NEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGS 622 (819)
Q Consensus 543 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 622 (819)
+++|...|++..+.. +.+...+..+...+...|++++|...++.+++..+. +...+..++..+...|++++|.+.+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 888888888888752 234556777777888888888888888888887655 333333344456667888888888877
Q ss_pred CC---CC-ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchh-HHHHHHHHHccCCHHHHHHHHHHHHh-cCCcc
Q 039792 623 TT---WK-DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYIT-FVGVLSACSHAGLIEDGLDHFQSMAG-FGIEP 696 (819)
Q Consensus 623 ~~---~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p 696 (819)
.. .| +...+..+...|...|+.++|.+.++++.. ..|+..+ .+.+...+...| ++|...++.+.+ ..-.|
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 54 23 344567777788888888888888888765 4566544 344444566666 577777777776 55555
Q ss_pred CchHHHHHHHHh
Q 039792 697 GMEHYASVVSLL 708 (819)
Q Consensus 697 ~~~~y~~li~~l 708 (819)
.......++..+
T Consensus 508 ~~~~~~~~~~~~ 519 (553)
T PRK12370 508 NNPGLLPLVLVA 519 (553)
T ss_pred cCchHHHHHHHH
Confidence 544444444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-06 Score=82.70 Aligned_cols=367 Identities=14% Similarity=0.114 Sum_probs=181.8
Q ss_pred hcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--CCcchHHH-HHHHHHhcCChhHHH
Q 039792 370 CGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD--RNVVSYNA-MIEGYSKEEKLSEAL 446 (819)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~~~~g~~~~A~ 446 (819)
.-+.++-+.-..+++.+...- .---+|..+.-..-.+++|.+++.++.. |+-...|. +.-+|.+..-++-+.
T Consensus 131 ahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 131 AHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred HHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHH
Confidence 344455555555554443221 1112233333333456778888877764 33344443 334566666677777
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhc--cCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcC-----ChHHHHHHH
Q 039792 447 DLFHEMRVGFVPPGLLTFVSLLGLSSS--VFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCF-----SNKDARLVF 519 (819)
Q Consensus 447 ~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~ 519 (819)
++++--... .||+ |+..=+.+|.. .-+-..+++-...+.+.+-..- ..+.-+++.+ .-+.|.+++
T Consensus 206 evl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~-----~f~~~l~rHNLVvFrngEgALqVL 277 (557)
T KOG3785|consen 206 EVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY-----PFIEYLCRHNLVVFRNGEGALQVL 277 (557)
T ss_pred HHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-----hhHHHHHHcCeEEEeCCccHHHhc
Confidence 766665543 2332 22222333322 2222223332333333221110 1122222221 224455544
Q ss_pred HhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----hccCChHHHHHHHHHHHHhCCC
Q 039792 520 DEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAA-----SNLGSLKHGQQFHNHLIKLGLD 594 (819)
Q Consensus 520 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~ 594 (819)
-.+.+.=+..--.|+--|.+.++..+|..+.+++.- ..|-......+..+- .....+..|.+.|+..-..+..
T Consensus 278 P~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~e 355 (557)
T KOG3785|consen 278 PSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALE 355 (557)
T ss_pred hHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccc
Confidence 433321112222344457788888888887766542 233333332222221 1222355666777666555554
Q ss_pred CchhH-HHHHHHHHHhcCCHHHHHHHHhcCC----CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 039792 595 FDSFI-TSALIDMYAKCGSLEDAYETFGSTT----WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGV 669 (819)
Q Consensus 595 ~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 669 (819)
-|..- -.++...+.-.-++++....++.+. ..|...+| +..+++..|++.+|.++|-+.....+ -|..+|.++
T Consensus 356 cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~ 433 (557)
T KOG3785|consen 356 CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSM 433 (557)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHH
Confidence 43322 2345555555566777777777665 33444444 67888888999999988877754222 255666655
Q ss_pred HH-HHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccc---hhhhHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 039792 670 LS-ACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW---NVELGRYAAEMAISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 670 l~-a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 745 (819)
+. +|.+.|+.+-|+.++-++.. |. +.+ +++.+....-+ ..--|-+++..+-.++|. ++.|
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t----~~-e~f-sLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW--------- 497 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNT----PS-ERF-SLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENW--------- 497 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCC----ch-hHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc---------
Confidence 54 77888888888887765532 21 111 12222221100 333445566666666773 4444
Q ss_pred CCCchHHHHHHHHHHhCCCcCCCc
Q 039792 746 NSMWADAKQVRKKMDLDGLMKEAG 769 (819)
Q Consensus 746 ~g~~~~a~~~~~~m~~~g~~~~~g 769 (819)
.|+......++..+....-.+.|+
T Consensus 498 eGKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 498 EGKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred CCccchHHHHHHHHHcCCCCCCch
Confidence 355555666666665443334443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.8e-06 Score=86.95 Aligned_cols=129 Identities=18% Similarity=0.108 Sum_probs=61.4
Q ss_pred CChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHH
Q 039792 308 GRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSF 387 (819)
Q Consensus 308 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 387 (819)
.++.+|..+|-+-. .-...|..|....++++|+.+-+.. |.+.=...-.+-++++...|+-+.|-++
T Consensus 545 kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~el----- 611 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAEL----- 611 (1636)
T ss_pred hhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhh-----
Confidence 35666766664321 1123345555566666666654332 1111111112233344444444433322
Q ss_pred HcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 039792 388 KANIESDNFVKNSLVDMYAKCDSLTEARKVFDV--MADRNVVSYNAMIEGYSKEEKLSEALDLFHEMR 453 (819)
Q Consensus 388 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 453 (819)
..+..---+-|..|.+.|..-.|.+.-.. ....|......+..++.+..-+++|-++|+++.
T Consensus 612 ----k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~ 675 (1636)
T KOG3616|consen 612 ----KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIH 675 (1636)
T ss_pred ----ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh
Confidence 11112223556778888877776654422 112344445555555666556666666666653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-05 Score=82.83 Aligned_cols=436 Identities=13% Similarity=0.019 Sum_probs=238.3
Q ss_pred hhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHH--HHHH--HHcCCChhHH
Q 039792 269 CSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTT--LIGG--YMQNSFDREA 344 (819)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--li~~--~~~~g~~~~A 344 (819)
+...+++++|.+....++..+ +.|...+..=+-+..+.+++++|..+.+.-.... +++. +=.+ ..+.+..++|
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHHHH
Confidence 334455555555555555444 2334444444455666777777776555433211 1222 2333 4478899999
Q ss_pred HHHHHHHHHCCCCCCcc-hHHHHHHHhcCCcchhhHHHHHHHHHHcCCCC-ChhHHhHHhhhhhcCCCHHHHHHHHHhcC
Q 039792 345 MKLFTEMTRSGWKPDDF-ACSSVLTSCGSVEALEQGRQVHAYSFKANIES-DNFVKNSLVDMYAKCDSLTEARKVFDVMA 422 (819)
Q Consensus 345 ~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (819)
+..++ |..++.. +...=...|.+.++++++..+|..+.+++.+. +...-..++..-. .-.+. +.+..+
T Consensus 99 lk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~ 168 (652)
T KOG2376|consen 99 LKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVP 168 (652)
T ss_pred HHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhcc
Confidence 99988 4555443 44444556889999999999999998887643 2222222222111 11121 344444
Q ss_pred CCCcchHHHH---HHHHHhcCChhHHHHHHHHHHhC-------C------CCCChhH-HHHHHHHhhccCchHhHHHHHH
Q 039792 423 DRNVVSYNAM---IEGYSKEEKLSEALDLFHEMRVG-------F------VPPGLLT-FVSLLGLSSSVFSLESSKQIHG 485 (819)
Q Consensus 423 ~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~-------g------~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~ 485 (819)
.....+|..+ ...++..|++.+|++++..-.+- + +.-+..+ -..+.-++-..|+-+++..++.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4334344443 34567899999999999887211 1 1111111 1233445567899999999999
Q ss_pred HHHHhCCccc---hhhHHHHHHHHHhcCChH-HHHHHHHhcCCCCe--------------eeh-hhhHHHHHhcCCHHHH
Q 039792 486 LIIKYGVFLD---VFAGSALIDAYSKCFSNK-DARLVFDEMNQRDI--------------VVW-NAMLLGYTQQLENEEA 546 (819)
Q Consensus 486 ~~~~~g~~~~---~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~--------------~~~-~~li~~~~~~g~~~~A 546 (819)
.+++....-. ....|.|+.+-....-.+ .+...++....... +.. +.++..|.. ..+.+
T Consensus 249 ~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn--k~~q~ 326 (652)
T KOG2376|consen 249 DIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN--KMDQV 326 (652)
T ss_pred HHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHH
Confidence 8888765422 122233332211111111 22223332221111 111 112222211 12222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh---
Q 039792 547 IKLYLELLLSQQRPNEFTFAALITAASNL--GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFG--- 621 (819)
Q Consensus 547 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--- 621 (819)
.++-.... +..|. ..+.+++..+.+. .....+..++...-+..+.-...+.-.++......|+++.|.+++.
T Consensus 327 r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 327 RELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 22222211 11232 3455555555332 2355666666666655544445666677888888999999999888
Q ss_pred -----cCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCCch----hHHHHHHHHHccCCHHHHHHHHHH
Q 039792 622 -----STT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIE--GLEPNYI----TFVGVLSACSHAGLIEDGLDHFQS 688 (819)
Q Consensus 622 -----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~ 688 (819)
.+. ..-+.+..++..-|.+.++.+.|..++.+.+.. .-.+... ++.-+..--.+.|+-++|..++++
T Consensus 404 ~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 404 ESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 333 222334455666677777777777777776541 1122222 333333344456899999999999
Q ss_pred HHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHH
Q 039792 689 MAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMA 725 (819)
Q Consensus 689 m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~ 725 (819)
+.+. ..++.+...++|.+|.+- |.+.|+.+.+++
T Consensus 484 l~k~-n~~d~~~l~~lV~a~~~~--d~eka~~l~k~L 517 (652)
T KOG2376|consen 484 LVKF-NPNDTDLLVQLVTAYARL--DPEKAESLSKKL 517 (652)
T ss_pred HHHh-CCchHHHHHHHHHHHHhc--CHHHHHHHhhcC
Confidence 8872 236778888899999886 788777666554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-07 Score=96.65 Aligned_cols=199 Identities=15% Similarity=0.148 Sum_probs=118.3
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh-----CCC-Cch-
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLS-----Q--QRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL-----GLD-FDS- 597 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~- 597 (819)
.+...|...+++.+|..+|+++..- | .+--..++..|-.+|.+.|++++|...++.+.+. +.. |.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 3455677777777777777776531 1 1112345566666777888888877777665431 111 111
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCCh----HhHHHHHHHHHhCCChHHHHHHHHHHHHc------CCC
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT-------WKDV----ACWNSMICTNAHHGEPMKALLLFREMIIE------GLE 660 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 660 (819)
..++.++..++..+++++|..++.... .++. -+++.|...|...|++++|.++|++.+.. +..
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 223445556666777777766665322 1221 25666677777777777777777666542 111
Q ss_pred CC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHcc-CCCCchhHHH
Q 039792 661 PN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISI-DPMDSGSYTL 738 (819)
Q Consensus 661 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~-~p~~~~~~~~ 738 (819)
+. ...++.+..+|.+.+.+++|.++|..... .. +.+.- .|+-..+|-.
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~-----------------------------i~-~~~g~~~~~~~~~~~n 455 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD-----------------------------IM-KLCGPDHPDVTYTYLN 455 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHH-----------------------------HH-HHhCCCCCchHHHHHH
Confidence 21 23456666666666666666666654432 11 11121 3444568889
Q ss_pred HHHHHHhCCCchHHHHHHHHHH
Q 039792 739 LSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 739 l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
|+.+|...|++++|.++-....
T Consensus 456 L~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 456 LAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 9999999999999999987765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5e-06 Score=80.73 Aligned_cols=418 Identities=12% Similarity=0.066 Sum_probs=224.0
Q ss_pred HHHhcCChhHHHHHHhcCCC---CCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhH
Q 039792 202 LYAKNGSVDDAKFVFDGLMV---KTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGG 278 (819)
Q Consensus 202 ~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 278 (819)
.|.+.|++++|..++..+.. ++...|-.+.-.+.-.|.+.+|..+-....+ ++..-..+....-+.++-+.-
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHH
Confidence 45567888888888776532 3445565565555566777777766554321 222233334444455666655
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccC--CCcccHHHH-HHHHHcCCChhHHHHHHHHHHHCC
Q 039792 279 KQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV--KNIISWTTL-IGGYMQNSFDREAMKLFTEMTRSG 355 (819)
Q Consensus 279 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g 355 (819)
.++++.+...- .-.-+|.++..-.-.+.+|+.++.++.. |+....|.- .-+|.+..-++-+.+++.-..+.
T Consensus 141 ~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q- 214 (557)
T KOG3785|consen 141 LTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ- 214 (557)
T ss_pred HHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-
Confidence 56555544321 2223344443344467788888887763 334444443 33566667777777777766653
Q ss_pred CCCCcchHHHHHHHhc--CCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHH
Q 039792 356 WKPDDFACSSVLTSCG--SVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMI 433 (819)
Q Consensus 356 ~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li 433 (819)
.|| .|+..=+.+|. +.=+-..+.+-...+.+.+-..-++.--.+-.-+.-...-+.|.+++-.+.+.-...--.|+
T Consensus 215 -~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~ 292 (557)
T KOG3785|consen 215 -FPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLI 292 (557)
T ss_pred -CCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhe
Confidence 343 23333333432 22222223333333333222111111000001111112234455554443322222233344
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChH
Q 039792 434 EGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNK 513 (819)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 513 (819)
--|.++++..+|..+.+++.- ..|-....-.+.. .++..-......+.
T Consensus 293 iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~------------------------------aalGQe~gSreHlK 340 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF------------------------------AALGQETGSREHLK 340 (557)
T ss_pred eeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH------------------------------HHhhhhcCcHHHHH
Confidence 456777788888777766521 1222222221111 11111111122234
Q ss_pred HHHHHHHhcCC-----CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 039792 514 DARLVFDEMNQ-----RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHL 588 (819)
Q Consensus 514 ~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 588 (819)
-|...|+-.-+ .++.--.+|.+.+.-..++++.+..++....--..-|.+. ..+.++.+..|++.+|+++|-.+
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhh
Confidence 45555554332 1233345566666667778888887777766533333333 35677888888999999888777
Q ss_pred HHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhcCCCC-ChHhHHH-HHHHHHhCCChHHHHHHHHHHHHcCCCCCchh
Q 039792 589 IKLGLDFDSFIT-SALIDMYAKCGSLEDAYETFGSTTWK-DVACWNS-MICTNAHHGEPMKALLLFREMIIEGLEPNYIT 665 (819)
Q Consensus 589 ~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 665 (819)
....++ +..+| ..|..+|.++++.+-|++++-++..| +..+.-. +..-|-+.+.+--|-+.|+++.. +.|+..-
T Consensus 420 s~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEn 496 (557)
T KOG3785|consen 420 SGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPEN 496 (557)
T ss_pred cChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccc
Confidence 655555 44444 55678899999999999998887754 3344433 44567778888888888888877 7787776
Q ss_pred HHH
Q 039792 666 FVG 668 (819)
Q Consensus 666 ~~~ 668 (819)
|..
T Consensus 497 WeG 499 (557)
T KOG3785|consen 497 WEG 499 (557)
T ss_pred cCC
Confidence 643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-05 Score=82.40 Aligned_cols=239 Identities=13% Similarity=0.123 Sum_probs=162.2
Q ss_pred CcchhhHHHH--HHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHC-C--------CCCChh
Q 039792 192 DVYVGTSLMN--LYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRET-D--------VVHDKY 260 (819)
Q Consensus 192 ~~~~~~~ll~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~ 260 (819)
|..+-.++++ .|.--|+++.|.+-.+.+. +-..|..|.+.|++..+.+-|.-.+..|... | -.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4556666665 5778899999988776553 4457999999999999999988888877632 1 1122 2
Q ss_pred hHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCc-ccHHHHHHHHHcCC
Q 039792 261 LLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNI-ISWTTLIGGYMQNS 339 (819)
Q Consensus 261 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g 339 (819)
+=.-+.-.....|.+++|+.++..-.+. ..|=..|-..|.+++|.++-+.-.+-.. .||..-...+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 2222223345678889999988876653 3455667788999999988765332111 24544555555667
Q ss_pred ChhHHHHHHHHH----------HHCC---------CCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhH
Q 039792 340 FDREAMKLFTEM----------TRSG---------WKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNS 400 (819)
Q Consensus 340 ~~~~A~~~~~~m----------~~~g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 400 (819)
+.+.|++.|++- +... -+-|...|...-.-+...|+.+.|..++..+.. |-+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 777777777652 1110 123444455555556677888888888776553 456
Q ss_pred HhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 039792 401 LVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMR 453 (819)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 453 (819)
++...|-.|+.++|-++-++- .|......|...|-..|++.+|..+|.+.+
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 777888889999998887664 466667778889999999999999998854
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-07 Score=82.91 Aligned_cols=160 Identities=14% Similarity=0.069 Sum_probs=129.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHc
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSH 675 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 675 (819)
...|.-.|...|+...|..-+++.. +.+..+|..+...|.+.|+.+.|.+.|++..+ +.|+. ...|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh
Confidence 3446667889999999999998877 33456888899999999999999999999998 88865 578888888888
Q ss_pred cCCHHHHHHHHHHHHh---cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHH
Q 039792 676 AGLIEDGLDHFQSMAG---FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADA 752 (819)
Q Consensus 676 ~g~~~~a~~~~~~m~~---~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 752 (819)
.|.+++|...|+.... +|-.+ .+|..+.-.--+++ +.+.++..++++++++|+++.+...++..+...|++-+|
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s--~t~eN~G~Cal~~g-q~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPS--DTLENLGLCALKAG-QFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcc--hhhhhhHHHHhhcC-CchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999887 33333 34443333333333 788899999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 039792 753 KQVRKKMDLDGL 764 (819)
Q Consensus 753 ~~~~~~m~~~g~ 764 (819)
...+++....|.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-05 Score=83.12 Aligned_cols=123 Identities=20% Similarity=0.233 Sum_probs=93.3
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 039792 531 NAMLLGYTQQLENEEAIKLYLELLLSQQRPN-EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK 609 (819)
Q Consensus 531 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 609 (819)
.-+...|-..|++++|++.+++.++. .|+ ...|..-...+.+.|++.+|...++........ |..+-+-.+..+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 44456677889999999999988875 565 455667777888899999999999988887765 77777778888889
Q ss_pred cCCHHHHHHHHhcCCCCCh----------HhH--HHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 610 CGSLEDAYETFGSTTWKDV----------ACW--NSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 610 ~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
+|++++|.+++.....++. ..| .....+|.+.|++..|++.|....+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999988877664441 244 3456778888888888877666543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-05 Score=78.93 Aligned_cols=266 Identities=11% Similarity=0.034 Sum_probs=130.7
Q ss_pred CCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHH---HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 039792 391 IESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNA---MIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSL 467 (819)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 467 (819)
+..++.....+.+.+...|+.++|...|++...-|..+... ...-+.+.|+.++...+...+.... .-....|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 45566677778888888888888888887765433322221 1223456677776666666654321 1111112112
Q ss_pred HHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHH
Q 039792 468 LGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENE 544 (819)
Q Consensus 468 l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 544 (819)
....-...+.+.|..+-+..++.... +...+-.-...+...+++++|.-.|+.... | +..+|.-|+.+|...|++.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 22223344555555555544443221 111222222344555666666666655432 2 4556666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 039792 545 EAIKLYLELLLSQQRPNEFTFAALI-TAAS-NLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGS 622 (819)
Q Consensus 545 ~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 622 (819)
+|.-.-++.... ++.+..+++.+- ..|. ....-++|+.+++...+..+. -....+.+...+...|+.+++..++++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 665554443322 223333333331 2221 122234555555555444332 233344455555555555555555554
Q ss_pred CC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 623 TT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 623 ~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
.. .+|....+.|...+...+.+++|++.|...+. +.|+
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPK 503 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence 43 45555555555555555555555555555554 4453
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.0001 Score=81.41 Aligned_cols=327 Identities=14% Similarity=0.078 Sum_probs=148.5
Q ss_pred HHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHH
Q 039792 413 EARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIK 489 (819)
Q Consensus 413 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 489 (819)
.|...+.+..+ .+...||.|--. ..-|.+.-|...|-+-... .+-...+|..+--.|....+++.|...+.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 45555554332 455666665443 3344555554444443322 222334454444455566666666666665554
Q ss_pred hCCccchhhHHHHHHHHHhcCChHHHHHHHHhc-----CC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHH------
Q 039792 490 YGVFLDVFAGSALIDAYSKCFSNKDARLVFDEM-----NQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLL------ 555 (819)
Q Consensus 490 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------ 555 (819)
..+. +...+--..-.-...|+.-++..+|..- .+ ++..-|-.-.....++|+.++-+..-++...
T Consensus 879 LdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 LDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred cCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 3322 2222211111222345555555555431 11 2333333333333445554443333222211
Q ss_pred ---CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCchhHHH----HHHHHHHhcCCHHHHHHHHhcCC-CC
Q 039792 556 ---SQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL-GLDFDSFITS----ALIDMYAKCGSLEDAYETFGSTT-WK 626 (819)
Q Consensus 556 ---~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~-~~ 626 (819)
.+.+-+.+.|........+.+.+..+.....+++.. ..+.+...|+ -+...++..|.++.|..-+.... .-
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ev 1037 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEV 1037 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhH
Confidence 123444556666665555556555555554443310 0111233333 23344555666666655554433 11
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHY 701 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y 701 (819)
|..+-.+-+.. .-.|+++++++.|++... +.-+. +....++.+...++.-+.|...+-+... .+..-...--
T Consensus 1038 dEdi~gt~l~l-Ffkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~ 1114 (1238)
T KOG1127|consen 1038 DEDIRGTDLTL-FFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLP 1114 (1238)
T ss_pred HHHHhhhhHHH-HHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHH
Confidence 22211111111 334566777777777665 22221 2233444444555555666655555444 3322211111
Q ss_pred HHHHHHhh-cc-------------------cc--------------hhhhHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 039792 702 ASVVSLLG-RN-------------------VW--------------NVELGRYAAEMAISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 702 ~~li~~l~-r~-------------------~w--------------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 745 (819)
-+.+..+. .+ -| +-..+.+..++++-..|.|+..|..|.+-|++
T Consensus 1115 L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~vrya~ 1192 (1238)
T KOG1127|consen 1115 LPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSVRYAQ 1192 (1238)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 11111111 11 01 44566777788888888888888888765543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.6e-06 Score=77.40 Aligned_cols=198 Identities=13% Similarity=0.067 Sum_probs=159.1
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG 611 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 611 (819)
.|.-+|.+.|++..|..-+++.++.. +-+..++..+...|.+.|..+.|.+-|+..++..+. +..+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 46678899999999999999988752 335567888888899999999999999999998766 7889999999999999
Q ss_pred CHHHHHHHHhcCC-CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHH
Q 039792 612 SLEDAYETFGSTT-WKD----VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDH 685 (819)
Q Consensus 612 ~~~~A~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 685 (819)
++++|...|++.. .|+ ..+|..+..+..+.|+.+.|...|++.++ ..|+. .+...+.......|++-.|..+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 9999999999876 443 45898899899999999999999999998 78875 6888999999999999999999
Q ss_pred HHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchh
Q 039792 686 FQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGS 735 (819)
Q Consensus 686 ~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~ 735 (819)
++.....+. ++.+....-|..-.+.+ |.+.+.+.-.++....|.....
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~g-d~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLG-DRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCcHHH
Confidence 998887433 66665544443333222 5666666667777777765543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-06 Score=83.99 Aligned_cols=225 Identities=12% Similarity=0.069 Sum_probs=134.7
Q ss_pred hHHhhhhhcCCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCc
Q 039792 399 NSLVDMYAKCDSLTEARKVFDVMAD--RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFS 476 (819)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 476 (819)
+.+..+|.+.|.+.+|++.|+.-.+ +-+.||-.|-..|.+-.+++.|+.++.+-.+. .|..+||
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~------------ 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTY------------ 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhh------------
Confidence 4555555566666666555554432 34445555555555555555555555554432 2333333
Q ss_pred hHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHH
Q 039792 477 LESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLEL 553 (819)
Q Consensus 477 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 553 (819)
..-+...+...++.++|.++++...+ .++.....+..+|.-.++++-|+..|+++
T Consensus 293 ----------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 293 ----------------------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred ----------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 23334445555666777777776654 35566666677788888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---Ch
Q 039792 554 LLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDF--DSFITSALIDMYAKCGSLEDAYETFGSTTWK---DV 628 (819)
Q Consensus 554 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~ 628 (819)
.+.|+. +...|..+--+|...+.++-+..-|.+....--.| -..+|-.|.....-.|++.-|.+.|+-.... +.
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 887754 45566667777777777777777777666533222 2344555555556666666666666655422 23
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
.++|.|...-.+.|++++|..+++.... +.|+
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhh--hCcc
Confidence 4566666666666666666666666655 5555
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00014 Score=76.94 Aligned_cols=374 Identities=13% Similarity=0.056 Sum_probs=209.8
Q ss_pred ccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCC---CcccHHHHHHHHHcCCChhHHHHH
Q 039792 271 MLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVK---NIISWTTLIGGYMQNSFDREAMKL 347 (819)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 347 (819)
..+++..+....+.+++ +.+....+.....-.+...|+-++|....+.-... +.+.|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34455555555555555 22222233333333344567888888777765543 446788887777788889999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC---C
Q 039792 348 FTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD---R 424 (819)
Q Consensus 348 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~ 424 (819)
|+.... +.||.... +.-|.-.-.+.++++.....-....+ .
T Consensus 98 y~nAl~--~~~dN~qi----------------------------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 98 YRNALK--IEKDNLQI----------------------------------LRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred HHHHHh--cCCCcHHH----------------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 988876 44543222 11111111222333333333332222 3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhHHHHHHH------HhhccCchHhHHHHHHHHHHhCCccchh
Q 039792 425 NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGF-VPPGLLTFVSLLG------LSSSVFSLESSKQIHGLIIKYGVFLDVF 497 (819)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 497 (819)
....|..+..++.-.|+...|..++++..+.. ..|+...+..... .....|.++.+.+.+...... +.....
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla 220 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLA 220 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHH
Confidence 45678888888888999999999999987654 3566655543332 234456666665554433221 111222
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC--CCeeehhhh-HHHHHhcCCHHHHH-HHHHHHHHCC---CCCCHHHHHHHHH
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ--RDIVVWNAM-LLGYTQQLENEEAI-KLYLELLLSQ---QRPNEFTFAALIT 570 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~~g---~~p~~~t~~~ll~ 570 (819)
.-..-.+.+.+.+++++|..++..+.. ||..-|+.. ..++.+-.+.-+++ .+|....+.- -.|-... ++
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp----ls 296 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP----LS 296 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc----HH
Confidence 233455677888999999999998876 444444443 34443344444444 5666554431 1121111 11
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH----HHHhc--------------CCCCChHhHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAY----ETFGS--------------TTWKDVACWN 632 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~--------------~~~~~~~~~~ 632 (819)
......-.+....++....+.|+++ ++..+...|-.-...+--. .+... ...|....|+
T Consensus 297 vl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 297 VLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred HhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 1112222333445666666777653 4444444443322111111 11111 1134555565
Q ss_pred H--HHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 633 S--MICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 633 ~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
. ++..|-..|+++.|..+.+..++ -.|+.+ -|..=...+.|.|++++|...+++..+
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 4 66778888999999999888887 567654 455555778889999998888888765
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00011 Score=79.16 Aligned_cols=396 Identities=14% Similarity=0.074 Sum_probs=229.1
Q ss_pred hCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHH
Q 039792 288 RGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVK---NIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACS 364 (819)
Q Consensus 288 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 364 (819)
..+.-|..+|..|.-+...+|+++.+.+.|++...- ....|+.+-..|...|.-..|+.+++.-....-.|+..+--
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345668999999999999999999999999987633 33569999999999999999999998876543335444433
Q ss_pred HHHHH-hc-CCcchhhHHHHHHHHHHc--CC--CCChhHHhHHhhhhhcC----C-------CHHHHHHHHHhcCCC---
Q 039792 365 SVLTS-CG-SVEALEQGRQVHAYSFKA--NI--ESDNFVKNSLVDMYAKC----D-------SLTEARKVFDVMADR--- 424 (819)
Q Consensus 365 ~ll~~-~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~----g-------~~~~A~~~~~~m~~~--- 424 (819)
.+... |. +.+..+++..+-..++.. +. ...+..|-.+.-+|... . ...++.+.+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333 43 456777777776666652 11 11223333333333221 1 123455566665432
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHH-hCCccchhhHHHHH
Q 039792 425 NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIK-YGVFLDVFAGSALI 503 (819)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li 503 (819)
|....--+.--|+..++.+.|++..++..+-+-.-+...+..+.-.++..+++..|+.+.+.... .|....... .-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~--~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD--GKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch--hhh
Confidence 22222223344667788999999999988877777778888888888888899999888877654 222110000 001
Q ss_pred HHHHhcCChHHHHHHHHhcC--------------------------C-----CCe-eehhhhHHHHHhcCCHHHHHHHHH
Q 039792 504 DAYSKCFSNKDARLVFDEMN--------------------------Q-----RDI-VVWNAMLLGYTQQLENEEAIKLYL 551 (819)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~--------------------------~-----~~~-~~~~~li~~~~~~g~~~~A~~~~~ 551 (819)
+.-...++.+++......+. - .+. .++..+ .+.... +...+..-.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a~-~~~~~~se~- 631 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVAS-QLKSAGSEL- 631 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHHh-hhhhccccc-
Confidence 11112333333332222111 0 011 111111 111110 000000000
Q ss_pred HHHHCCCCCCH--------HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 039792 552 ELLLSQQRPNE--------FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGST 623 (819)
Q Consensus 552 ~m~~~g~~p~~--------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 623 (819)
.|...-+.|+. ..|......+.+.+..++|...+.+..+..+. ...+|.-....+...|.+++|.+.|...
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 01111122211 12333444556666777776666665554322 4556666666777777777777777665
Q ss_pred C--CC-ChHhHHHHHHHHHhCCChHHHHH--HHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 624 T--WK-DVACWNSMICTNAHHGEPMKALL--LFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 624 ~--~~-~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
. .| ++.+-+++...+.+.|+..-|.. ++..+.+ +.|+ ...|..+...+-+.|+.++|.+.|.....
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 5 33 45567777777777777666666 7777777 6664 45777777777777777777777776655
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00034 Score=74.08 Aligned_cols=433 Identities=13% Similarity=0.075 Sum_probs=211.6
Q ss_pred HHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHH
Q 039792 234 YVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMA 313 (819)
Q Consensus 234 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 313 (819)
+...|+-++|.+..+.-.+..+ -+.+.|..+--......++++|...+...++.+. .|..++.-|--.-++-|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhH
Confidence 4556777777777666554332 2445566555555666677777777777766542 2455555554444555555544
Q ss_pred HHHHhccc---CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCcchHHHHHHH------hcCCcchhhHHHHH
Q 039792 314 RRLFDEIE---VKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSG-WKPDDFACSSVLTS------CGSVEALEQGRQVH 383 (819)
Q Consensus 314 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~------~~~~~~~~~a~~~~ 383 (819)
...-.... ...-..|..+..++--.|+...|..++++..+.. -.|+...|.....- ....|.++.+.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 44433332 2233567777777777777777777777776543 24555554433222 23344444444444
Q ss_pred HHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--CCcchHHHHH-HHHHhcCChhHHH-HHHHHHHhCCCCC
Q 039792 384 AYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD--RNVVSYNAMI-EGYSKEEKLSEAL-DLFHEMRVGFVPP 459 (819)
Q Consensus 384 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~~p 459 (819)
...... +......-..-.+.+.+.+++++|..++..+.. ||...|+... .++.+--+.-+++ .+|....+. .+-
T Consensus 209 ~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r 286 (700)
T KOG1156|consen 209 LDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPR 286 (700)
T ss_pred HhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Ccc
Confidence 332211 111111122333445556666666666665544 3333333322 2222222222222 333333221 111
Q ss_pred ChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHh
Q 039792 460 GLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQ 539 (819)
Q Consensus 460 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 539 (819)
....-..=++......-.+....++....+.|+++ ++..+...|-.-...+ ++++ ++..|..
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~-----------Lvt~y~~ 348 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEK-----------LVTSYQH 348 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHH-----------HHHHHHh
Confidence 11111111111111222222233333333344332 2222222221111110 1111 1111111
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 039792 540 QLENEEAIKLYLELLLSQQRPNEF--TFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAY 617 (819)
Q Consensus 540 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 617 (819)
.-.........+.= .--+|... |+..+...+-+.|+++.|..+++..+..-+. -+..|..-..++...|.+++|.
T Consensus 349 ~L~~~~~f~~~D~~--~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa 425 (700)
T KOG1156|consen 349 SLSGTGMFNFLDDG--KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAA 425 (700)
T ss_pred hcccccCCCccccc--ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHH
Confidence 10000000000000 00144443 3445667778888999999888888775432 3445555567888889999999
Q ss_pred HHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-C-----chhHHHHH--HHHHccCCHHHHHHHH
Q 039792 618 ETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEP-N-----YITFVGVL--SACSHAGLIEDGLDHF 686 (819)
Q Consensus 618 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~-----~~t~~~ll--~a~~~~g~~~~a~~~~ 686 (819)
.++++.. .+|...=.--..-..+.++.++|.++.......|..- + ...|..+- .+|.+.|++-+|++-|
T Consensus 426 ~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 426 AWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 8888766 3443322233444556788888988888888776421 1 12243333 3688888888888777
Q ss_pred HHHHh
Q 039792 687 QSMAG 691 (819)
Q Consensus 687 ~~m~~ 691 (819)
..+..
T Consensus 506 h~i~k 510 (700)
T KOG1156|consen 506 HEIEK 510 (700)
T ss_pred hhHHH
Confidence 77665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.8e-08 Score=61.65 Aligned_cols=33 Identities=36% Similarity=0.552 Sum_probs=29.1
Q ss_pred CCCCCcchhhHHHHHHHhcCChhHHHHHHhcCC
Q 039792 188 GFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLM 220 (819)
Q Consensus 188 g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 220 (819)
|+.||+.+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 778999999999999999999999999998874
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=8e-08 Score=61.02 Aligned_cols=33 Identities=39% Similarity=0.554 Sum_probs=26.4
Q ss_pred CCCCChhhhhHHHHHHHcCCChhhHHHHHhccC
Q 039792 82 GLQCDTFLANMLLRNYSKANDLDGARKLFDTMS 114 (819)
Q Consensus 82 g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~ 114 (819)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.6e-05 Score=78.79 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=14.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 665 TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 665 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+|..+...+.+.|++++|...|++..+
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455555555555555555555555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00012 Score=81.01 Aligned_cols=245 Identities=13% Similarity=0.099 Sum_probs=147.5
Q ss_pred HHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 039792 514 DARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIK 590 (819)
Q Consensus 514 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 590 (819)
.|...+....+ .+...||.|--. ...|++.-|...|-+-... .+-+..+|..+--.|....+++.|...+.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 45555554433 566777776544 4456666666555544432 234556777777777888888888888888877
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--------CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHc-----
Q 039792 591 LGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--------WKDVACWNSMICTNAHHGEPMKALLLFREMIIE----- 657 (819)
Q Consensus 591 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 657 (819)
..+. +...|-...-.....|+.-++..+|..-. -++..-|-.-..-..++|+.++-+...+.+-..
T Consensus 879 LdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 LDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred cCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 6543 44444444444455677777777775411 344445554444556666666554444333211
Q ss_pred ---CCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcc----------------cc---
Q 039792 658 ---GLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRN----------------VW--- 713 (819)
Q Consensus 658 ---g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~----------------~w--- 713 (819)
+-.|+ ...|.....-..+.+.+++|.+...+... .-.+-+...|+.....+||- .|
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ev 1037 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEV 1037 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhH
Confidence 12354 46777777778888888888777777655 44445555666555555554 12
Q ss_pred ---------------hhhhHHHHHHHHHccCCCCchhHHHHHHH---HHhCCCchHHHHHHHHHHh
Q 039792 714 ---------------NVELGRYAAEMAISIDPMDSGSYTLLSNT---FACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ---------------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---y~~~g~~~~a~~~~~~m~~ 761 (819)
+++.+...+++++.+..++...-+.+..+ ...++.-+.|....-+..+
T Consensus 1038 dEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1038 DEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 67778888899988876665544444433 3455666667666555543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.7e-05 Score=82.55 Aligned_cols=127 Identities=14% Similarity=0.064 Sum_probs=102.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChHhHHHHHHHHHh
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWK---DVACWNSMICTNAH 640 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 640 (819)
++..+...+...|+++.|.++.+..++..+. .+..|..-...|-+.|++++|.+.++....- |-..=+-.+..+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 4455677788999999999999999998654 5788889999999999999999999887743 44555667778889
Q ss_pred CCChHHHHHHHHHHHHcCCCCCch------hH--HHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 641 HGEPMKALLLFREMIIEGLEPNYI------TF--VGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 641 ~g~~~~A~~~~~~m~~~g~~p~~~------t~--~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.|++++|.+++......+..|-.. .| .-...+|.+.|++..|++.|....+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999998877655321 22 3345689999999999988887766
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00041 Score=72.02 Aligned_cols=396 Identities=14% Similarity=0.048 Sum_probs=207.5
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCC-hhHHhHHhhhhhcCCCHH
Q 039792 334 GYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESD-NFVKNSLVDMYAKCDSLT 412 (819)
Q Consensus 334 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 412 (819)
+.+..|+++.|+..|.+..... ++|.+-|+.=..+++..|+++.|.+=-...++ +.|+ ..-|+-+..++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 4567788999999998877642 23777787778888888888877665555444 3444 345666777777778888
Q ss_pred HHHHHHHhcCCC---CcchHHHHHHHHHhcCChhHH-HHHHHHH-HhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHH
Q 039792 413 EARKVFDVMADR---NVVSYNAMIEGYSKEEKLSEA-LDLFHEM-RVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLI 487 (819)
Q Consensus 413 ~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A-~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 487 (819)
+|..-|.+-.+. |...++-+..++ ..+.+ .+.|..- .-.++..+..|-..+- ...+ ..++..+
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~-----~~~~---~~~l~~~ 155 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYSLS-----DPAY---VKILEII 155 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhhhc-----cHHH---HHHHHHh
Confidence 888888776542 344555555554 11111 1111100 0001111111111110 0000 0111111
Q ss_pred HHh----CCccchhhHHHHHHHHHhcCChHHH-HHHHHh-----cCCC---------C-------------eeehhhhHH
Q 039792 488 IKY----GVFLDVFAGSALIDAYSKCFSNKDA-RLVFDE-----MNQR---------D-------------IVVWNAMLL 535 (819)
Q Consensus 488 ~~~----g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~-----~~~~---------~-------------~~~~~~li~ 535 (819)
.+. +...+ ...++.+.......+.- ...-.. +..| . ..-...+.+
T Consensus 156 ~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 156 QKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred hcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 100 00000 00111111110000000 000000 0001 0 011233555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH-------HHHHH
Q 039792 536 GYTQQLENEEAIKLYLELLLSQQRPNEFT-FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSA-------LIDMY 607 (819)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~ 607 (819)
..-+..+++.|++-+....+.. ...| ++..-.++...|.+..+...-...++.|.. ...-++. +..+|
T Consensus 233 aaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhh
Confidence 5666677888888888777643 3444 445555667777777777666666655543 2222222 33467
Q ss_pred HhcCCHHHHHHHHhcCCCC--ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHH
Q 039792 608 AKCGSLEDAYETFGSTTWK--DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLD 684 (819)
Q Consensus 608 ~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~ 684 (819)
.+.++.+.|...|.+...+ +.. ...+....++++...+...- +.|... -...=.+.+.+.|++..|+.
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 7778888888888775411 111 11122334445554444443 445432 23333566777777777777
Q ss_pred HHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 685 HFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 685 ~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.+.+++... +-|...|+.-.-.|.+.+ ++..|..-++..++++|+....|..=+-++....+|++|.+.+++.++.
T Consensus 380 ~YteAIkr~-P~Da~lYsNRAac~~kL~-~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 380 HYTEAIKRD-PEDARLYSNRAACYLKLG-EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHhcC-CchhHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777633 223445655555554433 6667777777778888887777777777777778888888777765543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0046 Score=67.39 Aligned_cols=182 Identities=10% Similarity=0.065 Sum_probs=85.4
Q ss_pred hcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHH
Q 039792 205 KNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAH 284 (819)
Q Consensus 205 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 284 (819)
..|-+++|+.++.+-.. |..|=..|-..|.+++|+++-+.=-+-.+ ..||..-..-+...++.+.|.+.|+.
T Consensus 812 eLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 45667777777664332 34444555666777777776654222111 23444444445555666666665553
Q ss_pred HHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHH
Q 039792 285 VLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACS 364 (819)
Q Consensus 285 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 364 (819)
. |.. --.+...|. .+........+.+.++ ..|.-.-..+-..|+.+.|+.+|...++ |-
T Consensus 884 ~---~~h-afev~rmL~------e~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 884 A---GVH-AFEVFRMLK------EYPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred c---CCh-HHHHHHHHH------hChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 2 110 000111110 1112222222222222 2222233334455666666666666543 34
Q ss_pred HHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhc
Q 039792 365 SVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVM 421 (819)
Q Consensus 365 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (819)
++.+..|-.|+.++|-++-++- -|....-.|.++|-..|++.+|..+|.+.
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4445555556666655554331 13333344555666666666666655443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.4e-06 Score=84.13 Aligned_cols=151 Identities=13% Similarity=0.068 Sum_probs=89.1
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHH----ccCC
Q 039792 603 LIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACS----HAGL 678 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~ 678 (819)
...+|...|++++|.+++.+. .+....-..+..|.+.++++.|.+.++.|.+ +..|. +...+..++. -.+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchh
Confidence 344556667777776666654 3444555566667777777777777777765 44443 2222333222 1235
Q ss_pred HHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCc-hHHHHHH
Q 039792 679 IEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMW-ADAKQVR 756 (819)
Q Consensus 679 ~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~-~~a~~~~ 756 (819)
+.+|..+|+++.+ +| ++....+.+.-+.-..+ +.+.|+...+++++.+|.++.+...++-+....|+. +.+.+.+
T Consensus 183 ~~~A~y~f~El~~~~~--~t~~~lng~A~~~l~~~-~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFG--STPKLLNGLAVCHLQLG-HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT--HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 6777777777665 33 33333333322222111 667777777888888999999999998888888988 6677788
Q ss_pred HHHHh
Q 039792 757 KKMDL 761 (819)
Q Consensus 757 ~~m~~ 761 (819)
.+++.
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 87764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00025 Score=67.63 Aligned_cols=293 Identities=11% Similarity=0.056 Sum_probs=165.1
Q ss_pred CCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--CCcchHHH
Q 039792 354 SGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD--RNVVSYNA 431 (819)
Q Consensus 354 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~ 431 (819)
.|+.....-+.+++..+.+..++..+.+++..-.+.... +....+.|..+|-...++..|...++++.. |...-|..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 344445555666776677777777777776665554321 444556666777777777777777777654 32222221
Q ss_pred -HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcC
Q 039792 432 -MIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCF 510 (819)
Q Consensus 432 -li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 510 (819)
-..++-+.+.+.+|+.+...|.+. |+...-..-+.+.. .-..+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAI---------------------------------kYse~ 126 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAI---------------------------------KYSEG 126 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHH---------------------------------hcccc
Confidence 134555667777777777776542 11111111111110 11234
Q ss_pred ChHHHHHHHHhcC-CCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 039792 511 SNKDARLVFDEMN-QRDIVVWNAMLLGYTQQLENEEAIKLYLELLLS-QQRPNEFTFAALITAASNLGSLKHGQQFHNHL 588 (819)
Q Consensus 511 ~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 588 (819)
++..+..+.+..+ +.+..+.+.......+.|++++|++-|+...+- |..| ...|+..+.. .+.++++.|.....++
T Consensus 127 Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 127 DLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEI 204 (459)
T ss_pred cCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHH
Confidence 4444555555554 233344444444445556666666666655542 3333 3444444433 2345556666655555
Q ss_pred HHhCCCCc----------------------------hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChHhHHHHH
Q 039792 589 IKLGLDFD----------------------------SFITSALIDMYAKCGSLEDAYETFGSTTW-----KDVACWNSMI 635 (819)
Q Consensus 589 ~~~~~~~~----------------------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li 635 (819)
++.|++.. +..+|.-...+-+.|+++.|.+.+-.|++ .|++|...+.
T Consensus 205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A 284 (459)
T KOG4340|consen 205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA 284 (459)
T ss_pred HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH
Confidence 55443211 11222233446688999999999999984 3777776554
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHH
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQS 688 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 688 (819)
-. -..+++.+..+-++-+.+ +.| ...||..++-.|++..-++-|..++.+
T Consensus 285 l~-n~~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 285 LM-NMDARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred Hh-cccCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 22 234556666666666666 567 357999999999999988888777644
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0032 Score=65.53 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHH
Q 039792 543 NEEAIKLYLELLLS-QQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDF-DSFITSALIDMYAKCGSLEDAYETF 620 (819)
Q Consensus 543 ~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 620 (819)
.+...+.++++... ...|+ .+|...++...+..-++.|+.+|.++.+.+..+ ++.++++++.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 45556666666543 23343 567788888888899999999999999987777 88899999998885 6789999999
Q ss_pred hcCC--CCChHh-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHccCCHHHHHHHHHHHHh-cC-
Q 039792 621 GSTT--WKDVAC-WNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHAGLIEDGLDHFQSMAG-FG- 693 (819)
Q Consensus 621 ~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g- 693 (819)
+-.. -+|... -...+.-+..-++-..|..+|++.+..++.||. ..|...|.-=+.-|++..+.++-+++.. +.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 8766 334443 356677777889999999999999998788875 6899999999999999999999988877 65
Q ss_pred -CccCchHHHHHHHHhhc
Q 039792 694 -IEPGMEHYASVVSLLGR 710 (819)
Q Consensus 694 -~~p~~~~y~~li~~l~r 710 (819)
..|...+-..+++.||-
T Consensus 505 ~qe~~~~~~~~~v~RY~~ 522 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGI 522 (656)
T ss_pred hhcCCCChHHHHHHHHhh
Confidence 66666677777787774
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00031 Score=74.78 Aligned_cols=254 Identities=11% Similarity=-0.031 Sum_probs=127.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHH---HHHHhhccCchHhHHHHHHHHHHhCCccc-hhhHHHHHHHHHhcC
Q 039792 435 GYSKEEKLSEALDLFHEMRVGFVPPGLLTFVS---LLGLSSSVFSLESSKQIHGLIIKYGVFLD-VFAGSALIDAYSKCF 510 (819)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~~~~~g 510 (819)
.+...|++++|.+.+++..+.. +.|...+.. ........+....+.+.+.. .....|+ ......+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 4455677777777777765542 222222221 11111112333333333322 1111122 223334445667777
Q ss_pred ChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCChHHHHHH
Q 039792 511 SNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQ-RPNE--FTFAALITAASNLGSLKHGQQF 584 (819)
Q Consensus 511 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~a~~~ 584 (819)
++++|...+++..+ .+...+..+...|...|++++|...+++...... .|+. ..|..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777776654 2344556666677777777777777777665321 1222 2344566666777777777777
Q ss_pred HHHHHHhCCC-CchhHH-H--HHHHHHHhcCCHHHHHHH---Hhc---CCCCChHhH--HHHHHHHHhCCChHHHHHHHH
Q 039792 585 HNHLIKLGLD-FDSFIT-S--ALIDMYAKCGSLEDAYET---FGS---TTWKDVACW--NSMICTNAHHGEPMKALLLFR 652 (819)
Q Consensus 585 ~~~~~~~~~~-~~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~ 652 (819)
++.+....+. +..... + .++..+...|....+.+. ... ........+ .....++...|+.++|..+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7776543321 111111 1 223333334422222221 111 101111122 245566777788888888888
Q ss_pred HHHHcCCC-------CCch-hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 653 EMIIEGLE-------PNYI-TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 653 ~m~~~g~~-------p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+...... +..+ ......-++...|+.++|.+.+.....
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 87653222 1111 122222356678888888888877765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.011 Score=71.88 Aligned_cols=360 Identities=8% Similarity=-0.086 Sum_probs=207.3
Q ss_pred hhhhhcCCCHHHHHHHHHhcCCCCcch--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHh
Q 039792 402 VDMYAKCDSLTEARKVFDVMADRNVVS--YNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLES 479 (819)
Q Consensus 402 i~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 479 (819)
...+...|++.+|..........+... ...........|+++.+...+..+.......+..........+...++.++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 334555677776666655554332111 111122344567777777776665221111122222233344456678888
Q ss_pred HHHHHHHHHHhCCc------cc--hhhHHHHHHHHHhcCChHHHHHHHHhcCC--C--Ce----eehhhhHHHHHhcCCH
Q 039792 480 SKQIHGLIIKYGVF------LD--VFAGSALIDAYSKCFSNKDARLVFDEMNQ--R--DI----VVWNAMLLGYTQQLEN 543 (819)
Q Consensus 480 a~~i~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~----~~~~~li~~~~~~g~~ 543 (819)
+...+....+.--. +. ......+...+...|++++|...+++... + +. ..++.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 88877766543111 11 11222233455678899999888877543 2 11 2334455567778999
Q ss_pred HHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHH----hCCC--C-chhHHHHHHHHHHhcC
Q 039792 544 EEAIKLYLELLLSQQ---RP--NEFTFAALITAASNLGSLKHGQQFHNHLIK----LGLD--F-DSFITSALIDMYAKCG 611 (819)
Q Consensus 544 ~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~g 611 (819)
++|...+.+.....- .+ ...++..+...+...|+++.|...++.... .+.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999998888764211 11 123445556677888999999998887654 2221 1 2233455666777789
Q ss_pred CHHHHHHHHhcCC------CC--ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCchhH-----HHHHHHHHccC
Q 039792 612 SLEDAYETFGSTT------WK--DVACWNSMICTNAHHGEPMKALLLFREMIIEGLE-PNYITF-----VGVLSACSHAG 677 (819)
Q Consensus 612 ~~~~A~~~~~~~~------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~~~g 677 (819)
++++|...+++.. .+ ....+..+...+...|+.++|.+.+++.....-. .....+ ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 9999988887653 11 1234455666778899999999998888652111 111111 11223445578
Q ss_pred CHHHHHHHHHHHHhcCCccCchH----HHHHHHHhhcccchhhhHHHHHHHHHccCC------CCchhHHHHHHHHHhCC
Q 039792 678 LIEDGLDHFQSMAGFGIEPGMEH----YASVVSLLGRNVWNVELGRYAAEMAISIDP------MDSGSYTLLSNTFACNS 747 (819)
Q Consensus 678 ~~~~a~~~~~~m~~~g~~p~~~~----y~~li~~l~r~~w~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~y~~~g 747 (819)
..+.|.+.+........ ..... +..+...+...+ +.+.|...++++++... .....+..++.+|...|
T Consensus 668 ~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 668 DKEAAANWLRQAPKPEF-ANNHFLQGQWRNIARAQILLG-QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CHHHHHHHHHhcCCCCC-ccchhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 99999888777554111 11111 111222222222 66777777787776522 22346778899999999
Q ss_pred CchHHHHHHHHHHhCC
Q 039792 748 MWADAKQVRKKMDLDG 763 (819)
Q Consensus 748 ~~~~a~~~~~~m~~~g 763 (819)
+.++|...+.+..+..
T Consensus 746 ~~~~A~~~L~~Al~la 761 (903)
T PRK04841 746 RKSEAQRVLLEALKLA 761 (903)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887644
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-05 Score=78.92 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=89.4
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCChH
Q 039792 504 DAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAAS----NLGSLK 579 (819)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~g~~~ 579 (819)
.++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ....+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHH
Confidence 4555667777777766654 33444455667777888888888888887753 333 33334444332 223577
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCCh-HHHHHHHHHHH
Q 039792 580 HGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEP-MKALLLFREMI 655 (819)
Q Consensus 580 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 655 (819)
.|..+|+++.+. +.+++.+.+.+..+....|++++|.+++.+.. +.|..+.-.+|......|+. +.+.+++.++.
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 777777776543 44566667777777777777777777666544 23444555556666666665 45556666666
Q ss_pred HcCCCCCc
Q 039792 656 IEGLEPNY 663 (819)
Q Consensus 656 ~~g~~p~~ 663 (819)
. ..|+.
T Consensus 264 ~--~~p~h 269 (290)
T PF04733_consen 264 Q--SNPNH 269 (290)
T ss_dssp H--HTTTS
T ss_pred H--hCCCC
Confidence 5 45553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-05 Score=75.18 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=105.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHH
Q 039792 604 IDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 604 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 682 (819)
+-.|.+.|+++.+....+....+. ..+...++.++++..+++.++ ..|+. ..|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 445777777766544433322111 012235667788888888777 56755 5688888888899999999
Q ss_pred HHHHHHHHh-cCCccCchHHHHHHHHh-hccc-chhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 683 LDHFQSMAG-FGIEPGMEHYASVVSLL-GRNV-WNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 683 ~~~~~~m~~-~g~~p~~~~y~~li~~l-~r~~-w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
...|++..+ .+- +...+..+..++ .+.+ +..+.|..+++++++++|+++.++..|+..+...|++++|...++++
T Consensus 93 ~~a~~~Al~l~P~--~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQLRGE--NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988877 322 333444444432 2221 13588999999999999999999999999999999999999999999
Q ss_pred HhCC
Q 039792 760 DLDG 763 (819)
Q Consensus 760 ~~~g 763 (819)
.+..
T Consensus 171 L~l~ 174 (198)
T PRK10370 171 LDLN 174 (198)
T ss_pred HhhC
Confidence 7643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0005 Score=73.16 Aligned_cols=307 Identities=10% Similarity=-0.071 Sum_probs=149.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhHHHH-HHHHhhccCchHhHHHHHHHHHHhCCccchhhHHH---
Q 039792 427 VSYNAMIEGYSKEEKLSEALDLFHEMRVGF-VPPGLLTFVS-LLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSA--- 501 (819)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~-ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~--- 501 (819)
..|..+...+...|+.+.+...+.+..+.. ..++...... ....+...|+.+.+..+++...+.... +...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHH
Confidence 456666677777788887766666654322 1223222211 122345567777777777777665432 2222221
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCee---ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 039792 502 LIDAYSKCFSNKDARLVFDEMNQRDIV---VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSL 578 (819)
Q Consensus 502 li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 578 (819)
........+..+.+.+.+......+.. ....+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 111112234444455554442221221 22223345566666666666666666542 22334455555566666666
Q ss_pred HHHHHHHHHHHHhCCC-Cch--hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh--HhHH------HHHHHHHhCCChHHH
Q 039792 579 KHGQQFHNHLIKLGLD-FDS--FITSALIDMYAKCGSLEDAYETFGSTTWKDV--ACWN------SMICTNAHHGEPMKA 647 (819)
Q Consensus 579 ~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~------~li~~~~~~g~~~~A 647 (819)
++|..+++...+.... ++. ..+..+...+...|++++|.+++++...++. ..+. .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 6666666666554321 121 2233455666666666666666665431111 1111 122222333332222
Q ss_pred HHHHHHHHHc--CCCCCc-hhH--HHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHH
Q 039792 648 LLLFREMIIE--GLEPNY-ITF--VGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAA 722 (819)
Q Consensus 648 ~~~~~~m~~~--g~~p~~-~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~ 722 (819)
.+. +.+... ...|.. ..+ .....++...|+.++|...++.+......++.
T Consensus 245 ~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~------------------------ 299 (355)
T cd05804 245 DRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADD------------------------ 299 (355)
T ss_pred HHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCc------------------------
Confidence 222 111110 000111 112 23344555566666666666555431111000
Q ss_pred HHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 723 EMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 723 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
....+.........+.++...|++++|.+.+....+.+
T Consensus 300 ---~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 300 ---NKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred ---hhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00011134566788899999999999999998877644
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00017 Score=68.77 Aligned_cols=323 Identities=13% Similarity=0.058 Sum_probs=148.0
Q ss_pred CCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccC--CCcccHHH-
Q 039792 254 DVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV--KNIISWTT- 330 (819)
Q Consensus 254 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~- 330 (819)
|+.....-|.+++..+.+..++..+.+++..-.+... .+....+.|...|....++..|-..++++.. |...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 3333334455555555555666666655554444321 1333444555555555566666655555542 22222221
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCC
Q 039792 331 LIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDS 410 (819)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 410 (819)
-...+.+.+.+.+|+.+...|.+. |+...-..-+.+. ..-..++
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaA---------------------------------IkYse~D 127 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAA---------------------------------IKYSEGD 127 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHH---------------------------------Hhccccc
Confidence 123344555555555555555431 1111111111111 1123345
Q ss_pred HHHHHHHHHhcCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChhHHHHHHHHhhccCchHhHHHHHHHHH
Q 039792 411 LTEARKVFDVMAD-RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVG-FVPPGLLTFVSLLGLSSSVFSLESSKQIHGLII 488 (819)
Q Consensus 411 ~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 488 (819)
+..++.+.++.+. .+..+.+.......+.|+++.|.+-|+...+- |..| ...|+..+.. .+.++...|.....+++
T Consensus 128 l~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 128 LPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEII 205 (459)
T ss_pred CcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHH
Confidence 5555555555552 33333333333344556666666666555442 3332 3344433322 23455555555555555
Q ss_pred HhCCccchhhH----HHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHH
Q 039792 489 KYGVFLDVFAG----SALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLL-SQQRPNEF 563 (819)
Q Consensus 489 ~~g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~ 563 (819)
++|++..+..- .-.++.-.-.+-...+..-+ +..+|.-...+.+.|+++.|.+.+-.|.- ..-..|++
T Consensus 206 eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv 278 (459)
T KOG4340|consen 206 ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV 278 (459)
T ss_pred HhhhhcCCccCccceeccCchhcccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence 55543211110 00000000000000000000 11233333445666777777777766652 22345666
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
|...+.-. -..+++..+.+-+..+...++ ....++..++-.|||..-++-|..++.+-.
T Consensus 279 TLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 279 TLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred hhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 66544322 123345555555555555554 345677777778888888888888876654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.5e-05 Score=76.49 Aligned_cols=49 Identities=8% Similarity=-0.013 Sum_probs=42.9
Q ss_pred hhhhHHHHHHHHHccCCCC---chhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 714 NVELGRYAAEMAISIDPMD---SGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+.+.|...++++++..|++ +..+..++.+|...|++++|...++.+..+
T Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7888888999999987765 478999999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00021 Score=73.06 Aligned_cols=204 Identities=11% Similarity=0.021 Sum_probs=135.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 039792 536 GYTQQLENEEAIKLYLELLLSQQRPNEFT-FAALITAASNLG-SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSL 613 (819)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 613 (819)
.+...++.++|+.+..+.++ +.|+..| |..--.++...| .++++...++.+++.+++ +..+|+....++.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCch
Confidence 34556778888888888876 3555443 444444445556 578888888888887766 555677666566666653
Q ss_pred --HHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHcc---CC----HH
Q 039792 614 --EDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHA---GL----IE 680 (819)
Q Consensus 614 --~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~---g~----~~ 680 (819)
+++.++++++. .+|..+|+.....+...|+++++++.++++++ ..|+ ...|+.....+.+. |. .+
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HCCCchhHHHHHHHHHHhccccccccccHH
Confidence 56777776665 56777888888888888899999999999988 4554 45666666655554 22 24
Q ss_pred HHHHHHHHHHh-cCCccCchHHHHHHHHhhc---ccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC
Q 039792 681 DGLDHFQSMAG-FGIEPGMEHYASVVSLLGR---NVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACN 746 (819)
Q Consensus 681 ~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r---~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 746 (819)
+..++..+++. ..-..+ .|..+-.+|.. ..++...+...+.+++..+|+++.++..|+.+|...
T Consensus 201 ~el~y~~~aI~~~P~N~S--aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 201 SELKYTIDAILANPRNES--PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHHHhCCCCcC--HHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 66777766665 322223 33333333332 112334466777888888898888999999999864
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0012 Score=80.18 Aligned_cols=192 Identities=11% Similarity=-0.008 Sum_probs=116.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC-------CC----eeehhhhHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHH
Q 039792 500 SALIDAYSKCFSNKDARLVFDEMNQ-------RD----IVVWNAMLLGYTQQLENEEAIKLYLELLLS--QQRPN--EFT 564 (819)
Q Consensus 500 ~~li~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t 564 (819)
..+...+...|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...+. ...
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 3444555666666666666554332 11 011223344556668888888777776532 11122 233
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHH-----HHHHHHHHhcCCHHHHHHHHhcCCCCCh-------HhH
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDF-DSFIT-----SALIDMYAKCGSLEDAYETFGSTTWKDV-------ACW 631 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~ 631 (819)
+..+.......|+.+.|...+.......... ....+ ...+..+...|+.+.|.+.+.....+.. ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 4445556677888888888887775431111 11111 1123445568899999998876553221 113
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 632 NSMICTNAHHGEPMKALLLFREMIIE----GLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..+..++...|++++|..++++.... |..++. .+...+..++...|+.++|...+.+..+
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667788899999999999988753 333332 3566667788999999999999999987
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0029 Score=65.99 Aligned_cols=102 Identities=13% Similarity=0.150 Sum_probs=70.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcc--
Q 039792 635 ICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN-- 711 (819)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~-- 711 (819)
...+.+.|++..|+..|.++++ ..|+. ..|.....+|.+.|.+.+|+.-.+...+. .|+ .+.+|-|.
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~------~~kgy~RKg~ 434 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPN------FIKAYLRKGA 434 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--Cch------HHHHHHHHHH
Confidence 4566777888888888888887 44754 56777777888888888887776666552 333 12222221
Q ss_pred ----cchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC
Q 039792 712 ----VWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACN 746 (819)
Q Consensus 712 ----~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 746 (819)
.-+.+.+..+++++++.+|++...-..+...+...
T Consensus 435 al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 01677888888888888888888877777777653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00013 Score=83.41 Aligned_cols=221 Identities=16% Similarity=0.114 Sum_probs=172.4
Q ss_pred CCChhHHHHHHHHhhccCchHhHHHHHHHHHHh-CCc---cchhhHHHHHHHHHhcCChHHHHHHHHhcCCC-C-eeehh
Q 039792 458 PPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY-GVF---LDVFAGSALIDAYSKCFSNKDARLVFDEMNQR-D-IVVWN 531 (819)
Q Consensus 458 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~ 531 (819)
+-+...|..-|......++.+.|+.+.+++.+. ++. --..+|.++++.-..-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 334456667777777888888888888877653 222 23456777777777778888889999988763 3 35678
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhc
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLD-FDSFITSALIDMYAKC 610 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 610 (819)
.|...|.+.+.+++|-++|+.|.++ +.-....|...+..+.+...-+.|..++.++++.-++ -......-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8899999999999999999999976 4456678889999999999999999999998876443 2455666678888899
Q ss_pred CCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHccCCH
Q 039792 611 GSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHAGLI 679 (819)
Q Consensus 611 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~ 679 (819)
|+.+.++.+|+... ++-...|+..|..-.+||+.+.+..+|++.+..++.|-. ..|.-.|..=...|+-
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 99999999999877 556789999999999999999999999999998888854 4566666544444543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0002 Score=73.18 Aligned_cols=186 Identities=13% Similarity=0.067 Sum_probs=137.7
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCCh--HH
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG-SLEDAYETFGSTT---WKDVACWNSMICTNAHHGEP--MK 646 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~ 646 (819)
...+..++|..+...+++..+. +..+|+....++.+.| +++++++.++++. +++..+|+.....+.+.|+. ++
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 3456788999999999988765 5667777777777777 6899999998876 55667888776666666663 77
Q ss_pred HHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCc-cCchHHHH-HHHHh---hcccchhhhHHH
Q 039792 647 ALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIE-PGMEHYAS-VVSLL---GRNVWNVELGRY 720 (819)
Q Consensus 647 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~-p~~~~y~~-li~~l---~r~~w~~~~a~~ 720 (819)
++.+++++++ +.|. ..+|.....++.+.|+++++++.++++++.... +..-++.. ++.-+ ++-.-..+....
T Consensus 127 el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 8999999998 7785 578999999999999999999999999984322 23222222 22222 111001345677
Q ss_pred HHHHHHccCCCCchhHHHHHHHHHhC----CCchHHHHHHHHHHh
Q 039792 721 AAEMAISIDPMDSGSYTLLSNTFACN----SMWADAKQVRKKMDL 761 (819)
Q Consensus 721 ~~~~~~~~~p~~~~~~~~l~~~y~~~----g~~~~a~~~~~~m~~ 761 (819)
...++++++|+|..+|..+..+|... ++..+|.+...+...
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 78899999999999999999999883 455678777776544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2e-05 Score=82.20 Aligned_cols=193 Identities=18% Similarity=0.217 Sum_probs=137.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCCCC---eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC-----C---CHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQRD---IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQR-----P---NEF 563 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p---~~~ 563 (819)
+...|..|....+..++-..|+..+.+..+-| ....-+|.-.|...|.-.+|++.++.-+....+ + +..
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~ 397 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENED 397 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccc
Confidence 45556666666666677777777777776533 344555566788888888888888876543210 0 000
Q ss_pred HHHHHHHHHhccCChHHHHHHH-HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHH
Q 039792 564 TFAALITAASNLGSLKHGQQFH-NHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNA 639 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 639 (819)
+-.. ........+....++| +.....+..+|+.+...|.-.|--.|.+++|...|+... +.|...||-|...++
T Consensus 398 ~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 398 FENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred ccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 0000 1111112233334444 444455656899999999999999999999999999876 457889999999999
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 640 HHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
...+.++|+..|++.++ +.|+.+ ....|.-+|...|.+++|.+.|-..+.
T Consensus 476 N~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred CCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999 999975 566677789999999999999877665
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0039 Score=61.08 Aligned_cols=302 Identities=16% Similarity=0.137 Sum_probs=176.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH---HHHhhccCchHhHHHHHHHHHHhCCccchhhHH-HHHHHHH
Q 039792 432 MIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSL---LGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGS-ALIDAYS 507 (819)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~-~li~~~~ 507 (819)
+-..+...|++.+|+.-|....+. |...|.++ ...|...|.-..|..=+...++. +||-..-. .-...+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 556677788888888888877543 22233332 23445555555555555544443 23321111 1123456
Q ss_pred hcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 039792 508 KCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNH 587 (819)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 587 (819)
+.|.++.|..-|+.+.+.++.- +....++.+ +.+.+++. .....+..+...|+...+......
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~-~~~~eaqsk-------l~~~~e~~---------~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSN-GLVLEAQSK-------LALIQEHW---------VLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCc-chhHHHHHH-------HHhHHHHH---------HHHHHHHHHhcCCchhhHHHHHHH
Confidence 7777777777777665422210 000111111 11111111 122334445567788888888888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch
Q 039792 588 LIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI 664 (819)
Q Consensus 588 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (819)
+++..+ .|...+..-..+|...|.+..|+.=++... ..+....--+-..+..-|+.+.++...++.++ +.||..
T Consensus 181 llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 181 LLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 877653 477777777888888888888876555433 44555555566667777888888888888887 778753
Q ss_pred -hH---HHH-------HH--HHHccCCHHHHHHHHHHHHhcCCccCc--hHHH---HHHHHhhcccchhhhHHHHHHHHH
Q 039792 665 -TF---VGV-------LS--ACSHAGLIEDGLDHFQSMAGFGIEPGM--EHYA---SVVSLLGRNVWNVELGRYAAEMAI 726 (819)
Q Consensus 665 -t~---~~l-------l~--a~~~~g~~~~a~~~~~~m~~~g~~p~~--~~y~---~li~~l~r~~w~~~~a~~~~~~~~ 726 (819)
.| ..| -+ .....+.|-++.+..++..+. .|.. ..|+ .+-..+.... +...|.+...+.+
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~-~~~eAiqqC~evL 334 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDE-QFGEAIQQCKEVL 334 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccC-CHHHHHHHHHHHH
Confidence 22 111 11 233445666666666655542 2331 1121 1111121112 6677888888899
Q ss_pred ccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 727 SIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 727 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+++|+|..++.--+.+|....+|++|..=+++..+.
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 999999999999999999888999998888877663
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00014 Score=78.09 Aligned_cols=227 Identities=11% Similarity=0.006 Sum_probs=155.2
Q ss_pred HHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC--CCeeehhhhHHHHHhcC
Q 039792 464 FVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--RDIVVWNAMLLGYTQQL 541 (819)
Q Consensus 464 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g 541 (819)
-..+...+...|-...|..+++.+. .+.-+|..|+..|+..+|..+...-.+ ||...|..+.+......
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChH
Confidence 3344455555666666666666443 345567777777877777777665443 56667777777766666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 039792 542 ENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFG 621 (819)
Q Consensus 542 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 621 (819)
-+++|+++++..-.. .-..+-....+.++++++.+.++.-.+.++- ...+|-.+.-++.++++++.|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHH
Confidence 677777777654321 1111111123357788888888777766543 56778888888889999999999998
Q ss_pred cCC--CC-ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccC
Q 039792 622 STT--WK-DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPG 697 (819)
Q Consensus 622 ~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~ 697 (819)
... .| +..+||.+-.+|.+.|+-.+|...+++..+.+.. +-..|....-.....|.+++|++.+.++.. .....|
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence 766 44 4568999999999999999999999999986633 334466666667889999999999999987 333335
Q ss_pred chHHHHHHHHh
Q 039792 698 MEHYASVVSLL 708 (819)
Q Consensus 698 ~~~y~~li~~l 708 (819)
..+..-++...
T Consensus 623 ~~vl~~iv~~~ 633 (777)
T KOG1128|consen 623 DEVLLIIVRTV 633 (777)
T ss_pred chhhHHHHHHH
Confidence 55555544433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00011 Score=65.91 Aligned_cols=105 Identities=12% Similarity=0.067 Sum_probs=44.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhcc
Q 039792 634 MICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRN 711 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~ 711 (819)
+...+...|++++|...|++... +.|+. ..|..+..+|...|++++|...|+..... .| +...+..+...+-+.
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHc
Confidence 33344444444444444444444 33432 33444444444444444444444444431 11 111111111111111
Q ss_pred cchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 712 VWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 712 ~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
+ +.+.|...+++++++.|+++..|...+++.
T Consensus 106 g-~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 106 G-EPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred C-CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 1 344444455555666666666666555543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00032 Score=66.66 Aligned_cols=112 Identities=10% Similarity=0.093 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHH-HHhCCC--hHHHHHH
Q 039792 577 SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICT-NAHHGE--PMKALLL 650 (819)
Q Consensus 577 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~-~~~~g~--~~~A~~~ 650 (819)
+.+++...++..++.++. +...|..|...|...|++++|...|++.. +.+...+..+..+ +...|+ .++|.++
T Consensus 54 ~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 334444444444444333 44444555555555555555555554433 2234444444443 234344 3555555
Q ss_pred HHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 651 FREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 651 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+++..+ ..|+. ..+..+..++...|++++|+..|+++.+
T Consensus 133 l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 133 IDKALA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555 44433 3344444455555555555555555544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.3e-06 Score=53.68 Aligned_cols=35 Identities=37% Similarity=0.649 Sum_probs=32.4
Q ss_pred eeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCCh
Q 039792 225 VSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDK 259 (819)
Q Consensus 225 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 259 (819)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00027 Score=70.07 Aligned_cols=179 Identities=12% Similarity=0.042 Sum_probs=106.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhcCC--CCe----eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH-HHHHH
Q 039792 496 VFAGSALIDAYSKCFSNKDARLVFDEMNQ--RDI----VVWNAMLLGYTQQLENEEAIKLYLELLLSQQR-PNE-FTFAA 567 (819)
Q Consensus 496 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~t~~~ 567 (819)
...+-.+...+.+.|++++|...|+++.+ |+. ..+..+..+|...|++++|...|+++.+.... |.. .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 44455566666777777777777776654 221 24455666677777777777777777654211 111 12333
Q ss_pred HHHHHhcc--------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHH
Q 039792 568 LITAASNL--------GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNA 639 (819)
Q Consensus 568 ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 639 (819)
+..++... |+.+.|.+.++.+.+..+. +......+..... ...... .....+...|.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~~----------~~~~~~a~~~~ 177 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRLA----------GKELYVARFYL 177 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHHH----------HHHHHHHHHHH
Confidence 33333332 5566667776666665443 2222222211100 000000 01124566788
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC----chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 640 HHGEPMKALLLFREMIIEGLEPN----YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..|++++|+..+++.++ ..|+ ...+..+..++.+.|++++|..+++.+..
T Consensus 178 ~~g~~~~A~~~~~~al~--~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 178 KRGAYVAAINRFETVVE--NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HcCChHHHHHHHHHHHH--HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999999987 4444 25788899999999999999999988875
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.011 Score=58.02 Aligned_cols=312 Identities=12% Similarity=0.048 Sum_probs=147.1
Q ss_pred HHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHH---HHHcCCChhHHHHHHHHHHHCCCCCCcchHHH-HHHHhcCCc
Q 039792 299 VLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIG---GYMQNSFDREAMKLFTEMTRSGWKPDDFACSS-VLTSCGSVE 374 (819)
Q Consensus 299 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~ 374 (819)
-|-..+...|++.+|+.-|....+-|...|-++.+ .|...|+...|+.=+.+.++ ++||-..-.. --..+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 34445556677778887777777777766666543 56777777777777777665 4565321110 001133445
Q ss_pred chhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039792 375 ALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRV 454 (819)
Q Consensus 375 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 454 (819)
.++.|..-|+.+++...... ....++.+.-..++-. .....+..+...|+...|++....+.+
T Consensus 121 ele~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 55555555544444322110 0000111100001000 011223344455666666666666554
Q ss_pred CCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcC---CCCeeehh
Q 039792 455 GFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMN---QRDIVVWN 531 (819)
Q Consensus 455 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 531 (819)
- .+. |...|..-..+|...|++..|+.-+.... ..+...+-
T Consensus 184 i-~~W-----------------------------------da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y 227 (504)
T KOG0624|consen 184 I-QPW-----------------------------------DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY 227 (504)
T ss_pred c-Ccc-----------------------------------hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH
Confidence 2 222 34444444455555555555544333322 23334444
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG 611 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 611 (819)
-+-..+-..|+.+.++...++-.+ +.||....-.. ...+......+..|. .....+
T Consensus 228 kis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~------YKklkKv~K~les~e----------------~~ie~~ 283 (504)
T KOG0624|consen 228 KISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPF------YKKLKKVVKSLESAE----------------QAIEEK 283 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHH------HHHHHHHHHHHHHHH----------------HHHhhh
Confidence 444455556666666666665554 34544221110 001111111111111 111223
Q ss_pred CHHHHHHHHhcCC--CCC--hH---hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHH
Q 039792 612 SLEDAYETFGSTT--WKD--VA---CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGL 683 (819)
Q Consensus 612 ~~~~A~~~~~~~~--~~~--~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 683 (819)
+|.++.+-.+... .|. .+ .+..+-.+|...|++.+|++...+.++ +.||. .++.--..||.-..++|+|+
T Consensus 284 ~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI 361 (504)
T KOG0624|consen 284 HWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAI 361 (504)
T ss_pred hHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHH
Confidence 3333333333222 111 11 233344555666777777777777766 66663 45666666676667777777
Q ss_pred HHHHHHHh
Q 039792 684 DHFQSMAG 691 (819)
Q Consensus 684 ~~~~~m~~ 691 (819)
.-|+...+
T Consensus 362 ~dye~A~e 369 (504)
T KOG0624|consen 362 HDYEKALE 369 (504)
T ss_pred HHHHHHHh
Confidence 77776665
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00027 Score=75.96 Aligned_cols=217 Identities=13% Similarity=0.144 Sum_probs=167.1
Q ss_pred CccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039792 492 VFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA 571 (819)
Q Consensus 492 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 571 (819)
+.|--..-..+.+.+.++|-...|..+|++.. .|...|.+|...|+..+|..+..+-.+ -+||+..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 34445555678889999999999999999864 688889999999999999999888877 47999999999988
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHH
Q 039792 572 ASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKAL 648 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 648 (819)
.....-+++|.++.+..... .-.++.....+.++++++.+.|+.-. .--..+|-.+..+..+.++.+.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88887888888888765432 11222233344789999999998655 335668999999999999999999
Q ss_pred HHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCc--hHHHHHHHHhhcccchhhhHHHHHHHH
Q 039792 649 LLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGM--EHYASVVSLLGRNVWNVELGRYAAEMA 725 (819)
Q Consensus 649 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~--~~y~~li~~l~r~~w~~~~a~~~~~~~ 725 (819)
+.|..... +.||. ..|+.+-.+|.+.|+-.+|...+.+..+....|-. +.|..+.--.| +.+.+.+++.+.
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvg----e~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVG----EFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcc----cHHHHHHHHHHH
Confidence 99999998 89987 57999999999999999999999999985544432 23333322222 455666666666
Q ss_pred Hcc
Q 039792 726 ISI 728 (819)
Q Consensus 726 ~~~ 728 (819)
+++
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0019 Score=73.78 Aligned_cols=238 Identities=13% Similarity=0.096 Sum_probs=151.4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHH
Q 039792 425 NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALID 504 (819)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 504 (819)
+...|..|+..|...+++++|.++.++-.+. .|+...+ |-.+..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~----------------------------------yy~~G~ 73 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISA----------------------------------LYISGI 73 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceeh----------------------------------HHHHHH
Confidence 4456677777777777777777777754432 3332221 222222
Q ss_pred HHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 039792 505 AYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQF 584 (819)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 584 (819)
.+...++.+++..+ .++..+....++.-...+.+.|.+ ..-+...+..+..+|.+.|+.+++..+
T Consensus 74 l~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~ 138 (906)
T PRK14720 74 LSLSRRPLNDSNLL-------------NLIDSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGV 138 (906)
T ss_pred HHHhhcchhhhhhh-------------hhhhhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHH
Confidence 44444444444332 233334444445334444445554 233445788888999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch
Q 039792 585 HNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI 664 (819)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (819)
++++++..+. |+.+.|-+...|+.. ++++|.+++.+. +..|...+++.++.++|.++.. ..|+.+
T Consensus 139 yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~~~d~ 203 (906)
T PRK14720 139 WERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH--YNSDDF 203 (906)
T ss_pred HHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHh--cCcccc
Confidence 9999998855 899999999999999 999999987663 3447777899999999999998 778765
Q ss_pred h-HHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 665 T-FVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 665 t-~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
. |..++......-....+..++. .+.+-|... -+.+.+...++.+++.+|.|..+..-++..|
T Consensus 204 d~f~~i~~ki~~~~~~~~~~~~~~---------------~l~~~y~~~-~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 204 DFFLRIERKVLGHREFTRLVGLLE---------------DLYEPYKAL-EDWDEVIYILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred hHHHHHHHHHHhhhccchhHHHHH---------------HHHHHHhhh-hhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 4 3444443332211222222221 122222211 1666788888999999999888888888887
Q ss_pred H
Q 039792 744 A 744 (819)
Q Consensus 744 ~ 744 (819)
.
T Consensus 268 ~ 268 (906)
T PRK14720 268 K 268 (906)
T ss_pred H
Confidence 7
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.8e-06 Score=52.86 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY 663 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (819)
+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00087 Score=63.52 Aligned_cols=123 Identities=17% Similarity=0.057 Sum_probs=77.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCC
Q 039792 566 AALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHG 642 (819)
Q Consensus 566 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 642 (819)
..+-..+...|+-+....+......... .|......++....+.|++..|...|.+.. ++|...|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 4444555555666555555555433322 255555666666777777777777776655 456667777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 643 EPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+.++|..-|.+..+ +.|+. ...+.+...+.-.|+.+.|..++.+...
T Consensus 149 r~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 149 RFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777777766 66654 4566666666667777777777666655
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.038 Score=57.91 Aligned_cols=119 Identities=7% Similarity=-0.028 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHcC-CCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhcccchhhhHHHH
Q 039792 644 PMKALLLFREMIIEG-LEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRNVWNVELGRYA 721 (819)
Q Consensus 644 ~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~~w~~~~a~~~ 721 (819)
.+.....++++...- ++| ..+|..+++.-.+..-++.|+.+|.+..+.+..+ .+..+++++.-++.. |.+.|-++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk--D~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK--DKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC--ChhHHHHH
Confidence 555566677766521 222 3467788887777777888899999888866666 777888888888865 88888888
Q ss_pred HHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCc
Q 039792 722 AEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLM 765 (819)
Q Consensus 722 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 765 (819)
++-.+...++++..-.....-+...++-..|..+|++....++.
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 88888888888877777777888888888888888888766443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0015 Score=73.98 Aligned_cols=127 Identities=9% Similarity=0.050 Sum_probs=66.8
Q ss_pred eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 039792 527 IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE-FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALID 605 (819)
Q Consensus 527 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 605 (819)
+..+-.|.....+.|++++|..+++...+ +.|+. .....+...+.+.+.+++|....+...+..+. +......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 34444455555555555555555555554 24433 23344455555555555555555555555443 4444555555
Q ss_pred HHHhcCCHHHHHHHHhcCCC--C-ChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 606 MYAKCGSLEDAYETFGSTTW--K-DVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
++.+.|+.++|.++|++... | +...|..+..++...|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555442 1 134555555555555555555555555554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0028 Score=59.60 Aligned_cols=192 Identities=18% Similarity=0.167 Sum_probs=141.4
Q ss_pred CCHHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 039792 541 LENEEAIKLYLELLL---SQ-QRPNEFT-FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLED 615 (819)
Q Consensus 541 g~~~~A~~~~~~m~~---~g-~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 615 (819)
.+.++.++++.++.. .| ..|+..+ |-.+.-+....|+.+.|...++.+.+.- +-+..+...-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 467888888887763 34 5666654 5567777788899999999999988764 3345554444555667899999
Q ss_pred HHHHHhcCCC---CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 039792 616 AYETFGSTTW---KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGF 692 (819)
Q Consensus 616 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 692 (819)
|.+++++... .|.+++--=+......|+.-+|++-+.+..+. +.-|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll- 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL- 182 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-
Confidence 9999999883 35667777777777888888999988888872 455778999999999999999999999999986
Q ss_pred CCccCchH-HHHHHHHh---hcccchhhhHHHHHHHHHccCCCCchhHH
Q 039792 693 GIEPGMEH-YASVVSLL---GRNVWNVELGRYAAEMAISIDPMDSGSYT 737 (819)
Q Consensus 693 g~~p~~~~-y~~li~~l---~r~~w~~~~a~~~~~~~~~~~p~~~~~~~ 737 (819)
+.|-... +..+.+.+ |-. -|++.+...+++++++.|.+...+.
T Consensus 183 -~~P~n~l~f~rlae~~Yt~gg~-eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 183 -IQPFNPLYFQRLAEVLYTQGGA-ENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred -cCCCcHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhChHhHHHHH
Confidence 3343322 22333332 221 2999999999999999996655443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.4e-05 Score=51.17 Aligned_cols=34 Identities=26% Similarity=0.558 Sum_probs=30.2
Q ss_pred eeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCC
Q 039792 224 AVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVH 257 (819)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 257 (819)
+.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3579999999999999999999999999998887
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00022 Score=63.99 Aligned_cols=87 Identities=11% Similarity=-0.061 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCC
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGL 678 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 678 (819)
+...+...|++++|...|+... +.+...|..+...+...|++++|+..|++..+ +.|+. .++..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHcCC
Confidence 3444444445555544444433 22334444455555555555555555555554 34432 344444445555555
Q ss_pred HHHHHHHHHHHHh
Q 039792 679 IEDGLDHFQSMAG 691 (819)
Q Consensus 679 ~~~a~~~~~~m~~ 691 (819)
.++|...|+...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.4e-05 Score=50.09 Aligned_cols=33 Identities=36% Similarity=0.638 Sum_probs=23.1
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (819)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466777777777777777777777777777666
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0019 Score=61.21 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=109.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-
Q 039792 549 LYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKD- 627 (819)
Q Consensus 549 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 627 (819)
+.+.+.......+......-...|.+.|++++|....... - +....-.=+..+.|..+++-|...+++|..-|
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 4444554444445444445555677888888888776541 1 22333333455667778888888888888543
Q ss_pred hHhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHH
Q 039792 628 VACWNSMICTNAH----HGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYA 702 (819)
Q Consensus 628 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~ 702 (819)
-.+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....+|...|++++|..+++.... ..-.| ++..
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp--etL~ 245 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP--ETLA 245 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH--HHHH
Confidence 3455556555543 34688888888888753 678888888888888888888888888888876 22222 2222
Q ss_pred HH---HHHhhcccchhhhHHHHHHHHHccCCCCc
Q 039792 703 SV---VSLLGRNVWNVELGRYAAEMAISIDPMDS 733 (819)
Q Consensus 703 ~l---i~~l~r~~w~~~~a~~~~~~~~~~~p~~~ 733 (819)
.+ .-..|+ +.+.-.+...++....|+.+
T Consensus 246 Nliv~a~~~Gk---d~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 246 NLIVLALHLGK---DAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHhCC---ChHHHHHHHHHHHhcCCcch
Confidence 22 223343 55666667777777777654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0023 Score=73.76 Aligned_cols=232 Identities=13% Similarity=0.102 Sum_probs=165.0
Q ss_pred CCCc-chHHHHHHHhcCCcchhhHHHHHHHHHHc-CCCC---ChhHHhHHhhhhhcCCCHHHHHHHHHhcCC-CC-cchH
Q 039792 357 KPDD-FACSSVLTSCGSVEALEQGRQVHAYSFKA-NIES---DNFVKNSLVDMYAKCDSLTEARKVFDVMAD-RN-VVSY 429 (819)
Q Consensus 357 ~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~-~~~~ 429 (819)
.||. ..|..-|......++.+.|+++.+++++. ++.- -..+|.+++++-...|.-+...++|++..+ -| ...|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 3543 34455555566777777777777776653 1211 133566777766666777788888888775 22 3467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCc-cchhhHHHHHHHHHh
Q 039792 430 NAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVF-LDVFAGSALIDAYSK 508 (819)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~ 508 (819)
..|...|.+.+.+++|.++|+.|.+. .......|...+..+.+.++-+.|..++....+.-.. -......-.+.+-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 78888888888889999999988765 2355667788888888888888888888887765333 245556667777889
Q ss_pred cCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHH
Q 039792 509 CFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE--FTFAALITAASNLGSLKHGQQ 583 (819)
Q Consensus 509 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~ 583 (819)
+|+.+.++.+|+.... +-...|+..|+.=.++|+.+.+..+|++....++.|-. +.|...|..-...|+-+.++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 9999999999998775 24678999999999999999999999999988887754 445556655556666555555
Q ss_pred HHHHHH
Q 039792 584 FHNHLI 589 (819)
Q Consensus 584 ~~~~~~ 589 (819)
+-.++.
T Consensus 1693 VKarA~ 1698 (1710)
T KOG1070|consen 1693 VKARAK 1698 (1710)
T ss_pred HHHHHH
Confidence 444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0029 Score=65.38 Aligned_cols=152 Identities=16% Similarity=0.141 Sum_probs=93.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 039792 537 YTQQLENEEAIKLYLELLLSQQRPNEFTF-AALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLED 615 (819)
Q Consensus 537 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 615 (819)
+...|.+++|+..++.+... .||...| ......+...++.++|.+.++.+....+. .....-.+.++|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHH
Confidence 44556677777777776654 3444333 34445566777777777777777765443 25555566777777777777
Q ss_pred HHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-
Q 039792 616 AYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG- 691 (819)
Q Consensus 616 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~- 691 (819)
|..++++.. +.|+..|..|..+|...|+..+|..-..++ +...|++++|+..+....+
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHh
Confidence 777776655 446667777777777777777666655443 4446777777777777666
Q ss_pred -cCCccCchHHHHHHHHhh
Q 039792 692 -FGIEPGMEHYASVVSLLG 709 (819)
Q Consensus 692 -~g~~p~~~~y~~li~~l~ 709 (819)
....|+-.-|...|+.+.
T Consensus 455 ~~~~~~~~aR~dari~~~~ 473 (484)
T COG4783 455 VKLGFPDWARADARIDQLR 473 (484)
T ss_pred ccCCcHHHHHHHHHHHHHH
Confidence 234455444444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0025 Score=60.51 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=75.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCC
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGL 678 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 678 (819)
+-..|.-.|+-+.+..+..... ..|....+..+......|++.+|+..|.+... ..|+ ..+|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccC
Confidence 3344444455555444444432 33434444455555556666666666666555 3443 3455555555666666
Q ss_pred HHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHH
Q 039792 679 IEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVR 756 (819)
Q Consensus 679 ~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 756 (819)
.++|..-|.+..+ .+-.|.+..=-.|. .+-+. |.+.|+.....+....+.|..+-..|+-+....|+.++|..+.
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms-~~L~g--d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMS-LLLRG--DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHH-HHHcC--CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666666655555 44444332211111 11122 5555555555555555555555556666666666666655543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0024 Score=73.01 Aligned_cols=189 Identities=12% Similarity=0.073 Sum_probs=100.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASN 574 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 574 (819)
.+-.+..+|.+.|+.++|..+++++.+ .|+...|.+...|... +.++|.+++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444555666666666666666666554 2344555555555555 666666665554432 334
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHH
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREM 654 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 654 (819)
.+++..+.+++..+....+. +...+-.+.+.....-.. ..-+.++--+-..|...+++++++.+++..
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~~-----------~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHREF-----------TRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred hhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhcc-----------chhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 44555666666666555433 333322222222111001 122344555666777778888888888888
Q ss_pred HHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCC
Q 039792 655 IIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMD 732 (819)
Q Consensus 655 ~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~ 732 (819)
++ +.|+ .....-++.+|. +.+.. ...|++..+ .|+.-.-. ++..+..-+++.+..+|++
T Consensus 250 L~--~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~--------------~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 250 LE--HDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRK--------------PVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred Hh--cCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCc--------------cHHHHHHHHHHHeeecCCC
Confidence 87 6664 346666666655 33333 444444444 44443311 4455555566666666655
Q ss_pred c
Q 039792 733 S 733 (819)
Q Consensus 733 ~ 733 (819)
-
T Consensus 311 y 311 (906)
T PRK14720 311 F 311 (906)
T ss_pred E
Confidence 3
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00038 Score=72.61 Aligned_cols=120 Identities=12% Similarity=0.073 Sum_probs=71.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhccc
Q 039792 634 MICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRNV 712 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~~ 712 (819)
|+..+...++++.|+++|+++.+. .|+ ....+...+...++-.+|.+++++.... .| +......-.+.|-+..
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 333444445555555555555542 233 2223444444455555555555555531 11 1111222222221111
Q ss_pred chhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 713 WNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 713 w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
+.+.|...++++.++.|++..+|..|+.+|...|+|++|......+-
T Consensus 249 -~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 -KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66788888999999999999999999999999999999998887663
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00038 Score=62.03 Aligned_cols=109 Identities=13% Similarity=0.090 Sum_probs=74.7
Q ss_pred HHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHcc
Q 039792 650 LFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISI 728 (819)
Q Consensus 650 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~ 728 (819)
.+++.+. ..|+. .....+...+...|++++|.+.|+.....+ ..+...+..+...+.+.+ +.+.|...+++++++
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLK-EYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Confidence 4555554 55644 335555566667777777777777766522 112333444444443322 567777778888889
Q ss_pred CCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 729 DPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 729 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999877653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.002 Score=72.96 Aligned_cols=138 Identities=7% Similarity=-0.002 Sum_probs=89.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHH
Q 039792 594 DFDSFITSALIDMYAKCGSLEDAYETFGSTT--WK-DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGV 669 (819)
Q Consensus 594 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l 669 (819)
..+...+-.|.+.....|+.++|..+++... .| +...+..++..+.+.+++++|+..+++..+ ..|+.. ....+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3356677777777888888888888887766 34 344667777778888888888888888877 677664 45555
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhH
Q 039792 670 LSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSY 736 (819)
Q Consensus 670 l~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~ 736 (819)
..++.+.|++++|..+|++....+ |+ ...+.....++-+.+ +.+.|..+++++++...+-...|
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G-~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRG-ALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhCcchHHH
Confidence 557777888888888888777621 22 222222323332222 56777777777777765444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00072 Score=60.20 Aligned_cols=98 Identities=15% Similarity=0.038 Sum_probs=52.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhC
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHH 641 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 641 (819)
...+...+...|++++|...++.+...++. +...+..+...|.+.|++++|...++... +.+...|..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 334444455556666666666655554432 45555555555555566665555555443 23344455555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCchh
Q 039792 642 GEPMKALLLFREMIIEGLEPNYIT 665 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~~t 665 (819)
|+.++|+..|++..+ +.|+...
T Consensus 99 g~~~~A~~~~~~al~--~~p~~~~ 120 (135)
T TIGR02552 99 GEPESALKALDLAIE--ICGENPE 120 (135)
T ss_pred CCHHHHHHHHHHHHH--hccccch
Confidence 666666666655555 4454443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0052 Score=63.60 Aligned_cols=143 Identities=14% Similarity=0.051 Sum_probs=116.4
Q ss_pred HHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHH
Q 039792 506 YSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN-EFTFAALITAASNLGSLKHG 581 (819)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 581 (819)
+...|+.++|+..++.+.. | |+..+......+...++..+|.+.++++... .|+ ......+-.++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 4456888888888888764 5 4555566678899999999999999999874 666 45566778889999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039792 582 QQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (819)
..+++......+. |+..|..|..+|...|+..+|... ...+|...|++++|+..+....+. +++
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A--------------~AE~~~~~G~~~~A~~~l~~A~~~-~~~ 457 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLA--------------RAEGYALAGRLEQAIIFLMRASQQ-VKL 457 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHH--------------HHHHHHhCCCHHHHHHHHHHHHHh-ccC
Confidence 9999999887765 899999999999999999988764 455788999999999999998875 455
Q ss_pred CchhH
Q 039792 662 NYITF 666 (819)
Q Consensus 662 ~~~t~ 666 (819)
+..+|
T Consensus 458 ~~~~~ 462 (484)
T COG4783 458 GFPDW 462 (484)
T ss_pred CcHHH
Confidence 55443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.15 Score=57.01 Aligned_cols=214 Identities=12% Similarity=0.120 Sum_probs=121.8
Q ss_pred hcCChhHHHHHHhcCCCCC-eeeHHHHHHHH--HhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHH
Q 039792 205 KNGSVDDAKFVFDGLMVKT-AVSWTTIITGY--VKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQI 281 (819)
Q Consensus 205 ~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 281 (819)
..+++..|....+++..+. ...|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...+..+++..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 3456666766666653322 22355555554 5788888888888887665544 777888888888888888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhHhCCChH----HHHHHHhcccCCCcccHHHHHHHHHcC-CCh---------hHHHHH
Q 039792 282 HAHVLRRGMGMDVSVINVLMDFYSKCGRVK----MARRLFDEIEVKNIISWTTLIGGYMQN-SFD---------REAMKL 347 (819)
Q Consensus 282 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~---------~~A~~~ 347 (819)
++...+.. |+......+..+|.+.+.+. .|.++++..+++--.-|+. ++.+.+. ... .-|.+.
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHH
Confidence 88887653 45777777778888877654 4666777655444444443 3333322 111 223344
Q ss_pred HHHHHHCCCCC-CcchHHHHHHHhcCCcchhhHHHHHHH-HHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcC
Q 039792 348 FTEMTRSGWKP-DDFACSSVLTSCGSVEALEQGRQVHAY-SFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMA 422 (819)
Q Consensus 348 ~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~-~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (819)
++.+.+.+-+. +..-...-+..+...+..++|.+++.. ..+.-..-+...-+--++.+.+.+++.+..++-.++.
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444432111 111111112223455667777766632 2222223334444555666666677666655555444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.6e-05 Score=49.40 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=31.0
Q ss_pred HHHHHccCCCCchhHHHHHHHHHhCCCchHHHH
Q 039792 722 AEMAISIDPMDSGSYTLLSNTFACNSMWADAKQ 754 (819)
Q Consensus 722 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 754 (819)
++++++++|+|+.+|..|+++|...|++++|.+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999863
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=5e-05 Score=47.35 Aligned_cols=31 Identities=35% Similarity=0.806 Sum_probs=25.9
Q ss_pred eeHHHHHHHHHhcCCchhHHHHHHHHHHCCC
Q 039792 225 VSWTTIITGYVKSGRSDLSLNLFNQMRETDV 255 (819)
Q Consensus 225 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 255 (819)
++||.||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0013 Score=68.79 Aligned_cols=122 Identities=17% Similarity=0.134 Sum_probs=66.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 039792 501 ALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKH 580 (819)
Q Consensus 501 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 580 (819)
.|+..+...++++.|..+|+++.+.++.....|+..+...++-.+|.+++++.... .+-+...+..-...|.+.++++.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHH
Confidence 34444445566666666666666555555555556666666666666666665543 12233333333444555556666
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 581 GQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 581 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
|..+.+++.+..+. +..+|..|..+|.+.|+++.|...++.++
T Consensus 253 AL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666665555433 44455555666666666666655555554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0019 Score=67.84 Aligned_cols=221 Identities=11% Similarity=0.002 Sum_probs=162.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 039792 536 GYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLED 615 (819)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 615 (819)
-+.+.|+..+|.-.|+..+.+. +-+...|.-|-......++-..|+..+.+..+..+. +....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3678899999999999888763 335677888888888888888999999999888765 77788888888999999999
Q ss_pred HHHHHhcCCCCC-hHhHHHHH--H-------HHHhCCChHHHHHHHHHHH-HcCCCCCchhHHHHHHHHHccCCHHHHHH
Q 039792 616 AYETFGSTTWKD-VACWNSMI--C-------TNAHHGEPMKALLLFREMI-IEGLEPNYITFVGVLSACSHAGLIEDGLD 684 (819)
Q Consensus 616 A~~~~~~~~~~~-~~~~~~li--~-------~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 684 (819)
|.+.++.-.... ...|..-- . .+..........++|-++. +.+..+|......|.-.|.-.|.+++|+.
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999888754111 11111110 0 1111122344555555554 44444677778888888888999999999
Q ss_pred HHHHHHhcCCccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 685 HFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 685 ~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.|+..+. ++|+ ...|+-+--.|.... ..+.|..++.+++++.|.-..+.+.|+-.|...|.|+||.+.+=....
T Consensus 452 cf~~AL~--v~Pnd~~lWNRLGAtLAN~~-~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQ--VKPNDYLLWNRLGATLANGN-RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHh--cCCchHHHHHHhhHHhcCCc-ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9998876 5565 446676666666442 667889999999999999999999999999999999999998776654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.1e-05 Score=46.66 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGL 659 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 659 (819)
+||+|+.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00077 Score=65.67 Aligned_cols=108 Identities=15% Similarity=0.077 Sum_probs=83.8
Q ss_pred CCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcc--cchhhhHHHHHHHHHccCCCCchh
Q 039792 660 EPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRN--VWNVELGRYAAEMAISIDPMDSGS 735 (819)
Q Consensus 660 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~--~w~~~~a~~~~~~~~~~~p~~~~~ 735 (819)
.|+ ...|..|..+|...|+.+.|...|....+ .|-+|+. +..+...+-.+ .-....+..++++++.+||.|..+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~--~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI--LLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 564 46788888888888888888888888887 6666653 22222222211 116778999999999999999999
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCc
Q 039792 736 YTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAG 769 (819)
Q Consensus 736 ~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g 769 (819)
...|+-.+++.|++.+|...++.|.+....-+|.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999999865544343
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0026 Score=56.15 Aligned_cols=98 Identities=6% Similarity=-0.058 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHH
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSAC 673 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 673 (819)
...-.+...+...|++++|..+|+-.. ..+..-|-.|..++...|++++|+..|..... +.||. ..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHH
Confidence 334445666778899999999998766 44677889999999999999999999999998 77865 6889999999
Q ss_pred HccCCHHHHHHHHHHHHh-cCCccC
Q 039792 674 SHAGLIEDGLDHFQSMAG-FGIEPG 697 (819)
Q Consensus 674 ~~~g~~~~a~~~~~~m~~-~g~~p~ 697 (819)
...|+.+.|.+.|+..+. .+-.|.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999999999988 655554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.002 Score=56.87 Aligned_cols=99 Identities=11% Similarity=-0.023 Sum_probs=74.4
Q ss_pred CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHH
Q 039792 625 WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYAS 703 (819)
Q Consensus 625 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~ 703 (819)
..+....-.+..-+...|++++|.++|+-+.. +.|... -|..|..+|-..|++++|+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~------------------- 90 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIY------------------- 90 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHH-------------------
Confidence 33444455566666777888888888888777 777654 45566666666666655554
Q ss_pred HHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 704 VVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 704 li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
++.+++.++|+||.++..++..|...|+.++|.+-|+....
T Consensus 91 -----------------aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 91 -----------------AYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred -----------------HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677788999999999999999999999999999997764
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.018 Score=54.89 Aligned_cols=187 Identities=13% Similarity=-0.014 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHHhccCChHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHH
Q 039792 560 PNEFTFAALITAASNLGSLKHGQ-QFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTN 638 (819)
Q Consensus 560 p~~~t~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 638 (819)
|....+..+-......++.+.-. ++.+.+.......+......-...|+..|++++|.+.......-+....+ ...+
T Consensus 70 ~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~ 147 (299)
T KOG3081|consen 70 TPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQIL 147 (299)
T ss_pred ChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHH
Confidence 33333433333333344433333 34445555444444444444566799999999999999884444443333 3445
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccc
Q 039792 639 AHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH----AGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVW 713 (819)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w 713 (819)
.+..+.+-|.+.+++|++ + -+..|.+.|..++.+ .+++.+|.-+|++|.+ ++..|....=-..+++.-+
T Consensus 148 lk~~r~d~A~~~lk~mq~--i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~--- 221 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQ--I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG--- 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHc--c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc---
Confidence 677789999999999987 3 355677767766554 4679999999999988 7766654443444444433
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHH
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQ 754 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 754 (819)
+.+.|+...+.++..+|+++.+...+.-.--..|.-.++..
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 88999999999999999999998888877777788766544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0044 Score=57.75 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC--CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHH
Q 039792 599 ITSALIDMYAKCGSLEDAYETFGSTT--WKD----VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLS 671 (819)
Q Consensus 599 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 671 (819)
.+..+...|...|++++|...|++.. .++ ...|..+...|...|++++|+..+++..+ +.|+. ..+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 44555555666666666666666544 121 34677778888888888888888888887 66754 45666666
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCC
Q 039792 672 ACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSM 748 (819)
Q Consensus 672 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 748 (819)
++...|+...+..-++.... ..+.|...++++++++|++ |..+...+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~----------------------~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA----------------------LFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH----------------------HHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 77777776666544444322 3466778888999999876 5555555655554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0024 Score=59.13 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=60.1
Q ss_pred CCChHhHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccC----------------CHHHHH
Q 039792 625 WKDVACWNSMICTNAHH-----GEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAG----------------LIEDGL 683 (819)
Q Consensus 625 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------------~~~~a~ 683 (819)
.+|-.+|..++..|.++ |..+=....+..|.+-|+.-|..+|+.||..+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 44445555555555433 555555566667777777777777777776655421 356688
Q ss_pred HHHHHHHhcCCccCchHHHHHHHHhhcc
Q 039792 684 DHFQSMAGFGIEPGMEHYASVVSLLGRN 711 (819)
Q Consensus 684 ~~~~~m~~~g~~p~~~~y~~li~~l~r~ 711 (819)
+++++|..+|+-||.+++..+++.+|+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 8999999999999999999999999976
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0085 Score=53.94 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=11.2
Q ss_pred HHHhccCChHHHHHHHHHHHHhC
Q 039792 570 TAASNLGSLKHGQQFHNHLIKLG 592 (819)
Q Consensus 570 ~~~~~~g~~~~a~~~~~~~~~~~ 592 (819)
..+...|++++|...++.+....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC
Confidence 33444455555555555554443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.047 Score=51.71 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=63.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 039792 538 TQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAY 617 (819)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 617 (819)
-..|++++|+++|+.+.+.. +.|.+++--=+...-..|.--+|.+-+....+. +..|...|.-+.++|...|++++|.
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 34566667777777666554 445555554444444455444555544444443 2336666666666666666666666
Q ss_pred HHHhcCC--CC-ChHhHHHHHHHHHhC---CChHHHHHHHHHHHHcCCCC
Q 039792 618 ETFGSTT--WK-DVACWNSMICTNAHH---GEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 618 ~~~~~~~--~~-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p 661 (819)
-.++++. .| ++..+..+...+... .+.+-|.++|.+.++ +.|
T Consensus 175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~ 222 (289)
T KOG3060|consen 175 FCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNP 222 (289)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hCh
Confidence 6666554 33 333333333332222 234555666666655 444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0025 Score=61.79 Aligned_cols=89 Identities=13% Similarity=0.235 Sum_probs=49.7
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHH
Q 039792 607 YAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 682 (819)
..+.+++++|...|.+.. +.|.+-|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence 445556666666665544 34555555555666666666666666555555 55554 3566666666666666666
Q ss_pred HHHHHHHHhcCCccCch
Q 039792 683 LDHFQSMAGFGIEPGME 699 (819)
Q Consensus 683 ~~~~~~m~~~g~~p~~~ 699 (819)
.+.|++.++ +.|+.+
T Consensus 169 ~~aykKaLe--ldP~Ne 183 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNE 183 (304)
T ss_pred HHHHHhhhc--cCCCcH
Confidence 555555443 344443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0096 Score=53.58 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=86.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCh----HhHHHHHH
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDFD--SFITSALIDMYAKCGSLEDAYETFGSTT--WKDV----ACWNSMIC 636 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~----~~~~~li~ 636 (819)
|..++... ..++...+...++.+.+...... ....-.+...+...|++++|...|+... .+|. ...-.|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344444 47788888888888888654421 2233345678889999999999998877 2333 24555778
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
.+...|++++|+..++..... ......+......+...|++++|+..|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 889999999999999764321 122345667777899999999999998764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.27 Score=50.36 Aligned_cols=106 Identities=16% Similarity=0.269 Sum_probs=81.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGS 577 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 577 (819)
+.+..|.-+...|+...|.++-.+..-|+-.-|-..+.+|+..++|++-.++... +-.++-|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3445566667788889999998888888888899999999999999877765432 2234778888999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 039792 578 LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYET 619 (819)
Q Consensus 578 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 619 (819)
..+|..+... + .+..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHH
Confidence 8888887765 1 124577889999999988765
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.65 Score=52.22 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCChH---HHHHHHHhcCCCCe---eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039792 500 SALIDAYSKCFSNK---DARLVFDEMNQRDI---VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAAS 573 (819)
Q Consensus 500 ~~li~~~~~~g~~~---~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 573 (819)
+.|++++-+.++.. +|+-+++.....+. .+--.+|..|.-.|-+..|.++|+.|--+.+.-|...|.. .+-+.
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~ 518 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAE 518 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHH
Confidence 45566666666544 23333333332222 2223345555555666666666665555445544444322 22233
Q ss_pred ccCChHHHHHHHHHHH
Q 039792 574 NLGSLKHGQQFHNHLI 589 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~ 589 (819)
..|.+..+...+....
T Consensus 519 t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 519 TSGRSSFASNTFNEHL 534 (932)
T ss_pred hcccchhHHHHHHHHH
Confidence 4445555554444433
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00029 Score=59.66 Aligned_cols=36 Identities=53% Similarity=0.956 Sum_probs=27.0
Q ss_pred ceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCcCCCC
Q 039792 769 GRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKGVGYVPNTS 816 (819)
Q Consensus 769 g~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~ 816 (819)
|+||+++ |.|++||++||+.+.++ ++...||.|+++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~--------~~~~~~~~~~~~ 37 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELIN--------KMKEEGYVPDTK 37 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHH--------HHHHcCCcchhh
Confidence 8999988 99999999999994444 444455555543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0044 Score=65.13 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=72.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccc
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVW 713 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w 713 (819)
..+...|++++|+++|++.++ +.|+. ..|..+..+|.+.|++++|+..+++++.. .|+ ...|..+..++...+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg- 84 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE- 84 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC-
Confidence 445567788888888888877 66754 45667777788888888888888777762 232 223333333332222
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACN 746 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 746 (819)
+.+.|...++++++++|+++.....+..+....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 778888889999999999998888876665443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.4 Score=49.14 Aligned_cols=105 Identities=10% Similarity=0.070 Sum_probs=74.7
Q ss_pred HhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCch
Q 039792 398 KNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSL 477 (819)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 477 (819)
.+..|.-+...|+...|.++-.+..-||-.-|-..+.+|+..++|++-..+-.. +-++..|-.++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566778888899988888888888899999999999998877765432 12346777777888777777
Q ss_pred HhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHH
Q 039792 478 ESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLV 518 (819)
Q Consensus 478 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 518 (819)
.+|..+... ..+..-+.+|.++|++.+|.+.
T Consensus 254 ~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPK----------IPDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHH
Confidence 777666654 1224566777777777777544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.47 Score=49.10 Aligned_cols=430 Identities=13% Similarity=0.123 Sum_probs=214.5
Q ss_pred hHhCCChHHHHHHHhcccCC---Cc------ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH--hcC
Q 039792 304 YSKCGRVKMARRLFDEIEVK---NI------ISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTS--CGS 372 (819)
Q Consensus 304 ~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~ 372 (819)
+-+.+++.+|.++|.++... +. +.-+.+|.+|..++ .+.....+....+ ..| ...|..+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~--~~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQ--QFG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHH--hcC-CchHHHHHHHHHHHH
Confidence 34778999999999888643 21 12445666666443 3444444444443 234 4455566665 456
Q ss_pred CcchhhHHHHHHHHHHc--CCCC------------ChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--------CCcchHH
Q 039792 373 VEALEQGRQVHAYSFKA--NIES------------DNFVKNSLVDMYAKCDSLTEARKVFDVMAD--------RNVVSYN 430 (819)
Q Consensus 373 ~~~~~~a~~~~~~~~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~ 430 (819)
.+.+..|.+.+...... +..+ |-..-+..++++...|++.+++.++++|.+ -++.+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 77788888777766544 2221 111223344455555555555555555432 1334444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh---CCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHH
Q 039792 431 AMIEGYSKEEKLSEALDLFHEMRV---GFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYS 507 (819)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~ 507 (819)
-++-.+.+. .|-++.+ ..+-||- |..++-...+....+. ---..+.|.......+++...
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pdy--YemilfY~kki~~~d~-------~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPDY--YEMILFYLKKIHAFDQ-------RPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChHH--HHHHHHHHHHHHHHhh-------chHHhhCcHHHHHHHHHHHHH
Confidence 433333221 2222211 1122221 1111111111000000 000122333333333333332
Q ss_pred hcC-----ChHHHHHHHHhcC-CCCe-eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccC
Q 039792 508 KCF-----SNKDARLVFDEMN-QRDI-VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRP----NEFTFAALITAASNLG 576 (819)
Q Consensus 508 ~~g-----~~~~A~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g 576 (819)
-.- -+-.+.+.++.-- .|+- .....|+..+.+ +.+++..+-+.+....+.+ =..+|..++..+.+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1112222222111 1221 122233333333 4555555544444332222 2357888999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCch-----hHHHHHHHHHHhc----CCHHHHHHHHhcCCCCChHh---HHHHHH---HHHhC
Q 039792 577 SLKHGQQFHNHLIKLGLDFDS-----FITSALIDMYAKC----GSLEDAYETFGSTTWKDVAC---WNSMIC---TNAHH 641 (819)
Q Consensus 577 ~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~---~~~li~---~~~~~ 641 (819)
+...|.+.+..+.-..+.... ..-..+.++.+.. -++.+=..+++.+...|+.. -.-|+. -+-..
T Consensus 313 ~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~ 392 (549)
T PF07079_consen 313 QTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEI 392 (549)
T ss_pred hHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhc
Confidence 999999999888765443221 0112333444421 12333344555555444432 122222 24445
Q ss_pred CC-hHHHHHHHHHHHHcCCCCCch-h----HHHHHHHHHcc---CCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhccc
Q 039792 642 GE-PMKALLLFREMIIEGLEPNYI-T----FVGVLSACSHA---GLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNV 712 (819)
Q Consensus 642 g~-~~~A~~~~~~m~~~g~~p~~~-t----~~~ll~a~~~~---g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~ 712 (819)
|. -++|+.+++..++ +.|.+. . +..+=.+|..+ ..+.+-..+-+-+.+.|+.|-...=.-+.+.+..+-
T Consensus 393 g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 393 GQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred CCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 55 8899999999998 777543 2 22222344433 223333333333444788886443333333333331
Q ss_pred c-----hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 713 W-----NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 713 w-----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
+ ++..+.....=+.+++| ++.+|-+++-......+|+||...+..+
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 1 66677667777788899 8999999999999999999999998743
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0088 Score=51.62 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=63.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHH
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVV 705 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li 705 (819)
++..+...+...|++++|.+.|+++.+ ..|+. ..+..+..++...|++++|..+|+.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------- 67 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLK--KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK-------------- 67 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH--------------
Confidence 455666677777888888888887776 34442 2455566677777777777777666553
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCC---chhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMD---SGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
..|++ +.++..++.+|...|++++|.+.++++.+.
T Consensus 68 ----------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 68 ----------------------KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred ----------------------HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 33332 456667777777777777777777776654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.013 Score=50.52 Aligned_cols=93 Identities=13% Similarity=0.027 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC--CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----chhHH
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT--WKD----VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN----YITFV 667 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~ 667 (819)
.++..++..+.+.|++++|.+.|+.+. .|+ ...+..+...+.+.|++++|+..|+++.. ..|+ ...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK--KYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HCCCCCcccHHHH
Confidence 456678888999999999999999886 333 24667789999999999999999999987 4455 34577
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhc
Q 039792 668 GVLSACSHAGLIEDGLDHFQSMAGF 692 (819)
Q Consensus 668 ~ll~a~~~~g~~~~a~~~~~~m~~~ 692 (819)
.+..++.+.|+.++|...++.+.+.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7788899999999999999998873
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0053 Score=50.08 Aligned_cols=89 Identities=17% Similarity=0.273 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHcc
Q 039792 601 SALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHA 676 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 676 (819)
..+...+...|++++|...|+... +.+...|..+...+...|++++|.+.|++..+ ..|+. .++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHHH
Confidence 344555556666666666666543 22334555666666666777777777776665 33433 3556666666666
Q ss_pred CCHHHHHHHHHHHHh
Q 039792 677 GLIEDGLDHFQSMAG 691 (819)
Q Consensus 677 g~~~~a~~~~~~m~~ 691 (819)
|++++|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 777777666665543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0067 Score=49.60 Aligned_cols=79 Identities=10% Similarity=0.168 Sum_probs=66.4
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHCCC-CCChhhHHHHHHHhhccCC--------hhhHHHHHHHHHHhCCCCchhHHH
Q 039792 228 TTIITGYVKSGRSDLSLNLFNQMRETDV-VHDKYLLSSVLSACSMLQF--------VGGGKQIHAHVLRRGMGMDVSVIN 298 (819)
Q Consensus 228 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~~ 298 (819)
...|..+...|++.....+|+.+++.|+ .|+..+|+.+|.+.++..- +-....+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456677778999999999999999999 9999999999998876532 334677899999999999999999
Q ss_pred HHHHHhHh
Q 039792 299 VLMDFYSK 306 (819)
Q Consensus 299 ~li~~~~~ 306 (819)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0084 Score=63.00 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=60.7
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHH
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALL 649 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 649 (819)
...|+++.|...+..+++..+. +...+..+..+|.+.|++++|...+++.. ..+...|..+..+|...|++++|+.
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455666666666666655443 45555566666666666666666666554 2345566666777777777777777
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHH
Q 039792 650 LFREMIIEGLEPNYITFVGVLSAC 673 (819)
Q Consensus 650 ~~~~m~~~g~~p~~~t~~~ll~a~ 673 (819)
.|++.++ +.|+...+...+..|
T Consensus 92 ~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 92 ALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHH
Confidence 7777776 667665555444433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.46 Score=48.29 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=59.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccCChHHHHHHHHHHHHhC--CCC--chhHHHH
Q 039792 533 MLLGYTQQLENEEAIKLYLELLLSQQR-----PNEF-TFAALITAASNLGSLKHGQQFHNHLIKLG--LDF--DSFITSA 602 (819)
Q Consensus 533 li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~ 602 (819)
+...+.+.|++++|.++|++....... .+.. .|...+-++...|+...|...++...... +.. ...+...
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 456677778888888888877654322 2222 22333335566788888888888776542 322 2345566
Q ss_pred HHHHHHh--cCCHHHHHHHHhcCCCCChHhHHHH
Q 039792 603 LIDMYAK--CGSLEDAYETFGSTTWKDVACWNSM 634 (819)
Q Consensus 603 li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~l 634 (819)
|+++|-. ...+++|..-|+.+.+.|..--+.|
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence 7777754 3467888888888887775443333
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.54 Score=47.57 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=43.1
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC-CCchHHHHHHHHHHhCCCcCCCceeEEE
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACN-SMWADAKQVRKKMDLDGLMKEAGRSWIE 774 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~g~~~~~g~s~i~ 774 (819)
+...++..++.+...+|. .+.|.+|+.+-... |+-.++.+...+... -..+|.++--.
T Consensus 344 e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~--APrdPaW~adg 402 (531)
T COG3898 344 EFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK--APRDPAWTADG 402 (531)
T ss_pred chHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc--CCCCCcccccC
Confidence 777888888999999886 57889999998776 998888888765543 23456655333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0067 Score=49.46 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
+..+...|...|++++|.+.|+... ..+..+|..+...+...|+.++|...+++..+
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 3334444444444444444444322 22333455555555556666666666655554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.017 Score=60.79 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=87.1
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChH
Q 039792 556 SQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL--GLDFDSFITSALIDMYAKCGSLEDAYETFGSTT----WKDVA 629 (819)
Q Consensus 556 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~ 629 (819)
.+.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+++.++++.=. -||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345667777888888888877888888777766653 222233445678888888888888888876533 57888
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHcc
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHA 676 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 676 (819)
++|.|+..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888877777666777776666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0017 Score=51.96 Aligned_cols=79 Identities=18% Similarity=0.327 Sum_probs=59.1
Q ss_pred CCChHHHHHHHHHHHHcCCCC---CchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhh
Q 039792 641 HGEPMKALLLFREMIIEGLEP---NYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVEL 717 (819)
Q Consensus 641 ~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~ 717 (819)
.|++++|+.+++++.+ ..| +...+..+..++.+.|++++|.++++.
T Consensus 2 ~~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~----------------------------- 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK----------------------------- 50 (84)
T ss_dssp TT-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-----------------------------
T ss_pred CccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-----------------------------
Confidence 5788999999999988 445 334455578889999999888888765
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 039792 718 GRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKK 758 (819)
Q Consensus 718 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 758 (819)
.+.+|.++.....++..|.+.|+|++|.+++++
T Consensus 51 --------~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 51 --------LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp --------HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred --------hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 223344556667779999999999999999875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.15 Score=54.68 Aligned_cols=113 Identities=12% Similarity=0.210 Sum_probs=62.3
Q ss_pred cchhhHHHHHHHhcCChhHHHHHHhcCCCCCe--eeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhh
Q 039792 193 VYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTA--VSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACS 270 (819)
Q Consensus 193 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 270 (819)
...+.+=+.-|...|.+++|.++ .-+.+ ..|.-|...-..+=+++-|.+.|.+
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~i----aclgVv~~DW~~LA~~ALeAL~f~~ARkAY~r--------------------- 610 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQI----ACLGVTDTDWRELAMEALEALDFETARKAYIR--------------------- 610 (1081)
T ss_pred cccccccchhhhhccchhhhhcc----cccceecchHHHHHHHHHhhhhhHHHHHHHHH---------------------
Confidence 34444455556667777776643 12222 2355444433333344444444433
Q ss_pred ccCChhhH--HHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHH
Q 039792 271 MLQFVGGG--KQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLF 348 (819)
Q Consensus 271 ~~~~~~~a--~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 348 (819)
.++..-- ..-++.+.+.|-.|+.... ...++-.|++.+|-++|.+ +|....|+++|
T Consensus 611 -VRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmy 668 (1081)
T KOG1538|consen 611 -VRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------SGHENRALEMY 668 (1081)
T ss_pred -HhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHH
Confidence 3332222 2234556667777776543 3445667888888888754 66777788888
Q ss_pred HHHH
Q 039792 349 TEMT 352 (819)
Q Consensus 349 ~~m~ 352 (819)
..|+
T Consensus 669 TDlR 672 (1081)
T KOG1538|consen 669 TDLR 672 (1081)
T ss_pred HHHH
Confidence 7775
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0078 Score=58.43 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=81.5
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---HhHHHHHHHHHhCCChHHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDV---ACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A 647 (819)
-..+.+++++|...|..+++..+. |.+.|.--..+|.+.|.++.|++-.+....-|. .+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 356778899999999999887765 777777788899999999999988888775444 4788899999999999999
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHH
Q 039792 648 LLLFREMIIEGLEPNYITFVGVLS 671 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~~~t~~~ll~ 671 (819)
++.|++.++ +.|+..+|..=|.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHH
Confidence 999999998 9998877765555
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.8 Score=49.82 Aligned_cols=127 Identities=10% Similarity=0.143 Sum_probs=68.5
Q ss_pred CCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC----cchHHHHHHHhcCCcchhhHHHH
Q 039792 307 CGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPD----DFACSSVLTSCGSVEALEQGRQV 382 (819)
Q Consensus 307 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~ 382 (819)
-|.+++|++++-++.++|.. |..+.+.|++-...++++. -|-..| ...++.+-..++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48889999999888887753 4555566666655555433 111111 12344444444444555555555
Q ss_pred HHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 039792 383 HAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHE 451 (819)
Q Consensus 383 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (819)
+..--. ...++.+|.+..++++-+.+-..+++ |....-.|...+.+.|.-++|.+.|-+
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 443211 12344555555555555555555543 333444556666666766666665543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.013 Score=47.98 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=67.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCchhHHHHHHHHHccC--------CHHHHHHHHHHHHhcCCccCchHH
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGL-EPNYITFVGVLSACSHAG--------LIEDGLDHFQSMAGFGIEPGMEHY 701 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~y 701 (819)
-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+-.+.. ++-+.+.+++.|...+++|+.++|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34567777777999999999999999999 899999999999876543 345678899999999999999999
Q ss_pred HHHHHHhhc
Q 039792 702 ASVVSLLGR 710 (819)
Q Consensus 702 ~~li~~l~r 710 (819)
+.++..+-+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.017 Score=53.62 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHhc-----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHH
Q 039792 559 RPNEFTFAALITAASN-----LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNS 633 (819)
Q Consensus 559 ~p~~~t~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 633 (819)
..|..+|..++..+.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 4566667777666643 45666667778888899999999999999998876 4322 11111111
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCH-HHHHHHHHHHHh-cCCcc
Q 039792 634 MICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLI-EDGLDHFQSMAG-FGIEP 696 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~-~g~~p 696 (819)
..- ...+-+-|++++++|...|+.||..|+..|++.+.+.+.. .+..+..--|-+ .++.|
T Consensus 112 -F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP 173 (228)
T PF06239_consen 112 -FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINP 173 (228)
T ss_pred -hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCC
Confidence 111 1234567899999999999999999999999999887753 333333333334 34443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.031 Score=61.43 Aligned_cols=135 Identities=13% Similarity=0.025 Sum_probs=87.5
Q ss_pred CCChHhHHHHHHHHHh--C---CChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHcc--------CCHHHHHHHHHHHH
Q 039792 625 WKDVACWNSMICTNAH--H---GEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHA--------GLIEDGLDHFQSMA 690 (819)
Q Consensus 625 ~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m~ 690 (819)
..|...|...+.+... . ++.++|..+|++.++ ..|+. ..|..+..++... +.+..+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4455666666655432 2 236788899999988 78875 3455444433221 12334444444433
Q ss_pred hc-CCccCchHHHHH-HHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 039792 691 GF-GIEPGMEHYASV-VSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGL 764 (819)
Q Consensus 691 ~~-g~~p~~~~y~~l-i~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 764 (819)
.. ....+...|..+ +..+.+. +.+.|...++++++++| +...|..++.+|...|+.++|.+.+++......
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g--~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKG--KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 31 222233444433 2222332 89999999999999999 578999999999999999999999998866443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.027 Score=56.96 Aligned_cols=138 Identities=13% Similarity=0.078 Sum_probs=78.7
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039792 530 WNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA-ASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYA 608 (819)
Q Consensus 530 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 608 (819)
|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 4455555555555666666666665322 1222333322222 22345566677777777765 3336677777777777
Q ss_pred hcCCHHHHHHHHhcCCC--CC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 039792 609 KCGSLEDAYETFGSTTW--KD----VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLS 671 (819)
Q Consensus 609 ~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 671 (819)
+.|+.+.|+.+|++... +. ...|...+.--.+.|+.+.+.++.+++.+ .-|+...+..+.+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSD 148 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHC
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHH
Confidence 77888888888777652 22 24677777777777777777777777776 4555444333333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0025 Score=48.03 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=44.7
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+.+.|...++++++.+|+++..+..++.+|...|++++|..+++++.+.
T Consensus 12 ~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888899999999999999999999999999999999999999988753
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.052 Score=59.74 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=44.8
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+...|..+...+...|++++|...+++.++ +.|+...|..+...+...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445666666666667777777777777777 557666777777777777777777777766654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.57 Score=47.46 Aligned_cols=186 Identities=15% Similarity=0.065 Sum_probs=129.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH--HHhcCCHHHHHHHHhcCC-CCChH--hHHHHHHHHHhCCChHHHH
Q 039792 574 NLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM--YAKCGSLEDAYETFGSTT-WKDVA--CWNSMICTNAHHGEPMKAL 648 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~-~~~~~--~~~~li~~~~~~g~~~~A~ 648 (819)
-.|+-..|.+.-.+..+. +..|..-...|+.+ -.-.|+.++|.+-|+.|. .|... -...|.-.-.+.|..+.|.
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 355666666655544321 22233333333332 335788999999998887 44333 2334444446678999999
Q ss_pred HHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhccc----chhhhHHHHH
Q 039792 649 LLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNV----WNVELGRYAA 722 (819)
Q Consensus 649 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~----w~~~~a~~~~ 722 (819)
.+-++.-. .-|.. -.+..++...+..|+|+.|+++++.-.. .-+.+++..-.--+-+-.++. -|-..+...+
T Consensus 175 ~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 175 HYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 99888876 67764 5788999999999999999999999888 777777543221111111110 0566778889
Q ss_pred HHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 723 EMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 723 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.++.++.|+-.-.-+.-+..|++.|+..++..+++.+=+.
T Consensus 253 ~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 253 LEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 9999999998888889999999999999999999988543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.035 Score=51.70 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=48.1
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN--EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM 606 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 606 (819)
.+..+...+...|++++|...|++.......+. ...+..+...+.+.|+++.|...+...++..+. +...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 455555556666777777777666665332221 244555555666666666666666666654433 34444455555
Q ss_pred HHhcCCHHHH
Q 039792 607 YAKCGSLEDA 616 (819)
Q Consensus 607 ~~~~g~~~~A 616 (819)
|...|+...+
T Consensus 116 ~~~~g~~~~a 125 (172)
T PRK02603 116 YHKRGEKAEE 125 (172)
T ss_pred HHHcCChHhH
Confidence 5555554433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0052 Score=49.17 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=7.1
Q ss_pred HHHHccCCHHHHHHHHH
Q 039792 671 SACSHAGLIEDGLDHFQ 687 (819)
Q Consensus 671 ~a~~~~g~~~~a~~~~~ 687 (819)
.+|.+.|++++|+++|+
T Consensus 66 ~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHTT-HHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHh
Confidence 34444444444444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.09 Score=49.95 Aligned_cols=137 Identities=12% Similarity=0.092 Sum_probs=98.9
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH-----H
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSA-----L 603 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 603 (819)
.-+.++..+...|.+.-.+..+++.++...+-++.....+.+.-.+.|+.+.|...++...+..-..+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34556677777788888888888888876666777788888888899999999999987776433333333333 3
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHH
Q 039792 604 IDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFV 667 (819)
Q Consensus 604 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 667 (819)
...|.-..++..|...|++++ ..|++.-|.-.-+....|+..+|++..+.|++ ..|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 344566778888888888777 44566666666666667888999999999988 667655444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.02 Score=60.33 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=53.8
Q ss_pred CCChhHHHHHHHHhhccCchHhHHHHHHHHHHh--CCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC----CCeeehh
Q 039792 458 PPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY--GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ----RDIVVWN 531 (819)
Q Consensus 458 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 531 (819)
+.+...+..+++.+....+++.+..++-.+... ....-+.+..++|..|.+.|..+.+..+++.=.. ||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444444444444444444444444332 1111222223444444444444444444443332 4444455
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNL 575 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 575 (819)
.|++.+.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 55555555555555555555555444445555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.58 Score=51.51 Aligned_cols=339 Identities=12% Similarity=0.032 Sum_probs=180.7
Q ss_pred HCCCCCChhhHHH-----HHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCC---hHHHHHHHhcccC-
Q 039792 252 ETDVVHDKYLLSS-----VLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGR---VKMARRLFDEIEV- 322 (819)
Q Consensus 252 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~- 322 (819)
.-|++.+-.-|.. +|+-+...+.+..|.++-..+-..-..- ..++.....-+.+..+ -+-+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4466665555543 4556666677777777766553221111 5667777777776632 3334444444544
Q ss_pred -CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCC----CCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhH
Q 039792 323 -KNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGW----KPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFV 397 (819)
Q Consensus 323 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 397 (819)
...++|..+.+--.+.|+++-|..+++.=...+- -.+..-+...+.-+...|+.+....++-++.+.-.. ..
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~---s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR---SS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---HH
Confidence 4567888888888888998888887765332221 113344555666677777777766666555432110 00
Q ss_pred HhHHhhhhhcCCCHHHHHHHHHhcCC-CCcchHHHHHHHHHhcCChhHHHHHHHH--HHh-CCCCCChhHHHHHHHHhhc
Q 039792 398 KNSLVDMYAKCDSLTEARKVFDVMAD-RNVVSYNAMIEGYSKEEKLSEALDLFHE--MRV-GFVPPGLLTFVSLLGLSSS 473 (819)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~--m~~-~g~~p~~~t~~~ll~~~~~ 473 (819)
+... ..+...|..++.+... .|..+ +-+.| ..++-.+++.-|.. ... .-+.+-.......-++|++
T Consensus 581 l~~~------l~~~p~a~~lY~~~~r~~~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~ 650 (829)
T KOG2280|consen 581 LFMT------LRNQPLALSLYRQFMRHQDRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAK 650 (829)
T ss_pred HHHH------HHhchhhhHHHHHHHHhhchhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhh
Confidence 0000 1122233334433221 11111 11111 12222222221111 000 0011112222333344444
Q ss_pred cCchH-hHHH---------HHHHHH-HhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCC
Q 039792 474 VFSLE-SSKQ---------IHGLII-KYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLE 542 (819)
Q Consensus 474 ~~~~~-~a~~---------i~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 542 (819)
..... +++. +.+.+. +.|......+.+--+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..++
T Consensus 651 sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~k 730 (829)
T KOG2280|consen 651 SKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKK 730 (829)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhh
Confidence 33311 1111 111111 123333334445555666777888888888888888888888778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 039792 543 NEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYET 619 (819)
Q Consensus 543 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 619 (819)
+++-+++-+.+.. +.-|.-+..+|.+.|+.++|..++.+.-.. .-.+.+|.++|++.+|.++
T Consensus 731 weeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 731 WEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHH
Confidence 8877666555431 455666788888888888888877543211 1467788888888888664
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.7 Score=46.96 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=42.8
Q ss_pred ChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CChHHHHHHHHHHH
Q 039792 511 SNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNL-GSLKHGQQFHNHLI 589 (819)
Q Consensus 511 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~ 589 (819)
++++|...++. .+..|...|++..|-..+.++- ..+... |+++.|.+.+....
T Consensus 89 ~~~~Ai~~~~~-----------A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 89 DPDEAIECYEK-----------AIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp THHHHHHHHHH-----------HHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHH
Confidence 55555555544 3456666666666655555443 344455 67777777776655
Q ss_pred Hh----CCCC--chhHHHHHHHHHHhcCCHHHHHHHHhc
Q 039792 590 KL----GLDF--DSFITSALIDMYAKCGSLEDAYETFGS 622 (819)
Q Consensus 590 ~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 622 (819)
+. + .+ -..++..+...+.+.|++++|.++|++
T Consensus 143 ~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 143 ELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 42 1 11 122333445555555666666555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0029 Score=48.24 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=43.3
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.|...++++++.+|+|+.++..|+.+|.+.|++++|.++++++..
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999986654
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.058 Score=51.19 Aligned_cols=163 Identities=11% Similarity=-0.023 Sum_probs=118.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC--ChHh--------HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTTWK--DVAC--------WNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGV 669 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 669 (819)
+++|+..+.-..-+++-...++.-..| .+.. -++++..+.-+|.+.-.+.++.+.++..-+-+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455666665555555555555543322 2223 356777777788899999999999984433355667888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccc----hhhhHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 039792 670 LSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW----NVELGRYAAEMAISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 670 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 745 (819)
.+.-.+.|+.+.|..+|+...+..-.-+..+.+.++..-.+.+. |...+.....+.++.||.++.+-++-+-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88899999999999999988774334444555555543332211 77888888999999999999999988888888
Q ss_pred CCCchHHHHHHHHHHhC
Q 039792 746 NSMWADAKQVRKKMDLD 762 (819)
Q Consensus 746 ~g~~~~a~~~~~~m~~~ 762 (819)
.|+..+|.++.+.|.++
T Consensus 299 lg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999999864
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.034 Score=56.30 Aligned_cols=142 Identities=11% Similarity=0.013 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHhcCC---CCChHhHHHHHHHH
Q 039792 563 FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK-CGSLEDAYETFGSTT---WKDVACWNSMICTN 638 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 638 (819)
.+|..++..+.+.+..+.|+.+|..+.+.+ ..+..+|.....+-.. .++.+.|.++|+.+. ..+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467888888888889999999999998543 2355566666666444 456666999999877 67888999999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCc---hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHh
Q 039792 639 AHHGEPMKALLLFREMIIEGLEPNY---ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLL 708 (819)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l 708 (819)
...|+.+.|..+|++.+.. +.++. ..|...+.-=.+.|+++....+.+++.+. -|+......+++-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 9999999999999999863 33333 37899999888899999999999999872 23344444455544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0067 Score=46.33 Aligned_cols=48 Identities=21% Similarity=0.136 Sum_probs=43.0
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCC-CchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNS-MWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 761 (819)
+.+.|...++++++++|+++.+|..++.+|...| ++++|.+.+++..+
T Consensus 18 ~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 18 DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 6777777888889999999999999999999999 79999999987764
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.021 Score=57.69 Aligned_cols=88 Identities=11% Similarity=0.048 Sum_probs=52.1
Q ss_pred HHccCCHHHHHHHHHHHHh---cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCc
Q 039792 673 CSHAGLIEDGLDHFQSMAG---FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMW 749 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~---~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 749 (819)
..+.|++.+|.+.+.+.+. ....|+...|....-..-|-+ ++..|..-.+.+++++|.-..+|..-++.|...++|
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg-rl~eaisdc~~Al~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG-RLREAISDCNEALKIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC-CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777666653 122222222322211111111 556666677777788777777777778888888888
Q ss_pred hHHHHHHHHHHh
Q 039792 750 ADAKQVRKKMDL 761 (819)
Q Consensus 750 ~~a~~~~~~m~~ 761 (819)
++|.+-+++..+
T Consensus 338 e~AV~d~~~a~q 349 (486)
T KOG0550|consen 338 EEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHh
Confidence 888777666544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.013 Score=44.69 Aligned_cols=63 Identities=19% Similarity=0.330 Sum_probs=52.1
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccC-CHHHHHHHHHHHHh
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAG-LIEDGLDHFQSMAG 691 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g-~~~~a~~~~~~m~~ 691 (819)
+...|..+...+...|++++|+..|++.++ +.|+. ..|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456788888889999999999999999988 67865 56888888888888 68899888887765
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.27 Score=52.75 Aligned_cols=202 Identities=12% Similarity=0.119 Sum_probs=105.7
Q ss_pred HHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHH
Q 039792 184 VIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLS 263 (819)
Q Consensus 184 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 263 (819)
+.+.|-.|+... +...++-.|++.+|-++|. +.|....|+++|.+|+--
T Consensus 626 ~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMF---------- 674 (1081)
T KOG1538|consen 626 RKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMF---------- 674 (1081)
T ss_pred HHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHH----------
Confidence 455666666543 3445666788888888775 466777777777776521
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhH
Q 039792 264 SVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDRE 343 (819)
Q Consensus 264 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 343 (819)
-..+-+...|+-++-+.+.+.-.+ ...++.--.+-..++...|+.++|..+. ..+|-.+-
T Consensus 675 D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~ 734 (1081)
T KOG1538|consen 675 DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDM 734 (1081)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHH
Confidence 122333334444433333221111 0111111122334455566666665543 22333333
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC
Q 039792 344 AMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD 423 (819)
Q Consensus 344 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (819)
++++-+++-. .+..+...+-..+.+...+..|-++|..|-. ..+++++....+++++|..+-++.++
T Consensus 735 lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 735 LIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 3444333322 1333444444445556666677777765532 25678888999999999999998887
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHH
Q 039792 424 RNVVSYNAMIEGYSKEEKLSEALDLF 449 (819)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~ 449 (819)
--...|-.-..-++...++++|.+.|
T Consensus 802 ~~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 802 FKDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred ccccccchHHHHhhhhhhHHHHHHHH
Confidence 22222223333344444444444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.03 Score=51.88 Aligned_cols=94 Identities=12% Similarity=0.052 Sum_probs=56.5
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN--YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVS 706 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 706 (819)
..|..+...+...|++++|+..|++.....-.|. ..++..+...+.+.|++++|...++
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~------------------- 96 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF------------------- 96 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH-------------------
Confidence 4556666666667777777777777765221111 1245566666666666666665554
Q ss_pred HhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHH-------hCCCchHHHHHHHH
Q 039792 707 LLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFA-------CNSMWADAKQVRKK 758 (819)
Q Consensus 707 ~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~-------~~g~~~~a~~~~~~ 758 (819)
++++++|.+...+..++.+|. ..|++++|...+++
T Consensus 97 -----------------~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 97 -----------------QALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred -----------------HHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 444555666666666666666 77887766555543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.069 Score=45.58 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=48.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 633 SMICTNAHHGEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 633 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+..++-..|+.++|+.+|++....|+.... ..+..+.+.+...|++++|..+|++...
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556778889999999999999998877653 4677888899999999999999887765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.55 Score=42.42 Aligned_cols=124 Identities=14% Similarity=0.032 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C---ChHhHHH
Q 039792 559 RPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW--K---DVACWNS 633 (819)
Q Consensus 559 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~ 633 (819)
.|+..--..|..+....|+..+|...+++...--+.-|..+.-.+.++....+++..|...++...+ | .+..--.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555556666666666666666666666554555666666666666666666666666655431 1 1222334
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHH
Q 039792 634 MICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLD 684 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 684 (819)
+...|...|++.+|..-|+.... .-|+...-......+.+.|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666666667777776666 55555443333344455555555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.018 Score=43.26 Aligned_cols=56 Identities=11% Similarity=0.171 Sum_probs=37.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 634 MICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+...+.+.|++++|++.|++.++ ..|+. ..+..+..++.+.|++++|..+|+.+.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556677777777777777776 44654 4566666677777777777777776654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.11 Score=44.39 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=62.6
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHH
Q 039792 533 MLLGYTQQLENEEAIKLYLELLLSQQRPN--EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDF--DSFITSALIDMYA 608 (819)
Q Consensus 533 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~ 608 (819)
+..++-..|+.++|+.+|++....|.... ...+..+-+.+...|++++|..+++......+.. +......+.-.+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34566677888888888888888776654 3356666777788888888888888777654321 1222223344556
Q ss_pred hcCCHHHHHHHHhcCCCCChHhHH
Q 039792 609 KCGSLEDAYETFGSTTWKDVACWN 632 (819)
Q Consensus 609 ~~g~~~~A~~~~~~~~~~~~~~~~ 632 (819)
..|+.++|.+.+-....++...|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ 110 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYR 110 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHH
Confidence 677777777665443333333333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.066 Score=53.17 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=64.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHH
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVV 705 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li 705 (819)
|+.-+.-+.+.|++++|+..|+.+++ ..|+. ..+..+..+|...|++++|...|+.+.+ +...
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---------- 213 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---------- 213 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----------
Confidence 44444444566888899989999888 56765 3677777788888888888888877765 3322
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
|..+.++..++.+|...|++++|.+++++..+
T Consensus 214 ------------------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 214 ------------------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred ------------------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22344555566666667777777777665543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.012 Score=45.52 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=45.5
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
+.+.|...++++++++|+++..+..++.+|...|+|++|.+.+++..+.+
T Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 67788888999999999999999999999999999999999999887643
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.079 Score=49.08 Aligned_cols=79 Identities=9% Similarity=0.052 Sum_probs=44.5
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRP--NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM 606 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 606 (819)
.|..+...+...|++++|+..|++.......| ...++..+-..+...|++++|...++...+.... ....+..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 34455556666677777777777665432222 1235566666666677777777777666654322 23344444444
Q ss_pred HH
Q 039792 607 YA 608 (819)
Q Consensus 607 ~~ 608 (819)
|.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.023 Score=43.15 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=30.5
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 574 NLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
..|++++|..+++.+.+..+. +..+...+..+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666666666666665544 55555566666666666666666666665
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.28 Score=48.26 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=74.8
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhC---CChHHHHHHHHHHHHcCCCCC
Q 039792 589 IKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHH---GEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 589 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~ 662 (819)
...++. |..-|-.|...|...|+.+.|..-|.+.. .+|+..+..+..++... ....++..+|++++. .+|+
T Consensus 149 L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~ 225 (287)
T COG4235 149 LQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPA 225 (287)
T ss_pred HHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCc
Confidence 344444 78888888888888888888888887655 56666666666655433 246778889999988 7887
Q ss_pred chh-HHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 663 YIT-FVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 663 ~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.++ ...|...+...|++.+|...|+.|.+
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 765 45555588899999999999999987
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.78 E-value=1.5 Score=45.00 Aligned_cols=215 Identities=13% Similarity=0.139 Sum_probs=124.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCChHHHHHHHHHHHHhCCCCc-h----------hHHHH
Q 039792 536 GYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA--ASNLGSLKHGQQFHNHLIKLGLDFD-S----------FITSA 602 (819)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~-~----------~~~~~ 602 (819)
++.-.|++++|...--...+. .++ ..+...+++ +...++.+.+...+++.++.++.-. . ..+.-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence 355567777776655544432 111 112222222 2345566777777776665543211 0 01111
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC-------CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTTW-------KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACS 674 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~ 674 (819)
=.+...+.|++.+|.+.+.+... ++...|-.......+.|+.++|+.-.++..+ +.|..+ .|..-..++.
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHH
Confidence 23445678899999999887662 2344566666677788999999998888876 666542 4555556777
Q ss_pred ccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcc---cc-----------hhhhHHHHHHHHHccCCCC-chh---
Q 039792 675 HAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRN---VW-----------NVELGRYAAEMAISIDPMD-SGS--- 735 (819)
Q Consensus 675 ~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~---~w-----------~~~~a~~~~~~~~~~~p~~-~~~--- 735 (819)
..++|++|.+.+++..+..-.+. -.++.-..-.|-++ -| +.+......+.++...|+- +..
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~e 412 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKE 412 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHH
Confidence 78899999999988876322222 22333333333322 22 4445555556666667752 222
Q ss_pred ----HHHHHHHHHhCCCchHHHHH
Q 039792 736 ----YTLLSNTFACNSMWADAKQV 755 (819)
Q Consensus 736 ----~~~l~~~y~~~g~~~~a~~~ 755 (819)
.-..++.|...++..++.+.
T Consensus 413 aE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 413 AEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhhc
Confidence 44577778877777776664
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.4 Score=43.46 Aligned_cols=58 Identities=21% Similarity=0.080 Sum_probs=35.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-HH---HHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 039792 535 LGYTQQLENEEAIKLYLELLLSQQRPNE-FT---FAALITAASNLGSLKHGQQFHNHLIKLGLD 594 (819)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 594 (819)
..+...|++++|.+.|+++...- |+. .. .-.+..++.+.++++.|...++..++..+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 34455677777777777776642 222 11 133445666777777777777777766544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.39 Score=47.33 Aligned_cols=172 Identities=10% Similarity=-0.015 Sum_probs=102.8
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--CCee-e---hhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 039792 502 LIDAYSKCFSNKDARLVFDEMNQ--RDIV-V---WNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASN- 574 (819)
Q Consensus 502 li~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~- 574 (819)
....+.+.|++++|.+.|+.+.. |+.. . .-.+..+|.+.+++++|...|++..+....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445667889999999988875 3321 1 123556788899999999999999875322222333333333321
Q ss_pred -c---------------CC---hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHH
Q 039792 575 -L---------------GS---LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMI 635 (819)
Q Consensus 575 -~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 635 (819)
. .+ ...|...++.+++. |-...-..+|...+..+...=..---...
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01 12333444444443 33333344444333322211000011345
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCC----chhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPN----YITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
.-|.+.|.+..|+.-++.+++ --|+ ......+..+|.+.|..++|..+...+.
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~--~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLR--DYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 568899999999999999997 3454 3457788889999999999988876554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.061 Score=54.35 Aligned_cols=128 Identities=16% Similarity=0.075 Sum_probs=92.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CC--ChH
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIK----LGLD-FDSFITSALIDMYAKCGSLEDAYETFGSTT-------WK--DVA 629 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~--~~~ 629 (819)
.|..|-+.|.-.|+++.|...++.-.. .|-. .....+..|.+++.-.|+++.|.+.++... .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455666666677899999988875432 3322 134566778889999999999999987543 22 234
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH----cC-CCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMII----EG-LEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+.-+|...|.-..++++|+.++++-+. .+ ..-....+.+|..++...|..++|+.+...-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 667788888888899999998877543 11 112335789999999999999999988776655
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.56 E-value=4.7 Score=44.22 Aligned_cols=127 Identities=7% Similarity=-0.026 Sum_probs=67.2
Q ss_pred cCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCC----hhhHHHHHHHhhccCChhhHHHH
Q 039792 206 NGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHD----KYLLSSVLSACSMLQFVGGGKQI 281 (819)
Q Consensus 206 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~ 281 (819)
.|++++|++++-.+..+|.. |..+.+.|++-...++++. .|-..| ...|..+-..++....+++|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999888777653 5666667777666655532 111111 12455555555555555555554
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHH
Q 039792 282 HAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTE 350 (819)
Q Consensus 282 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (819)
+..--. ...++..|.+..++++-+.+-+.+++. ......|...+.+.|.-++|.+.|-+
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHh
Confidence 432211 112344444444444444444444432 23344555566666666666655533
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.16 Score=48.78 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=75.1
Q ss_pred HHHHHhcCC--CCChHhHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccC-----------
Q 039792 616 AYETFGSTT--WKDVACWNSMICTNAHH-----GEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAG----------- 677 (819)
Q Consensus 616 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 677 (819)
.+..|..+. +.|-.+|-+++..+..+ +.++=....++.|.+-|+.-|..+|+.|++.+=+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 56777888887777654 456666677888999999999999999998776544
Q ss_pred -----CHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcc
Q 039792 678 -----LIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN 711 (819)
Q Consensus 678 -----~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~ 711 (819)
.-+-++.++++|..+|+.||.++-..+++.+||.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~ 171 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRW 171 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccc
Confidence 2344789999999999999999999999999997
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.94 Score=41.01 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=77.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHhc---CCccCch-HHHHHH
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAGF---GIEPGME-HYASVV 705 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---g~~p~~~-~y~~li 705 (819)
--.|..+....|+..+|...|++... |+-. |......+.++....++...|...++++-++ +-.|+.. .|+-.+
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 34456666677777777777777764 4443 4456667777777777777777777777662 2334422 233333
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
...| ..+.|+.+++.++.-.|+ +..-...+..+++.|+.++|..-...+-
T Consensus 171 aa~g----~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 171 AAQG----KYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HhcC----CchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3333 345677777777777774 5566666777888887777766554443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.099 Score=47.06 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHh-----cCCccCchH
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAG-----FGIEPGMEH 700 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 700 (819)
...++..+...|++++|+.+++++.. +.| |...|..++.+|...|+..+|.++|+++.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44566667778888888888888887 667 446788888888888888888888777643 577777544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.081 Score=40.77 Aligned_cols=54 Identities=13% Similarity=0.173 Sum_probs=39.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..|.+.+++++|++.+++++. +.|+. ..+.....++.+.|++++|.+.|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456677777888888888777 66754 4566666677777888877777777765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.25 Score=49.11 Aligned_cols=49 Identities=16% Similarity=0.017 Sum_probs=20.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFD--SFITSALIDMYAKCGSLEDAYETFGST 623 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 623 (819)
.|++++|...|+.+++..+... ...+-.+...|...|++++|...|+.+
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v 206 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV 206 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555444444444333211 123333444444444444444444433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.98 E-value=8.2 Score=43.61 Aligned_cols=119 Identities=19% Similarity=0.016 Sum_probs=59.0
Q ss_pred hhHHHHHHHcCCChhhHHHHHhccCCCCcchHHHHH---HHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhc
Q 039792 90 ANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLV---SMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQ 166 (819)
Q Consensus 90 ~~~ll~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 166 (819)
...-|..+.+...++.|..+-..-..+....-+.+. .-+-+.|++++|...|-+-+ .-+.| +.+++-+-.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCCh-----HHHHHHhcC
Confidence 345566666666666666665544332222222222 12456788888888776541 11223 233333322
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCC
Q 039792 167 LGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLM 220 (819)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 220 (819)
..... ..-...+.+.+.|+. +..--+.|++.|.|.++.+.-.+..+...
T Consensus 410 aq~Ik----nLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIK----NLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHH----HHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 22111 111222333455543 33444567777777777777666665544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.62 Score=49.06 Aligned_cols=47 Identities=13% Similarity=-0.044 Sum_probs=30.1
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
+.+.|...++++..++|+.+..|...+++.+-+|+.++|.+..++..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45566666666666666666666666666666666666666666543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.90 E-value=5.8 Score=41.48 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=47.2
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHH
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYAS 703 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~ 703 (819)
+..+|++.++.-.-.-+.+ +.|+..+|..+.-+......+++|+.++.++ +|+...+++
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 3467888888877777766 8999999999999999999999999999764 566655544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.14 Score=53.61 Aligned_cols=95 Identities=16% Similarity=0.063 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCh----HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT--WKDV----ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGV 669 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 669 (819)
+...++.+..+|.+.|++++|...|++.. .|+. .+|..+..+|...|+.++|++.+++.++.+ .| .|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHHHH
Confidence 56778888899999999999999998865 4543 358899999999999999999999998831 11 23222
Q ss_pred HH--HHHccCCHHHHHHHHHHHHhcCC
Q 039792 670 LS--ACSHAGLIEDGLDHFQSMAGFGI 694 (819)
Q Consensus 670 l~--a~~~~g~~~~a~~~~~~m~~~g~ 694 (819)
.. .+......++..++++.+...|.
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 22 12233344567777777777654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.72 Score=45.30 Aligned_cols=123 Identities=11% Similarity=0.010 Sum_probs=85.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccc
Q 039792 635 ICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW 713 (819)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w 713 (819)
.......|+..+|..+|+...+ ..|. ...-..+..+|...|+.+.|..++..+-..--.........-+..+.++.
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa- 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA- 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh-
Confidence 3455677899999999999887 5564 35677778889999999999999887643111111111223345555541
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+... ...++.-+..+|+|...-..|+..|...|+.++|.+.+=.+..
T Consensus 218 ~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 218 ATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred cCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222 2345666778999999999999999999999999997666644
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.47 Score=48.25 Aligned_cols=93 Identities=9% Similarity=0.000 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC---------CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-----Cc
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT---------WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEP-----NY 663 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~ 663 (819)
..|..|.+.|--.|+++.|+..-+.-. ...-..+..+..++.-.|+++.|.+.|+.-...-+.. ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345556666666778888876554211 1122356677788888888888888887754321221 12
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 664 ITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 664 ~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
....+|.+.|.-...+++|+.++.+-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777888887776644
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.59 E-value=9.3 Score=45.04 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=62.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCCh
Q 039792 501 ALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFT--FAALITAASNLGSL 578 (819)
Q Consensus 501 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~ 578 (819)
-..-+|.++|+.++|.+ +|...|++.+|+.+-.+|.. .-|... -..|..-+...++.
T Consensus 957 ~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccc
Confidence 34457778888888854 55567888898888877652 222222 24566667777777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 039792 579 KHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKD 627 (819)
Q Consensus 579 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 627 (819)
-+|-++..+.... | .-.+..|++...+++|.++-......|
T Consensus 1016 ~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1016 YEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred hhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcccch
Confidence 7776666554431 1 224566788888899988776655443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.5 Score=42.44 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=42.3
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.+...+++++..+|-|...|..|..+|...|+..+|.+++++++.
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999988753
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.36 E-value=7.7 Score=40.48 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=66.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhH-HHHHHHHH
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIKLG-LDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVACW-NSMICTNA 639 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~-~~li~~~~ 639 (819)
.|...++...+..-++.|+.+|.++.+.+ ..+++.++++++..++ .|+..-|.++|+-.. -+|...| +-.+.-+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34455555555566666666666666665 4456666666666554 355566666665433 3343333 33444445
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC--chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 640 HHGEPMKALLLFREMIIEGLEPN--YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.-++-+.|..+|+..+++ +.-+ ...|..++.-=+.-|++..+..+=+.|.+
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 556666666666644431 2222 23455555555555555555555554444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.32 E-value=12 Score=42.46 Aligned_cols=120 Identities=10% Similarity=0.048 Sum_probs=75.7
Q ss_pred hhhHHHHHHHhcCChhHHHHHHhcCCCCCeee---HHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 039792 195 VGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVS---WTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSM 271 (819)
Q Consensus 195 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 271 (819)
..-.-++++++..-++.|..+-+.-....... ...-.+-+.+.|++++|...|-+-... +.| ..++.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 34455667777777777777765432211111 112233456789999998887665432 222 234555555
Q ss_pred cCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhccc
Q 039792 272 LQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIE 321 (819)
Q Consensus 272 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 321 (819)
......--..++.+.+.|+. +...-+.|+..|.+.++.+.-.++.+...
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 55555666677777888875 44455778899999999888888777665
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.25 E-value=8 Score=40.29 Aligned_cols=173 Identities=21% Similarity=0.158 Sum_probs=79.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039792 535 LGYTQQLENEEAIKLYLELLLSQ---QRPNEFTFAALITAASN---LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYA 608 (819)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 608 (819)
-+|....+++.-+++.+.|.... +.-....-....-++.+ .|+.++|++++..+....-.+++.++..+...|-
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34555566666666666655421 00011111112223334 6677777777666554444556666655555543
Q ss_pred hcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchh---HHHHHHHHHccCC-HHHHHH
Q 039792 609 KCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYIT---FVGVLSACSHAGL-IEDGLD 684 (819)
Q Consensus 609 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~g~-~~~a~~ 684 (819)
.. |.+....|.. ..++|+..|.+.-+ +.||..+ +.+|+....+.-. -.+..+
T Consensus 229 D~---------~~~s~~~d~~-------------~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~ 284 (374)
T PF13281_consen 229 DL---------FLESNFTDRE-------------SLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRK 284 (374)
T ss_pred HH---------HHHcCccchH-------------HHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHH
Confidence 21 1111111111 15566666666655 5565433 3333333322111 112222
Q ss_pred HH---HHHH-hcCCccCchHHHHHHHHhhcc--cchhhhHHHHHHHHHccCCC
Q 039792 685 HF---QSMA-GFGIEPGMEHYASVVSLLGRN--VWNVELGRYAAEMAISIDPM 731 (819)
Q Consensus 685 ~~---~~m~-~~g~~p~~~~y~~li~~l~r~--~w~~~~a~~~~~~~~~~~p~ 731 (819)
+- ..+. +.|.......|.-....++-. .-|.+.+.+++++++.+.|+
T Consensus 285 i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 285 IGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 22 2222 244444444444433333221 01788888888888888765
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.074 Score=41.67 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCC---C-chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIE--GLEP---N-YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p---~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+++.+...|...|++++|+..|++..+. .+.+ + ..++..+..++...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555666666666666555432 1121 1 23566666677777777777777766543
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.21 E-value=3.2 Score=43.17 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=49.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCC-C--ee----ehhhhHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039792 501 ALIDAYSKCFSNKDARLVFDEMNQR-D--IV----VWNAMLLGYTQ---QLENEEAIKLYLELLLSQQRPNEFTFAALIT 570 (819)
Q Consensus 501 ~li~~~~~~g~~~~A~~~~~~~~~~-~--~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 570 (819)
.++-.|....+++...++.+.+... + .. .-....-++.+ .|+.++|++++..+....-.+++.||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577788888888888888763 1 11 11123445556 7899999999999776667788888887776
Q ss_pred HH
Q 039792 571 AA 572 (819)
Q Consensus 571 ~~ 572 (819)
.+
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 55
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.38 Score=43.00 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=61.8
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHH
Q 039792 607 YAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 682 (819)
+-..|++++|..+|.-.. .-|..-|..|..+|-..+++++|+..|..... +.+ |...+.....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~--l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT--LLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCCCccchHHHHHHHhCCHHHH
Confidence 345678888888877544 34556677788888888888888888888776 444 345677777788888888888
Q ss_pred HHHHHHHHh
Q 039792 683 LDHFQSMAG 691 (819)
Q Consensus 683 ~~~~~~m~~ 691 (819)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888888776
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.092 Score=41.11 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC------C---CC-hHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTT------W---KD-VACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~------~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
..+++.+...|...|++++|.+.|++.. . ++ ..+++.+...|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567888889999999999998887654 1 12 34678888889999999999999888764
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.93 Score=46.54 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=45.2
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+...|.....+.++++|+|.-+++.-+.+|...|+++.|...++++.+
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 667889999999999999999999999999999999999999999875
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.88 E-value=9.5 Score=39.82 Aligned_cols=445 Identities=12% Similarity=0.055 Sum_probs=224.0
Q ss_pred CCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCe---eeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHH
Q 039792 190 DRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTA---VSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVL 266 (819)
Q Consensus 190 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 266 (819)
+-|..+|-.||.-|.-.|..++.++++++|..|-+ .+|..-|++-....+++....+|.+........| .|..-|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ld--LW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD--LWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHh--HHHHHH
Confidence 45677899999999999999999999999977644 4799889888888899999999999887655544 344444
Q ss_pred HHhhccCChhh------HHHHHHHHHH-hCCCC-chhHHHHHHHHhH---hCC------ChHHHHHHHhcccCCCc----
Q 039792 267 SACSMLQFVGG------GKQIHAHVLR-RGMGM-DVSVINVLMDFYS---KCG------RVKMARRLFDEIEVKNI---- 325 (819)
Q Consensus 267 ~~~~~~~~~~~------a~~~~~~~~~-~g~~~-~~~~~~~li~~~~---~~g------~~~~A~~~~~~~~~~~~---- 325 (819)
.-..+....-. --+.++.++. .+++| ....|+..+...- ..| ++|..++.+.++..-..
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 43333332222 2244554444 24444 3344555544332 123 34455555555542111
Q ss_pred ------ccHHHHHHHHHcC---C----ChhHHHHHHHHHHH--CCCCC----CcchHHHHHHHhcCCcchhhHHHHHHHH
Q 039792 326 ------ISWTTLIGGYMQN---S----FDREAMKLFTEMTR--SGWKP----DDFACSSVLTSCGSVEALEQGRQVHAYS 386 (819)
Q Consensus 326 ------~~~~~li~~~~~~---g----~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 386 (819)
..|..=+.-.... | -+-.|...+++... .|++. +..|++-+-+ ..+. .-....+.=
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r----~s~S-~WlNwIkwE 271 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR----TSDS-NWLNWIKWE 271 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc----cccc-hhhhHhhHh
Confidence 1111111111110 1 12345555555532 24332 2223322111 0000 000111111
Q ss_pred HHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 039792 387 FKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLT 463 (819)
Q Consensus 387 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 463 (819)
.+.|+.....+... ...-+|++... -....|----.-+...++-+.|+.....-.. ..|+
T Consensus 272 ~en~l~L~~~~~~q------------Ri~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps--- 334 (660)
T COG5107 272 MENGLKLGGRPHEQ------------RIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS--- 334 (660)
T ss_pred hcCCcccCCCcHHH------------HHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc---
Confidence 12222211111110 01111111111 0112232222333444555555554443211 1122
Q ss_pred HHHHHHHhhc-cCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHh---------cCChHHHHHHHHhcCCCCeeehhhh
Q 039792 464 FVSLLGLSSS-VFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSK---------CFSNKDARLVFDEMNQRDIVVWNAM 533 (819)
Q Consensus 464 ~~~ll~~~~~-~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~l 533 (819)
++..+.-|.. .++-+.+...++.... .|..-|.+ .|+.+...+++-.-...-...|...
T Consensus 335 L~~~lse~yel~nd~e~v~~~fdk~~q-----------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~ 403 (660)
T COG5107 335 LTMFLSEYYELVNDEEAVYGCFDKCTQ-----------DLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVH 403 (660)
T ss_pred hheeHHHHHhhcccHHHHhhhHHHHHH-----------HHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHH
Confidence 2222222222 2222222222221111 01111100 1112211122111112334567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 039792 534 LLGYTQQLENEEAIKLYLELLLSQ-QRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGS 612 (819)
Q Consensus 534 i~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 612 (819)
+..-.+....+.|..+|-+..+.| +.++...++.++.-++ .|+...|..+|+.-...-.. +..--+-.+..+...++
T Consensus 404 ~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~fLi~ind 481 (660)
T COG5107 404 LNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLLFLIRIND 481 (660)
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCc
Confidence 777777777788888888888777 5677777777776554 56777788888766554322 33333556677778888
Q ss_pred HHHHHHHHhcCC---CCC--hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 039792 613 LEDAYETFGSTT---WKD--VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSAC 673 (819)
Q Consensus 613 ~~~A~~~~~~~~---~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 673 (819)
-+.|..+|+... ..+ -..|..||.--..-|+...+..+=++|.+ +-|...+.....+-|
T Consensus 482 e~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 482 EENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 889999998655 223 34788888888888999999888888887 677665444444433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.6 Score=40.34 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHcc
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHA 676 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 676 (819)
..++..++-++++.|+++....++++.-..|+. +-...+. --....+.|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 456667777777777777777766544322110 0000000 111234667778888888888888
Q ss_pred CCHHHHHHHHHHHHh-cCCccCchHHHHHHH
Q 039792 677 GLIEDGLDHFQSMAG-FGIEPGMEHYASVVS 706 (819)
Q Consensus 677 g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~ 706 (819)
|++..|.++++...+ +++.-+...|..|+.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 889999888888888 887766666666654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.65 Score=44.46 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=26.0
Q ss_pred HHhcCCHHHHHHHHhcCC--CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 607 YAKCGSLEDAYETFGSTT--WKD----VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
+...|++++|.+.|+.+. -|+ ..+.-.++.++.+.|++++|...+++.++ ..|+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~ 74 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPN 74 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCC
Confidence 334455555555554443 111 12333455566666666666666666665 3454
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.63 E-value=1.5 Score=42.02 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=29.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCCHHHH
Q 039792 634 MICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a 682 (819)
+..-|.+.|.+..|..-++.+++ --|+. .....++.++.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~--~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE--NYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 34556777777777777777776 34553 2355666677777776643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=1.7 Score=45.96 Aligned_cols=109 Identities=11% Similarity=0.049 Sum_probs=73.4
Q ss_pred ChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHH
Q 039792 643 EPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRY 720 (819)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~ 720 (819)
...+|.++.++..+ +.|+ ......+..+....|+.+.|...|++... ....++...|..++..+.- +.+.|..
T Consensus 319 ~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G---~~~~a~~ 393 (458)
T PRK11906 319 AAQKALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNE---KIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcC---CHHHHHH
Confidence 45567777777777 6664 45666666677777788888888888877 4444444555555554432 6788888
Q ss_pred HHHHHHccCCCCchhHHHHHH--HHHhCCCchHHHHHHH
Q 039792 721 AAEMAISIDPMDSGSYTLLSN--TFACNSMWADAKQVRK 757 (819)
Q Consensus 721 ~~~~~~~~~p~~~~~~~~l~~--~y~~~g~~~~a~~~~~ 757 (819)
..+++++++|.-..+-++--+ +|+.. ..++|.+++-
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 999999999976655554444 45554 4566666653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.16 E-value=1.9 Score=37.72 Aligned_cols=107 Identities=13% Similarity=0.093 Sum_probs=66.1
Q ss_pred HHHhcCCHHHHHHHHhcCCCC------ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHccC
Q 039792 606 MYAKCGSLEDAYETFGSTTWK------DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHAG 677 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g 677 (819)
...+.|++++|.+.|+.+... ....--.|+.+|.+.|++++|+..+++.++ +.|+. +-|...+.+++.-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHHHHHHH
Confidence 344567777777777766521 122444578888888999999999999988 77764 45777777766544
Q ss_pred CHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCc
Q 039792 678 LIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDS 733 (819)
Q Consensus 678 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~ 733 (819)
..+. .|..+. +..-|.. ....|...+++++..-|++.
T Consensus 97 ~~~~---~~~~~~--~~drD~~--------------~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEG---SLQSFF--RSDRDPT--------------PARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred Hhhh---HHhhhc--ccccCcH--------------HHHHHHHHHHHHHHHCcCCh
Confidence 3332 222222 1211111 44566667788888888653
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.13 E-value=8.7 Score=37.05 Aligned_cols=196 Identities=16% Similarity=0.093 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh-HhHHHHHH-H
Q 039792 563 FTFAALITAASNLGSLKHGQQFHNHLIKL-GLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW--KDV-ACWNSMIC-T 637 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~ 637 (819)
..+......+...+.+..+...+...... ........+..+...+...+....+.+.+..... ++. ..+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444444555555555555555444431 1222344444455555555556666665554442 111 22222222 5
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC----chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccc
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPN----YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVW 713 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w 713 (819)
+...|+++.|...+++... ..|. ...+......+...++.+++...+..............+..+...+....
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 216 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG- 216 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc-
Confidence 6666677777777666644 3331 12333333345566667777766666665211101222333333332221
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.+......+++..|.....+..++..+...|.++++...+.+..+
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356666666777777766556666666666666667777766665543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.17 Score=32.50 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 735 SYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 735 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
+|..|+++|...|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999854
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.65 Score=48.83 Aligned_cols=67 Identities=10% Similarity=-0.081 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 039792 559 RPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDS--FITSALIDMYAKCGSLEDAYETFGSTTW 625 (819)
Q Consensus 559 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~ 625 (819)
+.+...+..+-.++...|++++|...++..++.++.... ..|..+..+|.+.|+.++|.+.+++...
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446678889999999999999999999999987655221 3588899999999999999999888664
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.95 E-value=1.8 Score=36.64 Aligned_cols=87 Identities=20% Similarity=0.198 Sum_probs=62.1
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCC
Q 039792 606 MYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGL 678 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~ 678 (819)
+++..|+++.|++.|.+.. +.+...||.-..++.-.|+.++|+.-+++.++.. .|.. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-g~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA-GDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHHHhCc
Confidence 4567788888888887654 5577788888888888888888888888887621 1111 235555556777888
Q ss_pred HHHHHHHHHHHHhcC
Q 039792 679 IEDGLDHFQSMAGFG 693 (819)
Q Consensus 679 ~~~a~~~~~~m~~~g 693 (819)
.|.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888887776544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.90 E-value=7.6 Score=39.31 Aligned_cols=161 Identities=12% Similarity=0.062 Sum_probs=95.9
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHH-CCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHhC-----CCCchhHH
Q 039792 530 WNAMLLGYTQQLENEEAIKLYLELLL-SQQRPN---EFTFAALITAASNLGSLKHGQQFHNHLIKLG-----LDFDSFIT 600 (819)
Q Consensus 530 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~ 600 (819)
|-.+..++-+.-++.+++.+-+.-.. .|..|. .....++-.+....+.++.+.+.|+...+.- ......++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 33344444444444555444333221 222221 1223345556666677888888887776532 12245678
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcC-------CCCChH------hHHHHHHHHHhCCChHHHHHHHHHHHH----cCCCCCc
Q 039792 601 SALIDMYAKCGSLEDAYETFGST-------TWKDVA------CWNSMICTNAHHGEPMKALLLFREMII----EGLEPNY 663 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~ 663 (819)
.+|...|.+..+.++|.-+..+. .-.|.. +.-.|..++...|....|.+..++..+ .|-.|-.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 88999999988888876554432 223432 223466778888888888888877654 3333322
Q ss_pred -hhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 664 -ITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 664 -~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
.....+...|...|+.|.|+.-+++..
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 235566778889999999887777654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.75 E-value=20 Score=40.20 Aligned_cols=304 Identities=11% Similarity=-0.001 Sum_probs=152.2
Q ss_pred HHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCC---CHHHHHHHHHhcCC--CCcchHHHHHHHHHhcC
Q 039792 366 VLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCD---SLTEARKVFDVMAD--RNVVSYNAMIEGYSKEE 440 (819)
Q Consensus 366 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g 440 (819)
+|+-+...+.+..|.++-..+...-..- ..++.....-+.+.. +-+-+..+-+++.. .+.++|..+..--.+.|
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 3444555556666666555443211111 344555555554442 22333444444444 45567777777666778
Q ss_pred ChhHHHHHHHHHHhCCCC----CChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHH
Q 039792 441 KLSEALDLFHEMRVGFVP----PGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDAR 516 (819)
Q Consensus 441 ~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 516 (819)
+.+-|..+++.=...+.. .+..-+...+.-+...|+.+...+++-.+...-... . .+.-..+...|.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s---~------l~~~l~~~p~a~ 592 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS---S------LFMTLRNQPLAL 592 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH---H------HHHHHHhchhhh
Confidence 887777776652221110 122234445555666666666666555544321000 0 000011122233
Q ss_pred HHHHhcCC-CCeeehhhhHHHHHhcCCHHHHHHHH--HHHHH-CCCCCCHHHHHHHHHHHhccCChHHHHH---------
Q 039792 517 LVFDEMNQ-RDIVVWNAMLLGYTQQLENEEAIKLY--LELLL-SQQRPNEFTFAALITAASNLGSLKHGQQ--------- 583 (819)
Q Consensus 517 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~--------- 583 (819)
.+|....+ .|.. .+-+.|-+..+. +++..| +.... .-+.+-.......-.+|++.....-..+
T Consensus 593 ~lY~~~~r~~~~~---~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl 668 (829)
T KOG2280|consen 593 SLYRQFMRHQDRA---TLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLL 668 (829)
T ss_pred HHHHHHHHhhchh---hhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 33332211 1110 011112222222 222211 11000 0012222223334445554443221111
Q ss_pred -HHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039792 584 -FHNHLI-KLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 584 -~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (819)
+.+.+. +.|.....-+.+--+.-+...|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+.
T Consensus 669 ~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------ 742 (829)
T KOG2280|consen 669 KLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------ 742 (829)
T ss_pred HHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------
Confidence 111111 233333334455556667788999999999999999998888888889999998887666655442
Q ss_pred CchhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 662 NYITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 662 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
..+-|.-...+|.+.|+.+||.+++.+.
T Consensus 743 sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 743 SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 2556777888999999999999987654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.4 Score=42.88 Aligned_cols=100 Identities=18% Similarity=0.148 Sum_probs=62.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCc-hHHHHH
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGM-EHYASV 704 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~-~~y~~l 704 (819)
|+.-+. +.+.|++..|...|...++ --|+. ..+.-|..++...|++++|..+|..+.+ ++-.|.. +.+--+
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 554443 3455668888888888887 34542 3466777788888888888888888877 6655543 333333
Q ss_pred HHHhhcccchhhhHHHHHHHHHccCCCCch
Q 039792 705 VSLLGRNVWNVELGRYAAEMAISIDPMDSG 734 (819)
Q Consensus 705 i~~l~r~~w~~~~a~~~~~~~~~~~p~~~~ 734 (819)
...+++.. +.+.|...++++++-.|+.+.
T Consensus 222 g~~~~~l~-~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 222 GVSLGRLG-NTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHHCCCCHH
Confidence 33333332 556666666666666665443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.3 Score=44.01 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=62.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcc----cchhh
Q 039792 641 HGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN----VWNVE 716 (819)
Q Consensus 641 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~----~w~~~ 716 (819)
+|+..+|-..++++++. .+.|-..+...-.+|...|+.+.-...++++.. .-.|+...|..+-.+|.=. + -++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip-~wn~dlp~~sYv~GmyaFgL~E~g-~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP-KWNADLPCYSYVHGMYAFGLEECG-IYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc-ccCCCCcHHHHHHHHHHhhHHHhc-cch
Confidence 35555555566666551 222445555555566666666655555555542 1234554454444433311 1 455
Q ss_pred hHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHH
Q 039792 717 LGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRK 757 (819)
Q Consensus 717 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 757 (819)
.|+..++++++++|.|.-+...++.++-.+|+..|+.+...
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 66666666666666666666666666666666666665543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=1.3 Score=39.67 Aligned_cols=48 Identities=10% Similarity=-0.066 Sum_probs=36.5
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.|...+..+..++++||.++...+.-|...|+.++|..-++...+
T Consensus 86 ~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 86 QFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 444555555566677788888888899999999999999888876654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.71 Score=39.88 Aligned_cols=50 Identities=8% Similarity=0.123 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-hCCCCchhHHHHHHHH
Q 039792 557 QQRPNEFTFAALITAASNLGSLKHGQQFHNHLIK-LGLDFDSFITSALIDM 606 (819)
Q Consensus 557 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~ 606 (819)
...|+..++.+++.+++..+++..|.++.+...+ .+++.+..+|..|++-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4567777777777777777777777777776654 4555556666666553
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.12 E-value=4.3 Score=44.47 Aligned_cols=157 Identities=14% Similarity=0.099 Sum_probs=98.9
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLSQ-QRPNE-----FTFAALITAASN----LGSLKHGQQFHNHLIKLGLDFDSFITS 601 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 601 (819)
.++....-.|+-+.+++.+.+-.+.+ +.-.. .+|..++..+.. ....+.+.+++..+.+.-+ +...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP--~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP--NSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC--CcHHHH
Confidence 34444555566666766666544321 21111 224444443332 4577888999998887643 444443
Q ss_pred -HHHHHHHhcCCHHHHHHHHhcCCC-------CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHH-
Q 039792 602 -ALIDMYAKCGSLEDAYETFGSTTW-------KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSA- 672 (819)
Q Consensus 602 -~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a- 672 (819)
--...+...|++++|.+.|++... -....+--+...+...+++++|.+.|.++.+.. .-+..+|..+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 345677889999999999996552 122344556677888899999999999999832 2234455555443
Q ss_pred HHccCCH-------HHHHHHHHHHHh
Q 039792 673 CSHAGLI-------EDGLDHFQSMAG 691 (819)
Q Consensus 673 ~~~~g~~-------~~a~~~~~~m~~ 691 (819)
+...|+. ++|.++|.+...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4457777 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.09 E-value=3.8 Score=36.33 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=39.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHH
Q 039792 567 ALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMK 646 (819)
Q Consensus 567 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 646 (819)
.++..+...+.......+++.+.+.+. .+....+.++..|++.+ .++..+.++. ..+.......+..|.+++.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 344444455556666666666665553 45566666666666543 2333344331 1122222334444444444444
Q ss_pred HHHHHHH
Q 039792 647 ALLLFRE 653 (819)
Q Consensus 647 A~~~~~~ 653 (819)
+.-++.+
T Consensus 88 ~~~l~~k 94 (140)
T smart00299 88 AVELYKK 94 (140)
T ss_pred HHHHHHh
Confidence 4444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.26 Score=33.33 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHH
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLS 740 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 740 (819)
+.+.|+..++++++.+|+|+..+..|+
T Consensus 16 ~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 16 QPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 334444444444455555555554443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.95 Score=43.78 Aligned_cols=110 Identities=12% Similarity=0.192 Sum_probs=78.3
Q ss_pred HHHHHHhcCC--CCCeeeHHHHHHHHHhc-----CCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC---------
Q 039792 211 DAKFVFDGLM--VKTAVSWTTIITGYVKS-----GRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQF--------- 274 (819)
Q Consensus 211 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--------- 274 (819)
..+..|...+ ++|..+|-+++..+... +.++-....++.|++-|+.-|..+|+.||+.+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 66788888888877653 5566677778899999999999999999998765432
Q ss_pred -------hhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCCh-HHHHHHHhcc
Q 039792 275 -------VGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRV-KMARRLFDEI 320 (819)
Q Consensus 275 -------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 320 (819)
-+-+..+++.|...|+-||..+-..|++++.+.+-. .+..++.-.|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 123567888888888888888888888887776542 3333443334
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.90 E-value=9.3 Score=37.11 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=70.4
Q ss_pred HhcCCHHHHHHHHhcCCCC---C---hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHcc---
Q 039792 608 AKCGSLEDAYETFGSTTWK---D---VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHA--- 676 (819)
Q Consensus 608 ~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~--- 676 (819)
.+.|++++|.+.|+.+... + ..+--.++.++-+.+++++|+..+++... ..|+. .-|...+.+++.-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~--lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR--LYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCCChhHHHHHHHHHHhccC
Confidence 3556777777777666521 1 12333456667778888888888888877 55543 3455555544422
Q ss_pred ----CCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchH
Q 039792 677 ----GLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWAD 751 (819)
Q Consensus 677 ----g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 751 (819)
.+...+...+..+.+ -.--|+. +=+..+..+...+.-.=++.-...++.|.+.|.|..
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS-----------------~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNS-----------------RYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCC-----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 222333333333332 1111211 111111111111111112233456778888888888
Q ss_pred HHHHHHHHHhC
Q 039792 752 AKQVRKKMDLD 762 (819)
Q Consensus 752 a~~~~~~m~~~ 762 (819)
|..-+++|.+.
T Consensus 186 A~nR~~~v~e~ 196 (254)
T COG4105 186 AINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHhc
Confidence 88888888764
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.89 E-value=17 Score=38.29 Aligned_cols=32 Identities=9% Similarity=-0.131 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 745 (819)
+.+.....++.+.++.|.....|..++..+..
T Consensus 273 ~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 273 SSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 45667778888999999888888888877654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.57 E-value=16 Score=36.36 Aligned_cols=117 Identities=11% Similarity=0.109 Sum_probs=81.6
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChHhHH---HHHHHHHhCCChHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWK-DVACWN---SMICTNAHHGEPMK 646 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~---~li~~~~~~g~~~~ 646 (819)
.....|++..+..+++.......+ +....-.++.+|...|+.+.|..++..++.. ...-|. .-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 456788999999999999887655 4666777999999999999999999998832 222222 22334444444444
Q ss_pred HHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 647 ALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 647 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
...+-.+.-. .|+. ..-..+...+...|+.++|.+.+-.+.+
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444443 6754 4556677788999999999988776665
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.22 E-value=2.1 Score=44.14 Aligned_cols=95 Identities=11% Similarity=0.118 Sum_probs=54.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 039792 666 FVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 666 ~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 745 (819)
+..|..+|.+.+.+.+|++..++.+..+-..-.-.|..=--.+.-. +++.|+..++++++++|.|-.+-..|+.+--+
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~--e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALG--EYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhc--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4444555555555555555555555422111111111110111111 67777777888888888888888888877776
Q ss_pred CCCchHH-HHHHHHHHhC
Q 039792 746 NSMWADA-KQVRKKMDLD 762 (819)
Q Consensus 746 ~g~~~~a-~~~~~~m~~~ 762 (819)
..++++. .+++..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6655554 7788888653
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.09 E-value=10 Score=33.49 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=7.6
Q ss_pred chhhHHHHHHHHHhc
Q 039792 495 DVFAGSALIDAYSKC 509 (819)
Q Consensus 495 ~~~~~~~li~~~~~~ 509 (819)
+...++.++..|++.
T Consensus 40 ~~~~~~~li~ly~~~ 54 (140)
T smart00299 40 NPALQTKLIELYAKY 54 (140)
T ss_pred chhHHHHHHHHHHHH
Confidence 444555555555543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.094 Score=47.00 Aligned_cols=86 Identities=10% Similarity=0.115 Sum_probs=61.5
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhH
Q 039792 264 SVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDRE 343 (819)
Q Consensus 264 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 343 (819)
.++..+.+.+........++.+.+.+...+....+.|+..|++.++.++..++++.... .....++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35566667777777888888888777677788899999999999888888888874332 444566777777777777
Q ss_pred HHHHHHHHH
Q 039792 344 AMKLFTEMT 352 (819)
Q Consensus 344 A~~~~~~m~ 352 (819)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776643
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.30 E-value=32 Score=37.73 Aligned_cols=179 Identities=13% Similarity=0.095 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHH
Q 039792 561 NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICT 637 (819)
Q Consensus 561 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 637 (819)
+..+|..-+.--...|+.+...-+++...-.- ..-...|--.+.-....|+.+-|..++.+.. .|+...-..+-.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 44567777777777777777777776654311 1122344444455555588888877776544 3333322333333
Q ss_pred HH-hCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHH---HHHHHHHhcCCccCchHHHHHHHHh---h
Q 039792 638 NA-HHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGL---DHFQSMAGFGIEPGMEHYASVVSLL---G 709 (819)
Q Consensus 638 ~~-~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~---~~~~~m~~~g~~p~~~~y~~li~~l---~ 709 (819)
+. ..|++..|..+++...++ + |+.+ .-..-+....+.|+.+.+. +++... .++..+++.+-..+ .
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~-----~~~~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSI-----YEGKENNGILEKLYVKFA 447 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHh-----cccccCcchhHHHHHHHH
Confidence 33 458999999999999874 4 7653 2333344566778888777 333332 23333333222222 2
Q ss_pred cccc----hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCC
Q 039792 710 RNVW----NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNS 747 (819)
Q Consensus 710 r~~w----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 747 (819)
|-.| +.+.|..+..++.+..|++-.-|..+.++....+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 2222 8899999999999999999999999999887776
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.28 E-value=4.5 Score=40.37 Aligned_cols=112 Identities=8% Similarity=0.049 Sum_probs=51.4
Q ss_pred CChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHhccCChHHHH
Q 039792 510 FSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAAL----ITAASNLGSLKHGQ 582 (819)
Q Consensus 510 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----l~~~~~~g~~~~a~ 582 (819)
|+..+|...++++.+ .|..+++--=.++...|+.+.-...+++.... ..||...|..+ .-++...|-+++|+
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 444444444444443 24444544445555555555555555554432 22333222211 12223445555555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 039792 583 QFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGST 623 (819)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 623 (819)
+.-++..+.+.. |.....++...+.-.|++.++.++..+-
T Consensus 196 k~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555555544422 4444444555555555555555555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.20 E-value=18 Score=34.73 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=46.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC--chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchh
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPN--YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNV 715 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~ 715 (819)
+...++.+++...+.+... ..|+ ...+..+...+...+.++++...+.......-. ....+..+...+. ..++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~ 252 (291)
T COG0457 177 LEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLL-ELGRY 252 (291)
T ss_pred HHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHH-HcCCH
Confidence 4455666666666666655 3333 345555555666666666666666666541111 1122222222222 11245
Q ss_pred hhHHHHHHHHHccCCC
Q 039792 716 ELGRYAAEMAISIDPM 731 (819)
Q Consensus 716 ~~a~~~~~~~~~~~p~ 731 (819)
+.+....++.++..|.
T Consensus 253 ~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 253 EEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 6666666666666665
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.07 E-value=7.2 Score=33.38 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=38.6
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLD 594 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 594 (819)
.-++.+...|+-+.-.++++++... -+|++.....+..+|.+.|+..++.+++..+.+.|++
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3456667777777777777776642 3667777777777788888888877777777777754
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.03 E-value=1 Score=30.45 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI 664 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (819)
.|..+...|...|++++|.++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 567777888888888888888888887 677654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=89.31 E-value=33 Score=36.81 Aligned_cols=101 Identities=13% Similarity=0.098 Sum_probs=62.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC-Cc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCC-ccCchHHHHHHHHh
Q 039792 632 NSMICTNAHHGEPMKALLLFREMIIEGLEP-NY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGI-EPGMEHYASVVSLL 708 (819)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p~~~~y~~li~~l 708 (819)
..+..+..+.|+.++|++.|++|.+.. .+ |. .....|+.++...+.+.++..++.+-.+... +.-..+|+..+- .
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL-k 340 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL-K 340 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH-H
Confidence 456677778888888888888887632 22 12 3567788888888888888888877543221 222345554331 1
Q ss_pred hcccc---------------hhhhHHHHHHHHHccCCCCch
Q 039792 709 GRNVW---------------NVELGRYAAEMAISIDPMDSG 734 (819)
Q Consensus 709 ~r~~w---------------~~~~a~~~~~~~~~~~p~~~~ 734 (819)
.|++- ....|.++.+++++.+|.-+.
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 12110 112345678888888876443
|
The molecular function of this protein is uncertain. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.06 E-value=2.3 Score=42.17 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCchhHHH
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMII-----EGLEPNYITFVG 668 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 668 (819)
..++..++..+..+|+.+.+.+.+++.. +-|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3466677888888888888888887765 44667888888888888888888888887764 466676655555
Q ss_pred HHHH
Q 039792 669 VLSA 672 (819)
Q Consensus 669 ll~a 672 (819)
+..+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=88.94 E-value=17 Score=40.00 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=18.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIK 590 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 590 (819)
+..+++...-.|+-+.+.+.+....+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 44566666677888888887776655
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.92 Score=28.40 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3577777788888888888888888877 6664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.84 E-value=5 Score=34.13 Aligned_cols=90 Identities=23% Similarity=0.230 Sum_probs=63.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchH-----HHHHHHH
Q 039792 635 ICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEH-----YASVVSL 707 (819)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~-----y~~li~~ 707 (819)
.-+.+..|+.+.|++.|.+.+. +-|. ...|+.-..++.-.|+.++|+.-+++..+ .|-+-.... -+.+..+
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3456788999999999999998 7775 57899999999999999999999999998 665422111 1233444
Q ss_pred hhcccchhhhHHHHHHHHHccCC
Q 039792 708 LGRNVWNVELGRYAAEMAISIDP 730 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p 730 (819)
.| +.+.|+.-++.+-++..
T Consensus 128 ~g----~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 128 LG----NDDAARADFEAAAQLGS 146 (175)
T ss_pred hC----chHHHHHhHHHHHHhCC
Confidence 44 44555554544444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.79 E-value=4.8 Score=40.85 Aligned_cols=132 Identities=12% Similarity=0.247 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----ChHHHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCCH
Q 039792 543 NEEAIKLYLELLLSQQRPNEFTFAALITAASN--LG----SLKHGQQFHNHLIKLGLD---FDSFITSALIDMYAKCGSL 613 (819)
Q Consensus 543 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 613 (819)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+++.|.+..+- ++-..+.+|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455677777777777776666553333222 11 234566666666664432 122222222211 12221
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHH-HHHHHHHccCC--HHHHHHHHHHH
Q 039792 614 EDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFV-GVLSACSHAGL--IEDGLDHFQSM 689 (819)
Q Consensus 614 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~-~ll~a~~~~g~--~~~a~~~~~~m 689 (819)
++- .+.+..+|+.+.+.|+..+. ..+. .++..+..... +.++.++++.+
T Consensus 156 e~l---------------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EEL---------------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HHH---------------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 111 24455666666666666643 2233 33332222211 34566667777
Q ss_pred HhcCCccCchHHHH
Q 039792 690 AGFGIEPGMEHYAS 703 (819)
Q Consensus 690 ~~~g~~p~~~~y~~ 703 (819)
.+.|+++...||..
T Consensus 209 ~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 209 KKNGVKIKYMHYPT 222 (297)
T ss_pred HHcCCccccccccH
Confidence 66777766666653
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.51 E-value=0.73 Score=28.78 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 733 SGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 733 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+..|..++.+|...|++++|.+.+++..+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35788999999999999999999998765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.87 E-value=2.3 Score=42.38 Aligned_cols=88 Identities=14% Similarity=0.150 Sum_probs=48.6
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhccc---
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNV--- 712 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~--- 712 (819)
-|.++|.+++|+..|.+.+. +.| |.+++..-..||.+...+..|..-....+... ...+.+|.|.+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHHH
Confidence 45555666666666665555 555 55666666666666655555544444333210 11223333320
Q ss_pred ---chhhhHHHHHHHHHccCCCCch
Q 039792 713 ---WNVELGRYAAEMAISIDPMDSG 734 (819)
Q Consensus 713 ---w~~~~a~~~~~~~~~~~p~~~~ 734 (819)
-+.+.|..-+|.+++++|++-.
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcccHH
Confidence 1566777788889999998544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=87.82 E-value=0.69 Score=26.99 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHH
Q 039792 734 GSYTLLSNTFACNSMWADAKQVRK 757 (819)
Q Consensus 734 ~~~~~l~~~y~~~g~~~~a~~~~~ 757 (819)
.....|+.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999999875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.78 E-value=55 Score=37.16 Aligned_cols=75 Identities=12% Similarity=0.074 Sum_probs=48.4
Q ss_pred hHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcC
Q 039792 295 SVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGS 372 (819)
Q Consensus 295 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 372 (819)
.++..+|+.+.-.|++++|-...-.|...+..-|.-.+..+...++......++ ....-+.+...|..+|..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 456667788888888999988888888888888887777777777665433322 111112234456556655544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.64 E-value=9.8 Score=41.16 Aligned_cols=103 Identities=15% Similarity=0.049 Sum_probs=65.2
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 039792 502 LIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHG 581 (819)
Q Consensus 502 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 581 (819)
-.+...++|+++.|.++.++.. +...|..|.....+.|+++-|.+.|++..+ |..|+-.+.-.|+.+.-
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 3455667888888887776665 455888888888888888888888876543 45555566667777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 039792 582 QQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFG 621 (819)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 621 (819)
.++.+.....|- +|....++...|+.++..+++.
T Consensus 393 ~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 393 SKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 777766665542 2333444445566665555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.57 E-value=4.6 Score=43.64 Aligned_cols=131 Identities=13% Similarity=0.104 Sum_probs=75.4
Q ss_pred HHHhcCCchhHHHHHH--HHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCCh
Q 039792 233 GYVKSGRSDLSLNLFN--QMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRV 310 (819)
Q Consensus 233 ~~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 310 (819)
...-+|+++++.++.+ ++.. .+ +..-...++.-+-+.|..+.|.++-. |+ ..-.+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCH
Confidence 3455677777766664 1111 11 13346667777777777777776533 22 2234566788999
Q ss_pred HHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHc
Q 039792 311 KMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKA 389 (819)
Q Consensus 311 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 389 (819)
+.|.++.++.. +...|..|-....++|+++-|.+.|.+..+ |..++--+...|+.+...++-+.....
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99998887766 445899999999999999999999888643 333444444445555544444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.42 E-value=4.6 Score=40.14 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=63.5
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHh-----cCCccCchHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAG-----FGIEPGMEHYA 702 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~y~ 702 (819)
.+++.++..+...|+++.+.+.++++.. ..| |...|..++.+|.+.|+...|+..++.+.+ .|+.|..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3567788999999999999999999998 778 678999999999999999999999998765 57888755444
Q ss_pred HHHH
Q 039792 703 SVVS 706 (819)
Q Consensus 703 ~li~ 706 (819)
....
T Consensus 232 ~y~~ 235 (280)
T COG3629 232 LYEE 235 (280)
T ss_pred HHHH
Confidence 3333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.35 E-value=22 Score=32.02 Aligned_cols=51 Identities=14% Similarity=0.018 Sum_probs=24.0
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
...++.+.++.++..+.-..+. ....-..-...+.+.|++.+|..+|+++.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3445555555555555544332 11222222333445555555555555554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=87.32 E-value=18 Score=31.09 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=74.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhcCCHH
Q 039792 538 TQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFI---TSALIDMYAKCGSLE 614 (819)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~ 614 (819)
.-.|..++..++..+.... .+..-++-+|--....-+-+. +++-+.+-|--.|... .-.++..|++.|..
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~y---vv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~- 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDY---VVETLDSIGKIFDISKCGNLKRVIECYAKRNKL- 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHH---HHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhH---HHHHHHHHhhhcCchhhcchHHHHHHHHHhcch-
Confidence 3456666777777766643 233344444433333333333 2333333332223221 12334444444332
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 039792 615 DAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGI 694 (819)
Q Consensus 615 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 694 (819)
..-.+.-+......|+-++-.+++.++.+ +-+|+.....-+.+||.+.|+..++.+++.+..+.|+
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 22344567778888998888888888875 3477888888999999999999999999999988886
Q ss_pred c
Q 039792 695 E 695 (819)
Q Consensus 695 ~ 695 (819)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.04 E-value=1.4 Score=28.11 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=14.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMI 655 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~ 655 (819)
|+.|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.99 E-value=0.93 Score=29.92 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 734 GSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 734 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5788999999999999999999998865
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.83 E-value=36 Score=38.88 Aligned_cols=92 Identities=18% Similarity=0.137 Sum_probs=48.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChH--hHHHHHHHHHhCCC------------hHHHHHHHHHHHHcC-----CCCC-
Q 039792 603 LIDMYAKCGSLEDAYETFGSTTWKDVA--CWNSMICTNAHHGE------------PMKALLLFREMIIEG-----LEPN- 662 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~------------~~~A~~~~~~m~~~g-----~~p~- 662 (819)
...-+...|++++|..+|+-....|.+ ..|.+++....... ...|..+.+.....+ +.+.
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~ 499 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKN 499 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHH
Confidence 344566788888888888877755433 34544443333222 233444444332211 2232
Q ss_pred chhHHHHHH-----HHHccCCHHHHHHHHHHHHhcCCccC
Q 039792 663 YITFVGVLS-----ACSHAGLIEDGLDHFQSMAGFGIEPG 697 (819)
Q Consensus 663 ~~t~~~ll~-----a~~~~g~~~~a~~~~~~m~~~g~~p~ 697 (819)
..|+..|+. ...+.|++++|++.++++ ++-|.
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L---~liP~ 536 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKL---DLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT---T-S-S
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC
Confidence 356666665 356789999998777665 57773
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.55 E-value=38 Score=38.76 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=38.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHh---
Q 039792 534 LLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGL-DFDSFITSALIDMYAK--- 609 (819)
Q Consensus 534 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~--- 609 (819)
...+.-.|+++.|++.+-+ ..+...+.+-+...+.-+.-..-.+... ..+..... .|....+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4455667888888887766 2334556666655555443222111111 22221111 1122456677777775
Q ss_pred cCCHHHHHHHHhcCC
Q 039792 610 CGSLEDAYETFGSTT 624 (819)
Q Consensus 610 ~g~~~~A~~~~~~~~ 624 (819)
..+..+|.+.|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 456777777776554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.48 E-value=34 Score=33.39 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=41.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 634 MICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+..-|.++|.+..|..-+++|++. -|+. ..+-.+..+|.+.|..++|...-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445688899999999999999984 4442 3466667788889988888877665554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.43 E-value=82 Score=37.76 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=33.9
Q ss_pred CChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHh
Q 039792 308 GRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSC 370 (819)
Q Consensus 308 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 370 (819)
++++.|+.-+.++. ...|+-.+..--++|.+.+|+.++ +|+...+..+..+|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~y 945 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAY 945 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHH
Confidence 56777776666655 345666666666788888888775 56666665555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.32 E-value=22 Score=32.37 Aligned_cols=136 Identities=9% Similarity=0.026 Sum_probs=76.8
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCC
Q 039792 244 LNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVK 323 (819)
Q Consensus 244 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 323 (819)
+++++.+.+.+++|+...+..+++.+.+.|.+..-. .++..++-+|.......+-.+.. ....+.++=-.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 445556667778888888888888888887754333 33444544444433333322221 222233333333322
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHc
Q 039792 324 NIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKA 389 (819)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 389 (819)
=-..+..++..+...|++-+|+++.+.... .+......++.+..+.+|...-..++....+.
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223466677788888888888888877532 22333345666666666666555565555543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.04 E-value=5.5 Score=36.73 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=52.4
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCchh------HHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhc
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEPNYIT------FVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGR 710 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r 710 (819)
-+...|++++|..-|.+.++ +-|...+ |..-..++.+.+.++.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~----------------------------- 152 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWES----------------------------- 152 (271)
T ss_pred HhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHH-----------------------------
Confidence 45567888888888888877 4554322 2222233444444444
Q ss_pred ccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 711 NVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 711 ~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+...+.+++++.|..-.+...-+-+|.+...+++|.+=++++.+
T Consensus 153 -------aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 153 -------AIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred -------HHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44445566666666666666666677777777777777776665
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.89 E-value=31 Score=32.49 Aligned_cols=170 Identities=13% Similarity=0.035 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChH-hHHHHHH--HHHhCCChHHHHHHHHHH
Q 039792 578 LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVA-CWNSMIC--TNAHHGEPMKALLLFREM 654 (819)
Q Consensus 578 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m 654 (819)
...|+.=|.+.....++ -+.++|.|.--+...|+++.|.+.|+...+-|+. -|..+=. ++--.|+++-|.+-|.+.
T Consensus 81 ~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 81 RALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHH
Confidence 33444444444443333 3567777777778888888888888877754432 1222222 233457888888766666
Q ss_pred HHcCCCCCch---hHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHH--HHhhcccchhhhHHHHHHHHHccC
Q 039792 655 IIEGLEPNYI---TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVV--SLLGRNVWNVELGRYAAEMAISID 729 (819)
Q Consensus 655 ~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li--~~l~r~~w~~~~a~~~~~~~~~~~ 729 (819)
-+ -.|+.. .|..+. ...-+..+|..-+.+-. . ..+.+-|+..+ -.+|+- .. +.+.+++.+-.
T Consensus 160 YQ--~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~-~--~~d~e~WG~~iV~~yLgki--S~---e~l~~~~~a~a 226 (297)
T COG4785 160 YQ--DDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRA-E--KSDKEQWGWNIVEFYLGKI--SE---ETLMERLKADA 226 (297)
T ss_pred Hh--cCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHH-H--hccHhhhhHHHHHHHHhhc--cH---HHHHHHHHhhc
Confidence 55 344432 222222 22234455543332211 1 12223333222 222321 11 11223333322
Q ss_pred CCC-------chhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 730 PMD-------SGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 730 p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.++ .++|.-|+.-|...|+.++|..+++....
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 222 35788899999999999999999997654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.84 E-value=1.3 Score=27.71 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 734 GSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 734 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
..|..++.+|...|++++|...+++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 5789999999999999999999998865
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.60 E-value=11 Score=33.99 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039792 632 NSMICTNAHHGEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (819)
..|.-+-.+.|++.+|.+.|+++......|
T Consensus 171 EALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 345445556666666666666665533334
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.47 E-value=1.9 Score=26.78 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
.|..+...|...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 456667777777777777777777776 5554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.99 E-value=18 Score=36.70 Aligned_cols=101 Identities=16% Similarity=0.249 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCC----hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 039792 543 NEEAIKLYLELLLSQQ---RPNEFTFAALITAASNLGS----LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLED 615 (819)
Q Consensus 543 ~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~g~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 615 (819)
..+|.++|+.|++... .++..++..++.. ...+ .+..+.+++.+.+.|+..+-... .|-..+.-++..
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ-~LS~iLaL~~~~-- 193 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQ-FLSHILALSEGD-- 193 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHH-HHHHHHHhcccc--
Confidence 4678999999998643 4667778777765 3333 35566777777777776432211 111111111100
Q ss_pred HHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 039792 616 AYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSA 672 (819)
Q Consensus 616 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 672 (819)
.... ..++.++++.+.+.|+++....|..+.-.
T Consensus 194 -----------------------~~~~-v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 194 -----------------------DQEK-VARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred -----------------------chHH-HHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 0111 45788899999999999887766655543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.67 E-value=31 Score=31.41 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=17.1
Q ss_pred HHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHH
Q 039792 384 AYSFKANIESDNFVKNSLVDMYAKCDSLTEARK 416 (819)
Q Consensus 384 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 416 (819)
.-+.+.++.++...+..+++.+.+.|+...-..
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 333445555555555555555555555444333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.58 E-value=1.3 Score=27.89 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=17.8
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 039792 586 NHLIKLGLDFDSFITSALIDMYAKCGSLEDAY 617 (819)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 617 (819)
++.++..+. +...|+.|...|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 344444443 5566666666666666666654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.74 E-value=2.1 Score=26.62 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 734 GSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 734 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4789999999999999999999998765
|
... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.60 E-value=8.1 Score=38.33 Aligned_cols=96 Identities=18% Similarity=0.247 Sum_probs=57.9
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CC--------ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 592 GLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-WK--------DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 592 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
|......+...++..-....+++++...+-+.. .| ...+|-.++ -.=+.++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 333344445555555555666666666665444 22 122332222 22356677777777777777777
Q ss_pred chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 663 YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 663 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..++..|+..+.+.|++.+|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 77777777777777777777777666654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.55 E-value=38 Score=38.22 Aligned_cols=131 Identities=17% Similarity=0.084 Sum_probs=73.7
Q ss_pred HHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCccCchHHHHH
Q 039792 631 WNSMICTNAHHG-----EPMKALLLFREMIIEGLEPNYITFVGVLSACSH-AGLIEDGLDHFQSMAGFGIEPGMEHYASV 704 (819)
Q Consensus 631 ~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~g~~p~~~~y~~l 704 (819)
..-+...|.+.. +.+.|+.++.+.-+.| .|+...+...+.-... ..+...|.++|......|..+.....+-+
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~ 369 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALC 369 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344444444432 4566777777776655 3444433333332222 24567777777777776665543332222
Q ss_pred HHHhhcc-cchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC-CCchHHHHHHHHHHhCCCc
Q 039792 705 VSLLGRN-VWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACN-SMWADAKQVRKKMDLDGLM 765 (819)
Q Consensus 705 i~~l~r~-~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~g~~ 765 (819)
-..|-. .-+.+.|...++++.+.. ++.+...++..|.-. ++++.+.-.+..+.+.|.+
T Consensus 370 -y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 370 -YELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred -HHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 222211 017778888888888877 345555555555433 8888888877777776653
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.16 E-value=1.4 Score=27.21 Aligned_cols=28 Identities=7% Similarity=0.019 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 735 SYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 735 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
++..++.+|...|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5678999999999999999999998753
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.57 E-value=21 Score=32.31 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=22.1
Q ss_pred hCCChHHHHHHHhcccCCCcccHHHHHH-----HHHcCCChhHHHHHHHHHHH
Q 039792 306 KCGRVKMARRLFDEIEVKNIISWTTLIG-----GYMQNSFDREAMKLFTEMTR 353 (819)
Q Consensus 306 ~~g~~~~A~~~~~~~~~~~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~ 353 (819)
+.++.++|..-|..+.+.+--.|-.|.. ...+.|+...|...|.+.-.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 3444455555555544444444443322 23344555555555555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.40 E-value=12 Score=36.78 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=12.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 666 FVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 666 ~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+.-|..+..+.|+.++|..+|++..+
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33344444445555555555555444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.23 E-value=19 Score=33.46 Aligned_cols=93 Identities=19% Similarity=0.181 Sum_probs=51.0
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCc----hhHH
Q 039792 530 WNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEF--TFAALITAASNLGSLKHGQQFHNHLIKL---GLDFD----SFIT 600 (819)
Q Consensus 530 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~~~ 600 (819)
+..+..-|.+.|+.++|++.|.++.+....|... .+..+|..+...+++..+.....++... |-.++ ..+|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 3445566666677777777777766654444332 3456666677777777777766655432 11111 1122
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 601 SALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
..|. +...+++.+|-+.|-...
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHccC
Confidence 2222 223567777766665544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.67 E-value=9.4 Score=27.00 Aligned_cols=51 Identities=10% Similarity=-0.032 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 039792 735 SYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAADLTYSILDNLILHIKGVGY 811 (819)
Q Consensus 735 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~~~ 811 (819)
..+.++-.+++.|+|++|.+..+.+.+ . .|...+..+-.+.+..+|.+.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~----~----------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE----I----------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH----H----------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh----h----------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 466788999999999999999998875 2 34444444445566678887774
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=81.44 E-value=29 Score=35.35 Aligned_cols=216 Identities=16% Similarity=0.088 Sum_probs=118.8
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCc---hhHHHHHHHHHHhcC
Q 039792 539 QQLENEEAIKLYLELLLS--QQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL--GLDFD---SFITSALIDMYAKCG 611 (819)
Q Consensus 539 ~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~~g 611 (819)
+..+.++|+..|.+-..+ ...-...+|..+..+.+..|.++++..+--.-++. ..+.. -..|--+...+.+--
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666554432 11122345666677777777777665533222111 11111 122333444454544
Q ss_pred CHHHHHHHHhcCC-----CC-Ch--HhHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCC--chhHHHHHHHHHccCC
Q 039792 612 SLEDAYETFGSTT-----WK-DV--ACWNSMICTNAHHGEPMKALLLFREMIIEGL---EPN--YITFVGVLSACSHAGL 678 (819)
Q Consensus 612 ~~~~A~~~~~~~~-----~~-~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~ 678 (819)
++.+++.+-+.-. .+ .. ...-+|..++.-.+.++++++.|+...+--- .|. -..+..|.+.|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 5555554443211 11 11 1223466677777889999999998875211 221 2468899999999999
Q ss_pred HHHHHHHHHHHHh----cCCccCchHHHHHH--------HHhhcccchhhhHHHHHHHHHcc--CCCCchhH----HHHH
Q 039792 679 IEDGLDHFQSMAG----FGIEPGMEHYASVV--------SLLGRNVWNVELGRYAAEMAISI--DPMDSGSY----TLLS 740 (819)
Q Consensus 679 ~~~a~~~~~~m~~----~g~~p~~~~y~~li--------~~l~r~~w~~~~a~~~~~~~~~~--~p~~~~~~----~~l~ 740 (819)
+++|.-+..+..+ +++.--...|.+|+ .+.| .+..|....+++.++ .-.|...| -.++
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G----~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLG----RLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhc----ccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 9999877776654 44433333344332 3334 344455555555443 23344444 4688
Q ss_pred HHHHhCCCchHHHHHHHH
Q 039792 741 NTFACNSMWADAKQVRKK 758 (819)
Q Consensus 741 ~~y~~~g~~~~a~~~~~~ 758 (819)
+||...|+.|.|-.-++.
T Consensus 254 DIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHhcccHhHHHHHHHH
Confidence 999999998877665543
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.98 E-value=17 Score=38.73 Aligned_cols=96 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHH
Q 039792 644 PMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAA 722 (819)
Q Consensus 644 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~ 722 (819)
..+...+|++...+ +.-|...|...+.-|-+.+.+.+...+|..|.. ++..|+.-.|++.-..=-+. |++.++.++
T Consensus 87 ~~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~--ni~saRalf 163 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL--NIESARALF 163 (568)
T ss_pred HHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc--chHHHHHHH
Q ss_pred HHHHccCCCCchhHHHHHHH
Q 039792 723 EMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 723 ~~~~~~~p~~~~~~~~l~~~ 742 (819)
-+++...|+++..|.-.-.+
T Consensus 164 lrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 164 LRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HHHhhcCCCChHHHHHHHHH
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=80.94 E-value=66 Score=32.49 Aligned_cols=100 Identities=9% Similarity=0.001 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhccCChH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CC--ChHhHHHHHH
Q 039792 563 FTFAALITAASNLGSLK---HGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-WK--DVACWNSMIC 636 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~~li~ 636 (819)
.++..++.++...+..+ +|..+++.+...... .+.++-.-++.+.+.++.+.+.+++.+|. .. ....|...+.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 34555566666555443 344444455433322 34444444555555666777777666665 11 2234444444
Q ss_pred HHH--hCCChHHHHHHHHHHHHcCCCCCc
Q 039792 637 TNA--HHGEPMKALLLFREMIIEGLEPNY 663 (819)
Q Consensus 637 ~~~--~~g~~~~A~~~~~~m~~~g~~p~~ 663 (819)
.+. .......|...++.++...+.|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 431 112344566666666655555543
|
It is also involved in sporulation []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=80.43 E-value=16 Score=33.82 Aligned_cols=16 Identities=25% Similarity=0.096 Sum_probs=10.5
Q ss_pred hCCChHHHHHHHhccc
Q 039792 306 KCGRVKMARRLFDEIE 321 (819)
Q Consensus 306 ~~g~~~~A~~~~~~~~ 321 (819)
..|++..|-+.|-+..
T Consensus 125 ~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 125 AQRDFKEAAELFLDSL 140 (177)
T ss_pred HhchHHHHHHHHHccC
Confidence 3567777777776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.1 bits (154), Expect = 2e-10
Identities = 25/210 (11%), Positives = 58/210 (27%), Gaps = 8/210 (3%)
Query: 559 RPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYE 618
P E A L+ A SL Q + L A L A+
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 619 TF-------GSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLS 671
+ +N+++ A G + + + + GL P+ +++ L
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 672 ACSHAGLIEDGLDH-FQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDP 730
++ + M+ G++ A ++S R + + ++
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 731 MDSGSYTLLSNTFACNSMWADAKQVRKKMD 760
+ + L ++ +
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.4 bits (147), Expect = 1e-09
Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 7/134 (5%)
Query: 342 REAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSL 401
+ A L ++ P + + +L +L+ + +A + +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 402 VDMYAKCDSLTEARKVFDVMADR-------NVVSYNAMIEGYSKEEKLSEALDLFHEMRV 454
D L A + V + + YNA++ G++++ E + + ++
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 455 GFVPPGLLTFVSLL 468
+ P LL++ + L
Sbjct: 194 AGLTPDLLSYAAAL 207
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 4e-07
Identities = 26/217 (11%), Positives = 73/217 (33%), Gaps = 9/217 (4%)
Query: 236 KSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQI---HAHVLRRGMGM 292
D+ Q + + + L + C + + + H ++ +
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 293 DVSVINVLMDFYSKCGRVKMARRLFDEIEVK----NIISWTTLIGGYM-QNSFDREAMKL 347
+ + N +M +++ G K + ++ +++S+ + Q+ +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 348 FTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVH-AYSFKANIESDNFVKNSLVDMYA 406
+M++ G K + +L+ L+ +V +S + L D+YA
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 407 KCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLS 443
K ++ + + + + +E S+ +S
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVS 320
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.0 bits (120), Expect = 2e-06
Identities = 30/217 (13%), Positives = 69/217 (31%), Gaps = 15/217 (6%)
Query: 336 MQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDN 395
+ ++ ++ SG + A + VH +
Sbjct: 106 LSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL 165
Query: 396 FVKNSLVDMYAKCDSLTEARKVFDVMADR----NVVSYNAMIEGYSKEEKLSEAL-DLFH 450
+ N+++ +A+ + E V ++ D +++SY A ++ ++++ + +
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE 225
Query: 451 EM-RVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKC 509
+M + G L T V L + K + + V L D Y+K
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285
Query: 510 FSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEA 546
+L + + + +QL E A
Sbjct: 286 GRVSYPKLHLPLKTLQCL---------FEKQLHMELA 313
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.7 bits (109), Expect = 3e-05
Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 8/173 (4%)
Query: 445 ALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALID 504
A L R P LL + SL+ + G + + A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 505 AYSKCFSNKDARLVFDEMNQR-------DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQ 557
A + + + + ++NA++LG+ +Q +E + + + +
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 558 QRPNEFTFAALITAASNLGSLKHG-QQFHNHLIKLGLDFDSFITSALIDMYAK 609
P+ ++AA + ++ + + GL + T+ L+ +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 7e-09
Identities = 90/624 (14%), Positives = 181/624 (29%), Gaps = 197/624 (31%)
Query: 26 LLKSVTFSPRNPSLQSFNISTKRSVLAWFLQRPLPDNFNNKRITCYKQVHAQIAISGLQC 85
L+ + R PS+ + +R L + + +N R+ Y ++ + A+ L+
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAK-YNVSRLQPYLKL--RQALLELRP 149
Query: 86 DTFLA--NMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIG 143
+ +L G+ K + + Y + M F
Sbjct: 150 AKNVLIDGVL-----------GSGK-------------TWVALD-VCLSYKVQCKMDFKI 184
Query: 144 F-LKVGNGRPDDYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNL 202
F L + N + +L + Q+ D HS IK
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQI----DPNWTSRSDHSSNIKL--------------- 225
Query: 203 YAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLL 262
+ + L+ Y L L L V +
Sbjct: 226 -----RIHSIQAELRRLLKSK---------PYENC----L-LVL-------LNVQNAKAW 259
Query: 263 SSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEV 322
++ +C +L + R V + L + + EV
Sbjct: 260 NAFNLSCKIL------------LTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 323 KNIIS-WTTLIGGYMQNSFD--REA-------MKLFTEMTRSGWKPDDFACSSVLTSCGS 372
K+++ + D RE + + E R D +
Sbjct: 304 KSLLLKYLDC------RPQDLPREVLTTNPRRLSIIAESIR------DGLAT-------- 343
Query: 373 VEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLT--EARKVFDVMADRNVVSYN 430
+ + V+ IES SL + L E RK+FD ++ V +
Sbjct: 344 ---WDNWKHVNCDKLTTIIES------SL-------NVLEPAEYRKMFDRLS---VFPPS 384
Query: 431 AMIE--------GYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQ 482
A I + + ++ H+ SL+ ES+
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKY-------------SLVEKQPK----ESTIS 427
Query: 483 IHGLIIKYGVFLDVFAG--SALIDAYS--KCFSNKDARLVFDEMNQRDIVVWNAMLLGY- 537
I + ++ V L+ +++D Y+ K F + D D ++ +G+
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP-----PYLDQYFYS--HIGHH 480
Query: 538 TQQLENEEAIKLYLELLLSQQRPNEFTF---------AALITAASNLGSLKHGQQFHNHL 588
+ +E+ E + L+ + L F F A + S L +L+ + + ++
Sbjct: 481 LKNIEHPERMTLFRMVFLD------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 589 IKLGLDFDSFITSALIDMYAKCGS 612
++ + +A++D K
Sbjct: 535 CDNDPKYERLV-NAILDFLPKIEE 557
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 6e-05
Identities = 52/396 (13%), Positives = 104/396 (26%), Gaps = 134/396 (33%)
Query: 478 ESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDA----RLVFDEMNQRDIVVWNAM 533
E+ + + +Y L VF DA+ F KD + + + I+
Sbjct: 10 ETGEHQY----QYKDILSVF-----EDAFVDNFDCKDVQDMPKSILSKEEIDHII----- 55
Query: 534 LLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGL 593
+ LLS+Q + Q+F ++++
Sbjct: 56 -----MSKDAVSGTLRLFWTLLSKQE-------------------EMVQKFVEEVLRI-- 89
Query: 594 DFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFRE 653
++ F+ S + + + Y + D + N +P L R+
Sbjct: 90 NYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---NVSRLQPYLKL---RQ 142
Query: 654 MIIEGLEPN-YITFVG---------VLSACSHAGLI------------------EDGLDH 685
++E L P + G L C + E L+
Sbjct: 143 ALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 686 FQSMAGFGIEP----GMEHYASVV---------------------SLLG-RNVWNVELGR 719
Q + + I+P +H +++ LL NV N +
Sbjct: 202 LQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-- 258
Query: 720 YAAEMAISIDPMDSGSYTLL-----SNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIE 774
+ + LL T ++ A + L +
Sbjct: 259 --------WNAFNLSCKILLTTRFKQVTDFLSA--ATTTHISLDHHSMTLTPD------- 301
Query: 775 VNNEVHAFVARDKSHHAADLTYSILDNLILHIKGVG 810
EV + + + DL +L + +
Sbjct: 302 ---EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 819 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.71 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.68 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.66 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.64 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.63 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.62 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.62 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.61 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.59 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.49 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.44 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.42 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.4 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.38 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.37 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.37 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.37 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.37 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.36 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.36 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.34 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.33 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.33 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.32 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.31 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.31 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.31 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.29 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.26 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.26 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.24 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.23 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.22 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.2 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.19 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.18 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.17 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.15 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.15 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.14 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.13 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.13 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.11 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.09 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.08 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.06 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.04 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.02 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.02 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.98 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.94 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.92 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.91 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.9 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.87 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.84 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.82 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.8 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.78 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.78 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.78 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.73 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.71 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.71 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.7 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.69 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.66 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.64 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.63 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.58 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.57 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.56 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.54 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.54 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.54 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.53 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.51 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.5 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.49 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.48 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.48 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.47 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.44 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.43 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.42 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.41 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.41 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.4 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.39 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.39 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.34 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.33 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.29 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.26 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.25 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.24 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.23 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.22 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.21 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.2 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.19 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.19 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.18 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.18 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.17 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.16 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.16 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.14 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.14 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.14 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.13 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.13 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.09 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.09 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.06 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.04 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.04 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.03 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.02 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.01 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.0 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.99 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.97 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.96 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.96 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.94 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.92 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.91 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.9 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.89 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.88 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.88 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.87 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.86 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.85 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.85 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.83 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.8 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.8 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.8 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.76 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.75 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.75 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.74 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.71 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.69 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.65 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.63 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.61 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.6 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.59 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.58 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.55 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.49 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.47 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.47 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.41 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.4 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.4 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.38 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.38 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.36 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.32 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.29 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.28 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.27 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.13 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.12 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.12 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.06 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.02 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.01 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.01 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.96 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.94 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.89 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.81 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.76 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.71 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.69 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.67 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.64 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.23 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.19 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.09 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.84 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.74 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.64 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.37 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.35 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.15 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.0 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.82 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.9 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.49 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.16 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 92.62 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.07 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.65 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.21 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.04 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.71 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 90.69 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.84 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 89.1 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 88.77 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.88 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.72 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 85.66 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.35 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 82.33 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 81.56 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.32 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-40 Score=375.85 Aligned_cols=497 Identities=10% Similarity=-0.035 Sum_probs=327.0
Q ss_pred HHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHH
Q 039792 203 YAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIH 282 (819)
Q Consensus 203 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 282 (819)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 56678888899999999989999999999999999999999999999985 5678899999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCC-------------------CcccHHHHHHHHHcCCChhH
Q 039792 283 AHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVK-------------------NIISWTTLIGGYMQNSFDRE 343 (819)
Q Consensus 283 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 343 (819)
+.+... ++++.+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987543 678899999999999999999999999965433 36789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcch-HHHHHHHhcCCcchhhH--HHH-HHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHH
Q 039792 344 AMKLFTEMTRSGWKPDDFA-CSSVLTSCGSVEALEQG--RQV-HAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFD 419 (819)
Q Consensus 344 A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (819)
|+++|++|.+. .|+..+ +..+...+...+..+.. ..+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 99999999884 465443 44444433333322221 111 4445555555566778888999999999999999999
Q ss_pred hcCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchh
Q 039792 420 VMAD--RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVF 497 (819)
Q Consensus 420 ~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 497 (819)
++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+.. ..+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9987 788999999999999999999999999998654 2355556666666666666666666666665433 22444
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASN 574 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 574 (819)
+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------------------- 434 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA-------------------- 434 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------
Confidence 555555555555555555555554432 233344444444544555555554444444
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHH
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLF 651 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 651 (819)
+.++. +..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++..|.+.|++++|+++|
T Consensus 435 ---------------~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 498 (597)
T 2xpi_A 435 ---------------RLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHF 498 (597)
T ss_dssp ---------------HTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------HhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 33321 44445555555555555555555555443 234555555555555556666666666
Q ss_pred HHHHHc----CCCCC--chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHH
Q 039792 652 REMIIE----GLEPN--YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMA 725 (819)
Q Consensus 652 ~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~ 725 (819)
+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ ..+...|..+...|.+.+ +.+.|...++++
T Consensus 499 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 576 (597)
T 2xpi_A 499 QNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK-IPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 665553 44555 3456666666666666666666666665522 123445555555555443 556666666777
Q ss_pred HccCCCCchhHHHHHHHHHh
Q 039792 726 ISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 726 ~~~~p~~~~~~~~l~~~y~~ 745 (819)
++++|+++..|..|+++|..
T Consensus 577 l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 577 LAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTC-
T ss_pred HhcCCCChHHHHHHHHHHhc
Confidence 77788888888888877743
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=368.31 Aligned_cols=495 Identities=11% Similarity=-0.042 Sum_probs=347.4
Q ss_pred HHHcCCChhhHHHHHhccCCCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCch
Q 039792 96 NYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGN 175 (819)
Q Consensus 96 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 175 (819)
.+.+.|.+..++..|+.++.+++..|+.++.+|.+.|++++|+.+|++|+ +..|+..++..+..+|...|++++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~--- 135 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVL---DITGNPNDAFWLAQVYCCTGDYAR--- 135 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHTTCHHH---
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHH---hhCCCchHHHHHHHHHHHcCcHHH---
Confidence 35677888888999999988899999999999999999999999999984 345788888999999999998764
Q ss_pred hHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCC-------------------CeeeHHHHHHHHHh
Q 039792 176 VGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVK-------------------TAVSWTTIITGYVK 236 (819)
Q Consensus 176 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~ 236 (819)
+..++..+. ..++++.+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+
T Consensus 136 -A~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 136 -AKCLLTKED--LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp -HHHHHHHTC--GGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHh--ccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 344443322 23688899999999999999999999999965433 37899999999999
Q ss_pred cCCchhHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCChhh--HHHH-HHHHHHhCCCCchhHHHHHHHHhHhCCChHH
Q 039792 237 SGRSDLSLNLFNQMRETDVVHD-KYLLSSVLSACSMLQFVGG--GKQI-HAHVLRRGMGMDVSVINVLMDFYSKCGRVKM 312 (819)
Q Consensus 237 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 312 (819)
.|++++|+++|++|.+.+ |+ ...+..+...+...+..+. +..+ +..+...+..+...+++.++..|.+.|++++
T Consensus 213 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 999999999999998754 43 3344444444433322221 1111 4444555555566778888999999999999
Q ss_pred HHHHHhcccC--CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcC
Q 039792 313 ARRLFDEIEV--KNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKAN 390 (819)
Q Consensus 313 A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 390 (819)
|.++|+++.. ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+..
T Consensus 291 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 9999999986 788999999999999999999999999998754 2367778888888888888888888888887543
Q ss_pred CCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 039792 391 IESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSL 467 (819)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 467 (819)
+.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+.
T Consensus 370 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------- 438 (597)
T 2xpi_A 370 -PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ---------- 438 (597)
T ss_dssp -TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT----------
T ss_pred -cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------
Confidence 34566777777777777777777777776642 3456777777777777777777777777654321
Q ss_pred HHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHH
Q 039792 468 LGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAI 547 (819)
Q Consensus 468 l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 547 (819)
.+..+|+.++.+|.+.|++++|.
T Consensus 439 ---------------------------------------------------------~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 439 ---------------------------------------------------------GTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp ---------------------------------------------------------TCSHHHHHHHHHHHHHTCHHHHH
T ss_pred ---------------------------------------------------------cchHHHHHHHHHHHHcCCHHHHH
Confidence 12334444455555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCCCc--hhHHHHHHHHHHhcCCHHHHHHHHh
Q 039792 548 KLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL----GLDFD--SFITSALIDMYAKCGSLEDAYETFG 621 (819)
Q Consensus 548 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~ 621 (819)
++|+++.+.. +.+..+|..+...+.+.|++++|.++++.+.+. +..|+ ..++..++.+|.+.|++++|.+.|+
T Consensus 462 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5555555432 234556666666666666666666666666554 55565 5677777777777777777777777
Q ss_pred cCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHH
Q 039792 622 STT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSAC 673 (819)
Q Consensus 622 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 673 (819)
++. +.+..+|..+..+|...|++++|.+.|+++.+ +.|+. ..+..+..+|
T Consensus 541 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 655 34677888888888888888888888888888 67865 4555555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=256.57 Aligned_cols=182 Identities=11% Similarity=0.104 Sum_probs=170.5
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCchhH
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGS---------LKHGQQFHNHLIKLGLDFDSFI 599 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~~ 599 (819)
.++.+|++|++.|+.++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4677888899999999999999999999999999999999999987664 6789999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC----CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT----WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH 675 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 675 (819)
|++||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999887 789999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhc
Q 039792 676 AGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGR 710 (819)
Q Consensus 676 ~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r 710 (819)
.|++++|.++|++|.+.|..|+..||+.+++.+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-27 Score=254.44 Aligned_cols=210 Identities=10% Similarity=0.063 Sum_probs=160.8
Q ss_pred HHHHHHHHHhCCCCCCh-hHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcC
Q 039792 445 ALDLFHEMRVGFVPPGL-LTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMN 523 (819)
Q Consensus 445 A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 523 (819)
+..+.+++.+.+..+.. ..++.+|.+|++.|++++|.++++.|.+.|+.||..+||+||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 33444444444444332 234555566666666666666666666666666666666666666555443221
Q ss_pred CCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 039792 524 QRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSAL 603 (819)
Q Consensus 524 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 603 (819)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+|++|
T Consensus 81 --------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 81 --------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp --------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred --------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 123456889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCC----CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHcc
Q 039792 604 IDMYAKCGSLEDAYETFGSTT----WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHA 676 (819)
Q Consensus 604 i~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 676 (819)
|.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|+.|+..||+.++..|...
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999887 7899999999999999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-22 Score=218.54 Aligned_cols=371 Identities=13% Similarity=0.096 Sum_probs=244.0
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCcch-HHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCC
Q 039792 332 IGGYMQNSFDREAMKLFTEMTRSGWKPDDFA-CSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDS 410 (819)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 410 (819)
...+.+.|++++|++.++.+.+. .|+... +..+...+...|+++.|...+....+.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 44566777788888777777653 454333 2233333445555555555555554432 2234444555555555555
Q ss_pred HHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHH
Q 039792 411 LTEARKVFDVMAD--R-NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLI 487 (819)
Q Consensus 411 ~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 487 (819)
+++|...|+++.. | +..+|..+...+.+.|++++|++.|+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------------------------- 127 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA----------------------------------- 127 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------------------
Confidence 5555555544432 2 2223444444455555555555444444
Q ss_pred HHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 039792 488 IKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFT 564 (819)
Q Consensus 488 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 564 (819)
.+.... +...+..+...+...|++++|.+.|+++.+ | +..+|+.+...|...|++++|+..|+++.+.. +.+...
T Consensus 128 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 128 LQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp HHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 433221 333445566666667777777777766643 2 34567777777888888888888888877642 334566
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhC
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHH 641 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 641 (819)
+..+...+...|++++|...+....+..+. +..++..+...|.+.|++++|.+.|+++. +.+..+|..+...|.+.
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 777777888888888888888888777654 56777788888888888888888887765 33566788888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchhhhHH
Q 039792 642 GEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVELGR 719 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~~a~ 719 (819)
|++++|++.|+++.+ ..|+ ..++..+...+...|++++|.+.++++.+. .|+ ...+..+...+.+.+ +.+.|.
T Consensus 285 g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g-~~~~A~ 359 (388)
T 1w3b_A 285 GSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQG-KLQEAL 359 (388)
T ss_dssp SCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTT-CCHHHH
T ss_pred CCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcC-CHHHHH
Confidence 888888888888887 4554 467888888888888888888888888762 233 456666777666554 778888
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHHhCCC
Q 039792 720 YAAEMAISIDPMDSGSYTLLSNTFACNSM 748 (819)
Q Consensus 720 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 748 (819)
..++++++++|+++.+|..++.+|...|+
T Consensus 360 ~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 360 MHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 88888888888888888888888877664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-22 Score=217.01 Aligned_cols=349 Identities=11% Similarity=0.028 Sum_probs=274.8
Q ss_pred hhcCCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHH
Q 039792 405 YAKCDSLTEARKVFDVMAD--R-NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSK 481 (819)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 481 (819)
+.+.|++++|...+..+.+ | +...+..+...+.+.|++++|...++...+. .+.+..++..+..++...|++++|.
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHH
Confidence 3444555555555554432 2 2234444445555555566665555555432 2334455555555666666666666
Q ss_pred HHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC--CC-eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039792 482 QIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--RD-IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQ 558 (819)
Q Consensus 482 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 558 (819)
..++.+.+.... +...+..+...|.+.|++++|.+.|+++.+ |+ ...+..+...+...|++++|.+.|+++....
T Consensus 88 ~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 88 EHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 666665554322 455678899999999999999999998864 43 4567778888999999999999999998752
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHH
Q 039792 559 RPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMI 635 (819)
Q Consensus 559 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 635 (819)
+-+..++..+...+...|+++.|...++.+.+.++. +...+..+...+...|++++|...|++.. +.+..+|..+.
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence 345788999999999999999999999999998765 67889999999999999999999998765 44678999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccch
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWN 714 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~ 714 (819)
..|...|++++|++.|+++.+ +.|+. .++..+..++.+.|++++|.+.|+++.+.. .++...+..+...+.+.+ +
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g-~ 320 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG-N 320 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT-C
T ss_pred HHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC-C
Confidence 999999999999999999998 67864 679999999999999999999999999832 345667888888887655 8
Q ss_pred hhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 715 VELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 715 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.+.|...+++++++.|+++..+..++.+|...|++++|.+.++++.+
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999875
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-21 Score=217.27 Aligned_cols=248 Identities=11% Similarity=-0.006 Sum_probs=210.1
Q ss_pred cCChHHHHHHHHhcCC----------------C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039792 509 CFSNKDARLVFDEMNQ----------------R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA 571 (819)
Q Consensus 509 ~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 571 (819)
.|++++|...|+++.+ | +...|..+...+...|++++|...|+++.... |+..++..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 7788888888776543 1 24567778888999999999999999998764 447788888999
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHH
Q 039792 572 ASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKAL 648 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 648 (819)
+...|+++.|...++.+.+..+. +...+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|+
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999887654 67788999999999999999999998765 456788999999999999999999
Q ss_pred HHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccC----chHHHHHHHHhhc---ccchhhhHH
Q 039792 649 LLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPG----MEHYASVVSLLGR---NVWNVELGR 719 (819)
Q Consensus 649 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~----~~~y~~li~~l~r---~~w~~~~a~ 719 (819)
..++++.+ ..|+ ..++..+...+...|++++|...++++.+ ..-.|+ ...+..+...+.+ .+ +.+.|.
T Consensus 359 ~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~ 435 (514)
T 2gw1_A 359 TLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE-NFIEAT 435 (514)
T ss_dssp HHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT-HHHHHH
T ss_pred HHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC-CHHHHH
Confidence 99999998 5665 46788899999999999999999999987 333333 3367777777766 43 889999
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 720 YAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 720 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 436 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 436 NLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=202.88 Aligned_cols=434 Identities=9% Similarity=-0.013 Sum_probs=223.9
Q ss_pred eHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 039792 226 SWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYS 305 (819)
Q Consensus 226 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 305 (819)
.|......+.+.|++++|+..|+++.+.. |+...+..+..++...|+++.|...++.+++.. +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45556667777777888887777777654 566667777777777777777777777666654 224455555666666
Q ss_pred hCCChHHHHHHHhcccCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHH
Q 039792 306 KCGRVKMARRLFDEIEVK---NIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQV 382 (819)
Q Consensus 306 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 382 (819)
+.|++++|...|+++... +......++..+........+.+.+..+...+..|+...+..-...
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------- 151 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER------------- 151 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH-------------
Confidence 666666666666554321 2222333333333222222222223222222222222211111000
Q ss_pred HHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCC-CcchHHHHHHHHHh---cCChhHHHHHHHHHHh----
Q 039792 383 HAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADR-NVVSYNAMIEGYSK---EEKLSEALDLFHEMRV---- 454 (819)
Q Consensus 383 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~---- 454 (819)
.......|+.......+..+...... ..+..+ +...+......+.. .|++++|+..|+++.+
T Consensus 152 ---~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 152 ---KDKQENLPSVTSMASFFGIFKPELTF-------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCC-------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ---HhhccCCchhHHHHHHHhhcCHHHHH-------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence 00011112222111111111111110 001111 12333334444443 7888888888888766
Q ss_pred -CCCCCC--------hhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC-
Q 039792 455 -GFVPPG--------LLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ- 524 (819)
Q Consensus 455 -~g~~p~--------~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 524 (819)
....|+ ..++..+...+...|+++.|...+..+.+.... ...+..+...|...|++++|...|+.+.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 322222 234445555566666666666666666665444 55566666666666666666666665543
Q ss_pred --CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 039792 525 --RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSA 602 (819)
Q Consensus 525 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 602 (819)
.+...|..+...|...|++++|+..|++..... +.+..++..+...+...|+++.|...++.+.+..+. +...+..
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 377 (514)
T 2gw1_A 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNF 377 (514)
T ss_dssp CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHH
Confidence 234455666666666666666666666666542 223455556666666666666666666666655433 4455566
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCC------hHhHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCc-hhHHHH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT---WKD------VACWNSMICTNAH---HGEPMKALLLFREMIIEGLEPNY-ITFVGV 669 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~---~~~------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 669 (819)
+...|.+.|++++|.+.|+++. +.+ ...|..+...|.. .|++++|++.|+++.+ ..|+. .++..+
T Consensus 378 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l 455 (514)
T 2gw1_A 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 6666666666666666665543 111 2256666666666 6666666666666665 34433 345555
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 039792 670 LSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 670 l~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..++...|++++|...|++..+
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 5666666666666666665554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-20 Score=200.76 Aligned_cols=307 Identities=12% Similarity=-0.017 Sum_probs=220.6
Q ss_pred ChhHHhHHhhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 039792 394 DNFVKNSLVDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGL 470 (819)
Q Consensus 394 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 470 (819)
+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|...|++++|+..|+++.+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------- 89 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------
Confidence 344555555666666666666666665432 23445555666666666666666666665443
Q ss_pred hhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCe------eehhhh-----------
Q 039792 471 SSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDI------VVWNAM----------- 533 (819)
Q Consensus 471 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l----------- 533 (819)
+.. +...+..+...|.+.|++++|...|+++.+.++ ..|..+
T Consensus 90 --------------------~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 148 (450)
T 2y4t_A 90 --------------------KMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148 (450)
T ss_dssp --------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 211 334455555555666666666666655543211 333333
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 039792 534 -LLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGS 612 (819)
Q Consensus 534 -i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 612 (819)
...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|..+++.+.+..+. +..++..+..+|.+.|+
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 344788899999999999988752 456778888889999999999999999998887544 67888999999999999
Q ss_pred HHHHHHHHhcCC---CCChHhHHHH------------HHHHHhCCChHHHHHHHHHHHHcCCCCCc-----hhHHHHHHH
Q 039792 613 LEDAYETFGSTT---WKDVACWNSM------------ICTNAHHGEPMKALLLFREMIIEGLEPNY-----ITFVGVLSA 672 (819)
Q Consensus 613 ~~~A~~~~~~~~---~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a 672 (819)
+++|.+.|+++. +.+...|..+ ...|...|++++|+..|+++.+ +.|+. ..+..+..+
T Consensus 227 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHH
Confidence 999999998876 3344555555 7889999999999999999998 66763 367888889
Q ss_pred HHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHH
Q 039792 673 CSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 742 (819)
+.+.|++++|...++++.+.. ..+...|..+..++...+ +.+.|...++++++++|+++..+..++.+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEE-MYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 999999999999999988732 124566777777766544 88999999999999999999999999933
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.1e-20 Score=205.32 Aligned_cols=247 Identities=11% Similarity=0.040 Sum_probs=204.8
Q ss_pred CChHHHHHHHHhcCCCCe----------eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 039792 510 FSNKDARLVFDEMNQRDI----------VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLK 579 (819)
Q Consensus 510 g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 579 (819)
|++++|..+|+++.+.++ .+|..+...+...|++++|...|++.... .|+..++..+...+...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHH
Confidence 467888888888765322 24566667788999999999999999885 566888889999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 580 HGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 580 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
.|...++.+.+..+. +..++..+...|...|++++|.+.|++.. +.+...|..+...|...|++++|++.|+++.+
T Consensus 294 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999988765 78889999999999999999999999876 45678999999999999999999999999998
Q ss_pred cCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCc----hHHHHHHHHhhcc----------cchhhhHHH
Q 039792 657 EGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGM----EHYASVVSLLGRN----------VWNVELGRY 720 (819)
Q Consensus 657 ~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~----~~y~~li~~l~r~----------~w~~~~a~~ 720 (819)
..|+. ..+..+...+...|++++|.+.|+++.+ ..-.+.. ..+......+.+. + +.+.|..
T Consensus 373 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~A~~ 449 (537)
T 3fp2_A 373 --KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE-KFNAAIK 449 (537)
T ss_dssp --HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH-HHHHHHH
T ss_pred --hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh-HHHHHHH
Confidence 56764 5888999999999999999999999987 3222221 1122222333221 2 7899999
Q ss_pred HHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 721 AAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 721 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 450 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-18 Score=192.30 Aligned_cols=425 Identities=11% Similarity=0.043 Sum_probs=240.1
Q ss_pred eeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 039792 225 VSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFY 304 (819)
Q Consensus 225 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 304 (819)
..|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++.+++.. +.+...+..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 345566677777778888888877776643 2355667777777777777777777777777765 23566777788888
Q ss_pred HhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHC------CCCCCcchHHHHHHHhcCCcchhh
Q 039792 305 SKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRS------GWKPDDFACSSVLTSCGSVEALEQ 378 (819)
Q Consensus 305 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~ 378 (819)
.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++... ...|+...+...+. ..+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----IFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH----TSCHHH
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH----hcChHH
Confidence 88888888888886443 22222333344555556667788888877543 12222222222211 111111
Q ss_pred HHHHHHHHHHcCCCCChh---HHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039792 379 GRQVHAYSFKANIESDNF---VKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVG 455 (819)
Q Consensus 379 a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 455 (819)
+...+. .....+.. ....+...+...+. ......|++++|+.+|+++.+.
T Consensus 179 ~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~-----------------------~~~~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 179 EVSSVN----TSSNYDTAYALLSDALQRLYSATDE-----------------------GYLVANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp HHHTSC----CCCSSCSSHHHHHHHHHHHHTCSHH-----------------------HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHh----hccccccHHHHHHHHHHHHHHhhhh-----------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 111100 00011111 22222222222210 0000012344444444444332
Q ss_pred CCCCCh--------hHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---
Q 039792 456 FVPPGL--------LTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--- 524 (819)
Q Consensus 456 g~~p~~--------~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 524 (819)
.|+. .++..+-..+...|+++.|...+..+.+.... ...+..+...|...|++++|...|+++.+
T Consensus 232 --~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 307 (537)
T 3fp2_A 232 --NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307 (537)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT
T ss_pred --CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Confidence 1111 12222333334444444444444444443322 34444455555555555555555554432
Q ss_pred CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 039792 525 RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALI 604 (819)
Q Consensus 525 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 604 (819)
.+..+|..+...|...|++++|...|++..... +.+...+..+...+...|++++|..+++.+.+..+. +...+..+.
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 385 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFA 385 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 234456666667777777777777777776542 224456667777777777777777777777776543 566777777
Q ss_pred HHHHhcCCHHHHHHHHhcCCC---------CChHhHHHHHHHHHhC----------CChHHHHHHHHHHHHcCCCCCc-h
Q 039792 605 DMYAKCGSLEDAYETFGSTTW---------KDVACWNSMICTNAHH----------GEPMKALLLFREMIIEGLEPNY-I 664 (819)
Q Consensus 605 ~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~-~ 664 (819)
..|.+.|++++|.+.|+++.. .....+..+...|... |++++|+..|++..+ ..|+. .
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~ 463 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE--LDPRSEQ 463 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH--hCCCCHH
Confidence 888888888888887776541 1122344455666666 888889998888887 56654 5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 665 TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 665 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
++..+..++...|++++|.+.|++..+
T Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 464 AKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 778888888889999999998888887
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.5e-19 Score=192.52 Aligned_cols=296 Identities=14% Similarity=0.102 Sum_probs=247.9
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHH
Q 039792 425 NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALID 504 (819)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 504 (819)
+...|..+...+.+.|++++|+.+|+++.+. .| .+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p----------------------------------~~~~~~~~l~~ 68 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DP----------------------------------DNYIAYYRRAT 68 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC----------------------------------ccHHHHHHHHH
Confidence 3456777777788888888888888777542 11 24566777888
Q ss_pred HHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHH---------
Q 039792 505 AYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE----FTFAAL--------- 568 (819)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l--------- 568 (819)
.|.+.|++++|...|+++.+ .+...|..+...|.+.|++++|.+.|+++... .|+. ..+..+
T Consensus 69 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ 146 (450)
T 2y4t_A 69 VFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRL 146 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHH
Confidence 89999999999999998764 35678899999999999999999999999874 4554 444444
Q ss_pred ---HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCC
Q 039792 569 ---ITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHG 642 (819)
Q Consensus 569 ---l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 642 (819)
...+...|+++.|...++.+.+..+. +..++..++.+|.+.|++++|.+.|+++. +.+..+|..+...|...|
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34488899999999999999988654 78899999999999999999999999876 567889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCchh-HHHH------------HHHHHccCCHHHHHHHHHHHHh-cCCccC--chHHHHHHH
Q 039792 643 EPMKALLLFREMIIEGLEPNYIT-FVGV------------LSACSHAGLIEDGLDHFQSMAG-FGIEPG--MEHYASVVS 706 (819)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~m~~-~g~~p~--~~~y~~li~ 706 (819)
++++|++.|+++.+ +.|+... +..+ ..+|.+.|++++|..+|+++.+ .+-.|. ..+|.++..
T Consensus 226 ~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 99999999999998 6787654 4444 7889999999999999999998 332222 457888888
Q ss_pred HhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 707 LLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 707 ~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
++.+.+ +.+.|...++++++++|+++..|..++.+|...|++++|.+.++++.+.
T Consensus 304 ~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 304 CFSKDE-KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 888765 8999999999999999999999999999999999999999999999864
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-15 Score=169.50 Aligned_cols=629 Identities=11% Similarity=0.066 Sum_probs=348.5
Q ss_pred HHHHHHHHHhCCCCChhhhhHHHHHHHcCCChhhHHHHHhccCC-------CCcchHHHHHHHHHcCCChhhHHHHHHHH
Q 039792 72 KQVHAQIAISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSE-------RNLVSWSSLVSMYTKKGYGEEALMVFIGF 144 (819)
Q Consensus 72 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m 144 (819)
-++-..+...++. +.+-+..+.+.|-+.|-+..|.+.+..+.. .....=..++.-+.+ =..+.+++.+++|
T Consensus 593 pqvadail~~~~f-thyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~-l~~~~s~~~l~~~ 670 (1630)
T 1xi4_A 593 PQVADAILGNQMF-THYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGS-LSVEDSLECLRAM 670 (1630)
T ss_pred hhHHHHHHhcCcc-ccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 3444555556655 667788889999999999999999987643 112222334444444 5678999999999
Q ss_pred HHcCCCCCC-------------cccHHHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhH
Q 039792 145 LKVGNGRPD-------------DYILSSVICACTQLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDD 211 (819)
Q Consensus 145 ~~~~~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 211 (819)
+. .+++-| ...-..+|..+-+.+..+. .--..+.+ -.+..|+.+....|.+.++.|++.+
T Consensus 671 l~-~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~eg----l~y~l~si--v~~s~d~~vhfkyi~aa~~~~q~~e 743 (1630)
T 1xi4_A 671 LS-ANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEG----LFYFLGSI--VNFSQDPDVHFKYIQAACKTGQIKE 743 (1630)
T ss_pred HH-HhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhh----HHHHHHhh--ccccCChHHHHHHHHHHHHhCCchh
Confidence 53 222222 1222333333333332220 00011111 1245688899999999999999999
Q ss_pred HHHHHhcC---------------CCCCe---------e-------------eHHHHHHHHHhcCCchhHHHHHHHHHHCC
Q 039792 212 AKFVFDGL---------------MVKTA---------V-------------SWTTIITGYVKSGRSDLSLNLFNQMRETD 254 (819)
Q Consensus 212 A~~~f~~~---------------~~~~~---------~-------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g 254 (819)
.+++..+- .-+|. . .....|..|++.-++..+-.+...+...+
T Consensus 744 veri~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d 823 (1630)
T 1xi4_A 744 VERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVD 823 (1630)
T ss_pred hhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCC
Confidence 98887643 11111 0 11233455555444444444444433322
Q ss_pred CCCChhhHHHHHHH-------------hhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHH--------
Q 039792 255 VVHDKYLLSSVLSA-------------CSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMA-------- 313 (819)
Q Consensus 255 ~~p~~~t~~~ll~~-------------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-------- 313 (819)
-+......+|.. +-+.+++..-...++.-+..| ..++.++|+|...|...++-.+.
T Consensus 824 --~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~y 900 (1630)
T 1xi4_A 824 --CSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYY 900 (1630)
T ss_pred --CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcc
Confidence 223333333333 223333333344455555555 34788999999888865432221
Q ss_pred -----HHHHhcccCCCc---------------------ccHHHHHHHHHcCCChhHHH-----------HHHHHHHH---
Q 039792 314 -----RRLFDEIEVKNI---------------------ISWTTLIGGYMQNSFDREAM-----------KLFTEMTR--- 353 (819)
Q Consensus 314 -----~~~~~~~~~~~~---------------------~~~~~li~~~~~~g~~~~A~-----------~~~~~m~~--- 353 (819)
-+..++. .|.. ..|-...+.+++..+.+-=- ++.+.-..
T Consensus 901 d~~~vgkyce~r-Dp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL 979 (1630)
T 1xi4_A 901 DSRVVGKYCEKR-DPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTAL 979 (1630)
T ss_pred cHHHHHHHHHhc-CcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhc
Confidence 1111110 0000 00111111111111111000 01111000
Q ss_pred -CCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCC--CCChhHHhHH---------------------------hh
Q 039792 354 -SGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANI--ESDNFVKNSL---------------------------VD 403 (819)
Q Consensus 354 -~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l---------------------------i~ 403 (819)
+...|+. .....+++...|...++.++++.++-.+- ..+....+.| ..
T Consensus 980 ~e~~~Pee--Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~ 1057 (1630)
T 1xi4_A 980 SETQDPEE--VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAN 1057 (1630)
T ss_pred ccccCHHH--hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHH
Confidence 0112222 22334444455555555555554442211 0112223333 34
Q ss_pred hhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHH
Q 039792 404 MYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQI 483 (819)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 483 (819)
.+...|.+++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+-.++...|++++|...
T Consensus 1058 Iai~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4455566666666666653 11111222222 455666666666643 2345666666777777777777666
Q ss_pred HHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC--CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 039792 484 HGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ--RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN 561 (819)
Q Consensus 484 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 561 (819)
+... -|...|..++..+.+.|++++|.+.|....+ +++...+.++.+|++.+++++. +-| .. .|+
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleel-e~f---I~---~~n 1194 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAEL-EEF---IN---GPN 1194 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHH-HHH---Hh---CCC
Confidence 6442 3555666677777777777777777765443 3333344566777777666642 222 11 345
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhC
Q 039792 562 EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHH 641 (819)
Q Consensus 562 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 641 (819)
...|..+...|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhh
Confidence 556666777777777777777777763 36777777788888888888777766 4557777777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcc-cchhhhHHH
Q 039792 642 GEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN-VWNVELGRY 720 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~-~w~~~~a~~ 720 (819)
|++..|...... +..+...+..++..|.+.|.+++|+.+++...... +-....|.-+..+|.+. .-++....+
T Consensus 1264 ~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1264 KEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 777777765543 22344556688889999999999999997776422 22334455555566543 015555566
Q ss_pred HHHHHHccCC-----CCchhHHHHHHHHHhCCCchHHHHH
Q 039792 721 AAEMAISIDP-----MDSGSYTLLSNTFACNSMWADAKQV 755 (819)
Q Consensus 721 ~~~~~~~~~p-----~~~~~~~~l~~~y~~~g~~~~a~~~ 755 (819)
.+..-+.+.| +++..|..+.-+|.+.|+|++|...
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 6666677666 6788899999999999999999853
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-16 Score=166.52 Aligned_cols=296 Identities=11% Similarity=0.081 Sum_probs=198.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHH
Q 039792 427 VSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAY 506 (819)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 506 (819)
..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|+++.|...+..+.+...
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------------- 68 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-------------- 68 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------------
Confidence 345556666667777777777777665431 12233333333333344444444444443333321
Q ss_pred HhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHH------------HH
Q 039792 507 SKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRP----NEFTFAAL------------IT 570 (819)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~l------------l~ 570 (819)
.+...|..+...|...|++++|...|++..+. .| +...+..+ ..
T Consensus 69 ------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 69 ------------------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp ------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 12234444555555556666666666555543 23 22222222 46
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 647 (819)
.+...|+++.|..+++.+.+..+. +...+..+...|.+.|++++|.+.++++. +.+...|..+...|...|++++|
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 677888889999888888887654 67788888889999999999999888765 45677888889999999999999
Q ss_pred HHHHHHHHHcCCCCCch-hHH------------HHHHHHHccCCHHHHHHHHHHHHh-cCCccCc--hHHHHHHHHhhcc
Q 039792 648 LLLFREMIIEGLEPNYI-TFV------------GVLSACSHAGLIEDGLDHFQSMAG-FGIEPGM--EHYASVVSLLGRN 711 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~--~~y~~li~~l~r~ 711 (819)
.+.|++..+ ..|+.. .+. .+...+.+.|++++|...++++.+ ..-.|.. ..+..+...+...
T Consensus 208 ~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 208 LSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 999999987 567653 232 225568889999999999999887 3222211 1122333444333
Q ss_pred cchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 712 VWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 712 ~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+ +.+.|...++++++.+|+++..|..++.+|...|++++|.+.+++..+
T Consensus 286 ~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 286 E-KPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp T-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred c-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 889999999999999999999999999999999999999999998875
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-13 Score=157.43 Aligned_cols=203 Identities=12% Similarity=0.049 Sum_probs=90.0
Q ss_pred hhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 039792 395 NFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSV 474 (819)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 474 (819)
+.+|..+..++.+.|++++|...|.+. .|...|.-++..+.+.|++++|++.|..-++.. ++....+.+..+|++.
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh
Confidence 344445555555555555555555332 334444445555555555555555554433322 1111122244444444
Q ss_pred CchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHH
Q 039792 475 FSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELL 554 (819)
Q Consensus 475 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 554 (819)
++++....+. + .++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.
T Consensus 1181 ~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1181 NRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred cCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 4444322221 1 112233334444555555555555555543 24445555555555555555554433
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 555 LSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 555 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
-+..+|..+-.+|...|++..|....-. +..++..+..++..|.+.|.+++|..+++...
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2334444444455554444444443321 11233344445555555555555555554443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-15 Score=161.26 Aligned_cols=324 Identities=12% Similarity=-0.003 Sum_probs=219.3
Q ss_pred hHHhHHhhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 039792 396 FVKNSLVDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSS 472 (819)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 472 (819)
..+..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 3455566667777777777777776643 345567777777778888888888888776542 224456666666666
Q ss_pred ccCchHhHHHHHHHHHHhCCc--cchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHH
Q 039792 473 SVFSLESSKQIHGLIIKYGVF--LDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLY 550 (819)
Q Consensus 473 ~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 550 (819)
..|+++.|...+..+.+.... .+...+..+...+. +. .+..+...+...|++++|++.|
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~------------~~~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------MQ------------RLRSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------HH------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------HH------------HHHHHHHHHHHccCHHHHHHHH
Confidence 777777777777766654331 12233332321111 00 1223455677777788888887
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCC
Q 039792 551 LELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKD 627 (819)
Q Consensus 551 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~ 627 (819)
+++.+.. +.+...+..+...+...|+++.|...++.+.+..+. +...+..+...|...|++++|.+.|++.. +.+
T Consensus 144 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 221 (359)
T 3ieg_A 144 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 221 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 7777642 345666777777777788888888888877776543 66777777888888888888888777655 233
Q ss_pred hHhHH------------HHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-----hHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 628 VACWN------------SMICTNAHHGEPMKALLLFREMIIEGLEPNYI-----TFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 628 ~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
...|. .+...+...|++++|++.++++.+ ..|+.. .+..+..++.+.|++++|.+.+++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33333 235668888999999999999888 556643 24456678888999999999999888
Q ss_pred hcCCcc-CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC
Q 039792 691 GFGIEP-GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACN 746 (819)
Q Consensus 691 ~~g~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 746 (819)
+. .| +...+..+...+.+.+ +.+.|...++++++++|+++..+..|..++...
T Consensus 300 ~~--~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 300 QM--EPDNVNALKDRAEAYLIEE-MYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred Hh--CcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 73 23 3456666666665544 888999999999999999999888888776543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-16 Score=161.41 Aligned_cols=345 Identities=15% Similarity=0.121 Sum_probs=141.7
Q ss_pred HcCCChhhHHHHHhccCCCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCCCCCCchhH
Q 039792 98 SKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNVG 177 (819)
Q Consensus 98 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 177 (819)
-+.|++++|.+++++++.|+ +|+.|..++.+.|++++|++.|.+. +|..+|..++.+|...|++++|+...
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 36788999999999997764 9999999999999999999999754 67889999999999999998766544
Q ss_pred HHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCC
Q 039792 178 EQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVH 257 (819)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 257 (819)
+.. .+. .+++.+.+.|+.+|.|+|+++++.++++. |+..+|+.+...|...|.+++|..+|..+
T Consensus 85 ~~a----rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 QMA----RKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-------
T ss_pred HHH----HHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 433 332 45678899999999999999999988864 67789999999999999999999999977
Q ss_pred ChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHc
Q 039792 258 DKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQ 337 (819)
Q Consensus 258 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 337 (819)
..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .+......++..|.+
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQD 219 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHH
Confidence 36888888888888888888887766 267788888888888888888876666544 333334457777888
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhh--cCCCHHHHH
Q 039792 338 NSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYA--KCDSLTEAR 415 (819)
Q Consensus 338 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~ 415 (819)
.|++++|+.+++..... .+- ....|+-|.-.|+ +-+++.+..
T Consensus 220 ~G~~eEai~lLe~aL~l--e~a----------------------------------h~~~ftel~il~~ky~p~k~~ehl 263 (449)
T 1b89_A 220 RGYFEELITMLEAALGL--ERA----------------------------------HMGMFTELAILYSKFKPQKMREHL 263 (449)
T ss_dssp TTCHHHHHHHHHHHTTS--TTC----------------------------------CHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCC--cHH----------------------------------HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888888888776532 221 1112222222222 233444555
Q ss_pred HHHHhcCC--------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHH
Q 039792 416 KVFDVMAD--------RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLI 487 (819)
Q Consensus 416 ~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 487 (819)
+.|..-.. .+...|..+...|.+.++++.|....-+ . +|+...-........+..+.+.--+.....
T Consensus 264 ~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~---h--~~~a~~~~~f~~~~~kv~n~elyYkai~fy 338 (449)
T 1b89_A 264 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVELYYRAIQFY 338 (449)
T ss_dssp HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh---C--ChhhhhhHHHHHHHhchhHHHHHHHHHHHH
Confidence 55543222 2456788899999999999988774332 2 233333333333344444444333333333
Q ss_pred HHhCCccchhhHHHHHHHHHhcCChHHHHHHHHh
Q 039792 488 IKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDE 521 (819)
Q Consensus 488 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 521 (819)
+.. .+...|-|+.++...=+...+..+|+.
T Consensus 339 l~~----~p~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 339 LEF----KPLLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHH----CGGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred Hhc----CHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 321 223344444444444444444444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-16 Score=164.78 Aligned_cols=222 Identities=9% Similarity=0.042 Sum_probs=85.2
Q ss_pred HhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHH
Q 039792 204 AKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHA 283 (819)
Q Consensus 204 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 283 (819)
-+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996654 899999999999999999999965 3678899999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchH
Q 039792 284 HVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFAC 363 (819)
Q Consensus 284 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 363 (819)
...+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 45678899999999999999999988864 67779999999999999999999999976 478
Q ss_pred HHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 039792 364 SSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLS 443 (819)
Q Consensus 364 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 443 (819)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .+......++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 88888888888888888888776 367788888888888888888876666544 33333445777788888888
Q ss_pred HHHHHHHHHHh
Q 039792 444 EALDLFHEMRV 454 (819)
Q Consensus 444 ~A~~~~~~m~~ 454 (819)
+|+.+++....
T Consensus 225 Eai~lLe~aL~ 235 (449)
T 1b89_A 225 ELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 88888887654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-15 Score=157.28 Aligned_cols=260 Identities=9% Similarity=-0.027 Sum_probs=149.6
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA 571 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 571 (819)
+...+..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 344444555555555666666666555542 123344445555666666666666666665531 2234555555556
Q ss_pred HhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHH
Q 039792 572 ASNLG-SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 572 ~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 647 (819)
+...| +++.|...++.+.+..+. +...+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 66666 666666666666655433 45556666666666666666666666544 23345555566666666666666
Q ss_pred HHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCC-------ccCchHHHHHHHHhhcccchhhhH
Q 039792 648 LLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGI-------EPGMEHYASVVSLLGRNVWNVELG 718 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~-------~p~~~~y~~li~~l~r~~w~~~~a 718 (819)
++.+++..+ ..|+. ..+..+...+...|++++|...++++.+ ..- ......+..+...+.+.+ +.+.|
T Consensus 179 ~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A 255 (330)
T 3hym_B 179 ERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK-KYAEA 255 (330)
T ss_dssp HHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc-CHHHH
Confidence 666666665 44543 4555666666666666666666666655 210 122344555555554332 56666
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 719 RYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 719 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
...+++++++.|+++..+..++.+|...|++++|.+.+++.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666644
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-15 Score=155.85 Aligned_cols=286 Identities=12% Similarity=-0.028 Sum_probs=193.5
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHH
Q 039792 424 RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALI 503 (819)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 503 (819)
.+...+..+...+...|++++|+++|+++.+.. +. +...+..++
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~-----------------------------------~~~~~~~~~ 63 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PF-----------------------------------HASCLPVHI 63 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------------------------------CTTTHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC-----------------------------------ChhhHHHHH
Confidence 344556666666667777777777777765432 11 222333344
Q ss_pred HHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 039792 504 DAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQL-ENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLK 579 (819)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 579 (819)
..+...|+.++|...|+++.+ .+...|..+...+...| ++++|...|++..... +.+...+..+...+...|+++
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHH
Confidence 455555556666555555442 23455666666677777 7777777777776542 234556677777777777788
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 580 HGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 580 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
+|...++.+.+..+. +...+..+...|...|++++|.+.|++.. +.+...|..+...|...|++++|+..++++.+
T Consensus 143 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 143 QAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 887777777776544 45566667788888888888888887654 44567788888888888888888888888876
Q ss_pred cCC--------CCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHcc
Q 039792 657 EGL--------EPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISI 728 (819)
Q Consensus 657 ~g~--------~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~ 728 (819)
..- ..+..++..+..++...|++++|...+++..+.. ..+...+..+...+.+.+ +.+.|...+++++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMG-NFENAVDYFHTALGL 299 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHT-CHHHHHHHHHTTTTT
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhc-cHHHHHHHHHHHHcc
Confidence 310 1224577888888888888888888888887732 123445555665555443 788888889999999
Q ss_pred CCCCchhHHHHHHHHH-hCCCc
Q 039792 729 DPMDSGSYTLLSNTFA-CNSMW 749 (819)
Q Consensus 729 ~p~~~~~~~~l~~~y~-~~g~~ 749 (819)
+|+++..+..++..|. ..|+.
T Consensus 300 ~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 300 RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CSCCHHHHHHHHHHHHTTTTC-
T ss_pred CCCchHHHHHHHHHHHHHhCch
Confidence 9999999999999884 45554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=7e-15 Score=162.33 Aligned_cols=217 Identities=12% Similarity=0.041 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-----------
Q 039792 541 LENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK----------- 609 (819)
Q Consensus 541 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------- 609 (819)
|+.++|.+.+++..... +.+...+..+...+...|+++.|...+..+.+..+. +..++..+...|..
T Consensus 227 ~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~ 304 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLREN 304 (472)
T ss_dssp ---CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555555544431 233444555555555555555555555555555433 34444444444322
Q ss_pred --------cCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch----hHHHHHH-HH
Q 039792 610 --------CGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI----TFVGVLS-AC 673 (819)
Q Consensus 610 --------~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~-a~ 673 (819)
.+..+.|...|++.. +.+..+|..+...|...|++++|++.|++.++ +.|+.. .+..+.. ..
T Consensus 305 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~--~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 305 GMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS--KELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHH
Confidence 233567777777654 44567889999999999999999999999998 455432 2333333 34
Q ss_pred HccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHH
Q 039792 674 SHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAK 753 (819)
Q Consensus 674 ~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 753 (819)
.+.|+.++|++.|++..+ +.|+.....- ....++..+++.++.+|+++.+|..|+.+|...|++++|.
T Consensus 383 ~~~~~~~~Ai~~y~kal~--i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVK--INQKSREKEK----------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HTSSCHHHHHHHHHHHHH--SCCCCHHHHH----------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---
T ss_pred HHCCCHHHHHHHHHHHHh--cCcccHHHHH----------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 578999999999999887 3454322211 3445567788999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcCCCceeEE
Q 039792 754 QVRKKMDLDGLMKEAGRSWI 773 (819)
Q Consensus 754 ~~~~~m~~~g~~~~~g~s~i 773 (819)
+.+++..+.|..-....+|+
T Consensus 451 ~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 451 EDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp --------------------
T ss_pred HHHHHHHhcCCCCCcHhhcC
Confidence 99999988776544455555
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-13 Score=152.43 Aligned_cols=383 Identities=14% Similarity=0.061 Sum_probs=217.9
Q ss_pred chhHHHHHHHHhHh----CCChHHHHHHHhcccC-CCcccHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCcchH
Q 039792 293 DVSVINVLMDFYSK----CGRVKMARRLFDEIEV-KNIISWTTLIGGYMQ----NSFDREAMKLFTEMTRSGWKPDDFAC 363 (819)
Q Consensus 293 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 363 (819)
++..+..|-..|.. .+++++|...|++..+ .+...+..|-..|.. .++.++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444444455554 5556666665555432 233444445555555 555566666665555433 22222
Q ss_pred HHHHHHhcC----CcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhc----CCCHHHHHHHHHhcCC-CCcchHHHHHH
Q 039792 364 SSVLTSCGS----VEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAK----CDSLTEARKVFDVMAD-RNVVSYNAMIE 434 (819)
Q Consensus 364 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~ 434 (819)
..+-..+.. .++.++|...++...+.| +...+..|..+|.. .++.++|...|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 223222222 344444544444444433 22333334444433 4455555555544332 23334444444
Q ss_pred HHHh----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHh--
Q 039792 435 GYSK----EEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSK-- 508 (819)
Q Consensus 435 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-- 508 (819)
.|.. .++.++|+..|++.. +.| +...+..+..+|..
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~-----------------------------------~~~---~~~a~~~lg~~y~~g~ 233 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSA-----------------------------------TSG---DELGQLHLADMYYFGI 233 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHH-----------------------------------HTT---CHHHHHHHHHHHHHTS
T ss_pred HHhcCCCCCcCHHHHHHHHHHHH-----------------------------------HCC---CHHHHHHHHHHHHcCC
Confidence 4444 444555555554443 332 23344445555544
Q ss_pred --cCChHHHHHHHHhcCC-CCeeehhhhHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----C
Q 039792 509 --CFSNKDARLVFDEMNQ-RDIVVWNAMLLGYTQ----QLENEEAIKLYLELLLSQQRPNEFTFAALITAASNL-----G 576 (819)
Q Consensus 509 --~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----g 576 (819)
.++.++|...|++..+ .+...+..+...|.. .+++++|++.|++..+.| +...+..+-..+... +
T Consensus 234 g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 234 GVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAK 310 (490)
T ss_dssp SSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcC
Confidence 5566666666665543 344455555556665 677888888888777654 344555565666555 7
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhcCC-CCChHhHHHHHHHHHh----CCChHHHH
Q 039792 577 SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG---SLEDAYETFGSTT-WKDVACWNSMICTNAH----HGEPMKAL 648 (819)
Q Consensus 577 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~ 648 (819)
++++|...++...+.+ +...+..|..+|.+.| +.++|.+.|++.. ..+...+..|...|.. .+++++|+
T Consensus 311 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 311 NREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 8888888888888765 4456677777777756 7788888887765 4567788888888887 78888888
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCc-cC-chHHHHHHHHhhcccchhhhHHHHH
Q 039792 649 LLFREMIIEGLEPNYITFVGVLSACSH----AGLIEDGLDHFQSMAGFGIE-PG-MEHYASVVSLLGRNVWNVELGRYAA 722 (819)
Q Consensus 649 ~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~-p~-~~~y~~li~~l~r~~w~~~~a~~~~ 722 (819)
+.|++..+.| +...+..|...|.+ .++.++|...|++..+.+.. |+ ......+-.++.. +.+.++..+
T Consensus 388 ~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~---~~~~a~~~a 461 (490)
T 2xm6_A 388 IWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK---QLQQAELLS 461 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH---HHHHHHHHH
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh---HHHHHHHHH
Confidence 8888888754 45567777777777 78888888888888875532 21 1111112122211 445555566
Q ss_pred HHHHccCCC
Q 039792 723 EMAISIDPM 731 (819)
Q Consensus 723 ~~~~~~~p~ 731 (819)
++.++..|+
T Consensus 462 ~~~~~~~~~ 470 (490)
T 2xm6_A 462 QQYIEKYAP 470 (490)
T ss_dssp HHHHHHHCH
T ss_pred HHHHHHHHH
Confidence 666665554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-16 Score=163.44 Aligned_cols=292 Identities=12% Similarity=0.095 Sum_probs=160.4
Q ss_pred hhcCCCHHHHHH-HHHhcCC--C-----CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCc
Q 039792 405 YAKCDSLTEARK-VFDVMAD--R-----NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFS 476 (819)
Q Consensus 405 ~~~~g~~~~A~~-~~~~m~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 476 (819)
+.-.|++++|.. .|++... + +...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344466777776 6665432 1 24456677777777777777777777776542 2233334344444444444
Q ss_pred hHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHC
Q 039792 477 LESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLS 556 (819)
Q Consensus 477 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 556 (819)
++.|...+..+.+... .+..+|..+...|...|++++|++.|+++...
T Consensus 114 ~~~A~~~~~~al~~~~--------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 114 ELLAISALRRCLELKP--------------------------------DNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC--------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444444444433321 13334444555555555555555555555543
Q ss_pred CCCCCHH-HHH---------------HHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHH
Q 039792 557 QQRPNEF-TFA---------------ALITAASNLGSLKHGQQFHNHLIKLGLDF-DSFITSALIDMYAKCGSLEDAYET 619 (819)
Q Consensus 557 g~~p~~~-t~~---------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 619 (819)
. |+.. .+. ..+..+...|++++|...++.+.+..+.. +..++..+...|.+.|++++|.+.
T Consensus 162 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 162 T--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp S--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred C--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2 2111 110 01222335666666666666666654432 455666666677777777777776
Q ss_pred HhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCc
Q 039792 620 FGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIE 695 (819)
Q Consensus 620 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~ 695 (819)
|+++. +.+..+|..+...|...|++++|+..|+++.+ +.|+. .++..+..+|.+.|++++|...|+++.+. .
T Consensus 240 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~ 315 (368)
T 1fch_A 240 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM--Q 315 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--H
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 66544 33456677777777777777777777777766 45543 45666666777777777777776666541 1
Q ss_pred cCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 039792 696 PGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKK 758 (819)
Q Consensus 696 p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 758 (819)
|+.. ...-+..|..+..|..++.+|...|++++|..++++
T Consensus 316 ~~~~-----------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 316 RKSR-----------------------GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HTC-----------------------------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCC-----------------------CccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 1100 000012344488999999999999999999998764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.9e-14 Score=142.54 Aligned_cols=248 Identities=9% Similarity=-0.052 Sum_probs=200.6
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCe----eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 039792 504 DAYSKCFSNKDARLVFDEMNQRDI----VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLK 579 (819)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 579 (819)
.-....|++..|...++.....++ .....+..+|...|++++|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 344567888899988887765332 2445567889999999999987654 24567788888999999999999
Q ss_pred HHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 039792 580 HGQQFHNHLIKLGLDF-DSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEG 658 (819)
Q Consensus 580 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 658 (819)
.|.+.++.+...+..| +...+..+..+|...|++++|.+.+++ ..+...+..++..|.+.|+.++|.+.|+++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-- 158 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD-- 158 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 9999999998876444 566777788999999999999999999 56788999999999999999999999999998
Q ss_pred CCCCchhH---HHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchh
Q 039792 659 LEPNYITF---VGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGS 735 (819)
Q Consensus 659 ~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~ 735 (819)
..|+.... ..++..+...|++++|..+|+++.+. ...+...+..+...+.+.+ +.+.|+..++++++++|+++.+
T Consensus 159 ~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g-~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQG-RWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHH
T ss_pred hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHH
Confidence 46876422 22334455669999999999999984 2245566777777666554 8899999999999999999999
Q ss_pred HHHHHHHHHhCCCchH-HHHHHHHHHh
Q 039792 736 YTLLSNTFACNSMWAD-AKQVRKKMDL 761 (819)
Q Consensus 736 ~~~l~~~y~~~g~~~~-a~~~~~~m~~ 761 (819)
+..++.++...|++++ +.++++++.+
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999987 5688888765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-13 Score=152.09 Aligned_cols=209 Identities=12% Similarity=0.036 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHhCCccchhhHHHHHHHHHh-------cCChH-------HHHHHHHhcCC---C-CeeehhhhHHHHHhc
Q 039792 479 SSKQIHGLIIKYGVFLDVFAGSALIDAYSK-------CFSNK-------DARLVFDEMNQ---R-DIVVWNAMLLGYTQQ 540 (819)
Q Consensus 479 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 540 (819)
.+..+++..+.... .+...|..+...+.+ .|+++ +|..+|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 45556666665432 245566666666654 57765 77777777653 3 345677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHhcCCHHHHH
Q 039792 541 LENEEAIKLYLELLLSQQRPN-E-FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM-YAKCGSLEDAY 617 (819)
Q Consensus 541 g~~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~ 617 (819)
|++++|..+|++..+. .|+ . ..|......+.+.|+++.|..+++...+.... +...+...+.+ +...|+.++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHH
Confidence 7777887777777763 443 2 35666666666777777777777777765322 22333222222 23567777777
Q ss_pred HHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCC--chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 618 ETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEG-LEPN--YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 618 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+|++.. +.+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+......|+.+.+..+++++.+
T Consensus 412 ~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 412 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777654 3456677777777777777777777777777642 1222 12465666666667777777777777766
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=8e-17 Score=179.91 Aligned_cols=149 Identities=9% Similarity=0.095 Sum_probs=127.2
Q ss_pred CCcchhhHHHHHHHhcCChhHHHHHHhcC-------CCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHH
Q 039792 191 RDVYVGTSLMNLYAKNGSVDDAKFVFDGL-------MVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLS 263 (819)
Q Consensus 191 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 263 (819)
.-..+||+||++|||.|++++|.++|++| ..||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 33468999999999999999999999775 46899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCh-hhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhcccCC-----CcccHHHHHHHHHc
Q 039792 264 SVLSACSMLQFV-GGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVK-----NIISWTTLIGGYMQ 337 (819)
Q Consensus 264 ~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~ 337 (819)
++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+.+.|...|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999985 789999999999999999999999998887776666665555554421 23445556666766
Q ss_pred CC
Q 039792 338 NS 339 (819)
Q Consensus 338 ~g 339 (819)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 55
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-13 Score=151.72 Aligned_cols=176 Identities=7% Similarity=-0.001 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHhcCCC---C-ChHhHHHHHHHHHhC
Q 039792 580 HGQQFHNHLIKLGLDFDSFITSALIDMYAK-------CGSLE-------DAYETFGSTTW---K-DVACWNSMICTNAHH 641 (819)
Q Consensus 580 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 641 (819)
.+..++++++...+. +...|..++..+.+ .|+++ +|.++|++... | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 555666666665433 56666666666664 57765 67777766542 2 456677777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHH--HHHHhhcccchhh
Q 039792 642 GEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYAS--VVSLLGRNVWNVE 716 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~--li~~l~r~~w~~~ 716 (819)
|++++|.++|+++++ +.|+. ..|..++..+.+.|++++|.++|++..+. .|. ...|.. .+...... +.+
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~--~~~ 408 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSK--DKS 408 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTC--CHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcC--Chh
Confidence 777777777777776 56653 35666666666777777777777777652 122 122221 12111111 567
Q ss_pred hHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 717 LGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 717 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.|...++++++..|+++..|..++.++...|+.++|..++++..+.
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777776654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-16 Score=175.23 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=121.0
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchh
Q 039792 593 LDFDSFITSALIDMYAKCGSLEDAYETFGSTT-------WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYIT 665 (819)
Q Consensus 593 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 665 (819)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.||++.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33356689999999999999999999996643 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCC---------chh
Q 039792 666 FVGVLSACSHAGL-IEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMD---------SGS 735 (819)
Q Consensus 666 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~---------~~~ 735 (819)
|++||.++++.|+ .++|.++|++|.+.|+.||..+|+|+++..+|. ...++.+ +++|+- ..+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-----~vL~~Vr---kv~P~f~p~~~~~~~~~t 274 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-----TVLKAVH---KVKPTFSLPPQLPPPVNT 274 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-----HHHHHHG---GGCCCCCCCCCCCCCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-----HHHHHHH---HhCcccCCCCCCcccccc
Confidence 9999999999998 578999999999999999999999999877763 2222333 333321 223
Q ss_pred HHHHHHHHHhCC
Q 039792 736 YTLLSNTFACNS 747 (819)
Q Consensus 736 ~~~l~~~y~~~g 747 (819)
-.+|-++|...+
T Consensus 275 ~~LL~dl~s~d~ 286 (1134)
T 3spa_A 275 SKLLRDVYAKDG 286 (1134)
T ss_dssp CTTTHHHHCCCS
T ss_pred hHHHHHHHccCC
Confidence 446778888765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-14 Score=153.54 Aligned_cols=300 Identities=9% Similarity=-0.044 Sum_probs=218.3
Q ss_pred HhcCCcchhhHHH-HHHHHHHcCCC-C--ChhHHhHHhhhhhcCCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCC
Q 039792 369 SCGSVEALEQGRQ-VHAYSFKANIE-S--DNFVKNSLVDMYAKCDSLTEARKVFDVMAD---RNVVSYNAMIEGYSKEEK 441 (819)
Q Consensus 369 ~~~~~~~~~~a~~-~~~~~~~~g~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 441 (819)
++...++++.|.. .+....+.... | +...+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4556688888887 77655543221 1 345677888999999999999999999864 356789999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHh
Q 039792 442 LSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDE 521 (819)
Q Consensus 442 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 521 (819)
+++|+..|++..+.. +.+..++..+...+...|+++.|...+..+.+....... .+..+... . .
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~-------~-------~ 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH-LVTPAEEG-------A-------G 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG-GCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH-HHHHHHHH-------h-------h
Confidence 999999999997753 446677788888888888888888888888776543221 11111000 0 0
Q ss_pred cCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH
Q 039792 522 MNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQR-PNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFIT 600 (819)
Q Consensus 522 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 600 (819)
...+ ...+..+...+ ..|++++|+..|+++...... ++..++..+...+...|++++|...++.+.+..+. +...+
T Consensus 178 ~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~ 254 (368)
T 1fch_A 178 GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLW 254 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHH
Confidence 0000 11222333334 889999999999999875322 15788899999999999999999999999987654 67889
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC------------chh
Q 039792 601 SALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN------------YIT 665 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------------~~t 665 (819)
..+...|.+.|++++|.+.|+++. +.+...|..+...|...|++++|...|+++.+ +.|+ ..+
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN--MQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHTC------CCCCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCCCccccccchhhHH
Confidence 999999999999999999999865 45678899999999999999999999999987 4443 367
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 039792 666 FVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 666 ~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
|..+..++...|++++|..++++.
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHhCChHhHHHhHHHH
Confidence 999999999999999999887643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-12 Score=145.35 Aligned_cols=349 Identities=11% Similarity=0.033 Sum_probs=246.8
Q ss_pred hhHHhHHhhhhhc----CCCHHHHHHHHHhcCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhHHH
Q 039792 395 NFVKNSLVDMYAK----CDSLTEARKVFDVMAD-RNVVSYNAMIEGYSK----EEKLSEALDLFHEMRVGFVPPGLLTFV 465 (819)
Q Consensus 395 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 465 (819)
+.....|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 115 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQ 115 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3334444444444 5666666666665433 344555566666665 666666776666665543 333444
Q ss_pred HHHHHhhc----cCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHh----cCChHHHHHHHHhcCC-CCeeehhhhHHH
Q 039792 466 SLLGLSSS----VFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSK----CFSNKDARLVFDEMNQ-RDIVVWNAMLLG 536 (819)
Q Consensus 466 ~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 536 (819)
.+-..+.. .++.++|...++...+.| +...+..|...|.. .++.++|.+.|++..+ .+...+..+...
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444444 556677777777666655 44556666677766 6778888888877654 455667777777
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039792 537 YTQ----QLENEEAIKLYLELLLSQQRPNEFTFAALITAASN----LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYA 608 (819)
Q Consensus 537 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 608 (819)
|.. .+++++|++.|++..+.| +...+..+...+.. .+++++|..+++...+.| +...+..+..+|.
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 266 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILE 266 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 777 788889999988888764 45566666666654 788899999998888765 4556677777887
Q ss_pred h----cCCHHHHHHHHhcCC-CCChHhHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccC-
Q 039792 609 K----CGSLEDAYETFGSTT-WKDVACWNSMICTNAHH-----GEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAG- 677 (819)
Q Consensus 609 ~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g- 677 (819)
. .++.++|.+.|++.. ..+...+..|...|... ++.++|+..|++..+.| +...+..+...|...|
T Consensus 267 ~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 267 QGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGS 343 (490)
T ss_dssp HTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Confidence 7 889999999998766 44667788888888887 89999999999998854 3456777777777656
Q ss_pred --CHHHHHHHHHHHHhcCCccCchHHHHHHHHhhc----ccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHh----CC
Q 039792 678 --LIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGR----NVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC----NS 747 (819)
Q Consensus 678 --~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r----~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g 747 (819)
+.++|.++|++..+.| +...+..+-.+|-. .. |.+.|...++++.+. .++..+..|+.+|.. .+
T Consensus 344 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKK-DEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC
T ss_pred cccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCC
Confidence 7889999999988764 33445555555543 11 888999999998885 468899999999998 89
Q ss_pred CchHHHHHHHHHHhCCC
Q 039792 748 MWADAKQVRKKMDLDGL 764 (819)
Q Consensus 748 ~~~~a~~~~~~m~~~g~ 764 (819)
++++|...+++..+.|.
T Consensus 418 d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 99999999999988763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-14 Score=144.71 Aligned_cols=247 Identities=9% Similarity=-0.035 Sum_probs=171.0
Q ss_pred CCCHHHHHHHHHhcCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHH
Q 039792 408 CDSLTEARKVFDVMADRN----VVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQI 483 (819)
Q Consensus 408 ~g~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 483 (819)
.|++..|...++.....+ ......+..+|...|++++|+..++. .-+|+..++..+...+...++.+.+...
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 455556655555544322 11233345566666666666654433 1334445555555556666666666666
Q ss_pred HHHHHHhCCcc-chhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 039792 484 HGLIIKYGVFL-DVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNE 562 (819)
Q Consensus 484 ~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 562 (819)
++.+...+..| +...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+. .|+.
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~ 163 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDA 163 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCc
Confidence 66665554333 344556667888899999999999988 456678888888999999999999999999875 3554
Q ss_pred HHH---HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHH
Q 039792 563 FTF---AALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMIC 636 (819)
Q Consensus 563 ~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 636 (819)
... ...+..+...|++++|..+++.+.+..+ .+...++.+..+|.+.|++++|.+.|++.. +.+..+|..++.
T Consensus 164 ~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~ 242 (291)
T 3mkr_A 164 TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVV 242 (291)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 321 1233444456889999999999988754 478888889999999999999999998865 446778888888
Q ss_pred HHHhCCChHH-HHHHHHHHHHcCCCCCchh
Q 039792 637 TNAHHGEPMK-ALLLFREMIIEGLEPNYIT 665 (819)
Q Consensus 637 ~~~~~g~~~~-A~~~~~~m~~~g~~p~~~t 665 (819)
.+...|+.++ +.++++++++ +.|+...
T Consensus 243 ~~~~~g~~~eaa~~~~~~~~~--~~P~~~~ 270 (291)
T 3mkr_A 243 LSQHLGKPPEVTNRYLSQLKD--AHRSHPF 270 (291)
T ss_dssp HHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence 8888888865 5678888888 7787653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=153.69 Aligned_cols=258 Identities=13% Similarity=-0.051 Sum_probs=150.6
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHH
Q 039792 425 NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALID 504 (819)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 504 (819)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+.+.... +...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 44567788888888888888888888876542 334556666666666666666666666666665422 3555666666
Q ss_pred HHHhcCChHHHHHHHHhcCC--C-C----------eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 039792 505 AYSKCFSNKDARLVFDEMNQ--R-D----------IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQR-PNEFTFAALIT 570 (819)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~--~-~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 570 (819)
.|.+.|++++|...|+++.+ | + ...+..+...|...|++++|+..|+++...... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 66666666666666665543 1 0 112233455566666666666666666654211 14556666666
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 647 (819)
.+...|++++|...++.+.+..+. +..++..+..+|.+.|++++|.+.|+++. +.+..+|..+...|...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 666666666666666666665433 45566666666666666666666666544 23455666666666666666666
Q ss_pred HHHHHHHHHcCCCCC-------------chhHHHHHHHHHccCCHHHHHHHHH
Q 039792 648 LLLFREMIIEGLEPN-------------YITFVGVLSACSHAGLIEDGLDHFQ 687 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~~ 687 (819)
...|+++.+ +.|+ ...|..+..++...|+.+.+..+.+
T Consensus 301 ~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 301 VSNFLTALS--LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHH--HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHH--hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 666666655 2222 3445666666666666665555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=153.58 Aligned_cols=256 Identities=12% Similarity=0.088 Sum_probs=132.2
Q ss_pred hHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHH
Q 039792 462 LTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYT 538 (819)
Q Consensus 462 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 538 (819)
..+..+...+...|+++.|...++.+.+.... +...+..+...|.+.|++++|...|+++.+ .+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 33555555555666666666666666554332 344555555555555555555555555432 23445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHH-HH----------HHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHH
Q 039792 539 QQLENEEAIKLYLELLLSQQRPNEFT-FA----------ALITAASNLGSLKHGQQFHNHLIKLGLDF-DSFITSALIDM 606 (819)
Q Consensus 539 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~----------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~ 606 (819)
..|++++|+..|+++.+. .|+... +. .+...+...|++++|..+++.+.+..+.. +..++..+...
T Consensus 145 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 555555555555555542 222111 11 11334444555555555555555443321 34444455555
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHH
Q 039792 607 YAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 682 (819)
|.+.|++++|.+.|+++. +.+..+|+.+...|...|++++|++.|+++.+ +.|+. .++..+..+|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHH
Confidence 555555555555554433 22344455555555555555555555555544 33432 3444444455555555555
Q ss_pred HHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCC------------CchhHHHHHHHHHhCCCch
Q 039792 683 LDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPM------------DSGSYTLLSNTFACNSMWA 750 (819)
Q Consensus 683 ~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~ 750 (819)
...| ++++++.|+ +...|..|+.+|...|+.+
T Consensus 301 ~~~~------------------------------------~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 301 VSNF------------------------------------LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp HHHH------------------------------------HHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred HHHH------------------------------------HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 5554 444444443 4678999999999999999
Q ss_pred HHHHHHHH
Q 039792 751 DAKQVRKK 758 (819)
Q Consensus 751 ~a~~~~~~ 758 (819)
.+.++.++
T Consensus 345 ~a~~~~~~ 352 (365)
T 4eqf_A 345 LFQAANLG 352 (365)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99887664
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-14 Score=148.70 Aligned_cols=257 Identities=11% Similarity=0.005 Sum_probs=167.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039792 497 FAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAAS 573 (819)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 573 (819)
..+..+...+...|++++|..+|+++.+ .+...|..+...+...|++++|...|++..+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3344455556666666666666665542 234455666666666677777777776666542 335556666666667
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHH--------------HH-HHHhcCCHHHHHHHHhcCC---CCChHhHHHHH
Q 039792 574 NLGSLKHGQQFHNHLIKLGLDFDSFITSAL--------------ID-MYAKCGSLEDAYETFGSTT---WKDVACWNSMI 635 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 635 (819)
..|++++|...++.+.+..+. +...+..+ .. .+...|++++|.+.++++. +.+...|..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 777777777777766665433 22222222 22 3666677777777777654 34566777777
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccch
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWN 714 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~ 714 (819)
..|...|++++|++.++++.+ ..|+ ..++..+...+...|++++|...++++.+.. ..+...+..+...+.+.+ +
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g-~ 255 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS-Q 255 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-C
T ss_pred HHHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc-c
Confidence 777777777777777777776 4554 3567777777777777777777777776621 112344555555554433 6
Q ss_pred hhhHHHHHHHHHccCCC------------CchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 715 VELGRYAAEMAISIDPM------------DSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 715 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
.+.|...+++++++.|+ ++..|..++.+|...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77777778888888887 7889999999999999999999988644
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=142.98 Aligned_cols=256 Identities=11% Similarity=-0.091 Sum_probs=163.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHh
Q 039792 429 YNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSK 508 (819)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 508 (819)
|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...+..+.+.... +...+..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHH
Confidence 3334444444444444444444443321 112333333444444444444444444444443211 34445555555666
Q ss_pred cCChHHHHHHHHhcCC--C-Ceeehhhh--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039792 509 CFSNKDARLVFDEMNQ--R-DIVVWNAM--------------LL-GYTQQLENEEAIKLYLELLLSQQRPNEFTFAALIT 570 (819)
Q Consensus 509 ~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 570 (819)
.|++++|.+.|+++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+..++..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 6666666666655432 1 11122111 11 2666788888888888887653 346777888888
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 647 (819)
.+...|++++|...++.+.+..+. +...+..+...|.+.|++++|.+.|+++. +.+..+|..+...|...|++++|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 888889999999988888887644 67788888888888899999988888765 44677888888888889999999
Q ss_pred HHHHHHHHHcCCCCC-------------chhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 648 LLLFREMIIEGLEPN-------------YITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
.+.|+++.+ +.|+ ..++..+..++...|++++|..++++..
T Consensus 260 ~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 260 AKQLVRAIY--MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHH--HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHH--hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999988887 4555 3567788888888899988888876543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-13 Score=132.77 Aligned_cols=191 Identities=12% Similarity=0.012 Sum_probs=114.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHH
Q 039792 563 FTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNA 639 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 639 (819)
..+..+...+...|++++|...++.+++..+. +...+..+...|.+.|++++|...|++.. +.+...|..+...|.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 33444444444444445554444444444332 44444445555555555555555554433 223445555555555
Q ss_pred hC-----------CChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHH
Q 039792 640 HH-----------GEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSL 707 (819)
Q Consensus 640 ~~-----------g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 707 (819)
.. |++++|+..|++.++ +.|+. ..+..+..++...|++++|+..|++..+.. .+...+..+..+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 55 788888888888877 66764 567777778888888888888888887744 455556666655
Q ss_pred hhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 708 LGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
+...+ +.+.|...++++++++|+++..+..++.+|...|++++|.+.+++.
T Consensus 161 ~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMG-RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55443 7788888889999999999999999999999999999999988754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-12 Score=129.91 Aligned_cols=246 Identities=12% Similarity=0.028 Sum_probs=188.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN--EFTFAALITAA 572 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~ 572 (819)
........+...|++++|...|++..+ | +...|..+...|...|++++|++.|++..+....|+ ...|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344566778888999999999988754 3 455788888999999999999999999987432222 34578888999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHH
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALL 649 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 649 (819)
...|++++|...++.+.+..+. +...+..+...|.+.|++++|.+.|++.. +.+...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765 67889999999999999999999999877 3456678877734445569999999
Q ss_pred HHHHHHHcCCCCCc-hhHHHHHHHHHccCC---HHHHHHHHHHHHh-cCCccCc------hHHHHHHHHhhcccchhhhH
Q 039792 650 LFREMIIEGLEPNY-ITFVGVLSACSHAGL---IEDGLDHFQSMAG-FGIEPGM------EHYASVVSLLGRNVWNVELG 718 (819)
Q Consensus 650 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~---~~~a~~~~~~m~~-~g~~p~~------~~y~~li~~l~r~~w~~~~a 718 (819)
.|+++.+ +.|+. ..+..+..++...|+ +++|...+++..+ ..-.|+. ..|..+...+.+.+ +.+.|
T Consensus 164 ~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A 240 (272)
T 3u4t_A 164 SFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR-DKVKA 240 (272)
T ss_dssp HHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC-CHHHH
Confidence 9999998 67865 567778888888888 8889999999887 4444442 34444555554333 88888
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhCC
Q 039792 719 RYAAEMAISIDPMDSGSYTLLSNTFACNS 747 (819)
Q Consensus 719 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 747 (819)
...++++++++|+|+.++..+..+....+
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 88999999999988888887776665544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-12 Score=130.05 Aligned_cols=221 Identities=13% Similarity=0.055 Sum_probs=163.1
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--c----hhHHHH
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDF--D----SFITSA 602 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~~~ 602 (819)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+..+.. + ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34556666777777777777777777665 666777777777777888888887777776643321 1 467777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLI 679 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 679 (819)
+...|.+.|++++|.+.|++.. .|+. ..+...|++++|++.++++.. ..|+. ..+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCH
Confidence 7788888888888888887765 3442 345566778888888888877 56654 4677777788888888
Q ss_pred HHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 680 EDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 680 ~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
++|...++++.+.. ..+...|..+...+.+.+ +.+.|...+++++++.|+++..|..++.+|...|++++|.+.+++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLM-SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888888887722 113445556666655443 7788888888999999999999999999999999999999999988
Q ss_pred HhC
Q 039792 760 DLD 762 (819)
Q Consensus 760 ~~~ 762 (819)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-11 Score=131.71 Aligned_cols=364 Identities=10% Similarity=-0.053 Sum_probs=179.5
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHC-----C--CCC-CcchHHHHHHHhcCCcchhhHHHHHHHHHHcC------
Q 039792 325 IISWTTLIGGYMQNSFDREAMKLFTEMTRS-----G--WKP-DDFACSSVLTSCGSVEALEQGRQVHAYSFKAN------ 390 (819)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------ 390 (819)
...||.|...+...|+.++|++.|++..+. + ..| ...+|..+-..+...|++++|...++.+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 446888888888999999999999886541 1 122 23445555556666666666666665554321
Q ss_pred CCC-ChhHHhHHhhhhhc--CCCHHHHHHHHHhcCC--CC-cchHHHHHHH---HHhcCChhHHHHHHHHHHhCCCCCCh
Q 039792 391 IES-DNFVKNSLVDMYAK--CDSLTEARKVFDVMAD--RN-VVSYNAMIEG---YSKEEKLSEALDLFHEMRVGFVPPGL 461 (819)
Q Consensus 391 ~~~-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~--~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~ 461 (819)
..+ ...++..+..++.+ .+++++|...|++..+ |+ ...+..+... +...++.++|++.+++
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~---------- 200 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ---------- 200 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH----------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH----------
Confidence 001 12222222222222 2334555555544332 21 2222222222 2223444444444444
Q ss_pred hHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHH----hcCChHHHHHHHHhcCC---CCeeehhhhH
Q 039792 462 LTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYS----KCFSNKDARLVFDEMNQ---RDIVVWNAML 534 (819)
Q Consensus 462 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~---~~~~~~~~li 534 (819)
.++.... +...+..+...+. ..++.++|.+.+++... .+...+..+.
T Consensus 201 -------------------------al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg 254 (472)
T 4g1t_A 201 -------------------------AIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAA 254 (472)
T ss_dssp -------------------------HHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred -------------------------HhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 4433222 2222222222222 22344555555554332 2334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-------------------cCChHHHHHHHHHHHHhCCC
Q 039792 535 LGYTQQLENEEAIKLYLELLLSQQRP-NEFTFAALITAASN-------------------LGSLKHGQQFHNHLIKLGLD 594 (819)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~-------------------~g~~~~a~~~~~~~~~~~~~ 594 (819)
..|...|++++|+..|++..+. .| +..++..+..++.. .+..+.|...++...+..+.
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 332 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN 332 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc
Confidence 5566666666666666665543 23 23333333222211 12356777888888877654
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChH----hHHHHHH-HHHhCCChHHHHHHHHHHHHcCCCCCchhHH
Q 039792 595 FDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVA----CWNSMIC-TNAHHGEPMKALLLFREMIIEGLEPNYITFV 667 (819)
Q Consensus 595 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~----~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 667 (819)
+...+..+...|.+.|++++|.+.|++.. .++.. .+..+.. .+...|+.++|+..|++.++ +.|+.....
T Consensus 333 -~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~ 409 (472)
T 4g1t_A 333 -LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKE 409 (472)
T ss_dssp -TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHH
T ss_pred -hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHH
Confidence 66778889999999999999999998765 33332 2233322 33567999999999999998 888765433
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHH
Q 039792 668 GVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLS 740 (819)
Q Consensus 668 ~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~ 740 (819)
..+ +.+.++++..... ...+...|..+-.++...+ +.+.|...+++++++.|.+|.++.-++
T Consensus 410 ~~~---------~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g-~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 410 KMK---------DKLQKIAKMRLSK-NGADSEALHVLAFLQELNE-KMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHH---------HHHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHH-HCC------------------------
T ss_pred HHH---------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 222 3344455555541 1234556766666665443 889999999999999999988776554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.7e-12 Score=124.31 Aligned_cols=223 Identities=10% Similarity=0.026 Sum_probs=136.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCcc--chhhHHHHHHH
Q 039792 428 SYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFL--DVFAGSALIDA 505 (819)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~ 505 (819)
.|..+...+...|++++|+..|++..+.. .+...+..+...+...|+++.|...+..+.+..... +..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 45555666666666667766666665544 444445445555555555555555554444322110 000
Q ss_pred HHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 039792 506 YSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFH 585 (819)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 585 (819)
.....|..+...|...|++++|+..|++.... .|+. ..+...|+++.|...+
T Consensus 77 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 77 -------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKA 128 (258)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHH
Confidence 00234444555556666666666666666553 3332 2234455666777777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 586 NHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
+.+.+..+. +...+..+...|...|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ ..|+
T Consensus 129 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~ 205 (258)
T 3uq3_A 129 EAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPN 205 (258)
T ss_dssp HHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHH
Confidence 666665432 55566677777777777777777777654 44566777788888888888888888888877 4565
Q ss_pred -chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 663 -YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 663 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..++..+..++...|++++|.+.+++..+
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35677777788888888888888887766
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-11 Score=124.77 Aligned_cols=219 Identities=12% Similarity=-0.050 Sum_probs=167.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 039792 538 TQQLENEEAIKLYLELLLSQQR---PNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLE 614 (819)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 614 (819)
...|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+..+. +...+..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 3457788888888888875321 13566777888888889999999999888887654 6778888888999999999
Q ss_pred HHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 615 DAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 615 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+|.+.|++.. +.+...|..+...|...|++++|++.|+++.+ +.|+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999888766 44677888888999999999999999999988 677776666666666778899999999988776
Q ss_pred cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCC----CchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 692 FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPM----DSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 692 ~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.. .++...+......+++. +.+.+...++++++..|. ++..+..++.+|...|++++|...+++..+.
T Consensus 173 ~~-~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 173 KS-DKEQWGWNIVEFYLGNI--SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HS-CCCSTHHHHHHHHTTSS--CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CcchHHHHHHHHHHHhc--CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 21 23344444443444443 567778888888877764 3678889999999999999999999988754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=7.1e-12 Score=126.79 Aligned_cols=221 Identities=6% Similarity=-0.108 Sum_probs=156.7
Q ss_pred eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 039792 528 VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMY 607 (819)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 607 (819)
..|..+...|...|++++|+..|++..... +.+..++..+...+...|++++|...++.+++..+. +...+..+..+|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHH
Confidence 455666677777777888888887777642 335677777888888888888888888888877544 567788888888
Q ss_pred HhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHH
Q 039792 608 AKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDH 685 (819)
Q Consensus 608 ~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 685 (819)
.+.|++++|.+.|+++. .|+...+...+..+...|++++|+..+++.... .|+......++..+...+..++|...
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGWNIVEFYLGNISEQTLMER 199 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHHHHHHHHTTSSCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888888888766 444444444445556678999999999888773 45444444577778888888999988
Q ss_pred HHHHHhcCC--ccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHH
Q 039792 686 FQSMAGFGI--EPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVR 756 (819)
Q Consensus 686 ~~~m~~~g~--~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 756 (819)
+++...... .|+ ...+..+...+.+.+ +.+.|...++++++++|++...+ +.++...|++++|.+-+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLG-DLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 888765221 111 345555556555443 88999999999999999875544 66778888888887765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-10 Score=116.76 Aligned_cols=221 Identities=12% Similarity=-0.048 Sum_probs=154.1
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASN----LGSLKHGQQFHNHLIKLGLDFDSFITSALI 604 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 604 (819)
++..+...|...|++++|+..|++..+. -+...+..+...+.. .+++++|...++...+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4445556666667777777777776652 234555666666666 777777777777777665 556666777
Q ss_pred HHHHh----cCCHHHHHHHHhcCC-CCChHhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc
Q 039792 605 DMYAK----CGSLEDAYETFGSTT-WKDVACWNSMICTNAH----HGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH 675 (819)
Q Consensus 605 ~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 675 (819)
.+|.. .|++++|.+.|++.. ..+..++..+...|.. .|++++|++.|++..+.+ +...+..+...+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHc
Confidence 77777 777777777777655 3456677777777777 778888888888877744 44556666666766
Q ss_pred ----cCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhc----ccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHh--
Q 039792 676 ----AGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGR----NVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC-- 745 (819)
Q Consensus 676 ----~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r----~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~-- 745 (819)
.+++++|...|++..+.+. ...+..+..+|.+ .. +.+.|...++++++..| +..+..|+.+|..
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLKD---SPGCFNAGNMYHHGEGATK-NFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCSSCC-CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 7788888888887776532 2344444444433 22 77788888888888765 6788889999998
Q ss_pred --CCCchHHHHHHHHHHhCCC
Q 039792 746 --NSMWADAKQVRKKMDLDGL 764 (819)
Q Consensus 746 --~g~~~~a~~~~~~m~~~g~ 764 (819)
.|++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 8999999999988877653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.5e-11 Score=128.33 Aligned_cols=367 Identities=12% Similarity=0.013 Sum_probs=209.5
Q ss_pred cCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCH---HHHHHHHHhcCCCCcchHHHHHHHHHhcC-----Ch
Q 039792 371 GSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSL---TEARKVFDVMADRNVVSYNAMIEGYSKEE-----KL 442 (819)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g-----~~ 442 (819)
.+.|++++|.+++....+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+ ++
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred HhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence 34455555555555555544 223334455555556666 67777777766555556666666444444 56
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCch---HhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCC----hHHH
Q 039792 443 SEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSL---ESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFS----NKDA 515 (819)
Q Consensus 443 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~----~~~A 515 (819)
++|+..|++..+.|... .+..+-..+...+.. ..+.+.+......| ++.....|...|...+. .+.+
T Consensus 91 ~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred HHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 77777777777655433 333333334333332 23333344344444 35556667777777663 4455
Q ss_pred HHHHHhcCCCCeeehhhhHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CChHHHHHHHHHH
Q 039792 516 RLVFDEMNQRDIVVWNAMLLGYTQQL---ENEEAIKLYLELLLSQQRPNEFTFAALITAASNL----GSLKHGQQFHNHL 588 (819)
Q Consensus 516 ~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~~~ 588 (819)
..+++.....++..+..|...|...| +.++|++.|++..+.| .++...+..+-..+... +++++|..+++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 56666666666668888888888888 8888888888888776 44555445555556544 6888888888887
Q ss_pred HHhCCCCchhHHHHHHHH-H--HhcCCHHHHHHHHhcCC-CCChHhHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCC
Q 039792 589 IKLGLDFDSFITSALIDM-Y--AKCGSLEDAYETFGSTT-WKDVACWNSMICTNAHHG-----EPMKALLLFREMIIEGL 659 (819)
Q Consensus 589 ~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~ 659 (819)
. .| ++..+..|..+ | ...|+.++|.+.|++.. ..+..++..|...|. .| ++++|++.|++.. .|
T Consensus 244 a-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g- 316 (452)
T 3e4b_A 244 A-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR- 316 (452)
T ss_dssp G-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT-
T ss_pred c-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC-
Confidence 7 33 55666667776 4 46788888888888766 446677777777776 45 8888888888875 22
Q ss_pred CCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcc---cchhhhHHHHHHHHHccCCCC
Q 039792 660 EPNYITFVGVLSACSH----AGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN---VWNVELGRYAAEMAISIDPMD 732 (819)
Q Consensus 660 ~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~---~w~~~~a~~~~~~~~~~~p~~ 732 (819)
+......|...|.. ..+.++|...|++..+.|... ....+-.+|-.. .-|.+.|...++++.+..+.
T Consensus 317 --~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~- 390 (452)
T 3e4b_A 317 --EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS---ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP- 390 (452)
T ss_dssp --CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT---HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-
T ss_pred --CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-
Confidence 34566666666665 338888888888887766422 223333333211 01778888888888876543
Q ss_pred chhHHHHHHHHHh--CCCchHHHHHHHHHHh
Q 039792 733 SGSYTLLSNTFAC--NSMWADAKQVRKKMDL 761 (819)
Q Consensus 733 ~~~~~~l~~~y~~--~g~~~~a~~~~~~m~~ 761 (819)
..-..+..+... .++.++|.++.++.++
T Consensus 391 -~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 391 -EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp -HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 344445444332 2455566666555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-11 Score=127.77 Aligned_cols=244 Identities=9% Similarity=0.040 Sum_probs=195.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039792 496 VFAGSALIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLE-NEEAIKLYLELLLSQQRPNEFTFAALITA 571 (819)
Q Consensus 496 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 571 (819)
...+..+...+.+.|++++|...|++..+ | +...|+.+...+...|+ +++|+..|++..... +-+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 44566677778888889999988887764 3 56688888888999996 999999999988752 3366788888888
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHh-CCChHHH
Q 039792 572 ASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAH-HGEPMKA 647 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-~g~~~~A 647 (819)
+...|++++|...++.+++..+. +...|..+..++.+.|++++|.+.|+++. ..+...|+.+...+.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999999998766 78888999999999999999999998877 4567889999999988 6666777
Q ss_pred -----HHHHHHHHHcCCCCCc-hhHHHHHHHHHccC--CHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhccc------
Q 039792 648 -----LLLFREMIIEGLEPNY-ITFVGVLSACSHAG--LIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNV------ 712 (819)
Q Consensus 648 -----~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~------ 712 (819)
++.|++.++ +.|+. ..|..+...+.+.| ++++|.+.+.++ + ..|+ ...+..+.++|.+.+
T Consensus 255 ~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 255 VLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccc
Confidence 588999988 78865 57888888888888 589999988887 2 3444 455667777776531
Q ss_pred -c-hhhhHHHHHHHH-HccCCCCchhHHHHHHHHHhC
Q 039792 713 -W-NVELGRYAAEMA-ISIDPMDSGSYTLLSNTFACN 746 (819)
Q Consensus 713 -w-~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~~ 746 (819)
- ..+.|...++++ ++++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 0 247889999999 999999999999888876543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.3e-11 Score=118.59 Aligned_cols=195 Identities=11% Similarity=-0.001 Sum_probs=112.0
Q ss_pred eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039792 527 IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM 606 (819)
Q Consensus 527 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 606 (819)
...|..+...|...|++++|.+.|+++.... +.+...+..+...+...|++++|...++.+.+..+. +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 3455556666666666666666666665542 234555555666666666666666666666655433 44555555555
Q ss_pred HHhcCCHHHHHHHHhcCCC----C-ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHH
Q 039792 607 YAKCGSLEDAYETFGSTTW----K-DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIE 680 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 680 (819)
|.+.|++++|.+.|+++.. | +...|..+...|...|++++|++.|+++.+ ..|+ ...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCCHH
Confidence 6666666666655555432 1 233455555555555555555555555555 2343 234444555555555555
Q ss_pred HHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 681 DGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 681 ~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
+|..+ ++++++..|+++..+..++.+|...|++++|.+.++++.
T Consensus 193 ~A~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 193 PARQY------------------------------------YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHH------------------------------------HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHH------------------------------------HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55544 555555666666667777777777777777777777665
Q ss_pred h
Q 039792 761 L 761 (819)
Q Consensus 761 ~ 761 (819)
+
T Consensus 237 ~ 237 (252)
T 2ho1_A 237 R 237 (252)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-11 Score=121.17 Aligned_cols=211 Identities=11% Similarity=0.091 Sum_probs=119.8
Q ss_pred eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039792 527 IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM 606 (819)
Q Consensus 527 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 606 (819)
...|..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...++.+.+..+. +...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHH
Confidence 445666666777777788888877777764 2335666777777777777888888877777776543 56666777777
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHH
Q 039792 607 YAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 682 (819)
|...|++++|.+.|+++. +.+...|..+...|...|++++|++.++++.+ ..|+ ...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777776654 34566677777777777777777777777776 4453 34566666677777777777
Q ss_pred HHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 683 LDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 683 ~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
...++++.+.. ..+...+..+...+.+.+ +.+.|...++++++++|+++..+..++.+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKE-NREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 77766665421 011223333433333322 555555555555556665555555554443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.4e-11 Score=128.87 Aligned_cols=377 Identities=11% Similarity=-0.007 Sum_probs=192.5
Q ss_pred hhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCCh---HHHHHHHhcccCCCcccHHHHHHHHHcCC-----C
Q 039792 269 CSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRV---KMARRLFDEIEVKNIISWTTLIGGYMQNS-----F 340 (819)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 340 (819)
+.+.|++++|.+++....+.| ++..+..|-.+|...|+. ++|...|++..+.+...+..|...+...+ +
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 344455556666665555554 223333444555556666 77877777776556666666666455554 5
Q ss_pred hhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchh---hHHHHHHHHHHcCCCCChhHHhHHhhhhhcCC----CHHH
Q 039792 341 DREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALE---QGRQVHAYSFKANIESDNFVKNSLVDMYAKCD----SLTE 413 (819)
Q Consensus 341 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~ 413 (819)
+++|+..|++..+.|.. ..+..+-..+...+..+ .+.+.+......|. ......|...|...+ ..+.
T Consensus 90 ~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHH
Confidence 67888888887775432 24444444444333322 23333433333332 334444555555555 3444
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHh
Q 039792 414 ARKVFDVMADRNVVSYNAMIEGYSKEE---KLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKY 490 (819)
Q Consensus 414 A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 490 (819)
+..+++.....+...+..|...|...| +.++|++.|++..+.|...
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~------------------------------- 212 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT------------------------------- 212 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-------------------------------
Confidence 555566655555567777777777777 6677777776665554221
Q ss_pred CCccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039792 491 GVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALIT 570 (819)
Q Consensus 491 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 570 (819)
...+..|..+|... ....+++++|++.|++.. .| +...+..+-.
T Consensus 213 -----a~~~~~Lg~~y~~g---------------------------~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~ 256 (452)
T 3e4b_A 213 -----AQRVDSVARVLGDA---------------------------TLGTPDEKTAQALLEKIA-PG---YPASWVSLAQ 256 (452)
T ss_dssp -----HHHHHHHHHHHTCG---------------------------GGSSCCHHHHHHHHHHHG-GG---STHHHHHHHH
T ss_pred -----HHHHHHHHHHHhCC---------------------------CCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHH
Confidence 11112222222211 001134555555555544 22 2222333333
Q ss_pred H-H--hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-----CHHHHHHHHhcCCCCChHhHHHHHHHHHh--
Q 039792 571 A-A--SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG-----SLEDAYETFGSTTWKDVACWNSMICTNAH-- 640 (819)
Q Consensus 571 ~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~li~~~~~-- 640 (819)
. + ...+++++|...++...+.| +...+..|..+|. .| +.++|.+.|++....+...+..|...|..
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGY 332 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCC
Confidence 2 2 34666777777777766655 4555666666666 44 77888888877664455666666666665
Q ss_pred --CCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccch
Q 039792 641 --HGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH----AGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWN 714 (819)
Q Consensus 641 --~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~ 714 (819)
..+.++|+..|++..+.| +......|...|.. ..+.++|...|+...+.|..........+...+... +
T Consensus 333 g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~--~ 407 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPA--Q 407 (452)
T ss_dssp TSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHH--H
T ss_pred CCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHH--H
Confidence 337888888888887654 23345555555553 457888888888887777544433344443333322 6
Q ss_pred hhhHHHHHHHHHccCC
Q 039792 715 VELGRYAAEMAISIDP 730 (819)
Q Consensus 715 ~~~a~~~~~~~~~~~p 730 (819)
...+...+++..+..|
T Consensus 408 ~~~a~~~~~~~~~~~~ 423 (452)
T 3e4b_A 408 RAEGQRLVQQELAARG 423 (452)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6677777776666543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-11 Score=118.05 Aligned_cols=193 Identities=12% Similarity=-0.051 Sum_probs=144.2
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039792 494 LDVFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALIT 570 (819)
Q Consensus 494 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 570 (819)
++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4556677777888888888888888887754 245677788888889999999999998888752 335667778888
Q ss_pred HHhcc-----------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHH
Q 039792 571 AASNL-----------GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICT 637 (819)
Q Consensus 571 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~ 637 (819)
.+... |++++|...++..++..+. +...+..+..+|...|++++|.+.|++.. ..+...|..+...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 88888 9999999999999888765 67788888999999999999999988654 2667788889999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
|...|++++|+..|++..+ +.|+. ..+..+..++...|++++|++.|++..
T Consensus 161 ~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999988 67865 567888888999999999998887754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-10 Score=112.72 Aligned_cols=159 Identities=13% Similarity=0.070 Sum_probs=89.9
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYA 608 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 608 (819)
.|..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|...++.+.+..+. +...+..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 34445555556666666666666655432 233455555556666666666666666666655433 4455555666666
Q ss_pred hc-CCHHHHHHHHhcCCC----C-ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHH
Q 039792 609 KC-GSLEDAYETFGSTTW----K-DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIED 681 (819)
Q Consensus 609 ~~-g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 681 (819)
.. |++++|.+.|+++.. | +...|..+...|...|++++|+..|+++.+ ..|+ ...+..+..++...|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHcCCHHH
Confidence 66 666666666655432 1 134555566666666666666666666665 3443 3445555556666666666
Q ss_pred HHHHHHHHHh
Q 039792 682 GLDHFQSMAG 691 (819)
Q Consensus 682 a~~~~~~m~~ 691 (819)
|..+++++.+
T Consensus 166 A~~~~~~~~~ 175 (225)
T 2vq2_A 166 ADYYFKKYQS 175 (225)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-11 Score=126.73 Aligned_cols=225 Identities=9% Similarity=-0.015 Sum_probs=189.0
Q ss_pred eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039792 528 VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGS-LKHGQQFHNHLIKLGLDFDSFITSALIDM 606 (819)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 606 (819)
..|+.+...+...|++++|++.|++.+... +-+...|..+..++...|+ +++|...++.+++..+. +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 457778888999999999999999999752 3356778888889999996 99999999999998876 88899999999
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHc-cCCHHH
Q 039792 607 YAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSH-AGLIED 681 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~-~g~~~~ 681 (819)
|.+.|++++|...|+++. ..+...|..+...+...|++++|++.|+++++ +.|+. ..|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999877 56788999999999999999999999999999 78865 689999999998 666577
Q ss_pred H-----HHHHHHHHhcCCccC-chHHHHHHHHhhcccc-hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCC-------
Q 039792 682 G-----LDHFQSMAGFGIEPG-MEHYASVVSLLGRNVW-NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNS------- 747 (819)
Q Consensus 682 a-----~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g------- 747 (819)
| ++.+++.+. +.|+ ...|..+..+|.+.+. +.+.+...++++ +.+|+++..+..|+.+|...|
T Consensus 254 A~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 588888877 3343 3455555666655322 577888888888 999999999999999999975
Q ss_pred -C-chHHHHHHHHH
Q 039792 748 -M-WADAKQVRKKM 759 (819)
Q Consensus 748 -~-~~~a~~~~~~m 759 (819)
+ .++|.++++++
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 2 58999999987
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-10 Score=114.76 Aligned_cols=193 Identities=11% Similarity=-0.087 Sum_probs=167.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039792 496 VFAGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAA 572 (819)
Q Consensus 496 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 572 (819)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 57788889999999999999999998764 356788889999999999999999999998763 34678888899999
Q ss_pred hccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHH
Q 039792 573 SNLGSLKHGQQFHNHLIKLGLDF-DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKAL 648 (819)
Q Consensus 573 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 648 (819)
...|++++|..+++.+.+.+..| +...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998832333 56788889999999999999999999866 456788999999999999999999
Q ss_pred HHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 649 LLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 649 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..++++.+ ..|+. ..+..+...+...|++++|.++++++.+
T Consensus 196 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999987 56654 5677888889999999999999998877
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.7e-11 Score=118.55 Aligned_cols=229 Identities=11% Similarity=-0.029 Sum_probs=178.6
Q ss_pred eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHH
Q 039792 528 VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFD--SFITSALID 605 (819)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~ 605 (819)
..+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+.+..++ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566778899999999999999998753 22444788888899999999999999999998442222 334888999
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHH
Q 039792 606 MYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIED 681 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 681 (819)
.|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ +.|+. ..+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876 45678999999999999999999999999987 57865 456666635555679999
Q ss_pred HHHHHHHHHhcCCccC-chHHHHHHHHhhcccch---hhhHHHHHHHHHccC---CCC-----chhHHHHHHHHHhCCCc
Q 039792 682 GLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWN---VELGRYAAEMAISID---PMD-----SGSYTLLSNTFACNSMW 749 (819)
Q Consensus 682 a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~y~~~g~~ 749 (819)
|.+.|+++.+. .|+ ...+..+...+.... + .+.|...+++++++. |+. ...|..++.+|...|++
T Consensus 161 A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 161 ADSSFVKVLEL--KPNIYIGYLWRARANAAQD-PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHS-TTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHh--CccchHHHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999882 233 233333333333221 3 666888888888886 442 25888999999999999
Q ss_pred hHHHHHHHHHHhC
Q 039792 750 ADAKQVRKKMDLD 762 (819)
Q Consensus 750 ~~a~~~~~~m~~~ 762 (819)
++|.+.+++..+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-10 Score=112.18 Aligned_cols=199 Identities=9% Similarity=-0.021 Sum_probs=169.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHH
Q 039792 561 NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICT 637 (819)
Q Consensus 561 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 637 (819)
+...+..+...+...|++++|...++.+.+..+. +...+..+...|...|++++|.+.|+++. +.+...|..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 4566778888899999999999999999987654 67889999999999999999999999876 4577889999999
Q ss_pred HHhC-CChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchh
Q 039792 638 NAHH-GEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNV 715 (819)
Q Consensus 638 ~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~ 715 (819)
|... |++++|+..++++.+.+..|+ ...+..+..++...|++++|...++++.+.. ..+...+..+...+.+.+ +.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~-~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG-QL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT-CH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC-CH
Confidence 9999 999999999999998444455 3578888899999999999999999998732 112455666666665543 88
Q ss_pred hhHHHHHHHHHccCC-CCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 716 ELGRYAAEMAISIDP-MDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 716 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+.|...++++++..| +++..+..++.+|...|++++|...++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999988753
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.1e-11 Score=117.85 Aligned_cols=198 Identities=11% Similarity=0.015 Sum_probs=152.5
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHH
Q 039792 560 PNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMIC 636 (819)
Q Consensus 560 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 636 (819)
....++..+...+...|+++.|..+++.+.+..+. +...+..+...|.+.|++++|.+.|+++. +.+...|..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34566777788889999999999999999987654 68888999999999999999999999866 457788999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchh
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNV 715 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~ 715 (819)
.|...|++++|++.++++.+ ..|+ ...+..+...+...|++++|..+++++.+.. ..+...+..+...+.+.+ +.
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~ 175 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEG-ML 175 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-CC
T ss_pred HHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcC-CH
Confidence 99999999999999999998 4564 4678888899999999999999999998732 123445666666665443 88
Q ss_pred hhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 716 ELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 716 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+.|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999998764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.9e-10 Score=112.51 Aligned_cols=226 Identities=11% Similarity=-0.026 Sum_probs=166.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCCC-CeeehhhhHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQR-DIVVWNAMLLGYTQ----QLENEEAIKLYLELLLSQQRPNEFTFAALI 569 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 569 (819)
++..+..+...|...|++++|...|++..++ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3445556666777777777777777766553 44566667777777 888888888888887765 667777777
Q ss_pred HHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCC-CCChHhHHHHHHHHHh
Q 039792 570 TAASN----LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK----CGSLEDAYETFGSTT-WKDVACWNSMICTNAH 640 (819)
Q Consensus 570 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~ 640 (819)
..+.. .+++++|...++...+.+ +...+..+..+|.+ .|++++|.+.|++.. ..+..++..+...|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 77777 888888888888888765 66777788888888 888888888887765 3356677778788877
Q ss_pred ----CCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhc--
Q 039792 641 ----HGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH----AGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGR-- 710 (819)
Q Consensus 641 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r-- 710 (819)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+. ...+..+..+|-+
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGE 232 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCC
Confidence 888888888888888743 34567777778888 8888888888888877543 3344444444443
Q ss_pred --ccchhhhHHHHHHHHHccCCCCc
Q 039792 711 --NVWNVELGRYAAEMAISIDPMDS 733 (819)
Q Consensus 711 --~~w~~~~a~~~~~~~~~~~p~~~ 733 (819)
.. +.+.|...+++++++.|+++
T Consensus 233 ~~~~-~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 233 GVTR-NEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp SSSC-CSTTHHHHHHHHHHHTCHHH
T ss_pred Cccc-CHHHHHHHHHHHHHcCCHHH
Confidence 22 77888888888888887643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-10 Score=106.42 Aligned_cols=162 Identities=15% Similarity=0.098 Sum_probs=99.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLS 671 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 671 (819)
+..+|..+...|.+.|++++|.+.|++.. +.+..+|..+...|...|++++|+..+++... ..|+. ..+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 34455555555555555555555555543 33445555555666666666666666666555 34433 34444555
Q ss_pred HHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCch
Q 039792 672 ACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWA 750 (819)
Q Consensus 672 a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 750 (819)
.+...+++++|.+.+.+... ... +...+..+...+.+.+ +.+.|...++++++++|+++.+|..++.+|...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~--~~~~~~~lg~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV--YADAYYKLGLVYDSMG-EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHhC-CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 55566666666666665554 211 1223333333333222 5666666777888889999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 039792 751 DAKQVRKKMDLD 762 (819)
Q Consensus 751 ~a~~~~~~m~~~ 762 (819)
+|.+.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999988764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-11 Score=131.91 Aligned_cols=229 Identities=12% Similarity=0.012 Sum_probs=126.9
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHh----C-CCCchhH
Q 039792 530 WNAMLLGYTQQLENEEAIKLYLELLLS----QQRP-NEFTFAALITAASNLGSLKHGQQFHNHLIKL----G-LDFDSFI 599 (819)
Q Consensus 530 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~ 599 (819)
|..+...|...|++++|+..|++.... +-.| ...++..+...+...|++++|...+..+.+. + ......+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444455555555555555544321 1111 2234445555555566666666655555432 1 0112335
Q ss_pred HHHHHHHHHhcCC-----------------HHHHHHHHhcCCC-----C----ChHhHHHHHHHHHhCCChHHHHHHHHH
Q 039792 600 TSALIDMYAKCGS-----------------LEDAYETFGSTTW-----K----DVACWNSMICTNAHHGEPMKALLLFRE 653 (819)
Q Consensus 600 ~~~li~~~~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 653 (819)
+..+...|...|+ +++|.+.+++... . ...+|..+...|...|++++|++.+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5556666666666 6666665554320 1 123556666666677777777777666
Q ss_pred HHHcCCCC---C----chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccC----chHHHHHHHHhhcccchhhhHHHH
Q 039792 654 MIIEGLEP---N----YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPG----MEHYASVVSLLGRNVWNVELGRYA 721 (819)
Q Consensus 654 m~~~g~~p---~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~----~~~y~~li~~l~r~~w~~~~a~~~ 721 (819)
..+ +.| + ..++..+...+...|++++|...+++... ..-..+ ...+..+...+.+.+ +.+.|...
T Consensus 249 al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~ 325 (411)
T 4a1s_A 249 RLR--IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLH-EFNTAIEY 325 (411)
T ss_dssp HHH--HHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHH--HHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 654 222 1 12456666667777777777777766655 111111 123333333333222 66666666
Q ss_pred HHHHHccCCCC------chhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 722 AEMAISIDPMD------SGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 722 ~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+++++++.++. ...|..++.+|...|++++|.+.+++..+
T Consensus 326 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 326 HNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666664432 44888999999999999999999988765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=8e-11 Score=128.96 Aligned_cols=209 Identities=11% Similarity=0.026 Sum_probs=174.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 039792 542 ENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSL-KHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETF 620 (819)
Q Consensus 542 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 620 (819)
..++++..+++.... .+.+...+..+..++...|++ ++|...++.+++..+. +...+..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356777777766543 234677888888889999999 9999999999988755 6788999999999999999999999
Q ss_pred hcCC--CCChHhHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHcc--------CCHH
Q 039792 621 GSTT--WKDVACWNSMICTNAHH---------GEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHA--------GLIE 680 (819)
Q Consensus 621 ~~~~--~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~ 680 (819)
++.. .|+...|..+...|... |++++|++.|++.++ +.|+. ..|..+..+|... |+++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8866 56778888899999999 999999999999998 67864 6788888899888 9999
Q ss_pred HHHHHHHHHHhcCCcc----CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHH
Q 039792 681 DGLDHFQSMAGFGIEP----GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVR 756 (819)
Q Consensus 681 ~a~~~~~~m~~~g~~p----~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 756 (819)
+|...|++..+. .| +...|..+..+|.+.+ +.+.|...++++++++|+++.++..++.++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEE-SYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999883 23 4556666666665544 8899999999999999999999999999999999999998754
Q ss_pred H
Q 039792 757 K 757 (819)
Q Consensus 757 ~ 757 (819)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-11 Score=124.14 Aligned_cols=233 Identities=11% Similarity=0.032 Sum_probs=144.9
Q ss_pred ehhhhHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC-C
Q 039792 529 VWNAMLLGYTQQLENEEAIKLYLELLLS-------QQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL------GL-D 594 (819)
Q Consensus 529 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~-~ 594 (819)
+|..+...|...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++.+++. +- .
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444555555666666666666655541 12223345666666677777777777777766653 11 2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C----ChHhHHHHHHHHHhCCChHHHHHHHHHHHHc------
Q 039792 595 FDSFITSALIDMYAKCGSLEDAYETFGSTTW-------K----DVACWNSMICTNAHHGEPMKALLLFREMIIE------ 657 (819)
Q Consensus 595 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 657 (819)
.....+..+...|...|++++|.+.|++... + ....|..+...|...|++++|++.|+++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 2345667777777888888888777765441 1 2346777888888889999999988888763
Q ss_pred CCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhc-------CCccCchHHHHHHHHhhcc------cchhhhHHHHHH
Q 039792 658 GLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGF-------GIEPGMEHYASVVSLLGRN------VWNVELGRYAAE 723 (819)
Q Consensus 658 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~y~~li~~l~r~------~w~~~~a~~~~~ 723 (819)
+..|+. .++..+..++...|++++|.++++++.+. ...|...........+... ......+...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 224433 46778888899999999999999888762 2222222222111111111 014445556677
Q ss_pred HHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 724 MAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 724 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
++....|.++..+..++.+|...|++++|.+.+++..+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77778888899999999999999999999999998765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.6e-11 Score=127.21 Aligned_cols=295 Identities=12% Similarity=-0.017 Sum_probs=145.7
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhHHHHHHHHhhccCchHhHHHHHHHHHHh----CCc-cch
Q 039792 426 VVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPG----LLTFVSLLGLSSSVFSLESSKQIHGLIIKY----GVF-LDV 496 (819)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----g~~-~~~ 496 (819)
...+......+...|++++|+..|++..+... .+ ...+..+...+...|+++.|...+....+. +.. ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34556667778888888899888888876421 12 134555566666677777777766665432 111 113
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----eeehhhhHHHHHhcCC-------------HHHHHHHHHHHH
Q 039792 497 FAGSALIDAYSKCFSNKDARLVFDEMNQ-----RD----IVVWNAMLLGYTQQLE-------------NEEAIKLYLELL 554 (819)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~-------------~~~A~~~~~~m~ 554 (819)
.++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~----- 162 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA----- 162 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH-----
Confidence 3444555555555555555555554432 11 1234444444444444 0000000
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCC-----
Q 039792 555 LSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL----GLD-FDSFITSALIDMYAKCGSLEDAYETFGSTT----- 624 (819)
Q Consensus 555 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----- 624 (819)
++.|...+....+. +.. ....++..+...|...|++++|.+.|++..
T Consensus 163 -----------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 163 -----------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 44444444433321 100 012234445555555555555555554433
Q ss_pred CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCC
Q 039792 625 WKD----VACWNSMICTNAHHGEPMKALLLFREMIIEGL-EPN----YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGI 694 (819)
Q Consensus 625 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~ 694 (819)
.++ ..+|..+...|...|++++|+..+++..+..- .++ ..++..+...+...|++++|.+++++..+ ..-
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 111 12455555555566666666666655543100 001 22445555556666666666666665554 111
Q ss_pred ccC----chHHHHHHHHhhcccchhhhHHHHHHHHHccC------CCCchhHHHHHHHHHhCCCch
Q 039792 695 EPG----MEHYASVVSLLGRNVWNVELGRYAAEMAISID------PMDSGSYTLLSNTFACNSMWA 750 (819)
Q Consensus 695 ~p~----~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~ 750 (819)
.++ ...+..+...+.+.+ +.+.|...+++++++. |....++..++.+|...|+..
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALG-NHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 111 112222333322222 5555555555555552 223557778888888888664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=9.1e-10 Score=113.29 Aligned_cols=210 Identities=14% Similarity=0.103 Sum_probs=156.8
Q ss_pred HHHHHHHHhcCC---C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCChHHHHHHHH
Q 039792 513 KDARLVFDEMNQ---R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN-EF-TFAALITAASNLGSLKHGQQFHN 586 (819)
Q Consensus 513 ~~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~ 586 (819)
++|..+|++..+ | +...|..++..+.+.|++++|.++|++..+ +.|+ .. .|..+...+.+.|++++|..+++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 788888887654 3 345788888888888999999999998887 3454 32 78888888888899999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHH-hcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCC
Q 039792 587 HLIKLGLDFDSFITSALIDMYA-KCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEG-LEP 661 (819)
Q Consensus 587 ~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 661 (819)
.+++..+. +...|........ ..|+.++|.++|++.. +.+...|..++..+...|+.++|..+|++.++.. +.|
T Consensus 159 ~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 88876543 4555554444432 3699999999998876 4577889999999999999999999999999853 466
Q ss_pred C--chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHH
Q 039792 662 N--YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTL 738 (819)
Q Consensus 662 ~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~ 738 (819)
+ ...|..++......|+.++|..+++++.+ ..-.++......+.+. .+.++++|+++..++.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~r---------------~~~l~~~P~~~~~ln~ 302 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDR---------------YKFMDLYPCSASELKA 302 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHHTT---------------TCBTTBCSSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchHHHHHHH---------------HHhcccCCCCHHHHHh
Confidence 4 34688888888889999999999999988 5444433322222221 2566789999888877
Q ss_pred HH
Q 039792 739 LS 740 (819)
Q Consensus 739 l~ 740 (819)
|+
T Consensus 303 lg 304 (308)
T 2ond_A 303 LG 304 (308)
T ss_dssp TT
T ss_pred cC
Confidence 65
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-08 Score=110.38 Aligned_cols=214 Identities=10% Similarity=-0.012 Sum_probs=121.1
Q ss_pred chhhHHHHHHHHHhcCChHHHH-HHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC
Q 039792 495 DVFAGSALIDAYSKCFSNKDAR-LVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQ---------QRPN 561 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~ 561 (819)
...+|-..+..+.+.|+.++|. .+|++... | +...|-..+...-+.|++++|.++|+++.... -.|+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 3444444444444555555553 55554432 2 22234444455555566666666665555321 0131
Q ss_pred ------------HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhcCC---C
Q 039792 562 ------------EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG-SLEDAYETFGSTT---W 625 (819)
Q Consensus 562 ------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~ 625 (819)
...|...+....+.|.++.|+.++..+++........+|...+.+-.++| +.+.|.++|+... +
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 23466666666667777777777777776511122334433333334444 4777777777665 4
Q ss_pred CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHH
Q 039792 626 KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN--YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYAS 703 (819)
Q Consensus 626 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~ 703 (819)
.+...|...+.-....|+.+.|..+|++.+.....|. ...|...+.--...|+.+.+..+.+++.+. .|+......
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~ 579 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEE 579 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHH
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHH
Confidence 4566677777766777778888888887776322111 235666666666678888888888777762 244445555
Q ss_pred HHHHhhc
Q 039792 704 VVSLLGR 710 (819)
Q Consensus 704 li~~l~r 710 (819)
+++-|+-
T Consensus 580 f~~ry~~ 586 (679)
T 4e6h_A 580 FTNKYKV 586 (679)
T ss_dssp HHHHTCB
T ss_pred HHHHhcC
Confidence 5666653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.3e-11 Score=122.99 Aligned_cols=132 Identities=10% Similarity=-0.038 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccC----ch
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGL-EPN----YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPG----ME 699 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~----~~ 699 (819)
++..+...|...|++++|++.+++..+..- .++ ..++..+...+...|++++|..++++..+ ..-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 445555555555666666655555543100 011 11455555555566666666666655544 111111 12
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHccCCCC------chhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 700 HYASVVSLLGRNVWNVELGRYAAEMAISIDPMD------SGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 700 ~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.+..+...+.+.+ +.+.|...+++++++.|.. ...+..++.+|...|++++|.+.+++..+.
T Consensus 265 ~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 2222333332222 5555555555555554332 447889999999999999999999988764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-10 Score=125.76 Aligned_cols=260 Identities=11% Similarity=0.022 Sum_probs=177.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC--CC-----eeehhhhHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHH
Q 039792 501 ALIDAYSKCFSNKDARLVFDEMNQ--RD-----IVVWNAMLLGYTQQLENEEAIKLYLELLLS----QQRPN-EFTFAAL 568 (819)
Q Consensus 501 ~li~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~l 568 (819)
.....+.+.|++++|...|++..+ |+ ...|..+...|...|++++|...|++.... +-.|. ..++..+
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 344445555555555555554432 21 124555566666667777777766665421 11221 3456667
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCC--------------------HHHHHHHHhcC
Q 039792 569 ITAASNLGSLKHGQQFHNHLIKLGLD-----FDSFITSALIDMYAKCGS--------------------LEDAYETFGST 623 (819)
Q Consensus 569 l~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~ 623 (819)
...+...|+++.|...+..+.+.... ....++..+...|...|+ +++|.+.+++.
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 77778888888888888776653111 114477788888999999 88888888764
Q ss_pred C-----CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----chhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 624 T-----WKD----VACWNSMICTNAHHGEPMKALLLFREMIIEGL-EPN----YITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 624 ~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
. .++ ..+|..+...|...|++++|+..+++..+..- .++ ..++..+...+...|++++|..++++.
T Consensus 174 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3 122 34688889999999999999999999876210 122 136888888999999999999999998
Q ss_pred Hh-cCCccC----chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCC------chhHHHHHHHHHhCCCchHHHHHHHH
Q 039792 690 AG-FGIEPG----MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMD------SGSYTLLSNTFACNSMWADAKQVRKK 758 (819)
Q Consensus 690 ~~-~g~~p~----~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~ 758 (819)
.. ..-.++ ...+..+...+.+.+ +.+.|...+++++++.+.. ...+..++.+|...|++++|.+.+++
T Consensus 254 l~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCcCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 76 221222 234445555554433 8899999999999886654 56889999999999999999999988
Q ss_pred HHh
Q 039792 759 MDL 761 (819)
Q Consensus 759 m~~ 761 (819)
..+
T Consensus 333 al~ 335 (406)
T 3sf4_A 333 HLE 335 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-10 Score=123.70 Aligned_cols=195 Identities=16% Similarity=0.039 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC-----C----CeeehhhhHHHHHhcCC-----------------HHHHHHHH
Q 039792 497 FAGSALIDAYSKCFSNKDARLVFDEMNQ-----R----DIVVWNAMLLGYTQQLE-----------------NEEAIKLY 550 (819)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 550 (819)
..+..+...|...|++++|...|++..+ . ...++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3444555555556666665555554332 0 12244555555666666 66666666
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHHhcCCHHHHHHHH
Q 039792 551 LELLLS----QQRP-NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLD-FD----SFITSALIDMYAKCGSLEDAYETF 620 (819)
Q Consensus 551 ~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~ 620 (819)
++..+. +..| ...++..+...+...|++++|...++...+.... .+ ...+..+...|...|++++|.+.|
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 554321 1111 1234555666666777777777777666543211 01 225566666777777777777766
Q ss_pred hcCCC-----CC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-chhHHHHHHHHHccCCHHHHHHHH
Q 039792 621 GSTTW-----KD----VACWNSMICTNAHHGEPMKALLLFREMIIE----GLEPN-YITFVGVLSACSHAGLIEDGLDHF 686 (819)
Q Consensus 621 ~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 686 (819)
++... .+ ..+|..+...|...|++++|.+.+++.++. +..+. ..++..+..+|...|++++|.+++
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 65441 11 345666667777777777777777766542 10111 135566666677777777777777
Q ss_pred HHHHh
Q 039792 687 QSMAG 691 (819)
Q Consensus 687 ~~m~~ 691 (819)
++..+
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76655
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-09 Score=103.64 Aligned_cols=208 Identities=12% Similarity=0.016 Sum_probs=157.0
Q ss_pred CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 039792 526 DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALID 605 (819)
Q Consensus 526 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 605 (819)
|+..|......+...|++++|++.|++..+...+++...+..+..++...|++++|...++..++..+. +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 344556667778888888888888888887654477777777888888899999999999998887655 6778888899
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCh-------HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--c-hhHHHHHHH
Q 039792 606 MYAKCGSLEDAYETFGSTT---WKDV-------ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN--Y-ITFVGVLSA 672 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~---~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~-~t~~~ll~a 672 (819)
.|.+.|++++|.+.|++.. +.+. ..|..+...+...|++++|++.|++.++ +.|+ . ..+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHHH
Confidence 9999999999999998766 3344 4577888889999999999999999987 7787 4 467777777
Q ss_pred HHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 039792 673 CSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 745 (819)
+... +..+++++...+ ..+...|......... +.+.|...++++++++|+++.+...|+.+...
T Consensus 163 ~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLA-SSNKEKYASEKAKADA---AFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHH-----HHHHHHHHGGGT-TTCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHH-----HHHHHHHHHhcc-cCCHHHHHHHHHHHHH---HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 7544 445556665532 1223344444332222 67899999999999999999999888877543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.7e-10 Score=126.02 Aligned_cols=160 Identities=14% Similarity=0.227 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHH
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSA 672 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 672 (819)
...++.|...|.+.|++++|.+.|++.. +.+..+|+.|...|.+.|++++|++.|++.++ +.|+. ..|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4455566666666666666666666544 33455666666666666666666666666666 55654 456666666
Q ss_pred HHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchH
Q 039792 673 CSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWAD 751 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 751 (819)
+...|++++|++.|++.++. .|+ ...|..+..+|.+.+ +.+.|...++++++++|+++.+|..|+.+|...|+|++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g-~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSG-NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 66677777777766666652 232 334444544444433 66777777888899999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 039792 752 AKQVRKKMDL 761 (819)
Q Consensus 752 a~~~~~~m~~ 761 (819)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-09 Score=100.60 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=109.3
Q ss_pred eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 039792 528 VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMY 607 (819)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 607 (819)
..|..+...|.+.|++++|++.|++..+.. +-+..++..+..++...|+++.|...+..+....+. +...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHH
Confidence 345556666666677777777777666542 224556666666677777777777777777666544 555666666777
Q ss_pred HhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHH
Q 039792 608 AKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGL 683 (819)
Q Consensus 608 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 683 (819)
...++++.|.+.+++.. +.+...|..+...|...|++++|++.|++.++ +.|+. .+|..+..++.+.|++++|.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 77777777777776554 44566777777777777788888888877777 56654 46777777777778777777
Q ss_pred HHHHHHHh
Q 039792 684 DHFQSMAG 691 (819)
Q Consensus 684 ~~~~~m~~ 691 (819)
+.|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777665
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.1e-10 Score=116.51 Aligned_cols=196 Identities=16% Similarity=0.068 Sum_probs=116.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----eeehhhhHHHHHhcCC--------------------HHHH
Q 039792 496 VFAGSALIDAYSKCFSNKDARLVFDEMNQ-----RD----IVVWNAMLLGYTQQLE--------------------NEEA 546 (819)
Q Consensus 496 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 546 (819)
..++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34455566666666666666666655432 11 2255556666666666 6677
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCCHHHH
Q 039792 547 IKLYLELLLS----QQRP-NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLD-----FDSFITSALIDMYAKCGSLEDA 616 (819)
Q Consensus 547 ~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A 616 (819)
.+.+++.... +..| ...++..+...+...|+++.|...++...+.... .....+..+...|...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6666654421 1111 1234556666677777777777777766542111 0123566677777777777777
Q ss_pred HHHHhcCC-----CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-chhHHHHHHHHHccCCHHHH
Q 039792 617 YETFGSTT-----WKD----VACWNSMICTNAHHGEPMKALLLFREMIIE----GLEPN-YITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 617 ~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a 682 (819)
.+.+++.. .++ ..++..+...|...|++++|...+++..+. +-.+. ..++..+...+...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 77776544 111 345666777777777777777777776652 11111 23566667777777777777
Q ss_pred HHHHHHHHh
Q 039792 683 LDHFQSMAG 691 (819)
Q Consensus 683 ~~~~~~m~~ 691 (819)
..++++..+
T Consensus 323 ~~~~~~a~~ 331 (338)
T 3ro2_A 323 MHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=5.6e-09 Score=107.36 Aligned_cols=216 Identities=9% Similarity=0.047 Sum_probs=115.4
Q ss_pred HHHHHHHHhcCC---CCeeehhhhHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 039792 513 KDARLVFDEMNQ---RDIVVWNAMLLGYT-------QQLEN-------EEAIKLYLELLLSQQRP-NEFTFAALITAASN 574 (819)
Q Consensus 513 ~~A~~~~~~~~~---~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 574 (819)
++|..+|++... .++..|..++..+. +.|+. ++|..+|++.... +.| +...|..+...+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 345555555443 23445555555443 23554 6666666666652 133 33456666666666
Q ss_pred cCChHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHH-hCCChHHHHH
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSF-ITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNA-HHGEPMKALL 649 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~-~~g~~~~A~~ 649 (819)
.|++++|..+++.+++..+. +.. +|..++..+.+.|++++|..+|++.. +.+...|........ ..|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666664322 232 56666666666666666666666544 222333332222211 2466666666
Q ss_pred HHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhc-CCccC--chHHHHHHHHhhcccchhhhHHHHHHHH
Q 039792 650 LFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGF-GIEPG--MEHYASVVSLLGRNVWNVELGRYAAEMA 725 (819)
Q Consensus 650 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~--~~~y~~li~~l~r~~w~~~~a~~~~~~~ 725 (819)
+|++.++ ..|+. ..|..++..+.+.|++++|..+|++.... .+.|+ ...|..++..+.+.+ +.+.+..+.+++
T Consensus 191 ~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g-~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG-DLASILKVEKRR 267 (308)
T ss_dssp HHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 6666665 34543 45556666666666666666666666653 23442 233444443333222 555566666666
Q ss_pred HccCCCCc
Q 039792 726 ISIDPMDS 733 (819)
Q Consensus 726 ~~~~p~~~ 733 (819)
++..|+++
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 66666543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.3e-10 Score=118.60 Aligned_cols=227 Identities=10% Similarity=-0.016 Sum_probs=156.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC------CchhHHH
Q 039792 533 MLLGYTQQLENEEAIKLYLELLLSQ-QRPN----EFTFAALITAASNLGSLKHGQQFHNHLIKLGLD------FDSFITS 601 (819)
Q Consensus 533 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~ 601 (819)
....+...|++++|+..|++....- -.++ ..++..+...+...|+++.|...+....+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3445667788888888887776421 0122 345677777778888888888888877653111 1234677
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC-----CCCh----HhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-chhHH
Q 039792 602 ALIDMYAKCGSLEDAYETFGSTT-----WKDV----ACWNSMICTNAHHGEPMKALLLFREMIIE----GLEPN-YITFV 667 (819)
Q Consensus 602 ~li~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 667 (819)
.+...|...|++++|.+.|++.. .++. .+|..+...|...|++++|++.|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 78888888899998888887655 1222 36788888999999999999999988762 22244 35688
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh-cCCccCc---hHHHHHHHHhhcccch---hhhHHHHHHHHHccCCCCchhHHHHH
Q 039792 668 GVLSACSHAGLIEDGLDHFQSMAG-FGIEPGM---EHYASVVSLLGRNVWN---VELGRYAAEMAISIDPMDSGSYTLLS 740 (819)
Q Consensus 668 ~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~---~~y~~li~~l~r~~w~---~~~a~~~~~~~~~~~p~~~~~~~~l~ 740 (819)
.+...+...|++++|..++++..+ ..-.++. ..+..+..++...+ + .+.|...+++. ...|.....+..|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~al~~~~~~-~~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP-DEEAIQGFFDFLESK-MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC-CHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 888899999999999999998876 2222222 22333444443322 3 55555555555 33444566888999
Q ss_pred HHHHhCCCchHHHHHHHHHHh
Q 039792 741 NTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 741 ~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.+|...|++++|.+.+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998865
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=6.1e-09 Score=97.61 Aligned_cols=162 Identities=10% Similarity=-0.041 Sum_probs=134.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHH
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSA 672 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 672 (819)
...+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|.+.++++.+ ..|+ ...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHH
Confidence 4556778888999999999999999877 34677888999999999999999999999988 4565 4678888889
Q ss_pred HHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHH
Q 039792 673 CSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADA 752 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 752 (819)
+...|++++|.++++++.... ..+...+..+...+.+.+ +.+.|...++++++..|+++..+..++.+|...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLG-RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998732 123445555555555443 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 039792 753 KQVRKKMDLD 762 (819)
Q Consensus 753 ~~~~~~m~~~ 762 (819)
.+.+++..+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999988764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-07 Score=106.43 Aligned_cols=456 Identities=9% Similarity=-0.033 Sum_probs=251.7
Q ss_pred CchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCC---hHHHHH
Q 039792 239 RSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGR---VKMARR 315 (819)
Q Consensus 239 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~ 315 (819)
...+.+..|++-...+ +-|..+|..++..+.+.+.++.++.+++.++.. ++.....|...+..-.+.|. ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3445555555555443 347778888888888778888888888888776 45566777777777777777 888888
Q ss_pred HHhcccC-----CCcccHHHHHHHHHcCCCh----hH----HHHHHHHHHH-CCC-CCCc-chHHHHHHHhcC-------
Q 039792 316 LFDEIEV-----KNIISWTTLIGGYMQNSFD----RE----AMKLFTEMTR-SGW-KPDD-FACSSVLTSCGS------- 372 (819)
Q Consensus 316 ~~~~~~~-----~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~------- 372 (819)
+|++... +++..|...+.-..+.++. ++ ..++|+..+. -|. .|+. ..|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 8877652 5555666666544443332 22 3355555443 244 4433 222222222111
Q ss_pred --CcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 039792 373 --VEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFH 450 (819)
Q Consensus 373 --~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 450 (819)
.+..+.++.+|..++......-..+|......-.. . +..+-..++.- ....++.|...+.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~-------------~---~~~~a~~~~~e--~~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQD-------------V---NQLTARRHIGE--LSAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHH-------------H---CTTTHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh-------------c---CcchHHHHHHH--hhHHHHHHHHHHH
Confidence 12233444444444421111001111111100000 0 00000011110 0112333444444
Q ss_pred HHHh--CCCC---CCh-hHHHHHHHHhhccC-chHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcC-------ChHHHH
Q 039792 451 EMRV--GFVP---PGL-LTFVSLLGLSSSVF-SLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCF-------SNKDAR 516 (819)
Q Consensus 451 ~m~~--~g~~---p~~-~t~~~ll~~~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g-------~~~~A~ 516 (819)
++.. .++. |.. .+.. ....-..+ .......++...+. .--..+ ..+.+.
T Consensus 267 e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql~lW~~yi~---------------fEk~~~~~l~~~~~~~Rv~ 329 (679)
T 4e6h_A 267 DWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQLLIWLEWIR---------------WESDNKLELSDDLHKARMT 329 (679)
T ss_dssp HHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHHHHHHHHHH---------------HHHTCTTCCCHHHHHHHHH
T ss_pred HHHHHHHhHhhccccccccch--hccCCCCchhHHHHHHHHHHHHH---------------HHHhCCccccchhhHHHHH
Confidence 4321 1111 000 0000 00000000 01111222222221 111110 012334
Q ss_pred HHHHhcCC---CCeeehhhhHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 039792 517 LVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAI-KLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLG 592 (819)
Q Consensus 517 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 592 (819)
.+|++... .+...|-..+.-+.+.|+.++|. ++|++.... ++.+...+...+......|+++.|..+++.+++..
T Consensus 330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44554432 24567777777778888888997 999998864 44555566777888888999999999999888642
Q ss_pred C---------CC------------chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----ChHhHHHHHHHHHhC-CChHH
Q 039792 593 L---------DF------------DSFITSALIDMYAKCGSLEDAYETFGSTTWK----DVACWNSMICTNAHH-GEPMK 646 (819)
Q Consensus 593 ~---------~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~-g~~~~ 646 (819)
. .| ...+|...++...+.|.++.|+.+|++.... ....|-..+..-.+. ++.+.
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~ 488 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKT 488 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHH
Confidence 0 12 2347888889888999999999999887522 233343332222333 55899
Q ss_pred HHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc--CchHHHHHHHHhhcccchhhhHHHHHH
Q 039792 647 ALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP--GMEHYASVVSLLGRNVWNVELGRYAAE 723 (819)
Q Consensus 647 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p--~~~~y~~li~~l~r~~w~~~~a~~~~~ 723 (819)
|.++|+..++. .|+. ..+...+.-....|+.+.|..+|+........+ ....|...++.-.+.+ +.+.+..+.+
T Consensus 489 Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G-~~~~~~~v~~ 565 (679)
T 4e6h_A 489 ACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG-SLNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC-CSHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 99999999984 5654 455677777778899999999999988743221 2345666665544433 7888999999
Q ss_pred HHHccCCCCchh
Q 039792 724 MAISIDPMDSGS 735 (819)
Q Consensus 724 ~~~~~~p~~~~~ 735 (819)
++.+..|+++..
T Consensus 566 R~~~~~P~~~~~ 577 (679)
T 4e6h_A 566 RFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHSTTCCHH
T ss_pred HHHHhCCCCcHH
Confidence 999999987543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-09 Score=119.72 Aligned_cols=190 Identities=11% Similarity=0.025 Sum_probs=154.8
Q ss_pred chhhHHHHHHHHHhcCCh-HHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039792 495 DVFAGSALIDAYSKCFSN-KDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALIT 570 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 570 (819)
+...+..+...|...|++ ++|.+.|++..+ | +...|..+...|...|++++|++.|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 455556666666677777 777777766543 2 4567888888889999999999999998874 577788888888
Q ss_pred HHhcc---------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--------CCHHHHHHHHhcCC--C----CC
Q 039792 571 AASNL---------GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC--------GSLEDAYETFGSTT--W----KD 627 (819)
Q Consensus 571 ~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~--~----~~ 627 (819)
.+... |++++|...++.+++..+. +...+..+..+|... |++++|.+.|++.. . .+
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 88888 9999999999999988765 778888999999988 99999999998876 3 47
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 628 VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 628 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
...|..+...|...|++++|++.|++..+ +.|+. ..+..+..++...|++++|.+.+.++
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999999999999998 67865 46888888899999999888765443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.3e-09 Score=109.89 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=29.1
Q ss_pred hhhhhcCCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHH
Q 039792 402 VDMYAKCDSLTEARKVFDVMAD-----RN----VVSYNAMIEGYSKEEKLSEALDLFHEM 452 (819)
Q Consensus 402 i~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (819)
...+...|++++|...|++..+ +| ..+|..+...|...|++++|+..+.+.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445556666666666665533 11 234555666666666666666666554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=110.64 Aligned_cols=201 Identities=10% Similarity=0.013 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C
Q 039792 561 NEFTFAALITAASNLGSLKHGQQFHNHLIKL------GLD-FDSFITSALIDMYAKCGSLEDAYETFGSTTW-------K 626 (819)
Q Consensus 561 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 626 (819)
...++..+...+...|++++|...+..+.+. +-. ....++..+...|...|++++|.+.|++... +
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3455666777777777777777777776653 211 2345677777788888888888877766541 1
Q ss_pred ----ChHhHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhc---
Q 039792 627 ----DVACWNSMICTNAHHGEPMKALLLFREMIIE------GLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGF--- 692 (819)
Q Consensus 627 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--- 692 (819)
...+|..+...|...|++++|+..|+++.+. +-.|+ ..++..+..++...|++++|..+++++.+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2346778888888889999999999888773 11343 346788888999999999999999988762
Q ss_pred ----CCccCchHH-HHHHHHhhcccc-----hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 693 ----GIEPGMEHY-ASVVSLLGRNVW-----NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 693 ----g~~p~~~~y-~~li~~l~r~~w-----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
...|....+ ..+........+ ....+....+......|..+..+..|+.+|...|++++|.+.+++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122332222 222221111100 222333333333334466677899999999999999999999998765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-09 Score=111.42 Aligned_cols=159 Identities=13% Similarity=0.070 Sum_probs=79.2
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CCCC-c
Q 039792 531 NAMLLGYTQQLENEEAIKLYLELLLS------QQRP-NEFTFAALITAASNLGSLKHGQQFHNHLIKL------GLDF-D 596 (819)
Q Consensus 531 ~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~ 596 (819)
..+...|...|++++|...|++..+. +..| ....+..+...+...|++++|..+++.+.+. +..| .
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 194 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV 194 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 33344444444444444444444332 1112 2334555566666666666666666666553 1111 2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC------------CC------hHhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTTW------------KD------VACWNSMICTNAHHGEPMKALLLFREMIIEG 658 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 658 (819)
..++..+...|.+.|++++|.+.|+++.. .. ...+..+...+...+.+.+|...+++...
T Consensus 195 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 272 (311)
T 3nf1_A 195 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV-- 272 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC--
Confidence 34556666677777777777766655431 01 11222333344445566666666666654
Q ss_pred CCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 659 LEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 659 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..|+. .++..+..+|...|++++|.++|++..+
T Consensus 273 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34443 5677778888888888888888887765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-08 Score=94.79 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=92.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 039792 534 LLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSL 613 (819)
Q Consensus 534 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 613 (819)
...+...|++++|...|+++... .+.+...+..+...+...|++++|...++.+.+..+. +...+..+...|...|++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCH
Confidence 33444444444444444444332 1223444555555555555555555555555554332 445555666666666666
Q ss_pred HHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 614 EDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 614 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
++|.+.|+++. +.+...|..+...|...|++++|.+.++++.+ ..|+ ...+..+...+...|++++|..+++++
T Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG--LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666544 34556667777777777777777777777776 3454 356777777777778888887777777
Q ss_pred Hh
Q 039792 690 AG 691 (819)
Q Consensus 690 ~~ 691 (819)
.+
T Consensus 171 ~~ 172 (186)
T 3as5_A 171 NE 172 (186)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-08 Score=99.64 Aligned_cols=191 Identities=11% Similarity=0.047 Sum_probs=147.8
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHH
Q 039792 560 PNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMIC 636 (819)
Q Consensus 560 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 636 (819)
.|+..+......+...|++++|...++.+++..+.++...+..+...|.+.|++++|.+.|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45677888888889999999999999999998765677777779999999999999999998766 345668888999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCch--------hHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC---chHHHHHH
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEPNYI--------TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG---MEHYASVV 705 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~---~~~y~~li 705 (819)
.|...|++++|++.|++..+ +.|+.. .|..+...+...|++++|.+.|++..+. .|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998 667643 4677777888899999999999988763 343 22333333
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
..+ ...+....+++..+.+.+...|.. ......|.+++|...+++..+.
T Consensus 161 ~~~------~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLF------YNNGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH------HHHHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH------HHHHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 333 345666778888888777655543 3455667889999999988763
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-08 Score=114.93 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=129.3
Q ss_pred eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039792 528 VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRP-NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM 606 (819)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 606 (819)
.+|+.|...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|...++++++..+. +...+..+..+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 45666777777888888888888877764 34 4667778888888888888888888888887655 67788888888
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHH
Q 039792 607 YAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 607 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 682 (819)
|.+.|++++|.+.|++.. +.+...|+.+...|...|++++|++.|++.++ +.|+. ..+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHHHH
Confidence 888999999988888765 44677889999999999999999999999988 78875 5788888899999999999
Q ss_pred HHHHHHHHh
Q 039792 683 LDHFQSMAG 691 (819)
Q Consensus 683 ~~~~~~m~~ 691 (819)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-07 Score=98.36 Aligned_cols=193 Identities=13% Similarity=-0.037 Sum_probs=128.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC-------C----CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHH
Q 039792 499 GSALIDAYSKCFSNKDARLVFDEMNQ-------R----DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQR--P--NEF 563 (819)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 563 (819)
+..+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 44556666777777777777665432 1 1124455666777888888888888877653211 1 234
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHhcCCHHHHHHHHhcCCCCC-------hHh
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIKLGLDFDS-FITS-----ALIDMYAKCGSLEDAYETFGSTTWKD-------VAC 630 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~ 630 (819)
++..+...+...|++++|...++...+....++. ..+. ..+..+...|++++|...+++...++ ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5667777788888999998888887754222111 1111 23455778899999999998876332 124
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIE----GLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 567778888899999999999887652 211122 2556666788889999999999888765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-07 Score=100.87 Aligned_cols=226 Identities=10% Similarity=0.012 Sum_probs=151.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----C-CchhHHHH
Q 039792 534 LLGYTQQLENEEAIKLYLELLLSQQ-RPN----EFTFAALITAASNLGSLKHGQQFHNHLIKLGL-----D-FDSFITSA 602 (819)
Q Consensus 534 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~-~~~~~~~~ 602 (819)
...+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+....+... . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445677888888888887764311 122 34566677777888888888888877765311 1 12446677
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC-----CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCC-chhHHHH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT-----WKD----VACWNSMICTNAHHGEPMKALLLFREMIIE---GLEPN-YITFVGV 669 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~-~~t~~~l 669 (819)
+...|...|++++|.+.|++.. .++ ..+++.+...|...|++++|++.|++..+. .-.|+ ..++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 8888888888888888887654 122 236777888899999999999999888761 01233 4567888
Q ss_pred HHHHHccCCHHHHHHHHHHHHh-cCCccCc---hHHHHHHHHhhcccch---hhhHHHHHHHHHccCCCCchhHHHHHHH
Q 039792 670 LSACSHAGLIEDGLDHFQSMAG-FGIEPGM---EHYASVVSLLGRNVWN---VELGRYAAEMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 670 l~a~~~~g~~~~a~~~~~~m~~-~g~~p~~---~~y~~li~~l~r~~w~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 742 (819)
...+.+.|++++|..++++..+ ..-.++. ..+..+..++.... + ...|...+++. ...|.....+..++.+
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~-~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV-DERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 8899999999999999999888 3332222 22333333332221 3 44454444442 2234445678899999
Q ss_pred HHhCCCchHHHHHHHHHHh
Q 039792 743 FACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 743 y~~~g~~~~a~~~~~~m~~ 761 (819)
|...|++++|.+.+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=108.82 Aligned_cols=190 Identities=9% Similarity=0.010 Sum_probs=102.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC-----CC-----eeehhhhHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ-----RD-----IVVWNAMLLGYTQQLENEEAIKLYLELLLS----QQRP-NE 562 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 562 (819)
++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|++.|++..+. +..+ ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344455555555555555555544321 11 224455556666666666666666655431 1111 12
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHH-----hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCC-hH
Q 039792 563 FTFAALITAASNLGSLKHGQQFHNHLIK-----LGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-------WKD-VA 629 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~-~~ 629 (819)
.++..+..++...|+++.|...++...+ ..+ ....++..+...|.+.|++++|.+.+++.. .+. ..
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3455566666666777777776666655 222 235556666667777777777776665433 111 22
Q ss_pred hHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGE---PMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 630 ~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.++.+...|...|+ .++|+..+++ .+..|+. ..+..+...|...|++++|..+|++..+
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444455555566 5555555554 2223332 3455566667777777777777766653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-07 Score=99.22 Aligned_cols=225 Identities=13% Similarity=-0.012 Sum_probs=123.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC-----CCe----eehhhhHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC-HHH
Q 039792 501 ALIDAYSKCFSNKDARLVFDEMNQ-----RDI----VVWNAMLLGYTQQLENEEAIKLYLELLLS----QQR--PN-EFT 564 (819)
Q Consensus 501 ~li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t 564 (819)
.+...|...|++++|...+++... .+. .+++.+...+...|++++|...+++.... +.. |. ...
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 344445555555555555554332 111 12344566677778888888777776532 221 22 234
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhcCCHHHHHHHHhcCC----CC-ChHhHHH--
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDF----DSFITSALIDMYAKCGSLEDAYETFGSTT----WK-DVACWNS-- 633 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~-- 633 (819)
+..+...+...|++++|...++...+..... ....+..+...+...|++++|...+++.. .+ +...|..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 4555666677777777777777776543321 12345556666777777777777666532 11 1122221
Q ss_pred ---HHHHHHhCCChHHHHHHHHHHHHcCCCCCc---hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHH
Q 039792 634 ---MICTNAHHGEPMKALLLFREMIIEGLEPNY---ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSL 707 (819)
Q Consensus 634 ---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 707 (819)
.+..+...|++++|...+++.......++. ..+..+...+...|++++|...++....
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~---------------- 281 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE---------------- 281 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------
Confidence 223355667777777776666542111111 1344555566666777777766666543
Q ss_pred hhcccchhhhHHHHHHHHHccCCC-----C-chhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 708 LGRNVWNVELGRYAAEMAISIDPM-----D-SGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
..+. + ...+..++.+|...|++++|...+++..+
T Consensus 282 --------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 282 --------------------NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp --------------------HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --------------------HHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1110 1 12556667777777777777777776654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=8.2e-08 Score=97.66 Aligned_cols=209 Identities=9% Similarity=-0.035 Sum_probs=108.5
Q ss_pred ChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHH
Q 039792 511 SNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLS----QQRPN-EFTFAALITAASNLGSLKHGQQFH 585 (819)
Q Consensus 511 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~ 585 (819)
++++|...|+.. ...|...|++++|++.|++.... |-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366676666553 55666677777777776665432 11111 234555555555556666665555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCC--
Q 039792 586 NHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHH-GEPMKALLLFREMIIEGLEPN-- 662 (819)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-- 662 (819)
+..++.. ...|+...+ ..+|+.+...|... |++++|+..|++.++ +.|+
T Consensus 101 ~~Al~l~---------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~ 152 (292)
T 1qqe_A 101 ENAIQIF---------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQ 152 (292)
T ss_dssp HHHHHHH---------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTT
T ss_pred HHHHHHH---------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCC
Confidence 5554321 111111111 22455566666664 677777766666665 3231
Q ss_pred -----chhHHHHHHHHHccCCHHHHHHHHHHHHhcCC-ccCch-----HHHHHHHHhhcccchhhhHHHHHHHHHccCCC
Q 039792 663 -----YITFVGVLSACSHAGLIEDGLDHFQSMAGFGI-EPGME-----HYASVVSLLGRNVWNVELGRYAAEMAISIDPM 731 (819)
Q Consensus 663 -----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~-~p~~~-----~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~ 731 (819)
..++..+...+...|++++|+..|++..+... .+... .|..+...+-..+ +.+.|...++++++++|+
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT-DAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHGGGCC---
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC
Confidence 13456666667777777777777777666221 12111 2222322222222 667777777777777776
Q ss_pred Cchh-----HHHHHHHHH--hCCCchHHHHHHHHH
Q 039792 732 DSGS-----YTLLSNTFA--CNSMWADAKQVRKKM 759 (819)
Q Consensus 732 ~~~~-----~~~l~~~y~--~~g~~~~a~~~~~~m 759 (819)
.... +..++..|. ..+++++|.+.++++
T Consensus 232 ~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 232 FADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp ------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 5443 334555554 356788888877543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-08 Score=91.72 Aligned_cols=141 Identities=13% Similarity=0.046 Sum_probs=107.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC---ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCC
Q 039792 603 LIDMYAKCGSLEDAYETFGSTTWK---DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGL 678 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 678 (819)
|..++...|++++|.+.++..... +...|-.+...|.+.|++++|++.|++.++ +.|+. .+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCc
Confidence 455667778889998888877643 344667788889999999999999999988 77865 578888889999999
Q ss_pred HHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchhh-hHHHHHHHHHccCCCCchhHHHHHHHHHhCCC
Q 039792 679 IEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVE-LGRYAAEMAISIDPMDSGSYTLLSNTFACNSM 748 (819)
Q Consensus 679 ~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~-~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 748 (819)
+++|...|++..+. .|+ ...|..+..+|.+.+ +.+ .++...+++++++|+++.+|...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~-~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVEL--NPTQKDLVLKIAELLCKND-VTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC-SSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999998872 243 345555665555432 444 44556799999999999999999999998886
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-07 Score=93.02 Aligned_cols=185 Identities=8% Similarity=-0.024 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-C---hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHH
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT--WK-D---VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFV 667 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~ 667 (819)
..+-.+...+.+.|++++|.+.|+++. .| + ...|..+..+|...|++++|+..|++.++ ..|+. ..+.
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~ 93 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHHHHH
Confidence 333344444555555555555555443 12 2 33445555555555555555555555555 33321 2334
Q ss_pred HHHHHHHc--------cCCHHHHHHHHHHHHh-cCCccCchH---------------HHHHHHHhhcccchhhhHHHHHH
Q 039792 668 GVLSACSH--------AGLIEDGLDHFQSMAG-FGIEPGMEH---------------YASVVSLLGRNVWNVELGRYAAE 723 (819)
Q Consensus 668 ~ll~a~~~--------~g~~~~a~~~~~~m~~-~g~~p~~~~---------------y~~li~~l~r~~w~~~~a~~~~~ 723 (819)
.+..++.. .|++++|...|++..+ ..-.+.... +-.+...|.+.+ +.+.|...++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~ 172 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE-LYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHH
Confidence 44444544 5555555555555554 222222110 012222222222 7788888889
Q ss_pred HHHccCCCC---chhHHHHHHHHHhC----------CCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCC
Q 039792 724 MAISIDPMD---SGSYTLLSNTFACN----------SMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHH 790 (819)
Q Consensus 724 ~~~~~~p~~---~~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~~~~~ 790 (819)
++++..|++ +..+..++.+|... |++++|...++++.+. .| ++|
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~----~p-------------------~~~ 229 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI----FP-------------------DSP 229 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH----CT-------------------TCT
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH----CC-------------------CCh
Confidence 999998884 45889999999876 9999999999988652 23 377
Q ss_pred ChHHHHHHHHHHHHHHHh
Q 039792 791 AADLTYSILDNLILHIKG 808 (819)
Q Consensus 791 ~~~~i~~~l~~l~~~~~~ 808 (819)
...+....+..+..++.+
T Consensus 230 ~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777888888888777765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-07 Score=94.69 Aligned_cols=127 Identities=9% Similarity=-0.043 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhc--cCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHh
Q 039792 444 EALDLFHEMRVGFVPPGLLTFVSLLGLSSS--VFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDE 521 (819)
Q Consensus 444 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 521 (819)
+|.+++.+-.+. .+++...| .++ .. .+++++|...+... ...|...|++++|...|++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 566666666544 22222222 332 21 12467766666554 5578889999999998887
Q ss_pred cCC-----CC----eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhcc-CChHHHHHHHH
Q 039792 522 MNQ-----RD----IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQR-PN----EFTFAALITAASNL-GSLKHGQQFHN 586 (819)
Q Consensus 522 ~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~-g~~~~a~~~~~ 586 (819)
..+ .+ ..+|+.+...|...|++++|+..|++....... .+ ..++..+...+... |++++|...++
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 643 11 457888999999999999999999987652100 01 23444445555553 55555555555
Q ss_pred HHHH
Q 039792 587 HLIK 590 (819)
Q Consensus 587 ~~~~ 590 (819)
..++
T Consensus 143 ~Al~ 146 (292)
T 1qqe_A 143 LAGE 146 (292)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.78 E-value=8.8e-08 Score=96.61 Aligned_cols=197 Identities=13% Similarity=0.071 Sum_probs=119.1
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHhcCC-------C----CeeehhhhHHHHHhcCCHHHHHHHHHHHHHC------C
Q 039792 495 DVFAGSALIDAYSKCFSNKDARLVFDEMNQ-------R----DIVVWNAMLLGYTQQLENEEAIKLYLELLLS------Q 557 (819)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 557 (819)
...++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|++.|++.... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 445566677777777777777777765542 1 2346677778888888888888888887653 1
Q ss_pred CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcCCC----
Q 039792 558 QRP-NEFTFAALITAASNLGSLKHGQQFHNHLIKL------GLDF-DSFITSALIDMYAKCGSLEDAYETFGSTTW---- 625 (819)
Q Consensus 558 ~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 625 (819)
-.| ...++..+...+...|++++|...++.+.+. +-.| ...++..+...|.+.|++++|.+.|++...
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 112 3456677777788888888888888877764 1112 345667777888888888888887765431
Q ss_pred --------CChHhHHHHHHHHHhCCChHHHHHHHHHHHH-cCC---CCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 626 --------KDVACWNSMICTNAHHGEPMKALLLFREMII-EGL---EPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 626 --------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~---~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.....|..+...+...+....+..+...... ... .|+ ..++..+..+|...|++++|..++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222344444444433333222221111110 011 122 23577777788888888888888887764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-07 Score=81.23 Aligned_cols=127 Identities=16% Similarity=0.251 Sum_probs=65.1
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 039792 530 WNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK 609 (819)
Q Consensus 530 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 609 (819)
|..+...+...|++++|..+|+++.... +.+...+..+...+...|+++.|..+++.+.+.++. +...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~---------- 71 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEA---------- 71 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH----------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHH----------
Confidence 4445555666666666666666665432 223444555555555555566665555555554322 3333
Q ss_pred cCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHH
Q 039792 610 CGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQS 688 (819)
Q Consensus 610 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 688 (819)
|..+...+...|++++|++.++++.+ ..|+ ..++..+...+...|++++|...+++
T Consensus 72 ---------------------~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 72 ---------------------WYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp ---------------------HHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 44444444455555555555555544 2232 23444455555555555555555555
Q ss_pred HHh
Q 039792 689 MAG 691 (819)
Q Consensus 689 m~~ 691 (819)
+..
T Consensus 129 ~~~ 131 (136)
T 2fo7_A 129 ALE 131 (136)
T ss_dssp HHH
T ss_pred HHc
Confidence 543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-07 Score=80.98 Aligned_cols=129 Identities=12% Similarity=0.183 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLL 708 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l 708 (819)
.|..+...|...|++++|+.+++++.+ ..|+ ...+..+...+...|++++|..+++++...+ ..+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 355566666666666666666666665 2343 3455556666666667777777666666522 11233444444444
Q ss_pred hcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 709 GRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 709 ~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.+.+ +.+.|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 80 ~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQG-DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 4332 6667777777777788888889999999999999999999999988754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=5.4e-07 Score=91.19 Aligned_cols=163 Identities=9% Similarity=-0.003 Sum_probs=130.6
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHH-HH
Q 039792 559 RPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVACWNS-MI 635 (819)
Q Consensus 559 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~-li 635 (819)
+.+...+..+...+...|++++|...++.+.+..+. +...+..+...|.+.|++++|.+.+++.. .|+...+.. ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 344556677777888999999999999999998765 77888899999999999999999999987 455443332 33
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccch
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWN 714 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~ 714 (819)
..+...++.++|++.+++..+ ..|+. ..+..+..++...|++++|...|.++
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~------------------------- 245 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGH------------------------- 245 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------
T ss_pred HHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHH-------------------------
Confidence 346777888999999999988 67865 57888888999999988888776554
Q ss_pred hhhHHHHHHHHHccCCCC--chhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 715 VELGRYAAEMAISIDPMD--SGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 715 ~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
++.+|++ +..+..|+.+|...|+.++|...+++..
T Consensus 246 -----------l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 246 -----------LRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp -----------HHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -----------HhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 4556666 7789999999999999999988877653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.70 E-value=5e-07 Score=87.78 Aligned_cols=181 Identities=15% Similarity=-0.020 Sum_probs=100.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCC-h---HhHHHHH
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIKLGLDFD--SFITSALIDMYAKCGSLEDAYETFGSTT--WKD-V---ACWNSMI 635 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~---~~~~~li 635 (819)
.+..+...+...|++++|...++.+++..+... ...+..+..+|.+.|++++|.+.|++.. .|+ . ..|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 344445556666667777776666666543311 2345555666666666666666666544 222 1 1233333
Q ss_pred HHHHh------------------CCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc
Q 039792 636 CTNAH------------------HGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP 696 (819)
Q Consensus 636 ~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p 696 (819)
.++.. .|+.++|+..|+++++ ..|+.. .+...... +.. ...+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l----~~~------~~~~~~----- 148 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRL----VFL------KDRLAK----- 148 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHH----HHH------HHHHHH-----
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHH----HHH------HHHHHH-----
Confidence 33332 3445555555555554 344432 11111000 000 000000
Q ss_pred CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCc---hhHHHHHHHHHhCCCchHHHHHHHHHHhCCCc
Q 039792 697 GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDS---GSYTLLSNTFACNSMWADAKQVRKKMDLDGLM 765 (819)
Q Consensus 697 ~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 765 (819)
..-.+...|-+.+ +.+.|...++++++..|+++ ..+..++.+|...|++++|.+.++.+...+.+
T Consensus 149 ---~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 149 ---YEYSVAEYYTERG-AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHcC-cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0011122222211 78899999999999999986 57999999999999999999999999876543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-07 Score=92.09 Aligned_cols=199 Identities=11% Similarity=-0.054 Sum_probs=104.5
Q ss_pred eeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHH
Q 039792 527 IVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN----EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDF--DSFIT 600 (819)
Q Consensus 527 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~ 600 (819)
...+-.+...+.+.|++++|+..|+++.... |+ ...+..+..++...|+++.|...++.+++..+.. ....+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3344445555666666666666666665532 22 3445555555556666666666666665543321 12233
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhH-------------
Q 039792 601 SALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITF------------- 666 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~------------- 666 (819)
..+...|.+.+. ..+...|++++|+..|++.++ ..|+. ...
T Consensus 93 ~~lg~~~~~~~~-----------------------~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~~~~~~~~~ 147 (261)
T 3qky_A 93 YERAMCYYKLSP-----------------------PYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQKIRELRAKL 147 (261)
T ss_dssp HHHHHHHHHHCC-----------------------CTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-----------------------cccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHHHHHHHHHH
Confidence 334444444000 000005555555555555555 33432 122
Q ss_pred ----HHHHHHHHccCCHHHHHHHHHHHHh-cCCccC-chHHHHHHHHhhccc---------chhhhHHHHHHHHHccCCC
Q 039792 667 ----VGVLSACSHAGLIEDGLDHFQSMAG-FGIEPG-MEHYASVVSLLGRNV---------WNVELGRYAAEMAISIDPM 731 (819)
Q Consensus 667 ----~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~-~~~y~~li~~l~r~~---------w~~~~a~~~~~~~~~~~p~ 731 (819)
..+...+...|++++|+..|+++.+ ..-.|. ...+..+...+.+.+ -+.+.|...++++++..|+
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 4456667777888888888777776 332221 223444444443110 1667888888888888888
Q ss_pred Cch---hHHHHHHHHHhCCCchHH
Q 039792 732 DSG---SYTLLSNTFACNSMWADA 752 (819)
Q Consensus 732 ~~~---~~~~l~~~y~~~g~~~~a 752 (819)
++. ++..+..++...|+++++
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhh
Confidence 853 455566666555555443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.9e-06 Score=85.41 Aligned_cols=213 Identities=9% Similarity=0.014 Sum_probs=164.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---
Q 039792 541 LENEEAIKLYLELLLSQQRPNE-FTFAALITAASNLG--SLKHGQQFHNHLIKLGLDFDSFITSALIDMY----AKC--- 610 (819)
Q Consensus 541 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 610 (819)
...++|++++.+++.. .|+. ..|+.--..+...+ +++++..+++.++..+++ +..+|+.-...+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3446899999988874 5654 44566666667777 999999999999998876 666676655555 555
Q ss_pred CCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChH--HHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCC------
Q 039792 611 GSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPM--KALLLFREMIIEGLEPN-YITFVGVLSACSHAGL------ 678 (819)
Q Consensus 611 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~------ 678 (819)
++++++.++++++. ++|..+|+.-...+...|.++ ++++.++++++ ..|. ...|..-...+.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhh
Confidence 78999999998877 668889988888888888888 99999999998 5674 4678777777777776
Q ss_pred HHHHHHHHHHHHh-cCCccCchHH-HHHHHHhhcccchhhhHHHHHHHHHccC---CCCchhHHHHHHHHHhCCCchHHH
Q 039792 679 IEDGLDHFQSMAG-FGIEPGMEHY-ASVVSLLGRNVWNVELGRYAAEMAISID---PMDSGSYTLLSNTFACNSMWADAK 753 (819)
Q Consensus 679 ~~~a~~~~~~m~~-~g~~p~~~~y-~~li~~l~r~~w~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~a~ 753 (819)
++++++++++++. ..-..+.-+| ..++..+|+ ..+.....++++++++ |.++.++..|+.+|.+.|+.++|.
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR---SITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---CGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC---ChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 8999999999987 3333333322 345555555 4565667788888876 889999999999999999999999
Q ss_pred HHHHHHHh
Q 039792 754 QVRKKMDL 761 (819)
Q Consensus 754 ~~~~~m~~ 761 (819)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.64 E-value=4.4e-07 Score=90.35 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=126.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039792 546 AIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGL-DFDSFITSALIDMYAKCGSLEDAYETFGSTT 624 (819)
Q Consensus 546 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 624 (819)
|+..|++....+ .++..++..+..++...|++++|.+++...+..+. .-+...+..++.+|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566777766554 55666666777778888888888888888766654 2366777778888999999999999998877
Q ss_pred --CC-----ChHhHHHHHHH--HHhCC--ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-c
Q 039792 625 --WK-----DVACWNSMICT--NAHHG--EPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG-F 692 (819)
Q Consensus 625 --~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~ 692 (819)
.| +..+...|+.+ ....| ++++|..+|+++.+ -.|+..+-..+++++.+.|++++|.+.++.+.+ +
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44 23444555555 33334 89999999999876 456634445555588999999999999987765 2
Q ss_pred -CC------ccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHH
Q 039792 693 -GI------EPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYT 737 (819)
Q Consensus 693 -g~------~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~ 737 (819)
.+ .|+ ..+...+|.+.-..+ + .+.+..+++.+..|+++....
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lg-k--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQG-L--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTT-C--TTHHHHHHHHHTTCCCHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhC-h--HHHHHHHHHHHhCCCChHHHH
Confidence 11 233 333423322221111 2 567888889999998876654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.63 E-value=9.6e-08 Score=109.45 Aligned_cols=194 Identities=11% Similarity=-0.021 Sum_probs=146.4
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 039792 538 TQQLENEEAIKLYLELL--------LSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK 609 (819)
Q Consensus 538 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 609 (819)
...|++++|++.|++.. +. .+.+...+..+..++...|++++|...++.+++..+. +...+..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999887 32 2345567778888889999999999999999987665 77888889999999
Q ss_pred cCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHH
Q 039792 610 CGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDH 685 (819)
Q Consensus 610 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 685 (819)
.|++++|.+.|++.. +.+...|..+...|.+.|++++ ++.|++.++ +.|+. ..|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998866 4467788999999999999999 999999988 67865 5788888899999999999999
Q ss_pred HHHHHhcCCccC-chHHHHHHHHhhccc--c--hhhhHHHHHHHHHccCCCCchhHHH
Q 039792 686 FQSMAGFGIEPG-MEHYASVVSLLGRNV--W--NVELGRYAAEMAISIDPMDSGSYTL 738 (819)
Q Consensus 686 ~~~m~~~g~~p~-~~~y~~li~~l~r~~--w--~~~~a~~~~~~~~~~~p~~~~~~~~ 738 (819)
|++..+ +.|+ ...+..+..++-... . +.+....+.+.+..+.+.++..+..
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l 612 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQI 612 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHH
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 988765 3454 233444444442210 0 1355556666666777666665443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-06 Score=81.66 Aligned_cols=152 Identities=9% Similarity=0.004 Sum_probs=86.3
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHH-HHhCCChHH
Q 039792 570 TAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICT-NAHHGEPMK 646 (819)
Q Consensus 570 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~-~~~~g~~~~ 646 (819)
..+...|++++|...++.+++..+. +...+..+...|.+.|++++|...|++.. .|+...+..+... +...++..+
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 92 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESP 92 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccch
Confidence 3344455555555555555444332 44555556666666666666666666554 2232222211111 112222234
Q ss_pred HHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHH
Q 039792 647 ALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMA 725 (819)
Q Consensus 647 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~ 725 (819)
|++.+++.++ ..|+. ..+..+..++...|++++|... ++++
T Consensus 93 a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~------------------------------------~~~~ 134 (176)
T 2r5s_A 93 ELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALEL------------------------------------LWNI 134 (176)
T ss_dssp HHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHH------------------------------------HHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHH------------------------------------HHHH
Confidence 5556666655 45543 4455555556666655555554 5555
Q ss_pred HccCCCC--chhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 726 ISIDPMD--SGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 726 ~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
++.+|+. +..+..|+.+|...|++++|...+++..
T Consensus 135 l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 135 LKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 6667654 5689999999999999999999888764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-06 Score=83.48 Aligned_cols=176 Identities=10% Similarity=-0.040 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCChHhHHHHHHHHHhCC----ChHHHHHHHHHHH
Q 039792 581 GQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-WKDVACWNSMICTNAHHG----EPMKALLLFREMI 655 (819)
Q Consensus 581 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 655 (819)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++.. ..+..++..|...|.. + +.++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 45566666666666677777777666655 3355566666666665 5 6777777777776
Q ss_pred HcCCCCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhcc---cchhhhHHHHHHHHHc
Q 039792 656 IEGLEPNYITFVGVLSACSH----AGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRN---VWNVELGRYAAEMAIS 727 (819)
Q Consensus 656 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~---~w~~~~a~~~~~~~~~ 727 (819)
+.| +...+..|...|.. .+++++|.++|++..+.|... ....+..|-.+|-.. .-|.+.|...++++.+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 643 44566666666666 677888888887777655320 123333444444321 0178888889999988
Q ss_pred cCCCCchhHHHHHHHHHhC-C-----CchHHHHHHHHHHhCCC
Q 039792 728 IDPMDSGSYTLLSNTFACN-S-----MWADAKQVRKKMDLDGL 764 (819)
Q Consensus 728 ~~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~g~ 764 (819)
+ |+++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8 77888999999999864 3 89999999998887653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-06 Score=82.57 Aligned_cols=142 Identities=7% Similarity=-0.013 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccC
Q 039792 599 ITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAG 677 (819)
Q Consensus 599 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 677 (819)
.+..+...|...|++++|.+.|++...++...|..+...|...|++++|++.|++..+ +.|+. ..+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcc
Confidence 3455777888999999999999999988999999999999999999999999999998 56754 67888999999999
Q ss_pred CHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHH
Q 039792 678 LIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVR 756 (819)
Q Consensus 678 ~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 756 (819)
++++|.+.|++..+ ..-.+... + ........|..+..+..++.+|...|++++|.+.+
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~--------~-------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLID--------Y-------------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEE--------C-------------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCccHHH--------H-------------HHhccccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999999887 32222110 0 01112344555678888888888888888888888
Q ss_pred HHHHhCC
Q 039792 757 KKMDLDG 763 (819)
Q Consensus 757 ~~m~~~g 763 (819)
++..+..
T Consensus 145 ~~al~~~ 151 (213)
T 1hh8_A 145 ALATSMK 151 (213)
T ss_dssp HHHHTTC
T ss_pred HHHHHcC
Confidence 8776543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.54 E-value=4.1e-05 Score=83.42 Aligned_cols=367 Identities=10% Similarity=0.034 Sum_probs=188.2
Q ss_pred hcC-CchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCC-hHHH
Q 039792 236 KSG-RSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGR-VKMA 313 (819)
Q Consensus 236 ~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A 313 (819)
+.| +++.|..+|+.+... -|. ++.+.+.++|+..+.. .|++.+|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377778887777642 222 7888888888888774 4577888888877776653 3445
Q ss_pred HHHHhccc------CCCcccHHHHHHHHH----cCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHh---cCCcchhhHH
Q 039792 314 RRLFDEIE------VKNIISWTTLIGGYM----QNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSC---GSVEALEQGR 380 (819)
Q Consensus 314 ~~~~~~~~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~~a~ 380 (819)
..+|+... ..+...|...+.-+. .+++.+.+.++|++.+.. |.. .+..+-..+ ....+...+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhccccHH
Confidence 55555533 123345666665433 234566777777777752 211 111111111 1111111111
Q ss_pred HHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCC-------hhHHHHHH
Q 039792 381 QVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD----RNVVSYNAMIEGYSKEEK-------LSEALDLF 449 (819)
Q Consensus 381 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~-------~~~A~~~~ 449 (819)
.+..... +.+..|+.+++.+.. .+...|...+.--..++. .+.+..+|
T Consensus 144 ~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y 202 (493)
T 2uy1_A 144 KIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH 202 (493)
T ss_dssp HHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence 1111110 112223333222211 123345444443222211 23455667
Q ss_pred HHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHH-HHHHHhcC-----
Q 039792 450 HEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDA-RLVFDEMN----- 523 (819)
Q Consensus 450 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~----- 523 (819)
++.... .+.+...+...+.-+...|+.+.|..+++..+.. +.+...+. .|+...+.++. ..+.+...
T Consensus 203 e~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 203 NYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC-----
T ss_pred HHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccc
Confidence 776553 3344556666666666777777777777777776 22222221 22222111111 11111110
Q ss_pred -----C--CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCC
Q 039792 524 -----Q--RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASN-LGSLKHGQQFHNHLIKLGLDF 595 (819)
Q Consensus 524 -----~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~ 595 (819)
. .....|-..+....+.++.+.|..+|.+. .. ..++...|......-.. .++.+.|..+++..++..+.
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~- 352 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD- 352 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-
Confidence 0 01124555555555667778888888777 21 12233344322111111 23578888888887775433
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
++..+...++...+.|+.+.|..+|+++. +....|...+.--..+|+.+.+.++++++.+
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556667777777888888888888874 3456677777766777777777777777664
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=4.3e-07 Score=81.35 Aligned_cols=122 Identities=15% Similarity=0.066 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccC
Q 039792 599 ITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAG 677 (819)
Q Consensus 599 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 677 (819)
+...+.+.+...+.+.++.+ +.+.+...|..+...+.+.|++++|+..|++.++ +.|+. ..|..+..+|...|
T Consensus 11 ~~~~l~~~~~~~~~l~~al~----l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g 84 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINA----IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKE 84 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCC----SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHhC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHc
Confidence 34445555554444333321 1122445777788888889999999999999888 67864 56777888888888
Q ss_pred CHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHH
Q 039792 678 LIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRK 757 (819)
Q Consensus 678 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 757 (819)
++++|+..| +++++++|+++.+|..++.+|...|++++|.+.++
T Consensus 85 ~~~~Ai~~~------------------------------------~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 85 QFQQAADLY------------------------------------AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128 (151)
T ss_dssp CHHHHHHHH------------------------------------HHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHH------------------------------------HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 877776654 56677889999999999999999999999999999
Q ss_pred HHHhC
Q 039792 758 KMDLD 762 (819)
Q Consensus 758 ~m~~~ 762 (819)
+..+.
T Consensus 129 ~al~l 133 (151)
T 3gyz_A 129 LVIQH 133 (151)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.54 E-value=4.8e-07 Score=91.19 Aligned_cols=192 Identities=10% Similarity=-0.051 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHH
Q 039792 561 NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICT 637 (819)
Q Consensus 561 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 637 (819)
+...+..+...+...|++++|...++.+++..+. +...+..+...|.+.|++++|.+.+++.. +.+...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4455666777778888888888888888887654 77788888999999999999999998766 3466788889999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhh
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVE 716 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~ 716 (819)
|...|++++|+..|++..+ +.|+. ..+...+....+. .++. -+.........++......+..++. . +.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~l~~-~--~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTRLIA-A--ERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHHHHH-H--HHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHHHHH-H--HHH
Confidence 9999999999999999887 45533 1222222222211 1111 1222222334444444444444432 2 778
Q ss_pred hHHHHHHHHHccCCCCchhHHHHHHHHHhC-CCchHHHHHHHHHHhC
Q 039792 717 LGRYAAEMAISIDPMDSGSYTLLSNTFACN-SMWADAKQVRKKMDLD 762 (819)
Q Consensus 717 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~ 762 (819)
.|...++++++++|++......+..++... +++++|.++++++.+.
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888889999999999988888888888887 7899999999988653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-06 Score=87.10 Aligned_cols=233 Identities=7% Similarity=-0.057 Sum_probs=155.8
Q ss_pred hcCChHHHHHHHHhcCCCCee-ehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 039792 508 KCFSNKDARLVFDEMNQRDIV-VWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHN 586 (819)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 586 (819)
-.|.+..+..-...+...+.. .-.-+.++|...|++... ..-.|....+..+..-+ ..+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHH
Confidence 345666555544444322211 111234667777766531 11234443444433333 322 566677
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039792 587 HLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW-----KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 587 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (819)
...+.+ .++......+..+|...|++++|.+++.+... .+...+-.++..+.+.|+.+.|.+.+++|.+ ..|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCc
Confidence 666655 34555566889999999999999999998742 3456778889999999999999999999988 678
Q ss_pred -----CchhHHHHHHH--HHccC--CHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHcc----
Q 039792 662 -----NYITFVGVLSA--CSHAG--LIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISI---- 728 (819)
Q Consensus 662 -----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~---- 728 (819)
+..+...|..+ ....| ++.+|..+|+++.+.. |+......++.++-+.+ +++.|+..++.+++.
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g-~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQR-NIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHT-CHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcC-CHHHHHHHHHHHHHhcccc
Confidence 35666666655 33344 9999999999997622 33112122222222222 889999999988887
Q ss_pred ------CCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 729 ------DPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 729 ------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+|+|+.++..++.++...|+ +|.++++++++.
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 58899999888888888897 899999999863
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.51 E-value=7.3e-07 Score=85.33 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHcc
Q 039792 601 SALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHA 676 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 676 (819)
..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|+..|++.++ +.|+. .++..+..++...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 346667777777777777776655 34566777777777777777777777777777 56754 4566666666554
Q ss_pred CC--HHHHHHHHHHHHhcCCccCchHHHHHHHHhh--cccchhhhHHHHHHHHHccCCCCchhHHHHHHH
Q 039792 677 GL--IEDGLDHFQSMAGFGIEPGMEHYASVVSLLG--RNVWNVELGRYAAEMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 677 g~--~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~--r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 742 (819)
|. .+.+...++... .|+...+...-..++ ..+ +.+.|...+++++++.|++ .....|..+
T Consensus 136 ~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTT-RYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHH-THHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 43 233444444432 233222211111110 001 5677777778888877753 333444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.50 E-value=7.3e-07 Score=102.12 Aligned_cols=167 Identities=6% Similarity=-0.088 Sum_probs=138.8
Q ss_pred HhcCChHHHHHHHHhcC--------C---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 039792 507 SKCFSNKDARLVFDEMN--------Q---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNL 575 (819)
Q Consensus 507 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 575 (819)
...|++++|.+.|++.. + .+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999999876 2 355678888889999999999999999988752 34667888888889999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHH
Q 039792 576 GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFR 652 (819)
Q Consensus 576 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 652 (819)
|++++|...|+.+++..+. +...+..+..+|.+.|++++ .+.|++.. +.+...|..+...|...|++++|++.|+
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999998765 67888899999999999999 99998766 4567789999999999999999999999
Q ss_pred HHHHcCCCCCc-hhHHHHHHHHHccCC
Q 039792 653 EMIIEGLEPNY-ITFVGVLSACSHAGL 678 (819)
Q Consensus 653 ~m~~~g~~p~~-~t~~~ll~a~~~~g~ 678 (819)
+..+ +.|+. ..+..+..++...|.
T Consensus 559 ~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCT--TSTTHHHHHHHHHHHTC----
T ss_pred hhcc--cCcccHHHHHHHHHHHHccCC
Confidence 9987 78875 567777778777665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-06 Score=98.50 Aligned_cols=161 Identities=11% Similarity=-0.006 Sum_probs=120.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHH
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLF 651 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 651 (819)
.|++++|...++++.+..+. +...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999999887654 67889999999999999999999999765 446778999999999999999999999
Q ss_pred HHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhcc-cc-hhhhHHHHHHHHHc
Q 039792 652 REMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRN-VW-NVELGRYAAEMAIS 727 (819)
Q Consensus 652 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~-~w-~~~~a~~~~~~~~~ 727 (819)
++..+ +.|+. ..+..+..++...|++++|.+.+++..+.. | +...+..+...+... .| +.+.|...++++++
T Consensus 81 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99998 67865 678899999999999999999999998832 3 234555566655543 23 88999999999999
Q ss_pred cCCCCchhHHHHH
Q 039792 728 IDPMDSGSYTLLS 740 (819)
Q Consensus 728 ~~p~~~~~~~~l~ 740 (819)
.+|++...|..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999999998887
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.7e-06 Score=79.89 Aligned_cols=162 Identities=9% Similarity=-0.026 Sum_probs=120.3
Q ss_pred CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----ChHHHHHHHHHHHHhCCCCchhHHH
Q 039792 526 DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLG----SLKHGQQFHNHLIKLGLDFDSFITS 601 (819)
Q Consensus 526 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~ 601 (819)
++..+..+...|...+++++|++.|++..+.| +...+..+-..+.. + ++++|..+++...+.| ++..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44555666666777788888888888877754 45566666666666 5 7888888888887765 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHHhcCCCCC-----hHhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCchhHHH
Q 039792 602 ALIDMYAK----CGSLEDAYETFGSTTWKD-----VACWNSMICTNAH----HGEPMKALLLFREMIIEGLEPNYITFVG 668 (819)
Q Consensus 602 ~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 668 (819)
.|..+|.. .+++++|.+.|++....+ +.++..|...|.. .++.++|+..|++..+. .++...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 78888877 788999999998877433 5788888888888 78899999999999884 344556777
Q ss_pred HHHHHHcc-C-----CHHHHHHHHHHHHhcCCcc
Q 039792 669 VLSACSHA-G-----LIEDGLDHFQSMAGFGIEP 696 (819)
Q Consensus 669 ll~a~~~~-g-----~~~~a~~~~~~m~~~g~~p 696 (819)
|...|... | +.++|...|+...+.|...
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 77776643 3 7899999988888766443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.48 E-value=4.6e-06 Score=80.85 Aligned_cols=178 Identities=10% Similarity=-0.049 Sum_probs=99.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC--CCe----eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH-HHHHHHH
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ--RDI----VVWNAMLLGYTQQLENEEAIKLYLELLLSQQR-PNE-FTFAALI 569 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~t~~~ll 569 (819)
.+..+...+.+.|++++|...|+.+.+ |+. ..+..+..+|.+.|++++|+..|++..+.... |.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 344455566666777777777766553 321 24555566666677777777777766653211 111 1222222
Q ss_pred HHHhc------------------cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhH
Q 039792 570 TAASN------------------LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACW 631 (819)
Q Consensus 570 ~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 631 (819)
.++.. .|+.++|...++.+++..+. +.....++..+..-.+... ...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~--------------~~~ 150 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLA--------------KYE 150 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHH--------------HHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHH--------------HHH
Confidence 22221 23444444444444443322 1222111111000000000 011
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 039792 632 NSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAGF 692 (819)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 692 (819)
..+...|...|++++|+..|+++++ ..|+. ..+..+..++.+.|+.++|.+.++.+...
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 2456678889999999999999998 56764 35778888999999999999999988763
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=89.04 Aligned_cols=141 Identities=9% Similarity=-0.045 Sum_probs=108.2
Q ss_pred HHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 039792 616 AYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGI 694 (819)
Q Consensus 616 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 694 (819)
..+.++...+.+...+..+...+...|++++|+..|++..+ ..|+. ..+..+..++...|++++|...+++....
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 33444444444555667778888899999999999999988 67865 57888888999999999999999988662
Q ss_pred ccCchH--HHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 695 EPGMEH--YASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 695 ~p~~~~--y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.|+... ....+....+. +.+.+...++++++.+|+++..+..|+.+|...|++++|...++++.+.
T Consensus 181 ~p~~~~~~~~~~~~l~~~~--~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQA--ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHH--TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHhhc--ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 343322 22222222222 5566888999999999999999999999999999999999999988763
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-06 Score=82.66 Aligned_cols=126 Identities=15% Similarity=0.102 Sum_probs=54.3
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 039792 533 MLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGS 612 (819)
Q Consensus 533 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 612 (819)
+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+++..+. +...+..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 4444555555555555555544431 123344444444555555555555555555554433 34444444444433322
Q ss_pred --HHHHHHHHhcCCCCChH--hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 613 --LEDAYETFGSTTWKDVA--CWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 613 --~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
.+.+...++....++.. .|..+..++...|++++|+..|++.++ +.|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~ 189 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPS 189 (208)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCC
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCC
Confidence 23334444444433322 122233333344445555555555444 4444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-06 Score=96.87 Aligned_cols=149 Identities=8% Similarity=-0.034 Sum_probs=116.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 039792 540 QLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYET 619 (819)
Q Consensus 540 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 619 (819)
.|++++|++.|++..+.. +-+...+..+...+...|++++|...++...+..+. +...+..+...|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999987642 335778888999999999999999999999987654 688899999999999999999999
Q ss_pred HhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHcc---CCHHHHHHHHHHHHhc
Q 039792 620 FGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHA---GLIEDGLDHFQSMAGF 692 (819)
Q Consensus 620 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~---g~~~~a~~~~~~m~~~ 692 (819)
|++.. +.+...|..+...|...|++++|++.|++..+ +.|+. ..+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99866 45678999999999999999999999999998 67764 6788888999999 9999999999999883
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.9e-05 Score=79.32 Aligned_cols=92 Identities=7% Similarity=0.004 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-----chhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----h
Q 039792 563 FTFAALITAASNLGSLKHGQQFHNHLIKLGLDF-----DSFITSALIDMYAKCGSLEDAYETFGSTTW-----KD----V 628 (819)
Q Consensus 563 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~ 628 (819)
.++..+...+.. |+++.|...++..++..... ...+++.+...|.+.|++++|.+.|++... ++ .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 345555566666 77777777777666432110 134555566666667777766666665441 11 1
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMI 655 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 655 (819)
..|..+...+...|++++|+..|++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 244455555666667777777666665
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=4.5e-07 Score=81.56 Aligned_cols=135 Identities=9% Similarity=-0.063 Sum_probs=73.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 039792 538 TQQLENEEAIKLYLELLLSQQRPN-EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDA 616 (819)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 616 (819)
...|++++|++.+++.... .|+ ...+..+...+...|+++.|...++.+++..+. +...+..+..+|.+.|++++|
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 3445556666655554432 222 223344555556666666666666666665543 555666666666666666666
Q ss_pred HHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHH-HHHHHHcCCCCCc-hhHHHHHHHHHccC
Q 039792 617 YETFGSTT---WKDVACWNSMICTNAHHGEPMKALLL-FREMIIEGLEPNY-ITFVGVLSACSHAG 677 (819)
Q Consensus 617 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~-~t~~~ll~a~~~~g 677 (819)
...|++.. +.+...|..+...|.+.|+.++|.+. +++.++ +.|+. .+|......+...|
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 66666544 33455666666666666666555443 466665 56654 33444444444444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2e-05 Score=79.91 Aligned_cols=158 Identities=13% Similarity=0.062 Sum_probs=105.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--C-Ch-----H-hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-----hHHH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTTW--K-DV-----A-CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-----TFVG 668 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~~--~-~~-----~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ 668 (819)
.+..+.+.|++++|.+.+++... + +. . .+..+...+...|++++|+..|++..+.....+.. +++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888876442 1 11 1 22345566666778888888888888732222221 5777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh-c----CCccCc-hHHHHHHHHhhcccchhhhHHHHHHHHHccCCCC------chhH
Q 039792 669 VLSACSHAGLIEDGLDHFQSMAG-F----GIEPGM-EHYASVVSLLGRNVWNVELGRYAAEMAISIDPMD------SGSY 736 (819)
Q Consensus 669 ll~a~~~~g~~~~a~~~~~~m~~-~----g~~p~~-~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~------~~~~ 736 (819)
+..+|...|++++|..+|+++.+ . +..|.. ..|..+...|.+.+ +.+.|...+++++++.++. +..|
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88888888888888888888875 1 211111 13344444443332 7788888888888776543 6789
Q ss_pred HHHHHHHHhCCC-chHHHHHHHHHHh
Q 039792 737 TLLSNTFACNSM-WADAKQVRKKMDL 761 (819)
Q Consensus 737 ~~l~~~y~~~g~-~~~a~~~~~~m~~ 761 (819)
..++.+|...|+ +++|.+.+++..+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 5999998887754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.8e-06 Score=78.72 Aligned_cols=153 Identities=12% Similarity=-0.025 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 039792 499 GSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITA-ASN 574 (819)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~ 574 (819)
...+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++.... .|+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34455667778888888888887765 34566777777788888888888888776653 2333322211111 111
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CC---ChHhHHHHHHHHHhCCChHHHHH
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT--WK---DVACWNSMICTNAHHGEPMKALL 649 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~A~~ 649 (819)
.+....+...++..++..+. +...+..+...|...|++++|...|+++. .| +...|..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 11222344555555554433 34444444445555555555444444333 11 12234444444444444444444
Q ss_pred HHHHH
Q 039792 650 LFREM 654 (819)
Q Consensus 650 ~~~~m 654 (819)
.|++.
T Consensus 166 ~y~~a 170 (176)
T 2r5s_A 166 KYRRQ 170 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.39 E-value=2e-06 Score=88.00 Aligned_cols=219 Identities=9% Similarity=-0.033 Sum_probs=123.2
Q ss_pred cCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 039792 509 CFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHL 588 (819)
Q Consensus 509 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 588 (819)
.|++++|.+++++..+.....+ +...+++++|...|.+. ...+...|++++|...+...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSF------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCS------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccc------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHH
Confidence 4667788888876543111111 00135666666666554 33455667777777777666
Q ss_pred HHhCCC---C--chhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCC----hHhHHHHHHHHHhCCChHHHHHHHHHH
Q 039792 589 IKLGLD---F--DSFITSALIDMYAKCGSLEDAYETFGSTT-----WKD----VACWNSMICTNAHHGEPMKALLLFREM 654 (819)
Q Consensus 589 ~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 654 (819)
.+.... + -...++.+..+|.+.|++++|.+.|++.. ..+ ..+|+.+...|.. |++++|++.|++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 542111 0 13456667777777777777777666533 111 2356667777766 8888888877777
Q ss_pred HHcCCCCC-------chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccC---c-hHHHHHHHHhhcccchhhhHHHHH
Q 039792 655 IIEGLEPN-------YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPG---M-EHYASVVSLLGRNVWNVELGRYAA 722 (819)
Q Consensus 655 ~~~g~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~---~-~~y~~li~~l~r~~w~~~~a~~~~ 722 (819)
++ +.|+ ..++..+...+...|++++|+..|++... ..-.+. . ..+..+...+-..+ +.+.|...+
T Consensus 142 l~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~ 218 (307)
T 2ifu_A 142 AA--VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA-DYVAAQKCV 218 (307)
T ss_dssp HH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HH--HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 65 2221 23566677777778888888888877766 211111 1 12222222222111 677777788
Q ss_pred HHHHccCCCCchh-----HHHHHHHHHhCCCchHHHH
Q 039792 723 EMAISIDPMDSGS-----YTLLSNTFACNSMWADAKQ 754 (819)
Q Consensus 723 ~~~~~~~p~~~~~-----~~~l~~~y~~~g~~~~a~~ 754 (819)
++++ ++|..... ...++..| ..|+.+++.+
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8887 77765432 33344444 4566555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.39 E-value=3e-06 Score=73.39 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhh
Q 039792 632 NSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLG 709 (819)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~ 709 (819)
......|.+.|++++|++.|++.++ +.|+. ..|..+..++.+.|++++|++.|++.++. .|+ ...|..+...+.
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHH
Confidence 3344444444444444444444444 33432 33444444444444444444444444431 111 122222222222
Q ss_pred cccchhhhHHHHHHHHHccCCCCchhHHHHHHH
Q 039792 710 RNVWNVELGRYAAEMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 710 r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 742 (819)
..+ +.+.|...++++++++|+++.++..|+++
T Consensus 93 ~~~-~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMR-EWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCC-CHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 211 44555555666667777777776666554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00016 Score=78.81 Aligned_cols=195 Identities=12% Similarity=0.013 Sum_probs=123.4
Q ss_pred HHHHHHHhcCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHH
Q 039792 413 EARKVFDVMAD---RNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIK 489 (819)
Q Consensus 413 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 489 (819)
.+..+|++... .+...|-..+.-+.+.|+.++|..+|++.... |....+......+.... . +++.+.+
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~---~---~~~~l~~ 267 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEE---A---VYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT---H---HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchh---H---HHHHHHH
Confidence 34556655543 23456777777777888888888888888766 44333222111111111 1 1222222
Q ss_pred hC------------CccchhhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHH-H---HHhcCCHHHHHHHHHHH
Q 039792 490 YG------------VFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLL-G---YTQQLENEEAIKLYLEL 553 (819)
Q Consensus 490 ~g------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-~---~~~~g~~~~A~~~~~~m 553 (819)
.- ......+|...++.+.+.+..+.|..+|+....|. .++...+. + +...++.+.|..+|+..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 01123456666777777888999999999984343 23333221 1 12234799999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 039792 554 LLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGST 623 (819)
Q Consensus 554 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 623 (819)
.+.. +-+...+...+.-....|+.+.|+.+++.+. .....|...++.-...|+.+.+.+++++.
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8753 2234445556666678899999999999872 26788999999888899999999887664
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=9.5e-06 Score=77.70 Aligned_cols=122 Identities=9% Similarity=-0.013 Sum_probs=59.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 039792 535 LGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLE 614 (819)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 614 (819)
..+...|++++|+..|++. +.|+...+..+...+...|++++|...++..++..+. +...+..+..+|.+.|+++
T Consensus 14 ~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcccHH
Confidence 3344444444444444433 1334444444444444455555555555444444322 3344444444444444444
Q ss_pred HHHHHHhcCC---CC----------------ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc
Q 039792 615 DAYETFGSTT---WK----------------DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY 663 (819)
Q Consensus 615 ~A~~~~~~~~---~~----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (819)
+|.+.|++.. +. ....|..+...|...|++++|.+.|++..+ +.|+.
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 4444444322 11 124556666666666666666666666665 45543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-06 Score=77.56 Aligned_cols=97 Identities=11% Similarity=0.054 Sum_probs=71.1
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVV 705 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li 705 (819)
+...|..+...+...|++++|+..|++.+. +.|+. ..|..+..+|...|++++|...
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------------------- 77 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHS-------------------- 77 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH--------------------
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHH--------------------
Confidence 344556666677777777777777777776 55643 4566666677777766666555
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 78 ----------------~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 78 ----------------YSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp ----------------HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556677888899999999999999999999999888765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=6.1e-05 Score=76.53 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=149.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-CH
Q 039792 538 TQQLENEEAIKLYLELLLSQQRPN-EFTFAALITAASNLG-SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKC-G-SL 613 (819)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~ 613 (819)
...+..++|+++++++... .|+ ...|+.--..+...| .++++..+++.++...++ +..+|+.-...+.+. + +.
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 3345557889988888874 454 444555555566667 589999999999988776 777888777777776 6 88
Q ss_pred HHHHHHHhcCC---CCChHhHHHHHHHHHhCCChH--------HHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCC---
Q 039792 614 EDAYETFGSTT---WKDVACWNSMICTNAHHGEPM--------KALLLFREMIIEGLEPN-YITFVGVLSACSHAGL--- 678 (819)
Q Consensus 614 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--- 678 (819)
+++.++++++. .+|..+|+--.....+.|.++ ++++.++++++ ..|+ ...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcccccc
Confidence 89999998877 456677876655555555555 89999999998 5674 4678888888888776
Q ss_pred ----HHHHHHHHHHHHh-cCCccCchHH-HHHHHHhhcc-------cc-----h----hhhHHHHHHHHHccC------C
Q 039792 679 ----IEDGLDHFQSMAG-FGIEPGMEHY-ASVVSLLGRN-------VW-----N----VELGRYAAEMAISID------P 730 (819)
Q Consensus 679 ----~~~a~~~~~~m~~-~g~~p~~~~y-~~li~~l~r~-------~w-----~----~~~a~~~~~~~~~~~------p 730 (819)
++++++++++++. ..-..+.-+| ..++...|+. .| . ...-...+..++... +
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 7889999888887 3333333333 3445544443 12 0 111122222222222 4
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 731 MDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 731 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
..+-+...|+.+|...|+.++|.++++.+.+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6677888999999999999999999999864
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.25 E-value=6.9e-06 Score=73.39 Aligned_cols=93 Identities=11% Similarity=-0.033 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHH
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSA 672 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 672 (819)
...+..+...|.+.|++++|.+.|++.. +.+...|..+..+|...|++++|+..|++..+ +.|+. ..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHH
Confidence 4455666677777777777777777665 44667788888888888888888888888887 67754 577788888
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 039792 673 CSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~ 691 (819)
|...|++++|...|++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888877
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.24 E-value=6.5e-06 Score=85.23 Aligned_cols=126 Identities=10% Similarity=0.016 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----------------hhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----------------ITFVGVLSACSHAGLIEDGLDHFQSMAGFG 693 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 693 (819)
.|..+...|.+.|++++|+..|++.++ +.|+. ..|..+..++.+.|++++|+..+++.++..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 445555555555555555555555555 34443 455555556666666666666666665521
Q ss_pred Ccc-CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHH-HHHHHHHH
Q 039792 694 IEP-GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADA-KQVRKKMD 760 (819)
Q Consensus 694 ~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m~ 760 (819)
| +...|..+..+|...+ +.+.|...++++++++|+++.++..++.+|...|++++| .+.+++|.
T Consensus 227 --p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 --SNNEKGLSRRGEAHLAVN-DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp --TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2223333333333322 666677777888889999999999999999999999999 44566554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-06 Score=81.80 Aligned_cols=156 Identities=8% Similarity=-0.108 Sum_probs=99.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----------------
Q 039792 603 LIDMYAKCGSLEDAYETFGSTTW---KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY---------------- 663 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------------- 663 (819)
.+......|++++|.+.++.... .....|..+...+...|++++|+..|++.++ +.|+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHH
Confidence 44445556677777776665432 2344677778888888999999999998887 45543
Q ss_pred -hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHH
Q 039792 664 -ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSN 741 (819)
Q Consensus 664 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 741 (819)
..+..+..+|...|++++|...+++..+. .| +...+..+..++...+ +.+.|...++++++++|+++..+..++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFG-FLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 46777788888999999999999988873 23 2334444444444332 7888999999999999999999999999
Q ss_pred HHHhCCCchHHH-HHHHHHHhCC
Q 039792 742 TFACNSMWADAK-QVRKKMDLDG 763 (819)
Q Consensus 742 ~y~~~g~~~~a~-~~~~~m~~~g 763 (819)
++...|+.+++. ..++.|-..|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 165 CVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 999998888877 5556554443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3.7e-06 Score=75.23 Aligned_cols=100 Identities=11% Similarity=-0.000 Sum_probs=79.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLS 671 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 671 (819)
+...+..+...+.+.|++++|...|++.. +.+...|..+..+|...|++++|++.|++.++ +.|+. ..+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHH
Confidence 45566667778888888888888888765 45777888888889999999999999999988 67754 57888888
Q ss_pred HHHccCCHHHHHHHHHHHHh-cCCccC
Q 039792 672 ACSHAGLIEDGLDHFQSMAG-FGIEPG 697 (819)
Q Consensus 672 a~~~~g~~~~a~~~~~~m~~-~g~~p~ 697 (819)
++...|++++|...|++..+ .+..|.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 89999999999999888877 444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.5e-05 Score=76.08 Aligned_cols=225 Identities=8% Similarity=-0.014 Sum_probs=141.9
Q ss_pred hHHHHHHHHhcCC--C-CeeehhhhHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hcc---CChH
Q 039792 512 NKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQL--ENEEAIKLYLELLLSQQRPNEFTFAALITAA----SNL---GSLK 579 (819)
Q Consensus 512 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~---g~~~ 579 (819)
.++|..+++.+.. | +...|+.--..+...| ++++++++++.+.... +-+..+|+.--..+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4566666666553 2 2345665555666666 7777777777777642 11223333322222 333 6777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH--HHHHHHhcCC---CCChHhHHHHHHHHHhCCC------hHHHH
Q 039792 580 HGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLE--DAYETFGSTT---WKDVACWNSMICTNAHHGE------PMKAL 648 (819)
Q Consensus 580 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~---~~~~~~~~~li~~~~~~g~------~~~A~ 648 (819)
++..+++.+.+..++ +...|+.-.-.+.+.|.++ ++.+.++++. ..|...|+.-.......|+ +++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 777888877777665 6677777777777777776 7777777766 4566677766666666565 77888
Q ss_pred HHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHH-HHHHHHHHHhcC-Ccc-CchHHHHHHHHhhcccchhhhHHHHHHH
Q 039792 649 LLFREMIIEGLEPNY-ITFVGVLSACSHAGLIED-GLDHFQSMAGFG-IEP-GMEHYASVVSLLGRNVWNVELGRYAAEM 724 (819)
Q Consensus 649 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~g-~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~ 724 (819)
+.+++++. ..|+. ..|+.+...+.+.|+..+ ..++..+..+.+ ..| +...+..+.+.+.+.+ +.+.|..+++.
T Consensus 207 ~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~-~~~~A~~~~~~ 283 (306)
T 3dra_A 207 NYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK-KYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 88888887 66754 567777777777776433 445665555422 122 3445566666665433 67788888888
Q ss_pred HHc-cCCCCchhHHHHHH
Q 039792 725 AIS-IDPMDSGSYTLLSN 741 (819)
Q Consensus 725 ~~~-~~p~~~~~~~~l~~ 741 (819)
+.+ .+|-...+|...++
T Consensus 284 l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGGGHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHh
Confidence 886 78887777776554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.20 E-value=2e-05 Score=71.80 Aligned_cols=128 Identities=9% Similarity=0.012 Sum_probs=78.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLL 708 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l 708 (819)
.|..+...+...|++++|+..|++..+ ..|+ ..++..+..++...|++++|...+++..+.. ..+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 455555566666666666666666665 3443 3455556666666666666666666666521 11223333333333
Q ss_pred hcccchhhhHHHHHHHHHccCCCCchhHHHHHH--HHHhCCCchHHHHHHHHHHh
Q 039792 709 GRNVWNVELGRYAAEMAISIDPMDSGSYTLLSN--TFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 709 ~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~y~~~g~~~~a~~~~~~m~~ 761 (819)
.+.+ +.+.|...+++++++.|++...+..++. .+...|++++|.+.+++..+
T Consensus 92 ~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALG-KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 3322 6666777777778888888877755444 48888999999998887653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.19 E-value=2.4e-05 Score=66.91 Aligned_cols=115 Identities=13% Similarity=0.200 Sum_probs=61.9
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSL 707 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 707 (819)
..|..+...+...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|..+++++.+.. ..+...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555555555566666666665555 2343 2345555555555666666666665555421 1122333333333
Q ss_pred hhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCC
Q 039792 708 LGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNS 747 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 747 (819)
+.+.+ +.+.|...++++++..|+++..+..++.++...|
T Consensus 87 ~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQG-DYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 33322 5555666666666677777777777777765543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.8e-05 Score=68.87 Aligned_cols=118 Identities=8% Similarity=-0.008 Sum_probs=79.1
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVV 705 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li 705 (819)
+...|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.+++..+.. ..+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 445667777777777777777777777776 4554 3566667777777777777777777776621 11233444444
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCC
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSM 748 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 748 (819)
..+.+.+ +.+.|...++++++++|.+...+..++.+|...|+
T Consensus 92 ~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMK-DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHh-hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 4444332 66777777788888888888888888888877654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.5e-05 Score=67.46 Aligned_cols=88 Identities=10% Similarity=0.060 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccC
Q 039792 602 ALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAG 677 (819)
Q Consensus 602 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 677 (819)
.....|.+.|++++|.+.|++.. +.+...|..+..+|...|++++|++.|++.++ +.|+. ..|..+..++...|
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHCC
Confidence 34444444555555555444433 23344455555555555555555555555554 34433 34455555555555
Q ss_pred CHHHHHHHHHHHHh
Q 039792 678 LIEDGLDHFQSMAG 691 (819)
Q Consensus 678 ~~~~a~~~~~~m~~ 691 (819)
++++|.+.|++..+
T Consensus 96 ~~~~A~~~~~~al~ 109 (126)
T 4gco_A 96 EWSKAQRAYEDALQ 109 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-05 Score=76.26 Aligned_cols=151 Identities=13% Similarity=0.005 Sum_probs=87.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CChHhHHHHHHHHHhCCCh
Q 039792 574 NLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW---------KDVACWNSMICTNAHHGEP 644 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~ 644 (819)
..|++++|.++++.+.. .+......+..+...|...|++++|.+.+++... ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45677777774444432 2223455666666677777777777666655431 1223555666666666777
Q ss_pred HHHHHHHHHHHHcC-CCC-C----chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhH
Q 039792 645 MKALLLFREMIIEG-LEP-N----YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELG 718 (819)
Q Consensus 645 ~~A~~~~~~m~~~g-~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a 718 (819)
++|.+.+++..+.- -.| + ...+..+...+...|++++|...+++..+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------------------- 135 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV--------------------------- 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---------------------------
Confidence 77766666665410 012 1 12355555566666666666666665543
Q ss_pred HHHHHHHHccCC--CC----chhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 719 RYAAEMAISIDP--MD----SGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 719 ~~~~~~~~~~~p--~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+ ++ ...+..++.+|...|++++|.+.+++..+
T Consensus 136 ---------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 136 ---------YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp ---------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------HHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 211 11 23467889999999999999988887754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.17 E-value=8.2e-05 Score=75.30 Aligned_cols=159 Identities=11% Similarity=-0.009 Sum_probs=114.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-c----hhHHHH
Q 039792 533 MLLGYTQQLENEEAIKLYLELLLSQ-QRPNEF----TFAALITAASNLGSLKHGQQFHNHLIKLGLDF-D----SFITSA 602 (819)
Q Consensus 533 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~ 602 (819)
.+..+...|++++|.+++++..... ..|+.. .+..+...+...++++.|...+..+.+..... + ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566778888888988888877632 122221 23345556677788999999999888743322 2 236888
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC-----C-CC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-chhHH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT-----W-KD----VACWNSMICTNAHHGEPMKALLLFREMIIE----GLEPN-YITFV 667 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~-----~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 667 (819)
+...|...|++++|.+.|+++. . .+ ..+|..+...|...|++++|++.+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999998887655 1 22 236788889999999999999999988752 22222 35688
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHh
Q 039792 668 GVLSACSHAG-LIEDGLDHFQSMAG 691 (819)
Q Consensus 668 ~ll~a~~~~g-~~~~a~~~~~~m~~ 691 (819)
.+..++.+.| .+++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888999999 46999999988865
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.4e-05 Score=77.31 Aligned_cols=159 Identities=12% Similarity=0.003 Sum_probs=105.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCChHHHHHHHHHHHHhCCC---Cc--hhHHHH
Q 039792 533 MLLGYTQQLENEEAIKLYLELLLSQQRPNE-----FTFAALITAASNLGSLKHGQQFHNHLIKLGLD---FD--SFITSA 602 (819)
Q Consensus 533 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~~~~~ 602 (819)
.+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...+....+.... +. ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 455666777777777777766654221111 12233444556777888888888777653221 11 346777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC-----CCC-----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCC-chhHH
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT-----WKD-----VACWNSMICTNAHHGEPMKALLLFREMIIEG----LEPN-YITFV 667 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~~t~~ 667 (819)
+...|...|++++|.+.|++.. .++ ..+|+.+...|...|++++|+..+++.++.. ..+. ..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 8888888888888888887654 222 2477888888889999999999988877521 1111 35677
Q ss_pred HHHHHHHccCCHHHH-HHHHHHHHh
Q 039792 668 GVLSACSHAGLIEDG-LDHFQSMAG 691 (819)
Q Consensus 668 ~ll~a~~~~g~~~~a-~~~~~~m~~ 691 (819)
.+..++...|++++| ..++++...
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 888889999999999 777777654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.4e-05 Score=67.65 Aligned_cols=117 Identities=13% Similarity=0.045 Sum_probs=75.0
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVS 706 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~ 706 (819)
..|..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|.+.+++.... .|+ ...+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHH
Confidence 3455566666666677777777766665 3443 345666666666677777777776666652 122 233444444
Q ss_pred HhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCch
Q 039792 707 LLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWA 750 (819)
Q Consensus 707 ~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 750 (819)
.+.+.+ +.+.|...+++++++.|+++..+..++.+|...|+++
T Consensus 89 ~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLN-KHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhC-CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 443332 6667777777888888888888999999988888763
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.8e-05 Score=73.17 Aligned_cols=115 Identities=8% Similarity=0.065 Sum_probs=70.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHH-HHhCCCh--HHH
Q 039792 574 NLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICT-NAHHGEP--MKA 647 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~-~~~~g~~--~~A 647 (819)
..|+++.|...++...+..+. +...+..+...|...|++++|...|++.. +.+...|..+... |...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 345555555556555555433 45566666666666666666666666544 3355566666666 6666776 777
Q ss_pred HHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 648 LLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+..|++..+ ..|+. ..+..+...+...|++++|...|+++.+
T Consensus 101 ~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALA--LDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 777777776 45653 4566666677777777777777777766
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.9e-05 Score=69.93 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=71.7
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSL 707 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 707 (819)
..+..+...+...|++++|+..|++.+. ..|+. ..|..+..++...|++++|...
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~---------------------- 74 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQS---------------------- 74 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHH----------------------
Confidence 3455566677777888888888887777 56654 4566666677777766666555
Q ss_pred hhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 708 LGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 75 --------------~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 75 --------------YSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp --------------HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566677899999999999999999999999999988765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.14 E-value=3.7e-05 Score=69.88 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=84.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhC
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHH 641 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 641 (819)
+..+...+...|+++.|...+....+..+. +...+..+...|...|++++|.+.|++.. +.+...|..+...+...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 444455556666666666666666665443 56666667777777777777777776654 34566777788888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCc-hhHH--HHHHHHHccCCHHHHHHHHHHHHh
Q 039792 642 GEPMKALLLFREMIIEGLEPNY-ITFV--GVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~-~t~~--~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
|++++|.+.|++..+ +.|+. ..+. .....+...|++++|.+.+.....
T Consensus 95 ~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 95 GKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888887 55654 3443 333346677888888888876644
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00016 Score=73.15 Aligned_cols=167 Identities=11% Similarity=-0.055 Sum_probs=108.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCC----hH
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIKLGLDFD-----SFITSALIDMYAKCGSLEDAYETFGSTT-----WKD----VA 629 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~----~~ 629 (819)
.+...+..+...|++++|...+....+...... ...+..+...|...|++++|.+.+++.. ..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455667788888888888887776543321 1223445666777788888888776543 111 33
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCc-----hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHH
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIE-GLEPNY-----ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYAS 703 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~ 703 (819)
+|+.+...|...|++++|+..|++..+. ...|+. .++..+...|...|++++|..++++..+..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~---------- 226 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS---------- 226 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH----------
Confidence 6777888888888888888888887631 022331 367777778888888888888877765310
Q ss_pred HHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHH-HHHHHHHH
Q 039792 704 VVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADA-KQVRKKMD 760 (819)
Q Consensus 704 li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m~ 760 (819)
.. ....+.-+..|..++.+|...|++++| ...+++..
T Consensus 227 -------------------~~-~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 227 -------------------CR-INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp -------------------HH-TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred -------------------Hh-cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 00 000111246788999999999999999 77676654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=2e-05 Score=67.99 Aligned_cols=95 Identities=14% Similarity=0.029 Sum_probs=73.6
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSL 707 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 707 (819)
..|..+...+...|++++|+..|++.++ +.|+. ..|..+..++.+.|++++|...
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~---------------------- 60 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIAD---------------------- 60 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHH----------------------
Confidence 4566677777888888888888888887 56654 5677777777777777766655
Q ss_pred hhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 708 LGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 61 --------------~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 61 --------------CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp --------------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4555667888889999999999999999999999988765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-05 Score=86.90 Aligned_cols=114 Identities=11% Similarity=0.048 Sum_probs=75.3
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHH
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 647 (819)
.+.+.|++++|...++++++..+. +...+..+..+|.+.|++++|.+.+++.. +.+..+|..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 455677888888888877776544 56677777777777777777777777654 34556777777777777777777
Q ss_pred HHHHHHHHHcCCCCCc-hhHHHHHHH--HHccCCHHHHHHHHH
Q 039792 648 LLLFREMIIEGLEPNY-ITFVGVLSA--CSHAGLIEDGLDHFQ 687 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~~-~t~~~ll~a--~~~~g~~~~a~~~~~ 687 (819)
++.|++..+ +.|+. ..+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHH--HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777776 45643 344444444 666677777777766
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.09 E-value=5.1e-05 Score=64.82 Aligned_cols=91 Identities=14% Similarity=0.219 Sum_probs=42.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhC
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHH 641 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 641 (819)
+..+...+...|+++.|..+++.+.+..+. +...+..+...|.+.|++++|...|+++. +.+..+|..+...|...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 333444444444444444444444443321 33344444444444455555444444433 22344445555555555
Q ss_pred CChHHHHHHHHHHHH
Q 039792 642 GEPMKALLLFREMII 656 (819)
Q Consensus 642 g~~~~A~~~~~~m~~ 656 (819)
|++++|...|+++.+
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 555555555555554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.09 E-value=2e-05 Score=72.87 Aligned_cols=130 Identities=10% Similarity=0.090 Sum_probs=100.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHhcCCH--H
Q 039792 538 TQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDM-YAKCGSL--E 614 (819)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 614 (819)
...|++++|+..|++..... +.+...+..+...+...|+++.|...++.+.+..+. +...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 45678888888888877652 446678888888889999999999999998887654 67777888888 7788998 9
Q ss_pred HHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 039792 615 DAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLS 671 (819)
Q Consensus 615 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 671 (819)
+|...|++.. +.+...|..+...|...|++++|+..|++..+ +.|+......++.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD--LNSPRINRTQLVE 156 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCCccHHHHHH
Confidence 9999998766 44677888899999999999999999999998 6777654444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-05 Score=67.77 Aligned_cols=95 Identities=14% Similarity=-0.035 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLL 708 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l 708 (819)
.|..+...+.+.|++++|+..|++.++ ..|+. ..|..+..++...|++++|+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~------------------------ 72 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAII------------------------ 72 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHH------------------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHH------------------------
Confidence 345556667777777777777777777 56654 456666667777776665554
Q ss_pred hcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 709 GRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 709 ~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.++++++++|+++..+..|+.+|...|++++|...+++..+.
T Consensus 73 ------------~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 73 ------------ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp ------------HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456777888999999999999999999999999999887653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.04 E-value=7.8e-05 Score=73.14 Aligned_cols=130 Identities=12% Similarity=-0.028 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC--CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHc
Q 039792 602 ALIDMYAKCGSLEDAYETFGSTT--WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSACSH 675 (819)
Q Consensus 602 ~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~ 675 (819)
.+..++...|++++|.++|+... .|+......+...+.+.|++++|+..|++... .|+. ..+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCcccHHHHHHHHHHHHHH
Confidence 34455555666666666666554 33222444444455566666666666654332 1211 245555556666
Q ss_pred cCCHHHHHHHHHHHHhcCCccCch-----HHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHH
Q 039792 676 AGLIEDGLDHFQSMAGFGIEPGME-----HYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLL 739 (819)
Q Consensus 676 ~g~~~~a~~~~~~m~~~g~~p~~~-----~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l 739 (819)
.|++++|+..|++.......|... ..+..+..+| +.+.|...++++++.+|+ +.++..|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG----r~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG----NESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 666666666666555322213210 1111222222 445555555555555555 4444444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.2e-05 Score=70.46 Aligned_cols=108 Identities=14% Similarity=0.048 Sum_probs=63.6
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHH
Q 039792 628 VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVV 705 (819)
Q Consensus 628 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li 705 (819)
...|..+...|...|++++|++.|++.++ +.|+. ..|..+..+|...|++++|+..|++.++.. |+ ...|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 34566677777777777777777777777 55643 456667777777777777777666655411 21 22233333
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCCchhHHHHH
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLS 740 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~ 740 (819)
..+.+.+ +.+.|...++++++++|+++..|...+
T Consensus 87 ~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMA-DYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHcc-CHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3332221 455555556666666666666554444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.03 E-value=4.2e-05 Score=63.95 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=67.0
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHH
Q 039792 628 VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVS 706 (819)
Q Consensus 628 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 706 (819)
...|..+...+...|++++|+..|++..+ ..|+. ..+..+..++...|++++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~---------------------- 61 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVD---------------------- 61 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHH----------------------
Confidence 34555566666666666666666666665 34432 345555555555555555544
Q ss_pred HhhcccchhhhHHHHHHHHHccCCC--CchhHHHHHHHHHhC-CCchHHHHHHHHHHhCC
Q 039792 707 LLGRNVWNVELGRYAAEMAISIDPM--DSGSYTLLSNTFACN-SMWADAKQVRKKMDLDG 763 (819)
Q Consensus 707 ~l~r~~w~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~g 763 (819)
.+++++++.|+ ++..+..++.+|... |++++|.+.+++..+..
T Consensus 62 --------------~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 62 --------------CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp --------------HHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred --------------HHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 45566667788 888999999999999 99999999999886543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.4e-05 Score=73.02 Aligned_cols=128 Identities=11% Similarity=0.053 Sum_probs=69.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CC-C----h
Q 039792 564 TFAALITAASNLGSLKHGQQFHNHLIK----LGLD-FDSFITSALIDMYAKCGSLEDAYETFGSTT-----WK-D----V 628 (819)
Q Consensus 564 t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~-~----~ 628 (819)
++..+...+...|+++.|...++...+ .+.. ....++..+...|...|++++|.+.+++.. .+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 344444444444444444444444433 1111 123344555555666666666655555432 11 2 2
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCC--chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGL---EPN--YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..+..+...+...|++++|...+++..+..- .|. ..++..+...+...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2455666667777777777777777654210 111 12356667778888888888888887776
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.01 E-value=6.2e-05 Score=65.89 Aligned_cols=99 Identities=9% Similarity=-0.046 Sum_probs=72.8
Q ss_pred CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHH
Q 039792 626 KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASV 704 (819)
Q Consensus 626 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~l 704 (819)
.+...|..+...+...|++++|+..|++.++ ..|+. ..+..+..++...|++++|...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~------------------- 65 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALAD------------------- 65 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH-------------------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHH-------------------
Confidence 3455666777777777777777777777776 45543 4566666666666666665544
Q ss_pred HHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 705 VSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 705 i~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
++++++++|+++..|..++.+|...|++++|...+++..+.
T Consensus 66 -----------------~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 66 -----------------CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp -----------------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55666778888999999999999999999999999988764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.00 E-value=5.4e-06 Score=83.46 Aligned_cols=189 Identities=8% Similarity=-0.089 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039792 497 FAGSALIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAAS 573 (819)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 573 (819)
..+..+...+.+.|++++|...|++..+ | +...|..+...|.+.|++++|+..+++..+.. +-+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3445556666677777777777766543 2 45566667777777777777777777776542 234566667777777
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHH
Q 039792 574 NLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFRE 653 (819)
Q Consensus 574 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 653 (819)
..|++++|...+..+.+..+. +...+...+....+.++.......-......+......+. .+ ..|+.++|++.+++
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~l-~~~~~~~A~~~~~~ 160 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLT-RL-IAAERERELEECQR 160 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHH-HH-HHHHHHHHHTTTSG
T ss_pred HcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HH-HHHHHHHHHHHHHh
Confidence 777788777777777654321 1111111111111111111112222222233433333332 22 25777888888777
Q ss_pred HHHcCCCCCchhHH-HHHHHHHcc-CCHHHHHHHHHHHHh
Q 039792 654 MIIEGLEPNYITFV-GVLSACSHA-GLIEDGLDHFQSMAG 691 (819)
Q Consensus 654 m~~~g~~p~~~t~~-~ll~a~~~~-g~~~~a~~~~~~m~~ 691 (819)
..+ ..|+..... .+...+... +.+++|.++|.++.+
T Consensus 161 al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 161 NHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp GGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 766 567654332 332333333 567778888877765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.99 E-value=4.1e-05 Score=67.68 Aligned_cols=101 Identities=12% Similarity=-0.053 Sum_probs=83.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-------c------hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-------Y------ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP 696 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p 696 (819)
.|......+.+.|++++|+..|++.++ +.|+ . ..|..+..++.+.|++++|+..+++.++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 355566777888999999999999988 6676 2 2788888899999999999888766542
Q ss_pred CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhH----HHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 697 GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSY----TLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 697 ~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.+.+..+++|+++..| +..+.+|...|++++|...+++..+
T Consensus 86 ------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 86 ------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp ------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3566678899999999 9999999999999999999998876
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.6e-05 Score=65.11 Aligned_cols=90 Identities=11% Similarity=0.027 Sum_probs=37.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCC
Q 039792 566 AALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHG 642 (819)
Q Consensus 566 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 642 (819)
..+...+...|+++.|...++.+.+..+. +...+..+...|...|++++|.+.|++.. +.+...|..+...|...|
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 98 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMK 98 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHh
Confidence 33333334444444444444443333221 23333334444444444444444443322 223334444444455555
Q ss_pred ChHHHHHHHHHHHH
Q 039792 643 EPMKALLLFREMII 656 (819)
Q Consensus 643 ~~~~A~~~~~~m~~ 656 (819)
++++|++.|++..+
T Consensus 99 ~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 99 DYTKAMDVYQKALD 112 (133)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.96 E-value=6.2e-05 Score=77.83 Aligned_cols=124 Identities=10% Similarity=-0.083 Sum_probs=86.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--------------hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCC
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDFD--------------SFITSALIDMYAKCGSLEDAYETFGSTT---WKD 627 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~ 627 (819)
+..+...+.+.|+++.|...++..++..+... ...+..+..+|.+.|++++|.+.|++.. +.+
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 229 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN 229 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 33344444444445555544444444433211 4677778888888888888888887765 446
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHH-HHHHHHHH
Q 039792 628 VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDG-LDHFQSMA 690 (819)
Q Consensus 628 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a-~~~~~~m~ 690 (819)
...|..+..+|...|++++|+..|++.++ +.|+. ..+..+..++...|+.++| ...++.|.
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888889999999999999999988 67764 5677788888888888888 45666664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=6.8e-05 Score=64.67 Aligned_cols=110 Identities=11% Similarity=0.104 Sum_probs=54.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhC
Q 039792 565 FAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHH 641 (819)
Q Consensus 565 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 641 (819)
+..+...+...|+++.|...++.+.+..+. +...+..+...|...|++++|.+.+++.. +.+...|..+...|...
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence 334444444555555555555555444322 34444455555555555555555554433 22344555555555666
Q ss_pred CChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccC
Q 039792 642 GEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAG 677 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 677 (819)
|++++|.+.|++..+ ..|+. ..+..+..++...|
T Consensus 94 ~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 94 NKHVEAVAYYKKALE--LDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHh
Confidence 666666666666655 34432 34444444444444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.94 E-value=4.5e-05 Score=65.92 Aligned_cols=90 Identities=8% Similarity=0.039 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--------hhHHH
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--------ITFVG 668 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ 668 (819)
+.-+...|.+.|++++|.+.|++.. +.+...|+.+..+|...|++++|++.|++.++ +.|+. .+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHHHHH
Confidence 3445556666666666666665543 33455666666666666666666666666655 33321 23555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh
Q 039792 669 VLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 669 ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+..++...|++++|++.|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566666666666666666554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.92 E-value=8.4e-05 Score=65.67 Aligned_cols=92 Identities=15% Similarity=0.032 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHH
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSAC 673 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 673 (819)
..+..+...+.+.|++++|.+.|++.. +.+...|..+..+|...|++++|+..|++.++ +.|+. ..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL--MDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence 344556666777777777777777654 44666777788888888888888888888887 56754 5677777788
Q ss_pred HccCCHHHHHHHHHHHHh
Q 039792 674 SHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 674 ~~~g~~~~a~~~~~~m~~ 691 (819)
...|++++|...|+...+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888887776
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00011 Score=66.93 Aligned_cols=94 Identities=9% Similarity=-0.006 Sum_probs=70.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLS 671 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 671 (819)
+...+..+...|.+.|++++|.+.|++.. +.+...|..+..+|...|++++|+..|++.++ +.|+. ..|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34456666677777777777777777655 34666777788888888888888888888887 56764 56777778
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 039792 672 ACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 672 a~~~~g~~~~a~~~~~~m~~ 691 (819)
++...|++++|...|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 88888888888888888877
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00011 Score=63.35 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHc
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSH 675 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 675 (819)
+..+...+.+.|++++|.+.|++.. +.+...|..+..+|...|++++|+..|++.++ +.|+. ..|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHH
Confidence 3344444555555555555554433 23444555555555555555555555555555 44543 345555555555
Q ss_pred cCCHHHHHHHHHHHHh
Q 039792 676 AGLIEDGLDHFQSMAG 691 (819)
Q Consensus 676 ~g~~~~a~~~~~~m~~ 691 (819)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 6666666665555554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.89 E-value=6.9e-05 Score=73.54 Aligned_cols=137 Identities=10% Similarity=-0.037 Sum_probs=100.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCh----HhHHHHHHHHHhC
Q 039792 567 ALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW-KDV----ACWNSMICTNAHH 641 (819)
Q Consensus 567 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~li~~~~~~ 641 (819)
.+...+...|++++|.++++.+...++. +. ....+...+.+.|++++|+..|+.... ++. ..+..+..++...
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 3455567778888888888777665432 23 556666788999999999999987663 322 3677788899999
Q ss_pred CChHHHHHHHHHHHHcCCCCCc--hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHH
Q 039792 642 GEPMKALLLFREMIIEGLEPNY--ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSL 707 (819)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 707 (819)
|++++|+..|++.......|.. ........++.+.|+.++|...|+++... .|+...+..|.+.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL~~~ 250 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAALKDP 250 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHhCC
Confidence 9999999999999853333652 35677788899999999999999999883 2444444455443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00013 Score=66.09 Aligned_cols=96 Identities=6% Similarity=-0.012 Sum_probs=65.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCC----------Cc-hhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIE------GLEP----------NY-ITFVGVLSACSHAGLIEDGLDHFQSMAGF 692 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p----------~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 692 (819)
.|......+.+.|++++|+..|++.++. .-.| .. ..|..+..+|.+.|+++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~------------ 80 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLH------------ 80 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHH------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHH------------
Confidence 4556666777777777777777777662 0012 21 23444444555555544
Q ss_pred CCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 693 GIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 693 g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
.|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 81 ------------------------~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 81 ------------------------EAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp ------------------------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 445556677778899999999999999999999999999887765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00017 Score=63.88 Aligned_cols=112 Identities=9% Similarity=-0.009 Sum_probs=61.9
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN----YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHY 701 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y 701 (819)
+...|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|...+++..+. .| +...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 445566666666666666666666666665 4555 344555566666666666666666665542 12 12222
Q ss_pred HHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 702 ASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 702 ~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
..+...+.+.+ +.+.|...++++++++|++...+..+..+.
T Consensus 103 ~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLG-RLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 22333332221 555566666666666666666665555543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0017 Score=65.58 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCC-hHHHHHHHH
Q 039792 579 KHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG--SLEDAYETFGSTT---WKDVACWNSMICTNAHHGE-PMKALLLFR 652 (819)
Q Consensus 579 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 652 (819)
+++..+++.++...++ +..+|+.-...+.+.| .++++.++++++. ++|..+|+.-.......|. .+++++.++
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3444444444444433 4444444444444444 2455555554444 3344445444444444444 345555555
Q ss_pred HHHH
Q 039792 653 EMII 656 (819)
Q Consensus 653 ~m~~ 656 (819)
++++
T Consensus 170 ~~I~ 173 (331)
T 3dss_A 170 SLIT 173 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0012 Score=66.79 Aligned_cols=229 Identities=11% Similarity=0.071 Sum_probs=148.7
Q ss_pred hcCCh-HHHHHHHHhcCCCCe---eehhhhHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039792 508 KCFSN-KDARLVFDEMNQRDI---VVWNAMLLGYTQQLE----------NEEAIKLYLELLLSQQRPNEFTFAALITAAS 573 (819)
Q Consensus 508 ~~g~~-~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 573 (819)
+.|.+ ++|..+++.+..-|+ ..|+.--..+...+. +++++.+++.+.... +-+..+|..-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 34443 467777777765333 344443333322222 577888888887642 346667776666666
Q ss_pred ccC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhcCC---CCChHhHHHHHHHHHhC------
Q 039792 574 NLG--SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGS-LEDAYETFGSTT---WKDVACWNSMICTNAHH------ 641 (819)
Q Consensus 574 ~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~~~~------ 641 (819)
..+ .++++..+++.+.+..+. +...|+.-.-.+.+.|. ++++.+.++++. ..|..+|+.....+...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence 666 478888899998888766 77777777777777887 588888888766 55777887765555443
Q ss_pred --------CChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHcc-----------CCHHHHHHHHHHHHhcCCccCc-hH
Q 039792 642 --------GEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHA-----------GLIEDGLDHFQSMAGFGIEPGM-EH 700 (819)
Q Consensus 642 --------g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~-----------g~~~~a~~~~~~m~~~g~~p~~-~~ 700 (819)
+.++++++.+++.+. +.|+. ..|+.+-..+.+. +.++++++.++++.+ +.|+. -.
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w~ 274 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPENKWC 274 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred ccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcccchH
Confidence 457889999999988 78865 4566555555554 457888888888876 23443 11
Q ss_pred HHHHHHH---hhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 701 YASVVSL---LGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 701 y~~li~~---l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
+-.++.. +...+ ..+.....+.++.++||...+.|..|..-+
T Consensus 275 l~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 275 LLTIILLMRALDPLL-YEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHCTTT-THHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc-cHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 2122211 11111 344566788888888998888887776554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00035 Score=77.38 Aligned_cols=172 Identities=10% Similarity=-0.008 Sum_probs=116.4
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHhcCC---CCChHhHHHHHHHHHhCC-
Q 039792 577 SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGS----------LEDAYETFGSTT---WKDVACWNSMICTNAHHG- 642 (819)
Q Consensus 577 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g- 642 (819)
.-++|...++.+++.+++ +..+|+.--..+.+.|+ ++++.+.++.+. +++..+|+.-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 345666777777776655 55556655555555555 777777777665 556667777777777777
Q ss_pred -ChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccC-CHHHHHHHHHHHHh-cCCccCchHHHHH-HHHhhcc------
Q 039792 643 -EPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAG-LIEDGLDHFQSMAG-FGIEPGMEHYASV-VSLLGRN------ 711 (819)
Q Consensus 643 -~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g-~~~~a~~~~~~m~~-~g~~p~~~~y~~l-i~~l~r~------ 711 (819)
+++++++.++++.+ ..|. ..+|+.-..++.+.| .+++++++++++++ ..-..+.-+|... +..+.+.
T Consensus 123 ~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 55888888888887 5664 456777777777777 77888888877766 2212222222221 1222100
Q ss_pred ----cchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchH
Q 039792 712 ----VWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWAD 751 (819)
Q Consensus 712 ----~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 751 (819)
...++.+...++++++++|+|..+|..+.+++...|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 0156788889999999999999999999999999998666
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00024 Score=59.79 Aligned_cols=108 Identities=15% Similarity=0.090 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHH
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSL 707 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~ 707 (819)
.|..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|...+++..+.. | +...+..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 444555555556666666666666555 3343 2344555555555555555555555444311 1 11222222222
Q ss_pred hhcccchhhhHHHHHHHHHccCCCCchhHHHHHHH
Q 039792 708 LGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 742 (819)
+...+ +.+.|...++++++++|+++..+..++.+
T Consensus 82 ~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLN-RFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTT-CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 22211 34444444445555555555444444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0001 Score=61.54 Aligned_cols=94 Identities=7% Similarity=-0.094 Sum_probs=71.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--c-hhHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN--Y-ITFVGV 669 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~-~t~~~l 669 (819)
+...+..+...|.+.|++++|...|++.. +.+...|..+...+...|++++|++.|++..+ ..|+ . ..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHHHH
Confidence 34455667777777788888887777654 44566778888888888888888888888887 5665 3 567777
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHh
Q 039792 670 LSACSHA-GLIEDGLDHFQSMAG 691 (819)
Q Consensus 670 l~a~~~~-g~~~~a~~~~~~m~~ 691 (819)
..++... |++++|.+.++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 7888888 888888888888876
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00033 Score=58.91 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-chhHHHHHHHHHcc
Q 039792 601 SALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN-YITFVGVLSACSHA 676 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 676 (819)
..+...+...|++++|.+.|++.. +.+...|..+...|...|++++|...+++..+ ..|+ ...+..+..++...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHH
Confidence 333444444444444444444332 22334444444444445555555555555544 2333 23344444455555
Q ss_pred CCHHHHHHHHHHHHh
Q 039792 677 GLIEDGLDHFQSMAG 691 (819)
Q Consensus 677 g~~~~a~~~~~~m~~ 691 (819)
|++++|.+.+++..+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555554443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00011 Score=79.65 Aligned_cols=127 Identities=8% Similarity=0.010 Sum_probs=74.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----------------hhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----------------ITFVGVLSACSHAGLIEDGLDHFQSMAGFG 693 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 693 (819)
.|..+...|.+.|++++|+..|++.++ +.|+. ..|..+..+|.+.|++++|+..+++.++..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 444455555555555555555555555 33432 445556666666666666666666665521
Q ss_pred Ccc-CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHH-HHHHHHh
Q 039792 694 IEP-GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQ-VRKKMDL 761 (819)
Q Consensus 694 ~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~~ 761 (819)
| +...|..+..+|... .+.+.|...++++++++|++..++..++.+|...|++++|.+ .+++|..
T Consensus 348 --p~~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 348 --SANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp --TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred --CccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 222333333333322 266677777888889999999999999999999999998874 4565644
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00015 Score=62.51 Aligned_cols=99 Identities=9% Similarity=0.006 Sum_probs=57.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C----C----hHhHHHHH
Q 039792 566 AALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW--K----D----VACWNSMI 635 (819)
Q Consensus 566 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li 635 (819)
..+-..+.+.|++++|...|+..++..+. +...+..+..+|.+.|++++|.+.|++... | + ..+|..+.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 33444444555555555555555554433 444555555555555555555555554331 1 1 12566677
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCchhHH
Q 039792 636 CTNAHHGEPMKALLLFREMIIEGLEPNYITFV 667 (819)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 667 (819)
..|...|++++|++.|++.++ ..||..+..
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 788888999999999998887 566654433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.76 E-value=7.8e-05 Score=67.15 Aligned_cols=135 Identities=11% Similarity=-0.002 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCh----HhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTTW-----KDV----ACWNSMICTNAHHGEPMKALLLFREMIIEGL-EPN---- 662 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---- 662 (819)
..++..+...|...|++++|.+.+++... ++. .++..+...|...|++++|++.+++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34566677777777777777777766541 121 3566667777777777777777777654210 011
Q ss_pred chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHH
Q 039792 663 YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNT 742 (819)
Q Consensus 663 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 742 (819)
...+..+...+...|++++|.+.+++..+..... .-.+..+..+..++.+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------------~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL------------------------------KDRIGEGRACWSLGNA 138 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc------------------------------cchHhHHHHHHHHHHH
Confidence 2345566666777777777777776654310000 0001124568889999
Q ss_pred HHhCCCchHHHHHHHHHHh
Q 039792 743 FACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 743 y~~~g~~~~a~~~~~~m~~ 761 (819)
|...|++++|.+.+++..+
T Consensus 139 ~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00024 Score=61.99 Aligned_cols=93 Identities=9% Similarity=-0.019 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHH
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSA 672 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 672 (819)
...+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|+..+++.++ +.|+. ..+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHHHHHHHHH
Confidence 3444445555555555555555554433 22344555555556666666666666666655 34543 345555556
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 039792 673 CSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~ 691 (819)
+...|++++|...|++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.75 E-value=8.3e-05 Score=80.88 Aligned_cols=116 Identities=10% Similarity=0.051 Sum_probs=68.6
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchh
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNV 715 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~ 715 (819)
+.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|.+.+++..+. .|+ ...|..+..+|.+.+ +.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g-~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALG-KF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHT-CH
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC-CH
Confidence 3445566666666666655 44543 45555555666666666666666665552 122 223333333333222 56
Q ss_pred hhHHHHHHHHHccCCCCchhHHHHHHH--HHhCCCchHHHHHHHH
Q 039792 716 ELGRYAAEMAISIDPMDSGSYTLLSNT--FACNSMWADAKQVRKK 758 (819)
Q Consensus 716 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~~ 758 (819)
+.|...++++++++|+++..+..++.+ |...|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 666667777888899999999999888 8889999999999873
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.008 Score=61.01 Aligned_cols=169 Identities=13% Similarity=0.009 Sum_probs=79.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhH-HHHHHHHhhccC-chHhHHHHHHHHHHhCCccchhhHHHHHHHHHhc-C-ChHH
Q 039792 439 EEKLSEALDLFHEMRVGFVPPGLLT-FVSLLGLSSSVF-SLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKC-F-SNKD 514 (819)
Q Consensus 439 ~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~-g-~~~~ 514 (819)
.+..++|+++++++... .|+..| ++.--..+...+ .++++..+.+.+.....+ +..+++.-...+.+. + +.++
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHH
Confidence 33445566666555442 233222 222222222223 244444444444443332 333444433333333 4 5566
Q ss_pred HHHHHHhcCCC---CeeehhhhHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------
Q 039792 515 ARLVFDEMNQR---DIVVWNAMLLGYTQQLENE--------EAIKLYLELLLSQQRPNEFTFAALITAASNLGS------ 577 (819)
Q Consensus 515 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~------ 577 (819)
+.++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 66666666553 3334443333333333333 6666666666542 3355555555555555554
Q ss_pred -hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 039792 578 -LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGS 612 (819)
Q Consensus 578 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 612 (819)
++++.+....++...+. |...|+.+-..+.+.|+
T Consensus 223 ~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 45555566666655544 55555555555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00015 Score=62.39 Aligned_cols=27 Identities=4% Similarity=0.101 Sum_probs=14.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
.|..+...|...|++++|.+.|++..+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444555555555555555555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00014 Score=62.07 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHc
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSH 675 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 675 (819)
+..+...+.+.|++++|...|++.. +.+...|..+...+...|++++|+..|++.++ +.|+. ..+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 4445667778888888888887765 44677888888888888889999999988888 67865 567778888888
Q ss_pred cCCHHHHHHHHHHHHh
Q 039792 676 AGLIEDGLDHFQSMAG 691 (819)
Q Consensus 676 ~g~~~~a~~~~~~m~~ 691 (819)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888887765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00037 Score=59.87 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
+..+...|...|++++|...|++.. +.+...|..+...|...|++++|+..+++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3444444444555555554444432 22334444444444444444444444444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00089 Score=57.50 Aligned_cols=86 Identities=16% Similarity=0.036 Sum_probs=36.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCC--CC-Ch---HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHH
Q 039792 604 IDMYAKCGSLEDAYETFGSTT--WK-DV---ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY----ITFVGVLSAC 673 (819)
Q Consensus 604 i~~~~~~g~~~~A~~~~~~~~--~~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~ 673 (819)
...+.+.|++++|.+.|++.. .| +. ..|..+...|...|++++|+..|++..+ ..|+. ..+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS--RYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHH
Confidence 334444444554444444433 11 11 2344444444444444444444444444 23332 2233344444
Q ss_pred HccCCHHHHHHHHHHHHh
Q 039792 674 SHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 674 ~~~g~~~~a~~~~~~m~~ 691 (819)
...|++++|...|+++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.61 E-value=9.9e-05 Score=76.30 Aligned_cols=95 Identities=9% Similarity=0.015 Sum_probs=29.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 665 TFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 665 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
.|..+..+|.+.|++++|+..+++.++. .| +...|..+..+|...+ +.+.|...++++++++|+++.++..|+.+.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g-~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELG-QMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4455555555555555555555555541 12 1223333333333221 556666666777777777777777777773
Q ss_pred -HhCCCchHHHHHHHHHHhC
Q 039792 744 -ACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 744 -~~~g~~~~a~~~~~~m~~~ 762 (819)
...+..+++.+++++|.+.
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 3456677777777776543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00036 Score=65.62 Aligned_cols=90 Identities=14% Similarity=-0.010 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHH
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSAC 673 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 673 (819)
..+..+..+|.+.|++++|...+++.. +.+...|..+..+|...|++++|++.|++.++ +.|+. ..+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHH
Confidence 455556666666666666666666544 33455666666677777777777777777766 45644 3455555555
Q ss_pred HccCCHHHHH-HHHHHH
Q 039792 674 SHAGLIEDGL-DHFQSM 689 (819)
Q Consensus 674 ~~~g~~~~a~-~~~~~m 689 (819)
...|+.+++. ..+..|
T Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 5555555544 333333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00095 Score=58.85 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
.|..+...|...|++++|.+.|++..+
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444444444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00022 Score=74.60 Aligned_cols=90 Identities=12% Similarity=0.056 Sum_probs=59.5
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHH
Q 039792 628 VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVS 706 (819)
Q Consensus 628 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 706 (819)
...|..+..+|.+.|++++|++.+++.++ +.|+. ..+..+..+|...|++++|...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~--------------------- 329 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALAD--------------------- 329 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHH---------------------
Confidence 34566666666666666777766666665 55543 3555555566666655555444
Q ss_pred HhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHH
Q 039792 707 LLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQV 755 (819)
Q Consensus 707 ~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 755 (819)
++++++++|++...+..++.++...++.+++.+.
T Consensus 330 ---------------l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 330 ---------------LKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp ---------------HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---------------HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677788888888888888888877776553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=7.1e-05 Score=65.94 Aligned_cols=96 Identities=11% Similarity=-0.083 Sum_probs=78.1
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhh
Q 039792 639 AHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVEL 717 (819)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~ 717 (819)
.+-+.+++|++.+++.++ +.|+. ..|..+..++...|+++.+...++ .++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~e 64 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQE 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHHH
Confidence 344668889999999988 77865 577778888888777665554332 3467
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhCC-----------CchHHHHHHHHHHhC
Q 039792 718 GRYAAEMAISIDPMDSGSYTLLSNTFACNS-----------MWADAKQVRKKMDLD 762 (819)
Q Consensus 718 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-----------~~~~a~~~~~~m~~~ 762 (819)
|...++++++++|+++.+|..++++|...| ++++|.+.+++..+.
T Consensus 65 Ai~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 65 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 888999999999999999999999999875 899999999998764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00058 Score=61.21 Aligned_cols=93 Identities=17% Similarity=0.040 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC-----CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-ch
Q 039792 599 ITSALIDMYAKCGSLEDAYETFGSTT-----WKD----VACWNSMICTNAHHGEPMKALLLFREMIIE----GLEPN-YI 664 (819)
Q Consensus 599 ~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 664 (819)
++..+...|...|++++|.+.+++.. .++ ...+..+...+...|++++|.+.+++..+. +..+. ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 45555666666666666666665533 111 335667777888888888888888887652 11111 24
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 665 TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 665 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 577788889999999999999988775
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.47 E-value=8.7e-05 Score=62.99 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=54.5
Q ss_pred hCCChHHHHHHHHHHHHcCC-CCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhh
Q 039792 640 HHGEPMKALLLFREMIIEGL-EPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVEL 717 (819)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~ 717 (819)
..|++++|+..|++.++.+. .|+. ..+..+..++...|++++|...|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~------------------------------ 51 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLA------------------------------ 51 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH------------------------------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH------------------------------
Confidence 35677778888887776221 2433 456666677777777776666654
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 718 GRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 718 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 52 ------~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 52 ------NGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp ------HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556677777777777777777777777777776654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0015 Score=70.16 Aligned_cols=158 Identities=12% Similarity=0.062 Sum_probs=88.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-Cc
Q 039792 534 LLGYTQQLENEEAIKLYLELLLSQQRPN----------------EFTFAALITAASNLGSLKHGQQFHNHLIKLGLD-FD 596 (819)
Q Consensus 534 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 596 (819)
...+.+.|++++|++.|.+..+...... ...+..+...|...|++++|.+.+..+.+.-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3457788999999999988887532211 123556666777777777777777666542111 11
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--
Q 039792 597 S----FITSALIDMYAKCGSLEDAYETFGSTT-----WKD----VACWNSMICTNAHHGEPMKALLLFREMIIEGLEP-- 661 (819)
Q Consensus 597 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-- 661 (819)
. .+.+.+...+...|+.++|.++++... ..+ ..++..|...|...|++++|..++++....-...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 122333334445566666666665432 111 2345556666666667766666666665421111
Q ss_pred --Cc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 662 --NY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 662 --~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.. .++..++..|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 11 2455556666666666666666666543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00023 Score=60.23 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=54.8
Q ss_pred CCHHHHHHHHhcCCCC------ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHH
Q 039792 611 GSLEDAYETFGSTTWK------DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGL 683 (819)
Q Consensus 611 g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 683 (819)
|++++|.+.|++.... +...|..+...|...|++++|++.|++.++ ..|+. ..+..+..++...|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK--QFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4444555555443321 234566677777777777888888888777 56654 46677777777888888888
Q ss_pred HHHHHHHh-cCCccCchHH
Q 039792 684 DHFQSMAG-FGIEPGMEHY 701 (819)
Q Consensus 684 ~~~~~m~~-~g~~p~~~~y 701 (819)
..+++... ..-.|+...|
T Consensus 82 ~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHH
Confidence 77777766 4434443333
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00048 Score=60.83 Aligned_cols=60 Identities=12% Similarity=0.054 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCC-------CCCc-hhH----HHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGL-------EPNY-ITF----VGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~-~t~----~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.|+.+..++...|++++|+..+++.++ + .|+. ..| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALH--YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 788888899999999999999999888 6 8976 467 8888999999999999998888765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0022 Score=55.01 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=49.8
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-C---hHhHHHHHHHHHhCC
Q 039792 572 ASNLGSLKHGQQFHNHLIKLGLDFDS---FITSALIDMYAKCGSLEDAYETFGSTT--WK-D---VACWNSMICTNAHHG 642 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~---~~~~~~li~~~~~~g 642 (819)
+...|++++|...++.+.+..+. +. ..+..+...|.+.|++++|...|++.. .| + ...+..+..+|...|
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 33444444444444444443322 12 344445555555666666665555543 22 2 345566667777777
Q ss_pred ChHHHHHHHHHHHHcCCCCCch
Q 039792 643 EPMKALLLFREMIIEGLEPNYI 664 (819)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~~~ 664 (819)
++++|...|+++.+ ..|+..
T Consensus 91 ~~~~A~~~~~~~~~--~~p~~~ 110 (129)
T 2xev_A 91 KNTEAQQTLQQVAT--QYPGSD 110 (129)
T ss_dssp CHHHHHHHHHHHHH--HSTTSH
T ss_pred CHHHHHHHHHHHHH--HCCCCh
Confidence 88888888888777 456543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0014 Score=67.42 Aligned_cols=431 Identities=12% Similarity=0.080 Sum_probs=249.0
Q ss_pred ChhhhhHHHHHHHcCCChhhHHHHHhccCCCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Q 039792 86 DTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACT 165 (819)
Q Consensus 86 ~~~~~~~ll~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 165 (819)
.+.+|..|-.++.+.+.+.+|.+.| +...|...|..+|.+..+.|.+++-+..++-. ++. .-+...=+.++-+++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~Ma-Rk~--~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMA-RKK--ARESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTT-STT--CCSTTTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHH-HHH--hcccccHHHHHHHHH
Confidence 4578999999999999999998887 44566777889999999999999998887643 443 345566778999999
Q ss_pred cCCCCCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCC------------------------C
Q 039792 166 QLGGGGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLM------------------------V 221 (819)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~------------------------~ 221 (819)
+.+++.+-.++.. .||+.-...+-+-+...|.++.|.-+|..+. .
T Consensus 128 k~~rL~elEefl~-----------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 128 KTNRLAELEEFIN-----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp TSCSSSTTTSTTS-----------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred hhCcHHHHHHHHc-----------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998875433321 3666666677777788888888888876551 3
Q ss_pred CCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCC-CchhHHHHH
Q 039792 222 KTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMG-MDVSVINVL 300 (819)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l 300 (819)
.++.+|..+-.+|+..+.+.-|.-.--.+.- .......++..|-..|.+++-..+++.-+ |.+ ....+++-|
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTEL 269 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTEL 269 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHH
Confidence 4778999999999999999887655444432 12233456777888999999888888765 333 356788888
Q ss_pred HHHhHhCCChHHHHHHHhccc----CC-------CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 039792 301 MDFYSKCGRVKMARRLFDEIE----VK-------NIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTS 369 (819)
Q Consensus 301 i~~~~~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 369 (819)
.-.|+|- +.++..+-++..- -| ....|.-++-.|.+-.+++.|... |.++ .|+...-......
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdi 343 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDI 343 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTT
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHH
Confidence 8888876 3344444333322 12 234577777777777777765432 2221 1111111122222
Q ss_pred hcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhc-------------CCCCcchH-HHHHHH
Q 039792 370 CGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVM-------------ADRNVVSY-NAMIEG 435 (819)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------------~~~~~~~~-~~li~~ 435 (819)
..+..+.+.--+..... +.-.+...+-|+..+...=|...+.++|.+. ...|...- .++-..
T Consensus 344 i~KVaN~EiyYKAi~FY----L~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L 419 (624)
T 3lvg_A 344 ITKVANVELYYRAIQFY----LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNL 419 (624)
T ss_dssp GGGCSCSHHHHHHHHHH----TTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHH
T ss_pred HHHcchHHHHHHHHHHH----HHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHH
Confidence 23333333222222111 2223333445555544444444555555443 23333332 234444
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHH
Q 039792 436 YSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDA 515 (819)
Q Consensus 436 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 515 (819)
|....+++. +..-+..|-+-..+..|.++- +. .-...-..-...|.+.++++++
T Consensus 420 ~IEEEDy~~-------------------LR~SId~ydNFD~i~LA~rLE----kH---eL~eFRrIAA~LYkkn~rw~qs 473 (624)
T 3lvg_A 420 FITEEDYQA-------------------LRTSIDAYDNFDNISLAQRLE----KH---ELIEFRRIAAYLFKGNNRWKQS 473 (624)
T ss_dssp HHHTTCCHH-------------------HHHTTSSCCCSCTTHHHHHHH----TC---SSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhhHHH-------------------HHHHHHHhccccHHHHHHHHh----hC---chHHHHHHHHHHHHhcccHHHH
Confidence 555544432 111122222222333332221 11 1112222334456666667666
Q ss_pred HHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 039792 516 RLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQ 583 (819)
Q Consensus 516 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 583 (819)
.++.++ -..|.--|...+..|+.+-|.++++-+.+.| +...|...+-.|...=+++-+.+
T Consensus 474 i~l~Kk-----DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 474 VELCKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp SSCSST-----TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHH
T ss_pred HHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHH
Confidence 554432 1233334445556677777777777776654 33456666666666655555444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0036 Score=67.08 Aligned_cols=189 Identities=8% Similarity=-0.088 Sum_probs=137.5
Q ss_pred HHHHHhcCChHHHHHHHHhcCCC-----Ce---------------eehhhhHHHHHhcCCHHHHHHHHHHHHHC-CCCCC
Q 039792 503 IDAYSKCFSNKDARLVFDEMNQR-----DI---------------VVWNAMLLGYTQQLENEEAIKLYLELLLS-QQRPN 561 (819)
Q Consensus 503 i~~~~~~g~~~~A~~~~~~~~~~-----~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~ 561 (819)
...+.+.|++++|.+.|..+.+. +. .++..+...|...|++++|.+.+.+.... +-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45678899999999999987531 11 12567888999999999999999987642 11222
Q ss_pred HH---HHHHHHH-HHhccCChHHHHHHHHHHHH----hCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcCC--------
Q 039792 562 EF---TFAALIT-AASNLGSLKHGQQFHNHLIK----LGLDF-DSFITSALIDMYAKCGSLEDAYETFGSTT-------- 624 (819)
Q Consensus 562 ~~---t~~~ll~-~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------- 624 (819)
.. .....+. .+...|+++.+..++..... .+..+ -..++..|...|...|++++|..++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 2223333 33567899999999988764 22222 24577889999999999999999987643
Q ss_pred CC-ChHhHHHHHHHHHhCCChHHHHHHHHHHHHc--CC-CCC---chhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 625 WK-DVACWNSMICTNAHHGEPMKALLLFREMIIE--GL-EPN---YITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 625 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+ ....|..++..|...|++++|..++++.... .+ .|. ...+..+...+...|++++|...|....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 2347888999999999999999999988652 12 121 13466677788999999999999988876
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0012 Score=59.68 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 599 ITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 599 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
.+..+..+|.+.|++++|...+++.. +.+...|..+..+|...|++++|+..|++.++
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 44444444444555554444444333 22334444444455555555555555555444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0015 Score=70.48 Aligned_cols=85 Identities=12% Similarity=-0.072 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHH
Q 039792 597 SFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSA 672 (819)
Q Consensus 597 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 672 (819)
...|..+..+|.+.|++++|...|++.. +.+...|..+..+|...|++++|+..|++.++ +.|+. ..+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3556666667777777777777776654 34556677777777777777777777777776 66654 456666666
Q ss_pred HHccCCHHHHH
Q 039792 673 CSHAGLIEDGL 683 (819)
Q Consensus 673 ~~~~g~~~~a~ 683 (819)
+.+.|+.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00069 Score=56.31 Aligned_cols=93 Identities=10% Similarity=-0.036 Sum_probs=65.9
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVV 705 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li 705 (819)
+...|..+...+...|++++|++.|++.++ +.|+. ..+..+..++...|++++|.+.+++..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------------- 65 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL--------------- 65 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------------
Confidence 345677778888888888888888888887 56754 567777778888888777776665554
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCC------chhHHHHHHHHHhCCCchHHHHHHH
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMD------SGSYTLLSNTFACNSMWADAKQVRK 757 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~ 757 (819)
+++|++ ...+..++.+|...|++++|.+.++
T Consensus 66 ---------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 66 ---------------------RYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp ---------------------TSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred ---------------------HhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 445555 5566777777777777776655443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00069 Score=69.92 Aligned_cols=91 Identities=11% Similarity=-0.010 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHH-H
Q 039792 599 ITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSA-C 673 (819)
Q Consensus 599 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a-~ 673 (819)
.+..+..+|.+.|++++|...+++.. +.+...|..+..+|...|++++|+..|++.++ +.|+.. .+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH
Confidence 44445555555555555555555443 23444555555566666666666666665554 445432 23333322 2
Q ss_pred HccCCHHHHHHHHHHHHh
Q 039792 674 SHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 674 ~~~g~~~~a~~~~~~m~~ 691 (819)
...+..+++...|..|..
T Consensus 310 ~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 233445555555555543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00052 Score=74.08 Aligned_cols=108 Identities=15% Similarity=0.007 Sum_probs=75.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH---cCCCCC---c-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHH
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMII---EGLEPN---Y-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYA 702 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~---~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~ 702 (819)
+++.|...|...|++++|+.++++.++ .-+.|+ . .+++.|...|...|++++|..++++..+
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~----------- 421 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA----------- 421 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------
Confidence 567777777777777777777777653 113343 2 4688999999999999999999887653
Q ss_pred HHHHHhhcccchhhhHHHHHHHHHccCCCCc---hhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCC
Q 039792 703 SVVSLLGRNVWNVELGRYAAEMAISIDPMDS---GSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEA 768 (819)
Q Consensus 703 ~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~ 768 (819)
..++. +.|++| ..+..|...+.+.|++++|..+++++++.-.+..|
T Consensus 422 ------------------i~~~~--lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 422 ------------------ILLVT--HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp ------------------HHHHH--TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred ------------------HHHHH--hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11111 223333 34567888889999999999999999886543333
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0018 Score=67.54 Aligned_cols=87 Identities=9% Similarity=-0.088 Sum_probs=70.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLS 671 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 671 (819)
+...+..+..+|.+.|++++|.+.+++.. +.+...|..+..+|...|++++|++.|++..+ +.|+. ..+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45677888889999999999999998765 34667888999999999999999999999998 67865 45666666
Q ss_pred HHHccCCHHHHHH
Q 039792 672 ACSHAGLIEDGLD 684 (819)
Q Consensus 672 a~~~~g~~~~a~~ 684 (819)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0014 Score=55.07 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHH
Q 039792 646 KALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEM 724 (819)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~ 724 (819)
+|++.|++..+ ..|+. ..+..+..++...|++++|...| ++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~------------------------------------~~ 44 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHL------------------------------------RA 44 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHH------------------------------------HH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHH------------------------------------HH
Confidence 46667777766 56654 45666666777777766666554 45
Q ss_pred HHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 725 AISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 725 ~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+++++|+++..|..++.+|...|++++|...+++..+
T Consensus 45 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 45 ALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5567788888999999999999999999999988765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0026 Score=50.39 Aligned_cols=57 Identities=16% Similarity=0.344 Sum_probs=32.5
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQ 687 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 687 (819)
..|..+...+...|++++|+..|++..+ ..|+. ..+..+..++...|++++|...++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3455556666666666666666666665 34533 345555555555555555554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0021 Score=51.41 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGL 764 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 764 (819)
..+.+...++++++++|+++.++..++++++..|+|++|...++++.+...
T Consensus 24 ~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 24 MTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 368899999999999999999999999999999999999999999987544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0038 Score=54.43 Aligned_cols=107 Identities=13% Similarity=0.049 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHH
Q 039792 542 ENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK----CGSLEDAY 617 (819)
Q Consensus 542 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 617 (819)
++++|++.|++..+.| .|+.. +-..+...+.++.|...++...+.| ++..+..|..+|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666555 22222 3333444445555555555555543 34444445555544 44444444
Q ss_pred HHHhcCC-CCChHhHHHHHHHHHh----CCChHHHHHHHHHHHH
Q 039792 618 ETFGSTT-WKDVACWNSMICTNAH----HGEPMKALLLFREMII 656 (819)
Q Consensus 618 ~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 656 (819)
+.|++.. ..+..++..|...|.. .++.++|++.|++..+
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 4444433 2333344444444444 3444444444444444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0025 Score=51.90 Aligned_cols=64 Identities=19% Similarity=0.308 Sum_probs=52.8
Q ss_pred CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 626 KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 626 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+...|..+...|...|++++|+..|++.++ +.|+. ..|..+..+|...|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566788888888888999999999999888 66764 5688888888899999999998888876
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00055 Score=70.42 Aligned_cols=433 Identities=12% Similarity=0.086 Sum_probs=255.3
Q ss_pred CCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhh
Q 039792 191 RDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACS 270 (819)
Q Consensus 191 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 270 (819)
..+.+|+.|-.++.+.|++.+|..-|= ...|+..|..+|....+.|.+++-+..+...++..- ++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 356788899999999999988886553 456778889999999999999999998876665532 3444567888899
Q ss_pred ccCChhhHHHHHHHHHHhCCCCchhHHHHHHHHhHhCCChHHHHHHHhccc------------------------CCCcc
Q 039792 271 MLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIE------------------------VKNII 326 (819)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~ 326 (819)
+.+++.+-.+++. .|+..-...+.+-+...|.++.|.-+|..+. ..++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 8888766544322 3455555566677777788888877777664 23667
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCC-CCChhHHhHHhhhh
Q 039792 327 SWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANI-ESDNFVKNSLVDMY 405 (819)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~ 405 (819)
+|--+-.+|+..+.+.-|.-.--.+. +.|| ....++..|...|.+++...+++... |+ .....+|+-|.-.|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHH
Confidence 89999999999998887765544443 2222 34456677888888888888877655 33 23566788888888
Q ss_pred hcCCCHHHHHHHHHhcCC----C-------CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 039792 406 AKCDSLTEARKVFDVMAD----R-------NVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSV 474 (819)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~----~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 474 (819)
+|-. .++..+-++.... | ....|.-++-.|++..+++.|... |.+. +|+.+.-........+.
T Consensus 274 sKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KV 347 (624)
T 3lvg_A 274 SKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKV 347 (624)
T ss_dssp HSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGC
T ss_pred HhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHc
Confidence 8763 3443333332221 2 345688888888887777766532 1111 01111111111111222
Q ss_pred CchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHh-------------cCCCCeeehh-hhHHHHHhc
Q 039792 475 FSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDE-------------MNQRDIVVWN-AMLLGYTQQ 540 (819)
Q Consensus 475 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------------~~~~~~~~~~-~li~~~~~~ 540 (819)
.+.+---+..... +.-.+...+-|+..+...=+...+.++|.+ ....|...-| ++-..|...
T Consensus 348 aN~EiyYKAi~FY----L~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEE 423 (624)
T 3lvg_A 348 ANVELYYRAIQFY----LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITE 423 (624)
T ss_dssp SCSHHHHHHHHHH----TTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHH----HHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 2222111111111 111222233344443333333344444443 3222222211 122222222
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 039792 541 LENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETF 620 (819)
Q Consensus 541 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 620 (819)
. |-.++..-|..|-.-..+..|.++ .+.. -...-..-...|.+.++|+++.++.
T Consensus 424 E-------------------Dy~~LR~SId~ydNFD~i~LA~rL----EkHe---L~eFRrIAA~LYkkn~rw~qsi~l~ 477 (624)
T 3lvg_A 424 E-------------------DYQALRTSIDAYDNFDNISLAQRL----EKHE---LIEFRRIAAYLFKGNNRWKQSVELC 477 (624)
T ss_dssp T-------------------CCHHHHHTTSSCCCSCTTHHHHHH----HTCS---SHHHHHHHHHHHHTTCHHHHHSSCS
T ss_pred h-------------------hHHHHHHHHHHhccccHHHHHHHH----hhCc---hHHHHHHHHHHHHhcccHHHHHHHH
Confidence 2 333333344444444444444433 2211 2223333456788899999998776
Q ss_pred hcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHH
Q 039792 621 GSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDH 685 (819)
Q Consensus 621 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 685 (819)
++=. .|.-.|...+.+|+.+-|.++++-.++.| +...|...+-.|...=+.|-+.++
T Consensus 478 KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 478 KKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp STTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred Hhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 5433 12223445567899999999999998855 567799999999988888887766
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.001 Score=58.63 Aligned_cols=34 Identities=9% Similarity=-0.117 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 039792 578 LKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGS 612 (819)
Q Consensus 578 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 612 (819)
+++|...++..++..+. +...+..+..++...|+
T Consensus 18 feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~ 51 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQ 51 (158)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcc
Confidence 44444444444444433 44444444444444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00028 Score=58.77 Aligned_cols=86 Identities=9% Similarity=-0.007 Sum_probs=59.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-------hh
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-------IT 665 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t 665 (819)
+...+..+...+.+.|++++|.+.|++.. +.+...|..+..+|...|++++|++.|++.++ +.|+. ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHHH
Confidence 44556667777777888888888777655 44667788888888888999999999998887 67764 23
Q ss_pred HHHHHHHHHccCCHHHHH
Q 039792 666 FVGVLSACSHAGLIEDGL 683 (819)
Q Consensus 666 ~~~ll~a~~~~g~~~~a~ 683 (819)
+..+..++...|+.++|.
T Consensus 81 ~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHhHhhhH
Confidence 444444444444444433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0035 Score=66.52 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=92.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHc---CCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHH
Q 039792 635 ICTNAHHGEPMKALLLFREMIIE---GLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSL 707 (819)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 707 (819)
+..+.+.|++++|+.++++.++. -+.|+. .+++.|..+|...|++++|..++++.++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~---------------- 357 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME---------------- 357 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----------------
Confidence 44566778899999999988752 234443 4688899999999999999999887754
Q ss_pred hhcccchhhhHHHHHHHHH-ccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCC
Q 039792 708 LGRNVWNVELGRYAAEMAI-SIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARD 786 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~ 786 (819)
..++.+ .-.|+-+..|..|+.+|...|++++|..++++..+.- .+ +=.
T Consensus 358 -------------i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~-~~-----------------~lG 406 (429)
T 3qwp_A 358 -------------PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM-RV-----------------THG 406 (429)
T ss_dssp -------------HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH-----------------HTC
T ss_pred -------------hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HH-----------------hcC
Confidence 111111 1123345678899999999999999999999887521 11 113
Q ss_pred CCCCChHHHHHHHHHHHHHHH
Q 039792 787 KSHHAADLTYSILDNLILHIK 807 (819)
Q Consensus 787 ~~~~~~~~i~~~l~~l~~~~~ 807 (819)
.+||...+++..|+....+|+
T Consensus 407 ~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 407 REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHh
Confidence 579999999999998888876
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0019 Score=54.14 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=46.0
Q ss_pred CChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 626 KDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 626 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+...|..+...|...|++++|+..|++.++ +.|+. ..|..+..++...|++++|...|++..+
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556677777777777777777777777776 55654 4667777777777888888877777765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0075 Score=52.52 Aligned_cols=112 Identities=9% Similarity=-0.053 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCChHhHHHHHHHHHh----CCChHHHHHH
Q 039792 576 GSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-WKDVACWNSMICTNAH----HGEPMKALLL 650 (819)
Q Consensus 576 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~ 650 (819)
+++++|..+++...+.|.. +. . |..+|...+.+++|.+.|++.. ..+..++..|...|.. .++.++|++.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-FG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-TH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-hh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 4678899999999998833 32 3 8888888889999999998876 5678888999988988 7899999999
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCc
Q 039792 651 FREMIIEGLEPNYITFVGVLSACSH----AGLIEDGLDHFQSMAGFGIE 695 (819)
Q Consensus 651 ~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~ 695 (819)
|++..+.| +...+..|...|.. .++.++|.+.|++..+.|..
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999854 45677778888887 88999999999998886643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.036 Score=61.19 Aligned_cols=166 Identities=10% Similarity=0.025 Sum_probs=115.2
Q ss_pred ChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 039792 511 SNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLE----------NEEAIKLYLELLLSQQRPNEFTFAALITAASNLG- 576 (819)
Q Consensus 511 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g- 576 (819)
..++|.+.++.+.. | +...|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34566777776654 2 33456655555555555 788888888887653 335667777777777778
Q ss_pred -ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhcCC---CCChHhHHHHHHHHHhC----------
Q 039792 577 -SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCG-SLEDAYETFGSTT---WKDVACWNSMICTNAHH---------- 641 (819)
Q Consensus 577 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~---------- 641 (819)
+++++...++.+.+..+. +...|+.-...+.+.| ..+++.+.++++. ..|..+|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 568888888888887766 7777777777777778 7888888888777 34566777766665552
Q ss_pred ----CChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHH
Q 039792 642 ----GEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIE 680 (819)
Q Consensus 642 ----g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 680 (819)
+.++++++.+++.+. +.|+. ..|..+-..+.+.+..+
T Consensus 202 ~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCS
T ss_pred cccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCcc
Confidence 446788888888887 67754 56777777777666533
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0031 Score=66.78 Aligned_cols=115 Identities=13% Similarity=-0.011 Sum_probs=81.8
Q ss_pred hCCChHHHHHHHHHHHH---cCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhccc
Q 039792 640 HHGEPMKALLLFREMII---EGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNV 712 (819)
Q Consensus 640 ~~g~~~~A~~~~~~m~~---~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~ 712 (819)
..|++++|+.++++.++ .-+.|+. .+++.|..+|...|++++|..++++.++ ..-..||.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~-----------i~~~~lG~-- 376 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK-----------PYSKHYPV-- 376 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHHHSCS--
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-----------HHHHHcCC--
Confidence 34678888888887765 2234543 4688999999999999999999988754 01111221
Q ss_pred chhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCCCh
Q 039792 713 WNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLMKEAGRSWIEVNNEVHAFVARDKSHHAA 792 (819)
Q Consensus 713 w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~g~s~i~~~~~~~~f~~~~~~~~~~ 792 (819)
-.|+-+..|+.|+.+|...|++++|..++++..+.-.+ .=..+||.+
T Consensus 377 ---------------~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~ 423 (433)
T 3qww_A 377 ---------------YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYI 423 (433)
T ss_dssp ---------------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHH
Confidence 12334567899999999999999999999988752111 113579999
Q ss_pred HHHHHHHH
Q 039792 793 DLTYSILD 800 (819)
Q Consensus 793 ~~i~~~l~ 800 (819)
.++...|+
T Consensus 424 ~~l~~~l~ 431 (433)
T 3qww_A 424 SEIKQEIE 431 (433)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98887765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.012 Score=63.37 Aligned_cols=120 Identities=9% Similarity=-0.059 Sum_probs=77.7
Q ss_pred HhccCChHHHHHHHHHHHHh-----CCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCC----hHhHHH
Q 039792 572 ASNLGSLKHGQQFHNHLIKL-----GLD-F-DSFITSALIDMYAKCGSLEDAYETFGSTT-------WKD----VACWNS 633 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~----~~~~~~ 633 (819)
+...|++++|+.++++.++. |.. | ...+++.|...|...|++++|..++++.. .++ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666655431 111 1 23456667777777777777777665533 222 236777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH---cCCCCCc----hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 634 MICTNAHHGEPMKALLLFREMII---EGLEPNY----ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
|...|...|++++|+.++++..+ .-+-||. .+...+-.++...|++++|..++..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887653 2234553 2355666678888999999999999876
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0065 Score=47.94 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=56.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHH
Q 039792 596 DSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLS 671 (819)
Q Consensus 596 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 671 (819)
+...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ +.|+. ..+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCHHHHHHHHH
Confidence 34556667777777888888888777654 34566788888888888999999999999887 56754 45555555
Q ss_pred HHHcc
Q 039792 672 ACSHA 676 (819)
Q Consensus 672 a~~~~ 676 (819)
++...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0049 Score=50.09 Aligned_cols=48 Identities=19% Similarity=0.066 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.|...++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 22 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 22 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444445667778899999999999999999999999999998765
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.046 Score=47.47 Aligned_cols=80 Identities=10% Similarity=-0.038 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHHHccC---CHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHH
Q 039792 645 MKALLLFREMIIEGLEPNYITFVGVLSACSHAG---LIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYA 721 (819)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~ 721 (819)
..+.+.|.+..+.|. ++..+...+..++.+++ ++++|+.+|+..
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~l-------------------------------- 61 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEEL-------------------------------- 61 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--------------------------------
Confidence 344555555555442 55566666666777766 344555555544
Q ss_pred HHHHHccC-C-CCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 722 AEMAISID-P-MDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 722 ~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
++.+ | ++...++.|+-.|++.|++++|.+.++.+.+
T Consensus 62 ----l~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 62 ----LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp ----HHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred ----HhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4444 4 3355666666666777777777777666654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.094 Score=53.13 Aligned_cols=134 Identities=11% Similarity=0.003 Sum_probs=82.7
Q ss_pred CCChHhHHHHHHHHH--hCC---ChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHc---cC-----CHHHHHHHHHHHH
Q 039792 625 WKDVACWNSMICTNA--HHG---EPMKALLLFREMIIEGLEPNY-ITFVGVLSACSH---AG-----LIEDGLDHFQSMA 690 (819)
Q Consensus 625 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~---~g-----~~~~a~~~~~~m~ 690 (819)
+.+...|...+.+.. ..+ +..+|..+|++.++ +.|+. ..|..+..+|.. .+ ......+.+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 345556665554433 222 35788889999988 78875 345544444421 11 1111112222222
Q ss_pred h-cCCccCchHHHHHHHHh-hcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 039792 691 G-FGIEPGMEHYASVVSLL-GRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDG 763 (819)
Q Consensus 691 ~-~g~~p~~~~y~~li~~l-~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 763 (819)
. .....+...|..+.-.+ .+ ++.+.|...++++++++| +...|..++.+|.-.|++++|.+.+++.....
T Consensus 269 a~~~~~~~a~~~~alal~~l~~--gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVK--GKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hcccCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 2 22233445555443222 22 289999999999999997 46788999999999999999999998876643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.047 Score=55.35 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=53.8
Q ss_pred CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHH
Q 039792 625 WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYA 702 (819)
Q Consensus 625 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~ 702 (819)
..+...|..+...+...|++++|+..+++++.. .|+...|..+...+.-.|++++|.+.+++... +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 556677777777777778888888888888884 47766676777778888888888888877765 335544443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.15 Score=59.54 Aligned_cols=115 Identities=14% Similarity=0.081 Sum_probs=78.6
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 039792 504 DAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQ 583 (819)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 583 (819)
......|++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+....
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 44567788888888877664 456888889999999999999999888753 3344455555677776666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHH
Q 039792 584 FHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFRE 653 (819)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 653 (819)
+.+.....|. ++.-..+|.+.|++++|.+++ .+.+++++|..+-++
T Consensus 729 ~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 729 LAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 6655555442 233455577788888887654 445666677666554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.013 Score=47.24 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=37.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCc-h-hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 635 ICTNAHHGEPMKALLLFREMIIEGLEPNY-I-TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
...+...|++++|++.|++.++ ..|+. . .+..+..++...|++++|.+.|++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455666777777777777776 45643 4 566666677777777777777776665
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.15 Score=49.52 Aligned_cols=128 Identities=12% Similarity=0.010 Sum_probs=77.8
Q ss_pred hcCCHHHHHHHHhcCCCCCh--HhHHHHHHH-HHhC--CC------hHHHHHHHHHHHHcCCCCC---chhHHHHHHHHH
Q 039792 609 KCGSLEDAYETFGSTTWKDV--ACWNSMICT-NAHH--GE------PMKALLLFREMIIEGLEPN---YITFVGVLSACS 674 (819)
Q Consensus 609 ~~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~ 674 (819)
+.|+..+-.+.+.+..+.|+ ..|..++.+ +... |+ ..+|..++++.++ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 34444555555666654443 367666653 3332 32 5677788888888 7887 346777776665
Q ss_pred ccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCC-chhHHHHHHHHHhC-CCchHH
Q 039792 675 HAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMD-SGSYTLLSNTFACN-SMWADA 752 (819)
Q Consensus 675 ~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~a 752 (819)
.. |.. +-| +.+.|++.+++++++.|+. ..+++.++..|+.. |++++|
T Consensus 211 ~v-------------------Pp~--------~gG----d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 211 AA-------------------PES--------FGG----GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HS-------------------CTT--------TTC----CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred hC-------------------CCc--------cCC----CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 53 100 001 5566666677777777753 77777777777764 777777
Q ss_pred HHHHHHHHhCCCcCCCc
Q 039792 753 KQVRKKMDLDGLMKEAG 769 (819)
Q Consensus 753 ~~~~~~m~~~g~~~~~g 769 (819)
.+.+++.........|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 77777777655554454
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.37 Score=56.14 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=44.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChH
Q 039792 566 AALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPM 645 (819)
Q Consensus 566 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 645 (819)
..++..+.+.|..+.|.++.+ +. ..-.+....+|++++|.++.+.+ .+...|..|...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHH
Confidence 455555556666666655442 11 01133445567777777766555 34456777777777777777
Q ss_pred HHHHHHHHHH
Q 039792 646 KALLLFREMI 655 (819)
Q Consensus 646 ~A~~~~~~m~ 655 (819)
.|.+.|.++.
T Consensus 699 ~A~~~y~~~~ 708 (814)
T 3mkq_A 699 LAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcc
Confidence 7777776654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.021 Score=45.94 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=44.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChH-hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT---WKDVA-CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI 664 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~---~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (819)
....+.+.|++++|.+.|++.. +.+.. .|..+...|...|++++|++.|++.++ +.|+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~ 69 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE--LNPDSP 69 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcH
Confidence 3456667778888888777655 33556 778888888888888888989988888 667654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.064 Score=56.79 Aligned_cols=62 Identities=10% Similarity=0.063 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCC---c-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIE---GLEPN---Y-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~---~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+++.|...|...|++++|+.++++.++- -+.|+ . .+++.|...|...|++++|..++++..+
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5667777777777777777777776531 12233 2 4688888899999999999998888765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.05 Score=57.52 Aligned_cols=62 Identities=8% Similarity=-0.086 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH---cCCCC---Cc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMII---EGLEP---NY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p---~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+++.|...|...|++++|+.++++.++ .-+.| +. .+++.|...|...|++++|..++++..+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 566666677777777777777776653 11233 33 4688899999999999999999888764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.27 Score=38.84 Aligned_cols=64 Identities=11% Similarity=0.040 Sum_probs=48.8
Q ss_pred CChHhHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 626 KDVACWNSMICTNAHHGE---PMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 626 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+|...|..+..++...++ .++|..++++.++ +.|+.+ ....+...+...|++++|+.+|+++.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666666666655544 6888888888888 788764 566777788889999999999988887
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.44 Score=39.70 Aligned_cols=48 Identities=8% Similarity=-0.064 Sum_probs=31.7
Q ss_pred hhhhHHHHHHHHHccC-C-CCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISID-P-MDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+...|..+++.++.-+ | ......+.|+-.|++.|+|++|.+..+.+.+
T Consensus 53 d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 53 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555555555544 3 3446677788888888888888888887765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.49 E-value=2.1 Score=38.03 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=72.9
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 039792 504 DAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQ 583 (819)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 583 (819)
+....+|+++.|.++.+++ .+...|..|.......|+++-|.+.|++..+ +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4445677777777777665 3456778888888888888888777776543 3334444445566666555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHH
Q 039792 584 FHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREM 654 (819)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 654 (819)
+-+.....|- ++.-...+.-.|+++++.++|.+...... -+-....+|-.+.|.++.+++
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence 5554444431 23333445556677777666655443211 111112345555566655544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.16 E-value=2.9 Score=34.90 Aligned_cols=138 Identities=9% Similarity=0.028 Sum_probs=78.6
Q ss_pred HhcCCHHHHHHHHhcCC-CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHH
Q 039792 608 AKCGSLEDAYETFGSTT-WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDH 685 (819)
Q Consensus 608 ~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 685 (819)
.-.|.+++..++..+.. ..+..-+|=.|.-....-+.+-..+.++..=+ -+..+. .-...++.+|.+.|...
T Consensus 18 ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk-iFDis~C~NlKrVi~C~~~~n~~s----- 91 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS-YFDLDKCQNLKSVVECGVINNTLN----- 91 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG-GSCGGGCSCTHHHHHHHHHTTCCC-----
T ss_pred HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh-hcCcHhhhcHHHHHHHHHHhcchH-----
Confidence 34566677777666655 23333444444444444444444444444322 122111 12445555555554332
Q ss_pred HHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCc
Q 039792 686 FQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLM 765 (819)
Q Consensus 686 ~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 765 (819)
++...-++.+-.++ ..+.-......++.-+|.+|...+.++++|.+.|+..+|.+++++.-++|++
T Consensus 92 -------------e~vd~ALd~lv~~~-KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 -------------EHVNKALDILVIQG-KRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp -------------HHHHHHHHHHHHTT-CHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred -------------HHHHHHHHHHHHhc-cHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 23333333333221 3344444555544556778999999999999999999999999999999986
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.62 E-value=0.65 Score=40.25 Aligned_cols=31 Identities=26% Similarity=0.168 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEPNY 663 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (819)
+-.|.-+|.+.|++++|.+.++.+++ +.|+.
T Consensus 74 lY~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 74 VFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 34455566666777777777777776 66654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.07 E-value=3.7 Score=34.33 Aligned_cols=85 Identities=16% Similarity=0.022 Sum_probs=58.9
Q ss_pred hcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 039792 508 KCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNH 587 (819)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 587 (819)
.||++......+-.+.. +....+.-++.+...|.-++-.+++.++.. ..+|++.....+..+|.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34444444444444332 223344556777888888888888888644 3578888888888899999999999999888
Q ss_pred HHHhCCC
Q 039792 588 LIKLGLD 594 (819)
Q Consensus 588 ~~~~~~~ 594 (819)
+.+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 8888865
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.65 E-value=5.9 Score=35.19 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=65.4
Q ss_pred hhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHH
Q 039792 405 YAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIH 484 (819)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 484 (819)
...+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+....+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 44678888888887776 4566888888888888888888888888642 334444455556655555444
Q ss_pred HHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhcC
Q 039792 485 GLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMN 523 (819)
Q Consensus 485 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 523 (819)
+.....| -++.....+.-.|+++++.++|.+..
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4444333 13444445555666666666665543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.21 E-value=4.4 Score=34.35 Aligned_cols=48 Identities=10% Similarity=-0.093 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHHccCCC-CchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPM-DSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+...|..+++.++.-+|. .....+.|+-.|++.|+|++|.+..+.+.+
T Consensus 57 di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 57 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455556666666665553 345666667777777777777777766654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.04 E-value=1 Score=36.24 Aligned_cols=60 Identities=7% Similarity=-0.068 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcC-----CCC-CchhHHHHHHHHHccCCHHHHHHHHHHHH
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEG-----LEP-NYITFVGVLSACSHAGLIEDGLDHFQSMA 690 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 690 (819)
+-.|...+...|+++.|...|++..+.- ..+ ....+..|..++.+.|++++|..++++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4456666777777777777777766521 011 12345566666666666666665554444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.71 E-value=1.6 Score=49.01 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
+.+.|...++++....|.+-.+|..|+.+|...|+|+.|.-.+.-+
T Consensus 352 ~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 352 DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999998866
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=90.69 E-value=1.8 Score=34.79 Aligned_cols=66 Identities=15% Similarity=0.070 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC----------CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchh
Q 039792 598 FITSALIDMYAKCGSLEDAYETFGSTT----------WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYIT 665 (819)
Q Consensus 598 ~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 665 (819)
.-+..|...+.+.|+++.|...|+... ......+..|..+|.+.|++++|+..+++..+ +.|+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~ 81 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHH
Confidence 334445555555666666655554322 12345677788888888888888888888887 7887643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.84 E-value=1.1 Score=50.37 Aligned_cols=51 Identities=16% Similarity=0.021 Sum_probs=42.7
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHH
Q 039792 637 TNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSM 689 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 689 (819)
-+...|+++-|+++.++... ..|+. .+|..|..+|.+.|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35567888889998888888 78876 58888888999999999998888887
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=89.10 E-value=1.9 Score=41.81 Aligned_cols=64 Identities=14% Similarity=0.013 Sum_probs=42.9
Q ss_pred hHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCC--chhHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCc
Q 039792 630 CWNSMICTNAH-----HGEPMKALLLFREMIIEGLEPN--YITFVGVLSACSH-AGLIEDGLDHFQSMAGFGIE 695 (819)
Q Consensus 630 ~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~g~~ 695 (819)
.|..|...|.+ -|+.++|.+.|++.++ +.|+ ..++......++. .|+.+++.+++++.+.....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 45556666666 3777777777777777 6774 3456666666666 47777777777777774444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=88.77 E-value=3.3 Score=34.45 Aligned_cols=92 Identities=12% Similarity=-0.002 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHH---HHHHHHHHHhcCCcc---CchHHHHHHHHhhcccchhhh
Q 039792 644 PMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIED---GLDHFQSMAGFGIEP---GMEHYASVVSLLGRNVWNVEL 717 (819)
Q Consensus 644 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~g~~p---~~~~y~~li~~l~r~~w~~~~ 717 (819)
...+.+-|.+....|. |+..+-..+..++.++...++ |+.+++.....+ .| ....|..-+..|.- + +.+.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ykl-g-~Y~~ 92 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRL-K-EYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHT-T-CHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHh-h-hHHH
Confidence 3444555555555443 666677777777888776665 777777776532 12 11222222222221 1 7888
Q ss_pred HHHHHHHHHccCCCCchhHHHH
Q 039792 718 GRYAAEMAISIDPMDSGSYTLL 739 (819)
Q Consensus 718 a~~~~~~~~~~~p~~~~~~~~l 739 (819)
|.+..+.+++.+|+|..+..+.
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHH
Confidence 8888888888888876655544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.88 E-value=22 Score=35.01 Aligned_cols=169 Identities=9% Similarity=0.025 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 039792 497 FAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKL----YLELLLSQQRPNEFTFAALITAA 572 (819)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~ 572 (819)
..|.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34567777888899999999887652 3456777887666654 45555678999999888888887
Q ss_pred hccCChH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhC---C
Q 039792 573 SNLGSLK-HGQQFHNHLIK----LG--LDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHH---G 642 (819)
Q Consensus 573 ~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g 642 (819)
.....-+ .-..+.+.+++ .| ..-|+.....+...|.+.|++.+|+..|-.....|...+-.|+.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 6644222 23445555553 22 2247888999999999999999999877533322344444444333322 3
Q ss_pred ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 643 EPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
...++-- ..-..++. |.-.|++..|..+|+...+
T Consensus 183 ~~~e~dl--------------f~~RaVL~-yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAE--------------FFSRLVFN-YLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHH--------------HHHHHHHH-HHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHH--------------HHHHHHHH-HHHhcCHHHHHHHHHHHHH
Confidence 2222111 11222333 4557899999999887764
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.72 E-value=26 Score=34.54 Aligned_cols=167 Identities=11% Similarity=0.162 Sum_probs=95.8
Q ss_pred HHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHH----HHHHHHCCCCCCcchHHHHHHHhc
Q 039792 296 VINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKL----FTEMTRSGWKPDDFACSSVLTSCG 371 (819)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 371 (819)
.|.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .+.+.+.++++|......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3445666688888888888876432 2335566776665554 455556688888887777776665
Q ss_pred CCcc-----hhhHHHHHHHHHHcCC--CCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc---CC
Q 039792 372 SVEA-----LEQGRQVHAYSFKANI--ESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSKE---EK 441 (819)
Q Consensus 372 ~~~~-----~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g~ 441 (819)
.... .+-.........+.|- .-|+.....+...|.+.|++.+|+.-|-.-...|...+..++.-+.+. |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 4322 1222233333334432 236778888889999999999999877632222344444444433333 44
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHH
Q 039792 442 LSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLII 488 (819)
Q Consensus 442 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 488 (819)
..++--..- ..++ -+...+++..|..++....
T Consensus 184 ~~e~dlf~~--------------RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAEFFS--------------RLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHH--------------HHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cchHHHHHH--------------HHHH-HHHHhcCHHHHHHHHHHHH
Confidence 333222111 1222 2334566777776666554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=85.66 E-value=5.1 Score=34.29 Aligned_cols=110 Identities=14% Similarity=0.036 Sum_probs=64.0
Q ss_pred CCChHhHHHHHHHHHhCCCh------HHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC
Q 039792 625 WKDVACWNSMICTNAHHGEP------MKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG 697 (819)
Q Consensus 625 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 697 (819)
+.|..+|-..+.-..+.|+. ++..++|++... .++|+. ..|...+..+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIr---------------------- 66 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVR---------------------- 66 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHH----------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHH----------------------
Confidence 55777777777777777777 777777777766 355542 122222221111
Q ss_pred chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCc
Q 039792 698 MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLM 765 (819)
Q Consensus 698 ~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 765 (819)
|+.+. .+. |.+.++..++.++++...-+..|...+.--.+.|+...|.+++.+....+.+
T Consensus 67 ---YA~~~-ei~----D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 67 ---FAELK-AIQ----EPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp ---HHHHH-HHH----CGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ---HHHHH-Hhc----CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 11110 000 5666666666666665555566666777667777777777777776665543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.35 E-value=1.9 Score=36.03 Aligned_cols=48 Identities=10% Similarity=-0.093 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHHccCCC-CchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPM-DSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+...|..+++.++.-+|. ....++.|+-.|++.|++++|.+..+.+.+
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 555666666666666663 356777788888888888888888887764
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=82.33 E-value=41 Score=33.34 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=72.2
Q ss_pred HHHHHHHHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHH----HHHHHCCCCCCcchHHHHHHHhc
Q 039792 296 VINVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLF----TEMTRSGWKPDDFACSSVLTSCG 371 (819)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 371 (819)
+|.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +.+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344556668888888888887643 223455667766555544 55556688888888777777765
Q ss_pred CCcchh-hHHHHHH----HHHHcC--CCCChhHHhHHhhhhhcCCCHHHHHHHHH
Q 039792 372 SVEALE-QGRQVHA----YSFKAN--IESDNFVKNSLVDMYAKCDSLTEARKVFD 419 (819)
Q Consensus 372 ~~~~~~-~a~~~~~----~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (819)
....-+ .-..+.+ .-.+.| ..-|+.....+...|.+.+++.+|+.-|-
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 544322 1122333 333444 23366777788888999999999988874
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.56 E-value=55 Score=34.26 Aligned_cols=224 Identities=11% Similarity=0.032 Sum_probs=111.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-----hHHHHHHHHhhccCchHhHHHHHHHHHHh---C-Cccc--hhh
Q 039792 430 NAMIEGYSKEEKLSEALDLFHEMRVGFVPPGL-----LTFVSLLGLSSSVFSLESSKQIHGLIIKY---G-VFLD--VFA 498 (819)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~---g-~~~~--~~~ 498 (819)
..|...|...|++.+|.+++.++...-...+. ..+...++.|...+++..+..+...+... . ..|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45677888889999999999888542111111 23444556666666666666666554321 1 1111 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 039792 499 GSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSL 578 (819)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 578 (819)
+...+..+...+++.+|.+.|.++ ...+...++.......+..+ +.+..-.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~-----------~~~~~~~~d~~~~~~~L~~~---------------v~~~iLa~~~ 274 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI-----------YQTDAIKSDEAKWKPVLSHI---------------VYFLVLSPYG 274 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHSCHHHHHHHHHHH---------------HHHHHHSSCS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH-----------HhcccccCCHHHHHHHHHHH---------------HHHHHhCCCC
Confidence 333444444444444444433321 22222333322222222211 1111111111
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHHHhcCCCCChH---------hHHHHHHHHHhCCChHHH
Q 039792 579 KHGQQFHNHLIKLGLDFDSFITSALIDMYAKC--GSLEDAYETFGSTTWKDVA---------CWNSMICTNAHHGEPMKA 647 (819)
Q Consensus 579 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~A 647 (819)
..-..+.....+..--++...+..++.+|... .+++.+.+.|.....++.. .|+.|......|+
T Consensus 275 ~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehn----- 349 (445)
T 4b4t_P 275 NLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHN----- 349 (445)
T ss_dssp STTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHH-----
T ss_pred chHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHH-----
Confidence 11122222222322234677888899998764 4678888888776644332 2444443332221
Q ss_pred HHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 039792 648 LLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAGFG 693 (819)
Q Consensus 648 ~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 693 (819)
+..+ .+| +.+++..+...+.- ..+++...+.+|+..|
T Consensus 350 ---l~~i----~k~Ys~I~l~~la~lL~l--~~~evE~~ls~mI~~g 387 (445)
T 4b4t_P 350 ---LRVI----SEYYSRITLLRLNELLDL--TESQTETYISDLVNQG 387 (445)
T ss_dssp ---HHHH----HHHEEEEEHHHHHHHHTS--CHHHHHHHHHHHHHHT
T ss_pred ---HHHH----HHHhceeeHHHHHHHhCc--CHHHHHHHHHHHHHCC
Confidence 1111 123 45666666665542 5788888888888744
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.32 E-value=6.3 Score=40.74 Aligned_cols=67 Identities=13% Similarity=0.246 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHccCCHHHHHHHHHHHHh-----cCCccCch
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEP-NYITFVGVLSACSHAGLIEDGLDHFQSMAG-----FGIEPGME 699 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-----~g~~p~~~ 699 (819)
...++..+...|++++|+..++.+.. ..| +...+..++.++.+.|+..+|.+.|+...+ .|+.|+..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34566777888999999988888887 667 556888999999999999999988888644 58888753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 819 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.83 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.8 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.34 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.26 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.83 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.8 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.66 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.66 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.6 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.58 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.57 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.44 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.4 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.22 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.12 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.1 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.06 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.99 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.92 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.91 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.89 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.88 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.8 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.75 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.74 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.73 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.73 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.68 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.49 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.46 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.45 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.43 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.42 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.4 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.4 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.38 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.21 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.1 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.09 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.07 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.05 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.04 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.04 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.92 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.69 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.37 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.06 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.04 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.78 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.52 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.3 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.68 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.74 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 89.95 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.9 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=6.5e-18 Score=178.36 Aligned_cols=240 Identities=13% Similarity=0.105 Sum_probs=174.5
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 039792 502 LIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSL 578 (819)
Q Consensus 502 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 578 (819)
........+....+...+..... | +...+..+...+...|++++|...+++..... +-+...+..+...+...|++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~ 219 (388)
T d1w3ba_ 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCT
T ss_pred ccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccH
Confidence 33344444555555544444332 2 33455566667777778888888877776542 23456677777788888888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHH
Q 039792 579 KHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMI 655 (819)
Q Consensus 579 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 655 (819)
++|...+....+.+.. +...+..+...|.+.|++++|.+.|++.. +.+..+|..+...+...|++++|++.++...
T Consensus 220 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 298 (388)
T d1w3ba_ 220 DRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp THHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 8888888888776654 56677778888888888888888887654 4456788888888888888889988888887
Q ss_pred HcCCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCc
Q 039792 656 IEGLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDS 733 (819)
Q Consensus 656 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~ 733 (819)
. ..|+ ...+..+...+...|++++|.+.|++..+ +.|+ ...+..+...+-+.+ +.+.|...++++++++|+++
T Consensus 299 ~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~P~~~ 373 (388)
T d1w3ba_ 299 R--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQG-KLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp H--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTT-CCHHHHHHHHHHHTTCTTCH
T ss_pred c--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH
Confidence 7 4554 45677788888888999999988888876 3344 334555555554443 78889999999999999999
Q ss_pred hhHHHHHHHHHhCCC
Q 039792 734 GSYTLLSNTFACNSM 748 (819)
Q Consensus 734 ~~~~~l~~~y~~~g~ 748 (819)
.+|..|+++|.+.||
T Consensus 374 ~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 374 DAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=7.1e-17 Score=170.25 Aligned_cols=349 Identities=12% Similarity=0.085 Sum_probs=243.4
Q ss_pred hcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCChhHHH
Q 039792 370 CGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMAD--R-NVVSYNAMIEGYSKEEKLSEAL 446 (819)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~ 446 (819)
+.+.|+++.|.+.+..+.+.. +.+...+..+...|.+.|++++|...|++..+ | +..+|..+...|.+.|++++|+
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~ 87 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccc
Confidence 344455555555555555442 11344445555555555555555555555432 2 2334555555555555555555
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHHHHhc---C
Q 039792 447 DLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEM---N 523 (819)
Q Consensus 447 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~ 523 (819)
..+.... +....... ............+....+....... .
T Consensus 88 ~~~~~~~-----------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (388)
T d1w3ba_ 88 EHYRHAL-----------------------------------RLKPDFID-GYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp HHHHHHH-----------------------------------HHCTTCHH-HHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred ccccccc-----------------------------------cccccccc-ccccccccccccccccccccccccccccc
Confidence 5555544 33222111 1112222222222222222222221 1
Q ss_pred CCCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 039792 524 QRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSAL 603 (819)
Q Consensus 524 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 603 (819)
......+..........+....+...+.+..... +-+...+..+...+...|+++.|...+...++..+. +...+..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 209 (388)
T d1w3ba_ 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINL 209 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 2333344455566677788888888888777642 345677788888899999999999999999988755 67888999
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCH
Q 039792 604 IDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLI 679 (819)
Q Consensus 604 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 679 (819)
...|...|++++|...+++.. ..+...|..+...+...|++++|+..|++.++ +.|+. .++..+..++...|++
T Consensus 210 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~ 287 (388)
T d1w3ba_ 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCH
T ss_pred hhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999998766 55677888899999999999999999999998 78875 5788999999999999
Q ss_pred HHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 680 EDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 680 ~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
++|.+.++...... ..+...+..+...+.+.+ +.+.|...++++++++|+++.++..++.+|...|++++|.+.+++.
T Consensus 288 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 365 (388)
T d1w3ba_ 288 AEAEDCYNTALRLC-PTHADSLNNLANIKREQG-NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhccC-CccchhhhHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999987721 233445566666665544 8899999999999999999999999999999999999999999988
Q ss_pred Hh
Q 039792 760 DL 761 (819)
Q Consensus 760 ~~ 761 (819)
.+
T Consensus 366 l~ 367 (388)
T d1w3ba_ 366 IR 367 (388)
T ss_dssp HT
T ss_pred HH
Confidence 65
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=3.4e-11 Score=122.69 Aligned_cols=222 Identities=13% Similarity=0.018 Sum_probs=154.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 039792 534 LLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSL 613 (819)
Q Consensus 534 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 613 (819)
...+.+.|++++|+..|++..+.. +-+..+|..+..++...|+++.|...+..+++..+. +...+..+...|...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccccc
Confidence 344566677777777777766542 224556666666667777777777777777666544 556666667777777777
Q ss_pred HHHHHHHhcCC--CCC----------------hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---chhHHHHHHH
Q 039792 614 EDAYETFGSTT--WKD----------------VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN---YITFVGVLSA 672 (819)
Q Consensus 614 ~~A~~~~~~~~--~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a 672 (819)
++|.+.++... .|+ .......+..+...+...+|.+.|++..+ +.|+ ...+..+...
T Consensus 104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHH
T ss_pred cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH--HhhcccccccchhhHHH
Confidence 77777666533 111 01111122334455677888888888887 4554 3457777888
Q ss_pred HHccCCHHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchH
Q 039792 673 CSHAGLIEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWAD 751 (819)
Q Consensus 673 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 751 (819)
+...|++++|...|++.... .|+ ...|..+...+.+.+ +.+.|...++++++++|+++.+|..|+.+|...|++++
T Consensus 182 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~ 258 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGN-QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE 258 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHhhhhccccccccc--ccccccchhhhhhcccccc-cchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHH
Confidence 89999999999999998872 232 345555555555443 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 039792 752 AKQVRKKMDLD 762 (819)
Q Consensus 752 a~~~~~~m~~~ 762 (819)
|.+.+++..+.
T Consensus 259 A~~~~~~al~l 269 (323)
T d1fcha_ 259 AVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=3.9e-10 Score=114.59 Aligned_cols=113 Identities=18% Similarity=0.305 Sum_probs=66.6
Q ss_pred ChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHH
Q 039792 577 SLKHGQQFHNHLIKLGLD-FDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFR 652 (819)
Q Consensus 577 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 652 (819)
...++...+..+++..+. .+..++..+...+...|++++|...|++.. +.+...|..+...|...|++++|++.|+
T Consensus 151 ~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 230 (323)
T d1fcha_ 151 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR 230 (323)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHH
Confidence 344444445444443322 234455555666666666666666665543 3345566666666666677777777776
Q ss_pred HHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 653 EMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 653 ~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+.++ +.|+. .++..+..+|.+.|++++|++.|++.++
T Consensus 231 ~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 231 RALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHH--HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666 45654 3566666667777777777777666655
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=8.8e-09 Score=100.46 Aligned_cols=216 Identities=13% Similarity=-0.045 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 039792 542 ENEEAIKLYLELLLSQQ-RP--NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYE 618 (819)
Q Consensus 542 ~~~~A~~~~~~m~~~g~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 618 (819)
+.+.++.-+++...... .+ ...++..+..++.+.|++++|...|+..++..+. ++.+++.+..+|.+.|++++|.+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhh
Confidence 34566666777665322 11 2245666677888999999999999999998765 78889999999999999999999
Q ss_pred HHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 039792 619 TFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGVLSACSHAGLIEDGLDHFQSMAGFGI 694 (819)
Q Consensus 619 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 694 (819)
.|+++. +.+..+|..+...|...|++++|++.|++.++ ..|+.. ....+..++.+.+..+....+........
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 169 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-
Confidence 998877 44577899999999999999999999999998 567543 33444445556666555555555554422
Q ss_pred ccCchHHHHHHHHhhcccc--hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 695 EPGMEHYASVVSLLGRNVW--NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 695 ~p~~~~y~~li~~l~r~~w--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
+....+......++.... ..+.+...........|....+|..|+.+|...|++++|.+.+++..+.
T Consensus 170 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 170 -KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp -CCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 222233333333332200 2334444444555566777788999999999999999999999988754
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=3.5e-08 Score=98.87 Aligned_cols=220 Identities=9% Similarity=0.039 Sum_probs=160.3
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 039792 530 WNAMLLGYTQQLENEEAIKLYLELLLSQQRPN-EFTFAALITAASNLG-SLKHGQQFHNHLIKLGLDFDSFITSALIDMY 607 (819)
Q Consensus 530 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 607 (819)
++.+-..+.+.+.+++|++++++.++. .|+ ...|.....++...| ++++|...++.+++..+. +..+|..+...+
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~ 122 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHH
Confidence 444555677788889999999988874 554 445666666666666 589999999999888766 788888889999
Q ss_pred HhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCC-----
Q 039792 608 AKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGL----- 678 (819)
Q Consensus 608 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----- 678 (819)
.+.|++++|.+.++++. +.+...|..+...+...|++++|++.++++++ +.|+. ..|+.+...+.+.|.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccchhh
Confidence 99999999999998877 55788999999999999999999999999998 77864 567766666655554
Q ss_pred -HHHHHHHHHHHHhcCCccC-chHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCch--hHHHHHHHHHhC--CCchHH
Q 039792 679 -IEDGLDHFQSMAGFGIEPG-MEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSG--SYTLLSNTFACN--SMWADA 752 (819)
Q Consensus 679 -~~~a~~~~~~m~~~g~~p~-~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~y~~~--g~~~~a 752 (819)
+++|++.+.+.++. .|+ ...|..+..++... ..+.+...+++++++.|+... .+..++.+|... ++.+.+
T Consensus 201 ~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 201 VLEREVQYTLEMIKL--VPHNESAWNYLKGILQDR--GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp HHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTT--CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhc--ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 67888888887762 233 33444444455443 456777888888888886544 455677777653 444444
Q ss_pred HHHHHH
Q 039792 753 KQVRKK 758 (819)
Q Consensus 753 ~~~~~~ 758 (819)
...+++
T Consensus 277 ~~~~~k 282 (315)
T d2h6fa1 277 EDILNK 282 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1e-07 Score=95.44 Aligned_cols=210 Identities=9% Similarity=0.021 Sum_probs=156.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhcCC--C-CeeehhhhHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039792 496 VFAGSALIDAYSKCFSNKDARLVFDEMNQ--R-DIVVWNAMLLGYTQQL-ENEEAIKLYLELLLSQQRPNEFTFAALITA 571 (819)
Q Consensus 496 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 571 (819)
...++.+...+.+.+..++|.++++++.+ | +...|+....++...| ++++|+..+++..+.. +-+..+|......
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 34455566677788888888888888765 3 4457777777777766 4899999999887642 3356778888888
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCC-----
Q 039792 572 ASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGE----- 643 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----- 643 (819)
+...|++++|...+..+++..+. +...|..+...|.+.|++++|.+.|+++. +.+...|+.+...+...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 88999999999999999988766 78888889999999999999999998876 4567788877777666554
Q ss_pred -hHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhc
Q 039792 644 -PMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGR 710 (819)
Q Consensus 644 -~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r 710 (819)
+++|++.+.+.++ +.|+. ..|..+...+...| .+++.+.++...+ .....+...+..+++.+..
T Consensus 201 ~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 201 VLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHH--hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 5789999999888 67865 55666666665544 5778888888776 3323334455666666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=2.8e-07 Score=93.97 Aligned_cols=199 Identities=12% Similarity=-0.025 Sum_probs=121.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHH----CCCCC--C-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC----CchhHHH
Q 039792 533 MLLGYTQQLENEEAIKLYLELLL----SQQRP--N-EFTFAALITAASNLGSLKHGQQFHNHLIKLGLD----FDSFITS 601 (819)
Q Consensus 533 li~~~~~~g~~~~A~~~~~~m~~----~g~~p--~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~ 601 (819)
+...+...|++..+...+.+... .+..+ . ...+..+...+...|+++.+...+......... .....+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 34445555666666665555432 11111 1 123444556667778888887777777654322 1233444
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC-------CC---ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc---hhHHH
Q 039792 602 ALIDMYAKCGSLEDAYETFGSTT-------WK---DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY---ITFVG 668 (819)
Q Consensus 602 ~li~~~~~~g~~~~A~~~~~~~~-------~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ 668 (819)
.+...+...|+..++...+.... .. ....+..+...+...|+.++|...+++..+.....+. ..+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 55566667777777666654322 11 1234566667778888888888888877652222122 23555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCC
Q 039792 669 VLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSM 748 (819)
Q Consensus 669 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 748 (819)
+..++...|++++|...++..... . +.....|.....+..++.+|...|+
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~-----------------------------~-~~~~~~~~~~~~~~~la~~~~~~g~ 306 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNEN-----------------------------A-RSLRLMSDLNRNLLLLNQLYWQAGR 306 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----------------------------H-HHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-----------------------------H-hhcccChHHHHHHHHHHHHHHHCCC
Confidence 677888889999998888776530 0 1123334455678889999999999
Q ss_pred chHHHHHHHHHHh
Q 039792 749 WADAKQVRKKMDL 761 (819)
Q Consensus 749 ~~~a~~~~~~m~~ 761 (819)
+++|.+.+++..+
T Consensus 307 ~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 307 KSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=8.5e-07 Score=88.35 Aligned_cols=181 Identities=9% Similarity=-0.038 Sum_probs=133.2
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCC-hHhHHHHHHHHHhCCChHHHHHHHH
Q 039792 577 SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKD-VACWNSMICTNAHHGEPMKALLLFR 652 (819)
Q Consensus 577 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 652 (819)
..+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+++. ..+ ...|...+..+.+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 356777888888765445566778888888889999999999998764 223 3468888888888899999999999
Q ss_pred HHHHcCCCCCc-hhHHHHHHH-HHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccC
Q 039792 653 EMIIEGLEPNY-ITFVGVLSA-CSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISID 729 (819)
Q Consensus 653 ~m~~~g~~p~~-~t~~~ll~a-~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~ 729 (819)
++++ ..|+. ..|...... +...|+.+.|..+|+.+.. .+.. ...+...++.+-+.+ +.+.|+.++++++...
T Consensus 159 ~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~--~~~w~~y~~~~~~~g-~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 159 KARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI--PEYVLAYIDYLSHLN-EDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTC-CHHHHHHHHHHHHHSS
T ss_pred HHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhC
Confidence 9887 45543 344443332 3456888999999999887 3332 345666666665544 8888999999999987
Q ss_pred CCCch----hHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 730 PMDSG----SYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 730 p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
|.++. .|..........|+.+.+.++.+++.+.
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76543 5666777667789999999999988663
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=1.2e-06 Score=87.31 Aligned_cols=195 Identities=15% Similarity=0.128 Sum_probs=123.6
Q ss_pred ChHHHHHHHHhcCC----CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 039792 511 SNKDARLVFDEMNQ----RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHN 586 (819)
Q Consensus 511 ~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 586 (819)
..++|..+|++..+ .+...|...+..+...|+.++|..+|+++...........|...+..+.+.|+++.|+.+++
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34566666665432 23445666667777777778888887777764322234456777777777777888888887
Q ss_pred HHHHhCCCCchhHHHHHHHH-HHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCC
Q 039792 587 HLIKLGLDFDSFITSALIDM-YAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEG-LEP 661 (819)
Q Consensus 587 ~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 661 (819)
.+++.++. +...+...... +...|+.+.|..+|+.+. +.+...|...+..+...|+.++|..+|++.+... ..|
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 77766543 33344333333 333567777777777766 3456677777777777788888888888877632 333
Q ss_pred Cc--hhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCchHHHHHHH
Q 039792 662 NY--ITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGMEHYASVVS 706 (819)
Q Consensus 662 ~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~ 706 (819)
+. ..|...+.--...|+.+.+..+.+++.+ ++-.+.......+++
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 285 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVD 285 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccccchHHHHHH
Confidence 32 3466666655666888888888777766 555554444443333
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.60 E-value=3e-08 Score=100.73 Aligned_cols=214 Identities=6% Similarity=-0.140 Sum_probs=137.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 039792 538 TQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLG--SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLED 615 (819)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 615 (819)
...|++++|+.++++..... +-+...+..+..++...+ +.+++...+..+.+..+......+......+...|..++
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence 34455678888888877642 334555555555555544 477888888888877654322333445567777888888
Q ss_pred HHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHh-
Q 039792 616 AYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAG- 691 (819)
Q Consensus 616 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~- 691 (819)
|...++... +.+..+|+.+...+...|++++|...+++..+ +.|+.. .+...+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHHh
Confidence 888888776 34567788888888888888777666655554 333322 222334455666677777776665
Q ss_pred cCCccCch-HHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 692 FGIEPGME-HYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 692 ~g~~p~~~-~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
....+... ....+....+ +.+.+...+.++++.+|.+..+|..++.+|...|++++|.+.+++..+
T Consensus 238 ~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 238 RAEPLFRCELSVEKSTVLQ----SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp CCCCSSSCCCCHHHHHHHH----HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHh----hHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22222111 1112222222 566777778888888888888888888888888888888888887765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.58 E-value=5.1e-08 Score=98.95 Aligned_cols=230 Identities=8% Similarity=-0.017 Sum_probs=167.9
Q ss_pred hcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCChHHH
Q 039792 508 KCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQL--ENEEAIKLYLELLLSQQRPNEFTFAA-LITAASNLGSLKHG 581 (819)
Q Consensus 508 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~a 581 (819)
..|.+++|..+|+...+ .+...|..+..++...+ +.++|+..+.+..+.. +++...+.. ....+...+..+.|
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence 44556677777777653 35556776766666655 4789999999988753 344555544 44566778999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039792 582 QQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (819)
...++.+++.++. +...|+.+...|.+.|++++|...++....-+.... .+...+...+..+++...+.+... ..|
T Consensus 164 l~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l~--~~~ 239 (334)
T d1dcea1 164 LAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLL--GRA 239 (334)
T ss_dssp HHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHHH--SCC
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHHH--hCc
Confidence 9999999988765 788899999999999999888766665442222221 233345566778888999998887 556
Q ss_pred C-chhHHHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHH
Q 039792 662 N-YITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLL 739 (819)
Q Consensus 662 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l 739 (819)
+ ..++..+...+...|+.++|...+.+... ..| +...+..+...+.+.+ +.+.|...++++++++|.+..+|..|
T Consensus 240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~-~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 240 EPLFRCELSVEKSTVLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLL-YEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGG-GHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 4 45677777788888999999999887764 233 2345556666666544 88999999999999999999999999
Q ss_pred HHHHHh
Q 039792 740 SNTFAC 745 (819)
Q Consensus 740 ~~~y~~ 745 (819)
++.+..
T Consensus 317 ~~~~~~ 322 (334)
T d1dcea1 317 RSKFLL 322 (334)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 888764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=3.3e-06 Score=85.69 Aligned_cols=156 Identities=15% Similarity=0.031 Sum_probs=99.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCCC--chhHHHHHHH
Q 039792 536 GYTQQLENEEAIKLYLELLLS----QQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKL----GLDF--DSFITSALID 605 (819)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~ 605 (819)
.+...|+++.+...+...... +......++......+...+....+...+...... +..+ ....+..+..
T Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T d1hz4a_ 142 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 221 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH
Confidence 334444444444444444321 11122333444444555566666666655554432 1111 1234556677
Q ss_pred HHHhcCCHHHHHHHHhcCCCC-------ChHhHHHHHHHHHhCCChHHHHHHHHHHHH----cCCCCCc-hhHHHHHHHH
Q 039792 606 MYAKCGSLEDAYETFGSTTWK-------DVACWNSMICTNAHHGEPMKALLLFREMII----EGLEPNY-ITFVGVLSAC 673 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~t~~~ll~a~ 673 (819)
.+...|+.++|...++..... ....+..+...+...|++++|...+++.+. .+..|+. .++..+..++
T Consensus 222 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 301 (366)
T d1hz4a_ 222 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 301 (366)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHH
Confidence 788899999999998876521 123566788889999999999999998864 3455554 4678888899
Q ss_pred HccCCHHHHHHHHHHHHh
Q 039792 674 SHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 674 ~~~g~~~~a~~~~~~m~~ 691 (819)
...|++++|.+.+++..+
T Consensus 302 ~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 302 WQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999988765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=3.5e-06 Score=81.29 Aligned_cols=94 Identities=15% Similarity=-0.093 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC---CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 039792 498 AGSALIDAYSKCFSNKDARLVFDEMNQ---RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASN 574 (819)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 574 (819)
++..+...|.+.|++++|...|++..+ .++.+|+.+..+|.+.|++++|++.|++..+.. +-+..++..+..++..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHH
Confidence 444445555555555555555555432 234455555555555555555555555555431 1123344444455555
Q ss_pred cCChHHHHHHHHHHHHhC
Q 039792 575 LGSLKHGQQFHNHLIKLG 592 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~ 592 (819)
.|+++.|...++..++..
T Consensus 118 ~g~~~~A~~~~~~al~~~ 135 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDD 135 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHHHhhc
Confidence 555555555555555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.3e-06 Score=79.65 Aligned_cols=137 Identities=9% Similarity=0.027 Sum_probs=106.8
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHH
Q 039792 604 IDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 604 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 682 (819)
...+...|+++.|.+.|+++..++...|..+...|...|++++|++.|++.++ +.|+. ..|..+..+|.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 45677899999999999999999999999999999999999999999999999 78875 6799999999999999999
Q ss_pred HHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 683 LDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 683 ~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
...|++.....-......|. .+|. ...+....++..++.+|...|+|++|.+.+++..+.
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~----~~~~----------------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYK----ILGL----------------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECG----GGTB----------------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccCchHHHH----Hhhh----------------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999987621111100000 0010 011112356778999999999999999998877653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.22 E-value=4.6e-06 Score=76.86 Aligned_cols=96 Identities=9% Similarity=-0.025 Sum_probs=55.5
Q ss_pred ChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHH
Q 039792 627 DVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVV 705 (819)
Q Consensus 627 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li 705 (819)
+...+......|.+.|++++|+..|++.++ +.|+. ..|..+..+|.+.|++++|+..|+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~------------------ 62 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCR------------------ 62 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHH------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHH------------------
Confidence 333444455666666666666666666666 45644 446666666666666666655543
Q ss_pred HHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 039792 706 SLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMD 760 (819)
Q Consensus 706 ~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 760 (819)
++++++|+++.+|..++.+|...|++++|...+++..
T Consensus 63 ------------------~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 63 ------------------RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp ------------------HHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=5.3e-06 Score=68.48 Aligned_cols=30 Identities=13% Similarity=0.014 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
+.+.|...++++++++|+++..+..+.++.
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 344444445556666666666666666554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.12 E-value=2.4e-05 Score=76.70 Aligned_cols=127 Identities=9% Similarity=-0.093 Sum_probs=67.7
Q ss_pred hHHHHHHHHHh-CCChHHHHHHHHHHHHc----CCCCC-chhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCccCch---
Q 039792 630 CWNSMICTNAH-HGEPMKALLLFREMIIE----GLEPN-YITFVGVLSACSHAGLIEDGLDHFQSMAG-FGIEPGME--- 699 (819)
Q Consensus 630 ~~~~li~~~~~-~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~--- 699 (819)
.+..+...|.. .|++++|++.+++..+. +-.+. ..++..+...+...|++++|.+.|++... ....+...
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 34445555533 47777777777776541 11111 13466677778888888888888888766 22222111
Q ss_pred --HH-HHHHHHhhcccchhhhHHHHHHHHHccCCCCchh-----HHHHHHHHHh--CCCchHHHHHHHH
Q 039792 700 --HY-ASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGS-----YTLLSNTFAC--NSMWADAKQVRKK 758 (819)
Q Consensus 700 --~y-~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~y~~--~g~~~~a~~~~~~ 758 (819)
.| ...+..+.. ++.+.+...++++.+++|..+.+ ...|+..|.. .+++++|...++.
T Consensus 199 ~~~~~~~~~~~l~~--~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 199 KDYFLKKGLCQLAA--TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 11 111111222 27788888888888888754432 2344445444 3457788777753
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.10 E-value=7e-06 Score=67.09 Aligned_cols=89 Identities=12% Similarity=-0.018 Sum_probs=66.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcc
Q 039792 633 SMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN 711 (819)
Q Consensus 633 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~ 711 (819)
.+...+.+.|++++|+..|++.++ ..|+. .+|..+..++.+.|++++|+..
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~-------------------------- 72 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIA-------------------------- 72 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHH--------------------------
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcc--------------------------
Confidence 345566677777777777777777 56654 4566666677777766665544
Q ss_pred cchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 712 VWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 712 ~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
++++++++|+++.+|..|+.+|...|++++|.+.+++.
T Consensus 73 ----------~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 73 ----------LNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 110 (112)
T ss_dssp ----------HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------cccccccccccccchHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45667788999999999999999999999999988865
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=2e-05 Score=69.11 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=41.9
Q ss_pred HHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHH
Q 039792 605 DMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIE 680 (819)
Q Consensus 605 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 680 (819)
..|.+.|++++|...|++.. +.+...|..+...|...|++++|+..|++.++ +.|+. .+|..+..++...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHHHHHcCCHH
Confidence 34445555555555555433 33444555555555555555555555555555 44543 34555555555555555
Q ss_pred HHHHHHHHH
Q 039792 681 DGLDHFQSM 689 (819)
Q Consensus 681 ~a~~~~~~m 689 (819)
+|...+++.
T Consensus 96 eA~~~~~~a 104 (159)
T d1a17a_ 96 AALRDYETV 104 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=2.1e-05 Score=64.68 Aligned_cols=84 Identities=20% Similarity=0.137 Sum_probs=38.0
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHH
Q 039792 572 ASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKAL 648 (819)
Q Consensus 572 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 648 (819)
+...|++++|...+..+++..+. +...|..+..+|.+.|++++|.+.+++.. +.+...|..+..++...|++++|+
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~ 91 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAK 91 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHH
Confidence 33444444444444444444332 34444444444444444444444444333 233444444444444444444444
Q ss_pred HHHHHHHH
Q 039792 649 LLFREMII 656 (819)
Q Consensus 649 ~~~~~m~~ 656 (819)
..|++.++
T Consensus 92 ~~~~~a~~ 99 (117)
T d1elwa_ 92 RTYEEGLK 99 (117)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 44444444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=8.4e-05 Score=67.29 Aligned_cols=120 Identities=9% Similarity=-0.002 Sum_probs=68.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 039792 536 GYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLED 615 (819)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 615 (819)
.+...|++++|++.|.++ .+|+..++..+-.++...|+++.|...+++.++..+. +...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHH
Confidence 344555566665555542 2345555555555556666666666666666555543 45555555555666666666
Q ss_pred HHHHHhcCC---CCC----------------hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039792 616 AYETFGSTT---WKD----------------VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPN 662 (819)
Q Consensus 616 A~~~~~~~~---~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (819)
|.+.|++.. +++ ..++..+..+|.+.|++++|.+.|++..+ +.|+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~--~~~~ 152 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSE 152 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCS
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCC
Confidence 655554421 000 12345566677777888888887777766 4554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.92 E-value=0.00015 Score=70.64 Aligned_cols=156 Identities=11% Similarity=-0.003 Sum_probs=90.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-----CchhHHHHH
Q 039792 534 LLGYTQQLENEEAIKLYLELLLS----QQRP-NEFTFAALITAASNLGSLKHGQQFHNHLIKLGLD-----FDSFITSAL 603 (819)
Q Consensus 534 i~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l 603 (819)
...|...|++++|.+.|.+..+. +-++ -..+|..+..++.+.|++++|...++...+.... ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 34455555555555555554431 1111 1235566666667777777777776665542111 113344455
Q ss_pred HHHHHh-cCCHHHHHHHHhcCC-----CCC----hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch--------h
Q 039792 604 IDMYAK-CGSLEDAYETFGSTT-----WKD----VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI--------T 665 (819)
Q Consensus 604 i~~~~~-~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------t 665 (819)
...|.. .|++++|.+.+++.. ..+ ..+|..+...|...|++++|++.|++... ..|+.. .
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~--~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK--SSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTSSCTTTGGGHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH--hCccchhhhhhHHHH
Confidence 555533 577777777776543 111 23466777888888888888888888776 333221 1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 666 FVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 666 ~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
+...+..+...|+++.|...+++..+
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444456677888888888887766
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=8e-05 Score=65.14 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=81.1
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChH
Q 039792 569 ITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPM 645 (819)
Q Consensus 569 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 645 (819)
...+.+.|+++.|...|+.+++..+. +...|..+..+|...|++++|.+.|++.. +.+..+|..+..+|...|+++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 34677889999999999999988765 78888999999999999999999999776 556679999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCchh
Q 039792 646 KALLLFREMIIEGLEPNYIT 665 (819)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~~t 665 (819)
+|+..+++... +.|+...
T Consensus 96 eA~~~~~~a~~--~~p~~~~ 113 (159)
T d1a17a_ 96 AALRDYETVVK--VKPHDKD 113 (159)
T ss_dssp HHHHHHHHHHH--HSTTCHH
T ss_pred HHHHHHHHHHH--cCCCCHH
Confidence 99999999998 6787643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.89 E-value=2.8e-05 Score=71.34 Aligned_cols=96 Identities=8% Similarity=-0.114 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHH
Q 039792 560 PNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMIC 636 (819)
Q Consensus 560 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 636 (819)
|+...+......+.+.|+++.|...|..+++..+. ++..|..+..+|.+.|++++|...|++.. +.+..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 33444444444555555555555555555554433 44455555555555555555555555443 223344555555
Q ss_pred HHHhCCChHHHHHHHHHHHH
Q 039792 637 TNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~ 656 (819)
+|...|++++|+..|++..+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.88 E-value=0.00014 Score=62.94 Aligned_cols=111 Identities=12% Similarity=0.009 Sum_probs=68.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhh
Q 039792 630 CWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLG 709 (819)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~ 709 (819)
.+......+.+.|++++|+..|++.+. +.|....... .........+ ....|..+...|-
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~--~~~~~~~~~~-----------~~~~~~~~~~-------~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDD-----------QILLDKKKNI-------EISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCC-----------HHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcchhhhhh-----------HHHHHhhhhH-------HHHHHhhHHHHHH
Confidence 445556677788888888888888776 3322110000 0000000000 0112222222232
Q ss_pred cccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 710 RNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 710 r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+ +.+.|...++++++++|.+..+|..++.+|...|+|++|...+++..+
T Consensus 79 ~l~-~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 79 KNK-DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred Hhc-ccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 667777778888899999999999999999999999999999988765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=4.7e-05 Score=62.78 Aligned_cols=108 Identities=8% Similarity=-0.088 Sum_probs=57.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCH---HHHHHHHHHHHhcCCccC-chHHHHHHHH
Q 039792 633 SMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLI---EDGLDHFQSMAGFGIEPG-MEHYASVVSL 707 (819)
Q Consensus 633 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~---~~a~~~~~~m~~~g~~p~-~~~y~~li~~ 707 (819)
.+++.+...+++++|.+.|++.++ +.|+. .++..+..++.+.++. ++|+++|+++......|+ ...+..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345555566666666666666666 45543 4556666666554433 346666665554222222 1122233333
Q ss_pred hhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHH
Q 039792 708 LGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTF 743 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 743 (819)
|.+.+ +.+.|...++++++++|++..+...+..+.
T Consensus 82 y~~~g-~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 82 NYRLK-EYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHh-hhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 32222 566666666677777777766665555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.00012 Score=60.14 Aligned_cols=100 Identities=12% Similarity=-0.045 Sum_probs=71.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHhcCCCCC--h---HhHHHHHHHH
Q 039792 567 ALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSL---EDAYETFGSTTWKD--V---ACWNSMICTN 638 (819)
Q Consensus 567 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~--~---~~~~~li~~~ 638 (819)
.+++.+...+++++|++.|+..++.++. ++.++..+..++.+.++. ++|.++|+++...+ . .+|..|..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4566677777888888888888887755 667777777777765544 45788887766322 2 2567778888
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 039792 639 AHHGEPMKALLLFREMIIEGLEPNYITFVGV 669 (819)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 669 (819)
.+.|++++|++.|+++++ +.|+..-...+
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l 111 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQNNQAKEL 111 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH--hCcCCHHHHHH
Confidence 888888888888888888 77876543333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00022 Score=62.90 Aligned_cols=48 Identities=8% Similarity=0.010 Sum_probs=36.1
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 77 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 77 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666677777777777777777777777777777777777777776654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.73 E-value=5e-05 Score=61.78 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=67.4
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCC
Q 039792 603 LIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGL 678 (819)
Q Consensus 603 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 678 (819)
+...+.+.|++++|...|++.. +.+..+|..+...+...|++++|+..|++.++ +.|+. ..+..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHCCC
Confidence 4556777788888888887766 34567788888888888888888888888888 67764 577888888888888
Q ss_pred HHHHHHHHHHHH
Q 039792 679 IEDGLDHFQSMA 690 (819)
Q Consensus 679 ~~~a~~~~~~m~ 690 (819)
+++|.+.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887753
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.73 E-value=0.0048 Score=58.54 Aligned_cols=221 Identities=13% Similarity=-0.017 Sum_probs=112.9
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 039792 532 AMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASN----LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMY 607 (819)
Q Consensus 532 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 607 (819)
.|...+.+.+++++|++.|++..+.| +...+..|-..+.. ..+...+...+....+.+ ++.....+...+
T Consensus 7 ~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~ 80 (265)
T d1ouva_ 7 GLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 80 (265)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccccc
Confidence 33344445555666666666555544 23333333333332 345555555555555544 222233333333
Q ss_pred Hh----cCCHHHHHHHHhcCCC-CChHhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHc---
Q 039792 608 AK----CGSLEDAYETFGSTTW-KDVACWNSMICTNAH----HGEPMKALLLFREMIIEGLEPNYITFVGVLSACSH--- 675 (819)
Q Consensus 608 ~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--- 675 (819)
.. .++.+.|...++.... ........+...+.. ......+...+.+... ..+...+..|...+..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L~~~~~~~~~ 157 (265)
T d1ouva_ 81 YSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTILGSLYDAGRG 157 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSS
T ss_pred ccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhhhhhhccCCC
Confidence 22 3445555555554432 222222223223322 2345555555555544 2233445555554443
Q ss_pred -cCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcc-cchhhhHHHHHHHHHccCCCCchhHHHHHHHHHh----CCCc
Q 039792 676 -AGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN-VWNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC----NSMW 749 (819)
Q Consensus 676 -~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~-~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~ 749 (819)
..+...+...++...+.|..+....++.+ -..|.. .-|.+.|...++++.+.. ++..+..|+.+|.. ..+.
T Consensus 158 ~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~-y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~ 234 (265)
T d1ouva_ 158 TPKDLKKALASYDKACDLKDSPGCFNAGNM-YHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNE 234 (265)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCS
T ss_pred cccccccchhhhhccccccccccccchhhh-cccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCH
Confidence 34556666666666554432221111111 111110 017788888888888864 67888899999986 4488
Q ss_pred hHHHHHHHHHHhCCC
Q 039792 750 ADAKQVRKKMDLDGL 764 (819)
Q Consensus 750 ~~a~~~~~~m~~~g~ 764 (819)
++|.+.+++..+.|.
T Consensus 235 ~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 235 KQAIENFKKGCKLGA 249 (265)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCcC
Confidence 999999998877764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=0.00021 Score=63.03 Aligned_cols=115 Identities=11% Similarity=-0.021 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---C--CC-------------hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039792 600 TSALIDMYAKCGSLEDAYETFGSTT---W--KD-------------VACWNSMICTNAHHGEPMKALLLFREMIIEGLEP 661 (819)
Q Consensus 600 ~~~li~~~~~~g~~~~A~~~~~~~~---~--~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (819)
+.-....|.+.|++++|.+.|.+.. + +. ..+|+.+..+|.+.|++++|+..+++.++ +.|
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~--~~p 93 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--LDS 93 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh--ccc
Confidence 3344556667777777777665443 0 00 12344445555555555555555555555 445
Q ss_pred Cc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHH
Q 039792 662 NY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLS 740 (819)
Q Consensus 662 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~ 740 (819)
+. .++..+..+|...|++++|. ..++++++++|+|+.+...++
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~------------------------------------~~~~~al~l~P~n~~~~~~l~ 137 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELAR------------------------------------ADFQKVLQLYPNNKAAKTQLA 137 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHH------------------------------------HHHHHHHHHCSSCHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHH------------------------------------HHHHHHHHhCCCCHHHHHHHH
Confidence 33 34555555555555555554 455666677788888887787
Q ss_pred HHHHhCCCchHH
Q 039792 741 NTFACNSMWADA 752 (819)
Q Consensus 741 ~~y~~~g~~~~a 752 (819)
.++...+...+.
T Consensus 138 ~~~~~~~~~~~~ 149 (170)
T d1p5qa1 138 VCQQRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777665555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.49 E-value=0.00023 Score=62.82 Aligned_cols=81 Identities=12% Similarity=0.055 Sum_probs=50.6
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHH
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSL 707 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 707 (819)
..|..+..+|.+.|++++|+..+++.++ +.|+. .+|..+..++.+.|++++|++.|
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~--------------------- 134 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADL--------------------- 134 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHH---------------------
Confidence 3455566666666777777777777666 56654 45666666666666666665554
Q ss_pred hhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCC
Q 039792 708 LGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNS 747 (819)
Q Consensus 708 l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 747 (819)
+++++++|+|+.++..|..++....
T Consensus 135 ---------------~~al~l~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 135 ---------------KKAQEIAPEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp ---------------HHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 5555666777776666666654433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.46 E-value=0.0001 Score=63.09 Aligned_cols=134 Identities=14% Similarity=0.102 Sum_probs=80.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHH
Q 039792 575 LGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREM 654 (819)
Q Consensus 575 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 654 (819)
.+.+++|...++..++..+. +...+..+..+|...+++..+.+ ..+++++|++.|++.
T Consensus 10 ~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e---------------------~~~~~~~Ai~~~~kA 67 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISD---------------------AKQMIQEAITKFEEA 67 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhH---------------------HHHHHHHHHHHHHHH
Confidence 34455555555555555433 44444444444444333332222 123457888888888
Q ss_pred HHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCc
Q 039792 655 IIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDS 733 (819)
Q Consensus 655 ~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~ 733 (819)
++ +.|+. .+|..+..+|...|.+. ++.... ..+.+.|...++++++++|+++
T Consensus 68 l~--l~P~~~~a~~~lG~~y~~~g~~~---------------~~~~~~----------~~~~~~A~~~~~kal~l~P~~~ 120 (145)
T d1zu2a1 68 LL--IDPKKDEAVWCIGNAYTSFAFLT---------------PDETEA----------KHNFDLATQFFQQAVDEQPDNT 120 (145)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHHHHC---------------CCHHHH----------HHHHHHHHHHHHHHHHHCTTCH
T ss_pred HH--hcchhhHHHhhHHHHHHHcccch---------------hhHHHH----------HHhHHHhhhhhhcccccCCCHH
Confidence 88 77865 57777777776554321 110000 0156778889999999999999
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 039792 734 GSYTLLSNTFACNSMWADAKQVRKKMDLDGL 764 (819)
Q Consensus 734 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 764 (819)
.++..|+... +|.++..+..+.|+
T Consensus 121 ~~~~~L~~~~-------ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 121 HYLKSLEMTA-------KAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHH-------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHhc
Confidence 8888887664 56666666666654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.45 E-value=0.0063 Score=57.65 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCC-CCChHhHHHHHHHHHh----CCChHHH
Q 039792 577 SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAK----CGSLEDAYETFGSTT-WKDVACWNSMICTNAH----HGEPMKA 647 (819)
Q Consensus 577 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A 647 (819)
....+...+......+ +...+..|...|.. ..+...+...++... ..+..++..|...|.. ..++++|
T Consensus 125 ~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A 201 (265)
T d1ouva_ 125 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEA 201 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred hhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhh
Confidence 3444445554444432 34445555555543 334445555554433 3344555445444443 3456666
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCC
Q 039792 648 LLLFREMIIEGLEPNYITFVGVLSACSH----AGLIEDGLDHFQSMAGFGI 694 (819)
Q Consensus 648 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~ 694 (819)
+..|++..+.| +...+..|...|.+ ..+.++|.++|++..+.|.
T Consensus 202 ~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 202 LARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 66666666544 23344444444443 2255556666666555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=0.00024 Score=59.21 Aligned_cols=88 Identities=9% Similarity=0.081 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--------hhHHHHH
Q 039792 602 ALIDMYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY--------ITFVGVL 670 (819)
Q Consensus 602 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll 670 (819)
.+.+.|.+.|++++|.+.|++.. +.+..+|..+..+|.+.|++++|++.++++++ +.|+. .+|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHH
Confidence 34556666666666666666544 34566666777777777777777777777665 33321 2455555
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 039792 671 SACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 671 ~a~~~~g~~~~a~~~~~~m~~ 691 (819)
..+...+++++|++.|++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 566666777777777766655
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.42 E-value=0.025 Score=54.76 Aligned_cols=135 Identities=8% Similarity=-0.022 Sum_probs=63.9
Q ss_pred CCeeeHHHHHHHHHhcCCchhHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCchhHHHHHH
Q 039792 222 KTAVSWTTIITGYVKSGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLM 301 (819)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 301 (819)
+|..--..+..-|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+.... .+ +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k---~~---~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK---AN---STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHH---HT---CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHH---cC---CHHHHHHHH
Confidence 4444444556666678888888888876532 55666666666766665554432 22 445666666
Q ss_pred HHhHhCCChHHHHHHHhcccCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCC
Q 039792 302 DFYSKCGRVKMARRLFDEIEVKNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSV 373 (819)
Q Consensus 302 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 373 (819)
..+.+.....-|.-. ......+......++..|-..|.+++.+.+++..... -.++...++.++..+++.
T Consensus 77 ~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 666665554433221 1111122223345666666677777766666655421 123444455555555553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.40 E-value=0.0016 Score=57.05 Aligned_cols=48 Identities=10% Similarity=-0.004 Sum_probs=35.1
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.|...++++++++|++..+|..++.+|...|+|++|.+.++++.+
T Consensus 79 ~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 79 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566666667777777777777777777777777777777777776654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.40 E-value=0.045 Score=52.92 Aligned_cols=275 Identities=8% Similarity=0.008 Sum_probs=124.7
Q ss_pred CcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHhhhhhcCCCHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 039792 359 DDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMIEGYSK 438 (819)
Q Consensus 359 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 438 (819)
|..-...+..-|.+.|.++.|..++..+. -|.-++..|.+.++++.|.+++.+.. +..+|..+...+.+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHh
Confidence 33333334444455555555555554321 13344555555566666655555442 34455555555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHhHHHHHHHHHHhCCccchhhHHHHHHHHHhcCChHHHHHH
Q 039792 439 EEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGLIIKYGVFLDVFAGSALIDAYSKCFSNKDARLV 518 (819)
Q Consensus 439 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 518 (819)
.....-+ .+.......+......++..+...|..+....+++..... -..+...++-++..|++.+. +...+.
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~ 154 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREH 154 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHH
Confidence 4433221 1222223334444455566666666666555555544322 12344455666666666542 233333
Q ss_pred HHhcCC-----------CCeeehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 039792 519 FDEMNQ-----------RDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNH 587 (819)
Q Consensus 519 ~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 587 (819)
+..... .....|..++-.|.+.|++++|..+.- . ..++..-....+..+.+..+.+...++...
T Consensus 155 l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~--~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~ 229 (336)
T d1b89a_ 155 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---N--HPTDAWKEGQFKDIITKVANVELYYRAIQF 229 (336)
T ss_dssp HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---H--STTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---H--cchhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence 332211 011234455555666666666655432 2 123333344455566666676666666665
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHH
Q 039792 588 LIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFV 667 (819)
Q Consensus 588 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 667 (819)
.++.. +...+.|+......-+..+..+.++ +.++..-....++..++.| +....+
T Consensus 230 yL~~~----p~~i~~lL~~v~~~~d~~r~V~~~~------------------k~~~l~li~p~Le~v~~~n---~~~vn~ 284 (336)
T d1b89a_ 230 YLEFK----PLLLNDLLMVLSPRLDHTRAVNYFS------------------KVKQLPLVKPYLRSVQNHN---NKSVNE 284 (336)
T ss_dssp HHHHC----GGGHHHHHHHHGGGCCHHHHHHHHH------------------HTTCTTTTHHHHHHHHTTC---CHHHHH
T ss_pred HHHcC----HHHHHHHHHHhccCCCHHHHHHHHH------------------hcCCcHHHHHHHHHHHHcC---hHHHHH
Confidence 55532 2233445555444445554444443 3444444445554444333 234556
Q ss_pred HHHHHHHccCCHHH
Q 039792 668 GVLSACSHAGLIED 681 (819)
Q Consensus 668 ~ll~a~~~~g~~~~ 681 (819)
+|...|...++++.
T Consensus 285 al~~lyie~~d~~~ 298 (336)
T d1b89a_ 285 SLNNLFITEEDYQA 298 (336)
T ss_dssp HHHHHHHHTTCHHH
T ss_pred HHHHHHhCcchhHH
Confidence 66666666666544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.38 E-value=7.3e-05 Score=64.00 Aligned_cols=96 Identities=11% Similarity=-0.090 Sum_probs=74.0
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcccchhh
Q 039792 638 NAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRNVWNVE 716 (819)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~~w~~~ 716 (819)
|.+.+.+++|++.|++.++ +.|+. .++..+..+|...+.+..+.+-.+ .++
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~--------------------------~~~ 58 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQ 58 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHH--------------------------HHH
Confidence 3445668899999999988 77876 467777777776665555443221 456
Q ss_pred hHHHHHHHHHccCCCCchhHHHHHHHHHhCCC-----------chHHHHHHHHHHh
Q 039792 717 LGRYAAEMAISIDPMDSGSYTLLSNTFACNSM-----------WADAKQVRKKMDL 761 (819)
Q Consensus 717 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~-----------~~~a~~~~~~m~~ 761 (819)
.|...++++++++|+++.+|..++++|...|+ |++|.+.+++..+
T Consensus 59 ~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 59 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 78889999999999999999999999988764 6888888887765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.21 E-value=0.0013 Score=57.55 Aligned_cols=91 Identities=5% Similarity=-0.020 Sum_probs=48.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCcc-CchHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 039792 667 VGVLSACSHAGLIEDGLDHFQSMAGFGIEP-GMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFAC 745 (819)
Q Consensus 667 ~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 745 (819)
..+..+|.+.|++++|+..++..+.. .| +...|-.+..++-..+ +.+.|...++++++++|+|+.++..+..+...
T Consensus 68 ~Nla~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~~~~~~~l~-~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 68 LNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMN-EFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhhhcccchhhhhhhhhc--ccchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444555555555555555555541 11 1122222222222211 55566666677777888888888888877766
Q ss_pred CCCchH-HHHHHHHHH
Q 039792 746 NSMWAD-AKQVRKKMD 760 (819)
Q Consensus 746 ~g~~~~-a~~~~~~m~ 760 (819)
.++..+ ..+++++|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 665543 444555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.13 E-value=0.0013 Score=58.12 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=60.9
Q ss_pred hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh-----cCCccCchH
Q 039792 628 VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG-----FGIEPGMEH 700 (819)
Q Consensus 628 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 700 (819)
...+..+...+...|++++|+..++++++ +.|.. ..|..++.+|.+.|+.++|++.|+++.+ .|+.|..++
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 35677889999999999999999999998 78854 6899999999999999999999998743 689998654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.10 E-value=0.002 Score=56.41 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=45.2
Q ss_pred hhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.|...++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 778888889999999999999999999999999999999999998876
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.0039 Score=51.43 Aligned_cols=90 Identities=7% Similarity=0.044 Sum_probs=47.7
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CC-------hHhHHHHHHHHHh
Q 039792 571 AASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTTW---KD-------VACWNSMICTNAH 640 (819)
Q Consensus 571 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~-------~~~~~~li~~~~~ 640 (819)
.+...|++++|...|...++.++. +...+..+..+|.+.|++++|.+.++++.. .+ ..+|..+...+..
T Consensus 13 ~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~ 91 (128)
T d1elra_ 13 DAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK 91 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444432 444444455555555555555555544331 11 1244556666777
Q ss_pred CCChHHHHHHHHHHHHcCCCCCc
Q 039792 641 HGEPMKALLLFREMIIEGLEPNY 663 (819)
Q Consensus 641 ~g~~~~A~~~~~~m~~~g~~p~~ 663 (819)
.+++++|++.|++... ..|+.
T Consensus 92 ~~~~~~A~~~~~kal~--~~~~~ 112 (128)
T d1elra_ 92 EEKYKDAIHFYNKSLA--EHRTP 112 (128)
T ss_dssp TTCHHHHHHHHHHHHH--HCCCH
T ss_pred hCCHHHHHHHHHHHHh--cCCCH
Confidence 7788888888887776 34444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.00012 Score=77.45 Aligned_cols=204 Identities=11% Similarity=0.000 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 039792 544 EEAIKLYLELLLSQQRPNEFTFAALITAA--SNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFG 621 (819)
Q Consensus 544 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 621 (819)
..+.+.++...+....++..-....+..+ ...+.++.+...+....+..+ ++...+..+...+.+.|+.++|...++
T Consensus 66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~ 144 (497)
T d1ya0a1 66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQS 144 (497)
T ss_dssp HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CC
T ss_pred HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence 45566666665543334332222222221 122333444433333333222 245567778888889999999888776
Q ss_pred cCCCCCh-HhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCch
Q 039792 622 STTWKDV-ACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGME 699 (819)
Q Consensus 622 ~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 699 (819)
....++. .++..+...+...|++++|+..|++..+ +.|+. .+|+.|...+...|+..+|...|.+..... .|-..
T Consensus 145 ~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~ 221 (497)
T d1ya0a1 145 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPA 221 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHH
T ss_pred HHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHH
Confidence 6553332 4677788899999999999999999998 78976 689999999999999999999999988632 34455
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHccCC---CCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 039792 700 HYASVVSLLGRNVWNVELGRYAAEMAISIDP---MDSGSYTLLSNTFACNSMWADAKQVRKKM 759 (819)
Q Consensus 700 ~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 759 (819)
.+..|..++.+.. +... .....+ .....++.+..++...+.+++..++.+++
T Consensus 222 a~~nL~~~~~~~~-~~~~-------~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 222 ASTNLQKALSKAL-ESRD-------EVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHHHHHHHHHHHT-TSCC-------CCCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhh-hhhh-------hhccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 6666666655420 0000 000111 11235566767777888887776665544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.05 E-value=0.0018 Score=57.13 Aligned_cols=121 Identities=9% Similarity=-0.089 Sum_probs=77.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchHHHHHHHHhhcc
Q 039792 632 NSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEHYASVVSLLGRN 711 (819)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~l~r~ 711 (819)
..........|++++|.+.|.+.+. +.|...-- .+....-...-..-++... ...+..+...+-+.
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~--l~rG~~l~-----~~~~~~w~~~~r~~l~~~~-------~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALR--EWRGPVLD-----DLRDFQFVEPFATALVEDK-------VLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--TCCSSTTG-----GGTTSTTHHHHHHHHHHHH-------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--hCcccccc-----cCcchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHC
Confidence 3344567788889999888888886 44433210 0000000111111111100 12233344444333
Q ss_pred cchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHh-----CCCcCC
Q 039792 712 VWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDL-----DGLMKE 767 (819)
Q Consensus 712 ~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~-----~g~~~~ 767 (819)
+ +.+.+...++++++++|.+...|..|+.+|...|++++|.+.++++++ .|+.+.
T Consensus 81 g-~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 81 G-RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp T-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred C-CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 3 788999999999999999999999999999999999999999998743 466543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.04 E-value=0.0042 Score=53.12 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 631 WNSMICTNAHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 631 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
|+.+..+|.+.|++++|++.+++.++ +.|+. .+|..+..++...|++++|...|++..+
T Consensus 70 ~~Nla~~~~~l~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 70 NLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhcccchhhhhhhcccc--ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444445555555555555555554 34432 3455555555555555555555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.04 E-value=0.0018 Score=55.88 Aligned_cols=102 Identities=11% Similarity=-0.048 Sum_probs=73.1
Q ss_pred hHHHH--HHHHHhCCChHHHHHHHHHHHHcCCCCC-------------chhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 039792 630 CWNSM--ICTNAHHGEPMKALLLFREMIIEGLEPN-------------YITFVGVLSACSHAGLIEDGLDHFQSMAGFGI 694 (819)
Q Consensus 630 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 694 (819)
+|..+ ...+...|++++|++.|++.++ +.|+ ...|+.+..+|...|++++|.+.+++.+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~--i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~--- 83 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--- 83 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh---
Confidence 45555 3445567899999999999886 3332 24688888899999999999988877764
Q ss_pred ccCchHHHHHHHHhhcccchhhhHHHHHHHHHccCCC----CchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 695 EPGMEHYASVVSLLGRNVWNVELGRYAAEMAISIDPM----DSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 695 ~p~~~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
...+..+..|+ ...+|..++.+|...|++++|.+.+++..+.
T Consensus 84 --------------------------~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 84 --------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp --------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------------cccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11122222222 1236788999999999999999999988753
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.00034 Score=73.88 Aligned_cols=207 Identities=8% Similarity=-0.071 Sum_probs=98.6
Q ss_pred eehhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH--HHHH
Q 039792 528 VVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITS--ALID 605 (819)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~ 605 (819)
..|..+..+|...|++++| |+++... .|+...-..+...+-+ ..+..+.+.++...+....++..-.. .+..
T Consensus 21 ~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw~-~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~ 94 (497)
T d1ya0a1 21 DSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLWN-HAFKNQITTLQGQAKNRANPNRSEVQANLSLF 94 (497)
T ss_dssp CSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHHH-HHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHH
T ss_pred HHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHHH-HHHHHHHHHHHHhcccccCccHHHHHHHHHHH
Confidence 4555566666666766665 4555432 2221100000000000 11233444555544433333322211 1222
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHccCCHHHH
Q 039792 606 MYAKCGSLEDAYETFGSTT---WKDVACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDG 682 (819)
Q Consensus 606 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 682 (819)
.+...|.++.|...+.... .++...|..+...+.+.|+.++|...+++... ..| ..++..+...+...|++++|
T Consensus 95 l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~-~~~~~~LG~l~~~~~~~~~A 171 (497)
T d1ya0a1 95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YIC-QHCLVHLGDIARYRNQTSQA 171 (497)
T ss_dssp HHHHHHHHHHHHHHHTC-------------------------------CCHHHH--HHH-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CCH-HHHHHHHHHHHHHcccHHHH
Confidence 2334556677776666544 34555677777778888888888887776654 222 24667777788888888888
Q ss_pred HHHHHHHHhcCCccCc-hHHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhC
Q 039792 683 LDHFQSMAGFGIEPGM-EHYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACN 746 (819)
Q Consensus 683 ~~~~~~m~~~g~~p~~-~~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 746 (819)
...|++..+ +.|+. ..|+.+..++...+ +...|...+.+++.+.|+.+.++..|+.+|.+.
T Consensus 172 ~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~-~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 172 ESYYRHAAQ--LVPSNGQPYNQLAILASSKG-DHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHH--HCTTBSHHHHHHHHHHHHTT-CHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 888888776 23443 45666666554332 677788888888888888888888887777543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.69 E-value=0.0007 Score=64.10 Aligned_cols=116 Identities=11% Similarity=0.008 Sum_probs=74.4
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCccCchH----HHHHHHHhhcccc
Q 039792 639 AHHGEPMKALLLFREMIIEGLEPNY-ITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPGMEH----YASVVSLLGRNVW 713 (819)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~----y~~li~~l~r~~w 713 (819)
.+.|++++|++.+++.++ ..|+. ..+..+...++..|++++|...|+...+. .|+... |..++...+.
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~--- 79 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQA--- 79 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHH---
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccc---
Confidence 456888888888888888 67865 57788888888888888888888888762 243221 2222211111
Q ss_pred hhhhHHHHHHH-HHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 039792 714 NVELGRYAAEM-AISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLD 762 (819)
Q Consensus 714 ~~~~a~~~~~~-~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 762 (819)
.+.+...... .+..+|++...+...+.++...|++++|.+.++++.+.
T Consensus 80 -~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 80 -RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp -HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -cHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 0000000011 11224444566677788899999999999999988764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.37 E-value=0.0042 Score=58.55 Aligned_cols=116 Identities=10% Similarity=-0.018 Sum_probs=56.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 039792 539 QQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYE 618 (819)
Q Consensus 539 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 618 (819)
+.|++++|+..+++.++. -+-|...+..+...++..|++++|...++...+..+. +...+..+...+...+..+++..
T Consensus 8 ~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHHH
Confidence 446666666666666654 1334555666666666666666666666666665433 33344444444433333333222
Q ss_pred HHhcC-C--CC-ChHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039792 619 TFGST-T--WK-DVACWNSMICTNAHHGEPMKALLLFREMII 656 (819)
Q Consensus 619 ~~~~~-~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 656 (819)
-.... . .| +...+......+...|+.++|.++++++.+
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 11111 0 11 111222233344555666666666655555
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.06 E-value=0.0089 Score=51.18 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=48.6
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCCCc-----hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039792 629 ACWNSMICTNAHHGEPMKALLLFREMIIE-----GLEPNY-----ITFVGVLSACSHAGLIEDGLDHFQSMAG 691 (819)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 691 (819)
.+|+.+..+|...|++++|++.+++.++. ...++. ..+..+..+|...|++++|++.|++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888889988888888887751 122321 2467788899999999999999999775
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.04 E-value=0.011 Score=45.56 Aligned_cols=56 Identities=7% Similarity=-0.050 Sum_probs=29.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcC-----CCCC-chhHHHHHHHHHccCCHHHHHHHHHH
Q 039792 633 SMICTNAHHGEPMKALLLFREMIIEG-----LEPN-YITFVGVLSACSHAGLIEDGLDHFQS 688 (819)
Q Consensus 633 ~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 688 (819)
.+...+.+.|++++|+..|++.++.. ..++ ..++..|..++.+.|++++|+..+++
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~ 71 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHH
Confidence 45556666666666666666665420 1111 12455555566666655555555433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.78 E-value=0.042 Score=41.95 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---------CCC-hHhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCch-hHHHH
Q 039792 601 SALIDMYAKCGSLEDAYETFGSTT---------WKD-VACWNSMICTNAHHGEPMKALLLFREMIIEGLEPNYI-TFVGV 669 (819)
Q Consensus 601 ~~li~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l 669 (819)
--+...+.+.|++++|...|++.. .++ ..+++.|..+|.+.|++++|+..++++++ +.|+.. ++..+
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~~~a~~Nl 86 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence 345566666666666666665432 111 34678888999999999999999999998 788763 44443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.52 E-value=0.52 Score=38.09 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039792 542 ENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDSFITSALIDMYA 608 (819)
Q Consensus 542 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 608 (819)
++++|+++|++..+.|...- ...+. .....+.++|..+++...+.| ++.....|..+|.
T Consensus 8 d~~~A~~~~~kaa~~g~~~a---~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~ 66 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMFG---CLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYE 66 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTTH---HHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhh---hhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhh
Confidence 56677777777766653221 11111 223345666666666666655 3333444444443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.30 E-value=0.12 Score=40.79 Aligned_cols=48 Identities=10% Similarity=-0.093 Sum_probs=38.9
Q ss_pred hhhhHHHHHHHHHccCCCCc-hhHHHHHHHHHhCCCchHHHHHHHHHHh
Q 039792 714 NVELGRYAAEMAISIDPMDS-GSYTLLSNTFACNSMWADAKQVRKKMDL 761 (819)
Q Consensus 714 ~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 761 (819)
+.+.|..+++.++..+|.+. ..++.|+-+|++.|++++|.+.++++.+
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 66777778888888788664 6778888889999999999988888765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.68 E-value=1 Score=36.19 Aligned_cols=110 Identities=9% Similarity=-0.015 Sum_probs=65.7
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCChHhHHHHHHHHHh----CCChHHHHHHH
Q 039792 577 SLKHGQQFHNHLIKLGLDFDSFITSALIDMYAKCGSLEDAYETFGSTT-WKDVACWNSMICTNAH----HGEPMKALLLF 651 (819)
Q Consensus 577 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~ 651 (819)
++++|..++.+..+.|.. .....|.. ....+.++|.+.+++.. ..++.+...|...|.. ..+.++|+++|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~ 82 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLVS--NSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 82 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHHT--CTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhcc--ccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHH
Confidence 577888888888887732 23333332 33456777777777655 4455565556555544 34577777877
Q ss_pred HHHHHcCCCCCchhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCC
Q 039792 652 REMIIEGLEPNYITFVGVLSACSH----AGLIEDGLDHFQSMAGFGI 694 (819)
Q Consensus 652 ~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~ 694 (819)
++..+.| +......|...|.+ ..+.++|.++|++..+.|.
T Consensus 83 ~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 83 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 7777755 22333344444443 3466777777776666553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.74 E-value=2.8 Score=32.44 Aligned_cols=64 Identities=16% Similarity=0.086 Sum_probs=48.9
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 039792 530 WNAMLLGYTQQLENEEAIKLYLELLLSQQRPNEFTFAALITAASNLGSLKHGQQFHNHLIKLGLD 594 (819)
Q Consensus 530 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 594 (819)
.+.-++.+.++|+-+.-.++++++.+. -+|++.....+..+|.+.|+..++.+++.++.+.|.+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 344567777888888888888887664 4777888888888888888888888888888888764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=89.95 E-value=3.4 Score=32.03 Aligned_cols=65 Identities=9% Similarity=-0.005 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHccCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHhCCCc
Q 039792 700 HYASVVSLLGRNVWNVELGRYAAEMAISIDPMDSGSYTLLSNTFACNSMWADAKQVRKKMDLDGLM 765 (819)
Q Consensus 700 ~y~~li~~l~r~~w~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 765 (819)
+...-+|.+-.++ .-+.-....+.+++-+.-+|.....++++|-+.|...++-+++.+.-++|+|
T Consensus 88 ~vdlALd~lv~~~-kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 88 HVNKALDILVIQG-KRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 3333344443331 3344445566667777778999999999999999999999999999999986
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.90 E-value=12 Score=36.96 Aligned_cols=352 Identities=9% Similarity=-0.039 Sum_probs=163.4
Q ss_pred hhHHHHHHHcCCChhhHHHHHhccCCCCcchHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHhcCCC
Q 039792 90 ANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKGYGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGG 169 (819)
Q Consensus 90 ~~~ll~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 169 (819)
-..-+..+.+.+++......+..-+ .+...--....+..+.|+..+|...+......+...|+
T Consensus 75 r~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~---------------- 137 (450)
T d1qsaa1 75 QSRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN---------------- 137 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT----------------
T ss_pred HHHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch----------------
Confidence 3445667788888888777665432 23333345667788899999999998887554444443
Q ss_pred CCCCchhHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCChhHHHHHHhcCCCCCeeeHHHHHHHHHhcCCchhHHHHHHH
Q 039792 170 GGDGGNVGEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVKSGRSDLSLNLFNQ 249 (819)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 249 (819)
.+..++....+.|. .+...+-.-+......|+...|..+...++..........+..... ...+......
T Consensus 138 ------~c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~ 207 (450)
T d1qsaa1 138 ------ACDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART 207 (450)
T ss_dssp ------HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH
T ss_pred ------HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc
Confidence 33344443333332 2333333444555566778888877777654443333444433321 2222222111
Q ss_pred HHHCCCCCChhhHHHHHHHhhcc--CChhhHHHHHHHHHHhCCCCchh---HHHHHHHHhHhCCChHHHHHHHhcccC--
Q 039792 250 MRETDVVHDKYLLSSVLSACSML--QFVGGGKQIHAHVLRRGMGMDVS---VINVLMDFYSKCGRVKMARRLFDEIEV-- 322 (819)
Q Consensus 250 m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~-- 322 (819)
..++......+..++.+. .+.+.+..++............. ....+.......+..+.+...++....
T Consensus 208 -----~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 282 (450)
T d1qsaa1 208 -----TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS 282 (450)
T ss_dssp -----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC
T ss_pred -----CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc
Confidence 111222222222222221 24444555544444332211111 111122222333444555554443331
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhcCCcchhhHHHHHHHHHHcCCCCChhHHhHHh
Q 039792 323 KNIISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLV 402 (819)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 402 (819)
.+.....-.+......+++..+...+..|.... .-...-.--+-.+....|+.+.|...+..+... ++ .|.-|.
T Consensus 283 ~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LA 356 (450)
T d1qsaa1 283 QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA 356 (450)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH
T ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHH
Confidence 122222223333445556666666665553211 111112223344555566666666666655421 22 222221
Q ss_pred hhhhcCC-CHHHHHHHHHhcCCCCcch-----HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCc
Q 039792 403 DMYAKCD-SLTEARKVFDVMADRNVVS-----YNAMIEGYSKEEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFS 476 (819)
Q Consensus 403 ~~~~~~g-~~~~A~~~~~~m~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 476 (819)
..-.... .+.. .......... --.-+..+...|+...|...+..+... .+......+.....+.|.
T Consensus 357 a~~Lg~~~~~~~-----~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~ 428 (450)
T d1qsaa1 357 AQRIGEEYELKI-----DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQW 428 (450)
T ss_dssp HHHTTCCCCCCC-----CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCCCCCc-----CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCC
Confidence 1100000 0000 0000000000 112345566778888888888777643 244555666677777888
Q ss_pred hHhHHHHHHHH
Q 039792 477 LESSKQIHGLI 487 (819)
Q Consensus 477 ~~~a~~i~~~~ 487 (819)
.+.+.......
T Consensus 429 ~~~aI~a~~~~ 439 (450)
T d1qsaa1 429 WDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHHT
T ss_pred hhHHHHHHHHH
Confidence 88777665443
|