Citrus Sinensis ID: 039800
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 576 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SQZ0 | 584 | Cationic amino acid trans | yes | no | 0.972 | 0.958 | 0.746 | 0.0 | |
| Q9LZ20 | 583 | Cationic amino acid trans | no | no | 0.968 | 0.957 | 0.750 | 0.0 | |
| Q84MA5 | 594 | Cationic amino acid trans | no | no | 0.953 | 0.924 | 0.439 | 1e-135 | |
| O64759 | 569 | Cationic amino acid trans | no | no | 0.927 | 0.938 | 0.444 | 1e-122 | |
| Q9SHH0 | 590 | Cationic amino acid trans | no | no | 0.932 | 0.910 | 0.413 | 1e-109 | |
| Q8GYB4 | 609 | Cationic amino acid trans | no | no | 0.878 | 0.830 | 0.302 | 8e-69 | |
| Q8W4K3 | 600 | Cationic amino acid trans | no | no | 0.668 | 0.641 | 0.349 | 2e-67 | |
| P30825 | 629 | High affinity cationic am | yes | no | 0.894 | 0.818 | 0.296 | 2e-65 | |
| Q9ASS7 | 635 | Cationic amino acid trans | no | no | 0.651 | 0.590 | 0.355 | 3e-64 | |
| Q9C5D6 | 569 | Cationic amino acid trans | no | no | 0.862 | 0.873 | 0.327 | 1e-63 |
| >sp|Q9SQZ0|CAAT7_ARATH Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis thaliana GN=CAT7 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/571 (74%), Positives = 489/571 (85%), Gaps = 11/571 (1%)
Query: 2 ETHPRNSSFSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDL 61
H ++SFSS YL +L+ TP+R SRRA+SVSTSY+EMSRVRA SG MR+TLRWYDL
Sbjct: 6 RNHDGDTSFSSLRVYLNSLSDTPSRFSRRAVSVSTSYDEMSRVRAVSGEQMRRTLRWYDL 65
Query: 62 VCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGA 121
+ GIGGM+GAGVFVTTGRASRL AGP+IV+SYAIAGLCALLSAFCYTEFAV +PVAGGA
Sbjct: 66 IGLGIGGMIGAGVFVTTGRASRLYAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGA 125
Query: 122 FSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDG 181
FSY+R+TFGEF AF+TG+NLI++YV+SNAAV+RGF +Y G+A G+ T++WR V GLP+G
Sbjct: 126 FSYIRITFGEFPAFITGANLIMDYVLSNAAVSRGFTAYLGSAFGISTSEWRFIVSGLPNG 185
Query: 182 FNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK--------- 232
FNEID +AV VVL +TFVICYSTR+SS VNM+LT LHI FI FVI+MGF K
Sbjct: 186 FNEIDPIAVIVVLAVTFVICYSTRESSKVNMVLTALHIAFIVFVIVMGFSKGDVKNLTRP 245
Query: 233 -DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVT 291
+P+NPSGFFP+G GVFNGAAMVYLSYIGYDAVSTMAEEVK+PVKDIP+G+SGSV IV
Sbjct: 246 DNPENPSGFFPFGVSGVFNGAAMVYLSYIGYDAVSTMAEEVKDPVKDIPMGISGSVAIVI 305
Query: 292 VLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351
VLYCLMA SMSML+PYD+IDAEAP+S AFS KS+GW+WV+ V+G+GASFGILTSL+VAML
Sbjct: 306 VLYCLMAISMSMLLPYDLIDAEAPYSAAFS-KSEGWEWVTRVVGIGASFGILTSLIVAML 364
Query: 352 GQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGT 411
GQARYMCVIGRS VVP WFA+VHPKTSTPVNASAFLGIFTA +ALFTDL VLLNLVSIGT
Sbjct: 365 GQARYMCVIGRSRVVPIWFAKVHPKTSTPVNASAFLGIFTAVLALFTDLNVLLNLVSIGT 424
Query: 412 LFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGA 471
LFVFYMVANAVI+RRYV +G T P PTLSFL LFS+TSI+FTL+W P K F+LGA
Sbjct: 425 LFVFYMVANAVIFRRYVTVGYTEPWPTLSFLCLFSITSILFTLVWQLAPSGPPKWFILGA 484
Query: 472 SAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFS 531
S + AIA++QIFHCVVPQA+ PEFWGVPLMPW PC+SIFLNIFLLGSLD PSY+RFGFFS
Sbjct: 485 STVTAIAIVQIFHCVVPQARIPEFWGVPLMPWTPCVSIFLNIFLLGSLDAPSYIRFGFFS 544
Query: 532 ALAVLVYLLYSVHASFDAEEDGSFGQKSCES 562
L VLVY+ YSVHAS+DAE DGS K ES
Sbjct: 545 GLVVLVYVFYSVHASYDAEGDGSLDFKDVES 575
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Permease involved in the transport of the cationic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana GN=CAT6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/569 (75%), Positives = 483/569 (84%), Gaps = 11/569 (1%)
Query: 10 FSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGIGGM 69
FSS YL +L+ TP+R+SRRA+SVSTS +EMSRVRA SG MR+TLRWYDL+ GIGGM
Sbjct: 15 FSSLRVYLNSLSATPSRLSRRAISVSTSSDEMSRVRAVSGEQMRRTLRWYDLIGLGIGGM 74
Query: 70 VGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTF 129
VGAGVFVTTGRASRL+AGP+IV+SYAIAGLCALLSAFCYTEFAV +PVAGGAFSY+R+TF
Sbjct: 75 VGAGVFVTTGRASRLDAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIRITF 134
Query: 130 GEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLA 189
GEF AF TG+NL+++YVMSNAAV+R F +Y GTA G+ T+KWR V GLP GFNEID +A
Sbjct: 135 GEFPAFFTGANLVMDYVMSNAAVSRSFTAYLGTAFGISTSKWRFVVSGLPKGFNEIDPVA 194
Query: 190 VAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----------DPKNPSG 239
V VVLVIT +IC STR+SS VNMI+T HI FI FVI+MGF K +P++PSG
Sbjct: 195 VLVVLVITVIICCSTRESSKVNMIMTAFHIAFIFFVIVMGFIKGDSKNLSSPANPEHPSG 254
Query: 240 FFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAA 299
FFP+GA GVFNGAAMVYLSYIGYDAVSTMAEEV+NPVKDIP+GVSGSV IVTVLYCLMA
Sbjct: 255 FFPFGAAGVFNGAAMVYLSYIGYDAVSTMAEEVENPVKDIPVGVSGSVAIVTVLYCLMAV 314
Query: 300 SMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCV 359
SMSML+PYD+ID EAPFS AF G S+GW+WV+ V+G+GASFGILTSLLVAMLGQARYMCV
Sbjct: 315 SMSMLLPYDLIDPEAPFSAAFRG-SNGWEWVTKVVGIGASFGILTSLLVAMLGQARYMCV 373
Query: 360 IGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVA 419
IGRS VVP WFA++HPKTSTPVNAS FLGIFTAA+ALFTDL VLLNLVSIGTLFVFYMVA
Sbjct: 374 IGRSRVVPFWFAKIHPKTSTPVNASTFLGIFTAALALFTDLNVLLNLVSIGTLFVFYMVA 433
Query: 420 NAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAV 479
NA+I+RRYV +G T P PTL FL LFS+TS++FTLIW VP K KAFMLGASA+VAIA+
Sbjct: 434 NALIFRRYVPVGPTKPWPTLCFLTLFSITSLVFTLIWKLVPEGKPKAFMLGASAVVAIAI 493
Query: 480 LQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYL 539
+ F CVVPQA+KPE WGVP MPW PC+SIFLNIFLLGSLD PSYVRFGFFS L VLVYL
Sbjct: 494 VLSFQCVVPQARKPELWGVPFMPWTPCVSIFLNIFLLGSLDAPSYVRFGFFSGLIVLVYL 553
Query: 540 LYSVHASFDAEEDGSFGQKSCESPKESAE 568
Y VHAS DAE +GSFG K + KE E
Sbjct: 554 FYGVHASSDAEANGSFGVKDGQVMKELIE 582
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Permease involved in the transport of the cationic neutral or acidic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84MA5|CAAT1_ARATH Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 253/576 (43%), Positives = 367/576 (63%), Gaps = 27/576 (4%)
Query: 7 NSSFSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGI 66
SF S YL+AL TP+R R ++ S +E++ ++A+SG +M+KTL W+DL+ FGI
Sbjct: 25 EESFQSMGNYLKALKETPSRFMDRIMTRSLDSDEINEMKARSGHEMKKTLTWWDLMWFGI 84
Query: 67 GGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126
G ++G+G+FV TG +R ++GPA+V+SY ++G+ A+LS FCYTEFAV++PVAGG+F+YLR
Sbjct: 85 GAVIGSGIFVLTGLEARNHSGPAVVLSYVVSGVSAMLSVFCYTEFAVEIPVAGGSFAYLR 144
Query: 127 VTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEID 186
V G+F AF+ N+ILEYV+ AAVAR + SYF T + +R+ V L + ++ +D
Sbjct: 145 VELGDFMAFIAAGNIILEYVVGGAAVARSWTSYFATLLNHKPEDFRIIVHKLGEDYSHLD 204
Query: 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK-DPKNPSGFFPYGA 245
+AV V +I + T+ SS N I +++H++ I FVI+ GF K D KN S F PYG
Sbjct: 205 PIAVGVCAIICVLAVVGTKGSSRFNYIASIIHMVVILFVIIAGFTKADVKNYSDFTPYGV 264
Query: 246 KGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLM 305
+GVF AA+++ +YIG+DAVSTMAEE KNP +DIPIG+ GS+++ TV YCLMA ++ ++
Sbjct: 265 RGVFKSAAVLFFAYIGFDAVSTMAEETKNPGRDIPIGLVGSMVVTTVCYCLMAVTLCLMQ 324
Query: 306 PYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSV 365
PY ID +APFS AFS + GW W ++ GA G+ T LLV +GQARYM I R+ +
Sbjct: 325 PYQQIDPDAPFSVAFS--AVGWDWAKYIVAFGALKGMTTVLLVGAIGQARYMTHIARAHM 382
Query: 366 VPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYR 425
+P W A+V+ KT TP+NA+ + TA IA FT L +L +L+S+ TLF+F VA A++ R
Sbjct: 383 MPPWLAQVNAKTGTPINATVVMLAATALIAFFTKLKILADLLSVSTLFIFMFVAVALLVR 442
Query: 426 RYVNLGTTNPQPT---LSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQI 482
RY G T+ + L FL L +S + W + +G V I L
Sbjct: 443 RYYVTGETSTRDRNKFLVFLGLILASSTATAVYWAL-----EEEGWIGYCITVPIWFLST 497
Query: 483 --FHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLL 540
+VPQA+ P+ WGVPL+PW+P SI +NIFLLGS+D S+VRF ++ + ++ Y+L
Sbjct: 498 VAMKFLVPQARAPKIWGVPLVPWLPSASIAINIFLLGSIDTKSFVRFAIWTGILLIYYVL 557
Query: 541 YSVHASFD--------------AEEDGSFGQKSCES 562
+ +HA++D AEE G SC +
Sbjct: 558 FGLHATYDTAKATLKEKQALQKAEEGGVVADNSCSA 593
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High-affinity permease involved in the transport of the cationic amino acids (e.g. arginine, lysine, histidine, citrulline, valine, and glutamate). Transport mostly basic amino-acids, and, to a lower extent neutral and acidic amino-acids. May function as a proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O64759|CAAT5_ARATH Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 244/549 (44%), Positives = 347/549 (63%), Gaps = 15/549 (2%)
Query: 7 NSSFSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGI 66
SF S +Y AL+ T +R R +S S E ++ +S +M++ L W+DLV FG
Sbjct: 19 EESFQSFGSYRAALSQTCSRFKNRLVSRSDDENERFELKKQSEHEMKRCLTWWDLVWFGF 78
Query: 67 GGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126
G ++GAG+FV TG+ + AGPAIV+SY ++GL A+LS FCYTEFAV++PVAGG+F+YLR
Sbjct: 79 GSVIGAGIFVLTGQEAHEQAGPAIVLSYVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLR 138
Query: 127 VTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEID 186
+ G+FAAF+T N++LE ++ AAVAR + SYF T + R+K D L GFN +D
Sbjct: 139 IELGDFAAFITAGNILLESIVGTAAVARAWTSYFATLLNRSPNALRIKTD-LSSGFNLLD 197
Query: 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGF-WKDPKNPSGFFPYGA 245
+AV V+ + STR +S++N I + ++ L I FVI+ GF D N + F P+G
Sbjct: 198 PIAVVVIAASATIASISTRKTSLLNWIASAINTLVIFFVIIAGFIHADTSNLTPFLPFGP 257
Query: 246 KGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLM 305
+GVF AA+VY +Y G+D+++TMAEE KNP +DIPIG+ GS+ I+TV+YCLMA S+SM+
Sbjct: 258 EGVFRAAAVVYFAYGGFDSIATMAEETKNPSRDIPIGLLGSMSIITVIYCLMALSLSMMQ 317
Query: 306 PYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSV 365
Y ID A +S AF +S G KW ++ +GA G+ T LLV LGQARY+ I R+ +
Sbjct: 318 KYTDIDPNAAYSVAF--QSVGMKWGKYLVALGALKGMTTVLLVGALGQARYVTHIARTHM 375
Query: 366 VPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYR 425
+P FA VHPKT TP+NA+ + I +A IA F+ L VL +L+SI TLF+F M+ A++ R
Sbjct: 376 IPPIFALVHPKTGTPINANLLVAIPSALIAFFSGLDVLASLLSISTLFIFTMMPIALLVR 435
Query: 426 RYVNLGTTNPQPTL----SFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQ 481
RY + P+ L + L V+S+ + W + K +G + V L
Sbjct: 436 RYY-VRQDTPRVHLIKLITCLLFVVVSSMGTSAYWGM----QRKGSWIGYTVTVPFWFLG 490
Query: 482 IFHCV--VPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYL 539
V VPQ + P+ WGVPL+PW+PC+SI NIFL+GSL ++VRFG + +L Y
Sbjct: 491 TLGIVFFVPQQRTPKVWGVPLVPWLPCLSIATNIFLMGSLGAMAFVRFGVCTLAMLLYYF 550
Query: 540 LYSVHASFD 548
L +HA+FD
Sbjct: 551 LLGLHATFD 559
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High-affinity permease involved in the transport of the cationic amino acids (e.g. arginine, and, to a lower extent, citrulline and glutamate). Transport mostly basic amino-acids, and, to a lower extent neutral and acidic amino-acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHH0|CAAT8_ARATH Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 227/549 (41%), Positives = 341/549 (62%), Gaps = 12/549 (2%)
Query: 9 SFSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGIGG 68
SF S S Y AL+ T R++ R LS S+ E+ R +S + MR+ L W+DL+ G
Sbjct: 38 SFQSFSTYKSALSATCPRLADRLLSRSSDAYELDAARRESENPMRRCLTWWDLLWLSFGS 97
Query: 69 MVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128
+VG+GVFV TG+ +R+ AGPA+V+SYAI+G+ ALLS CY EF V++PVAGG+FSYLRV
Sbjct: 98 VVGSGVFVITGQEARVGAGPAVVLSYAISGVSALLSVLCYAEFGVEIPVAGGSFSYLRVE 157
Query: 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVL 188
G+F AF+ N++LE ++ A + R ++SY + + + +R+KVD GF+ +D +
Sbjct: 158 LGDFIAFIAAGNILLEAMVGAAGLGRSWSSYLASLVKNDSDYFRIKVDSFAKGFDLLDPV 217
Query: 189 AVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGF-WKDPKNPSGFFPYGAKG 247
AVAV+LV + T+ +S +N+I +++ + I F++++GF N FFPYGAKG
Sbjct: 218 AVAVLLVANGIAMTGTKRTSWLNLITSMVTVCIIVFIVVVGFTHSKTSNLVPFFPYGAKG 277
Query: 248 VFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPY 307
V AA+VY SY G+D V+ MAEE + P +DIPIG+ GS+ ++TV+YCLMA +++M++ Y
Sbjct: 278 VVQSAAVVYWSYTGFDMVANMAEETEKPSRDIPIGLVGSMSMITVVYCLMALALTMMVKY 337
Query: 308 DMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVP 367
IDA A +S AF+ G KW ++G+ A G+ TSLLV LGQARY I RS ++P
Sbjct: 338 TEIDANAAYSVAFA--QIGMKWAKYLVGICALKGMTTSLLVGSLGQARYTTQIARSHMIP 395
Query: 368 AWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRY 427
WFA VHPKT TP+ A+ + I ++ I+ FT L VL ++ S TLF+F +VA A++ RRY
Sbjct: 396 PWFALVHPKTGTPIYATLLVTILSSIISFFTSLEVLSSVFSFATLFIFMLVAVALLVRRY 455
Query: 428 VNLGTTNPQPTLSFLFLFS----VTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIF 483
+ P+ L F +SI + +W+ K I I L +
Sbjct: 456 Y-VKDVTPEAGLLKFLGFLFLIIASSIGVSALWN--SGVKGWIAYTVTGVIWFIGTLGL- 511
Query: 484 HCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSV 543
++P+ + P+ WGVPL+PW+P SI +N+FL+GSL +++RF + + +L YL +
Sbjct: 512 -ALLPKYRVPKVWGVPLVPWLPSFSIAMNLFLIGSLGYVAFLRFIICTMVMLLYYLFVGL 570
Query: 544 HASFDAEED 552
HA++D
Sbjct: 571 HATYDVAHQ 579
|
Permease involved in the transport of the cationic neutral or acidic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GYB4|CAAT3_ARATH Cationic amino acid transporter 3, mitochondrial OS=Arabidopsis thaliana GN=CAT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (668), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 176/581 (30%), Positives = 299/581 (51%), Gaps = 75/581 (12%)
Query: 27 VSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNA 86
V R+ S E + + K L + L+ G+G +GAGV++ G +R ++
Sbjct: 8 VRRKQFDSSNGKAETHHHHQQ----LAKALTFPHLIAIGVGSTIGAGVYILVGTVAREHS 63
Query: 87 GPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYV 146
GPA+ +S+ IAG+ A LSAFCY E + P AG A+ Y + GE A+L G LILEY
Sbjct: 64 GPALALSFLIAGISAALSAFCYAELSSRFPSAGSAYHYSYICIGEGVAWLIGWALILEYT 123
Query: 147 MSNAAVARG----FASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICY 202
+ + VARG A FG +PT R ++ GL +D A +V ++T + C
Sbjct: 124 IGGSTVARGISPNLAMIFGGEDCLPTILARHQIPGLDI---VVDPCAAVLVFIVTGLCCL 180
Query: 203 STRDSSVVNMILTVLHILFIAFVILMGF-------WKDPKNPSGFFPYGAKGVFNGAAMV 255
++S+ I+T ++ + FVI+ G W + P+G+FPYG G+ G+A V
Sbjct: 181 GVKESTFAQGIVTTANVFVMIFVIVAGSYLCFKTGWVGYELPTGYFPYGVDGMLTGSATV 240
Query: 256 YLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAP 315
+ +YIG+D V++MAEEVKNP +D+P+G+ S+++ +LY +++ + L+PY +D + P
Sbjct: 241 FFAYIGFDTVASMAEEVKNPRRDLPLGIGISLLLCCLLYMMVSVVIVGLVPYYAMDPDTP 300
Query: 316 FSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHP 375
S AFS S G +W + +I +GA + ++L+ ++L Q R + + R ++P++F+ V+
Sbjct: 301 ISSAFS--SHGIQWAAYLINLGAVMALCSALMGSILPQPRILMAMARDGLLPSYFSYVNQ 358
Query: 376 KTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYV------- 428
+T P+N + G+ A +A F D++ L +VS+GTL F MVA +++ RYV
Sbjct: 359 RTQVPINGTITTGVCAAILAFFMDVSQLAGMVSVGTLVAFTMVAISLLIVRYVVPPDEVP 418
Query: 429 -----------NLGTT--NPQPTLSFL---------------------FLFSVTSIIFTL 454
++GT+ + QP L + F+ SI+FT
Sbjct: 419 LPSSLQENSSSHVGTSIRSKQPLLGKVDDSVVDKENAPGSWVLNKKNRRKFAGWSIMFTC 478
Query: 455 IWHFVPPCKSKAFML---------GASAIVAIAVLQIFHCVVPQAKKPEF-----WGVPL 500
I +F+ + +F+L G + + L + C+ + F + P
Sbjct: 479 IGNFLLSYAASSFLLPGLLRYSLCGVGGLFLLVGLIVLICIDQDDARHSFGHSGGFICPF 538
Query: 501 MPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLY 541
+P +P + I +N++LL +L ++VR + L V+VY+ Y
Sbjct: 539 VPLLPIVCILINMYLLVNLGAATWVRVSVWLFLGVVVYIFY 579
|
Permease involved in the transport of the cationic neutral or acidic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W4K3|CAAT4_ARATH Cationic amino acid transporter 4, vacuolar OS=Arabidopsis thaliana GN=CAT4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (657), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 140/401 (34%), Positives = 234/401 (58%), Gaps = 16/401 (3%)
Query: 39 EEMSRVRAKSGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAG 98
+ + ++ + K L DLV G+G +GAGV++ G +R + GPA+ +S+ IAG
Sbjct: 11 DSVHLIKNDGPHQLAKKLSAVDLVAIGVGTTIGAGVYILVGTVAREHTGPALAVSFFIAG 70
Query: 99 LCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARG--- 155
+ A LSA CY E A P AG A+ Y + GE A+L G L+L+Y + +A+ARG
Sbjct: 71 VAAALSACCYAELASRCPSAGSAYHYAYICLGEGIAWLVGWALVLDYTIGGSAIARGITP 130
Query: 156 -FASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMIL 214
AS+FG +P R + G+ G +D A +++++T ++C+ ++SS V I+
Sbjct: 131 NLASFFGGLDNLPVFLARQTIPGV--GI-VVDPCAALLIMIVTILLCFGIKESSTVQAIV 187
Query: 215 TVLHILFIAFVILMGFWKDPKN-------PSGFFPYGAKGVFNGAAMVYLSYIGYDAVST 267
T +++ + F+I++G + K PSG+FP+G G+ G+A+V+ SYIG+D V++
Sbjct: 188 TSVNVCTLVFIIVVGGYLACKTGWVGYDLPSGYFPFGLNGILAGSAVVFFSYIGFDTVTS 247
Query: 268 MAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGW 327
AEEVKNP +D+P+G+ +++I +LY L++ + L+PY ++ + P S AF G
Sbjct: 248 TAEEVKNPQRDLPLGIGIALLICCILYMLLSVVIVGLVPYYSLNPDTPISSAFG--DSGM 305
Query: 328 KWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFL 387
+W + ++ GA + SLL ++L Q R + R ++PA+F+ + P+T PV ++ +
Sbjct: 306 QWAAYILTTGAITALCASLLGSLLAQPRIFMAMARDGLLPAFFSEISPRTQVPVKSTIAI 365
Query: 388 GIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYV 428
G+ AA+A F D+ L +VS+GTL F VA V+ RYV
Sbjct: 366 GVLAAALAFFMDVAQLSEMVSVGTLMAFTAVAVCVLVLRYV 406
|
Permease involved in the transport of the cationic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|P30825|CTR1_HUMAN High affinity cationic amino acid transporter 1 OS=Homo sapiens GN=SLC7A1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 184/621 (29%), Positives = 307/621 (49%), Gaps = 106/621 (17%)
Query: 39 EEMSRVR----AKSGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISY 94
++M R + ++ + + + L +DLV G+G +GAGV+V G +R NAGPAIVIS+
Sbjct: 11 QQMLRRKVVDCSREETRLSRCLNTFDLVALGVGSTLGAGVYVLAGAVARENAGPAIVISF 70
Query: 95 AIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVAR 154
IA L ++L+ CY EF +P G A+ Y VT GE AF+TG NLIL Y++ ++VAR
Sbjct: 71 LIAALASVLAGLCYGEFGARVPKTGSAYLYSYVTVGELWAFITGWNLILSYIIGTSSVAR 130
Query: 155 GFASYFGTAIGVPTAKW---RLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211
+++ F IG P ++ + ++ D+ AV ++L++T ++ ++S++VN
Sbjct: 131 AWSATFDELIGRPIGEFSRTHMTLNAPGVLAENPDIFAVIIILILTGLLTLGVKESAMVN 190
Query: 212 MILTVLHILFIAFVILMGF-------WK----DPKNPS-----------------GFFPY 243
I T +++L + F+++ GF W+ D N S GF P+
Sbjct: 191 KIFTCINVLVLGFIMVSGFVKGSVKNWQLTEEDFGNTSGRLCLNNDTKEGKPGVGGFMPF 250
Query: 244 GAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSM 303
G GV +GAA + +++G+D ++T EEVKNP K IP+G+ S++I + Y ++A++++
Sbjct: 251 GFSGVLSGAATCFYAFVGFDCIATTGEEVKNPQKAIPVGIVASLLICFIAYFGVSAALTL 310
Query: 304 LMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRS 363
+MPY +D +P AF K GW+ + VG+ + SLL +M R + +
Sbjct: 311 MMPYFCLDNNSPLPDAF--KHVGWEGAKYAVAVGSLCALSASLLGSMFPMPRVIYAMAED 368
Query: 364 SVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVI 423
++ + A V+ +T TP+ A+ G A +A DL L++L+SIGTL + +VA V+
Sbjct: 369 GLLFKFLANVNDRTKTPIIATLASGAVAAVMAFLFDLKDLVDLMSIGTLLAYSLVAACVL 428
Query: 424 YRRYV-----------------------NLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVP 460
RY L +TN L FL + S+ L +
Sbjct: 429 VLRYQPEQPNLVYQMASTSDELDPADQNELASTN-DSQLGFLPEAEMFSLKTILSPKNME 487
Query: 461 PCKSKAFMLGASAIVAIAVLQIFHCVV--------------------------------- 487
P K ++ S + IAVL I C+V
Sbjct: 488 PSKISGLIVNISTSL-IAVLIITFCIVTVLGREALTKGALWAVFLLAGSALLCAVVTGVI 546
Query: 488 ---PQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVY----LL 540
P++K + VP +P +P +SIF+N++L+ LD ++VRF + + ++Y L
Sbjct: 547 WRQPESKTKLSFKVPFLPVLPILSIFVNVYLMMQLDQGTWVRFAVWMLIGFIIYFGYGLW 606
Query: 541 YSVHASFDAEE----DGSFGQ 557
+S AS DA++ DG+ Q
Sbjct: 607 HSEEASLDADQARTPDGNLDQ 627
|
High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor. Homo sapiens (taxid: 9606) |
| >sp|Q9ASS7|CAAT2_ARATH Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (628), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 232/391 (59%), Gaps = 16/391 (4%)
Query: 49 GSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCY 108
G + + L LV G+G +GAGV++ G +R ++GP++ +S+ IAG+ A LSAFCY
Sbjct: 37 GHQLARALTVPHLVAIGVGATIGAGVYILVGTVAREHSGPSLALSFLIAGIAAGLSAFCY 96
Query: 109 TEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARG----FASYFGTAI 164
E + P AG A+ Y + GE A++ G LILEY + +AVARG A FG
Sbjct: 97 AELSSRCPSAGSAYHYSYICVGEGVAWIIGWALILEYTIGGSAVARGISPNLALIFGGED 156
Query: 165 GVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAF 224
G+P R ++ GL +D A +V V+T ++C ++S+ I+T +++ + F
Sbjct: 157 GLPAILARHQIPGLD---IVVDPCAAILVFVVTGLLCMGIKESTFAQGIVTAVNVCVLLF 213
Query: 225 VIL----MGF---WKDPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVK 277
VI+ +GF W + P+GFFP+G G+F G+A V+ ++IG+D+V++ AEEV+NP +
Sbjct: 214 VIVAGSYLGFKTGWPGYELPTGFFPFGVDGMFAGSATVFFAFIGFDSVASTAEEVRNPQR 273
Query: 278 DIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVG 337
D+PIG+ ++++ LY +++ + L+PY +D + P S AF+ S +W +I +G
Sbjct: 274 DLPIGIGLALLLCCSLYMMVSIVIVGLIPYYAMDPDTPISSAFA--SHDMQWAVYLITLG 331
Query: 338 ASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF 397
A + ++L+ A+L Q R + + R ++P+ F+ ++ +T PV A+ G+ A +A F
Sbjct: 332 AVMALCSALMGALLPQPRILMAMARDGLLPSIFSDINKRTQVPVKATVATGLCAATLAFF 391
Query: 398 TDLTVLLNLVSIGTLFVFYMVANAVIYRRYV 428
D++ L +VS+GTL F MVA +V+ RYV
Sbjct: 392 MDVSQLAGMVSVGTLLAFTMVAISVLILRYV 422
|
Permease involved in the transport of the cationic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C5D6|CAAT9_ARATH Cationic amino acid transporter 9, chloroplastic OS=Arabidopsis thaliana GN=CAT9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 170/519 (32%), Positives = 278/519 (53%), Gaps = 22/519 (4%)
Query: 39 EEMSRVRAKSGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAG 98
+ VR+ SG + + L +DL+ G+G +GAGVFV TG +R +AGP + IS+ +AG
Sbjct: 35 SSQTAVRSTSGDSLVRRLGLFDLILLGVGASIGAGVFVVTGTVAR-DAGPGVTISFLLAG 93
Query: 99 LCALLSAFCYTEFAVDMP-VAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFA 157
+L+A CY E + P V GGA+ Y F E AFL L+L+Y + A+++R A
Sbjct: 94 ASCVLNALCYAELSSRFPAVVGGAYMYSYSAFNEITAFLVFVQLMLDYHIGAASISRSLA 153
Query: 158 SYFGTAIGV-PTAK-----WRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211
SY + + P K W L G +++LA ++ ++T V+C R+SS VN
Sbjct: 154 SYAVALLELFPALKGSIPLWMGSGKELLGGLLSLNILAPILLALLTLVLCQGVRESSAVN 213
Query: 212 MILTVLHILFIAFVILMG-FWKDPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAE 270
++T ++ + VI G F D N S F P G K V GA +V+ SY+G+DAV+ AE
Sbjct: 214 SVMTATKVVIVLVVICAGAFEIDVANWSPFAPNGFKAVLTGATVVFFSYVGFDAVANSAE 273
Query: 271 EVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWV 330
E KNP +D+PIG+ GS+++ LY + ++ ++P+ ++ +AP + AFS K G K+V
Sbjct: 274 ESKNPQRDLPIGIMGSLLVCISLYIGVCLVLTGMVPFSLLSEDAPLAEAFSSK--GMKFV 331
Query: 331 SNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIF 390
S +I +GA G+ T+LLV + Q+R +GR ++P+ F+R+HP TP+++ + GI
Sbjct: 332 SILISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFSRIHPTLHTPLHSQIWCGIV 391
Query: 391 TAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIY--------RRYVNLGTTNPQPTLSFL 442
+A ++ L +++S+GTL + +VA V+ R N T++ Q + L
Sbjct: 392 AGVLAGIFNVHSLSHILSVGTLTGYSVVAACVVALRLNDKKDRESSNRWTSSWQEGVICL 451
Query: 443 FLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMP 502
+ + + + + F S F+L + + +A + + + P +P
Sbjct: 452 VIIACSGFGAGVFYRF---SASVIFILLSVGVAVVASAVLHYRQAYALPLGSGFSCPGVP 508
Query: 503 WIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLY 541
+P + IF NIFL L +++RF S LA VY LY
Sbjct: 509 IVPSVCIFFNIFLFAQLHYEAWIRFVVVSVLATAVYALY 547
|
Permease involved in the transport of the cationic amino acids. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 576 | ||||||
| 224113419 | 600 | cationic amino acid transporter [Populus | 0.977 | 0.938 | 0.802 | 0.0 | |
| 225464416 | 586 | PREDICTED: high affinity cationic amino | 0.989 | 0.972 | 0.780 | 0.0 | |
| 255549464 | 576 | cationic amino acid transporter, putativ | 0.970 | 0.970 | 0.777 | 0.0 | |
| 356574163 | 587 | PREDICTED: low affinity cationic amino a | 0.973 | 0.955 | 0.776 | 0.0 | |
| 358346286 | 623 | High affinity cationic amino acid transp | 0.993 | 0.918 | 0.703 | 0.0 | |
| 296084466 | 536 | unnamed protein product [Vitis vinifera] | 0.902 | 0.970 | 0.785 | 0.0 | |
| 15228334 | 584 | cationic amino acid transporter 7 [Arabi | 0.972 | 0.958 | 0.746 | 0.0 | |
| 297806457 | 580 | ATCAT6/CAT6 [Arabidopsis lyrata subsp. l | 0.963 | 0.956 | 0.757 | 0.0 | |
| 15238312 | 583 | cationic amino acid transporter 6 [Arabi | 0.968 | 0.957 | 0.750 | 0.0 | |
| 297829610 | 584 | hypothetical protein ARALYDRAFT_317861 [ | 0.972 | 0.958 | 0.740 | 0.0 |
| >gi|224113419|ref|XP_002316491.1| cationic amino acid transporter [Populus trichocarpa] gi|222865531|gb|EEF02662.1| cationic amino acid transporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/588 (80%), Positives = 522/588 (88%), Gaps = 25/588 (4%)
Query: 14 SAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGIGGMVGAG 73
++Y++ALA TPAR +RRA SVSTSYEEMSRV+A+SGSDM++TLRWYDLV FGIGGMVGAG
Sbjct: 13 NSYIQALAQTPARFARRAGSVSTSYEEMSRVKARSGSDMQRTLRWYDLVGFGIGGMVGAG 72
Query: 74 VFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFA 133
VFVTTGRASR+ GP+++ISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFA
Sbjct: 73 VFVTTGRASRVCTGPSVIISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFA 132
Query: 134 AFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVV 193
AFLTG+NLI++YVMSNAAVAR F +Y G+AIG+ T+KWR+ V LPDGFNEID+ AV VV
Sbjct: 133 AFLTGANLIMDYVMSNAAVARSFTAYLGSAIGISTSKWRVVVHVLPDGFNEIDIFAVLVV 192
Query: 194 LVITFVICYS--------------TRDSSVVNMILTVLHILFIAFVILMGFWK------- 232
L IT +ICYS TR+SSVVNM+LT LHILFI FVILMGFWK
Sbjct: 193 LAITLIICYSFRLLNMTSLFLVDSTRESSVVNMVLTALHILFIGFVILMGFWKGDWKNFT 252
Query: 233 ---DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVII 289
DPKNPSGFFP+GA GVFNGAAMVYLSYIGYDAVST+AEEV NPVKDIPIGVSGSVII
Sbjct: 253 EPADPKNPSGFFPFGAPGVFNGAAMVYLSYIGYDAVSTLAEEVHNPVKDIPIGVSGSVII 312
Query: 290 VTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVA 349
VTVLYCLM+ASMSML+PYDMIDA+APFS AF GKSDGWKWVSNVIG+GASFGILTSLLVA
Sbjct: 313 VTVLYCLMSASMSMLLPYDMIDADAPFSAAFRGKSDGWKWVSNVIGIGASFGILTSLLVA 372
Query: 350 MLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSI 409
MLGQARYMCVIGRS+VVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDL VLLNLVSI
Sbjct: 373 MLGQARYMCVIGRSNVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLNVLLNLVSI 432
Query: 410 GTLFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFML 469
GTLFVFYMVANAV+YRRYV +GTTNP PTL+FL FS+TSI+FTLIWHF+P K KAFML
Sbjct: 433 GTLFVFYMVANAVVYRRYVAIGTTNPWPTLAFLCSFSLTSILFTLIWHFMPQGKGKAFML 492
Query: 470 GASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGF 529
GA A++AIA++Q+FHC+VPQA+KPEFWGVPLMPWIPC+SIFLNIFLLGSL GPSYVRF F
Sbjct: 493 GACAVIAIAIIQLFHCLVPQARKPEFWGVPLMPWIPCVSIFLNIFLLGSLGGPSYVRFVF 552
Query: 530 FSALAVLVYLLYSVHASFDAEEDGSFGQKSCESPKESAES-EDPSLKV 576
FSALAVLVY+LYSVHASFDAE +GSFGQK+ KES ES +DPS KV
Sbjct: 553 FSALAVLVYVLYSVHASFDAEAEGSFGQKNGGILKESGESDQDPSFKV 600
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464416|ref|XP_002269556.1| PREDICTED: high affinity cationic amino acid transporter 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/582 (78%), Positives = 514/582 (88%), Gaps = 12/582 (2%)
Query: 1 METHPRNSSFSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYD 60
M+TH +SSFSS +AY RALA TP+R++RRA SVSTS+EEMSRVRA+SGSDM++ LRW+D
Sbjct: 1 MDTHG-SSSFSSFTAYARALAQTPSRLARRACSVSTSFEEMSRVRARSGSDMQRNLRWFD 59
Query: 61 LVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGG 120
LV FG+GGMVGAGVFVTTGRASRL AGPA+V+SYAIAG+CALLSAFCYTEFAVDMPVAGG
Sbjct: 60 LVGFGLGGMVGAGVFVTTGRASRLYAGPAVVLSYAIAGICALLSAFCYTEFAVDMPVAGG 119
Query: 121 AFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPD 180
AFSYLRVTFGEFAAFLTG+NL+++YV+SNAAVAR F +Y GTAIG PT KWR V GLP
Sbjct: 120 AFSYLRVTFGEFAAFLTGANLVMDYVLSNAAVARSFTAYLGTAIGFPTTKWRFTVSGLPK 179
Query: 181 GFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK-------D 233
GFNEID++AVAVVL+IT +ICYSTR+SSVVNM+LT +HILFIAFVI++GFW+ +
Sbjct: 180 GFNEIDLVAVAVVLIITLIICYSTRESSVVNMVLTAMHILFIAFVIVVGFWRGDWKNFTE 239
Query: 234 PKNPS----GFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVII 289
P +P GFFP+GA GVFNGAAMVYLSYIGYDAVST+AEEV+NPVKDIPIGVSGSV++
Sbjct: 240 PADPRRHQGGFFPFGASGVFNGAAMVYLSYIGYDAVSTLAEEVRNPVKDIPIGVSGSVML 299
Query: 290 VTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVA 349
VT+LYCLMAASMS L+PYD ID EAPFS AF G+S+GWKWVSNVIG GASFGILTSL+VA
Sbjct: 300 VTILYCLMAASMSKLLPYDAIDPEAPFSAAFRGQSNGWKWVSNVIGAGASFGILTSLMVA 359
Query: 350 MLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSI 409
MLGQARYMCVIGRS VVP+WFARVH KT TPVNASAFLGIFTAAIA+FTDL VLLNLVSI
Sbjct: 360 MLGQARYMCVIGRSKVVPSWFARVHHKTCTPVNASAFLGIFTAAIAVFTDLNVLLNLVSI 419
Query: 410 GTLFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFML 469
GTLFVFYMVANAVIYRRYV++G TNP PTLSFL FS+TSIIFTLIWHF P K ML
Sbjct: 420 GTLFVFYMVANAVIYRRYVSVGATNPWPTLSFLVSFSLTSIIFTLIWHFAAPGHPKEVML 479
Query: 470 GASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGF 529
GA +VA+A+LQ+FHC+VPQ +KPE WGVPLMPWIP ISIFLNIFLLGSLD PSYVRFG+
Sbjct: 480 GACTVVAVAILQMFHCMVPQVRKPEHWGVPLMPWIPSISIFLNIFLLGSLDRPSYVRFGY 539
Query: 530 FSALAVLVYLLYSVHASFDAEEDGSFGQKSCESPKESAESED 571
FSALAVLVY+LYSVHASFDA+EDG + QK+ E PK+S S D
Sbjct: 540 FSALAVLVYVLYSVHASFDAQEDGYYIQKNAEIPKDSEASVD 581
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549464|ref|XP_002515785.1| cationic amino acid transporter, putative [Ricinus communis] gi|223545113|gb|EEF46624.1| cationic amino acid transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/580 (77%), Positives = 504/580 (86%), Gaps = 21/580 (3%)
Query: 8 SSFSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGIG 67
SSFSS +YL+AL TP R++ RA SVSTSYEEMSRV+A+SGS+M+K+LRW+DLVCFGIG
Sbjct: 7 SSFSSFRSYLQALGQTPTRLACRAGSVSTSYEEMSRVKARSGSEMQKSLRWHDLVCFGIG 66
Query: 68 GMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 127
GMVGAGVFVTTGRASRL AGPA+V+SYAIAGLCALLSAFCYTEFAVDMPVAGG
Sbjct: 67 GMVGAGVFVTTGRASRLYAGPAVVVSYAIAGLCALLSAFCYTEFAVDMPVAGG------- 119
Query: 128 TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDV 187
EFAAFLTG+NLI++YVMSNAAVARGF +YF AIG+ T+KWRL V LP+GFNEID+
Sbjct: 120 ---EFAAFLTGANLIMDYVMSNAAVARGFTAYFCAAIGMSTSKWRLVVHALPNGFNEIDM 176
Query: 188 LAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWKDP----------KNP 237
+AV VVL IT +ICYSTR SSVVNM+LTVLHI+FI FVI+MGFWK +P
Sbjct: 177 VAVLVVLAITLIICYSTRQSSVVNMVLTVLHIMFILFVIVMGFWKGQWKNFTAPAYSNHP 236
Query: 238 SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLM 297
SGFFP+GA GVFNGAA+VYLSYIGYDAVST+AEEV NPV DIPIGVSGSV +VTVLYCLM
Sbjct: 237 SGFFPFGAPGVFNGAALVYLSYIGYDAVSTLAEEVHNPVNDIPIGVSGSVALVTVLYCLM 296
Query: 298 AASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYM 357
AASMSML+PYD+IDAEAPFS AF GKSDGW+WVSNVIGVGASFGILTSLLV+MLGQARYM
Sbjct: 297 AASMSMLLPYDLIDAEAPFSAAFKGKSDGWEWVSNVIGVGASFGILTSLLVSMLGQARYM 356
Query: 358 CVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYM 417
CVIGRSSVVPAWFARVHP+TSTPVNASAFLGIFTAAIALFTDL VLLNLVSIGTLFVFYM
Sbjct: 357 CVIGRSSVVPAWFARVHPRTSTPVNASAFLGIFTAAIALFTDLNVLLNLVSIGTLFVFYM 416
Query: 418 VANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAI 477
VANAVIYRRYV +GTT P PTLSFL FS TS++FTLIWHF+P K KAFMLGA + AI
Sbjct: 417 VANAVIYRRYVAIGTTKPWPTLSFLCSFSFTSLLFTLIWHFMPQGKPKAFMLGACTMTAI 476
Query: 478 AVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLV 537
A++Q+F+C+VPQA+KPEFWGVPLMPWIPC+SIFLNIFLLGSLDGPSY+RF FFS LAVLV
Sbjct: 477 AIIQVFNCMVPQARKPEFWGVPLMPWIPCVSIFLNIFLLGSLDGPSYLRFAFFSGLAVLV 536
Query: 538 YLLYSVHASFDAEEDGSFGQKSCE-SPKESAESEDPSLKV 576
Y+LYSVHASFDA+ +G K+ + KES ESEDP KV
Sbjct: 537 YVLYSVHASFDAQREGCLSLKNGDIILKESGESEDPGSKV 576
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574163|ref|XP_003555221.1| PREDICTED: low affinity cationic amino acid transporter 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/573 (77%), Positives = 499/573 (87%), Gaps = 12/573 (2%)
Query: 15 AYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGIGGMVGAGV 74
AYL AL+HTP R++ RALSVSTSY+EMS+VRA+SG+ MRKTLRW+DLV GIGGMVGAGV
Sbjct: 16 AYLSALSHTPTRLALRALSVSTSYDEMSQVRARSGTSMRKTLRWFDLVSLGIGGMVGAGV 75
Query: 75 FVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAA 134
FVTTG A+ L AGPA+++SYAIAG CALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAA
Sbjct: 76 FVTTGHAT-LYAGPAVLLSYAIAGFCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAA 134
Query: 135 FLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVL 194
FLTG+NL+ +YV+SNAAVARG +Y GT IG+ +AKWRL V LP GFNEID +AVAVVL
Sbjct: 135 FLTGANLVADYVLSNAAVARGLTAYLGTTIGISSAKWRLTVPSLPKGFNEIDFVAVAVVL 194
Query: 195 VITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----------DPKNPSGFFPYG 244
+IT VICYSTR+SSVVNMILT LHILFIAFVI+MGFW+ +P NPSGFFP+G
Sbjct: 195 LITLVICYSTRESSVVNMILTALHILFIAFVIMMGFWRGNWKNFTEPANPHNPSGFFPHG 254
Query: 245 AKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSML 304
A GVF GAA+VYLSYIGYDAVSTMAEEV++PVKDIP+GVSGSV++VTVLYCLMAASM+ L
Sbjct: 255 AAGVFKGAALVYLSYIGYDAVSTMAEEVRDPVKDIPVGVSGSVVVVTVLYCLMAASMTKL 314
Query: 305 MPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSS 364
+PYD+I+AEAPFS AFSG+SDGW WVS VIGVGASFGILTSLLVAMLGQARYMCVIGRS+
Sbjct: 315 LPYDVINAEAPFSAAFSGRSDGWGWVSRVIGVGASFGILTSLLVAMLGQARYMCVIGRSN 374
Query: 365 VVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIY 424
VVP+WFARVHPKTSTPVNASAFLGIFTAAIALFTDL VLLNLV IGTLFVFYMVANAVIY
Sbjct: 375 VVPSWFARVHPKTSTPVNASAFLGIFTAAIALFTDLDVLLNLVCIGTLFVFYMVANAVIY 434
Query: 425 RRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFH 484
RRYV GTTNP PTLSFL FS+T+I+FTLIW FVP +KA ML S ++AIA+LQ+FH
Sbjct: 435 RRYVATGTTNPWPTLSFLCSFSITAIMFTLIWKFVPTGGAKAGMLSVSGVIAIAILQLFH 494
Query: 485 CVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVH 544
C+VPQ +KPEFWGVP MPWIP ISIFLN+FLLGSLDGPSYVRFGFFSA+AVL Y+ YSVH
Sbjct: 495 CMVPQVRKPEFWGVPFMPWIPSISIFLNVFLLGSLDGPSYVRFGFFSAVAVLFYVFYSVH 554
Query: 545 ASFDAEEDGSF-GQKSCESPKESAESEDPSLKV 576
ASFDAE D S K+ E ES E ED S +V
Sbjct: 555 ASFDAEGDDSLTANKNGEIHVESKEIEDQSFEV 587
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358346286|ref|XP_003637200.1| High affinity cationic amino acid transporter [Medicago truncatula] gi|355503135|gb|AES84338.1| High affinity cationic amino acid transporter [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/627 (70%), Positives = 500/627 (79%), Gaps = 55/627 (8%)
Query: 1 METHPRNSSFSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYD 60
M +H SSFSS YL+A+A TP+R +RR SVSTSYEEMSRVRA+SG+ MRK+LRW+D
Sbjct: 1 MTSH--GSSFSSLPNYLQAVAKTPSRFARRGFSVSTSYEEMSRVRARSGNSMRKSLRWFD 58
Query: 61 LVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGG 120
LV FGIGGMVGAGVFVTTG A+R++AGP++V+SYAIAG CALLSAFCYTEFAVDMPVAGG
Sbjct: 59 LVSFGIGGMVGAGVFVTTGHATRVHAGPSVVLSYAIAGFCALLSAFCYTEFAVDMPVAGG 118
Query: 121 AFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPD 180
AFSYLRVTFGEFAAF+TG+NLI++YVMSNAAVARGF Y GT +GV +AKWR+ V P+
Sbjct: 119 AFSYLRVTFGEFAAFITGANLIMDYVMSNAAVARGFTKYVGTTVGVSSAKWRITVPSFPE 178
Query: 181 GFNEIDVLA-----------------------------------------VAVVLVITFV 199
GFN+ID++A + ++ + FV
Sbjct: 179 GFNQIDLVAVVVVLLITVVICYRHRTHFDQRCRCYEFIIYNGAQFSFSKFINILFIFYFV 238
Query: 200 ICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----------DPKNPSGFFPYGAKGVF 249
+ST++SSVVNMILT LHILFIAFVI++GFWK +P+NPSGFFP+GA GVF
Sbjct: 239 QFFSTKESSVVNMILTGLHILFIAFVIVIGFWKGSWKNLTQPANPENPSGFFPHGAAGVF 298
Query: 250 NGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDM 309
GA+ VYLSYIGYDAVSTMAEEVK PVKDIPIGVSGSVIIVT+LYCLMAASM ML+PYDM
Sbjct: 299 KGASAVYLSYIGYDAVSTMAEEVKEPVKDIPIGVSGSVIIVTILYCLMAASMCMLLPYDM 358
Query: 310 IDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAW 369
ID EAPFS AF KSDGW W S VIGVGASFGILTSL+VAMLGQARYMCVIGRS+VVPAW
Sbjct: 359 IDPEAPFSAAF--KSDGWGWASRVIGVGASFGILTSLIVAMLGQARYMCVIGRSNVVPAW 416
Query: 370 FARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVN 429
FA+VHPKTSTPVNASAFLGIFTAAIALFTDL VLL+LVSIGTLFVFYMVANAV+YRRYV
Sbjct: 417 FAKVHPKTSTPVNASAFLGIFTAAIALFTDLDVLLDLVSIGTLFVFYMVANAVVYRRYVV 476
Query: 430 LGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQ 489
GTTNP PT+SFL FS TSI+FTLIW VP +KA ML A ++A+ +LQ+FH VPQ
Sbjct: 477 AGTTNPWPTVSFLLSFSFTSIMFTLIWKCVPTGVAKAGMLSACGVLAVVILQLFHFTVPQ 536
Query: 490 AKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHASFDA 549
A+KPEFWGVPLMPWIP ISIFLN+FLLGSLDGPSYVRFG FSA+AVL Y+ YSVHASFDA
Sbjct: 537 ARKPEFWGVPLMPWIPAISIFLNLFLLGSLDGPSYVRFGVFSAVAVLFYIFYSVHASFDA 596
Query: 550 EEDGSFGQKSCESPKESAESEDPSLKV 576
E DGS GQK+ E ES ES D S KV
Sbjct: 597 EGDGSLGQKNGEINVESKESVDQSFKV 623
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084466|emb|CBI25025.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/531 (78%), Positives = 469/531 (88%), Gaps = 11/531 (2%)
Query: 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEF 111
M++ LRW+DLV FG+GGMVGAGVFVTTGRASRL AGPA+V+SYAIAG+CALLSAFCYTEF
Sbjct: 1 MQRNLRWFDLVGFGLGGMVGAGVFVTTGRASRLYAGPAVVLSYAIAGICALLSAFCYTEF 60
Query: 112 AVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKW 171
AVDMPVAGGAFSYLRVTFGEFAAFLTG+NL+++YV+SNAAVAR F +Y GTAIG PT KW
Sbjct: 61 AVDMPVAGGAFSYLRVTFGEFAAFLTGANLVMDYVLSNAAVARSFTAYLGTAIGFPTTKW 120
Query: 172 RLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFW 231
R V GLP GFNEID++AVAVVL+IT +ICYSTR+SSVVNM+LT +HILFIAFVI++GFW
Sbjct: 121 RFTVSGLPKGFNEIDLVAVAVVLIITLIICYSTRESSVVNMVLTAMHILFIAFVIVVGFW 180
Query: 232 K-------DPKNP----SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIP 280
+ +P +P GFFP+GA GVFNGAAMVYLSYIGYDAVST+AEEV+NPVKDIP
Sbjct: 181 RGDWKNFTEPADPRRHQGGFFPFGASGVFNGAAMVYLSYIGYDAVSTLAEEVRNPVKDIP 240
Query: 281 IGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASF 340
IGVSGSV++VT+LYCLMAASMS L+PYD ID EAPFS AF G+S+GWKWVSNVIG GASF
Sbjct: 241 IGVSGSVMLVTILYCLMAASMSKLLPYDAIDPEAPFSAAFRGQSNGWKWVSNVIGAGASF 300
Query: 341 GILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDL 400
GILTSL+VAMLGQARYMCVIGRS VVP+WFARVH KT TPVNASAFLGIFTAAIA+FTDL
Sbjct: 301 GILTSLMVAMLGQARYMCVIGRSKVVPSWFARVHHKTCTPVNASAFLGIFTAAIAVFTDL 360
Query: 401 TVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVP 460
VLLNLVSIGTLFVFYMVANAVIYRRYV++G TNP PTLSFL FS+TSIIFTLIWHF
Sbjct: 361 NVLLNLVSIGTLFVFYMVANAVIYRRYVSVGATNPWPTLSFLVSFSLTSIIFTLIWHFAA 420
Query: 461 PCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLD 520
P K MLGA +VA+A+LQ+FHC+VPQ +KPE WGVPLMPWIP ISIFLNIFLLGSLD
Sbjct: 421 PGHPKEVMLGACTVVAVAILQMFHCMVPQVRKPEHWGVPLMPWIPSISIFLNIFLLGSLD 480
Query: 521 GPSYVRFGFFSALAVLVYLLYSVHASFDAEEDGSFGQKSCESPKESAESED 571
PSYVRFG+FSALAVLVY+LYSVHASFDA+EDG + QK+ E PK+S S D
Sbjct: 481 RPSYVRFGYFSALAVLVYVLYSVHASFDAQEDGYYIQKNAEIPKDSEASVD 531
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228334|ref|NP_187671.1| cationic amino acid transporter 7 [Arabidopsis thaliana] gi|75313793|sp|Q9SQZ0.1|CAAT7_ARATH RecName: Full=Cationic amino acid transporter 7, chloroplastic; Flags: Precursor gi|12322779|gb|AAG51376.1|AC011560_8 putative amino acid transporter; 33388-30195 [Arabidopsis thaliana] gi|8567793|gb|AAF76365.1| amino acid transporter, putative [Arabidopsis thaliana] gi|332641412|gb|AEE74933.1| cationic amino acid transporter 7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/571 (74%), Positives = 489/571 (85%), Gaps = 11/571 (1%)
Query: 2 ETHPRNSSFSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDL 61
H ++SFSS YL +L+ TP+R SRRA+SVSTSY+EMSRVRA SG MR+TLRWYDL
Sbjct: 6 RNHDGDTSFSSLRVYLNSLSDTPSRFSRRAVSVSTSYDEMSRVRAVSGEQMRRTLRWYDL 65
Query: 62 VCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGA 121
+ GIGGM+GAGVFVTTGRASRL AGP+IV+SYAIAGLCALLSAFCYTEFAV +PVAGGA
Sbjct: 66 IGLGIGGMIGAGVFVTTGRASRLYAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGA 125
Query: 122 FSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDG 181
FSY+R+TFGEF AF+TG+NLI++YV+SNAAV+RGF +Y G+A G+ T++WR V GLP+G
Sbjct: 126 FSYIRITFGEFPAFITGANLIMDYVLSNAAVSRGFTAYLGSAFGISTSEWRFIVSGLPNG 185
Query: 182 FNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK--------- 232
FNEID +AV VVL +TFVICYSTR+SS VNM+LT LHI FI FVI+MGF K
Sbjct: 186 FNEIDPIAVIVVLAVTFVICYSTRESSKVNMVLTALHIAFIVFVIVMGFSKGDVKNLTRP 245
Query: 233 -DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVT 291
+P+NPSGFFP+G GVFNGAAMVYLSYIGYDAVSTMAEEVK+PVKDIP+G+SGSV IV
Sbjct: 246 DNPENPSGFFPFGVSGVFNGAAMVYLSYIGYDAVSTMAEEVKDPVKDIPMGISGSVAIVI 305
Query: 292 VLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351
VLYCLMA SMSML+PYD+IDAEAP+S AFS KS+GW+WV+ V+G+GASFGILTSL+VAML
Sbjct: 306 VLYCLMAISMSMLLPYDLIDAEAPYSAAFS-KSEGWEWVTRVVGIGASFGILTSLIVAML 364
Query: 352 GQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGT 411
GQARYMCVIGRS VVP WFA+VHPKTSTPVNASAFLGIFTA +ALFTDL VLLNLVSIGT
Sbjct: 365 GQARYMCVIGRSRVVPIWFAKVHPKTSTPVNASAFLGIFTAVLALFTDLNVLLNLVSIGT 424
Query: 412 LFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGA 471
LFVFYMVANAVI+RRYV +G T P PTLSFL LFS+TSI+FTL+W P K F+LGA
Sbjct: 425 LFVFYMVANAVIFRRYVTVGYTEPWPTLSFLCLFSITSILFTLVWQLAPSGPPKWFILGA 484
Query: 472 SAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFS 531
S + AIA++QIFHCVVPQA+ PEFWGVPLMPW PC+SIFLNIFLLGSLD PSY+RFGFFS
Sbjct: 485 STVTAIAIVQIFHCVVPQARIPEFWGVPLMPWTPCVSIFLNIFLLGSLDAPSYIRFGFFS 544
Query: 532 ALAVLVYLLYSVHASFDAEEDGSFGQKSCES 562
L VLVY+ YSVHAS+DAE DGS K ES
Sbjct: 545 GLVVLVYVFYSVHASYDAEGDGSLDFKDVES 575
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806457|ref|XP_002871112.1| ATCAT6/CAT6 [Arabidopsis lyrata subsp. lyrata] gi|297316949|gb|EFH47371.1| ATCAT6/CAT6 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/566 (75%), Positives = 483/566 (85%), Gaps = 11/566 (1%)
Query: 10 FSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGIGGM 69
FSS YL +L+ TP+R+SRRA+SVSTS +EMS VRA SG MR+TLRWYDL+ GIGGM
Sbjct: 15 FSSLRVYLNSLSATPSRLSRRAISVSTSSDEMSHVRAVSGEQMRRTLRWYDLIGLGIGGM 74
Query: 70 VGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTF 129
VGAGVFVTTGRASRL+AGP+IV+SYAIAGLCALLSAFCYTEFAV +PVAGGAFSY+R+TF
Sbjct: 75 VGAGVFVTTGRASRLDAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIRITF 134
Query: 130 GEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLA 189
GEF AF TG+NLI++YVMSNAAV+R F +Y GTA G+ T+KWR V GLP GFNEID +A
Sbjct: 135 GEFPAFFTGANLIMDYVMSNAAVSRSFTAYLGTAFGISTSKWRFVVSGLPKGFNEIDPVA 194
Query: 190 VAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----------DPKNPSG 239
V VVLVIT +IC STR+SS VNMI+T HI FI FVI+MGF K +P++PSG
Sbjct: 195 VLVVLVITVIICCSTRESSKVNMIMTAFHIAFIFFVIVMGFIKGDSKNLSSPANPEHPSG 254
Query: 240 FFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAA 299
FFP+GA GVFNGAAMVYLSYIGYDAVSTMAEEV+NPVKDIP+GVSGSV IVTVLYCLMA
Sbjct: 255 FFPFGAAGVFNGAAMVYLSYIGYDAVSTMAEEVENPVKDIPVGVSGSVAIVTVLYCLMAV 314
Query: 300 SMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCV 359
SMSML+PYDMID EAPFS AF G S+GW+WV+ V+G+GASFGILTSLLVAMLGQARYMCV
Sbjct: 315 SMSMLLPYDMIDPEAPFSAAFRG-SNGWEWVTKVVGIGASFGILTSLLVAMLGQARYMCV 373
Query: 360 IGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVA 419
IGRS VVP WFA++HPKTSTPVNAS FLGIFTAA+ALFTDL VLLNLVSIGTLFVFYMVA
Sbjct: 374 IGRSRVVPFWFAKIHPKTSTPVNASTFLGIFTAALALFTDLNVLLNLVSIGTLFVFYMVA 433
Query: 420 NAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAV 479
NA+I+RRYV +G T P PTL FL LFS+TS++FTLIW VP K KAFMLGASA+VAIA+
Sbjct: 434 NALIFRRYVPVGPTKPWPTLCFLTLFSITSLVFTLIWKLVPEGKPKAFMLGASAVVAIAI 493
Query: 480 LQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYL 539
+ IF CVVPQA+KPE WGVP MPW PC+SIFLNIFLLGSLD PSYVRFGFFS L VLVYL
Sbjct: 494 VLIFQCVVPQARKPELWGVPFMPWTPCVSIFLNIFLLGSLDAPSYVRFGFFSGLIVLVYL 553
Query: 540 LYSVHASFDAEEDGSFGQKSCESPKE 565
LY VHAS DAE +GSFG K + KE
Sbjct: 554 LYGVHASSDAEANGSFGVKDGQVMKE 579
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238312|ref|NP_196097.1| cationic amino acid transporter 6 [Arabidopsis thaliana] gi|75311713|sp|Q9LZ20.1|CAAT6_ARATH RecName: Full=Cationic amino acid transporter 6, chloroplastic; Flags: Precursor gi|13430548|gb|AAK25896.1|AF360186_1 putative amino acid transport protein [Arabidopsis thaliana] gi|7413539|emb|CAB86019.1| amino acid transport-like protein [Arabidopsis thaliana] gi|9758452|dbj|BAB08981.1| amino acid transporter-like protein [Arabidopsis thaliana] gi|14532754|gb|AAK64078.1| putative amino acid transport protein [Arabidopsis thaliana] gi|21553707|gb|AAM62800.1| amino acid transport-like protein [Arabidopsis thaliana] gi|332003399|gb|AED90782.1| cationic amino acid transporter 6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/569 (75%), Positives = 483/569 (84%), Gaps = 11/569 (1%)
Query: 10 FSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGIGGM 69
FSS YL +L+ TP+R+SRRA+SVSTS +EMSRVRA SG MR+TLRWYDL+ GIGGM
Sbjct: 15 FSSLRVYLNSLSATPSRLSRRAISVSTSSDEMSRVRAVSGEQMRRTLRWYDLIGLGIGGM 74
Query: 70 VGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTF 129
VGAGVFVTTGRASRL+AGP+IV+SYAIAGLCALLSAFCYTEFAV +PVAGGAFSY+R+TF
Sbjct: 75 VGAGVFVTTGRASRLDAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIRITF 134
Query: 130 GEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLA 189
GEF AF TG+NL+++YVMSNAAV+R F +Y GTA G+ T+KWR V GLP GFNEID +A
Sbjct: 135 GEFPAFFTGANLVMDYVMSNAAVSRSFTAYLGTAFGISTSKWRFVVSGLPKGFNEIDPVA 194
Query: 190 VAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----------DPKNPSG 239
V VVLVIT +IC STR+SS VNMI+T HI FI FVI+MGF K +P++PSG
Sbjct: 195 VLVVLVITVIICCSTRESSKVNMIMTAFHIAFIFFVIVMGFIKGDSKNLSSPANPEHPSG 254
Query: 240 FFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAA 299
FFP+GA GVFNGAAMVYLSYIGYDAVSTMAEEV+NPVKDIP+GVSGSV IVTVLYCLMA
Sbjct: 255 FFPFGAAGVFNGAAMVYLSYIGYDAVSTMAEEVENPVKDIPVGVSGSVAIVTVLYCLMAV 314
Query: 300 SMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCV 359
SMSML+PYD+ID EAPFS AF G S+GW+WV+ V+G+GASFGILTSLLVAMLGQARYMCV
Sbjct: 315 SMSMLLPYDLIDPEAPFSAAFRG-SNGWEWVTKVVGIGASFGILTSLLVAMLGQARYMCV 373
Query: 360 IGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVA 419
IGRS VVP WFA++HPKTSTPVNAS FLGIFTAA+ALFTDL VLLNLVSIGTLFVFYMVA
Sbjct: 374 IGRSRVVPFWFAKIHPKTSTPVNASTFLGIFTAALALFTDLNVLLNLVSIGTLFVFYMVA 433
Query: 420 NAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAV 479
NA+I+RRYV +G T P PTL FL LFS+TS++FTLIW VP K KAFMLGASA+VAIA+
Sbjct: 434 NALIFRRYVPVGPTKPWPTLCFLTLFSITSLVFTLIWKLVPEGKPKAFMLGASAVVAIAI 493
Query: 480 LQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYL 539
+ F CVVPQA+KPE WGVP MPW PC+SIFLNIFLLGSLD PSYVRFGFFS L VLVYL
Sbjct: 494 VLSFQCVVPQARKPELWGVPFMPWTPCVSIFLNIFLLGSLDAPSYVRFGFFSGLIVLVYL 553
Query: 540 LYSVHASFDAEEDGSFGQKSCESPKESAE 568
Y VHAS DAE +GSFG K + KE E
Sbjct: 554 FYGVHASSDAEANGSFGVKDGQVMKELIE 582
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829610|ref|XP_002882687.1| hypothetical protein ARALYDRAFT_317861 [Arabidopsis lyrata subsp. lyrata] gi|297328527|gb|EFH58946.1| hypothetical protein ARALYDRAFT_317861 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/571 (74%), Positives = 486/571 (85%), Gaps = 11/571 (1%)
Query: 2 ETHPRNSSFSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDL 61
H ++SFSS YL +L+ TP+R SRRA+SVSTSY+EMSRVRA SG MR+TLRWYDL
Sbjct: 6 RNHDGDTSFSSLRVYLNSLSDTPSRFSRRAVSVSTSYDEMSRVRAVSGEQMRRTLRWYDL 65
Query: 62 VCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGA 121
+ GIGGM+GAGVFVTTGRASRL AGP+IV+SYAIAGL ALLSAFCYTEFAV +PVAGGA
Sbjct: 66 IGLGIGGMIGAGVFVTTGRASRLYAGPSIVVSYAIAGLSALLSAFCYTEFAVHLPVAGGA 125
Query: 122 FSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDG 181
FSY+R+TFGEF AF+TG+NLI++YVMSNAAV+RGF +Y G+A G+ ++WR V GLP+G
Sbjct: 126 FSYIRITFGEFPAFITGANLIMDYVMSNAAVSRGFTAYLGSAFGISASEWRFIVSGLPNG 185
Query: 182 FNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK--------- 232
FN ID +AV VVL +TF+ICYSTR+SS VNM+LT LHI F+ FVI+MGFWK
Sbjct: 186 FNVIDPIAVIVVLTVTFIICYSTRESSKVNMVLTALHIAFLVFVIVMGFWKGDIKNLTRP 245
Query: 233 -DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVT 291
+P+NPSGFFP+G GVFNGAAMVYLSYIGYDAVSTMAEEVK+PVKDIP+G+SGSV IV
Sbjct: 246 DNPENPSGFFPFGVSGVFNGAAMVYLSYIGYDAVSTMAEEVKDPVKDIPMGISGSVAIVI 305
Query: 292 VLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351
VLYCLMA SMSML+PYD+ID EAP+S AFS KS+GW+WV+ +G+GASFGILTSLLVAML
Sbjct: 306 VLYCLMAISMSMLLPYDLIDPEAPYSAAFS-KSEGWEWVTKAVGIGASFGILTSLLVAML 364
Query: 352 GQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGT 411
GQARYMCVIGRS VVP WFA+VHPKTSTPVNASAFLGIFTA +ALFTDL VLLNLVSIGT
Sbjct: 365 GQARYMCVIGRSRVVPIWFAKVHPKTSTPVNASAFLGIFTAFLALFTDLNVLLNLVSIGT 424
Query: 412 LFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGA 471
LFVFYMVANAVI+RRYV +G T P PTLSFL LFS+TSI FTL+W P K F+LGA
Sbjct: 425 LFVFYMVANAVIFRRYVAVGYTKPWPTLSFLCLFSITSIFFTLVWQLAPRGPPKWFILGA 484
Query: 472 SAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFS 531
SA+ AIA++QIFHCVVPQA+ PEFWGVPLMPW PC+SIFLNIFLLGSLD PSY+RFGFFS
Sbjct: 485 SAVTAIAIVQIFHCVVPQARIPEFWGVPLMPWTPCVSIFLNIFLLGSLDAPSYIRFGFFS 544
Query: 532 ALAVLVYLLYSVHASFDAEEDGSFGQKSCES 562
LAVL+Y+ YSVHAS+DAE DGS K ES
Sbjct: 545 GLAVLIYVFYSVHASYDAEGDGSLDFKDVES 575
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 576 | ||||||
| TAIR|locus:2075745 | 584 | CAT7 "cationic amino acid tran | 0.968 | 0.955 | 0.706 | 5.7e-217 | |
| TAIR|locus:2175488 | 583 | CAT6 "AT5G04770" [Arabidopsis | 0.973 | 0.962 | 0.704 | 6.8e-214 | |
| TAIR|locus:2127398 | 594 | AAT1 "AT4G21120" [Arabidopsis | 0.894 | 0.867 | 0.445 | 3e-117 | |
| TAIR|locus:2044682 | 569 | CAT5 "AT2G34960" [Arabidopsis | 0.888 | 0.899 | 0.442 | 1.5e-108 | |
| TAIR|locus:2020387 | 590 | CAT8 "cationic amino acid tran | 0.890 | 0.869 | 0.411 | 3.3e-102 | |
| DICTYBASE|DDB_G0279983 | 766 | ctrB "solute carrier family 7 | 0.814 | 0.612 | 0.356 | 4.8e-78 | |
| WB|WBGene00017747 | 583 | F23F1.6 [Caenorhabditis elegan | 0.652 | 0.644 | 0.352 | 2.6e-67 | |
| TAIR|locus:2167462 | 609 | CAT3 "cationic amino acid tran | 0.645 | 0.610 | 0.350 | 5.4e-67 | |
| WB|WBGene00016806 | 589 | C50D2.2 [Caenorhabditis elegan | 0.649 | 0.634 | 0.358 | 1.1e-66 | |
| FB|FBgn0036764 | 633 | CG5535 [Drosophila melanogaste | 0.677 | 0.616 | 0.316 | 7.7e-66 |
| TAIR|locus:2075745 CAT7 "cationic amino acid transporter 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2096 (742.9 bits), Expect = 5.7e-217, P = 5.7e-217
Identities = 402/569 (70%), Positives = 461/569 (81%)
Query: 4 HPRNSSFSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVC 63
H ++SFSS YL +L+ TP+R SRRA+SVSTSY+EMSRVRA SG MR+TLRWYDL+
Sbjct: 8 HDGDTSFSSLRVYLNSLSDTPSRFSRRAVSVSTSYDEMSRVRAVSGEQMRRTLRWYDLIG 67
Query: 64 FGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFS 123
GIGGM+GAGVFVTTGRASRL AGP+IV+SYAIAGLCALLSAFCYTEFAV +PVAGGAFS
Sbjct: 68 LGIGGMIGAGVFVTTGRASRLYAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFS 127
Query: 124 YLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFN 183
Y+R+TFGEF AF+TG+NLI++YV+SNAAV+RGF +Y G+A G+ T++WR V GLP+GFN
Sbjct: 128 YIRITFGEFPAFITGANLIMDYVLSNAAVSRGFTAYLGSAFGISTSEWRFIVSGLPNGFN 187
Query: 184 EIDXXXXXXXXXITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----------D 233
EID +TFVICYSTR+SS VNM+LT LHI FI FVI+MGF K +
Sbjct: 188 EIDPIAVIVVLAVTFVICYSTRESSKVNMVLTALHIAFIVFVIVMGFSKGDVKNLTRPDN 247
Query: 234 PKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPXXXXXXXXXXTVL 293
P+NPSGFFP+G GVFNGAAMVYLSYIGYDAVSTMAEEVK+PVKDIP VL
Sbjct: 248 PENPSGFFPFGVSGVFNGAAMVYLSYIGYDAVSTMAEEVKDPVKDIPMGISGSVAIVIVL 307
Query: 294 YCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQ 353
YCLMA SMSML+PYD+IDAEAP+S AFS KS+GW+WV+ V+G+GASFGILTSL+VAMLGQ
Sbjct: 308 YCLMAISMSMLLPYDLIDAEAPYSAAFS-KSEGWEWVTRVVGIGASFGILTSLIVAMLGQ 366
Query: 354 ARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLF 413
ARYMCVIGRS VVP WFA+VHPKTSTPVNASAFLGIFTA +ALFTDL VLLNLVSIGTLF
Sbjct: 367 ARYMCVIGRSRVVPIWFAKVHPKTSTPVNASAFLGIFTAVLALFTDLNVLLNLVSIGTLF 426
Query: 414 VFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASA 473
VFYMVANAVI+RRYV +G T P PTLSFL LFS+TSI+FTL+W P K F+LGAS
Sbjct: 427 VFYMVANAVIFRRYVTVGYTEPWPTLSFLCLFSITSILFTLVWQLAPSGPPKWFILGAST 486
Query: 474 IVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFXXX 533
+ AIA++QIFHCVVPQA+ PEFWGVPLMPW PC+SIFLNIFLLGSLD PSY+RFGFF
Sbjct: 487 VTAIAIVQIFHCVVPQARIPEFWGVPLMPWTPCVSIFLNIFLLGSLDAPSYIRFGFFSGL 546
Query: 534 XXXXXXXXXXXXXFDAEEDGSFGQKSCES 562
+DAE DGS K ES
Sbjct: 547 VVLVYVFYSVHASYDAEGDGSLDFKDVES 575
|
|
| TAIR|locus:2175488 CAT6 "AT5G04770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2067 (732.7 bits), Expect = 6.8e-214, P = 6.8e-214
Identities = 403/572 (70%), Positives = 458/572 (80%)
Query: 7 NSSFSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGI 66
+SSFSS YL +L+ TP+R+SRRA+SVSTS +EMSRVRA SG MR+TLRWYDL+ GI
Sbjct: 12 HSSFSSLRVYLNSLSATPSRLSRRAISVSTSSDEMSRVRAVSGEQMRRTLRWYDLIGLGI 71
Query: 67 GGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126
GGMVGAGVFVTTGRASRL+AGP+IV+SYAIAGLCALLSAFCYTEFAV +PVAGGAFSY+R
Sbjct: 72 GGMVGAGVFVTTGRASRLDAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIR 131
Query: 127 VTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEID 186
+TFGEF AF TG+NL+++YVMSNAAV+R F +Y GTA G+ T+KWR V GLP GFNEID
Sbjct: 132 ITFGEFPAFFTGANLVMDYVMSNAAVSRSFTAYLGTAFGISTSKWRFVVSGLPKGFNEID 191
Query: 187 XXXXXXXXXITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----------DPKN 236
IT +IC STR+SS VNMI+T HI FI FVI+MGF K +P++
Sbjct: 192 PVAVLVVLVITVIICCSTRESSKVNMIMTAFHIAFIFFVIVMGFIKGDSKNLSSPANPEH 251
Query: 237 PSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPXXXXXXXXXXTVLYCL 296
PSGFFP+GA GVFNGAAMVYLSYIGYDAVSTMAEEV+NPVKDIP TVLYCL
Sbjct: 252 PSGFFPFGAAGVFNGAAMVYLSYIGYDAVSTMAEEVENPVKDIPVGVSGSVAIVTVLYCL 311
Query: 297 MAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARY 356
MA SMSML+PYD+ID EAPFS AF G S+GW+WV+ V+G+GASFGILTSLLVAMLGQARY
Sbjct: 312 MAVSMSMLLPYDLIDPEAPFSAAFRG-SNGWEWVTKVVGIGASFGILTSLLVAMLGQARY 370
Query: 357 MCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFY 416
MCVIGRS VVP WFA++HPKTSTPVNAS FLGIFTAA+ALFTDL VLLNLVSIGTLFVFY
Sbjct: 371 MCVIGRSRVVPFWFAKIHPKTSTPVNASTFLGIFTAALALFTDLNVLLNLVSIGTLFVFY 430
Query: 417 MVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVA 476
MVANA+I+RRYV +G T P PTL FL LFS+TS++FTLIW VP K KAFMLGASA+VA
Sbjct: 431 MVANALIFRRYVPVGPTKPWPTLCFLTLFSITSLVFTLIWKLVPEGKPKAFMLGASAVVA 490
Query: 477 IAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFXXXXXX 536
IA++ F CVVPQA+KPE WGVP MPW PC+SIFLNIFLLGSLD PSYVRFGFF
Sbjct: 491 IAIVLSFQCVVPQARKPELWGVPFMPWTPCVSIFLNIFLLGSLDAPSYVRFGFFSGLIVL 550
Query: 537 XXXXXXXXXXFDAEEDGSFGQKSCESPKESAE 568
DAE +GSFG K + KE E
Sbjct: 551 VYLFYGVHASSDAEANGSFGVKDGQVMKELIE 582
|
|
| TAIR|locus:2127398 AAT1 "AT4G21120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
Identities = 235/528 (44%), Positives = 334/528 (63%)
Query: 9 SFSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGIGG 68
SF S YL+AL TP+R R ++ S +E++ ++A+SG +M+KTL W+DL+ FGIG
Sbjct: 27 SFQSMGNYLKALKETPSRFMDRIMTRSLDSDEINEMKARSGHEMKKTLTWWDLMWFGIGA 86
Query: 69 MVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128
++G+G+FV TG +R ++GPA+V+SY ++G+ A+LS FCYTEFAV++PVAGG+F+YLRV
Sbjct: 87 VIGSGIFVLTGLEARNHSGPAVVLSYVVSGVSAMLSVFCYTEFAVEIPVAGGSFAYLRVE 146
Query: 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDXX 188
G+F AF+ N+ILEYV+ AAVAR + SYF T + +R+ V L + ++ +D
Sbjct: 147 LGDFMAFIAAGNIILEYVVGGAAVARSWTSYFATLLNHKPEDFRIIVHKLGEDYSHLDPI 206
Query: 189 XXXXXXXITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK-DPKNPSGFFPYGAKG 247
I + T+ SS N I +++H++ I FVI+ GF K D KN S F PYG +G
Sbjct: 207 AVGVCAIICVLAVVGTKGSSRFNYIASIIHMVVILFVIIAGFTKADVKNYSDFTPYGVRG 266
Query: 248 VFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPXXXXXXXXXXTVLYCLMAASMSMLMPY 307
VF AA+++ +YIG+DAVSTMAEE KNP +DIP TV YCLMA ++ ++ PY
Sbjct: 267 VFKSAAVLFFAYIGFDAVSTMAEETKNPGRDIPIGLVGSMVVTTVCYCLMAVTLCLMQPY 326
Query: 308 DMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVP 367
ID +APFS AFS GW W ++ GA G+ T LLV +GQARYM I R+ ++P
Sbjct: 327 QQIDPDAPFSVAFSAV--GWDWAKYIVAFGALKGMTTVLLVGAIGQARYMTHIARAHMMP 384
Query: 368 AWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRY 427
W A+V+ KT TP+NA+ + TA IA FT L +L +L+S+ TLF+F VA A++ RRY
Sbjct: 385 PWLAQVNAKTGTPINATVVMLAATALIAFFTKLKILADLLSVSTLFIFMFVAVALLVRRY 444
Query: 428 VNLGTTNPQPT---LSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQI-- 482
G T+ + L FL L +S + W + + + +G V I L
Sbjct: 445 YVTGETSTRDRNKFLVFLGLILASSTATAVYWAL----EEEGW-IGYCITVPIWFLSTVA 499
Query: 483 FHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFF 530
+VPQA+ P+ WGVPL+PW+P SI +NIFLLGS+D S+VRF +
Sbjct: 500 MKFLVPQARAPKIWGVPLVPWLPSASIAINIFLLGSIDTKSFVRFAIW 547
|
|
| TAIR|locus:2044682 CAT5 "AT2G34960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
Identities = 233/527 (44%), Positives = 323/527 (61%)
Query: 9 SFSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGIGG 68
SF S +Y AL+ T +R R +S S E ++ +S +M++ L W+DLV FG G
Sbjct: 21 SFQSFGSYRAALSQTCSRFKNRLVSRSDDENERFELKKQSEHEMKRCLTWWDLVWFGFGS 80
Query: 69 MVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128
++GAG+FV TG+ + AGPAIV+SY ++GL A+LS FCYTEFAV++PVAGG+F+YLR+
Sbjct: 81 VIGAGIFVLTGQEAHEQAGPAIVLSYVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRIE 140
Query: 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDXX 188
G+FAAF+T N++LE ++ AAVAR + SYF T + R+K D L GFN +D
Sbjct: 141 LGDFAAFITAGNILLESIVGTAAVARAWTSYFATLLNRSPNALRIKTD-LSSGFNLLDPI 199
Query: 189 XXXXXXXITFVICYSTRDSSVVNMILTVLHILFIAFVILMGF-WKDPKNPSGFFPYGAKG 247
+ STR +S++N I + ++ L I FVI+ GF D N + F P+G +G
Sbjct: 200 AVVVIAASATIASISTRKTSLLNWIASAINTLVIFFVIIAGFIHADTSNLTPFLPFGPEG 259
Query: 248 VFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPXXXXXXXXXXTVLYCLMAASMSMLMPY 307
VF AA+VY +Y G+D+++TMAEE KNP +DIP TV+YCLMA S+SM+ Y
Sbjct: 260 VFRAAAVVYFAYGGFDSIATMAEETKNPSRDIPIGLLGSMSIITVIYCLMALSLSMMQKY 319
Query: 308 DMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVP 367
ID A +S AF +S G KW ++ +GA G+ T LLV LGQARY+ I R+ ++P
Sbjct: 320 TDIDPNAAYSVAF--QSVGMKWGKYLVALGALKGMTTVLLVGALGQARYVTHIARTHMIP 377
Query: 368 AWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRY 427
FA VHPKT TP+NA+ + I +A IA F+ L VL +L+SI TLF+F M+ A++ RRY
Sbjct: 378 PIFALVHPKTGTPINANLLVAIPSALIAFFSGLDVLASLLSISTLFIFTMMPIALLVRRY 437
Query: 428 VNLGTTNPQPTLSFLF---LFSVTSIIFT-LIWHFVPPCKSKAFMLGASAIVAIAVLQIF 483
T P+ L L LF V S + T W + K +G + V L
Sbjct: 438 YVRQDT-PRVHLIKLITCLLFVVVSSMGTSAYWGM----QRKGSWIGYTVTVPFWFLGTL 492
Query: 484 HCV--VPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFG 528
V VPQ + P+ WGVPL+PW+PC+SI NIFL+GSL ++VRFG
Sbjct: 493 GIVFFVPQQRTPKVWGVPLVPWLPCLSIATNIFLMGSLGAMAFVRFG 539
|
|
| TAIR|locus:2020387 CAT8 "cationic amino acid transporter 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
Identities = 215/523 (41%), Positives = 316/523 (60%)
Query: 9 SFSSCSAYLRALAHTPARVSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGIGG 68
SF S S Y AL+ T R++ R LS S+ E+ R +S + MR+ L W+DL+ G
Sbjct: 38 SFQSFSTYKSALSATCPRLADRLLSRSSDAYELDAARRESENPMRRCLTWWDLLWLSFGS 97
Query: 69 MVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128
+VG+GVFV TG+ +R+ AGPA+V+SYAI+G+ ALLS CY EF V++PVAGG+FSYLRV
Sbjct: 98 VVGSGVFVITGQEARVGAGPAVVLSYAISGVSALLSVLCYAEFGVEIPVAGGSFSYLRVE 157
Query: 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDXX 188
G+F AF+ N++LE ++ A + R ++SY + + + +R+KVD GF+ +D
Sbjct: 158 LGDFIAFIAAGNILLEAMVGAAGLGRSWSSYLASLVKNDSDYFRIKVDSFAKGFDLLDPV 217
Query: 189 XXXXXXXITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWKDP-KNPSGFFPYGAKG 247
+ T+ +S +N+I +++ + I F++++GF N FFPYGAKG
Sbjct: 218 AVAVLLVANGIAMTGTKRTSWLNLITSMVTVCIIVFIVVVGFTHSKTSNLVPFFPYGAKG 277
Query: 248 VFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPXXXXXXXXXXTVLYCLMAASMSMLMPY 307
V AA+VY SY G+D V+ MAEE + P +DIP TV+YCLMA +++M++ Y
Sbjct: 278 VVQSAAVVYWSYTGFDMVANMAEETEKPSRDIPIGLVGSMSMITVVYCLMALALTMMVKY 337
Query: 308 DMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVP 367
IDA A +S AF+ G KW ++G+ A G+ TSLLV LGQARY I RS ++P
Sbjct: 338 TEIDANAAYSVAFA--QIGMKWAKYLVGICALKGMTTSLLVGSLGQARYTTQIARSHMIP 395
Query: 368 AWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRY 427
WFA VHPKT TP+ A+ + I ++ I+ FT L VL ++ S TLF+F +VA A++ RRY
Sbjct: 396 PWFALVHPKTGTPIYATLLVTILSSIISFFTSLEVLSSVFSFATLFIFMLVAVALLVRRY 455
Query: 428 VNLGTTNPQPTLSFL-FLFSV--TSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFH 484
T L FL FLF + +SI + +W+ K I I L +
Sbjct: 456 YVKDVTPEAGLLKFLGFLFLIIASSIGVSALWN--SGVKGWIAYTVTGVIWFIGTLGL-- 511
Query: 485 CVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRF 527
++P+ + P+ WGVPL+PW+P SI +N+FL+GSL +++RF
Sbjct: 512 ALLPKYRVPKVWGVPLVPWLPSFSIAMNLFLIGSLGYVAFLRF 554
|
|
| DICTYBASE|DDB_G0279983 ctrB "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 177/496 (35%), Positives = 276/496 (55%)
Query: 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEF 111
++K L DL+ FG+G ++GAG+FV TG A+ AGPAIVISY +AG+C LS CY EF
Sbjct: 83 LKKCLNVTDLLAFGVGSIIGAGIFVLTGYAAHEKAGPAIVISYLVAGICCGLSGLCYAEF 142
Query: 112 AVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKW 171
A +P +G +SY + GE A++ G +L LEY++++A+V RG++ Y G+ I K
Sbjct: 143 ASRIPCSGSTYSYSYIMVGELIAWIVGWDLTLEYMIASASVGRGWSGYLGSIINSSGGKL 202
Query: 172 RLKVDG--LPDGFNEIDXXXXXXXXXITFVICYSTRDSSVVNMILTVLHILFIAFVILMG 229
+ L DGF+ +D ++ +I ++S+ N I V+ I I FVI++G
Sbjct: 203 PHPIAPVYLADGFS-VDIIAFLSIMILSLIIAMGMKESARFNKIFVVIKIAIIIFVIVLG 261
Query: 230 -FWKDPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPXXXXXXXX 288
+ D N F PYGAKG+FN AA+ + +Y+G+D V +AEEV+NP +D+P
Sbjct: 262 SVYADTSNWDNFAPYGAKGIFNAAAITFFAYLGFDGVCNVAEEVENPQRDLPIGILGSLG 321
Query: 289 XXTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLV 348
TVLY A +++L+PY +ID EAP S AF + G KW S ++ +GA G+ T+ L
Sbjct: 322 ISTVLYIGTAGVLTLLVPYHLIDVEAPLSVAFD--NIGLKWASIIVAIGAFAGLTTAQLG 379
Query: 349 AMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVS 408
++ Q R + R ++P WF +HP+ TP NA+ F G+ A I+LF ++ +L ++VS
Sbjct: 380 GLISQPRLYYSLSRDGLLPKWFGEIHPRFKTPFNATMFTGVCCATISLFVNIDILADMVS 439
Query: 409 IGTLFVFYMVANAVIYRRYVNLGT----TNPQPTLSF-LFLFSVTSIIFTLIWHFVPPCK 463
IGTL F +V+ V+ RY T T P F LFL S +++ ++ +
Sbjct: 440 IGTLLSFTLVSTCVLILRYPKPRTISESTARYPINKFPLFLQSSATLVPIIV--VLAAIT 497
Query: 464 SKAFM--LGASAIVAIAVLQIFHCVVP-----------QAKKPEFWGVPLMPWIPCISIF 510
S ++ L + I+ + +P + K F PL+P+IP +SI+
Sbjct: 498 SLGYVKSLHWAVILVFGFFGVLFSSIPFFFNETQETILSSSKKTFL-CPLVPFIPILSIW 556
Query: 511 LNIFLLGSLDGPSYVR 526
N++L+ SL ++VR
Sbjct: 557 ANMYLMVSLSWGTWVR 572
|
|
| WB|WBGene00017747 F23F1.6 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 138/392 (35%), Positives = 212/392 (54%)
Query: 50 SDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYT 109
S M++ L D++ IG M+GAG++V TG R AGPAI++S+ +G ALLSAF Y
Sbjct: 24 SQMKRCLTILDVMFIAIGHMIGAGIYVLTGSVVRNQAGPAIILSFIFSGFAALLSAFSYA 83
Query: 110 EFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTA 169
EF P AG A++Y V GE AF+ G + LEY++ NAAVAR +++YF + +
Sbjct: 84 EFGARFPRAGSAYTYSYVGMGEIWAFIVGWTVPLEYMIGNAAVARSWSAYFDNLVSKSVS 143
Query: 170 KWRLKVDG-LPDG--FNEI--DXXXXXXXXXITFVICYSTRDSSVVNMILTVLHILFIAF 224
W L G L DG F + D + + ++ S+ VN L++ +AF
Sbjct: 144 NWTLDTVGRLSDGKGFFALYPDFLAFFLLFLVAVAVAMGSKFSANVNTSFVFLNLAVLAF 203
Query: 225 VILMGF-------WKDPKNP--SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNP 275
VI+ G W S FFPYG +G +GA+ + ++IG++A++T EE KNP
Sbjct: 204 VIICGLTYADFSLWSGTYQDGRSKFFPYGIQGAISGASTCFFAFIGFEALATAGEEAKNP 263
Query: 276 VKDIPXXXXXXXXXXTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIG 335
+ IP +V+Y LM AS+++++PYD++D +A F+ AF K G ++
Sbjct: 264 HRTIPLATFTSLAIISVIYVLMGASLTLMIPYDLVDPDAAFAAAFEMK--GATVAKIIMS 321
Query: 336 VGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIA 395
VGA G+L +L+ R + + ++ WF ++ KT TP+NA+ I A +A
Sbjct: 322 VGALAGMLNNLVTGSFALPRAVYAMADDGLIFGWFGVINSKTKTPLNATIVFTIINAILA 381
Query: 396 LFTDLTVLLNLVSIGTLFVFYMVANAVIYRRY 427
L DL L++ +SIGTL + MV+ VI R+
Sbjct: 382 LVFDLQALVDFLSIGTLLAYSMVSICVIILRH 413
|
|
| TAIR|locus:2167462 CAT3 "cationic amino acid transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 631 (227.2 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 136/388 (35%), Positives = 220/388 (56%)
Query: 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEF 111
+ K L + L+ G+G +GAGV++ G +R ++GPA+ +S+ IAG+ A LSAFCY E
Sbjct: 29 LAKALTFPHLIAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGISAALSAFCYAEL 88
Query: 112 AVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGF----ASYFGTAIGVP 167
+ P AG A+ Y + GE A+L G LILEY + + VARG A FG +P
Sbjct: 89 SSRFPSAGSAYHYSYICIGEGVAWLIGWALILEYTIGGSTVARGISPNLAMIFGGEDCLP 148
Query: 168 TAKWRLKVDGLPDGFNEIDXXXXXXXXXITFVICYSTRDSSVVNMILTVLHILFIAFVIL 227
T R ++ GL +D +T + C ++S+ I+T ++ + FVI+
Sbjct: 149 TILARHQIPGLDI---VVDPCAAVLVFIVTGLCCLGVKESTFAQGIVTTANVFVMIFVIV 205
Query: 228 MG----F---WKDPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIP 280
G F W + P+G+FPYG G+ G+A V+ +YIG+D V++MAEEVKNP +D+P
Sbjct: 206 AGSYLCFKTGWVGYELPTGYFPYGVDGMLTGSATVFFAYIGFDTVASMAEEVKNPRRDLP 265
Query: 281 XXXXXXXXXXTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASF 340
+LY +++ + L+PY +D + P S AFS S G +W + +I +GA
Sbjct: 266 LGIGISLLLCCLLYMMVSVVIVGLVPYYAMDPDTPISSAFS--SHGIQWAAYLINLGAVM 323
Query: 341 GILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDL 400
+ ++L+ ++L Q R + + R ++P++F+ V+ +T P+N + G+ A +A F D+
Sbjct: 324 ALCSALMGSILPQPRILMAMARDGLLPSYFSYVNQRTQVPINGTITTGVCAAILAFFMDV 383
Query: 401 TVLLNLVSIGTLFVFYMVANAVIYRRYV 428
+ L +VS+GTL F MVA +++ RYV
Sbjct: 384 SQLAGMVSVGTLVAFTMVAISLLIVRYV 411
|
|
| WB|WBGene00016806 C50D2.2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 633 (227.9 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 140/390 (35%), Positives = 214/390 (54%)
Query: 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEF 111
+R+ L +D+ G+G M+GAG++V TG R AGP+I++S+ +AG +LLSA CY EF
Sbjct: 25 LRRCLSTFDITLLGVGHMIGAGIYVLTGSVVRNTAGPSIILSFLLAGFASLLSALCYAEF 84
Query: 112 AVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKW 171
P AG A++Y V GE AF+ G N+ILE+++ AAVAR ++ Y + +G +
Sbjct: 85 GARFPKAGSAYTYTYVGVGELWAFVIGWNIILEHMLGAAAVARSWSGYLDSLLGNVISNS 144
Query: 172 RLKVDG-LPDG---FNEI-DXXXXXXXXXITFVICYSTRDSSVVNMILTVLHILFIAFVI 226
+ G L + F + D + F + ++ S+ N LT+L+I + V+
Sbjct: 145 TIARTGHLHEASSFFGDYPDLLAFLLIVLVAFFVALGSKVSTNFNSFLTILNIGIVVIVV 204
Query: 227 LMGF-------WK--DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVK 277
G W D K S FFPYG G+F GAA + +YIG+D ++T EE K+P +
Sbjct: 205 FYGITFADFSLWSGVDEKGNSRFFPYGVSGMFAGAASCFFAYIGFDGLATAGEEAKDPAR 264
Query: 278 DIPXXXXXXXXXXTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVG 337
IP T+ Y LM+AS+++++PY+M+ A FS AF+ + G ++ S + VG
Sbjct: 265 SIPIATFSSMTIVTLSYVLMSASLTLMIPYNMVHPTAAFSDAFTMR--GAEFASYAVSVG 322
Query: 338 ASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF 397
A FG+ TSL+ M R + + ++ + A V+PKT P A G TA IAL
Sbjct: 323 ALFGMTTSLVGGMFALPRCVFSMADDGLLFSSLASVNPKTQVPTQALLIFGFLTAIIALL 382
Query: 398 TDLTVLLNLVSIGTLFVFYMVANAVIYRRY 427
D+T L+ +SIGTL + +V+ VI RY
Sbjct: 383 FDITTLVEFLSIGTLLAYSIVSACVIVLRY 412
|
|
| FB|FBgn0036764 CG5535 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
Identities = 132/417 (31%), Positives = 216/417 (51%)
Query: 33 SVSTSYEEMSRVRAKSGSD---MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA 89
SV+ ++ ++R + S+ + K L +DL GIG +G GV+V G S+ AGPA
Sbjct: 17 SVTNAFRVLTRKKPLEDSNESKLAKVLSAFDLTALGIGSTLGVGVYVLAGEVSKQYAGPA 76
Query: 90 IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSN 149
+V+S+ IA + ++ + CY EF +P +G A+ Y VT GEF AFL G NLILEY + +
Sbjct: 77 VVVSFLIAAIASIFAGLCYAEFGARVPKSGSAYIYSYVTIGEFIAFLIGWNLILEYAIGS 136
Query: 150 AAVARGFASYFGTAIGVPTAKWR-----LKVDGLPDGFNEIDXXXXXXXXXITFVICYST 204
A+V +G ++Y G P + + L ++G+ G D + I
Sbjct: 137 ASVVKGLSTYLDQLCGNPMSSFLGTHMPLNIEGM--GAYP-DLFAFVVTILFSLAIAVGA 193
Query: 205 RDSSVVNMILTVLHILFIAFVILMGF-------WKDPKN--PSG-----FFPYGAKGVFN 250
++S+ VN + T+L++ + FVI+ G W PK+ P G F PYG G+
Sbjct: 194 KESTRVNNVFTMLNLGVVLFVIIAGLFKVSSSNWSIPKSQVPEGYGDGGFMPYGVSGIIK 253
Query: 251 GAAMVYLSYIGYDAVSTMAEEVKNPVKDIPXXXXXXXXXXTVLYCLMAASMSMLMPYDMI 310
GAA+ + +IG+D ++T EE KNP K IP + Y ++ ++M++PY
Sbjct: 254 GAAVCFYGFIGFDCIATAGEEAKNPKKSIPFAVIVSLAMIFLAYFGVSTVLTMMLPYFEQ 313
Query: 311 DAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWF 370
D +AP F + +GW V+ +GA FG+ +S++ AM R + + ++ +
Sbjct: 314 DEKAPLPHVF--RINGWHVAEYVVSIGAMFGLCSSMMGAMFPLPRIVFAMSNDGLLFKFL 371
Query: 371 ARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRY 427
+ K TP + G+ T +A +L+ L+N++SIGTL + MVA+ V+ RY
Sbjct: 372 GDISEKYKTPFKGTMITGMLTGILAAVFNLSQLVNMMSIGTLLAYSMVASCVLMLRY 428
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LZ20 | CAAT6_ARATH | No assigned EC number | 0.7504 | 0.9687 | 0.9571 | no | no |
| Q9SQZ0 | CAAT7_ARATH | No assigned EC number | 0.7460 | 0.9722 | 0.9589 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 576 | |||
| TIGR00906 | 557 | TIGR00906, 2A0303, cationic amino acid transport p | 1e-144 | |
| TIGR00909 | 429 | TIGR00909, 2A0306, amino acid transporter | 6e-77 | |
| COG0531 | 466 | COG0531, PotE, Amino acid transporters [Amino acid | 4e-50 | |
| pfam13520 | 425 | pfam13520, AA_permease_2, Amino acid permease | 3e-40 | |
| TIGR00911 | 501 | TIGR00911, 2A0308, L-type amino acid transporter | 9e-33 | |
| PRK11357 | 445 | PRK11357, frlA, putative fructoselysine transporte | 3e-25 | |
| pfam00324 | 473 | pfam00324, AA_permease, Amino acid permease | 7e-24 | |
| COG1113 | 462 | COG1113, AnsP, Gamma-aminobutyrate permease and re | 4e-22 | |
| TIGR00908 | 442 | TIGR00908, 2A0305, ethanolamine permease | 4e-19 | |
| COG0833 | 541 | COG0833, LysP, Amino acid transporters [Amino acid | 2e-17 | |
| PRK10249 | 458 | PRK10249, PRK10249, phenylalanine transporter; Pro | 3e-15 | |
| PRK10238 | 456 | PRK10238, PRK10238, aromatic amino acid transporte | 7e-15 | |
| TIGR00905 | 473 | TIGR00905, 2A0302, transporter, basic amino acid/p | 7e-14 | |
| TIGR00913 | 478 | TIGR00913, 2A0310, amino acid permease (yeast) | 7e-14 | |
| pfam13906 | 51 | pfam13906, AA_permease_C, C-terminus of AA_permeas | 6e-13 | |
| PRK10644 | 445 | PRK10644, PRK10644, arginine:agmatin antiporter; P | 4e-12 | |
| TIGR00907 | 482 | TIGR00907, 2A0304, amino acid permease (GABA perme | 9e-11 | |
| TIGR01773 | 452 | TIGR01773, GABAperm, gamma-aminobutyrate permease | 9e-10 | |
| PRK15049 | 499 | PRK15049, PRK15049, L-asparagine permease; Provisi | 1e-09 | |
| TIGR03428 | 475 | TIGR03428, ureacarb_perm, permease, urea carboxyla | 2e-09 | |
| TIGR03810 | 468 | TIGR03810, arg_ornith_anti, arginine-ornithine ant | 2e-09 | |
| TIGR04299 | 430 | TIGR04299, antiport_PotE, putrescine-ornithine ant | 6e-09 | |
| PRK10580 | 457 | PRK10580, proY, putative proline-specific permease | 1e-06 | |
| PRK11387 | 471 | PRK11387, PRK11387, S-methylmethionine transporter | 1e-05 | |
| TIGR00910 | 507 | TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyr | 1e-05 | |
| TIGR04298 | 429 | TIGR04298, his_histam_anti, histidine-histamine an | 2e-05 | |
| TIGR03813 | 474 | TIGR03813, put_Glu_GABA_T, putative glutamate/gamm | 8e-05 | |
| PRK11049 | 469 | PRK11049, PRK11049, D-alanine/D-serine/glycine per | 2e-04 | |
| PRK10197 | 446 | PRK10197, PRK10197, gamma-aminobutyrate transporte | 2e-04 | |
| PRK10655 | 438 | PRK10655, potE, putrescine transporter; Provisiona | 3e-04 | |
| PRK11021 | 410 | PRK11021, PRK11021, putative transporter; Provisio | 4e-04 | |
| PRK10746 | 461 | PRK10746, PRK10746, putative transport protein Yif | 6e-04 | |
| PRK10836 | 489 | PRK10836, PRK10836, lysine transporter; Provisiona | 7e-04 |
| >gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease | Back alignment and domain information |
|---|
Score = 426 bits (1098), Expect = e-144
Identities = 194/541 (35%), Positives = 299/541 (55%), Gaps = 41/541 (7%)
Query: 46 AKSGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSA 105
++ S M++ L +DL+ GIG +GAG++V TG +R ++GPAIV+S+ I+GL A+LS
Sbjct: 20 SREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSG 79
Query: 106 FCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIG 165
FCY EF +P AG A+ Y VT GE AF+TG NLILEYV+ AAVAR +++YF +
Sbjct: 80 FCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLN 139
Query: 166 VPTAKWRLKVDGL-PDGFNE-IDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIA 223
++R L DG E D AV ++L++ ++ + ++S+ VN I T ++IL +
Sbjct: 140 KQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLL 199
Query: 224 FVILMGFWK---------DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKN 274
FVI+ GF K + K GF PYG GV +GAA + ++IG+DA++T EEVKN
Sbjct: 200 FVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKN 259
Query: 275 PVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVI 334
P + IPIG+ S+++ V Y LM+A+++++MPY ++D +APF AF GW ++
Sbjct: 260 PQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYV--GWGPAKYIV 317
Query: 335 GVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAI 394
VGA G+ TSLL M R + + R ++ W A+++ KT TP+NA+ G A +
Sbjct: 318 AVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALM 377
Query: 395 ALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRY-VNLGTTNPQPT--------------- 438
A DL L++L+SIGTL + +VA V+ RY L + T
Sbjct: 378 AFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSK 437
Query: 439 -----------LSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVV 487
F L SI+ T + +L ++ + V+ +
Sbjct: 438 SESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVV-LTIWRQ 496
Query: 488 PQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHASF 547
PQ K+ + VPL+P++P +SI +NIFL+ LD ++VRF + A+ L+Y LY + S
Sbjct: 497 PQNKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSL 556
Query: 548 D 548
+
Sbjct: 557 E 557
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557 |
| >gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter | Back alignment and domain information |
|---|
Score = 249 bits (638), Expect = 6e-77
Identities = 135/380 (35%), Positives = 201/380 (52%), Gaps = 11/380 (2%)
Query: 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEF 111
+ + L +DL GIG M+G G+FV TG A+ AGPA+++S+ +AGL AL A Y E
Sbjct: 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAA-GKAGPAVILSFVLAGLTALFIALVYAEL 59
Query: 112 AVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFG---TAIGVPT 168
A +PVAG ++Y GE AF+ G +L LEY ++ AAVA G+ Y +G+
Sbjct: 60 AAMLPVAGSPYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDL 119
Query: 169 AKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFI-AFVIL 227
G FN + A+ +VL +T+++ ++S VN IL VL + + F L
Sbjct: 120 PAVLTAKPGNGGVFN---LPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAAL 176
Query: 228 MGFWKDPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSV 287
N + F P G GV A+V+ ++IG++A+ST AEEVKNP +DIP + S+
Sbjct: 177 GAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSL 236
Query: 288 IIVTVLYCLMAASMSMLMPYDMI-DAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSL 346
I+VT+LY L+AA + +P+ + + AP S G G ++ GA F I + +
Sbjct: 237 IVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLV--GYDLGQGIGGLILTAGAVFSIASVM 294
Query: 347 LVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNL 406
L + G +R + + R ++P ++VHPKT TP + + A +A L L L
Sbjct: 295 LAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAEL 354
Query: 407 VSIGTLFVFYMVANAVIYRR 426
SIGTL F V AVI R
Sbjct: 355 TSIGTLIAFAAVNVAVIILR 374
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429 |
| >gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 4e-50
Identities = 115/403 (28%), Positives = 200/403 (49%), Gaps = 23/403 (5%)
Query: 65 GIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSY 124
G+G M+G+G+F G A+ L PA ++++ IAG+ L A Y E + +P AGGA++Y
Sbjct: 24 GVGSMIGSGIFALPGSAAGL--APAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAY 81
Query: 125 LRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNE 184
+ G FL G +L YV++ AA+A G ASY P L G
Sbjct: 82 AKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGP--------GLLSIGPLL 133
Query: 185 IDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWKDPKNPSGFFP-- 242
I ++A+A++ ++T + + S+ +N I+T+L I+ + I++G + + F
Sbjct: 134 IILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPF 193
Query: 243 ----YGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMA 298
G+ + + ++ G++A++T+AEEVKNP + IP + S++IV +LY L A
Sbjct: 194 NPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGA 253
Query: 299 ASMSMLMPYDMIDAEAPFS-GAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYM 357
+ ++P + A AP + A + G W + +I + A + SLL +L +R +
Sbjct: 254 LVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313
Query: 358 CVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLT-----VLLNLVSIGTL 412
+ R ++P +FA+V+PK TPV A GI + + L L+ L++L S+ L
Sbjct: 314 YAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFL 373
Query: 413 FVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLI 455
+ +VA A++ R L L + I+ L+
Sbjct: 374 IAYLLVALALLVLRR-KKPDLKRPFRLPLAPLIPILGIVAVLL 415
|
Length = 466 |
| >gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 3e-40
Identities = 105/445 (23%), Positives = 201/445 (45%), Gaps = 37/445 (8%)
Query: 56 LRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLS-AFCYTEFAVD 114
L IG ++G+G+FVT AS AG A ++ IA L L+ A Y E +
Sbjct: 1 LSLLSAFALVIGSIIGSGIFVTPLIAS---AGAAAILWGWIAALIFSLAVALVYAELSSA 57
Query: 115 MPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLK 174
P GG + +L+ FG+ AF+ L Y++ A+ + A Y +A
Sbjct: 58 FPRNGGIYVWLKNAFGKPVAFIAAWFNWLAYILGLASSSSVAAQYLLSAFFPDLVGNTWL 117
Query: 175 VDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILF-IAFVILMGFWK- 232
G +A+A++++ + ++S+ + IL ++ +L + +IL+G
Sbjct: 118 TYG----------IAIAILIIFALINIRGIKESAKIQNILGIVKLLLPLILIILLGLVLA 167
Query: 233 -------DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSG 285
P + + FFP G GVF G +V S+ G+++ + ++EEVK +D+P +
Sbjct: 168 LGGGFNLLPNSWTTFFPSGWPGVFLGLLIVLWSFGGFESAANVSEEVKK--RDVPKALFI 225
Query: 286 SVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFS--GKSDGWKWVSNVIGVGASFGIL 343
++IV VLY L+ ++P D I + + ++ G W + ++ + + +L
Sbjct: 226 GLLIVGVLYLLVNILFLGVVPDDEIAKLSNLPSVAALLFEAVGGPWGAIIVVILLALSLL 285
Query: 344 TSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFT----- 398
++ A++ +R + + R V+P +FA+V+ K +PV A I + + L
Sbjct: 286 GAVNTAIVASSRVLEALARDGVLPKFFAKVN-KFGSPVRALILTAILSLILLLLFLLSGA 344
Query: 399 DLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHF 458
LL+L ++G L V+ ++ ++ R + + ++ I+F L+ F
Sbjct: 345 AYNALLSLSAVGYLLVYLLLIIGLLILRKKR-PDLPRIKGRWPVAILAILFILFLLVALF 403
Query: 459 VPPCKSKAFMLGASAIVAIAVLQIF 483
PP G++ AI ++ +F
Sbjct: 404 FPP---GGPSTGSNLNYAIILVVVF 425
|
Length = 425 |
| >gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 9e-33
Identities = 105/413 (25%), Positives = 186/413 (45%), Gaps = 35/413 (8%)
Query: 66 IGGMVGAGVFVTTGRASRLNAGPAI-VISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSY 124
+G ++G+G+FV+ + + +I +A+ G+ +++ A Y E +P +GG ++Y
Sbjct: 54 VGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNY 113
Query: 125 LRVTFGEFAAFLT-GSNLILEYVMSNAAVARGFASYFGT--AIGVPTAKWRLKVDGLPDG 181
+ FG AFL L++ S A A FA Y T +W ++
Sbjct: 114 ILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIR------- 166
Query: 182 FNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGF---------WK 232
++AV VL++T V C S + ++ V I T +L + +I+ G+
Sbjct: 167 -----LVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESL 221
Query: 233 DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTV 292
+PKN A G+ +Y G++ ++ + EEVKNP + +PI + S+ IVT
Sbjct: 222 NPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTF 281
Query: 293 LYCLM-AASMSMLMPYDMIDAEAPFSGAFSGKSDG-WKWVSNVIGVGAS-FGILTSLLVA 349
+Y L A ++L P +++ + A + F + G W + VG S FG S+ +
Sbjct: 282 IYVLTNIAYFTVLSPEELLASLA-VAVDFGERLLGVMSWAMPAL-VGLSCFG---SVNGS 336
Query: 350 MLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVS- 408
+ +R V GR +P+ + +H K TP+ + + T + D+ L+NL+S
Sbjct: 337 LFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISF 396
Query: 409 IGTLFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPP 461
LF VA +++ RY P F +F + S +F +I P
Sbjct: 397 ANWLFNALAVA-GLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSP 448
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501 |
| >gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-25
Identities = 102/429 (23%), Positives = 178/429 (41%), Gaps = 29/429 (6%)
Query: 47 KSGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAI-VISYAIAGLCALLSA 105
++++ L ++ ++ +G VG+G+FV+ G ++ P + V+++ I GL +
Sbjct: 1 MGSQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQM 60
Query: 106 FCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTG-SNLILEYVMSNAAVARGFASYFGTAI 164
Y E + P G + YL+ AFL+G ++ S + +A S G
Sbjct: 61 CVYAELSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLT 120
Query: 165 GVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAF 224
+ D L +A +++ + S + ++T+ I+
Sbjct: 121 PI---------DPLL-----GKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTI 166
Query: 225 VILMG-FWKDPKN--PSGFFPYGAKGVFN----GAAMVYLSYIGYDAVSTMAEEVKNPVK 277
VI +G FW +N GA G F G + SY G ++ M E+KNP K
Sbjct: 167 VIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGK 226
Query: 278 DIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGV 336
+P + GS ++V VLY L+A +S LMP+D + E P S A + + +
Sbjct: 227 TMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAI 286
Query: 337 GASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIAL 396
A IL SL ++ Q R + + ++ F VHPK +TP + G
Sbjct: 287 TAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIF 346
Query: 397 FTDLTVLLNLVSIGTLFVFYMVANAVIYRR----YVNLGTTNPQPTLSFL-FLFSVTSII 451
+DLT LL ++ F + ++I+ R Y L T ++ L S+ +
Sbjct: 347 VSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDDYKPLWRTPAFGLMTTLAIASSLILVA 406
Query: 452 FTLIWHFVP 460
T +W +P
Sbjct: 407 STFVWAPIP 415
|
Length = 445 |
| >gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 7e-24
Identities = 76/388 (19%), Positives = 145/388 (37%), Gaps = 38/388 (9%)
Query: 60 DLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAG 119
++ +GG++G G+FV +G ++ Y IAG+ L+ E + + PVAG
Sbjct: 1 HVLMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLIAGVVIFLTMLSLGEMSTNGPVAG 60
Query: 120 GAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLP 179
G ++Y G F TG N L ++ A + VP +P
Sbjct: 61 GFYAYASRFLGPSLGFATGWNYWLSWIFVIALELTAASILIQFWELVP---------DIP 111
Query: 180 DGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWKDPKNPSG 239
+ V V ++++ + +I + I FI ++ N
Sbjct: 112 YLWVWGAVFIVLLLIINLVGVKGYGEAEFWFALIKVIAIIGFIIVGFIIPLSGGGPNDGA 171
Query: 240 FFPYGA-----------------KGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIG 282
+ Y F+ + + ++ G + V A EVKNP K IP
Sbjct: 172 YLGYNGGKNNFPPGFASPGTGSFANFFSVFVIAFFAFTGIELVGNAAGEVKNPRKAIPKA 231
Query: 283 VSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFS-----GKSDGWKWVSNVIGVG 337
+ +V +T+ Y L ++ +L+P++ A + A S KS G ++ +I
Sbjct: 232 ILQAVWRITIFYILSLLAIGLLVPWNDPGLLADSASAASPFVIFFKSLGISGLAPLINAV 291
Query: 338 ASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF 397
L++ ++ +R + + R + P + +V K+ P+ A + L
Sbjct: 292 ILTAALSAANSSLYSGSRVLYALARDGLAPKFLKKV-DKSGVPLRAILLSTAISLLAVLL 350
Query: 398 TDLTV------LLNLVSIGTLFVFYMVA 419
L LL + + L V+ +++
Sbjct: 351 ASLNPAIVFNFLLAISGLIGLIVWGLIS 378
|
Length = 473 |
| >gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 4e-22
Identities = 99/396 (25%), Positives = 160/396 (40%), Gaps = 61/396 (15%)
Query: 47 KSGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAF 106
+++ L+ + IGG +G G+F+ +G A + AGP+++++Y IAG+ L
Sbjct: 6 NEEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAM-AGPSVLLAYLIAGIFVFLIMR 64
Query: 107 CYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGV 166
E V PV+G Y R G +A FLTG +V+ A TAIG+
Sbjct: 65 ALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAEL--------TAIGI 116
Query: 167 PTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN---------MILTVL 217
W PD + LA V+L+ +I SV +I
Sbjct: 117 YLQFW------FPDVPQWVFALAAVVLLLAVNLI-------SVKVFGELEFWFALIKVAA 163
Query: 218 HILFIAFVILMGFWKDPKNPS-----------GFFPYGAKGVFNGAAMVYLSYIGYDAVS 266
I FI I++ F GFFP G G + +V ++ G + V
Sbjct: 164 IIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVG 223
Query: 267 TMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSD 325
A E K+P K IP ++ + + + Y + L P++ I +PF FS
Sbjct: 224 ITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLI-- 281
Query: 326 GWKWVSNVIGVGASFGILTSLLVAMLGQA----RYMCVIGRSSVVPAWFARVHPKTSTPV 381
G + + ++ +F +LT+ L A+ R + + + P FA++ K PV
Sbjct: 282 GIPFAAGIM----NFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLS-KRGVPV 336
Query: 382 NASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYM 417
NA I +A+ L L V+LN + +F
Sbjct: 337 NA-----ILLSAVVLL--LGVVLNYILPEKVFELVT 365
|
Length = 462 |
| >gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 4e-19
Identities = 74/323 (22%), Positives = 131/323 (40%), Gaps = 16/323 (4%)
Query: 106 FCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIG 165
F E + +P AGG + + R FG + FL G+ +++E+ + A+A +Y +
Sbjct: 58 FSLAELSTMIPTAGGGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFP 117
Query: 166 VPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFV 225
V L F I++L V + FV+ + V + V H
Sbjct: 118 VGPGW--LAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLF 175
Query: 226 ILMGFWKDPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSG 285
G S F P GVF ++ + V+ AEE KNP +DIP G+ G
Sbjct: 176 --NGPQ---TGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIG 230
Query: 286 SVIIVTVLYCL-MAASMSMLMPYDMIDAEAPFSGAFS---GKSDGWKWVSNVIGVGASFG 341
+++ + L + +++ + P A G S N++G+ FG
Sbjct: 231 AILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGL---FG 287
Query: 342 ILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLT 401
++ S + G +R + + R+ +P ++V+ K PV A G+ T T
Sbjct: 288 LIASFHGIIYGYSRQIFALSRAGYLPESLSKVNRK-KAPVLAIVVPGVI-GFGLSLTGQT 345
Query: 402 VLLNLVSIGTLFVFYMVANAVIY 424
L+ LVS+ + Y+++ A +
Sbjct: 346 ALIILVSVFGAIISYVLSMAAHF 368
|
The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily [Transport and binding proteins, Amino acids, peptides and amines]. Length = 442 |
| >gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 2e-17
Identities = 92/440 (20%), Positives = 162/440 (36%), Gaps = 93/440 (21%)
Query: 27 VSRRALSVSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNA 86
R + + E+ + G ++++L+ L IGG +G G+FV +G + A
Sbjct: 18 FKRDEHDMDSELEDDEDETQQGGE-LKRSLKSRHLQMIAIGGAIGTGLFVGSG-KALSQA 75
Query: 87 GPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEY 145
GPA ++I+Y I G+ E AV PV+G +Y F G N L +
Sbjct: 76 GPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDPAFGFALGWNYWLNW 135
Query: 146 VMSNAA--VARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYS 203
++ A + VP W +A+ LV+ F++
Sbjct: 136 AVTLPLELTAASLVIQYWFPDTVPPWIW------------------IAIFLVLIFLL--- 174
Query: 204 TRDSSVVNM-----------------ILTVLHILFIAFVILMG-----------FWKDPK 235
N+ +LT++ + + +I+ G +W DP
Sbjct: 175 -------NLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDP- 226
Query: 236 NPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYC 295
G F G KG + + S+ G + V A E +NP K IP + + + Y
Sbjct: 227 ---GAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYI 283
Query: 296 LMAASMSMLMPYDMID---------AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSL 346
L + +L+PY+ A +PF A K+ G ++++ + ILTS+
Sbjct: 284 LSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAI--KNAGIPVAASIM----NAVILTSV 337
Query: 347 LVA----MLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDL-- 400
L A + +R + + + P FA+V + P+ A +F +A
Sbjct: 338 LSAANSGLYASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLF-GLLAFLNSSFK 395
Query: 401 -----TVLLNLVSIGTLFVF 415
LLN+ + +
Sbjct: 396 ETTVFNWLLNISGLSGFIAW 415
|
Length = 541 |
| >gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 3e-15
Identities = 90/384 (23%), Positives = 153/384 (39%), Gaps = 45/384 (11%)
Query: 35 STSYEEMSRVRAKSGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISY 94
ST E+ + + + + L + +GG +G G+F+ G A ++ AGPA+++ Y
Sbjct: 5 STVSEDTA---SNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQM-AGPAVLLGY 60
Query: 95 AIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVAR 154
+AG+ A L E V+ PV+G + +G FA FL+G N + +V+ A
Sbjct: 61 GVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAEL- 119
Query: 155 GFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMIL 214
TA G+ W PD I A A ++I V + R
Sbjct: 120 -------TAAGIYMQYW------FPDVPTWI--WAAAFFIIINAVNLVNVRLYGETEFWF 164
Query: 215 TVLHILFIAFVILMGFW-------------KDPKNPSGFFPYGAKGVFNGAAMVYLSYIG 261
++ +L I +I G W + GFF G G+ A++ S+ G
Sbjct: 165 ALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGG 224
Query: 262 YDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAE-APFSGAF 320
+ + A E ++P K IP V+ V + + Y + L P+ + + +PF F
Sbjct: 225 LELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIF 284
Query: 321 SGKSDGWKWVSNVIGVGASFGILTSLL----VAMLGQARYMCVIGRSSVVPAWFARVHPK 376
SNV+ +F IL + L + +R + + P + RV +
Sbjct: 285 HNLD------SNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRV-SR 337
Query: 377 TSTPVNASAFLGIFTAAIALFTDL 400
P+N+ G T+ + L L
Sbjct: 338 RGVPINSLMLSGAITSLVVLINYL 361
|
Length = 458 |
| >gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 7e-15
Identities = 95/389 (24%), Positives = 160/389 (41%), Gaps = 49/389 (12%)
Query: 47 KSGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRL-NAGPAIVISYAIAGLCALLSA 105
+ G +++ L+ + +GG +G G+F+ G AS + +AGP I++ YAIAG A L
Sbjct: 5 QHGEQLKRGLKNRHIQLIALGGAIGTGLFL--GSASVIQSAGPGIILGYAIAGFIAFLIM 62
Query: 106 FCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIG 165
E V+ PVAG + +G FA F +G N + YV+ A TA+G
Sbjct: 63 RQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAEL--------TAVG 114
Query: 166 VPTAKWRLKVDGLPDG------FNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHI 219
W ++ N I++ V V + F +++ +I V I
Sbjct: 115 KYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWF-------AIIKVIAVVAMI 167
Query: 220 LFIAFVILMG----------FWKDPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMA 269
+F +++ G W GF P+G G+ A++ S+ G + V A
Sbjct: 168 IFGGWLLFSGNGGPQATVSNLWDQ----GGFLPHGFTGLVMMMAIIMFSFGGLELVGITA 223
Query: 270 EEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAE-APFSGAFSGKSDGWK 328
E NP + IP + + + + Y A + LMP+ + A+ +PF F D
Sbjct: 224 AEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGD--T 281
Query: 329 WVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLG 388
+V+N + + L+ + +R + + + P A V K PVN
Sbjct: 282 FVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVSA 340
Query: 389 IFTAAIALFTDLTVLLNLVSIGTLFVFYM 417
+ TA L VL+N ++ + F M
Sbjct: 341 LVTA-------LCVLINYLAPESAFGLLM 362
|
Length = 456 |
| >gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 7e-14
Identities = 88/382 (23%), Positives = 148/382 (38%), Gaps = 28/382 (7%)
Query: 54 KTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAV 113
K L + L IG M+G+G+F + + A++I + I G+ L AF + A
Sbjct: 7 KKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILAT 66
Query: 114 DMP-VAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWR 172
P + GG ++Y R FG + F++G L + N A A S G + +
Sbjct: 67 KKPELDGGIYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG-- 124
Query: 173 LKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHIL-FIAFVILMGFW 231
+ +P + A ++ V TF++ R ++ +N I T+ ++ F+I+ FW
Sbjct: 125 ---NPVPSI-----LGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFW 176
Query: 232 KDPK------NPSGFFPYGAKG--VFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGV 283
G+ V N + +IG + + KN D+
Sbjct: 177 FKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNK-SDVGKAT 235
Query: 284 SGSVIIVTVLYCLMAA-SMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGI 342
+ V+Y L+ S+ +L ++ + P A G KW + +I +G +
Sbjct: 236 VLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVG-KWGAVLISLGLIISV 294
Query: 343 LTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTV 402
L SLL + A + + P F RV+ K P A L + I LF L
Sbjct: 295 LGSLLSWTMLAAEVPFSAAKDGLFPKIFGRVN-KNGAPSVA---LLLTNILIQLFL-LLT 349
Query: 403 LLNLVSIGTLFVFYMVANAVIY 424
LL + L +V V Y
Sbjct: 350 LLTSSAYNVLVSLAVVMILVPY 371
|
This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions [Transport and binding proteins, Amino acids, peptides and amines]. Length = 473 |
| >gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 7e-14
Identities = 98/483 (20%), Positives = 174/483 (36%), Gaps = 70/483 (14%)
Query: 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEF 111
+K+L+ + +GG +G G+ V +G A GPA ++I YAI G E
Sbjct: 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALA-TGGPAGLLIGYAIMGSIIYCVMQSLGEM 59
Query: 112 AVDMPVAGGAFSYLRVTFGEFA-AFLTGSNLILEYVMSNAA---VARGFASYFGTAIGVP 167
A PV G+F+ F + A F G N L++++ A Y+ V
Sbjct: 60 ATFYPVVSGSFATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDK--VN 117
Query: 168 TAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNM--ILTVLHILFIAFV 225
A W I + V +V++ F + + IL ++ + ++ +
Sbjct: 118 PAVW-------------IAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSII 164
Query: 226 ILMG-----------FWKDPKNPSGFFPYGAKGVFNGAAMVYL----SYIGYDAVSTMAE 270
+ G +W DP F G F G V++ S+ G + V+ A
Sbjct: 165 LNCGGGPNHGYIGFRYWHDPG---AFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAG 221
Query: 271 EVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPY--DMIDAEAPFSGAFSG------ 322
E NP K IP + + V Y L + L+PY + + + S + +
Sbjct: 222 EAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAI 281
Query: 323 KSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVN 382
++ G K + ++ +L++ ++ +R + + + P FA V + P
Sbjct: 282 QNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYV 340
Query: 383 ASAFLGIFTAAIALF-------TDLTVLLNLVSIGTLFVFYMVANAVIYRRYV------- 428
A +F +A T LLN+ + F + + + I R
Sbjct: 341 AVIVSSLF-GLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKAQGRS 399
Query: 429 --NLGTTNP-QPTLSFLFLFSVTSIIFTLIWHFVPP--CKSKAFMLGASAIVAIAVLQIF 483
L + P S+ LF I+ + P +K+F ++ L I
Sbjct: 400 LDELPYKSQTGPYGSYYALFFNILILIAQGYVAFAPVKFSAKSFFEAYLSLPIFIALYIG 459
Query: 484 HCV 486
H V
Sbjct: 460 HKV 462
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 478 |
| >gnl|CDD|206077 pfam13906, AA_permease_C, C-terminus of AA_permease | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 6e-13
Identities = 18/51 (35%), Positives = 34/51 (66%)
Query: 496 WGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHAS 546
+ VPL+P++P +SI +NI+L+ LD +++RF + + +L+Y Y + S
Sbjct: 1 FKVPLVPFLPALSILINIYLMVQLDALTWIRFAVWLLIGLLIYFGYGIRHS 51
|
This is the C-terminus of AA-permease enzymes that is not captured by the models pfam00324 and pfam13520. Length = 51 |
| >gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-12
Identities = 92/425 (21%), Positives = 165/425 (38%), Gaps = 67/425 (15%)
Query: 67 GGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126
G ++G+GVF+ A+ + G + + + + AL + Y + + P GG+++Y R
Sbjct: 21 GNIMGSGVFLLP--ANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYAR 78
Query: 127 VTFGEFAAFLTGSNLILEYVMSNAAVA---RGFASYFGTAIGVPTAKWRLKVDGLPDGFN 183
FG F + T L + N A+ G+ SYF + P
Sbjct: 79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPL--------------- 123
Query: 184 EIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHIL----FIAFVILMGFWKDPK---- 235
VL + V+V+ + + ++ + V +L + + FW +
Sbjct: 124 ---VLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMA 180
Query: 236 --NPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVL 293
N SG +GA + + + S+IG ++ S A VKNP +++PI G V+I V
Sbjct: 181 AWNVSGLGTFGA--IQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVC 238
Query: 294 YCLMA-ASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLG 352
Y L + A M M+ + + +PF A + + G ++ A+ G L SL L
Sbjct: 239 YVLSSTAIMGMIPNAALRVSASPFGDA-ARMALG-DTAGAIVSFCAAAGCLGSLGGWTLL 296
Query: 353 QARYMCVIGRSSVVPAWFARVHPK-------------------TSTPVNASAFLGIFTAA 393
+ + P FARV+ +S NAS G+ ++
Sbjct: 297 AGQTAKAAADDGLFPPIFARVNKAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSV 356
Query: 394 IALFTDLTVLLNLVSI--------GTLFVFYMVAN--AVIYRRYVNLGTTNPQPTLSFLF 443
+FT + L ++ G Y+ A +Y + +G+ + SF+
Sbjct: 357 SVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTLIAFVYCIWAVVGSGAKEVMWSFVT 416
Query: 444 LFSVT 448
L +T
Sbjct: 417 LMVIT 421
|
Length = 445 |
| >gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 9e-11
Identities = 90/442 (20%), Positives = 155/442 (35%), Gaps = 61/442 (13%)
Query: 62 VCFGIGGMVGAGVFVTTGRASRLNAG--PAIVISYAIAGLCALLSAFCYTEFAVDMPVAG 119
F I ++T L++G +IV + IAG ++ A E + P +G
Sbjct: 22 FAFSISNSWTG---ISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG 78
Query: 120 GAFSYLRVTFGE----FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKV 175
G + + FA+++TG + V A+ A + + T
Sbjct: 79 GQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYI- 137
Query: 176 DGLPDGFNEIDVLAVAVVLVITFVICYSTR------DSSVVNMILTVLHILFIAFVILMG 229
P ++ ++ + L+ + T+ S+ +L L I
Sbjct: 138 ---PTRWHIFGIMI-GIHLIHALINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSP 193
Query: 230 FWKDPK------NPS--GFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPI 281
+ D K N S G+ P G + G S GYD + MAEE++NP P
Sbjct: 194 KFNDGKFVFTNFNNSTGGWKPGGFAFLL-GLLNPAWSMTGYDGTAHMAEEIENPEVVGPR 252
Query: 282 GVSGSVII--VTVLYCLMAASMSMLMPYDMIDAEAP------FSGAFSGKSDGWKWVSNV 333
+ G+V I VT + SM +I + F A K+
Sbjct: 253 AIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGA--IFLLC 310
Query: 334 IGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPA--WFARVHPKTSTPVNAS------- 384
+ + SF + M +R + R +P ++RV+P+T P+NA
Sbjct: 311 LILVTSFFCAIT---CMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWI 367
Query: 385 -----AFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQPTL 439
LG TA A+F+ TV L++ +V ++ R + G
Sbjct: 368 ILIGLLGLGSSTAFQAIFSVCTVALDVS-----YVIPIICKLAKGRNTIAPGPFWLGKYG 422
Query: 440 SFLFLFSVTSIIFTLIWHFVPP 461
F+ +V +F+ + PP
Sbjct: 423 FFVNAVAVAWTVFSSVLFSFPP 444
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 482 |
| >gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 9e-10
Identities = 99/472 (20%), Positives = 182/472 (38%), Gaps = 59/472 (12%)
Query: 45 RAKSGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLS 104
+++SG + L+ + I G++GAG+FV +G A +AGPA +++Y +AGL +
Sbjct: 3 QSQSGLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIA-SAGPAALLAYLLAGLLVVFI 61
Query: 105 AFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMS---NAAVARGFASYFG 161
E AV P G +Y G +A F G +V+ A A G Y+
Sbjct: 62 MRMLGEMAVANPDTGSFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWF 121
Query: 162 TAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNM------ILT 215
I + W + ++ + +V+T YS + ++
Sbjct: 122 PDIPL----W---------------LFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIA 162
Query: 216 VLHILFIAFVILMGFW--KDPKNPS------GFFPYGAKGVFNGAAMVYLSYIGYDAVST 267
++ + + V + GF + S GFFP G V + S++G + V+
Sbjct: 163 IIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTI 222
Query: 268 MAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDM--IDAEAPFSGAFSGKS- 324
A E NP+K I + + + V Y + L+P++ + +
Sbjct: 223 AAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGI 282
Query: 325 DGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNA- 383
K + + + + A L S A+ +R + + P F +++ K PV A
Sbjct: 283 PHAKLIMDFVVLTAVLSCLNS---ALYTTSRMLYSLAERGDAPRVFMKLN-KKGVPVQAV 338
Query: 384 --SAFLGIFTAAIALFTDLTVLLNLV-SIGTLFVFYMVANAVIYRRYVNLGTTNPQ---- 436
S F T + F V L LV S G + + + AV R N +
Sbjct: 339 LASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKLKANGEAIKI 398
Query: 437 -----PTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIF 483
P L++L + + I+ +++ F+P + + + G I+ + +F
Sbjct: 399 RMWLYPWLTWLVIIFICGILVSML--FIPSMRDEVLLTGLLTIIVLCSYLVF 448
|
GABA permease (gabP) catalyzes the translocation of 4-aminobutyrate (GABA) across the plasma membrane, with homologues expressed in Gram-negative and Gram-positive organisms. This permease is a highly hydrophobic transmembrane protein consisting of 12 transmembrane domains with hydrophilic N- and C-terminal ends. Induced by nitrogen-limited culture conditions in both Escherichia coli and Bacillus subtilis, gabP is an energy dependent transport system stimulated by membrane potential and has been observed adjacent and distant from other GABA degradation proteins. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 452 |
| >gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 86/377 (22%), Positives = 151/377 (40%), Gaps = 54/377 (14%)
Query: 65 GIGGMVGAGVFVTTGRASRLN-AGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFS 123
IGG +G G+F+ G +RL AGPA+ + Y I GL + E + P +G S
Sbjct: 39 AIGGAIGTGLFL--GAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVS 96
Query: 124 YLRVTFGEFAAFLTGSNLILEYVMSN----AAVARGFASYFGTAIGVPT----------- 168
Y R GE AA++ G + + M+ AVA + Y+G GVP
Sbjct: 97 YAREFLGEKAAYVAGWMYFINWAMTGIVDITAVAL-YMHYWGAFGGVPQWVFALAALTIV 155
Query: 169 -------AKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILF 221
KW +++ F I VLA+ LV+ V S + ++ T H++
Sbjct: 156 GTMNMIGVKWFAEMEFW---FALIKVLAIVTFLVVGTVFLGSGQP---LDGNTTGFHLI- 208
Query: 222 IAFVILMGFWKDPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPI 281
+ GFFP+G V ++ + V T A E K+P +P
Sbjct: 209 -------------TDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPK 255
Query: 282 GVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASF 340
++ + + + Y + ML+P+ A ++PF FS G ++ +++ +
Sbjct: 256 AINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFS--KLGVPYIGSIMNIVVLT 313
Query: 341 GILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIAL---- 396
L+SL + R + + P++ A++ + A L ++ + L
Sbjct: 314 AALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLV 373
Query: 397 -FTDLTVLLNLVSIGTL 412
++LN S+G +
Sbjct: 374 PSRVFEIVLNFASLGII 390
|
Length = 499 |
| >gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 82/370 (22%), Positives = 141/370 (38%), Gaps = 41/370 (11%)
Query: 86 AGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEY 145
GPA ++ + + LL A + E A P++G + + R GE + G +I+
Sbjct: 45 GGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEVIGWFAGWFMIIAQ 104
Query: 146 VMSNAAVARGFASYFGTAIGVPTAKWRLKVDG------LPDGFNEIDVLAVAVVLVITFV 199
+++ AA A + +P ++ G P G +L ++++ T +
Sbjct: 105 IVTAAAAA------IALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVI 158
Query: 200 ICYSTRDSSVVNMILTVLHILFIAFVILMGFWKDPKNPSGFFPYGAKGVFNGAAMVYLS- 258
C S VN I I+ + VI + F + P F G G +L
Sbjct: 159 NCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVS 218
Query: 259 -------YIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPY---D 308
+G+ + ++EE KNP + P + ++ + + LM M P
Sbjct: 219 GLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDG 278
Query: 309 MIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPA 368
+ AE + W V+ V + IL L +R M + R +PA
Sbjct: 279 RLAAEGLPYVLSAVLDSPW---GTVLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLPA 335
Query: 369 --WFARVHPKTSTPVNASAFLGIFTAAI--------ALFTDLTVLLNLVSIGTLFVFY-M 417
+RVHP+T TP+ S +G+ I ALF L V I +++ Y +
Sbjct: 336 SAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLAS----VCIVLIYLAYLL 391
Query: 418 VANAVIYRRY 427
V ++ RR
Sbjct: 392 VTVPLLLRRL 401
|
A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon. Length = 475 |
| >gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 90/402 (22%), Positives = 157/402 (39%), Gaps = 70/402 (17%)
Query: 54 KTLRWYDLVCFGIGGMVGAGVF-VTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFA 112
K L L +G M+G+G+F + + A+ AG ++I + I G+ L AF + A
Sbjct: 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGA-VLIGWVITGVGMLALAFSFQNLA 59
Query: 113 VDMP-VAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIG--VPTA 169
P + GG +SY + FG F F++ L + N A +A+ + +G P
Sbjct: 60 NKKPELDGGVYSYAKAGFGPFMGFISAWGYWLSAWLGNVA----YATLLFSTLGYFFPIF 115
Query: 170 KWRLKVDGLPDGFNEIDVLAVAVVL-VITFVICYSTRDSSVVNMILTVLHI----LFIAF 224
G N ++ +V+L + F++ ++ +N I T+ + +FI
Sbjct: 116 G---------GGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPLFVFIVI 166
Query: 225 VILM--------GFWKDPKNPSGFFPYGAKG--VFNGAAMVYLSYIGYDAVSTM---AEE 271
I FW N +G F G+ V N + +IG + S + AE+
Sbjct: 167 GIFAFKGDTFTNDFW---GNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK 223
Query: 272 VKNPVKDIPIGVSGSVII---VTVL-YCLM-----AASMSMLMPYDMIDAEAPFSGAFSG 322
+ K IG+ G + I V+VL Y +M A + M Y + +
Sbjct: 224 RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVL-- 281
Query: 323 KSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVN 382
I +G IL + L L A ++ + ++P +F + + P N
Sbjct: 282 -----------INIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKEN-ANGAPTN 329
Query: 383 ASAFLGIFTAAIALFTDLTVLLNLVSIGT-LFVFYMVANAVI 423
A L + I +F +L L S F + +A++
Sbjct: 330 A---LWLTNGLIQIF----LLTTLFSEQAYNFAISLATSAIL 364
|
Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2 [Transport and binding proteins, Amino acids, peptides and amines]. Length = 468 |
| >gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 6e-09
Identities = 84/357 (23%), Positives = 158/357 (44%), Gaps = 42/357 (11%)
Query: 69 MVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128
M+G+G+ + +++ G +IS+ + + A+ A+ + + +GG Y +
Sbjct: 19 MMGSGIIMLPTNLAQV--GTMSIISWLVTAVGAMALAWAFARAGMYSSKSGGMGGYAEYS 76
Query: 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVL 188
FG+ F+ + V++NAA+A +A+G + + I VL
Sbjct: 77 FGKAGNFMANYTYGVSLVIANAAIAI-------SAVGYGAELLGAHLSPVQIALATIGVL 129
Query: 189 AVAVVL-----VITFVICYSTRDSSVVNMILTVLHILFIAFVILMG-FWKDPKNP--SGF 240
+A VL IT I T V +I+ V+ I I + G + D NP +GF
Sbjct: 130 WIATVLNFGGARITGQISSFT----VWGVIIPVVGISIIGWFWFSGTLYADSWNPHHAGF 185
Query: 241 FPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAAS 300
F GV + ++ +++G ++ + V+NP K++PI V G I V+Y +
Sbjct: 186 F----SGVGSSISITLWAFLGLESACANTDVVENPKKNVPIAVLGGTIGAAVMYIISTNV 241
Query: 301 MSMLMP-YDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCV 359
++ ++P ++ ++ APF AFS + + +G ++ S ++LG +
Sbjct: 242 IAGIVPNMELANSNAPFGLAFS------QMFNPTVGKIVMGLMVISCFGSLLGWQFTIAE 295
Query: 360 IGRSSVVPAWFARVHPKT---STPVNASAFLGIFTAAIALFT-------DLTVLLNL 406
+ RSS +F ++ KT TP+ + I + +AL T T+L+NL
Sbjct: 296 VFRSSADEGYFPKIFSKTIGNGTPLIGMLIITILQSLLALMTISPSLSKQFTILVNL 352
|
Members of this protein family are putrescine-ornithine antiporter. They work together with an enzyme that decarboxylates ornithine to putrescine. This two-gene system has the net effect of removing a protein from the cytosol, providing transient resistance to acid conditions. Length = 430 |
| >gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 56/236 (23%), Positives = 102/236 (43%), Gaps = 16/236 (6%)
Query: 66 IGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYL 125
+G +G G+F + A ++ AGP+++++Y I G+ A + E +V P A Y
Sbjct: 21 LGSAIGTGLFYGSADAIKM-AGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYA 79
Query: 126 RVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAI-GVPTAKWRLKVDGLPDGFNE 184
+ G A ++TG E ++ A F Y G VP W L V +
Sbjct: 80 QENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLI---ICA 136
Query: 185 IDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAF------VILMGFWKDPKNPS 238
+++++V V + F + + ++++ MI+ + I+ + W +
Sbjct: 137 VNLMSVKVFGELEFWFSF-FKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSN----G 191
Query: 239 GFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLY 294
GFF G G+ MV +Y G + + A E K+P K IP ++ + + V Y
Sbjct: 192 GFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFY 247
|
Length = 457 |
| >gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 85/386 (22%), Positives = 151/386 (39%), Gaps = 58/386 (15%)
Query: 41 MSRVRAKSGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLC 100
M ++ ++T++ LV +GG++G G+F TG +++Y I L
Sbjct: 1 MPEPTSQQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALV 60
Query: 101 ALLSAFCYTEFAVDMPVAGG----AFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGF 156
L C E +V MP G A YL G A+L L + ++ A GF
Sbjct: 61 VYLVMQCLGELSVAMPETGAFHVYAARYLGPATGYTVAWLYW--LTWTVALGSSLTAAGF 118
Query: 157 ASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTV 216
+ VP W L L G N + STR + ++
Sbjct: 119 CMQYWFP-QVPVWPWCLLFCALIFGLNVV-----------------STRFFAEGEFWFSL 160
Query: 217 LHILFI-AFVILMGF-------WKDPKNPSGF--------FPYGAKGVFNGAAMVYLSYI 260
+ ++ I AF++L G +D G FP+G + V ++
Sbjct: 161 IKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFS 220
Query: 261 GYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAE-APFSGA 319
G + + A E +NP K IP+ + ++ + + + ++ L+P E +PF
Sbjct: 221 GTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLV 280
Query: 320 FSGKSDGWKWVSNVIGVGASFGILTSLLVA----MLGQARYMCVIGRSSVVPAWFARVHP 375
F + G + +++ +F ILT++L A + R + + +PA FAR+
Sbjct: 281 F--EKVGIPYAADIF----NFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLT- 333
Query: 376 KTSTPVNASAF------LGIFTAAIA 395
K P+ A + L +F++ +A
Sbjct: 334 KRGIPLTALSVSMLGGLLALFSSVVA 359
|
Length = 471 |
| >gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 57/252 (22%), Positives = 102/252 (40%), Gaps = 29/252 (11%)
Query: 234 PKNPSGFFP-YGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTV 292
+ FFP + G +Y+G +A ++ E++NP +D P+ + +I
Sbjct: 181 EIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAIC 240
Query: 293 LYCLMAASMSMLMPYDMIDAEA----PFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLV 348
L + S++ ++P I+ A F + +W+ VI +FG+L +
Sbjct: 241 LDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIAS 300
Query: 349 AMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTA-AIALFTD-------- 399
++G +R M + ++PA FA+++ K PV GI T+ A A+ T
Sbjct: 301 WIVGPSRGMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLS 359
Query: 400 ------LTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQP----TLSFLFLFSVTS 449
LTV++ L + F+ Y V +I + +L T P +
Sbjct: 360 FLIAIALTVVIYLCAYFLFFIGYFV---LILKHP-DLKRTFNIPGGIGGKLIIAGIGFLL 415
Query: 450 IIFTLIWHFVPP 461
IF F+PP
Sbjct: 416 SIFAFFISFLPP 427
|
Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 [Transport and binding proteins, Amino acids, peptides and amines]. Length = 507 |
| >gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 65/343 (18%), Positives = 138/343 (40%), Gaps = 32/343 (9%)
Query: 69 MVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128
M+G+GVF+ + + A + I G+ AL A + + ++ GG +Y R
Sbjct: 15 MMGSGVFLLPTNLAGIGAISIFGWIFTIIGVIAL--ALVFAKTSLIHERIGGIVAYARDA 72
Query: 129 FGEFAAFLTGSNLILEYVMSNAAV---ARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEI 185
FG F F + + + N A+ G+ ++F + PT
Sbjct: 73 FGPFIGFQSTIAYWISAWIGNVALLVAGVGYLAFFFPELKDPTVGTTYGC---------- 122
Query: 186 DVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMG-FWKDPKNPSGFFPYG 244
+ A+ ++ F+ + + + + + I V + G FW P+
Sbjct: 123 -IAAIIILWAFVFLASFGAKVAGRAQSFTAICGLAVILGVGIFGWFWFKPEMYLEV--IN 179
Query: 245 AKGVFNGAAMVYLS------YIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMA 298
A G N +A++ + ++G ++ +V+NP K +P ++I V Y
Sbjct: 180 ATGNSNFSAIIAAASIALWGFLGIESAVVSTGQVENPEKTVPKATVMGLLIAAVCYVASC 239
Query: 299 ASMSMLMPYD-MIDAEAPFSGA--FSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQAR 355
++ ++P++ +I++ APF+ A + ++ +++ + + A FG ++ + R
Sbjct: 240 TVIAGIIPHEVLINSAAPFADAAKYMFDNELAGNIASALSIIACFGSISGWFILQSEAPR 299
Query: 356 YMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFT 398
+ P +FA ++ K P+ + F I + L T
Sbjct: 300 ---AAAEQGLFPKFFADLN-KNDVPMKSLIFTAILMCCVLLLT 338
|
Members of this protein family are antiporters that exchange histidine with histamine, product of histidine decarboxylation. A system consisting of this protein, and a histidine decarboxylase encoded by an adjacent gene, creates decarboxylation/antiport proton-motive cycle that provides a transient resistance to acidic conditions. Length = 429 |
| >gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 76/360 (21%), Positives = 144/360 (40%), Gaps = 60/360 (16%)
Query: 105 AFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEY------VMSNAAVARGFAS 158
+ E A P GG F ++ FG FL L + V++ AV+ F
Sbjct: 48 SLVAAELATAWPEKGGVFRWVGEAFGARWGFLAIFMLWAQVTIWFPTVLTFGAVSLAF-- 105
Query: 159 YFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN------- 211
IG P A + G N++ VL V+V+ V + R +
Sbjct: 106 -----IG-PEATVDESLAG-----NKLYVL-VSVLFVYWLATFIALRGVAAFTKVAKWGG 153
Query: 212 MILTV-----LHILFIAFVILMGFWKDPKNPSGFFPYGAKGVFNG---AAMVYLSYIGYD 263
++ T+ L IL I++++ G + P FP F+ AA ++L Y G +
Sbjct: 154 IVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTN--FDNVVLAASIFLFYAGME 211
Query: 264 AVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSG- 322
+ ++V NP K+ PI + + + +++ L +++ ++P + I AF
Sbjct: 212 MNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNA 271
Query: 323 -KSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPV 381
G W+ ++ + G+L ++ + G + M + ++ +P +F + + K P+
Sbjct: 272 FHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTN-KNGMPI 330
Query: 382 NASAFLGIFTAAIAL--------------FTDLTVLLNLVSIGTLFVFYMVANAVIYRRY 427
+ GI + +++ + LTV+L LV +F + IY RY
Sbjct: 331 HIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMF------ASAIYLRY 384
|
Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain. Length = 474 |
| >gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 64/281 (22%), Positives = 113/281 (40%), Gaps = 52/281 (18%)
Query: 66 IGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCA----------LLSAFCY---TEFA 112
IGG +G G+F+ +G+ L AGP+I+ Y I G LLS Y ++FA
Sbjct: 32 IGGAIGTGLFMGSGKTISL-AGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFA 90
Query: 113 VDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWR 172
D+ G +A + TG +V++ A +Y W
Sbjct: 91 SDL-------------LGPWAGYFTGWTYWFCWVVTGIADVVAITAY--------AQFW- 128
Query: 173 LKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS--SVVNMILTVLHILFIAFVILMGF 230
L D + V+ + + L + V + + +++ ++ V I+ ++ M F
Sbjct: 129 --FPDLSDWVASLAVVLLLLSLNLATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHF 186
Query: 231 WKDPK----------NPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIP 280
+ P N G FP G G F G + +++G + V T A E K+P K +P
Sbjct: 187 -QSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLP 245
Query: 281 IGVSGSVIIVTVLYCL-MAASMSMLMPYDMIDAEAPFSGAF 320
++ I + + Y + MS+ ++ ++PF F
Sbjct: 246 RAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELF 286
|
Length = 469 |
| >gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 57/253 (22%), Positives = 104/253 (41%), Gaps = 21/253 (8%)
Query: 66 IGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYL 125
I G++GA +FV + A AGPA++++Y AGL ++ E AV P G +Y
Sbjct: 4 IAGVIGASLFVGSSVAIA-EAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYA 62
Query: 126 RVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAI-GVPTAKWRLKVDGLPDGFNE 184
G +A + G +V+ A A + + G+P + L + G N
Sbjct: 63 DKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSN- 121
Query: 185 IDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWKDPK--------N 236
+L+V F + ++ +L +F+ V + GF+ + +
Sbjct: 122 --LLSVKNYGEFEFWLALCK--------VIAILAFIFLGAVAISGFYPYAEVSGISRLWD 171
Query: 237 PSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCL 296
GF P G V + + S++G + V+ A E P K I + + +++ Y
Sbjct: 172 SGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLC 231
Query: 297 MAASMSMLMPYDM 309
+ L+P++M
Sbjct: 232 SIFVVVALIPWNM 244
|
Length = 446 |
| >gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 73/359 (20%), Positives = 143/359 (39%), Gaps = 50/359 (13%)
Query: 91 VISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNA 150
++S+ + + ++ A+ + + + +GG Y FG+ F+ + +++N
Sbjct: 41 ILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVSLLIANV 100
Query: 151 AVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVL-----VITFVICYSTR 205
A+A +A+G T + + + I VL + V IT I T
Sbjct: 101 AIAI-------SAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVT- 152
Query: 206 DSSVVNMILTVLHILFIAFVILMGFWKDPK------NPSGFFPYGAKGVFNGAAMVYLSY 259
V +I+ V+ + I + FW P NP + A G AM ++
Sbjct: 153 ---VWGVIIPVVGLSIIGW-----FWFSPSLYVAAWNPHHLPFFSAVGS--SIAMTLWAF 202
Query: 260 IGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMP-YDMIDAEAPFSG 318
+G ++ ++ V+NP +++PI V G + V+Y + ++ ++P ++ ++ APF
Sbjct: 203 LGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGL 262
Query: 319 AFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTS 378
AF+ + V ++ SLL A+ P F+RV K
Sbjct: 263 AFAQMFN--PTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVT-KVD 319
Query: 379 TPVNASAFLGIFTAAIALFT-------------DLTVLLNLV----SIGTLFVFYMVAN 420
PV + + + ++L T +L V+ N++ S+ L + VAN
Sbjct: 320 APVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVAN 378
|
Length = 438 |
| >gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 82/361 (22%), Positives = 147/361 (40%), Gaps = 49/361 (13%)
Query: 66 IGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLS-----------AFCYTEFAVD 114
+G G G+ T+ + + A PA+ +AG +L + A +
Sbjct: 1 LGLWQGIGLLSTSLLGTGVFAVPALAA--LVAGNNSLWAWPLLILLIFPIAIVFARLGRH 58
Query: 115 MPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLK 174
P AGG ++ + FG +TG L L + A A+ FG A+ + W+L
Sbjct: 59 FPHAGGPAHFVGMAFGPRLGRVTGW-LFLSVIPVGLPAALQIAAGFGQAL-FGWSSWQLL 116
Query: 175 VDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWKDP 234
+ ++L +A++ ++ + R +S + TV+ +L +A V+ + +W
Sbjct: 117 L---------AELLTLALLWLL------NLRGASSSANLQTVIALLIVALVVAI-WWAGD 160
Query: 235 KNPSGF-FPYGAK----GVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVII 289
P+ FP G+F +++ ++G +A + +A E KNP +D P + +++
Sbjct: 161 IKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLL 220
Query: 290 VTVLYCLMAASMSMLM---PYDMIDAEAPFSGAFS-GKSDGWKWVSNVIGVGASFGILTS 345
++Y A ++ +L D A A G F WV VIG A F S
Sbjct: 221 AGLVY--WACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFA---S 275
Query: 346 LLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLN 405
+ + AR + R P++ AR+ + PVNA + A+ L L
Sbjct: 276 VNIYTQSFARLVWSQAREGRPPSYLARLSAR-GVPVNALNAVL---GCCAVSILLIYALG 331
Query: 406 L 406
L
Sbjct: 332 L 332
|
Length = 410 |
| >gnl|CDD|182694 PRK10746, PRK10746, putative transport protein YifK; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 88/346 (25%), Positives = 139/346 (40%), Gaps = 56/346 (16%)
Query: 66 IGGMVGAGVFVTTGRASRLN-AGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSY 124
+GG +G G+F+ G AS L AGP+++++Y IAGL E PV G Y
Sbjct: 22 LGGTIGVGLFM--GAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVY 79
Query: 125 LRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNE 184
F +LT + ++ A G + TAIGV W P+
Sbjct: 80 AHRYMSPFFGYLTAWSYWFMWM------AVGISEI--TAIGVYVQFW------FPEMAQW 125
Query: 185 IDVLAVAVVLV----ITFVICYS--------TRDSSVVNMILTVLHILFIAF---VILMG 229
I L +AV LV + V Y + ++++ MI+ L ++F F +G
Sbjct: 126 IPAL-IAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIG 184
Query: 230 FWKDPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVII 289
F + GFF G KG +V SY G + + A E KNP + V +
Sbjct: 185 F-SNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWR 243
Query: 290 VTVLYCLMAASMSMLMPYDMIDAE-APFSGAFSGKSDGWKWVSNVIGVGASFGI-----L 343
+ + Y + + P++ I + +PF F+ IG+ A+ GI L
Sbjct: 244 ILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAK-----------IGITAAAGIINFVVL 292
Query: 344 TSLL----VAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASA 385
T+ L M R + + ++ +PA A+V + PV A
Sbjct: 293 TAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKV-SRHGVPVAGVA 337
|
Length = 461 |
| >gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 68/273 (24%), Positives = 118/273 (43%), Gaps = 36/273 (13%)
Query: 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTE 110
+R+ L+ L IGG +G G+FV +G A+ AGP ++SY + GL E
Sbjct: 13 LRRELKARHLTMIAIGGSIGTGLFVASG-ATISQAGPGGALLSYMLIGLMVYFLMTSLGE 71
Query: 111 FAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTA--IGVPT 168
A MPV+ G+F+ T+G+ YV A G+ ++ A I V
Sbjct: 72 LAAYMPVS-GSFA----TYGQ------------NYVEEGFGFALGWNYWYNWAVTIAVDL 114
Query: 169 AKWRLKVD-GLPDGFNEI-DVLAVAVVLVITFVICYSTRDSSV-VNMILTVLHILFIAFV 225
+L + PD I L + V+ ++ ++ ++ ++I I+FI
Sbjct: 115 VAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVG 174
Query: 226 ILM--GFWKDPKNPSGF---------FPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKN 274
+LM G +K + P+G+ F G + A +V S+ G + + A E ++
Sbjct: 175 VLMIIGIFKGAE-PAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESED 233
Query: 275 PVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPY 307
P K+IP V + + Y +S+++PY
Sbjct: 234 PAKNIPRAVRQVFWRILLFYVFAILIISLIIPY 266
|
Length = 489 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 576 | |||
| TIGR00906 | 557 | 2A0303 cationic amino acid transport permease. | 100.0 | |
| PRK15049 | 499 | L-asparagine permease; Provisional | 100.0 | |
| PRK11387 | 471 | S-methylmethionine transporter; Provisional | 100.0 | |
| PRK10746 | 461 | putative transport protein YifK; Provisional | 100.0 | |
| PRK10249 | 458 | phenylalanine transporter; Provisional | 100.0 | |
| COG0833 | 541 | LysP Amino acid transporters [Amino acid transport | 100.0 | |
| PRK10655 | 438 | potE putrescine transporter; Provisional | 100.0 | |
| PRK10644 | 445 | arginine:agmatin antiporter; Provisional | 100.0 | |
| TIGR00908 | 442 | 2A0305 ethanolamine permease. The three genes used | 100.0 | |
| PRK11357 | 445 | frlA putative fructoselysine transporter; Provisio | 100.0 | |
| TIGR00909 | 429 | 2A0306 amino acid transporter. | 100.0 | |
| COG1113 | 462 | AnsP Gamma-aminobutyrate permease and related perm | 100.0 | |
| PRK10580 | 457 | proY putative proline-specific permease; Provision | 100.0 | |
| PRK10836 | 489 | lysine transporter; Provisional | 100.0 | |
| TIGR01773 | 452 | GABAperm gamma-aminobutyrate permease. GabP is hig | 100.0 | |
| PRK10238 | 456 | aromatic amino acid transporter; Provisional | 100.0 | |
| KOG1289 | 550 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| PRK11049 | 469 | D-alanine/D-serine/glycine permease; Provisional | 100.0 | |
| PRK10435 | 435 | cadB lysine/cadaverine antiporter; Provisional | 100.0 | |
| TIGR03428 | 475 | ureacarb_perm permease, urea carboxylase system. A | 100.0 | |
| KOG1287 | 479 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| TIGR00905 | 473 | 2A0302 transporter, basic amino acid/polyamine ant | 100.0 | |
| TIGR00911 | 501 | 2A0308 L-type amino acid transporter. | 100.0 | |
| TIGR00907 | 482 | 2A0304 amino acid permease (GABA permease). | 100.0 | |
| TIGR00913 | 478 | 2A0310 amino acid permease (yeast). | 100.0 | |
| KOG1286 | 554 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| PRK10197 | 446 | gamma-aminobutyrate transporter; Provisional | 100.0 | |
| PRK11021 | 410 | putative transporter; Provisional | 100.0 | |
| TIGR03810 | 468 | arg_ornith_anti arginine/ornithine antiporter. Mem | 100.0 | |
| TIGR03813 | 474 | put_Glu_GABA_T putative glutamate/gamma-aminobutyr | 100.0 | |
| TIGR00910 | 507 | 2A0307_GadC glutamate:gamma-aminobutyrate antiport | 100.0 | |
| TIGR00930 | 953 | 2a30 K-Cl cotransporter. | 100.0 | |
| COG0531 | 466 | PotE Amino acid transporters [Amino acid transport | 100.0 | |
| PRK15238 | 496 | inner membrane transporter YjeM; Provisional | 100.0 | |
| PF13520 | 426 | AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G | 100.0 | |
| PF00324 | 478 | AA_permease: Amino acid permease; InterPro: IPR004 | 100.0 | |
| TIGR00837 | 381 | araaP aromatic amino acid transport protein. aroma | 99.97 | |
| TIGR00912 | 359 | 2A0309 spore germination protein (amino acid perme | 99.93 | |
| KOG2082 | 1075 | consensus K+/Cl- cotransporter KCC1 and related tr | 99.9 | |
| KOG1288 | 945 | consensus Amino acid transporters [Amino acid tran | 99.9 | |
| TIGR00796 | 378 | livcs branched-chain amino acid uptake carrier. tr | 99.87 | |
| PHA02764 | 399 | hypothetical protein; Provisional | 99.85 | |
| PF03222 | 394 | Trp_Tyr_perm: Tryptophan/tyrosine permease family; | 99.82 | |
| TIGR00814 | 397 | stp serine transporter. The HAAAP family includes | 99.81 | |
| KOG2083 | 643 | consensus Na+/K+ symporter [Inorganic ion transpor | 99.78 | |
| PRK10483 | 414 | tryptophan permease; Provisional | 99.76 | |
| PRK15132 | 403 | tyrosine transporter TyrP; Provisional | 99.74 | |
| PRK09664 | 415 | tryptophan permease TnaB; Provisional | 99.74 | |
| PF03845 | 320 | Spore_permease: Spore germination protein; InterPr | 99.7 | |
| PRK13629 | 443 | threonine/serine transporter TdcC; Provisional | 99.69 | |
| COG0814 | 415 | SdaC Amino acid permeases [Amino acid transport an | 99.64 | |
| PF01235 | 416 | Na_Ala_symp: Sodium:alanine symporter family; Inte | 99.41 | |
| TIGR00835 | 425 | agcS amino acid carrier protein. Members of the AG | 99.36 | |
| COG1115 | 452 | AlsT Na+/alanine symporter [Amino acid transport a | 99.29 | |
| KOG1304 | 449 | consensus Amino acid transporters [Amino acid tran | 99.17 | |
| KOG1303 | 437 | consensus Amino acid transporters [Amino acid tran | 99.16 | |
| PTZ00206 | 467 | amino acid transporter; Provisional | 99.15 | |
| PLN03074 | 473 | auxin influx permease; Provisional | 99.14 | |
| PRK11375 | 484 | allantoin permease; Provisional | 99.07 | |
| COG3949 | 349 | Uncharacterized membrane protein [Function unknown | 99.0 | |
| PF13906 | 51 | AA_permease_C: C-terminus of AA_permease | 98.86 | |
| PRK11017 | 404 | codB cytosine permease; Provisional | 98.82 | |
| COG1457 | 442 | CodB Purine-cytosine permease and related proteins | 98.8 | |
| PRK09442 | 483 | panF sodium/panthothenate symporter; Provisional | 98.75 | |
| PF01490 | 409 | Aa_trans: Transmembrane amino acid transporter pro | 98.7 | |
| TIGR02119 | 471 | panF sodium/pantothenate symporter. Pantothenate ( | 98.6 | |
| PF05525 | 427 | Branch_AA_trans: Branched-chain amino acid transpo | 98.57 | |
| TIGR02121 | 487 | Na_Pro_sym sodium/proline symporter. This family c | 98.55 | |
| PRK15419 | 502 | proline:sodium symporter PutP; Provisional | 98.54 | |
| TIGR00813 | 407 | sss transporter, SSS family. have different number | 98.51 | |
| COG1953 | 497 | FUI1 Cytosine/uracil/thiamine/allantoin permeases | 98.47 | |
| TIGR00800 | 442 | ncs1 NCS1 nucleoside transporter family. The NCS1 | 98.42 | |
| PF00474 | 406 | SSF: Sodium:solute symporter family; InterPro: IPR | 98.37 | |
| PRK15433 | 439 | branched-chain amino acid transport system 2 carri | 98.27 | |
| PRK10484 | 523 | putative transporter; Provisional | 98.25 | |
| PRK09395 | 551 | actP acetate permease; Provisional | 98.25 | |
| COG0591 | 493 | PutP Na+/proline symporter [Amino acid transport a | 98.19 | |
| PF01566 | 358 | Nramp: Natural resistance-associated macrophage pr | 98.14 | |
| TIGR02711 | 549 | symport_actP cation/acetate symporter ActP. Member | 98.11 | |
| PRK12488 | 549 | acetate permease; Provisional | 97.98 | |
| PRK00701 | 439 | manganese transport protein MntH; Reviewed | 97.94 | |
| TIGR03648 | 552 | Na_symport_lg probable sodium:solute symporter, VC | 97.92 | |
| COG1914 | 416 | MntH Mn2+ and Fe2+ transporters of the NRAMP famil | 97.91 | |
| TIGR02358 | 386 | thia_cytX probable hydroxymethylpyrimidine transpo | 97.9 | |
| PF02705 | 534 | K_trans: K+ potassium transporter; InterPro: IPR00 | 97.87 | |
| PF02028 | 485 | BCCT: BCCT family transporter; InterPro: IPR000060 | 97.79 | |
| COG0733 | 439 | Na+-dependent transporters of the SNF family [Gene | 97.68 | |
| COG1114 | 431 | BrnQ Branched-chain amino acid permeases [Amino ac | 97.67 | |
| KOG1305 | 411 | consensus Amino acid transporter protein [Amino ac | 97.6 | |
| PLN00151 | 852 | potassium transporter; Provisional | 97.42 | |
| PF02133 | 440 | Transp_cyt_pur: Permease for cytosine/purines, ura | 97.4 | |
| PLN00149 | 779 | potassium transporter; Provisional | 97.36 | |
| PLN00150 | 779 | potassium ion transporter family protein; Provisio | 97.16 | |
| PRK10745 | 622 | trkD potassium transport protein Kup; Provisional | 96.91 | |
| PRK09950 | 506 | putative transporter; Provisional | 96.77 | |
| TIGR00794 | 688 | kup potassium uptake protein. Proteins of the KUP | 96.69 | |
| PLN00148 | 785 | potassium transporter; Provisional | 96.35 | |
| PRK09928 | 679 | choline transport protein BetT; Provisional | 96.34 | |
| COG4147 | 529 | DhlC Predicted symporter [General function predict | 96.23 | |
| TIGR00842 | 453 | bcct choline/carnitine/betaine transport. properti | 96.04 | |
| KOG2466 | 572 | consensus Uridine permease/thiamine transporter/al | 95.79 | |
| PRK03356 | 504 | L-carnitine/gamma-butyrobetaine antiporter; Provis | 95.79 | |
| COG3158 | 627 | Kup K+ transporter [Inorganic ion transport and me | 95.41 | |
| COG4145 | 473 | PanF Na+/panthothenate symporter [Coenzyme metabol | 95.38 | |
| COG1292 | 537 | BetT Choline-glycine betaine transporter [Cell env | 94.97 | |
| PF00209 | 523 | SNF: Sodium:neurotransmitter symporter family; Int | 94.78 | |
| KOG4303 | 524 | consensus Vesicular inhibitory amino acid transpor | 91.93 | |
| PF02554 | 376 | CstA: Carbon starvation protein CstA; InterPro: IP | 91.11 | |
| PF02667 | 453 | SCFA_trans: Short chain fatty acid transporter; In | 89.93 | |
| PF12794 | 340 | MscS_TM: Mechanosensitive ion channel inner membra | 87.65 | |
| KOG2349 | 585 | consensus Na+:iodide/myo-inositol/multivitamin sym | 85.58 | |
| PF01102 | 122 | Glycophorin_A: Glycophorin A; InterPro: IPR001195 | 85.42 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 83.28 |
| >TIGR00906 2A0303 cationic amino acid transport permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=543.73 Aligned_cols=498 Identities=38% Similarity=0.659 Sum_probs=411.5
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 127 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 127 (576)
++++++|+++.++++.+++|.++|+|+|..++......+||+.+++|+++++.+++.+++|+|+++++|++||.|+|+++
T Consensus 22 ~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~ 101 (557)
T TIGR00906 22 EESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYV 101 (557)
T ss_pred cccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHH
Confidence 34579999999999999999999999999999887555899999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCC--chhhHHHHHHHHHHHHHHHhcch
Q 039800 128 TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGF--NEIDVLAVAVVLVITFVICYSTR 205 (576)
Q Consensus 128 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~ 205 (576)
.+|+.+||++||.++++|....+..+..++.|+..+++.....+.........+. .....++++++++++++|++|+|
T Consensus 102 ~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik 181 (557)
T TIGR00906 102 TVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVK 181 (557)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchh
Confidence 9999999999999999999999999999999998876532221111000000000 11235677777888899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCC--------CCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcC
Q 039800 206 DSSVVNMILTVLHILFIAFVILMGFWK-DPKNPS--------GFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPV 276 (576)
Q Consensus 206 ~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~--------~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~ 276 (576)
.++++|++++.++++.++++++.++.+ +.+|+. ++.|.|+.+++.++..++|+|.|+|.+++++||+|||+
T Consensus 182 ~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~ 261 (557)
T TIGR00906 182 ESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ 261 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc
Confidence 999999999999999998888888776 444543 67777888999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039800 277 KDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARY 356 (576)
Q Consensus 277 r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 356 (576)
||+||+++.++++++++|++.+++.....|+++++.++|+..+++ ..|.++...++.++++.+.+++.++.+++.||+
T Consensus 262 r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~--~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRi 339 (557)
T TIGR00906 262 RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFE--YVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRV 339 (557)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHH--HcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888889999998 778788899999999999999999999999999
Q ss_pred HHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCC
Q 039800 357 MCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGT-TNP 435 (576)
Q Consensus 357 l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~ 435 (576)
+|+|||||.+|++|+|+|||+++|++++++.++++.++.++.+++.+.++.+++.++.|.+.+++++++|++++.+ ++|
T Consensus 340 l~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~ 419 (557)
T TIGR00906 340 IYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQA 419 (557)
T ss_pred HHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 9999999999999999999999999999999999988888888999999999999999999999999998775211 001
Q ss_pred -----------------------C--chhHHHHHHHHHHHH-HHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccC
Q 039800 436 -----------------------Q--PTLSFLFLFSVTSII-FTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQ 489 (576)
Q Consensus 436 -----------------------~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (576)
. ..-..+..+..+..+ ....|......+|.. .+.....+..+.......+.|+
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 498 (557)
T TIGR00906 420 KDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSI-ALLTLFLVLFLLVVLTIWRQPQ 498 (557)
T ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhH-HHHHHHHHHHHHHHHHHhcCCC
Confidence 0 000111111111111 112222111223333 3344444444555555666666
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhccccc
Q 039800 490 AKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHASFD 548 (576)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 548 (576)
.+.+++||+|.+|++|.++++.|++++.+++..+|+.+.+|+++|+++|+.|++||+++
T Consensus 499 ~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~ 557 (557)
T TIGR00906 499 NKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557 (557)
T ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 56689999999999999999999999999999999999999999999999999999764
|
|
| >PRK15049 L-asparagine permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-55 Score=464.10 Aligned_cols=364 Identities=20% Similarity=0.336 Sum_probs=312.4
Q ss_pred CCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 49 GSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 49 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
++++||+++.+++.++++|.+||+|+|..++..+.. +||..+++|++++++.++.+.+++|+++++|++||.|+|+++.
T Consensus 23 ~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~-aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 23 EEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQM-AGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred chhhhccCCHhHhHHHhhhccccchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 345999999999999999999999999999999876 8998888999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVP-TAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
+||..||++||.+|++|....+......+.+...+-..+ .+ .+.++.+++++++.+|++|+|..
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~iN~~gvk~~ 166 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVP---------------QWVFALAALTIVGTMNMIGVKWF 166 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998777666666666665331110 11 12567777888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc----CC--CC---C------CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWK----DP--KN---P------SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~----~~--~~---~------~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
+++|.+++.+|++.++.+++.++.. ++ .+ + .++.|+|+.+++.++..++|+|.|+|.+++++||+
T Consensus 167 ~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~ 246 (499)
T PRK15049 167 AEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC 246 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 9999999999988887776665432 11 11 1 23445667777778888999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
|||+|++|||+..++..+.++|++..+++....|+++++. .+|+.++++ ..|.++...++.+..+++.+++.++.++
T Consensus 247 knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~--~~g~~~~~~ii~~~ilia~~ss~ns~~~ 324 (499)
T PRK15049 247 KDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFS--KLGVPYIGSIMNIVVLTAALSSLNSGLY 324 (499)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHH--HcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888753 579999988 7788888999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 352 GQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYR 425 (576)
Q Consensus 352 ~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 425 (576)
+.||++|+|||||.+|++|+|+| |+++|++|++++.++.++..++ ..++.+.++.+.+.++.|.+++++.+++
T Consensus 325 ~~sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~ 403 (499)
T PRK15049 325 CTGRILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRL 403 (499)
T ss_pred HHHHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 8899999999988876543222 3588899999999999999999999998
Q ss_pred hhccCC
Q 039800 426 RYVNLG 431 (576)
Q Consensus 426 r~~~~~ 431 (576)
|++.++
T Consensus 404 R~~~~~ 409 (499)
T PRK15049 404 RKAIKE 409 (499)
T ss_pred HHhhhh
Confidence 876443
|
|
| >PRK11387 S-methylmethionine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=453.00 Aligned_cols=420 Identities=19% Similarity=0.273 Sum_probs=344.7
Q ss_pred CCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 50 SDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 50 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
+++||+++.++++++++|.++|+|+|..++..+.. +|| ..+++|+++++++++.+++++|+++++|++||.|.|+++.
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~-~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIIST-TGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 46899999999999999999999999999999877 787 5899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
+||.+||.+||.+|+++....+......+.+++.+++. .+. ....+++.++++++|++|+|..+
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~---------------~~~~~~~~~~~~~in~~gvk~~~ 152 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ-VPV---------------WPWCLLFCALIFGLNVVSTRFFA 152 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-CcH---------------HHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999988887776666666544331 111 13445556778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-------CCC-------CC--CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK-------DPK-------NP--SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~-------~~~-------~~--~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
++|.+.+.+|++.++.+++.++.. +.. ++ .++.+++..+++.++..++|+|.|+|.+++++||+
T Consensus 153 ~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 232 (471)
T PRK11387 153 EGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET 232 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 999999999999887666655431 111 11 12234555678888899999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC-CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMID-AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
|||+||+|||+..++..+.++|++..+++....|.++.+ +++|+.++++ ..|.++...++.+.++++.+++.++.++
T Consensus 233 knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~--~~g~~~~~~ii~~~~~~s~~~~~~~~~~ 310 (471)
T PRK11387 233 ENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFE--KVGIPYAADIFNFVILTAILSAANSGLY 310 (471)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHH--HcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998889987764 4679999988 7787899999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 352 GQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYR 425 (576)
Q Consensus 352 ~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 425 (576)
+.||++|+|||||.+|++|+|+| |+++|++|++++.+++++..+. ..++.+.++.+...++.|++.+++.+++
T Consensus 311 ~~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~l 389 (471)
T PRK11387 311 ASGRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMF 389 (471)
T ss_pred HhhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 6899999999887655443332 2356678888889999999999999998
Q ss_pred hhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHH
Q 039800 426 RYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIP 505 (576)
Q Consensus 426 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (576)
|++++++.+ +..+++||.|.+|+.|
T Consensus 390 r~~~~~~~~-------------------------------------------------------~~~~~~~~~~~~~~~~ 414 (471)
T PRK11387 390 RRRHLRDGK-------------------------------------------------------ALSELAYRAPWYPLTP 414 (471)
T ss_pred HHHHHhcCC-------------------------------------------------------CCCCCCccCCCccHHH
Confidence 887664322 1235678888899999
Q ss_pred HHHHHHHHHHHhcCChh-----HHHHHHHHHHHHHHHHHHhhhc
Q 039800 506 CISIFLNIFLLGSLDGP-----SYVRFGFFSALAVLVYLLYSVH 544 (576)
Q Consensus 506 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~y~~~~~~ 544 (576)
+++++.+.+++...... .......+++++++.|..++|+
T Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T PRK11387 415 ILGFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRL 458 (471)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999888777654221 2344556667777777666544
|
|
| >PRK10746 putative transport protein YifK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-53 Score=445.43 Aligned_cols=420 Identities=18% Similarity=0.297 Sum_probs=352.7
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 127 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 127 (576)
.++++||+++.+|+.++++|.+||+|+|..++..+.. +||..+++|++++++.++++++++|+++++|++||.|+|++|
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~-aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~ 82 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKW-AGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHR 82 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4567999999999999999999999999999999887 899989999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 128 TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 128 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
.+||.+||.+||.+|+++....+.+....+.|++.+++. .+. ..+..+++++.+.+|++|+|..
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-~~~---------------~~~~~~~~~~~~~lN~~gv~~~ 146 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-MAQ---------------WIPALIAVALVALANLAAVRLY 146 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-Cch---------------HHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999998888888888888776542 111 1455667778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc------C------CCCCC---CCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWK------D------PKNPS---GFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~------~------~~~~~---~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
+++|..++.+|+..++++++.++.. + .+++. ++.++|+.|+..++..+.|+|.|+|.+++.+||+
T Consensus 147 ~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~ 226 (461)
T PRK10746 147 GEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA 226 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 9999999999988876666554321 1 12221 2345678899999999999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
|||+|++|||+..++..+.++|++..+++....|+++++. ++|+.++++ ..|.+....++.+..+.+.+++.|+.++
T Consensus 227 knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~--~~g~~~~~~i~~~~il~a~~s~~n~~~~ 304 (461)
T PRK10746 227 KNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFA--KIGITAAAGIINFVVLTAALSGCNSGMY 304 (461)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHH--HhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999989999998864 569999998 6687888889999999999999999999
Q ss_pred hHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHH---Hh-----hcHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 352 GQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIA---LF-----TDLTVLLNLVSIGTLFVFYMVANAVI 423 (576)
Q Consensus 352 ~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~---~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~ 423 (576)
+.||++++|||||.+|++|+|+| |+|+|++|++++.+...+.. +. ..++.+.++++.+.++.|++++++.+
T Consensus 305 ~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i 383 (461)
T PRK10746 305 SCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQL 383 (461)
T ss_pred HHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 88999999998865433211 11 24788999999999999999999999
Q ss_pred HHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccH
Q 039800 424 YRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPW 503 (576)
Q Consensus 424 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (576)
++||++|+. .++++||.|.+|+
T Consensus 384 ~~r~~~~~~----------------------------------------------------------~~~~~~~~~~~p~ 405 (461)
T PRK10746 384 RFRRAHKAA----------------------------------------------------------IASHPFRSILFPW 405 (461)
T ss_pred HHHHhcccc----------------------------------------------------------ccCCCCcCCCccH
Confidence 999886641 2345677788888
Q ss_pred HHHHHHHHHHHHHhcC--C---hhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 504 IPCISIFLNIFLLGSL--D---GPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 504 ~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
.++++++.++.++..+ + ..+......++.+..+.|+.|++.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 452 (461)
T PRK10746 406 ANYLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNR 452 (461)
T ss_pred HHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888888777775543 1 2345555666777888887776654
|
|
| >PRK10249 phenylalanine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-53 Score=445.96 Aligned_cols=362 Identities=23% Similarity=0.375 Sum_probs=315.2
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 127 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 127 (576)
++++++|+++.+++..+++|.++|+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|++||.|+|+++
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~-aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQM-AGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 5568999999999999999999999999999999886 899989999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 128 TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 128 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
.+||.+||.+||.+|+++....+.+....+.|++.+++.. + ...+..+++++.+.+|++|+|..
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~---------------~~~~~~~~~~l~~~lN~~gv~~~ 157 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV-P---------------TWIWAAAFFIIINAVNLVNVRLY 157 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-c---------------HHHHHHHHHHHHHHHHHhcchhh
Confidence 9999999999999999998888888887888887655321 1 12556777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc----C------CCC-C--CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcC
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWK----D------PKN-P--SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKN 274 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~----~------~~~-~--~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~ 274 (576)
+++|.+++.+|++.++.+++.++.. + .++ + .++.++|+.++..++...+|+|.|+|.+++++||+||
T Consensus 158 ~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~ 237 (458)
T PRK10249 158 GETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARD 237 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcC
Confidence 9999999999988776666554422 1 111 1 1234567888999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 039800 275 PVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQ 353 (576)
Q Consensus 275 p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (576)
|+|++||++..++..+.++|++..++.....|+++... ++|+.++++ ..+.++...++.+..+++.+++.++.+++.
T Consensus 238 P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (458)
T PRK10249 238 PEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFH--NLDSNVVASALNFVILVASLSVYNSGVYSN 315 (458)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHH--HcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888877643 579999988 556688888899999999999999999999
Q ss_pred HHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039800 354 ARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYRRY 427 (576)
Q Consensus 354 sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 427 (576)
||++|+|||||.+|++|+|+| |+++|++|++++.+++.+..++ ..++.+.++.+...++.|++++++.+++|+
T Consensus 316 sR~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 316 SRMLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 7899999999999988766544 257889999999999999999999999886
Q ss_pred cc
Q 039800 428 VN 429 (576)
Q Consensus 428 ~~ 429 (576)
++
T Consensus 395 ~~ 396 (458)
T PRK10249 395 AM 396 (458)
T ss_pred HH
Confidence 43
|
|
| >COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-54 Score=433.01 Aligned_cols=421 Identities=20% Similarity=0.318 Sum_probs=368.7
Q ss_pred CCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHh
Q 039800 51 DMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTF 129 (576)
Q Consensus 51 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 129 (576)
++||+|..+|+.++++|..||+|.|...+..+.. +||. ++++|++.+++.+++..+++||++.+|.+|+...|+.|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~-aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQ-AGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 6999999999999999999999999999999987 9997 8999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 130 GEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 130 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
+|.+||..||.||+.|....+.+..+.+..++.+++.+.+.+ ++..++.+++.++|.+++|.++.
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~---------------~w~~iF~~~i~~iN~~~Vk~fGE 184 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPW---------------IWIAIFLVLIFLLNLFGVKGFGE 184 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCChH---------------HHHHHHHHHHHHHHHhcccccce
Confidence 999999999999999999999999999999999875543322 67788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc----CC-CCC--------CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcC
Q 039800 210 VNMILTVLHILFIAFVILMGFWK----DP-KNP--------SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPV 276 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~~i~~~~~----~~-~~~--------~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~ 276 (576)
.+.++..+|++.++.+++.++.. .+ +.. .+.+++|+.|+...+..+.|+|.|.|.+...++|.|||+
T Consensus 185 ~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~ 264 (541)
T COG0833 185 TEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR 264 (541)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCch
Confidence 99999999999999998888765 11 111 233457799999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC---------CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHH
Q 039800 277 KDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMID---------AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLL 347 (576)
Q Consensus 277 r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (576)
|++|||+.-.+..+.++|++..+++...+|+++-+ ..+|+..+++ ..|.+....++++.++.+.+++.|
T Consensus 265 K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~--~~Gi~~~~~imNaVIL~svlSa~N 342 (541)
T COG0833 265 KSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIK--NAGIPVAASIMNAVILTSVLSAAN 342 (541)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHH--hcCCccchHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999987732 2469999999 889999999999999999999999
Q ss_pred HHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHH
Q 039800 348 VAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANA 421 (576)
Q Consensus 348 ~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~ 421 (576)
+.++++||++|+||+||..||+|+|+| |+|+|++|++++.+++++-.+. ..|+++.++.+.+.++.|..++++
T Consensus 343 S~lYasSR~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~s 421 (541)
T COG0833 343 SGLYASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLS 421 (541)
T ss_pred ccchHHHHHHHHHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 8899999999999888654443 269999999999999999999999
Q ss_pred HHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccc
Q 039800 422 VIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLM 501 (576)
Q Consensus 422 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (576)
.+++|+..+.+.| ..+..+||.|++
T Consensus 422 hirFR~A~~~QG~-------------------------------------------------------s~~~L~yks~~~ 446 (541)
T COG0833 422 HIRFRRAMKAQGR-------------------------------------------------------SLDELPYKSPFG 446 (541)
T ss_pred HHHHHHHHHHcCC-------------------------------------------------------ChhhcCccCCCc
Confidence 9999987665432 234678999999
Q ss_pred cHHHHHHHHHHHHHHhcCChhHHH----------HHHHHHHHHHHHHHHhhhcc
Q 039800 502 PWIPCISIFLNIFLLGSLDGPSYV----------RFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~y~~~~~~~ 545 (576)
|+.|+.++++|+.++...+|.... ....-+-+.++.|+.|+..+
T Consensus 447 p~g~~~~~~~~~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~i~~y~~yk~~~ 500 (541)
T COG0833 447 PYGPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIAIYIGYKLYK 500 (541)
T ss_pred cHHHHHHHHHHHHHHHHcchheeecCCccHHHHHHHHHHHHHHHHHHHHheeEe
Confidence 999999999999999986554432 22222334555666655443
|
|
| >PRK10655 potE putrescine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=440.86 Aligned_cols=369 Identities=17% Similarity=0.283 Sum_probs=314.0
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
+||+++.++.+.++++.++|+|+|..++... . +|+..+++|++++++.++.+++|+|+++++|++||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~-~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-Q-VGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 4788999999999999999999999987753 4 6888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (576)
..||++||.+++++.......+.....|+..+++...+.+. ..++.++++++++.+|++|+|..+++|
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~------------~~~~~~~~l~~~~~ln~~g~~~~~~i~ 149 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQ------------ICLATIGVLWLCTVANFGGARITGQIS 149 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHH------------HHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99999999999999887777777777888777653322221 225566777888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-CCCCCC-CCCCCc---hhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHH
Q 039800 212 MILTVLHILFIAFVILMGFWK-DPKNPS-GFFPYG---AKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGS 286 (576)
Q Consensus 212 ~~~~~~~l~~~~~~~i~~~~~-~~~~~~-~~~~~g---~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~ 286 (576)
++.+..+++.++++++.++.. +++++. ++.+.+ +.++..++..++|+|.|+|.+++++||+|||+||+||+++.+
T Consensus 150 ~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~ 229 (438)
T PRK10655 150 SVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGG 229 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHH
Confidence 999999988887777766554 444442 233333 356777888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcCC-CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCC
Q 039800 287 VIIVTVLYCLMAASMSMLMPYDMID-AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSV 365 (576)
Q Consensus 287 ~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 365 (576)
..+++++|++...+.....|++++. ++.|+.+++++ ..| ++...++.+..+++.+++.+++..+.+|++++++|||.
T Consensus 230 ~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~-~~g-~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~ 307 (438)
T PRK10655 230 TLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQ-MFN-PTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGY 307 (438)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHH-HcC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999998888888877764 45788888874 455 67777888888899999999999999999999999999
Q ss_pred CchhhhhhcCCCCCchhHHHHHHHHHHHHHHh-------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 039800 366 VPAWFARVHPKTSTPVNASAFLGIFTAAIALF-------TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQP 437 (576)
Q Consensus 366 lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 437 (576)
+|++|+|+| |+++|+++++++.+++.++.+. ..++.+.++.+...++.|.+.+++++++|+|+++.+||+|
T Consensus 308 lP~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~ 385 (438)
T PRK10655 308 FPKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAK 385 (438)
T ss_pred hhHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhH
Confidence 999999999 6899999999999887665543 3578899999999999999999999999988877666665
|
|
| >PRK10644 arginine:agmatin antiporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-52 Score=438.71 Aligned_cols=418 Identities=19% Similarity=0.271 Sum_probs=339.5
Q ss_pred CCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 49 GSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 49 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
+.+++|+++.++.+.+++|.++|+|+|..++.... .|+..+++|+++++..++.+++++|+++++|++||.|+|+++.
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~--~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~ 80 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRC 80 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHH
Confidence 45678999999999999999999999999987654 3556788999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
+||.+||++||.+|+.+.............|...+++...+.+. ..++.++++++++.+|++|+|..+
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ln~~gvk~~~ 148 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLV------------LTITCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHH------------HHHHHHHHHHHHHHHHHhchHHHH
Confidence 99999999999999988777777666666777766543222221 225667777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCC-CCC---CchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHH
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK-DPKNPSG-FFP---YGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGV 283 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~-~~~---~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai 283 (576)
++|++.+..+++.++++++.++.. +.+++.+ +.+ .++.++..++..++|+|.|+|.+++++||+|||+|++|||+
T Consensus 149 ~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai 228 (445)
T PRK10644 149 RVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHH
Confidence 999999999998887777766554 3333221 111 23556777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcCC-CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 039800 284 SGSVIIVTVLYCLMAASMSMLMPYDMID-AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGR 362 (576)
Q Consensus 284 ~~~~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 362 (576)
+.++.+++++|++..++.....|++++. ++.|+.+++++ ..| ++...++.+..+++.+++.++++...+|++++|||
T Consensus 229 ~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~-~~g-~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ar 306 (445)
T PRK10644 229 IGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARM-ALG-DTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD 306 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHH-Hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988887764 46789888884 555 66777888888889999999999999999999999
Q ss_pred cCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh-------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 039800 363 SSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF-------TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNP 435 (576)
Q Consensus 363 dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 435 (576)
||.+||+|+|+| |+++|++|++++.+++.++.+. ..++.+.++.+...+++|++++++.+++|+|+++.+|
T Consensus 307 dg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~- 384 (445)
T PRK10644 307 DGLFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKAR- 384 (445)
T ss_pred CCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc-
Confidence 999999999999 5799999999999988776544 2488899999999999999999999998877553222
Q ss_pred CchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHH
Q 039800 436 QPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFL 515 (576)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (576)
|..++.|+++++.++++
T Consensus 385 ---------------------------------------------------------------p~~~~~~~~~~~~~~~~ 401 (445)
T PRK10644 385 ---------------------------------------------------------------PAYLAVTLIAFVYCIWA 401 (445)
T ss_pred ---------------------------------------------------------------cchhHHHHHHHHHHHHH
Confidence 23456777788888777
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHH-Hhhhcccc
Q 039800 516 LGSLDGPSYVRFGFFSALAVLVYL-LYSVHASF 547 (576)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~~y~-~~~~~~~~ 547 (576)
+...+..+.....++.+++.+.|+ .++|||+.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 434 (445)
T PRK10644 402 VVGSGAKEVMWSFVTLMVITAFYALNYNRLHKN 434 (445)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 776665555555555666666664 45555433
|
|
| >TIGR00908 2A0305 ethanolamine permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-52 Score=438.08 Aligned_cols=421 Identities=20% Similarity=0.328 Sum_probs=345.7
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~ 126 (576)
+++++||+++.++.++++++.++| |.+...+..+.. +||. .++++++++++.++.+++++|+++++|++||.|.|++
T Consensus 1 ~~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~-~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~ 78 (442)
T TIGR00908 1 QHRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQ-GGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFAR 78 (442)
T ss_pred CCchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 357799999999999999999997 777666666555 7875 7889999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchh
Q 039800 127 VTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRD 206 (576)
Q Consensus 127 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 206 (576)
+.+||..||++||.+++++....+.++..+++|+..+++..+ . ...+.+++++.+++|++|+|.
T Consensus 79 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~-~---------------~~~~~~~~~~~~~ln~~g~~~ 142 (442)
T TIGR00908 79 RAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP-G---------------WLAALVFYIVFIGINILGVGE 142 (442)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-h---------------hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764321 1 156667777888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCC--------CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCC
Q 039800 207 SSVVNMILTVLHILFIAFVILMGFWK-DPKNP--------SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVK 277 (576)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~--------~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r 277 (576)
.+++|.+.+.++++.+++++.....+ +..++ .++.+.++.+++.++..++|+|.|+|.+++++||+|||+|
T Consensus 143 ~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r 222 (442)
T TIGR00908 143 AAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR 222 (442)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999998888765554443332 22121 2344556678899999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC-CCchHHHhhccCCCCh-hHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039800 278 DIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMID-AEAPFSGAFSGKSDGW-KWVSNVIGVGASFGILTSLLVAMLGQAR 355 (576)
Q Consensus 278 ~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR 355 (576)
|+||+++.+..++.++|+..........|.+++. +++|+.+++++ ..|. ++...++.+..+++.+++.++.+.+.||
T Consensus 223 ~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~-~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR 301 (442)
T TIGR00908 223 DIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALES-IYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSR 301 (442)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHH-HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877766667766664 45688888874 5553 4566777788888889999999999999
Q ss_pred HHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 039800 356 YMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNP 435 (576)
Q Consensus 356 ~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 435 (576)
++++|||||.+|++|+|+| |+|+|++|++++.++++++.+.++.+.+.++.+...++.|.+.+++++++|+++|+.+|
T Consensus 302 ~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~r- 379 (442)
T TIGR00908 302 QIFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMER- 379 (442)
T ss_pred HHHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-
Confidence 9999999999999999999 99999999999999998887777778888889999999999999999999988666444
Q ss_pred CchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHH
Q 039800 436 QPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFL 515 (576)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (576)
+||.|..++.|+++++.+.++
T Consensus 380 -----------------------------------------------------------p~~~p~~~~~~~l~~~~~~~~ 400 (442)
T TIGR00908 380 -----------------------------------------------------------PYRTPGGILTPGVALVLACVA 400 (442)
T ss_pred -----------------------------------------------------------CccCCCcchHHHHHHHHHHHH
Confidence 455566777888888887777
Q ss_pred HhcC---ChhHHHHHHHHHHHHHHHHHHhhhccccc
Q 039800 516 LGSL---DGPSYVRFGFFSALAVLVYLLYSVHASFD 548 (576)
Q Consensus 516 ~~~~---~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 548 (576)
+..+ ++..+.....+.++..++|+.|+|+|..+
T Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 401 LVTGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 6653 44334444566667777777777666444
|
The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. |
| >PRK11357 frlA putative fructoselysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=441.26 Aligned_cols=422 Identities=23% Similarity=0.376 Sum_probs=343.6
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~ 126 (576)
+++++||++++++.++++++.++|+|+|..++......+++. .+++|++++++.++.+++++|+++++|++||.|.|++
T Consensus 2 ~~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~ 81 (445)
T PRK11357 2 GSQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLK 81 (445)
T ss_pred CcccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHH
Confidence 356799999999999999999999999999998776645554 7889999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcch
Q 039800 127 VTFGEFAAFLTGSN-LILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTR 205 (576)
Q Consensus 127 ~~~g~~~g~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 205 (576)
+.+||.+||+++|. ++.......+.++...++|+...++.+. + ....++.+++.+++.+|.+|+|
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~--~------------~~~~~~~~~~~~~~~ln~~gv~ 147 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDP--L------------LGKFIAAGLIIAFMLLHLRSVE 147 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--H------------HHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999996 4445566677777788888776543211 0 0124566667778899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCC---C--CCCc-hhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCc
Q 039800 206 DSSVVNMILTVLHILFIAFVILMGFWK-DPKNPSG---F--FPYG-AKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKD 278 (576)
Q Consensus 206 ~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~---~--~~~g-~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~ 278 (576)
..+++|++++..+++.++++++.++.. +.+++.+ . ...+ +.++..++..++|+|.|+|.+++++||+|||+||
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~ 227 (445)
T PRK11357 148 GGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKT 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcccc
Confidence 999999999999999887777766543 3222211 1 1122 5678888999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccC-CCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039800 279 IPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGK-SDGWKWVSNVIGVGASFGILTSLLVAMLGQARY 356 (576)
Q Consensus 279 ~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 356 (576)
+|||+..++.+++++|++.+++.....|.+++.. +.|+.+++++. ..| ++...++.+.++++.+++.++++.+.+|+
T Consensus 228 iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 306 (445)
T PRK11357 228 MPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALG-STAGIFVAITAMIVILGSLSSCVMYQPRL 306 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 9999999999999999999999988888887743 56888877720 133 55666777788888999999999999999
Q ss_pred HHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 039800 357 MCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQ 436 (576)
Q Consensus 357 l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 436 (576)
+|+|||||.+|++|+|+|||+++|++|++++++++.++.+..+++.+.++.+......|.+...+++++|++++
T Consensus 307 ~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~------ 380 (445)
T PRK11357 307 EYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDD------ 380 (445)
T ss_pred HHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCCC------
Confidence 99999999999999999999999999999999999888888889999998888888889888888887775522
Q ss_pred chhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHHH
Q 039800 437 PTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLL 516 (576)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (576)
.+++||+|..|+.|+++++.+.+++
T Consensus 381 -------------------------------------------------------~~~~~k~p~~~~~~~~~~~~~~~~~ 405 (445)
T PRK11357 381 -------------------------------------------------------YKPLWRTPAFGLMTTLAIASSLILV 405 (445)
T ss_pred -------------------------------------------------------CCCCcccCCchHHHHHHHHHHHHHH
Confidence 1245677788888888888887776
Q ss_pred hc----CChhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 517 GS----LDGPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 517 ~~----~~~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
.. ....++.....++++|+++|+.+++|+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 438 (445)
T PRK11357 406 ASTFVWAPIPGLICAVIVIATGLPAYAFWAKRS 438 (445)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhhhHHhheechh
Confidence 43 233344556778888999997766654
|
|
| >TIGR00909 2A0306 amino acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=434.27 Aligned_cols=424 Identities=34% Similarity=0.553 Sum_probs=365.9
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
+||+++.++.+.+.++.++|+|++..++..... +|+..+++|+++++..++.+++++|+++++|++||.|+|+++.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~-~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGK-AGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 579999999999999999999999999987766 7888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGV---PTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
..|++.+|.+++.+....+.....+++++..+++. +.+.+... .+.++......+++++++++++|++|+|..+
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~ 156 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTA---KPGNGGVFNLPALLIVLFLTYILYLGAKESG 156 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhc---CCcccccccHHHHHHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999998877652 21111000 0001111124567788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHH
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK-DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSV 287 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~ 287 (576)
|++.+.+.++++.++++++.++.+ +..++.++.+.++.++..++...+|+|.|+|.+.+++||+|||+|++||++..++
T Consensus 157 ~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~ 236 (429)
T TIGR00909 157 KVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSL 236 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHH
Confidence 999999999999987777766665 5556666667778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCcCC-CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCC
Q 039800 288 IIVTVLYCLMAASMSMLMPYDMID-AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVV 366 (576)
Q Consensus 288 ~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~l 366 (576)
.++.++|++..+......|.+++. ++.|+.++.+ ..++++...++.+..+++.+++.++.+.+.||+++++||||.+
T Consensus 237 ~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~l 314 (429)
T TIGR00909 237 IVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGY--DLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLL 314 (429)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHH--HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999988888887764 4568887877 5566888999999999999999999999999999999999999
Q ss_pred chhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHH
Q 039800 367 PAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFS 446 (576)
Q Consensus 367 P~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 446 (576)
|++|+|+|||+++|++|++++++++.++....+++.+.++.+...++.|++.+++.+++|+|+|+.+||
T Consensus 315 P~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~----------- 383 (429)
T TIGR00909 315 PGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRA----------- 383 (429)
T ss_pred cHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-----------
Confidence 999999999999999999999999988877778999999999999999999999999999887664444
Q ss_pred HHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHHHhcCChhHHHH
Q 039800 447 VTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVR 526 (576)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (576)
||.|..|+.+.+.+..+.++....++.++..
T Consensus 384 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (429)
T TIGR00909 384 -------------------------------------------------FRCPLVPVLPVLVVSYCIYLLLNLGPGTTVW 414 (429)
T ss_pred -------------------------------------------------CCCCcchHHHHHHHHHHHHHHHHccHHHHHH
Confidence 4445666777777777778777888888889
Q ss_pred HHHHHHHHHHHHHHh
Q 039800 527 FGFFSALAVLVYLLY 541 (576)
Q Consensus 527 ~~~~~~i~~~~y~~~ 541 (576)
..+|+++|.++|..|
T Consensus 415 ~~~~~~~g~~~y~~~ 429 (429)
T TIGR00909 415 FLVWMLLGSVFYFIY 429 (429)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998654
|
|
| >COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=414.82 Aligned_cols=420 Identities=23% Similarity=0.387 Sum_probs=370.6
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 127 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 127 (576)
+++++||.++.+|...+++|+.||+|.|...+..++. +||+.++++++++++.+.+.-.++|+..+-|++|+..+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~-AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAM-AGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhh-hCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 4567999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 128 TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 128 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
.+||..||++||.||+.++....++..+.+.|++.+++.. +.| +.+++++.+...+|+.++|.+
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-P~W---------------v~al~~~~l~~~~NL~sVk~F 149 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-PQW---------------VFALAAVVLLLAVNLISVKVF 149 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cHH---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765 444 788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-------CC-----CCC---CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWK-------DP-----KNP---SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~-------~~-----~~~---~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
+..|..+..+|++.++.+++.++.. +. +|. .+|.|+|+.|++.++..++|+|.|.|.+...++|+
T Consensus 150 GE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et 229 (462)
T COG1113 150 GELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA 229 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 9999999999999999998887664 11 111 36789999999999999999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
|||+|.+|||+........++|+...+++....|++++++ ++|+.+.++ ..|.++...++++.++.+.++++|+.++
T Consensus 230 ~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~--~iGi~~Aa~i~N~VVLtAa~S~~NSgly 307 (462)
T COG1113 230 KDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFS--LIGIPFAAGIMNFVVLTAALSALNSGLY 307 (462)
T ss_pred cChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHH--HcCCcccccceeEEEeechhhccccccc
Confidence 9999999999999999999999999999999999999865 579999999 9999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 352 GQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYR 425 (576)
Q Consensus 352 ~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 425 (576)
+.||++|++|+||..||.++|+| |+|+|+++++++.+...+...+ ..|+.+.+..+...+..|+++.++.+++
T Consensus 308 stsRmL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~ 386 (462)
T COG1113 308 STSRMLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKL 386 (462)
T ss_pred ccchHHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 8999999999998776554444 4689999999999999999999999999
Q ss_pred hhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHH
Q 039800 426 RYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIP 505 (576)
Q Consensus 426 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (576)
|+++++ ..++.+||.|..|+..
T Consensus 387 rk~~~~----------------------------------------------------------~~~~~~fkm~~~p~~~ 408 (462)
T COG1113 387 RKAKPA----------------------------------------------------------EGKKLKFKMPLYPFTN 408 (462)
T ss_pred Hhcchh----------------------------------------------------------cccCcccccccccHHH
Confidence 985443 2445667777788888
Q ss_pred HHHHHHHHHHHhcC--C---hhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 506 CISIFLNIFLLGSL--D---GPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 506 ~~~~~~~~~~~~~~--~---~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
++++++..+++..| + ........+|+++-.+.|+.+++|+
T Consensus 409 ~l~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~~ 453 (462)
T COG1113 409 YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKK 453 (462)
T ss_pred HHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 77777776666654 1 1234455566666666665555444
|
|
| >PRK10580 proY putative proline-specific permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=434.33 Aligned_cols=364 Identities=20% Similarity=0.360 Sum_probs=310.3
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 127 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 127 (576)
+++++||+++.++++.+++|.++|+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~-aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~ 81 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKM-AGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQE 81 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4567999999999999999999999999999998876 899899999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 128 TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 128 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
.+||.+||++||.+++.+....+.+...++.|...+++.. +. ....++++++...+|++|+|..
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~l~~~ln~~gv~~~ 145 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV-PH---------------WIWVLSVVLIICAVNLMSVKVF 145 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-Ch---------------HHHHHHHHHHHHHHHHccchhH
Confidence 9999999999999999998888887777888887655321 11 1345566677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc------C---CCCC------CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWK------D---PKNP------SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~------~---~~~~------~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
+++|.+++.+++..++++++.++.. + ..+. .++.+.++.+++.++..++|+|.|+|.+++++||+
T Consensus 146 ~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~ 225 (457)
T PRK10580 146 GELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA 225 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 9999999999999887665544210 1 1111 12345667788999999999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
|||+||+|||+..+++.+.++|++..+......|++++.. +.|+..+++ ..|.++...++.+..+.+.+++.+++++
T Consensus 226 knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (457)
T PRK10580 226 KDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQ--HMGITFAASILNFVVLTASLSAINSDVF 303 (457)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHH--HcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888888888753 568888876 7787888888888888999999999999
Q ss_pred hHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 352 GQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYR 425 (576)
Q Consensus 352 ~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 425 (576)
+.||++++|||||.+|++|+|+| |+|+|++|++++.++..+...+ ..++.+.++.+...++.|.+++++.+++
T Consensus 304 ~~sR~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~l 382 (457)
T PRK10580 304 GVGRMLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAF 382 (457)
T ss_pred HHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 6899999999997655443222 3477899999999999999999999999
Q ss_pred hhccCC
Q 039800 426 RYVNLG 431 (576)
Q Consensus 426 r~~~~~ 431 (576)
|+++++
T Consensus 383 r~~~~~ 388 (457)
T PRK10580 383 RRRLPP 388 (457)
T ss_pred HHHHHh
Confidence 887543
|
|
| >PRK10836 lysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=438.45 Aligned_cols=399 Identities=20% Similarity=0.253 Sum_probs=327.4
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~ 126 (576)
+++++||+++.++.+++++|.+||+|+|..++..+.. +||. .+++|+++++++++.+++|+|+++++|++||.|.|++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~-aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~ 87 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQ-AGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQ 87 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 4567999999999999999999999999999999887 8886 8999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchh
Q 039800 127 VTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRD 206 (576)
Q Consensus 127 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 206 (576)
+.+|+.+||.+||.+++.+....+........++..+++. .+. .....+++.+++.+|++|+|.
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~lN~~gv~~ 151 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD-TPG---------------WIWSALFLGVIFLLNYISVRG 151 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-Cch---------------HHHHHHHHHHHHHHHHHcchh
Confidence 9999999999999999988777665544444444443321 111 134556667788999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc------C-----CCCCC---CCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 207 SSVVNMILTVLHILFIAFVILMGFWK------D-----PKNPS---GFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~~~i~~~~~------~-----~~~~~---~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
.+++|.+++..|+..++.+++.++.. + ++++. +..+.++.+++.+....+|+|.|+|.+++++||+
T Consensus 152 ~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 231 (489)
T PRK10836 152 FGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES 231 (489)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh
Confidence 99999999999998876666544322 1 11221 1113456666666666789999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC---------CCchHHHhhccCCCChhHHHHHHHHHHHHHHH
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMID---------AEAPFSGAFSGKSDGWKWVSNVIGVGASFGIL 343 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 343 (576)
|||+||+|||+..++..+.++|++..++.....|.++.+ ..+|+..+++ ..|.++...++.+.++++.+
T Consensus 232 knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~--~~g~~~~~~ii~~~il~a~~ 309 (489)
T PRK10836 232 EDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQ--HAGLLSAAAVMNAVILTAVL 309 (489)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHH--HcCChhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888865431 2468888888 66767788899999999999
Q ss_pred HHHHHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHH
Q 039800 344 TSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYM 417 (576)
Q Consensus 344 ~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~ 417 (576)
++.|+.+++.||++|+|||||.+|++|+|+| |+|+|++|++++.+++.+..+. ..++.+.++.+...++.|++
T Consensus 310 ~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~ 388 (489)
T PRK10836 310 SAGNSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLG 388 (489)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 6899999999999988766554 23567888899999999999
Q ss_pred HHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 039800 418 VANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWG 497 (576)
Q Consensus 418 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (576)
.+++.+++||+.+++.+ ..++++||
T Consensus 389 ~~~a~l~~R~~~~~~~~-------------------------------------------------------~~~~~p~~ 413 (489)
T PRK10836 389 IAISHYRFRRGYVLQGH-------------------------------------------------------DLNDLPYR 413 (489)
T ss_pred HHHHHHHHHHHHHhcCC-------------------------------------------------------CcCCCCCc
Confidence 99999998886432211 01236788
Q ss_pred cccccHHHHHHHHHHHHHHhcCCh
Q 039800 498 VPLMPWIPCISIFLNIFLLGSLDG 521 (576)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~ 521 (576)
.|.+|+.|+++++.+++++....+
T Consensus 414 ~p~~p~~~~~~~~~~~~~~~~~~~ 437 (489)
T PRK10836 414 SGFFPLGPIFAFVLCLIITLGQNY 437 (489)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998886544
|
|
| >TIGR01773 GABAperm gamma-aminobutyrate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=434.28 Aligned_cols=368 Identities=21% Similarity=0.320 Sum_probs=316.9
Q ss_pred CCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 49 GSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 49 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
+.++||+++.+++.+++++.++|+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|++||.|.|+++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIAS-AGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 455899999999999999999999999999999887 8888888999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
+||.+||++||.++++++...+.+....++++..+++.. + ...++++++++.+.+|++|+|..+
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---------------~~~~~~~~~~~~~~~n~~gv~~~~ 149 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDI-P---------------LWLFSLILTIVLTLTNLYSVKSYG 149 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-c---------------HHHHHHHHHHHHHHHHHHhcchhh
Confidence 999999999999999999999999888888888765421 1 225677778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--------CC---CCC---CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcC
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK--------DP---KNP---SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKN 274 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~--------~~---~~~---~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~ 274 (576)
++|.+.+.+|++.++.+++.++.. +. .++ .++.|+++.++..++..+.|+|.|+|.+++++||+||
T Consensus 150 ~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~ 229 (452)
T TIGR01773 150 EFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSN 229 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcC
Confidence 999999999999887666655421 11 111 1234567778999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC--CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039800 275 PVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMID--AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLG 352 (576)
Q Consensus 275 p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (576)
|+||+|||+..+.....++|++..+......|+++.+ +++|+.++.+ ..|.++...++.+.++++.+++.++.+++
T Consensus 230 P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~--~~g~~~~~~ii~~~~~~~~~~~~~~~~~~ 307 (452)
T TIGR01773 230 PIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLE--LLGIPHAKLIMDFVVLTAVLSCLNSALYT 307 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHH--HcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877777766543 3348888877 77878888899999999999999999999
Q ss_pred HHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 353 QARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYRR 426 (576)
Q Consensus 353 ~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r 426 (576)
.||++++|||||.+|++|+|+| |+++|++|++++.+++++..+. ..++.+.++.+...++.|++++++.+++|
T Consensus 308 ~sR~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r 386 (452)
T TIGR01773 308 TSRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMR 386 (452)
T ss_pred HHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 7899999999998888765544 23567888888888999999999999999
Q ss_pred hccCCCCCCC
Q 039800 427 YVNLGTTNPQ 436 (576)
Q Consensus 427 ~~~~~~~~~~ 436 (576)
++.|+++||+
T Consensus 387 ~~~~~~~~~~ 396 (452)
T TIGR01773 387 KKLKANGEAI 396 (452)
T ss_pred HHHHhcCCCC
Confidence 8877655553
|
GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity. |
| >PRK10238 aromatic amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=434.50 Aligned_cols=364 Identities=24% Similarity=0.397 Sum_probs=316.9
Q ss_pred CCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 49 GSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 49 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
++++||+++.++..+++++.++|+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|.+||.|+|+++.
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~ 85 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQS-AGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKY 85 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 346899999999999999999999999999999887 8889899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
+||..||++||.+++++....+.+....+++++.+++. .+.| ....++.++++.+|++|+|..+
T Consensus 86 ~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~---------------~~~~i~~~~~~~lN~~gv~~~~ 149 (456)
T PRK10238 86 WGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-IPTW---------------VSAAVFFVVINAINLTNVKVFG 149 (456)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CcHH---------------HHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999998888888776542 2222 4566667788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---C-------CCCC---CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCc
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK---D-------PKNP---SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNP 275 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~---~-------~~~~---~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p 275 (576)
++|.+.+.+|++.++++++.++.. + ..+. .++.|+++.++..++..+.|+|.|+|.+++++||+|||
T Consensus 150 ~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP 229 (456)
T PRK10238 150 EMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNP 229 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCh
Confidence 999999999998876655543221 1 1111 22345667788888888999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039800 276 VKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQA 354 (576)
Q Consensus 276 ~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 354 (576)
+|++|||+..++....+.|+..........|++++.. ++|+.++++ ..|.++...++.+..+.+.+++.++.+++.|
T Consensus 230 ~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~--~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~s 307 (456)
T PRK10238 230 EQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFH--ELGDTFVANALNIVVLTAALSVYNSCVYCNS 307 (456)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHH--HcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777888887753 579999888 7777888889999999999999999999999
Q ss_pred HHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039800 355 RYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYRRYV 428 (576)
Q Consensus 355 R~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 428 (576)
|++|+|||||.+|++|+|+| |+++|++|++++.+++.+..++ ..++.+.++.+.+.+++|.+++++.+++||+
T Consensus 308 R~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 308 RMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRA 386 (456)
T ss_pred HHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 6799999999999988766553 4588899999999999999999999999987
Q ss_pred cCCC
Q 039800 429 NLGT 432 (576)
Q Consensus 429 ~~~~ 432 (576)
++++
T Consensus 387 ~~~~ 390 (456)
T PRK10238 387 KQEQ 390 (456)
T ss_pred HHhc
Confidence 6653
|
|
| >KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=421.90 Aligned_cols=462 Identities=18% Similarity=0.287 Sum_probs=368.6
Q ss_pred cCCchHHhhhhhccCCCCCccccChHHHHHHHhhhhh-hhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 039800 34 VSTSYEEMSRVRAKSGSDMRKTLRWYDLVCFGIGGMV-GAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFA 112 (576)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~~~~~~~i-g~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~ 112 (576)
+++|++++.+++ +|||+||++++++.+.++++.+- -.|+-.+....+...|+|.+.|+|++++++.++++++++|++
T Consensus 30 ~~~d~~~L~~lg--Ykqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~ 107 (550)
T KOG1289|consen 30 DDSDEELLAELG--YKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELC 107 (550)
T ss_pred ccCCHHHHHHcC--CchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344455566666 99999999999999999999772 244444444455443445689999999999999999999999
Q ss_pred hcCcCCCchhHHHHH----HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHH
Q 039800 113 VDMPVAGGAFSYLRV----TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVL 188 (576)
Q Consensus 113 ~~~p~~Gg~y~~~~~----~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (576)
+++|++||.|.|+.. .+||..+|++||...+++....++..++.++.+.......++.+ .++++ +..++
T Consensus 108 Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y------~~~~~-~~~~v 180 (550)
T KOG1289|consen 108 SAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNY------EPTNY-HQFGV 180 (550)
T ss_pred hhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCC------cccce-EeehH
Confidence 999999999999975 56778899999999999999999999999999987765443332 12222 23478
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-CC--------------CCCCCCCCCchhHHHHHHH
Q 039800 189 AVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK-DP--------------KNPSGFFPYGAKGVFNGAA 253 (576)
Q Consensus 189 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~--------------~~~~~~~~~g~~~~~~~~~ 253 (576)
..++..+..++|+.+.|...+++.+.....++.+++..+..... +. +|.+++.+.|| .+..++.
T Consensus 181 ~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~-afil~f~ 259 (550)
T KOG1289|consen 181 FEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGW-AFILGFF 259 (550)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchH-HHHHhhc
Confidence 88889999999999999999999999999999988877776665 11 11123333444 4788888
Q ss_pred HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCc--C-CC--CchHHHhhccCCCChh
Q 039800 254 MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDM--I-DA--EAPFSGAFSGKSDGWK 328 (576)
Q Consensus 254 ~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~--~-~~--~~p~~~~~~~~~~g~~ 328 (576)
...|.+.|+|+++|++||+|||+|+.||||+.++.+..++.....+.+....++|. + ++ ..|+.+.+.+ ..|.+
T Consensus 260 ~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~-~lg~k 338 (550)
T KOG1289|consen 260 NPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQ-ALGKK 338 (550)
T ss_pred cceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHH-hcCCC
Confidence 89999999999999999999999999999999999999999999999888777532 2 32 4799999987 88866
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHHh-----hcHH
Q 039800 329 WVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVP--AWFARVHPKTSTPVNASAFLGIFTAAIALF-----TDLT 401 (576)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~ 401 (576)
+. ..+....+++.+.+..+.+.+.||+.|+.||||.+| ++++|+||++++|.+|+++..+++.++.++ .+++
T Consensus 339 ~~-v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~ 417 (550)
T KOG1289|consen 339 GA-VFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFN 417 (550)
T ss_pred ce-EehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 55 667777777778888899999999999999999999 999999988899999999999999887776 5799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHH
Q 039800 402 VLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQ 481 (576)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (576)
++.+++.++...+|..+.++.+..+|+ .-++.| |++ ||.+. ++++.+++|.+++.
T Consensus 418 Alfs~a~i~l~~Ay~iP~~~rlf~~r~-~f~~gp--------------------~~l---Gk~s~-p~~~i~v~w~lf~~ 472 (550)
T KOG1289|consen 418 ALFSAAAIALFIAYAIPIFCRLFFGRD-DFRPGP--------------------FNL---GKFSK-PIGIIAVLWVLFMI 472 (550)
T ss_pred HHHHHHHHHHHHHHHHhHHhheeeccc-ccCCCC--------------------ccc---ccccc-chHHHHHHHHHHHH
Confidence 999999999999999999888776655 222223 444 44444 67778899999999
Q ss_pred HHHHhccCCCCCCccccccccHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcccccccccCcCC
Q 039800 482 IFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHASFDAEEDGSFG 556 (576)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~ 556 (576)
+++++|+..+...+ +||| +.+++++..+.++++|+.++||. .++++....+
T Consensus 473 vil~fP~~~pvT~~----------------------~MNy-a~VV~gg~~lf~li~~~~~~~k~-f~gP~~~~~~ 523 (550)
T KOG1289|consen 473 VILCFPSVYPVTAD----------------------NMNY-ACVVYGGVMLFCLIYYFVSARKW-FKGPIPSVLE 523 (550)
T ss_pred HHHhCCcccCCCcc----------------------cCce-EEEeehhhhhhhhheeeeeccee-ecCCcccccc
Confidence 99999998555443 4455 44777888889999998886665 6666554433
|
|
| >PRK11049 D-alanine/D-serine/glycine permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=430.84 Aligned_cols=365 Identities=21% Similarity=0.344 Sum_probs=314.5
Q ss_pred CCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 49 GSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 49 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
.+++||+++.++...+++|.+||+|+|..++..+.. +||..+++|++++++.++.+.+++|+++..|..|+.|.|+++.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~-aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISL-AGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 345999999999999999999999999999999887 8888889999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
+||..||++||.+++++....+.++...+.|+..+++.. +. ..++.+++.+++++|++|+|..+
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~-~~---------------~~~~~~~~~~~~~iN~~g~~~~~ 157 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL-SD---------------WVASLAVVLLLLSLNLATVKMFG 157 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cH---------------HHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999998777777777888887665421 11 14556677788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---C---C----CCC------CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK---D---P----KNP------SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~---~---~----~~~------~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
++|++.+.+|++.++.+++.++.. . + .++ .++.|+|+.+++.++..++|+|.|+|.+++++||+
T Consensus 158 ~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~ 237 (469)
T PRK11049 158 EMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET 237 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Confidence 999999999999988887776642 1 1 111 12345677789999999999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
|||+||+||++..+.+.+.++|++...+.....|++++.. ++|+.++++ ..|.++...++.+..+++.+++.++.+.
T Consensus 238 knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~--~~g~~~~~~~~~~~~~~s~~~~~~~~~~ 315 (469)
T PRK11049 238 KDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFV--LVGLPAAASVINFVVLTSAASSANSGVF 315 (469)
T ss_pred cCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHH--HcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888899999999999888888888744 578988888 6677888889999999999999999999
Q ss_pred hHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHH---HHh-----hcHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 352 GQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAI---ALF-----TDLTVLLNLVSIGTLFVFYMVANAVI 423 (576)
Q Consensus 352 ~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~---~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~ 423 (576)
+.||++++|||||.+|++|+|+| |+|+|++|++++.++..+. ... ..++.+.++.+....+.|++.+.+++
T Consensus 316 ~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~ 394 (469)
T PRK11049 316 STSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYL 394 (469)
T ss_pred HHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 5699999999987765431 112 24777888888889999999999999
Q ss_pred HHhhccCCCC
Q 039800 424 YRRYVNLGTT 433 (576)
Q Consensus 424 ~~r~~~~~~~ 433 (576)
++|+++|+.+
T Consensus 395 ~lr~~~p~~~ 404 (469)
T PRK11049 395 VYRKQRPHLH 404 (469)
T ss_pred HHHHhhhhcC
Confidence 9999887754
|
|
| >PRK10435 cadB lysine/cadaverine antiporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=425.37 Aligned_cols=357 Identities=18% Similarity=0.255 Sum_probs=302.0
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
.+|+++.++++.+.+|.++|+|+|..++... . +|+..+++|+++++.+++.+++++|+++++|++||.|+|++| +||
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~-~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLA-S-IGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 4688999999999999999999999998864 4 688899999999999999999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (576)
.+||.+||.+|................|+..+++...+.+ ...+++++++++++++|.+|+|..++++
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~------------~~~~~~~~i~~~~~~ln~~gvk~~~~i~ 147 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPI------------PAGIACIAIVWVFTFVNMLGGTWVSRLT 147 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChH------------HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999987766666666777788877664321111 1124566677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-CCC----CCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHH
Q 039800 212 MILTVLHILFIAFVILMGFWK-DPK----NPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGS 286 (576)
Q Consensus 212 ~~~~~~~l~~~~~~~i~~~~~-~~~----~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~ 286 (576)
.+.+.++++.++.+.+.+..+ +++ ++.+..+.++.++..++..++|+|.|+|.+++++||+|||+||+|||+..+
T Consensus 148 ~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~ 227 (435)
T PRK10435 148 TIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLG 227 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHH
Confidence 999988887776655555443 322 222223355778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcCC-CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCC
Q 039800 287 VIIVTVLYCLMAASMSMLMPYDMID-AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSV 365 (576)
Q Consensus 287 ~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 365 (576)
..++.++|++..++.....|+++++ +++|+.++++ ..++++...++.+..+++++++.+++++..+|..+++||||.
T Consensus 228 ~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~--~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~ 305 (435)
T PRK10435 228 TGLAGIIYIAATQVISGMFPASVMAASGAPFAISAS--TILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGN 305 (435)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHH--HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999988884 5679998887 555588888999889999999999999999999999999999
Q ss_pred CchhhhhhcCCCCCchhHHHHHHHHHHHHHH----h--------hcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 366 VPAWFARVHPKTSTPVNASAFLGIFTAAIAL----F--------TDLTVLLNLVSIGTLFVFYMVANAVIYRR 426 (576)
Q Consensus 366 lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~----~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r 426 (576)
+||+|+|+| |+|+|++|++++.++..++.. + ..++.+.++.+...+..|++++++.+++|
T Consensus 306 lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~ 377 (435)
T PRK10435 306 FPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFE 377 (435)
T ss_pred ccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999 799999999998876644331 1 25788999999999999999999988543
|
|
| >TIGR03428 ureacarb_perm permease, urea carboxylase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=424.48 Aligned_cols=414 Identities=19% Similarity=0.244 Sum_probs=323.2
Q ss_pred CCCCCccccChHHHHHHHhhhh-hhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGM-VGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~ 126 (576)
++|||||+++.++.+.++++.+ ++.|++..++..+.. +||..+++|+++++..++.+++++|+++++|++||.|+|++
T Consensus 7 ~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~-~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~ 85 (475)
T TIGR03428 7 YQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGF-GGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSR 85 (475)
T ss_pred CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 8899999999999999999986 789999999999886 89999999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CCcccccccCCCCCCCchhhHHHHHHHHHHHHHHH
Q 039800 127 VTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGV-----PTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVIC 201 (576)
Q Consensus 127 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (576)
+.+||.+||++||.+++++....+........++..+.+. ..+.+. .+....+..+++.+++++.+++|+
T Consensus 86 ~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~in~ 160 (475)
T TIGR03428 86 RMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLT-----SPSGAANAVLLGSVLLVLTTVINC 160 (475)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccc-----CCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887777666665555443210 001110 011111233677777888999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCC---CCC----CCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhc
Q 039800 202 YSTRDSSVVNMILTVLHILFIAFVILMGFWK-DPKN---PSG----FFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVK 273 (576)
Q Consensus 202 ~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~---~~~----~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k 273 (576)
+|+|..+++|++.+.++++.++++++.++.+ +.+. +.. ..+....++..+....+|+|.|+|.+++++||+|
T Consensus 161 ~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~k 240 (475)
T TIGR03428 161 IGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETK 240 (475)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhc
Confidence 9999999999999999988877766665544 2110 111 1111134566778888999999999999999999
Q ss_pred CcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCC-c-CCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 274 NPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYD-M-IDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 274 ~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~-~-~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
||+||+||++..++.++.++|.+..+......+.. + ..++.+.+.++.+ ..|.++.. .+....+++.+++.++.+.
T Consensus 241 nP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~~~~~-~~~~~~~i~~~~~~~~~~~ 318 (475)
T TIGR03428 241 NPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSA-VLDSPWGT-VLLVDVAIAILVCTLAIQT 318 (475)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHH-HhCcHhHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888777766655431 1 1122223344443 56655554 4445567788889999999
Q ss_pred hHHHHHHHHhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 352 GQARYMCVIGRSSVVP--AWFARVHPKTSTPVNASAFLGIFTAAIALF-----TDLTVLLNLVSIGTLFVFYMVANAVIY 424 (576)
Q Consensus 352 ~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~ 424 (576)
+.||++|++||||.+| ++|+|+|||+++|++|+++..+++.++.++ ..|+.+.++.+.....+|+++.++.+.
T Consensus 319 ~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~ 398 (475)
T TIGR03428 319 AGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLL 398 (475)
T ss_pred HHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 589999999999999999999988776665 357889999999999999999888887
Q ss_pred Hhhcc--C--C--CCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 039800 425 RRYVN--L--G--TTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKP 493 (576)
Q Consensus 425 ~r~~~--~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (576)
+|+|. | + +++| |++ |++|. ++|+++++|.++..++.++|+..+.+
T Consensus 399 ~~~~~~~~~~~~~~~g~--------------------f~l---g~~g~-~vn~~a~~~~~~~~v~~~~P~~~~~~ 449 (475)
T TIGR03428 399 RRLRGWPRGDQTDPAGL--------------------FSL---GRWGL-PVNILAVVYGALMVVNLSWPRPEVYD 449 (475)
T ss_pred HHHhccCCccCCCCCCC--------------------CCC---chhHH-HHHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 66543 1 1 2233 444 45666 99999999999999999999864433
|
A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon. |
| >KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-51 Score=411.30 Aligned_cols=378 Identities=21% Similarity=0.382 Sum_probs=331.6
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccch-H-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-A-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYL 125 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~ 125 (576)
++.+++|+++.+..+.+.+++++|+|+|..+..+... +|+ + ++..|+.++++++.-+++|+||++.+|++||+|.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~-~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLAN-TGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH
Confidence 4556889999999999999999999999999999887 665 3 777899999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhc
Q 039800 126 RVTFGEFAAFLTGSNL-ILEYVMSNAAVARGFASY-FGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYS 203 (576)
Q Consensus 126 ~~~~g~~~g~~~g~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 203 (576)
.++||+.+||...|.- .+.+....+..+..+++| +...++. .. .+......++.+++.+++++|+.+
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~--c~---------~p~~~~~lla~~~l~~lt~~n~~~ 153 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL--CD---------VPRVASKLLAAALLVLLTLINSFS 153 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC--CC---------CchHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999954 455566669999999999 5555541 11 111123478889999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCCC--CC--CCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCc
Q 039800 204 TRDSSVVNMILTVLHILFIAFVILMGFWK----DPKNPSG--FF--PYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNP 275 (576)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~----~~~~~~~--~~--~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p 275 (576)
+|+..++|.+++..|++.+.++++.++.. +.+|++. +. ..+...+..++...+|+|.|||.....+||+|||
T Consensus 154 V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP 233 (479)
T KOG1287|consen 154 VKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNP 233 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCc
Confidence 99999999999999999999999999886 3343321 22 2234557788889999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039800 276 VKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQAR 355 (576)
Q Consensus 276 ~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 355 (576)
+||+|||+..++.+++++|++.+++.....++|++.+++.+..-+.+ ..++.+. +.+.+.+.++.++++|+.+.+.||
T Consensus 234 ~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~-~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR 311 (479)
T KOG1287|consen 234 RRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFAD-RILGVFA-WAIPFSVALSLIGSLNSVIFSSSR 311 (479)
T ss_pred cccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHH-HhccchH-HHHHHHHHHHhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999998766666666665 5554555 999999999999999999999999
Q ss_pred HHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 039800 356 YMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNP 435 (576)
Q Consensus 356 ~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 435 (576)
+++++||+|++|+.|+++|+++.+|..++++++..+++..+.++++.++|..++...+.+.+.+++++++|+|+|+++||
T Consensus 312 ~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 312 LFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred HHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred Cchh
Q 039800 436 QPTL 439 (576)
Q Consensus 436 ~~~~ 439 (576)
+|+.
T Consensus 392 iKvp 395 (479)
T KOG1287|consen 392 IKVP 395 (479)
T ss_pred Eeee
Confidence 8843
|
|
| >TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=422.64 Aligned_cols=417 Identities=21% Similarity=0.274 Sum_probs=339.6
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcC-CCchhHHHHHHh
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPV-AGGAFSYLRVTF 129 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~ 129 (576)
++|+++.++.+.++++.++|+|+|..++..... +|+. .+++|++++++.++.+++|+|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~-~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASV-AGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 478899999999999999999999999887765 7875 7889999999999999999999999999 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 130 GEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 130 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
||..||++||.+++.+............+++..+++..... +.....+.+++++++.+.+|++|+|..+|
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~----------~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~ 153 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG----------NPVPSILGASVLLWVFTFLVLRGVRQAAF 153 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC----------CcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 99999999999999988887777777777877766521100 00112256667777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CCCCC----CC----CCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchh
Q 039800 210 VNMILTVLHILFIAFVILMGFWK-DPKNP----SG----FFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIP 280 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~~i~~~~~-~~~~~----~~----~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p 280 (576)
+|.+.+..+++.++++++.++.. +.+++ .+ ..++++.++..++...+|+|.|+|.+++++||+|| +||+|
T Consensus 154 i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iP 232 (473)
T TIGR00905 154 INTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVG 232 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccch
Confidence 99999999999888877777653 22222 11 11224567888899999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCcCC-CCch-HHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039800 281 IGVSGSVIIVTVLYCLMAASMSMLMPYDMID-AEAP-FSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMC 358 (576)
Q Consensus 281 ~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 358 (576)
|++..++.+++++|++...+.....|.+++. .+.| ..++.+ ...+++...++.+.++++.+++.++.+.+.||++|
T Consensus 233 rai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~--~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~ 310 (473)
T TIGR00905 233 KATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLE--MIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPF 310 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHH--HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888888764 4567 666666 33447788889999999999999999999999999
Q ss_pred HHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 039800 359 VIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF-----TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTT 433 (576)
Q Consensus 359 a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 433 (576)
+|||||.+|++|+|+|| +++|++|++++.+++.++.+. .+++.+.++.+...++.|++.+++.+++|+|++..+
T Consensus 311 amardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~ 389 (473)
T TIGR00905 311 SAAKDGLFPKIFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPK 389 (473)
T ss_pred HHHhCCChhHHHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 99999999999999995 599999999999887654442 468899999999999999999999999887752100
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHH
Q 039800 434 NPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNI 513 (576)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (576)
+ +.|..++.+.++.+.+.
T Consensus 390 ~--------------------------------------------------------------~~~~~~~~~~l~~~~~~ 407 (473)
T TIGR00905 390 I--------------------------------------------------------------KNRKALIVGVIACVYSI 407 (473)
T ss_pred c--------------------------------------------------------------ccchHHHHHHHHHHHHH
Confidence 0 01234556777777777
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 514 FLLGSLDGPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
++....+........+++++|+..|++++|++
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 408 WLLYAAGLKYLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77666666666667778888988887655543
|
This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. |
| >TIGR00911 2A0308 L-type amino acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=427.83 Aligned_cols=376 Identities=24% Similarity=0.394 Sum_probs=310.4
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccch-H-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-A-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYL 125 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~ 125 (576)
++++++|+++.++.++++++.++|+|+|..++..+.. +|+ + .+++|++++++.++.+++++|+++++|++||.|+|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~-~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKN-AGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 5678999999999999999999999999999988776 665 3 467899999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hhCC-CCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHh
Q 039800 126 RVTFGEFAAFLTGSNLIL-EYVMSNAAVARGFASYFGT-AIGV-PTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICY 202 (576)
Q Consensus 126 ~~~~g~~~g~~~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (576)
++.+||..||+.+|..+. .+....+..+..+++|+.. .++. ..+.|. ..+++++++++.+++|++
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~------------~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWA------------IRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHH------------HHHHHHHHHHHHHHHHHh
Confidence 999999999999998765 3345556666666777543 2321 111221 226777788889999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcc-C---CC--CCC-CCC--CCchhHHHHHHHHHHHHHhhhhhHhhhhhhhc
Q 039800 203 STRDSSVVNMILTVLHILFIAFVILMGFWK-D---PK--NPS-GFF--PYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVK 273 (576)
Q Consensus 203 g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~---~~--~~~-~~~--~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k 273 (576)
|+|..+++|.+++.++++.++++++.++.. . .. ++. .+. +.+..++..++..++|+|.|+|.+++++||+|
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~k 262 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVK 262 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhc
Confidence 999999999999999999888777766543 1 11 111 111 13456788899999999999999999999999
Q ss_pred CcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 039800 274 NPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQ 353 (576)
Q Consensus 274 ~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (576)
||+|++||++..++++++++|++..++.....|.+++..+.+....+.+...| ....++.+...++.+++.++.+.+.
T Consensus 263 nP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g--~~~~~i~~~~~is~~~~~~~~~~~~ 340 (501)
T TIGR00911 263 NPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG--VMSWAMPALVGLSCFGSVNGSLFSS 340 (501)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888775544333333210333 4566778888889999999999999
Q ss_pred HHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 039800 354 ARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTT 433 (576)
Q Consensus 354 sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 433 (576)
||++++|||||.+|++|+|+|||+++|+++++++++++++....++...+.++.+....+.|++..++++++|+|+|+.+
T Consensus 341 sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~ 420 (501)
T TIGR00911 341 SRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMN 420 (501)
T ss_pred HHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCC
Confidence 99999999999999999999999999999999999888777667777778888888889999999999999999999988
Q ss_pred CCCch
Q 039800 434 NPQPT 438 (576)
Q Consensus 434 ~~~~~ 438 (576)
||+|.
T Consensus 421 rp~r~ 425 (501)
T TIGR00911 421 RPIKV 425 (501)
T ss_pred CCccC
Confidence 88873
|
|
| >TIGR00907 2A0304 amino acid permease (GABA permease) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=426.26 Aligned_cols=443 Identities=17% Similarity=0.215 Sum_probs=342.5
Q ss_pred CCCCCccccChHHHHHHHhhhhh-hhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMV-GAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYL 125 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~i-g~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~ 125 (576)
+++++||+++.++.+.++++.+. ..|++...+..... +|| ..+++|++++++.++.+++++|+++++|++||.|+|+
T Consensus 6 ~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~ 84 (482)
T TIGR00907 6 YKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSS-GGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWS 84 (482)
T ss_pred CcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 78889999999999999999652 37888777766655 788 4899999999999999999999999999999999999
Q ss_pred HHHhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcc--cccccCCCCCCCchhhHHHHHHHHHHHHH
Q 039800 126 RVTFG----EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAK--WRLKVDGLPDGFNEIDVLAVAVVLVITFV 199 (576)
Q Consensus 126 ~~~~g----~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (576)
++.+| +..||++||.+++++....+......++++........+. +. ++.+ ....+.++++++++++
T Consensus 85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~i~~~~~~~~~~i 157 (482)
T TIGR00907 85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYI------PTRW-HIFGIMIGIHLIHALI 157 (482)
T ss_pred HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc------ccCc-hhhhhHHHHHHHHHHH
Confidence 99987 5679999999999999999988888888887654321111 10 1111 1125666777889999
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-CC----CC--CCC-------CCCCchhHHHHHHHHHHHHHhhhhhH
Q 039800 200 ICYSTRDSSVVNMILTVLHILFIAFVILMGFWK-DP----KN--PSG-------FFPYGAKGVFNGAAMVYLSYIGYDAV 265 (576)
Q Consensus 200 ~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~----~~--~~~-------~~~~g~~~~~~~~~~~~~~f~G~e~~ 265 (576)
|++|+|..++++++...++++.++++++..+.. +. .+ +.+ +.+.++ +++.++..+.|+|.|+|.+
T Consensus 158 n~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~~ 236 (482)
T TIGR00907 158 NSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDGT 236 (482)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcchh
Confidence 999999999999999988888876555444332 11 11 111 122233 4667777788999999999
Q ss_pred hhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcc-cCCcC-CC--CchHHHhhccCCCChhHHHHHHHHHHHHH
Q 039800 266 STMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLM-PYDMI-DA--EAPFSGAFSGKSDGWKWVSNVIGVGASFG 341 (576)
Q Consensus 266 ~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~-~~~~~-~~--~~p~~~~~~~~~~g~~~~~~~~~~~~~~~ 341 (576)
++++||+|||+||+|||+..++.+..+++++..+...... +.+++ ++ +.|+.+++.+ ..|.++...++.+..+++
T Consensus 237 ~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~g~~~~~~~~~~~~~~~ 315 (482)
T TIGR00907 237 AHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYN-ALGNKAGAIFLLCLILVT 315 (482)
T ss_pred hHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHH-HhCCchHHHHHHHHHHHH
Confidence 9999999999999999999999887776665555444333 22322 22 3588888874 677667777888888899
Q ss_pred HHHHHHHHHhhHHHHHHHHhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHH
Q 039800 342 ILTSLLVAMLGQARYMCVIGRSSVVP--AWFARVHPKTSTPVNASAFLGIFTAAIALF-----TDLTVLLNLVSIGTLFV 414 (576)
Q Consensus 342 ~~~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~ 414 (576)
.+++.++++.+.||++++|||||.+| ++|+|+|||+++|++|++++.+++.++.+. ..++.+.++.+...++.
T Consensus 316 ~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~ 395 (482)
T TIGR00907 316 SFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVS 395 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 999999988899999999999988776654 36889999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 039800 415 FYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPE 494 (576)
Q Consensus 415 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (576)
|.++.++.+++|++ ++++||++ .++++. .++..+++|..+..+..++|+..+.+.
T Consensus 396 y~~~~~~~l~~~~~-~~~~~~f~-----------------------lg~~~~-~~~~~~~~~~~~~~v~~~~P~~~p~~~ 450 (482)
T TIGR00907 396 YVIPIICKLAKGRN-TIAPGPFW-----------------------LGKYGF-FVNAVAVAWTVFSSVLFSFPPVLPVTP 450 (482)
T ss_pred HHHHHHHHHHhcCC-CCCCCCCc-----------------------CCcchH-HHHHHHHHHHHHHHhheeCCCCCCCCc
Confidence 99988877655444 56667765 233443 678889999999999999998633221
Q ss_pred ccccccccHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 039800 495 FWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHASFDA 549 (576)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~ 549 (576)
.++||. .+..++.++++.++|+.++||+ +++
T Consensus 451 ----------------------~~~ny~-~~~~~~~~~~~~~~~~~~~r~~-~~g 481 (482)
T TIGR00907 451 ----------------------ENMNYA-VVVFAGVLAISLVYWKYKGRKE-FTG 481 (482)
T ss_pred ----------------------ccCChH-hHHHHHHHHHHHHHheEeceee-ccC
Confidence 234553 3566788889999998887776 554
|
|
| >TIGR00913 2A0310 amino acid permease (yeast) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=422.79 Aligned_cols=358 Identities=22% Similarity=0.305 Sum_probs=300.7
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcC-CCchhHHHHHHhc
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPV-AGGAFSYLRVTFG 130 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~g 130 (576)
||+++.+++..+++|.++|+|+|..++..+.. +||. .+++|++++++.++.+++++|+++++|+ .||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~-~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALAT-GGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 58899999999999999999999999999887 8885 7899999999999999999999999995 5567789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 131 EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 131 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
|.+||++||.++++++...+.+....+.++..+.+. .+. .....++.++.+++|++|+|..+++
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~in~~gv~~~~~~ 143 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDK-VNP---------------AVWIAIFYVFIVIINLFGVKGYGEA 143 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCH---------------HHHHHHHHHHHHHHHHhcchHHHHH
Confidence 999999999999999999999998888888764331 111 1233455667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---CC--C---------CCCCCCCC----chhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 211 NMILTVLHILFIAFVILMGFWK---DP--K---------NPSGFFPY----GAKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 211 ~~~~~~~~l~~~~~~~i~~~~~---~~--~---------~~~~~~~~----g~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
|++.+.+|+..++.+++.++.. +. . +..++.+. ++.++..++..++|+|.|+|.+++++||+
T Consensus 144 ~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~ 223 (478)
T TIGR00913 144 EFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA 223 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh
Confidence 9999999988877666655432 11 0 11122222 25678889999999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCc--C-C-------CCchHHHhhccCCCChhHHHHHHHHHHHHHH
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDM--I-D-------AEAPFSGAFSGKSDGWKWVSNVIGVGASFGI 342 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~--~-~-------~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~ 342 (576)
|||+||+|||++.++..+.++|++..++.....|.++ + + .++|+..+++ ..|.++...++.++++++.
T Consensus 224 knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~--~~g~~~~~~~~~~~~~~s~ 301 (478)
T TIGR00913 224 ANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQ--NHGIKVLPHIFNAVILISV 301 (478)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHH--HcCCchHhHHHHHHHHHHH
Confidence 9999999999999999999999999888777778664 2 1 1267777666 7777888889999999999
Q ss_pred HHHHHHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHH
Q 039800 343 LTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFY 416 (576)
Q Consensus 343 ~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~ 416 (576)
+++.++.+++.||++|+|||||.+|++|+|+| |+++|++|++++.+++.+..+. ..++.+.++.+...++.|+
T Consensus 302 ~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~ 380 (478)
T TIGR00913 302 LSAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWM 380 (478)
T ss_pred HHHHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 7899999999999887654332 2478899999999999999
Q ss_pred HHHHHHHHHhhccC
Q 039800 417 MVANAVIYRRYVNL 430 (576)
Q Consensus 417 ~~~~~~~~~r~~~~ 430 (576)
+.+++.+++|++.+
T Consensus 381 ~~~~~~i~~r~~~~ 394 (478)
T TIGR00913 381 CICLSHIRFRKAMK 394 (478)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887644
|
|
| >KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=426.99 Aligned_cols=486 Identities=33% Similarity=0.540 Sum_probs=374.1
Q ss_pred CCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcC-CCchhHHHHH
Q 039800 49 GSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPV-AGGAFSYLRV 127 (576)
Q Consensus 49 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~-~Gg~y~~~~~ 127 (576)
++++||+|+.+|+.++++|.++|+|+|...+..+...+|++.+++++++++.+++.+++++|+++++|. +||.|.|+++
T Consensus 25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~ 104 (554)
T KOG1286|consen 25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYR 104 (554)
T ss_pred cchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeee
Confidence 468999999999999999999999999999999998666779999999999999999999999999999 5999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHH-hcchh
Q 039800 128 TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVIC-YSTRD 206 (576)
Q Consensus 128 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 206 (576)
.+|+.+||.+||.|++.|++..+.++.+.+.+++.+.+ .+.+....++.+........+++++++.++.+-. .++|.
T Consensus 105 ~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 105 FVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--cccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 99999999999999999999999999999999999861 1122111122222211222333333333333333 56667
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCC---------CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcC
Q 039800 207 SSVVNMILTVLHILFIAFVILMGFWK-DPKNP---------SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPV 276 (576)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~---------~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~ 276 (576)
...++++++.+.++.+.++++.|... |..++ .+|.|.++.|++.++..+.|+|.|+|.++..+||+|||+
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~ 262 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR 262 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc
Confidence 77777777777777777777777766 43333 357888899999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhcccCCc--CCCCc----hHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 039800 277 KDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDM--IDAEA----PFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAM 350 (576)
Q Consensus 277 r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~--~~~~~----p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 350 (576)
|++|+|+..++..+.++|++..+.+...+|+++ ++++. |+..+.+ ..+.+....++++++++++.+++|+.+
T Consensus 263 k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~--~~~~k~~~~ivna~iL~~~~s~~n~~~ 340 (554)
T KOG1286|consen 263 KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIG--NAGAKYLPHIVNAGILIGLLSSLNSSL 340 (554)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHh--ccCccccchhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988 76655 4444444 444455556999999999999999999
Q ss_pred hhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhc------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 351 LGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTD------LTVLLNLVSIGTLFVFYMVANAVIY 424 (576)
Q Consensus 351 ~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~ 424 (576)
++.+|.+++||+||.+||+|+++|+| |+|++|++++.+++.+..+..+ ++++.++.+++.++.|.++++++++
T Consensus 341 y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~ 419 (554)
T KOG1286|consen 341 YAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLR 419 (554)
T ss_pred HHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHee
Confidence 99999999999999999999999966 9999999999999988877643 5999999999999999999999999
Q ss_pred HhhccCCCCC-----CCc-----hhHHHHHHHHHHHHHHHhhccC-CC----CchhhHHHHHHHHHHHHHHHHHHHhccC
Q 039800 425 RRYVNLGTTN-----PQP-----TLSFLFLFSVTSIIFTLIWHFV-PP----CKSKAFMLGASAIVAIAVLQIFHCVVPQ 489 (576)
Q Consensus 425 ~r~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (576)
+|+..+.+.+ +++ +........+..+.....|... +. ..++.....+...+++++...+....+.
T Consensus 420 ~R~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~i~l~~~i~~~i~~~~ 499 (554)
T KOG1286|consen 420 FRYAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILLAQFYVAFFPIGSEFSAWGFFEAYLGLPILLIFYIGYKIYAKP 499 (554)
T ss_pred eeecccccCCCcccccccCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHHHHheeecc
Confidence 9987543321 222 3344444444444444444332 22 2233322222322233333322222221
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHhcCChhHHH--HHHHHHHHHHHHHHH-hhhccc
Q 039800 490 AKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYV--RFGFFSALAVLVYLL-YSVHAS 546 (576)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~y~~-~~~~~~ 546 (576)
... ..|+.|.+.+..+..++..++..++. ....|..+++..|.. |+.+|+
T Consensus 500 ~~~-------~vp~~~~idl~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~ 552 (554)
T KOG1286|consen 500 TNT-------LVPLSPCIDLDTNIYLMDSLDAETWIEERFEVWLEIGLLIYFFWYGIRHS 552 (554)
T ss_pred ccc-------ccCCccceEEEecceeeccccchhhhhhhHHHHhhhhhHHHHHhhhhhcc
Confidence 110 46677778888888888887777888 888888998888876 776664
|
|
| >PRK10197 gamma-aminobutyrate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=412.47 Aligned_cols=346 Identities=19% Similarity=0.294 Sum_probs=300.9
Q ss_pred HHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHHHHHH
Q 039800 64 FGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLIL 143 (576)
Q Consensus 64 ~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~ 143 (576)
+++|.+||+|+|..++..++. +||..+++|++++++.++.+++++|+++++|++||.|.|++|.+||.+||.+||.+|+
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~-aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAE-AGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 578999999999999999887 8888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Q 039800 144 EYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIA 223 (576)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~ 223 (576)
+++...+.+....+.+++.+.+. .+ ...++.+++++.+.+|++|+|..+++|.+.+.+|++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li 144 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWVPG-IP---------------IWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAIL 144 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc-Cc---------------HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHH
Confidence 99999988887777766654321 11 226778888889999999999999999999999999888
Q ss_pred HHHHHhhcc----CC----CCC------CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHH
Q 039800 224 FVILMGFWK----DP----KNP------SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVII 289 (576)
Q Consensus 224 ~~~i~~~~~----~~----~~~------~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~ 289 (576)
.+++.++.. ++ .++ .++.|+++.++..++..++|+|.|+|.+++.+||+|||+||+||++..++..
T Consensus 145 ~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~ 224 (446)
T PRK10197 145 AFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWR 224 (446)
T ss_pred HHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHH
Confidence 877766542 11 111 1344667889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCcCCC--CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCc
Q 039800 290 VTVLYCLMAASMSMLMPYDMIDA--EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVP 367 (576)
Q Consensus 290 ~~i~y~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP 367 (576)
+.++|++..++.....|+++.+. ..++..+++ ..|.++...++.+.++++.+++.|+++++.||++|++||||.+|
T Consensus 225 i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP 302 (446)
T PRK10197 225 ISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLE--LLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAP 302 (446)
T ss_pred HHHHHHHHHHHHheecCcCcccccccCcHHHHHH--HcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 99999999999888888876543 346667777 77878889999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039800 368 AWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVN 429 (576)
Q Consensus 368 ~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~ 429 (576)
++|+|+| |+|+|++|++++.+++.+..+. ..++.+.++.+...++.|.+++++.+++||+.
T Consensus 303 ~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~ 369 (446)
T PRK10197 303 AVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKIL 369 (446)
T ss_pred HHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 8899999999998777654433 25788999999999999999999999998863
|
|
| >PRK11021 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=404.90 Aligned_cols=354 Identities=18% Similarity=0.256 Sum_probs=291.4
Q ss_pred cChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHH
Q 039800 56 LRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAF 135 (576)
Q Consensus 56 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 135 (576)
+++++.+.+.+++++|+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|++||.|.|+++.+||.+||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~-aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALV-AGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 57899999999999999999999998887 88889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 039800 136 LTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILT 215 (576)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 215 (576)
.+||.++..+....+.......+++...++.+. +. ...++.++.++++++|++|+|..+|+|.+++
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~ 145 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFGWSS--WQ------------LLLAELLTLALLWLLNLRGASSSANLQTVIA 145 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC--ch------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999988777666655556677776654321 11 1245667777889999999999999999888
Q ss_pred HHHHHHHHHHHHHhhccCCCCC--CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHH
Q 039800 216 VLHILFIAFVILMGFWKDPKNP--SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVL 293 (576)
Q Consensus 216 ~~~l~~~~~~~i~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~ 293 (576)
.+.+..+..+...+- .+..++ .+..+.++.++..++...+|+|.|+|.+++++||+|||+||+|||+..+...+.++
T Consensus 146 ~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~l 224 (410)
T PRK11021 146 LLIVALVVAIWWAGD-IKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLV 224 (410)
T ss_pred HHHHHHHHHHHHHcC-CchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHH
Confidence 655443332221111 122222 22344578889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCcC-CCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhhhh
Q 039800 294 YCLMAASMSMLMPYDMI-DAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFAR 372 (576)
Q Consensus 294 y~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~ 372 (576)
|++.+++.....+.++. ..+.|..+++++ ..| ++...++.+..+.+.+++.++++.+.||++++|||||.+||+|+|
T Consensus 225 Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G-~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k 302 (410)
T PRK11021 225 YWACTVVVLHFPAYGDKQAAAASLPGIFVQ-LFG-GYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLAR 302 (410)
T ss_pred HHHHHHHHHhcCCCcchhhccccHHHHHHH-HhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHh
Confidence 99999887766655443 345677777764 556 445667788888999999999999999999999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039800 373 VHPKTSTPVNASAFLGIFTAAIALF-----TDLTVLLNLVSIGTLFVFYMVANAVIYRRYV 428 (576)
Q Consensus 373 ~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 428 (576)
+| |+|+|+++++++.+++.+..++ .+++.+.++.+...++.|.+.+++.++++++
T Consensus 303 ~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~ 362 (410)
T PRK11021 303 LS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKG 362 (410)
T ss_pred hc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99 6899999999998877655433 4788899999999999999999999988754
|
|
| >TIGR03810 arg_ornith_anti arginine/ornithine antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=406.10 Aligned_cols=411 Identities=18% Similarity=0.259 Sum_probs=331.2
Q ss_pred cccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCC-CchhHHHHHHhch
Q 039800 54 KTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVA-GGAFSYLRVTFGE 131 (576)
Q Consensus 54 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~-Gg~y~~~~~~~g~ 131 (576)
|++++++.+++.++.++|+|+|..++..+.. +||. .+++|+++++.+++.+++++|+++++|++ ||.|+|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~-ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAG-AAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 6799999999999999999999999988776 7775 78899999999999999999999999987 5999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (576)
..||++||.+|+++.............++..+++..... ........+.+++++++.+|++|+|..+++|
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~----------~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~ 149 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGG----------NNPPSIIGASVLLWCVHFLVLRGVEGAAFIN 149 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC----------CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999999999988777777666666666655321100 0001124555666778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-CCCCCC-----C----C-CCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchh
Q 039800 212 MILTVLHILFIAFVILMGFWK-DPKNPS-----G----F-FPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIP 280 (576)
Q Consensus 212 ~~~~~~~l~~~~~~~i~~~~~-~~~~~~-----~----~-~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p 280 (576)
.+.+..|++.++++++.++.. +.+++. + + .+..+.++..++..++|+|.|+|.+++++||.|| +||+|
T Consensus 150 ~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip 228 (468)
T TIGR03810 150 TITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVG 228 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccch
Confidence 999999999988877766543 221111 0 0 1122456777888999999999999999999999 79999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-Cch-HHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039800 281 IGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAP-FSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMC 358 (576)
Q Consensus 281 ~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 358 (576)
|++..++..+.++|++.+++.....|.+++++ ++| ..++++ ...+++...++.++++++.+++.++++...||++|
T Consensus 229 ~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~--~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~ 306 (468)
T TIGR03810 229 KATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLE--HMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPL 306 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHH--HHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888877643 445 666777 44447888999999999999999999999999999
Q ss_pred HHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-C
Q 039800 359 VIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF-----TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLG-T 432 (576)
Q Consensus 359 a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~ 432 (576)
+|||||.+||+|+|+| |+|+|+++++++.+++.++.+. ..++.+.++.+...++.|.+++++.+++|+|+++ +
T Consensus 307 a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~ 385 (468)
T TIGR03810 307 LMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQER 385 (468)
T ss_pred HHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999 7899999999998877555433 4688899999999999999999999998876531 1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHH
Q 039800 433 TNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLN 512 (576)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (576)
.|++ .++.+.++.+.+
T Consensus 386 ~~~~----------------------------------------------------------------~~~~~~l~~~~~ 401 (468)
T TIGR03810 386 GRRK----------------------------------------------------------------QLLIGLVALLYA 401 (468)
T ss_pred chhh----------------------------------------------------------------hHHHHHHHHHHH
Confidence 1111 134667777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHhhh
Q 039800 513 IFLLGSLDGPSYVRFGFFSALAVLVYLLYSV 543 (576)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~ 543 (576)
.+.+...++.......+.+++|+..|++.+|
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~ 432 (468)
T TIGR03810 402 VWLIYAAGLKYLLLSAILYAPGIYFYARARK 432 (468)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777767777778888888855333
|
Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. |
| >TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-46 Score=395.55 Aligned_cols=434 Identities=18% Similarity=0.284 Sum_probs=321.1
Q ss_pred cccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHH-HHHHHHHHHhhhcCcCCCchhHHHHHHhchh
Q 039800 54 KTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCA-LLSAFCYTEFAVDMPVAGGAFSYLRVTFGEF 132 (576)
Q Consensus 54 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~-~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~ 132 (576)
||++.++++.+.+..+++.... + .. +. .|+..+++|++++++. ++.+++++||++++|++||.|.|+++++|+.
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~~~--~-~~-a~-~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLRGL--P-AE-AE-YGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHhhcc--h-HH-HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 4599999999998888663322 2 22 23 7888888999999876 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHH
Q 039800 133 AAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNM 212 (576)
Q Consensus 133 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 212 (576)
+||+.+|.+|+++....+......+..+....+... . .+..+.+......+.+++.++.+.+|++|+|..+++++
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~ 150 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEAT--V---DESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAK 150 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--c---CcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 999999999999987666554433333332211100 0 01111111111245556667788999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHhhcc----C-CC---CCCCCCCC--chhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhh
Q 039800 213 ILTVL-HILFIAFVILMGFWK----D-PK---NPSGFFPY--GAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPI 281 (576)
Q Consensus 213 ~~~~~-~l~~~~~~~i~~~~~----~-~~---~~~~~~~~--g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ 281 (576)
+...+ +++.++++++.++.. + .. ++.++.|+ ++.++..+. ..+|+|.|+|.++.++||+|||+||+||
T Consensus 151 ~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~iPr 229 (474)
T TIGR03813 151 WGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNYPI 229 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccchhH
Confidence 87554 455544444444332 1 10 11122232 233333332 4578999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCch----HHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039800 282 GVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAP----FSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYM 357 (576)
Q Consensus 282 ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 357 (576)
|+..++.++.++|++.++++....|+++...+.+ +.+.++ ..|.++...++.+...++.+++.++++.+.||++
T Consensus 230 Ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~ 307 (474)
T TIGR03813 230 AILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFH--WAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGM 307 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHH--HcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888887654333 444555 5566778888888888899999999999999999
Q ss_pred HHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh--------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039800 358 CVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF--------TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVN 429 (576)
Q Consensus 358 ~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~ 429 (576)
+++||||.+|++|+|+| |+|+|+++++++.+++.++.++ ..++.+.++.+...++.|++.+++.+++|+|+
T Consensus 308 ~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~ 386 (474)
T TIGR03813 308 LAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQ 386 (474)
T ss_pred HHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999 8999999999998876543322 23678888888889999999999999999988
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHH
Q 039800 430 LGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISI 509 (576)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (576)
|+++|||| + +.++++.+.+++.++++.++..++.++|+.......
T Consensus 387 ~~~~rpf~--------------------~-p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~-------------- 431 (474)
T TIGR03813 387 PDRPRPYR--------------------I-PGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTGS-------------- 431 (474)
T ss_pred CCCCCCeE--------------------e-cCCccchhHHHHHHHHHHHHHHheeEeCCcccCCCc--------------
Confidence 88888876 1 234455568899999999999999999987443221
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 510 FLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
++|| +.+.+++.+++..++|+.|+||+
T Consensus 432 --------~~ny-~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
T TIGR03813 432 --------PTRY-VGLLIGLAALFVTAPFLIYARRK 458 (474)
T ss_pred --------hHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 2344 33555666667777777776554
|
Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain. |
| >TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=388.67 Aligned_cols=401 Identities=16% Similarity=0.221 Sum_probs=298.8
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHH-HHHHHHHHHHhhhcCc-CCCchhHHHHHHhc
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLC-ALLSAFCYTEFAVDMP-VAGGAFSYLRVTFG 130 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~-~~~~a~~~~el~~~~p-~~Gg~y~~~~~~~g 130 (576)
+|+++.++++.+.++.+.+ +...+ .. ...|...+..|++++++ .++.+++++||++++| ++||.|+|+++++|
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~-~~--a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYP-TF--ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhH-HH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 5679999999999988864 33223 22 23677777778887776 6889999999999997 99999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 131 EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 131 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
+++||+++|.+|+......+.........+...+..+. ++.+.....+..++++++++++|+.|.|...++
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~---------~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i 148 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPA---------LNEDPIIKFIAALIIFWALAFSQFGGTKRTAKI 148 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch---------hccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999998876555443333333333322110 001000122455566778899999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHhhcc----CCC----CCCCCCCCc-hhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchh
Q 039800 211 NMILTVLHILF-IAFVILMGFWK----DPK----NPSGFFPYG-AKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIP 280 (576)
Q Consensus 211 ~~~~~~~~l~~-~~~~~i~~~~~----~~~----~~~~~~~~g-~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p 280 (576)
+++.....++. ++++++.++.. ++. +..++.|.. ..+....+...+|+|.|+|.+++++||+|||+||+|
T Consensus 149 ~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~P 228 (507)
T TIGR00910 149 AKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYP 228 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCccccc
Confidence 99876654443 33333333222 111 112333321 123444555578999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchH----HHhhccCCCC--hhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039800 281 IGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPF----SGAFSGKSDG--WKWVSNVIGVGASFGILTSLLVAMLGQA 354 (576)
Q Consensus 281 ~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~s 354 (576)
||++.+++++.++|.+..+.+....|+++++.+++. .+.+. ..+ .++...++.+..+++.+++.++++.+.|
T Consensus 229 rAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~s 306 (507)
T TIGR00910 229 LAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLIL--HFAHEIEWLVKVIAALIAFGVLAEIASWIVGPS 306 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHH--hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888888888877544333 33333 332 3567778888889999999999999999
Q ss_pred HHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 355 RYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF---------TDLTVLLNLVSIGTLFVFYMVANAVIYR 425 (576)
Q Consensus 355 R~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 425 (576)
|+++++||||.+|++|+|+| |+++|+++++++++++.++.++ ..++.+.++.+...++.|++..++++++
T Consensus 307 R~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~l 385 (507)
T TIGR00910 307 RGMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVL 385 (507)
T ss_pred HHHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 8899999999999888664432 1345566778889999999999999999
Q ss_pred hhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCC
Q 039800 426 RYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAK 491 (576)
Q Consensus 426 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (576)
|+|+|+.+||||. +.++++.++++++++++.++..++.++|+...
T Consensus 386 r~k~p~~~rpf~~---------------------pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp~~~ 430 (507)
T TIGR00910 386 ILKHPDLKRTFNI---------------------PGGIGGKLIIAGIGFLLSIFAFFISFLPPANI 430 (507)
T ss_pred HHhcCCCCCCeEe---------------------cCCccchhhHHHHHHHHHHHHHheeeeCCCcc
Confidence 9999999998762 12344545788999999999999999998743
|
Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 |
| >TIGR00930 2a30 K-Cl cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=413.45 Aligned_cols=425 Identities=15% Similarity=0.161 Sum_probs=336.9
Q ss_pred CCccccChHHHHHHH-hhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhc-CcCCCchhHHHHH
Q 039800 51 DMRKTLRWYDLVCFG-IGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVD-MPVAGGAFSYLRV 127 (576)
Q Consensus 51 ~l~r~l~~~~~~~~~-~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~-~p~~Gg~y~~~~~ 127 (576)
+-+|++|+++.+.+. +++++|+|+|..++.++.. +|.. .++.|+++++++++++++++|++++ .|++||.|.|++|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~-aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisr 151 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQ-AGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISR 151 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 456789999999888 9999999999999999887 7765 7889999999999999999999998 9999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 128 TFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 128 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
++|+..|+.+||.+++++.+..+.++.++++|+..+++...... . ..+.+...+++.+++++++++|+.|+|..
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~--~----~~~~~~~~iia~i~l~ll~~In~~Gvk~~ 225 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKI--M----VDPINDIRIYGTVTVVVLLGISFAGMEWE 225 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--c----cCccccchHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999998875321100 0 00111123678888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC------------C----CCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWKDP------------K----NPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEE 271 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~~~------------~----~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E 271 (576)
.|+|.+++.++++.++.+++.++.... . |+.+..+.+..++...+...+++|.|+|..++++||
T Consensus 226 ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgE 305 (953)
T TIGR00930 226 NKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGD 305 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998777766554210 0 111111223334777777778899999999999999
Q ss_pred hcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-Cc------------------hHHHhhcc---CCCChhH
Q 039800 272 VKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EA------------------PFSGAFSG---KSDGWKW 329 (576)
Q Consensus 272 ~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-~~------------------p~~~~~~~---~~~g~~~ 329 (576)
+|||+|++|||++.++++++++|++.++++....+.+.... +. |....+.+ .......
T Consensus 306 lKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~ 385 (953)
T TIGR00930 306 LKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSP 385 (953)
T ss_pred ccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhh
Confidence 99999999999999999999999999988777776543221 11 11111100 0001123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHH
Q 039800 330 VSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVP--AWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLV 407 (576)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~ 407 (576)
...++.++++++.+++.++++.+++|++++|||||.+| ++|+|+|+|+++|++|++++++++.++.++++++.+..+.
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~li 465 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPII 465 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56789999999999999999999999999999999999 8999999999999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhc
Q 039800 408 SIGTLFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVV 487 (576)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (576)
+..++++|+++++++++.|++++...||
T Consensus 466 s~~fLl~Y~lvnla~~~l~~~~~p~~RP---------------------------------------------------- 493 (953)
T TIGR00930 466 SNFFLASYALINFSCFHASLLRSPGWRP---------------------------------------------------- 493 (953)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCC----------------------------------------------------
Confidence 9999999999999999888665432222
Q ss_pred cCCCCCCccccccccHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 488 PQAKKPEFWGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
.|+. ..+++++++++.|++++...++ ....+.+++++++|+++.+|+
T Consensus 494 -------~fk~-~~~~~sllG~l~c~~lmf~i~w---~~ali~~~i~~~ly~~~~~~~ 540 (953)
T TIGR00930 494 -------RFKY-YHWWLSLLGASLCCAIMFLISW---WAALVAMVIALFLYKYVTYKK 540 (953)
T ss_pred -------cccc-chHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhccC
Confidence 1111 3457888888888888877654 455556666767776655443
|
|
| >COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=366.93 Aligned_cols=378 Identities=31% Similarity=0.534 Sum_probs=322.2
Q ss_pred CCCCCccccChHH-HHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHH
Q 039800 48 SGSDMRKTLRWYD-LVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126 (576)
Q Consensus 48 ~~~~l~r~l~~~~-~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~ 126 (576)
++++++|+++.++ ...+..+.++|.|++..++..... + +...++|++++++..+.+++++|+++++|++||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~-~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGL-A-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHh-c-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehh
Confidence 4566788999999 889999999999999998887665 3 455555999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchh
Q 039800 127 VTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRD 206 (576)
Q Consensus 127 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 206 (576)
+.+||+.|+.++|.+++++....+........++...++... .+ ..+......++.++.++.+++|++|+|.
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~ln~~G~~~ 155 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-LL-------SIGPLLIILIALALIALLTLLNLRGIKA 155 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hh-------cCCchHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999998888876422 00 0000113478888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc-CCC--CCC-CCC--CCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchh
Q 039800 207 SSVVNMILTVLHILFIAFVILMGFWK-DPK--NPS-GFF--PYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIP 280 (576)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~--~~~-~~~--~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p 280 (576)
..+++.+.+.++++.++++.+.++.+ +.. +.. .+. .....++..++...+|+|.|+|.+++++||+|||+|++|
T Consensus 156 ~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip 235 (466)
T COG0531 156 SAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIP 235 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcccccc
Confidence 99999999999999999998888777 332 221 111 123446888889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCC---chHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039800 281 IGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAE---APFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYM 357 (576)
Q Consensus 281 ~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 357 (576)
|+++.+.+.++++|++..++.....|.+++... .|+.++.. ..++.+...++.+..+.+.+++.+++..+.+|.+
T Consensus 236 ~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~ 313 (466)
T COG0531 236 RAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAAL--FGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHH--HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887655433 68888887 4444789999999999999999999999999999
Q ss_pred HHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHH-HHHHhh----cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 039800 358 CVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTA-AIALFT----DLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGT 432 (576)
Q Consensus 358 ~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~-~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 432 (576)
++|+|||.+|++++|+|+|+++|+++++++.+++. +..... .++.+.++.+...++.|.+..++.+.+|+|+++.
T Consensus 314 ~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 393 (466)
T COG0531 314 YAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDL 393 (466)
T ss_pred HHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999998 333322 4689999999999999999999999999987776
Q ss_pred CCCCc
Q 039800 433 TNPQP 437 (576)
Q Consensus 433 ~~~~~ 437 (576)
+|+++
T Consensus 394 ~~~~~ 398 (466)
T COG0531 394 KRPFR 398 (466)
T ss_pred CCccc
Confidence 66654
|
|
| >PRK15238 inner membrane transporter YjeM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=363.00 Aligned_cols=404 Identities=16% Similarity=0.275 Sum_probs=289.3
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHH-HHHHHHHHHHhhhcCcC-CCchhHHHHHHh
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLC-ALLSAFCYTEFAVDMPV-AGGAFSYLRVTF 129 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~-~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~ 129 (576)
++|++++++++.+.++.++|.+.. +..... +|+..++.+++++++ .++.+++++|+++++|+ +||.|+|+++++
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~~---~~~~~~-~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFANS---PRAFYL-MGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCch---HHHHHH-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 478899999999999999996532 333333 788876667777655 67899999999999997 899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCCC-cccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 130 GEFAAFLTGSNLILEYVMSNAAVARGFAS-YFGTAIGVPT-AKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 130 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
||++|++++|.++.+++............ .....++... ..|+.. +. ........++++++.+++++|++|+|..
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~t~vn~~g~~~~ 157 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFL--GL-NSTQVVGILAVIWMILVTFVASKGINKI 157 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhh--cc-cchHHHHHHHHHHHHHHHHHHccchHHH
Confidence 99999999999888877665443322211 1112222211 111110 00 0111122455566668899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hhcc--CCCC---CCCCC---CCc---hhHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILM----GFWK--DPKN---PSGFF---PYG---AKGVFNGAAMVYLSYIGYDAVSTMAEEV 272 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~----~~~~--~~~~---~~~~~---~~g---~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 272 (576)
++++++.+..++...+++++. .+.. +..+ ..++. +.+ ..+++.++..+.|+|.|+|..++++||+
T Consensus 158 ~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 237 (496)
T PRK15238 158 AKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKT 237 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 999999887776543222211 1111 1111 11111 111 1357777888999999999999999999
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCC-------CchHHHhhccCCCC-----------------hh
Q 039800 273 KNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDA-------EAPFSGAFSGKSDG-----------------WK 328 (576)
Q Consensus 273 k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~-------~~p~~~~~~~~~~g-----------------~~ 328 (576)
|||+|++||++..++..+.++|++..+.+....|+++... +.|+. +++ ..| .+
T Consensus 238 ~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~g~~~~~~~g~~~~~~~~~g~ 314 (496)
T PRK15238 238 ENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMN--NLGYTLGHALGLSPAASLTLGV 314 (496)
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHH--HHHHHHHHHhccchhhhhhhhH
Confidence 9999999999999999999999999888777777665532 12221 111 111 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh---h------c
Q 039800 329 WVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF---T------D 399 (576)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~---~------~ 399 (576)
++..++.+..+.+.+++.+++.++.+|.++..+|||.+||+|+|+| |+|+|++|++++.++..++... . .
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~ 393 (496)
T PRK15238 315 WFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAF 393 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 5556778888999999999999999999999999999999999999 8999999999998877655433 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHH
Q 039800 400 LTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAV 479 (576)
Q Consensus 400 ~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (576)
|+.+.++.+...++.|++++++++++|| +++.+||++. + .++...+.++++.+++.++
T Consensus 394 f~~l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~-----------------~----~~~~~~~~~~~~~~~~~~~ 451 (496)
T PRK15238 394 FNILTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVV-----------------F----KTKKSTLIATIVVVLVVGF 451 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcee-----------------c----CCcceehhHHHHHHHHHHH
Confidence 7889999999999999999999999876 5777777641 1 1221222667777777777
Q ss_pred HHHHHHhcc
Q 039800 480 LQIFHCVVP 488 (576)
Q Consensus 480 ~~~~~~~~~ 488 (576)
..++.+.+|
T Consensus 452 ~~~~~~~~p 460 (496)
T PRK15238 452 ANVFTIIQP 460 (496)
T ss_pred HHHHheeCC
Confidence 777776665
|
|
| >PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-43 Score=368.37 Aligned_cols=361 Identities=29% Similarity=0.549 Sum_probs=307.8
Q ss_pred cChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHH-HHHHHHHHHhhhcCcCCCchhHHHHHHhchhHH
Q 039800 56 LRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCA-LLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAA 134 (576)
Q Consensus 56 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~-~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g 134 (576)
+++++.+.+.++.++|+|++..+ .. ..+|+..+++|++++++. ++.+++|+|+++++|++||.|.|+++.+||++|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~-~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AA-ASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HH-TCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 58899999999999999998776 33 337888888899998887 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 039800 135 FLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMIL 214 (576)
Q Consensus 135 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (576)
++.+|.+++.+....+.....+.+++...++.+.+.+. .....++++++++.+.+|++|.|..+|++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 147 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSP----------WPQFLIAIILILLFTLLNLLGIKLSGKIQNIL 147 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSH----------HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhcccccccccc----------chheeeeecccccceEeeechhhhhhhhhhhh
Confidence 99999999999999999998899999877653211110 01236788888999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHhhcc-CCCC-------CCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHH
Q 039800 215 TVLHI-LFIAFVILMGFWK-DPKN-------PSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSG 285 (576)
Q Consensus 215 ~~~~l-~~~~~~~i~~~~~-~~~~-------~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~ 285 (576)
+.+++ ..++++++.++.. +.+. ...+.++++.+++.++...+|+|.|+|.+++++||+|| ||+||++..
T Consensus 148 ~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~ 225 (426)
T PF13520_consen 148 TVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIII 225 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHH
T ss_pred hhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeeccc
Confidence 99999 5766766666665 2111 13455667778899999999999999999999999887 899999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCcCCCCc----hHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 039800 286 SVIIVTVLYCLMAASMSMLMPYDMIDAEA----PFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIG 361 (576)
Q Consensus 286 ~~~~~~i~y~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 361 (576)
+.+.+.++|++.+++.....|+++.+..+ +....++ ..++++...++.+..+++.+++.++.+.+.+|++++|+
T Consensus 226 ~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 303 (426)
T PF13520_consen 226 SIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLAS--AVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMA 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHH--HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHhhhhheeeecccchhhhcccccccccchhhc--cccccccccccccccccccccccchhhcchhhcccccc
Confidence 99999999999999999999988765432 4556666 56657899999999999999999999999999999999
Q ss_pred hcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHH-h-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 039800 362 RSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIAL-F-----TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTN 434 (576)
Q Consensus 362 ~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~-~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 434 (576)
|||.+|++++|+| |+|+|++++++..+++.++.. + .+++.+.++.+......|.+..++.++.|+|+++.+|
T Consensus 304 ~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 381 (426)
T PF13520_consen 304 RDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKR 381 (426)
T ss_dssp HTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH
T ss_pred cccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC
Confidence 9999999999999 999999999999999966543 2 2578999999999999999999999999999887655
|
... |
| >PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=384.08 Aligned_cols=359 Identities=27% Similarity=0.483 Sum_probs=304.6
Q ss_pred HHHHhhhhhhhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHHH
Q 039800 62 VCFGIGGMVGAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSN 140 (576)
Q Consensus 62 ~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~ 140 (576)
+++++++++|+|.|...+..+.. +|+ ..++++++++++.++.+.+++|+++++|++||.|.|++|.+||..|+.+||.
T Consensus 3 ~~~~ig~~ig~g~f~~~g~~~~~-~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~ 81 (478)
T PF00324_consen 3 FMISIGGIIGTGLFLGSGFAIAA-AGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWA 81 (478)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHh-cccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHH
Confidence 45788999999999999998887 777 6899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 039800 141 LILEYVMSNAAVARGFASYFGTA--IGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLH 218 (576)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 218 (576)
|++.++...+.+....+.+++.+ ++..+..|... .+++.++.++++.+|++|+|...++|.++..++
T Consensus 82 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~ 150 (478)
T PF00324_consen 82 YWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWG-----------ILIAIIFILLITLLNLFGVRVSGKIEFILTIIK 150 (478)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccccccccccccccc-----------chhhhhhhhhhhhhhhhhhhccchHHHHHHHHh
Confidence 99999999999988877777665 32222122110 034677888889999999999999999999999
Q ss_pred HHHHHHHHHHh-hcc----CCCCC---------CCCCCCc--------hhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcC
Q 039800 219 ILFIAFVILMG-FWK----DPKNP---------SGFFPYG--------AKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPV 276 (576)
Q Consensus 219 l~~~~~~~i~~-~~~----~~~~~---------~~~~~~g--------~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~ 276 (576)
++.++.+++.+ +.. ++.+. .+..+.+ +.+++.++..++++|.|+|.++.++||+|||+
T Consensus 151 ~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~ 230 (478)
T PF00324_consen 151 LIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR 230 (478)
T ss_pred hhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch
Confidence 99998888877 322 11111 1123333 78899999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCC------chHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 039800 277 KDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAE------APFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAM 350 (576)
Q Consensus 277 r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~------~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 350 (576)
|++|||+..+++.++++|++..++.....|+++.... +|+..+.+ ..+.++...++.+..+.+.+++.++.+
T Consensus 231 k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--~~~~~~~~~i~~~~~l~s~~s~~~~~~ 308 (478)
T PF00324_consen 231 KTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQ--YSGGPWLAWIVNAGILISAFSSANASL 308 (478)
T ss_pred hhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhh--hcccccccceecccchhhhhhhhhhhh
Confidence 9999999999999999999999999998998875321 48888888 788899999999999999999999999
Q ss_pred hhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 351 LGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF------TDLTVLLNLVSIGTLFVFYMVANAVIY 424 (576)
Q Consensus 351 ~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~ 424 (576)
++.||++++|||||.+|+++.++|+|+|+|++|++++.+++++..+. ..++.+.++.++..+..|.+.+++.++
T Consensus 309 ~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~ 388 (478)
T PF00324_consen 309 YAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIR 388 (478)
T ss_pred cccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhh
Confidence 99999999999999999777777779999999999999988776654 235677888889999999999999998
Q ss_pred HhhccCCCCC
Q 039800 425 RRYVNLGTTN 434 (576)
Q Consensus 425 ~r~~~~~~~~ 434 (576)
+|++.+.++|
T Consensus 389 ~r~~~~~~~~ 398 (478)
T PF00324_consen 389 FRKKFKYRGR 398 (478)
T ss_pred hhhhhccccc
Confidence 8877554433
|
A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane |
| >TIGR00837 araaP aromatic amino acid transport protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-28 Score=251.24 Aligned_cols=337 Identities=15% Similarity=0.129 Sum_probs=264.2
Q ss_pred HHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHHHHH
Q 039800 63 CFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLI 142 (576)
Q Consensus 63 ~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~ 142 (576)
.+.++.++|+|++..|...... +++..++..+++++.+...+++++|+++++|++||.|+|.++.+||..|++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~-g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGA-WFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 4567889999999999886654 555566778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCC-cccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Q 039800 143 LEYVMSNAAVARGFASYFGTAIGVPT-AKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILF 221 (576)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 221 (576)
+.......++....++++..+++... ..+. .....+++.+++..+++.|.|...|++.+++..++..
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~ 150 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGFPWS------------ARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIA 150 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCCCcc------------HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 98888888888877888877664211 1110 1245666777888999999999999999999999999
Q ss_pred HHHHHHHhhcc-CCCCCCCCC--CCchhHHHHHHHHHHHHHhhhh-hHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHH
Q 039800 222 IAFVILMGFWK-DPKNPSGFF--PYGAKGVFNGAAMVYLSYIGYD-AVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLM 297 (576)
Q Consensus 222 ~~~~~i~~~~~-~~~~~~~~~--~~g~~~~~~~~~~~~~~f~G~e-~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~ 297 (576)
++++++.++.+ +.+++.+.. +.++.++..++...+++| |+| ......+|.||++|++||++..+..++.++|++.
T Consensus 151 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~ 229 (381)
T TIGR00837 151 FALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILW 229 (381)
T ss_pred HHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777776 555544332 235667888888888888 565 6888899998779999999999999999999999
Q ss_pred HHHHHhcccCCcCCC-------CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhh
Q 039800 298 AASMSMLMPYDMIDA-------EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWF 370 (576)
Q Consensus 298 ~~~~~~~~~~~~~~~-------~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~ 370 (576)
..+..+..|++++.+ .+++.+++++ ..|.++...++.+...+++.++.+++.++.++. +++.+
T Consensus 230 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~ 299 (381)
T TIGR00837 230 QLATMGNLPRSEFLPIIAKGGNLDGLVNALQG-VLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLF 299 (381)
T ss_pred HHHHhCCCCHHHHHHHHHcCCChHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHh
Confidence 999999999887631 2466777774 677788899999999999999999988877744 34445
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 371 ARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIY 424 (576)
Q Consensus 371 ~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 424 (576)
++.|++++ |..+.++..+...++..+.....+..+...+....++...+..+.
T Consensus 300 ~~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~ 352 (381)
T TIGR00837 300 KFDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALL 352 (381)
T ss_pred CCCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444434 678888888888888777666666666666666665555554443
|
aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli. |
| >TIGR00912 2A0309 spore germination protein (amino acid permease) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-22 Score=208.81 Aligned_cols=283 Identities=16% Similarity=0.171 Sum_probs=231.2
Q ss_pred ccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHH
Q 039800 55 TLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAA 134 (576)
Q Consensus 55 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g 134 (576)
+++.+|.+.+.++.++|+|++..|+..+.. +|+++|++++++++.+++.++++.|+++++|+. +.++|.++.+||..|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~-a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQS-AGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILG 79 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhc-cCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHH
Confidence 589999999999999999999999988775 888899999999999999999999999999987 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 039800 135 FLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMIL 214 (576)
Q Consensus 135 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (576)
++.+|.++.......+......+++++..+.++.+.+ .+...+++.+...+..|.|..+|++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~~---------------~~~l~~l~~~~~~~~~Gi~~i~r~~~i~ 144 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTPII---------------VIIILIIIVSIYIVRKGIEVLLRTAEIL 144 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 9999999988888888888888888876554333322 5667777788889999999999999999
Q ss_pred HHHHHHHH-HHHHHHhhcc-CCCCCCCCCCCchhHHHHHHH-HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHH
Q 039800 215 TVLHILFI-AFVILMGFWK-DPKNPSGFFPYGAKGVFNGAA-MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVT 291 (576)
Q Consensus 215 ~~~~l~~~-~~~~i~~~~~-~~~~~~~~~~~g~~~~~~~~~-~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~ 291 (576)
....+... +++....... +.+|..|..++|+.+++.+.. ...++|.|+|......+|+||| |+.||++..+...++
T Consensus 145 ~~~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~~ 223 (359)
T TIGR00912 145 LIIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIGV 223 (359)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHHH
Confidence 98887773 4444333333 677888888899988888887 8899999999999999999996 579999999999999
Q ss_pred HHHHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChh-HHH---HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039800 292 VLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWK-WVS---NVIGVGASFGILTSLLVAMLGQARYM 357 (576)
Q Consensus 292 i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~-~~~---~~~~~~~~~~~~~~~~~~~~~~sR~l 357 (576)
++|.+..++..+..++++.+. ..|..+..+. ...+ ... .++....+.+.+.....+++..++.+
T Consensus 224 ~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~--i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~ 292 (359)
T TIGR00912 224 LLYILTTFVSISVFGGNVTKNLYWPTLELIKL--INIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGL 292 (359)
T ss_pred HHHHHHHHHHHheecHHHhhhhcccHHHHHHH--hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999898887754 5688888873 3322 333 44444444555555556666666664
|
This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases. |
| >KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=207.29 Aligned_cols=365 Identities=17% Similarity=0.202 Sum_probs=269.8
Q ss_pred ccChHHH-HHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCc-CCCchhHHHHHHhch
Q 039800 55 TLRWYDL-VCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMP-VAGGAFSYLRVTFGE 131 (576)
Q Consensus 55 ~l~~~~~-~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p-~~Gg~y~~~~~~~g~ 131 (576)
+++...- ..=.+-.+.|.-.|......... +|.. .+...+++++..++++.+++.+++.-- .+||.|.-.+|.+||
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~-AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGP 191 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGM-AGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGP 191 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCc
Confidence 4554333 33344566788788877777665 7765 666677888888899999999999865 689999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCccc-ccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGT-AIGVPTAKW-RLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
..|-.+|.++.++.....+.+..+..+.+.. +++...-.. .-........++...+.+.+++++.+++...|+|...+
T Consensus 192 EFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk 271 (1075)
T KOG2082|consen 192 EFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNK 271 (1075)
T ss_pred cccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888886654 333210000 00001122233445578889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc--CCCCC---------------C----------------------------------
Q 039800 210 VNMILTVLHILFIAFVILMGFWK--DPKNP---------------S---------------------------------- 238 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~~i~~~~~--~~~~~---------------~---------------------------------- 238 (576)
+..++..+.++.++.+.+.++-. ++..+ .
T Consensus 272 ~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y 351 (1075)
T KOG2082|consen 272 FAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEY 351 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccc
Confidence 99999999888887776665543 21110 0
Q ss_pred ----------CC------------C----------CCc-------------------hhHHHHHHHHHHHHHhhhhhHhh
Q 039800 239 ----------GF------------F----------PYG-------------------AKGVFNGAAMVYLSYIGYDAVST 267 (576)
Q Consensus 239 ----------~~------------~----------~~g-------------------~~~~~~~~~~~~~~f~G~e~~~~ 267 (576)
++ + +.| -..|..-+..-+-+.+|+=+.++
T Consensus 352 ~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSN 431 (1075)
T KOG2082|consen 352 FSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSN 431 (1075)
T ss_pred cccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCC
Confidence 00 0 000 01122222233456688889999
Q ss_pred hhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCC--chHH--HhhccCCCChhHHHHHHHHHHHHHHH
Q 039800 268 MAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAE--APFS--GAFSGKSDGWKWVSNVIGVGASFGIL 343 (576)
Q Consensus 268 ~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~--~p~~--~~~~~~~~g~~~~~~~~~~~~~~~~~ 343 (576)
.+++.|||+|.+|.+.+.+.+....+|+...+.+.++.....+.+. ..+. .+.. .+. ....+++.++.+++.+
T Consensus 432 rSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva--~la-WPsPwVi~IGsFlST~ 508 (1075)
T KOG2082|consen 432 RSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVA--TLA-WPSPWVIVIGSFLSTC 508 (1075)
T ss_pred CCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEE--Eec-CCCceeeehhHHHHHh
Confidence 9999999999999999999999999999999888877663332110 0000 0111 111 1235678889999999
Q ss_pred HHHHHHHhhHHHHHHHHhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 039800 344 TSLLVAMLGQARYMCVIGRSSVVP--AWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANA 421 (576)
Q Consensus 344 ~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 421 (576)
++.+..+.++.|+|.+.|||+.+| +.|+|.+ ++|-|.+|++++.+++-...++++.+.+..+.++.++++|.+++++
T Consensus 509 GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLa 587 (1075)
T KOG2082|consen 509 GAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLA 587 (1075)
T ss_pred HHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999 8899998 8999999999999999988889999999999999999999999887
Q ss_pred HHH
Q 039800 422 VIY 424 (576)
Q Consensus 422 ~~~ 424 (576)
+.+
T Consensus 588 Cav 590 (1075)
T KOG2082|consen 588 CAV 590 (1075)
T ss_pred HHH
Confidence 654
|
|
| >KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=200.34 Aligned_cols=374 Identities=18% Similarity=0.201 Sum_probs=285.2
Q ss_pred ccChHHHHHHHhh-hhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCc-CCCchhHHHHHHhch
Q 039800 55 TLRWYDLVCFGIG-GMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMP-VAGGAFSYLRVTFGE 131 (576)
Q Consensus 55 ~l~~~~~~~~~~~-~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p-~~Gg~y~~~~~~~g~ 131 (576)
+++.++-++.-.. +|...-.|...+.++.. +|-. .+.-.+++-.+.+++.++.+.+++.-- +.||.|.-++|.+||
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~-aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQ-AGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 7887766554443 34555677778887776 7765 666677777888888999999999877 778999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (576)
..|--.|..++++.+..++.+..++.+-+.+-++.....-. ....+|.++-+..+.+..+..++..+++.|...++|..
T Consensus 145 EfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~s-g~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas 223 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGAS-GSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKAS 223 (945)
T ss_pred ccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCc-ccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhh
Confidence 99999999999999999999999999988888875331100 01124555555557777888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccC-CCCC------------------CCCC-----------------CCchhHHHHHHHHH
Q 039800 212 MILTVLHILFIAFVILMGFWKD-PKNP------------------SGFF-----------------PYGAKGVFNGAAMV 255 (576)
Q Consensus 212 ~~~~~~~l~~~~~~~i~~~~~~-~~~~------------------~~~~-----------------~~g~~~~~~~~~~~ 255 (576)
+++.....+.+....+..+..+ .++. +++. ..+...+-..+.+.
T Consensus 224 ~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~ 303 (945)
T KOG1288|consen 224 NILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVF 303 (945)
T ss_pred hhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheee
Confidence 8888776666655555444331 1110 1110 01112244444455
Q ss_pred HHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHH
Q 039800 256 YLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIG 335 (576)
Q Consensus 256 ~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~ 335 (576)
+-.-+|.-+.+.|++|.|+|.|.+||+.+.++....+.|++..+.+....|...+.++..+.+... ....++.
T Consensus 304 F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~is-------l~p~fi~ 376 (945)
T KOG1288|consen 304 FPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMHIS-------LHPPFIL 376 (945)
T ss_pred eccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheeecc-------ccchHHH
Confidence 556688889999999999999999999999999999999999999998888776665543322221 2235666
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 039800 336 VGASFGILTSLLVAMLGQARYMCVIGRSSVVP--AWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLF 413 (576)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 413 (576)
++.+.+.+.+..+.+.++||++.++|||..+| -.++|.....+.|+.|+.++..+.-++.+.+++|.+..+.++.+++
T Consensus 377 iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLl 456 (945)
T KOG1288|consen 377 IGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLL 456 (945)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 77777788888899999999999999999999 6788888788999999999999998888889999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCC-Cc
Q 039800 414 VFYMVANAVIYRRYVNLGTTNP-QP 437 (576)
Q Consensus 414 ~~~~~~~~~~~~r~~~~~~~~~-~~ 437 (576)
+|..++++++.++....-.-|| +|
T Consensus 457 ty~~vNLacl~LeissAPNFRPtFk 481 (945)
T KOG1288|consen 457 TYGAVNLACLLLEISSAPNFRPTFK 481 (945)
T ss_pred HHHHHHHHHHHhhhccCCCCCchhh
Confidence 9999999999887755333343 55
|
|
| >TIGR00796 livcs branched-chain amino acid uptake carrier | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-18 Score=176.89 Aligned_cols=342 Identities=14% Similarity=0.136 Sum_probs=252.3
Q ss_pred HHhhhhhhhhHHhchHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHHH
Q 039800 64 FGIGGMVGAGVFVTTGRASRLNAGPA---IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSN 140 (576)
Q Consensus 64 ~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~ 140 (576)
+.++.-+|+|.+..|+..-.. +|.. +.++|+++++...+.+++ +.|++||.|++.++.+||..|++.+|.
T Consensus 3 ~lFamffGAGNlIfPp~lG~~-aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~ 75 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLA-AGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVI 75 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHH
Confidence 345556899999999888777 5532 677899999998888877 889999999999999999999999996
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 039800 141 LILEYVMS-----NAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILT 215 (576)
Q Consensus 141 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 215 (576)
.++..-.. .+..+...+ +..+++...... ...+..+++..++.++++++.|...+++++++
T Consensus 76 ~~l~iGP~~aiPRtaa~s~e~~--i~p~~~~~~~~~------------~l~i~siiff~i~~~l~~~~~k~~~~iGk~LT 141 (378)
T TIGR00796 76 LYLTIGPLFAIPRTATVSFEMG--IAPLLHSPTSLL------------ALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLT 141 (378)
T ss_pred HHHHHHhchhhhHHHHHHHHHH--HHhccCcccchH------------HHHHHHHHHHHHHHHHHcCcccHHHHhHHHHH
Confidence 66443222 222222211 333333211000 12256667777778899999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCC-CCCCCCch-hHHHHHHHHHHHHHh-------hhhhHhhhhh-hhcCcCCchhhHHHH
Q 039800 216 VLHILFIAFVILMGFWKDPKNP-SGFFPYGA-KGVFNGAAMVYLSYI-------GYDAVSTMAE-EVKNPVKDIPIGVSG 285 (576)
Q Consensus 216 ~~~l~~~~~~~i~~~~~~~~~~-~~~~~~g~-~~~~~~~~~~~~~f~-------G~e~~~~~~~-E~k~p~r~~p~ai~~ 285 (576)
..+++.++.+++.++.+..... .+..+..- ..+..++....++|+ |+-.+..+.+ |.|||+|+.|+.+..
T Consensus 142 P~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~ 221 (378)
T TIGR00796 142 PALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKA 221 (378)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999998711111 11111111 457778888888888 9988888888 999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHHhcccCCcCC----CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 039800 286 SV-IIVTVLYCLMAASMSMLMPYDMID----AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVI 360 (576)
Q Consensus 286 ~~-~~~~i~y~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 360 (576)
++ ..+...|+...++..+..+.+... ......++.++ .+| +.+..++.+.+.++++++.++.+.+.++.
T Consensus 222 G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~-~~G-~~G~~ll~i~v~lACLtT~iGli~~~a~~---- 295 (378)
T TIGR00796 222 GLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQH-LFG-SLGSFLLGLIITLACLTTAVGLTTACSEY---- 295 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHH-Hcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 98 666667777888888777755443 23355566664 666 88899999999999999999988885544
Q ss_pred hhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCCCCCCch
Q 039800 361 GRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIY--RRYVNLGTTNPQPT 438 (576)
Q Consensus 361 a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~ 438 (576)
|+|.+|| +|+.+.++...+...+.....++.+.++..-...+.|-+.....+. .|++.|+.+|+||.
T Consensus 296 ---------f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~ 364 (378)
T TIGR00796 296 ---------FHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQI 364 (378)
T ss_pred ---------HHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeh
Confidence 7777754 9999998888777777766789999998888888888665555444 78888888899986
Q ss_pred hHHHH
Q 039800 439 LSFLF 443 (576)
Q Consensus 439 ~~~~~ 443 (576)
.....
T Consensus 365 ~~~~~ 369 (378)
T TIGR00796 365 TLIVA 369 (378)
T ss_pred HHHHH
Confidence 54433
|
transmembrane helical spanners. |
| >PHA02764 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-19 Score=167.32 Aligned_cols=278 Identities=19% Similarity=0.283 Sum_probs=180.8
Q ss_pred cCCCCCccccChHHHHHHHhhhhh-hhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHH
Q 039800 47 KSGSDMRKTLRWYDLVCFGIGGMV-GAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYL 125 (576)
Q Consensus 47 ~~~~~l~r~l~~~~~~~~~~~~~i-g~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~ 125 (576)
|+.++|-|+.+.+|.+...++.+- |.++ ..+........|...+++|+++++++++.+++|+|+++++|++||.|.|.
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYI 83 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYI 83 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEh
Confidence 478999999999999999998773 3322 11211111224556889999999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcch
Q 039800 126 RVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTR 205 (576)
Q Consensus 126 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 205 (576)
+|++||.+|++.||..|+.+..+.+..+-... + + +..+ +.... . .+-. -......+...|.|
T Consensus 84 SRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~--~-~-~~i~-~~~~~-----------f-~~~~-s~~~i~~~i~~~~~ 145 (399)
T PHA02764 84 RTAFSSKFYTIFGISLWLTYVLSQPILGDLVL--L-N-FNIQ-NQFEQ-----------F-LIVE-SLFPIVLLIIANKK 145 (399)
T ss_pred HHhhCccHHHHHHHHHHHHHHhhcchhhheee--e-e-eeeH-HHHHH-----------H-HHHH-HHHHHHHHHHcccH
Confidence 99999999999999999998888776542111 0 0 0000 00000 0 1111 11222333445678
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCCCC--CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHH
Q 039800 206 DSSVVNMILTVLHILFIAFVILMGFWKDPKNP--SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGV 283 (576)
Q Consensus 206 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai 283 (576)
...|...++.....+ ..+.... ..-|+ +.|.-+ .....+...-.-.|.=.|+....++|.||-+|....+-
T Consensus 146 ~~~~~v~il~~a~~i---~aif~~~--~s~n~~~~~f~~s--nt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gy 218 (399)
T PHA02764 146 IYAKIVDILAIAQII---IAIFIAF--KSFNFQYQNFTIS--NTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGY 218 (399)
T ss_pred HHHHHHHHHHHHHHH---HHHHhhc--cceeEEEcceeeh--HHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhh
Confidence 888887775544433 1111111 11111 111111 22455566666777778999999999999988877777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhc
Q 039800 284 SGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRS 363 (576)
Q Consensus 284 ~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 363 (576)
..+...+.++-+..+ +. . -.++.+.+....++-+....--.||+.++|+.|
T Consensus 219 f~s~~~~~~~~ii~s---------------------y~--n------~~il~~~~~~w~~~y~~~~~~~~srli~~~~fd 269 (399)
T PHA02764 219 FVSYGIVAILSIIDS---------------------YS--N------LNILFALMPIWFFSYMPIANKIQSRLIQTMSFD 269 (399)
T ss_pred HHHHHHHHHHHHHHh---------------------hh--h------HHHHHHHHHHHHHhheeeecchHHHHHHHHHhh
Confidence 777666655544433 11 0 011222244445555555566789999999999
Q ss_pred CCCchhhhhhcCCCCCch
Q 039800 364 SVVPAWFARVHPKTSTPV 381 (576)
Q Consensus 364 g~lP~~~~~~~~~~~~P~ 381 (576)
+.+|+.|+|.|| ++|.
T Consensus 270 ~~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 270 KVLPEKFSKINP--NVLL 285 (399)
T ss_pred hhchHHHhccCC--Ccee
Confidence 999999999994 6887
|
|
| >PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-16 Score=163.17 Aligned_cols=290 Identities=17% Similarity=0.186 Sum_probs=237.8
Q ss_pred ccChHHHHHHHhhhhhhhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhH
Q 039800 55 TLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFA 133 (576)
Q Consensus 55 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~ 133 (576)
+-+.+....+.+|..+|+|++..|-.... +|- ...+..++++.++...++.++|...+.|+..+.-+-+++.+||.+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~--~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g 79 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAG--AGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKG 79 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHH
Confidence 45678888999999999999998876533 454 367778889999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc-ccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHH
Q 039800 134 AFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTA-KWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNM 212 (576)
Q Consensus 134 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 212 (576)
+++.+..|++.......++....++.+.+.++.... ++. .......+..++..+.+.|.|...|+++
T Consensus 80 ~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~------------~~~~~~~f~~i~~~iv~~g~~~v~~~n~ 147 (394)
T PF03222_consen 80 GIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLS------------PWLSSLLFTIIFGGIVYFGTKAVDRINR 147 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCc------------HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999988888888888888888888887754321 110 1145566677777788899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc-CCCCCCCC--CCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHH
Q 039800 213 ILTVLHILFIAFVILMGFWK-DPKNPSGF--FPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVII 289 (576)
Q Consensus 213 ~~~~~~l~~~~~~~i~~~~~-~~~~~~~~--~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~ 289 (576)
.+...+++.++.+.+.++.+ +.++.... .+..+...+.+++..+++|.-...+..+.+..++-+|+.+|++..+..+
T Consensus 148 ~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i 227 (394)
T PF03222_consen 148 VLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLI 227 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHH
Confidence 99999999998888888887 66665432 2356788889999999999999999999999987678899999999999
Q ss_pred HHHHHHHHHHHHHhcccCCcCC----CC---chHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 039800 290 VTVLYCLMAASMSMLMPYDMID----AE---APFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCV 359 (576)
Q Consensus 290 ~~i~y~~~~~~~~~~~~~~~~~----~~---~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 359 (576)
..++|++..+++.+..|.++.. ++ +++....++ ..++++...+..+...++..++..+...+..+.+..
T Consensus 228 ~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 303 (394)
T PF03222_consen 228 PLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALAN-VSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLAD 303 (394)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887642 22 355566665 677788999999999999999998888887776643
|
A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region. |
| >TIGR00814 stp serine transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-17 Score=166.90 Aligned_cols=283 Identities=14% Similarity=0.110 Sum_probs=219.1
Q ss_pred HHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH----h--hhcCcCCCchhHHHHHHhchhH
Q 039800 60 DLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTE----F--AVDMPVAGGAFSYLRVTFGEFA 133 (576)
Q Consensus 60 ~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~e----l--~~~~p~~Gg~y~~~~~~~g~~~ 133 (576)
..+...+|.++|+|++..|.. +|...+++++++++++++.++.++. . .+..| ..+.++++++.+||..
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~-----ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p-~~~i~~~~~~~fGk~~ 80 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQ-----AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNP-CEDITEVVEEHFGKNW 80 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHcCHHH
Confidence 345677788899999999875 3444577778777777776665555 4 44444 5689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 134 AFLTGSNLILEYVMSNAAVARGFASYFGTAIG----VPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 134 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
|.+.++.|++........+.....+.+.+++. .+.+. ..+....+++....++..|.|...|
T Consensus 81 G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~--------------~~i~~lilv~il~~iv~~G~~~i~r 146 (397)
T TIGR00814 81 GILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPL--------------RGLLSLALILILVAIMSFGEKLLFK 146 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH--------------HHHHHHHHHHHHHHHHHhcHHHHHH
Confidence 99999999999998877777666666555442 22111 1245666677778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CCCCCCCC--CCCchhHHHHHHHHHHHHHhhhhhHhhhh----hhhcCc---CCch
Q 039800 210 VNMILTVLHILFIAFVILMGFWK-DPKNPSGF--FPYGAKGVFNGAAMVYLSYIGYDAVSTMA----EEVKNP---VKDI 279 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~~--~~~g~~~~~~~~~~~~~~f~G~e~~~~~~----~E~k~p---~r~~ 279 (576)
++.++...+++.++.+.+....+ |.++.... ....+..++.+++..+|+|.|+|..+.++ +|.+|| +|+.
T Consensus 147 ~~~il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~ 226 (397)
T TIGR00814 147 IMGPLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKC 226 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHH
Confidence 99999999988888888777776 66665322 22346779999999999999999999998 666655 5778
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC----CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039800 280 PIGVSGSVIIVTVLYCLMAASMSMLMPYDMID----AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQAR 355 (576)
Q Consensus 280 p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 355 (576)
.|++..+..+..++|+...+++.+..++++.. ++.+....+.+ ....++...+..+...++..++..+..++...
T Consensus 227 ~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~-~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e 305 (397)
T TIGR00814 227 LRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLAN-HFNAAWISYAGPIVAIVAISKSFFGHYLGARE 305 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 89999999999999999999999998888752 33344555554 66778888888888888999999999998888
Q ss_pred HHHHHhhc
Q 039800 356 YMCVIGRS 363 (576)
Q Consensus 356 ~l~a~a~d 363 (576)
.+..+-++
T Consensus 306 ~l~~l~~~ 313 (397)
T TIGR00814 306 GLNGIVLN 313 (397)
T ss_pred HHHHHHHH
Confidence 88887744
|
The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli. |
| >KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-18 Score=172.34 Aligned_cols=367 Identities=16% Similarity=0.223 Sum_probs=285.8
Q ss_pred ccccChHHHHHHHh-hhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCc-CCCchhHHHHHHh
Q 039800 53 RKTLRWYDLVCFGI-GGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMP-VAGGAFSYLRVTF 129 (576)
Q Consensus 53 ~r~l~~~~~~~~~~-~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p-~~Gg~y~~~~~~~ 129 (576)
+-++|+|+-++.-. -++-|.-.|...+...++ +|.. .++...++..+...++++..-++++-. +.||.|..+++.+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgq-agi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQ-AGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeec-chhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 34699998876655 355688889888888777 7765 666677888899999999999999987 8899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 130 GEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 130 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
|+..|--.|..|.++....++.+..++++.+..++.... .+. +..++.+...+...+|..|+++..|
T Consensus 106 g~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s-~~~------------i~gi~~vt~~ill~i~~ag~~w~~k 172 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES-KEM------------IDGIGSVTVLILLAINVAGVEWEAK 172 (643)
T ss_pred cccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc-HHH------------hcchhHHHHHHHHHhhhccchhHHH
Confidence 999999999999999999999999999999999887542 222 1247777788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-C-CC-CC---------CCCCCC--chhHHHHHHHHHHHHHhhhhhHhhhhhhhcCc
Q 039800 210 VNMILTVLHILFIAFVILMGFWK-D-PK-NP---------SGFFPY--GAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNP 275 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~~i~~~~~-~-~~-~~---------~~~~~~--g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p 275 (576)
.|.++..+.++.+.-..+..+.. . .+ .+ ++++|. .-..++..+...+-+.+|.=+.++++++.|+|
T Consensus 173 ~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~P 252 (643)
T KOG2083|consen 173 LQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDP 252 (643)
T ss_pred HHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCc
Confidence 99999988888877666665554 1 00 00 111211 01245666666778889999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC-----CCc----hHHHhhccCCCC-hhHHHHHHHHHHHHHHHHH
Q 039800 276 VKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMID-----AEA----PFSGAFSGKSDG-WKWVSNVIGVGASFGILTS 345 (576)
Q Consensus 276 ~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~-----~~~----p~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 345 (576)
++++|++-..+......+|..+..-.....-.+... .+. .+.+-++ ... .......+..+...+.+.+
T Consensus 253 q~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~q--v~smvS~~~Pl~~AGi~~a~LSs 330 (643)
T KOG2083|consen 253 QKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQ--VMSMVSTFGPLITAGILAAELSS 330 (643)
T ss_pred hhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHH--HHHhHhhcccchhhHHHHHHHHH
Confidence 999999999999999999987776544433222211 011 1222222 111 1223445667777788888
Q ss_pred HHHHHhhHHHHHHHHhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 039800 346 LLVAMLGQARYMCVIGRSSVVP--AWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVI 423 (576)
Q Consensus 346 ~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 423 (576)
..+.+.++.++++++++|...| .+++|-.++++.|.++...+...+..+..++..+.+..+.+...+.+|.....+++
T Consensus 331 alsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f 410 (643)
T KOG2083|consen 331 ALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCF 410 (643)
T ss_pred HHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhh
Confidence 8899999999999999999999 67899999999999999999999988888899999999999999999999999988
Q ss_pred HHhhccCCCCCC
Q 039800 424 YRRYVNLGTTNP 435 (576)
Q Consensus 424 ~~r~~~~~~~~~ 435 (576)
.-+...++..||
T Consensus 411 ~aSl~~s~~wRp 422 (643)
T KOG2083|consen 411 HASLAISEGWRP 422 (643)
T ss_pred hhhhccccccCc
Confidence 777776665554
|
|
| >PRK10483 tryptophan permease; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-14 Score=147.83 Aligned_cols=323 Identities=14% Similarity=0.089 Sum_probs=238.0
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhc
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFG 130 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g 130 (576)
.|++.+.+....+..|..||.|.+..|-.... .|- .+....+++++.+...++.+.|...++|+.-+...-+++.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~--~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSG--AWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence 45678999999999999999999988765533 453 367778889999999999999999999988889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 131 EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 131 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
|.+..+.+..+.+-......++....++.+++.++... +. .+ ...-.+++..++..+.+.|.|...|+
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~--~~-----i~-----~~~~~llF~~~~~~iv~~gt~~vd~~ 152 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMS--LN-----VP-----ARAAGFGFALLVAFVVWLSTKAVSRM 152 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcC--CC-----Cc-----HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99887777766665556666667777777777664310 00 00 12567778888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-CCCCCCCC---CCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHH
Q 039800 211 NMILTVLHILFIAFVILMGFWK-DPKNPSGF---FPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGS 286 (576)
Q Consensus 211 ~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~~---~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~ 286 (576)
++++...+++.++..+...+.+ +.++.... .+..+...+.+++..+++|.=...++.+.+..++-.|+++|++..+
T Consensus 153 n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iG 232 (414)
T PRK10483 153 TAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYG 232 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHH
Confidence 9999999999987777766665 44333211 1122445778899999999888999999888876556899999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcCC----C--C-chHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 039800 287 VIIVTVLYCLMAASMSMLMPYDMID----A--E-APFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCV 359 (576)
Q Consensus 287 ~~~~~i~y~~~~~~~~~~~~~~~~~----~--~-~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 359 (576)
..+..++|++...++.+..|.++.. . + +.+.+.+++ ..++++...+..+...++..+|..+...+....+..
T Consensus 233 s~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~-~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D 311 (414)
T PRK10483 233 TLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSG-VLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLAD 311 (414)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999977641 1 2 223455554 667778888888888888888888777776666655
Q ss_pred HhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhc
Q 039800 360 IGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTD 399 (576)
Q Consensus 360 ~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~ 399 (576)
+-+-+ + +.+-.....+++.+...++.+...
T Consensus 312 ~~k~~---------~-~~~~r~~~~~ltflPPl~~al~~P 341 (414)
T PRK10483 312 LFGFD---------D-SAMGRFKTALLTFLPPVVGGLLFP 341 (414)
T ss_pred HhCCC---------C-ccccceeeehhhHhhHHHHHHHhH
Confidence 43221 1 111112234456666666666643
|
|
| >PRK15132 tyrosine transporter TyrP; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-14 Score=146.60 Aligned_cols=343 Identities=15% Similarity=0.154 Sum_probs=247.3
Q ss_pred ChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHH
Q 039800 57 RWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAF 135 (576)
Q Consensus 57 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 135 (576)
+.....++..|..+|.|++..|-.... +|.. .....++++.++...++.+.|...+.|...+..+-+++.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~--~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG--VGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 566778889999999999988876533 4543 5666777888888899999998888887778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----CCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHH
Q 039800 136 LTGSNLILEYVMSNAAVARGFASYFGTAIGV----PTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211 (576)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (576)
+....|++.......++....++.+.+.++. +.+. ....+.+..+...+.+.|.|...|++
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~---------------~~~~l~F~~~~~~iv~~g~~~v~~~n 146 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSP---------------TAGVLLFTLVAGGVVCVGTSSVDLFN 146 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCCh---------------HHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999888888888888866666655432 1111 13455666666668888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-CCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHH
Q 039800 212 MILTVLHILFIAFVILMGFWK-DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIV 290 (576)
Q Consensus 212 ~~~~~~~l~~~~~~~i~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~ 290 (576)
+++...+++.++.+......+ +.++.... +.+..-.+.+++..+++|.=...++.+....++-+|+.+|++..+..+.
T Consensus 147 ~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~ 225 (403)
T PRK15132 147 RFLFSAKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIP 225 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 999999998887777766666 55554321 1112237888999999999999999999998877789999999999999
Q ss_pred HHHHHHHHHHHHhcccCCcCC----CCc---hHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhc
Q 039800 291 TVLYCLMAASMSMLMPYDMID----AEA---PFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRS 363 (576)
Q Consensus 291 ~i~y~~~~~~~~~~~~~~~~~----~~~---p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 363 (576)
.++|++...++.+..|.++.. ++. +..+.+++ ..+.++...+..+...++..+|..+...+..+.+..+-+.
T Consensus 226 li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~ 304 (403)
T PRK15132 226 LVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALRE-VVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQR 304 (403)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHH-HccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999987642 222 45566664 6777899999999999999999888888887777665433
Q ss_pred CCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhh--cHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Q 039800 364 SVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFT--DLTVLLNLVSIG-TLFVFYMVANAVIYRRYV 428 (576)
Q Consensus 364 g~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~--~~~~l~~~~~~~-~~~~~~~~~~~~~~~r~~ 428 (576)
+. + +.+ ......++.+...+++... .|....+.+... ..+..+++.....+.|++
T Consensus 305 ~~--------~-~~~-r~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~ 362 (403)
T PRK15132 305 RN--------T-VGG-RLQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQ 362 (403)
T ss_pred Cc--------c-ccC-CchhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11 1 111 1223445555555555552 344444444432 222334444444444443
|
|
| >PRK09664 tryptophan permease TnaB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-14 Score=145.29 Aligned_cols=323 Identities=12% Similarity=0.097 Sum_probs=229.5
Q ss_pred ChHHHHHHHhhhhhhhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHH
Q 039800 57 RWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAF 135 (576)
Q Consensus 57 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 135 (576)
+......+..|..||+|.+..|-.... .|- ......+++++.+...++.+.|...++|..-+...-+++.+||.+..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~--~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAG--AWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 566688899999999999988765533 453 36777888999999999999999999998888999999999998777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 039800 136 LTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILT 215 (576)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 215 (576)
+.+..+.+-......++....++.+++.++... .... + ....++.+.+++..+.+.|.|...|.++++.
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~~i-----~-----~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~ 156 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNL-GYHA-----N-----PRIVGICTAIFVASVLWISSLAASRITSLFL 156 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cCCC-----c-----HHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 777766655555666667777777777664310 0000 0 1145678888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc-CCCCCCCCC-CC---c-hhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHH
Q 039800 216 VLHILFIAFVILMGFWK-DPKNPSGFF-PY---G-AKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVII 289 (576)
Q Consensus 216 ~~~l~~~~~~~i~~~~~-~~~~~~~~~-~~---g-~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~ 289 (576)
..+++.++..+.....+ +.++..... .. . +..++.+++..+++|.=...++.+....++-.|+.+|+++.+..+
T Consensus 157 ~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~I 236 (415)
T PRK09664 157 GLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLL 236 (415)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHH
Confidence 99998887777776666 554443211 11 1 334777888889999888888888888876667899999999999
Q ss_pred HHHHHHHHHHHHHhcccCCcCC----CC---chHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 039800 290 VTVLYCLMAASMSMLMPYDMID----AE---APFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGR 362 (576)
Q Consensus 290 ~~i~y~~~~~~~~~~~~~~~~~----~~---~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 362 (576)
..++|++...++.+..|+++.. ++ +.+.....+ ...+++...+..+...++..+|..+...+....+..+-+
T Consensus 237 pLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~-~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~ 315 (415)
T PRK09664 237 ALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLG-TKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFK 315 (415)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHh-hccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999988877642 21 122333332 455578888888888888888877766665555544322
Q ss_pred cCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHH
Q 039800 363 SSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVL 403 (576)
Q Consensus 363 dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l 403 (576)
. .+ +.+-......++.+.-.++.++.....+
T Consensus 316 ~---------~~-~~~~r~~~~~ltflPPl~~al~~P~gFl 346 (415)
T PRK09664 316 I---------DN-SHGGRFKTVLLTFLPPALLYLIFPNGFI 346 (415)
T ss_pred C---------CC-ccccceeeehhhHhhhHHHHHHhhHHHH
Confidence 1 11 1111222344566666666666443333
|
|
| >PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-14 Score=144.50 Aligned_cols=284 Identities=16% Similarity=0.219 Sum_probs=235.8
Q ss_pred ccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHH
Q 039800 55 TLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAA 134 (576)
Q Consensus 55 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g 134 (576)
|+|.+|...+.+..++|++....|+..... +| ++|++.+++++..+..++.+..+.+++|+. ...++.++.+||..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~-~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQ-AG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK-TLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHHH
Confidence 478999999999999999999999988877 56 889999999999999999999999999986 499999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 039800 135 FLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMIL 214 (576)
Q Consensus 135 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (576)
...+..+.+.+....+.....+++.++..+-++.+.| .+...++..+.+....|.+...|...+.
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP~~---------------~i~~~~ll~~~y~a~~G~e~i~R~~~~~ 142 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLLPETPIW---------------VIILLFLLVAAYAARKGIEVIARVAEIL 142 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCHH---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999998776655544 5667777888899999999999988888
Q ss_pred HHHHHHHHHHHHHHhhcc-CCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHH
Q 039800 215 TVLHILFIAFVILMGFWK-DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVL 293 (576)
Q Consensus 215 ~~~~l~~~~~~~i~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~ 293 (576)
....++.++.+....... |+++..|..+.|+..++.+.....+.|.|.|....+...+||++ +..|....+...++++
T Consensus 143 ~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~~~~~~~~ 221 (320)
T PF03845_consen 143 FPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIAILISGLF 221 (320)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHH
Confidence 888877776666665555 88889999999999999999999999999999999999999975 5789999999999999
Q ss_pred HHHHHHHHHhcccCCcCCC-CchHHHhhccCCCChh-H---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 039800 294 YCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWK-W---VSNVIGVGASFGILTSLLVAMLGQARYMCV 359 (576)
Q Consensus 294 y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~g~~-~---~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 359 (576)
+.+..+......+++..+. .-|..+..+ ....+ . ...++...-+.+.+.....++++.++.+-.
T Consensus 222 ~~~~~~~~i~vfG~~~~~~~~~P~~~~~~--~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 222 LLFIIFITIGVFGPELAKKLTYPVLELAR--SIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQ 290 (320)
T ss_pred HHHHHHHHHHhcCHHHHhceecHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888766543 567777777 33322 3 334444445555555666666777766543
|
A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane |
| >PRK13629 threonine/serine transporter TdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-13 Score=140.00 Aligned_cols=282 Identities=15% Similarity=0.098 Sum_probs=217.1
Q ss_pred HHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcC-cCCCchhHHHHHHhchhHHHHHHHH
Q 039800 63 CFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDM-PVAGGAFSYLRVTFGEFAAFLTGSN 140 (576)
Q Consensus 63 ~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~-p~~Gg~y~~~~~~~g~~~g~~~g~~ 140 (576)
...+|..+|+|+++.|-.... +|.. ..+..++++.++...+..+.|..... |...+.-+-+++.+|+.+|.+.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~--~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGF--GGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 666788899999998876532 4544 66677888888999999999999998 5555788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----CC-CCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 039800 141 LILEYVMSNAAVARGFASYFGTAI----GV-PTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILT 215 (576)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 215 (576)
|++........+.....+.+.+.+ +. +.+ ..+.+.+++.+...+...|.|...|++.++.
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~---------------r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv 168 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQLGFAPLN---------------RGFVALFLLLLMAFVIWFGKDLMVKVMSYLV 168 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCcc---------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 998888777777766666665542 21 111 1267788888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc-CCCCCCCCC----CC----c-hhHHHHHHHHHHHHHhhhhhHhhhhhh----hc------Cc
Q 039800 216 VLHILFIAFVILMGFWK-DPKNPSGFF----PY----G-AKGVFNGAAMVYLSYIGYDAVSTMAEE----VK------NP 275 (576)
Q Consensus 216 ~~~l~~~~~~~i~~~~~-~~~~~~~~~----~~----g-~~~~~~~~~~~~~~f~G~e~~~~~~~E----~k------~p 275 (576)
..+++.++.+.+..+.+ +.+++.... +. + ....+.+++..+++|.=...++.++.. .+ +.
T Consensus 169 ~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a 248 (443)
T PRK13629 169 WPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFT 248 (443)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchH
Confidence 99999999988888887 555543211 11 1 124778889999999877777776655 32 22
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcC----CCCch-HHHhhccCCCCh---------hHHHHHHHHHHHHH
Q 039800 276 VKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMI----DAEAP-FSGAFSGKSDGW---------KWVSNVIGVGASFG 341 (576)
Q Consensus 276 ~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~----~~~~p-~~~~~~~~~~g~---------~~~~~~~~~~~~~~ 341 (576)
+|+..|++..+.++..++|++..+.+.+..|++++ +++.+ +..... ..++ ++...+..+...++
T Consensus 249 ~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~--~~~~~~~~~~~~~~~i~~~~~ifa~~A 326 (443)
T PRK13629 249 ERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLAN--HFASMTGTKSTFAITLEYAASIIALVA 326 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHH--HhhhcccccccchhHHHHHHHHHHHHH
Confidence 47889999999999999999999999999998885 34555 333333 4443 67888888888899
Q ss_pred HHHHHHHHHhhHHHHHHHHhhc
Q 039800 342 ILTSLLVAMLGQARYMCVIGRS 363 (576)
Q Consensus 342 ~~~~~~~~~~~~sR~l~a~a~d 363 (576)
..++..+..++..-.+-.+.++
T Consensus 327 I~TSFlGv~LGl~E~l~gl~~~ 348 (443)
T PRK13629 327 IFKSFFGHYLGTLEGLNGLILK 348 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888754
|
|
| >COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-12 Score=134.78 Aligned_cols=285 Identities=16% Similarity=0.121 Sum_probs=220.9
Q ss_pred CCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCC-chhHHHHHH
Q 039800 51 DMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAG-GAFSYLRVT 128 (576)
Q Consensus 51 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~G-g~y~~~~~~ 128 (576)
..+++-+..+.+...++..+|+|++..|-.. ..+|-. .+...++++.++....+.+.|...+.|+.. +.++-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~--~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAF--GGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHh--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence 3456678889999999999999999887654 225544 666788899999999999999999999884 899999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
+||.++++.+..+.+.....+.++....++.+...++....... ....+..+++...+..+.+.+.+...
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~----------~~r~~~~lif~~~~~~l~~~~~~~~l 151 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP----------LPRKLGSLIFALVLAFLSWLGTLAVL 151 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC----------cchHHHHHHHHHHHHHHHHhchhHHH
Confidence 99999999999999988888888888888888877653111100 00125566666777778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCC--CC-CCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCc-hhhHH
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK-DPKNPSG--FF-PYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKD-IPIGV 283 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~--~~-~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~-~p~ai 283 (576)
|.+..+...+++.++++......+ +.++... .. +..+..++.+++..+++|.+......+..|+|+++++ ++|++
T Consensus 152 k~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~ 231 (415)
T COG0814 152 KITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAI 231 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHH
Confidence 999999999999998888877776 4443322 12 3557789999999999999999999999999988777 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcC-------CCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHH
Q 039800 284 SGSVIIVTVLYCLMAASMSMLMPYDMI-------DAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLV 348 (576)
Q Consensus 284 ~~~~~~~~i~y~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 348 (576)
..+..+..++|+...+......+.+.. +++.....+..+ ....+.......+....+..++..+
T Consensus 232 ~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~-~~~~~~~~~~~~~f~~~Ai~tSFlg 302 (415)
T COG0814 232 LIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAG-VINSPILSIALNIFALFAIATSFLG 302 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHH-hhcchHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998888886632 223344555443 4444556666666666666555433
|
|
| >PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-10 Score=114.31 Aligned_cols=292 Identities=18% Similarity=0.263 Sum_probs=195.2
Q ss_pred CCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCc-------CCCchh
Q 039800 50 SDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMP-------VAGGAF 122 (576)
Q Consensus 50 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p-------~~Gg~y 122 (576)
++-+++++.++.++.+++..+|.|-.......+.. +||++++...+.+++.+.+.++=.-|+.++. ..||..
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~-GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~ 91 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAI-GGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPM 91 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHH
Confidence 33455799999999999999999999988888876 9998544445555666555555444555443 347899
Q ss_pred HHHHHHhch-hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHH
Q 039800 123 SYLRVTFGE-FAAFLTGSNLILEYVMS-NAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVI 200 (576)
Q Consensus 123 ~~~~~~~g~-~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (576)
.|.++.+|. +++.+.+.....++... ......+.++.++..++.++ ...++++.+++.++.
T Consensus 92 yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~-----------------~~~gi~l~~l~~~vi 154 (416)
T PF01235_consen 92 YYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFGIPP-----------------WITGIILAILVALVI 154 (416)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccccH-----------------HHHHHHHHHHHHHHH
Confidence 999999995 45555555544444333 45555555555555444321 256777778888888
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCC---------CCCCCCch-hHHHH---------HHHHHHHHH--
Q 039800 201 CYSTRDSSVVNMILTVLHILFIAFVILMGFWKDPKNP---------SGFFPYGA-KGVFN---------GAAMVYLSY-- 259 (576)
Q Consensus 201 ~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~---------~~~~~~g~-~~~~~---------~~~~~~~~f-- 259 (576)
.-|+|...++...+..+..+..++..+..+..+.++. ..|.+... .|+.- ++.=.+|+-
T Consensus 155 ~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEA 234 (416)
T PF01235_consen 155 FGGIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSNEA 234 (416)
T ss_pred HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccCCC
Confidence 9999999999999998888777666555555443332 22333321 11111 111123433
Q ss_pred -hhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcC---CCCchHHHhhccCCCChhHHHHHHH
Q 039800 260 -IGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMI---DAEAPFSGAFSGKSDGWKWVSNVIG 335 (576)
Q Consensus 260 -~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~g~~~~~~~~~ 335 (576)
.|....+|.+.|+++|.|+--.+++-..+-+.++..+..+++.....+... +...-...++++ ..| ++...++.
T Consensus 235 G~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~-~~g-~~g~~~v~ 312 (416)
T PF01235_consen 235 GLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFST-VLG-SWGPYFVA 312 (416)
T ss_pred CCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHH-hhh-hhHHHHHH
Confidence 466777788889999998877777777776777777777776664433222 112224556774 566 78899999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHh
Q 039800 336 VGASFGILTSLLVAMLGQARYMCVIG 361 (576)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~sR~l~a~a 361 (576)
++.++..++++.++.+..-|.+.-+-
T Consensus 313 i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 313 IALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999988887765544
|
One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane |
| >TIGR00835 agcS amino acid carrier protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-09 Score=109.39 Aligned_cols=285 Identities=16% Similarity=0.216 Sum_probs=179.3
Q ss_pred cccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHH-HHHHHHHHHHHHHHHHHHHHhhhcCc---C----CCchhHHH
Q 039800 54 KTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAI-VISYAIAGLCALLSAFCYTEFAVDMP---V----AGGAFSYL 125 (576)
Q Consensus 54 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~-~~~~li~~l~~~~~a~~~~el~~~~p---~----~Gg~y~~~ 125 (576)
++++.++.++++.+..+|.|-....+..+.. +||++ +|.|+ ++++.....+.-.-++.++- + .||...|.
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~-GGpGAvFWMWI-~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAI-GGPGAVFWMWV-TAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYI 122 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHh-cCCCchHHHHH-HHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence 4599999999999999999866566666655 89985 44444 44444444444333443333 2 24555888
Q ss_pred HHHhc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhc
Q 039800 126 RVTFG-EFAAFLTGSNLILEY-VMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYS 203 (576)
Q Consensus 126 ~~~~g-~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 203 (576)
++.++ |++|.+.+.. .+.+ ...+.....+.++.++..++. +. ++.++++.++..++..-|
T Consensus 123 ~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~~--~~---------------~v~~i~l~~l~~~vi~GG 184 (425)
T TIGR00835 123 KKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFNV--PK---------------LVTGIVLTVLTALIIFGG 184 (425)
T ss_pred HHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcCC--cH---------------HHHHHHHHHHHHHHHhcC
Confidence 88776 7778877766 4444 445666677777777644422 22 256777777777777779
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCC---------CCCCCCchhHHHH----------HHHHHHHHH---hh
Q 039800 204 TRDSSVVNMILTVLHILFIAFVILMGFWKDPKNP---------SGFFPYGAKGVFN----------GAAMVYLSY---IG 261 (576)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~---------~~~~~~g~~~~~~----------~~~~~~~~f---~G 261 (576)
+|...++...+..+..+..+...+.....+.++. ..|.+....|-.. ++.=.+|+- .|
T Consensus 185 ik~Ia~v~~~lvP~m~~~Y~~~~l~ii~~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~G 264 (425)
T TIGR00835 185 LKRIAKISSVVVPFMALLYVIMALYIIIMNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGMG 264 (425)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhccccccC
Confidence 9999999999998887776544443333233332 1233322111111 122233444 46
Q ss_pred hhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCc--CCCCchH-HHhhccCCCChhHHHHHHHHHH
Q 039800 262 YDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDM--IDAEAPF-SGAFSGKSDGWKWVSNVIGVGA 338 (576)
Q Consensus 262 ~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~--~~~~~p~-~~~~~~~~~g~~~~~~~~~~~~ 338 (576)
....+|.+.|+++|.|+--.++.-..+-+.++..+..+++.....+++ -.++..+ .++++. ..| +++..++.++.
T Consensus 265 sa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~-~~g-~~g~~~v~i~~ 342 (425)
T TIGR00835 265 SAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSY-GLG-SFGAVFVAVAL 342 (425)
T ss_pred cHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHH-Hhh-hhHHHHHHHHH
Confidence 667777888899998876666666666566667677766555443331 1112233 345663 454 67889999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 039800 339 SFGILTSLLVAMLGQARYMCVI 360 (576)
Q Consensus 339 ~~~~~~~~~~~~~~~sR~l~a~ 360 (576)
++..++++.++.+..-+.+.-+
T Consensus 343 ~lFaftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 343 FLFAFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988877776554
|
Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+. |
| >COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-08 Score=100.53 Aligned_cols=290 Identities=19% Similarity=0.269 Sum_probs=203.1
Q ss_pred CCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCc-------CCCchh
Q 039800 51 DMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMP-------VAGGAF 122 (576)
Q Consensus 51 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p-------~~Gg~y 122 (576)
+-+++++.++.++.+.++.+|+|-.......+.. +||+ ..|.|+ .+++.+.+.+.=+-|+..+. ..||+-
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~-GGPGAvFWMWi-~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~ 135 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIAL-GGPGAVFWMWI-VALFGMATKFAESTLAQKYRVKDKDGEYRGGPA 135 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHc-CCCccHHHHHH-HHHHHHHHHHHHHHHHhheeEeCCCCCCcCChH
Confidence 3456799999999999999999999988888876 9998 455554 45555555555555666554 347999
Q ss_pred HHHHHHhc-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHH
Q 039800 123 SYLRVTFG-EFAAFLTGSNLILEYV-MSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVI 200 (576)
Q Consensus 123 ~~~~~~~g-~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (576)
+|.++.+| |.+|.+.+.....++- ..+.....+.++.+++.++.+. ...++++.++..++.
T Consensus 136 yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~~~-----------------~~~gi~la~l~~~VI 198 (452)
T COG1115 136 YYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGIPP-----------------LVTGIVLALLVALVI 198 (452)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCCcH-----------------HHHHHHHHHHHHHHH
Confidence 99999999 6778888877777776 5888888888898888776542 267888888888899
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCC---------CCCCCC----chh------HHHHHHHHHHHHH--
Q 039800 201 CYSTRDSSVVNMILTVLHILFIAFVILMGFWKDPKNP---------SGFFPY----GAK------GVFNGAAMVYLSY-- 259 (576)
Q Consensus 201 ~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~---------~~~~~~----g~~------~~~~~~~~~~~~f-- 259 (576)
.-|+|..+++........-+.-++..+..+..+.++. ..|.+. |.. .+..++.=.+|+-
T Consensus 199 ~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEA 278 (452)
T COG1115 199 FGGIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEA 278 (452)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccc
Confidence 9999999999998888776666554444444322221 122222 121 1222232334554
Q ss_pred -hhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCC--CCchHH-HhhccCCCChhHHHHHHH
Q 039800 260 -IGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMID--AEAPFS-GAFSGKSDGWKWVSNVIG 335 (576)
Q Consensus 260 -~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~--~~~p~~-~~~~~~~~g~~~~~~~~~ 335 (576)
.|....++.+.++++|.|+--..+....+-+.++.....+.+.....++..+ +...+. .+++. .+| +++..++.
T Consensus 279 GmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~-~~g-~~G~~fv~ 356 (452)
T COG1115 279 GMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSS-HLG-SWGSYFVA 356 (452)
T ss_pred cCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHH-hcC-ccHHHHHH
Confidence 3556667778888999887666666555556677777777766655444333 333443 45664 566 68999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHh
Q 039800 336 VGASFGILTSLLVAMLGQARYMCVIG 361 (576)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~sR~l~a~a 361 (576)
+.+++-.+++..++.+..-|.+.-+.
T Consensus 357 i~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 357 IALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888877765544
|
|
| >KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-08 Score=101.47 Aligned_cols=351 Identities=12% Similarity=0.131 Sum_probs=198.8
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH--HHHHHHHHHHHHHH---HHHHHHHhhhcCcCCC--------
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA--IVISYAIAGLCALL---SAFCYTEFAVDMPVAG-------- 119 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~--~~~~~li~~l~~~~---~a~~~~el~~~~p~~G-------- 119 (576)
++..+..+.+.--+-.++|+|++..|... .. +|.. .+...+++.+...+ ..-+--++.++.-++-
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AF-k~-sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAF-KN-SGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHH-Hh-cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 34488888888888899999998776544 44 6653 23333444443333 3444556666642211
Q ss_pred ----chhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CcccccccCCCCCCCchhhHHHHHHHH
Q 039800 120 ----GAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVP-TAKWRLKVDGLPDGFNEIDVLAVAVVL 194 (576)
Q Consensus 120 ----g~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (576)
+.+.| .|.+||...+++-....+.+...+..+....++-+.++.+.. ...+.. .+...+.+.
T Consensus 122 ~a~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~------------~~~i~~~~~ 188 (449)
T KOG1304|consen 122 SAMEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSV------------RLYILIQLP 188 (449)
T ss_pred HHHcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccH------------HHHHHHHHH
Confidence 12225 678899999999999999999999999999999998888731 122211 122222222
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc--C---CCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhh
Q 039800 195 VITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK--D---PKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMA 269 (576)
Q Consensus 195 ~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~--~---~~~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~ 269 (576)
....+| -+|..+++.-+.....+..++.+.+..... + .++...+. ++.++...+..++|+|-|...+-.+=
T Consensus 189 ~~lll~--~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~--~~~~~~lf~GtaifafEGig~VLPlE 264 (449)
T KOG1304|consen 189 PLLLLN--LIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVT--GWSGLPLFFGTAIFAFEGIGMVLPLE 264 (449)
T ss_pred HHHHHH--HHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccc--chhhhHHHHHHHHHHhccceEEEehh
Confidence 222333 234444444444444444433333332222 2 22222222 36778888889999999999999999
Q ss_pred hhhcCcCCchh---hHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHH
Q 039800 270 EEVKNPVKDIP---IGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSL 346 (576)
Q Consensus 270 ~E~k~p~r~~p---~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 346 (576)
+++|+|+ +.| +.+-.++.++.++|+..-+.-....+.|..++-. - .+...++...+-+...++.+-+.
T Consensus 265 n~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sIT------L--NLP~~~l~~~Vkl~~ai~I~ls~ 335 (449)
T KOG1304|consen 265 NSMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSIT------L--NLPQEILSQTVKLLLAIAIFLTY 335 (449)
T ss_pred hcccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEE------e--cCCccHHHHHHHHHHHHHHHHcC
Confidence 9999996 678 9999999999999998887755555544332211 1 23334555555566666666555
Q ss_pred HHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHH-hhcHHHHHHHHHHH--HHHHHHHHHHHHH
Q 039800 347 LVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIAL-FTDLTVLLNLVSIG--TLFVFYMVANAVI 423 (576)
Q Consensus 347 ~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~~~~~~~~~ 423 (576)
--.++-.-++++.- +.++++ .++++=.++.-=.+..+++..++. +.+++.++++.... ..+.++++.+--+
T Consensus 336 pLQ~yv~~eIi~~~-----i~~k~~-~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel 409 (449)
T KOG1304|consen 336 PLQFYVPIEIIEPG-----IRKKFS-ENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIEL 409 (449)
T ss_pred chhhhhhHHHHHHh-----HHHhcC-cchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHH
Confidence 55566666766653 222222 110000111111222222222222 35677777776543 3445555555555
Q ss_pred HHhhccCCCCCCCc
Q 039800 424 YRRYVNLGTTNPQP 437 (576)
Q Consensus 424 ~~r~~~~~~~~~~~ 437 (576)
...+...+.+..|+
T Consensus 410 ~~~~~~~~~~~~~~ 423 (449)
T KOG1304|consen 410 ITFYPEGKGRFMWK 423 (449)
T ss_pred HHhcccccCceehH
Confidence 55544443333343
|
|
| >KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-08 Score=102.22 Aligned_cols=280 Identities=16% Similarity=0.170 Sum_probs=187.3
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHH-HHHHHHHHHHHHHHHHHHHHhhhcCcCCCc-----hhHHH
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAI-VISYAIAGLCALLSAFCYTEFAVDMPVAGG-----AFSYL 125 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~-~~~~li~~l~~~~~a~~~~el~~~~p~~Gg-----~y~~~ 125 (576)
.+|+-++++..+-.++.++|.|+...| ..... .|... +...++.+++.+.++..+.+.-...|.-.| .-+-+
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP-~A~~~-lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLP-YALAQ-LGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhH-HHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 456799999999999999999999877 44444 67653 677788889999999889999888887777 77778
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCch-hhHHHHHHHHHHHHHHHhcc
Q 039800 126 RVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNE-IDVLAVAVVLVITFVICYST 204 (576)
Q Consensus 126 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~ 204 (576)
+++||+..-.++++...+.....+..+....++.+..+++....+-. ..+ .+. ..+.+.+...... +...
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~----~l~--~~~f~iif~~i~~~~s~---lp~~ 182 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN----SLD--KQYFIIIFGLIVLPLSQ---LPNF 182 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----ccc--ceehhhhHHHHHHHHHH---CCCc
Confidence 89999877667888777777777788888888888877654211110 000 000 1122222222222 3333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccC--CCCC-CCCCCCchhHH-HHHHHHHHHHHhhhhhHhhhhhhhcCcCCchh
Q 039800 205 RDSSVVNMILTVLHILFIAFVILMGFWKD--PKNP-SGFFPYGAKGV-FNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIP 280 (576)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~--~~~~-~~~~~~g~~~~-~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p 280 (576)
...+..........+......+..+..++ ..+. .+....+..+. +.++....|+|.|.......-..+|+|++ +.
T Consensus 183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~ 261 (437)
T KOG1303|consen 183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FK 261 (437)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchh-hh
Confidence 44444445555555555555566666652 1111 12222222222 77888889999999999999999999987 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 281 IGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSD-GWKWVSNVIGVGASFGILTSLLVAML 351 (576)
Q Consensus 281 ~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
|+.+.+...++.+|+...+.-....+.+..++ ... .+ .+.|.....++.+.+..+++..-+..
T Consensus 262 ~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~------il~--s~~~p~~~~~~ani~i~~h~i~s~~i~a~ 325 (437)
T KOG1303|consen 262 KALLISYIIVTFLYFPVAIIGYWAFGDSVPDN------ILL--SLQPPTWLIALANILIVLHLIGSYQIYAQ 325 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhccccchh------hhh--cccCchhHHHHHHHHHHHHHhhhhhhhhc
Confidence 99999999999999998887666555432211 222 33 35677788888888887776544333
|
|
| >PTZ00206 amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-07 Score=99.51 Aligned_cols=243 Identities=11% Similarity=0.088 Sum_probs=145.0
Q ss_pred ChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHH
Q 039800 57 RWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAF 135 (576)
Q Consensus 57 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 135 (576)
|..+..+-.+..++|+|++..|... .. +|-. .++..++.++++......+.+.+.+ ++.-...+-++..+||..++
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~Af-~~-~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSAA-NS-SGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHH-HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHHH
Confidence 4466667777788999999876654 33 5643 4455566666666666666666665 33345666677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-cccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 039800 136 LTGSNLILEYVMSNAAVARGFASYFGTAIGVPT-AKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMIL 214 (576)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (576)
++....++.....+.++....++.+...+.... ..+. .....+ ......+.+.+..-+...+.++..+.+..+.
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~---~~~~~~--r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~ 212 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFL---KQKSGN--RLLTSLMWLCFMLPLVIPRHIDSLRYVSTIA 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchh---hhccCc--EEeeeehhhhHhhhcccccchHHHHHHHHHH
Confidence 999988888888888888888888887764321 1110 000000 0001111111111222234444444444333
Q ss_pred HHHHHHHHHHHHHHhhcc-CCCCCCC----CCC-------CchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcC-Cchhh
Q 039800 215 TVLHILFIAFVILMGFWK-DPKNPSG----FFP-------YGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPV-KDIPI 281 (576)
Q Consensus 215 ~~~~l~~~~~~~i~~~~~-~~~~~~~----~~~-------~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~-r~~p~ 281 (576)
....+...+..++..... .+++..+ ..+ +.....+.++....|+|.+.......-+|+|||+ |+..+
T Consensus 213 ~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~ 292 (467)
T PTZ00206 213 VSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVL 292 (467)
T ss_pred HHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHH
Confidence 322222222222222222 1111110 000 0113467788899999999999999999999863 67888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC
Q 039800 282 GVSGSVIIVTVLYCLMAASMSMLMPY 307 (576)
Q Consensus 282 ai~~~~~~~~i~y~~~~~~~~~~~~~ 307 (576)
.+..++..+.++|.+..+.-....+.
T Consensus 293 v~~~s~~i~~~lY~~~G~~GYl~fG~ 318 (467)
T PTZ00206 293 ASTIAMGMCFTMYVLTAFFGYMDFGR 318 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 99999999999999988876665553
|
|
| >PLN03074 auxin influx permease; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-07 Score=100.17 Aligned_cols=234 Identities=10% Similarity=0.036 Sum_probs=126.2
Q ss_pred ccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHH----HhhhcCcCCCchh-----HH
Q 039800 55 TLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYT----EFAVDMPVAGGAF-----SY 124 (576)
Q Consensus 55 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~----el~~~~p~~Gg~y-----~~ 124 (576)
.-+..+...-.+...+|.|++..|... .. +|-. .++..++.++++...+..+. |...+.|+.+-.| +|
T Consensus 45 ~~s~~~~~~~l~~~~vG~GILaLP~Af-~~-~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 45 GGSVYDAWFSCASNQVAQVLLTLPYSF-SQ-LGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred CchHHHHHHHHHHHHHhHHHHhHHHHH-HH-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 455566666678888999999876654 33 6654 55566666766666666544 5666676644222 23
Q ss_pred H---HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCcccccccCCCCCCCchhhHHHHHHHHHHHHHH
Q 039800 125 L---RVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIG-VPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVI 200 (576)
Q Consensus 125 ~---~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (576)
. ++.+||.++.+......+.....+..+....++.+..+-. .+...| ..+.+++.+.+..
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~-------------~~i~~~v~~~~~~--- 186 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTW-------------TYIFGACCATTVF--- 186 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeE-------------EeehHHHHHHHHH---
Confidence 3 3467888777665433333333333333332322222211 111111 1122222222222
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCch
Q 039800 201 CYSTRDSSVVNMILTVLHILFIAFVILMGFWK-DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDI 279 (576)
Q Consensus 201 ~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~ 279 (576)
....|..+.+..+.....+.....+.+..... +......-.+.++..++.++...+|+|.|.-....+-.|+|||+ +.
T Consensus 187 i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~F 265 (473)
T PLN03074 187 IPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KF 265 (473)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChh-cc
Confidence 22334444433333332232222222222222 21111111223455677777778999999999999999999995 68
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 039800 280 PIGVSGSVIIVTVLYCLMAASMSMLMPY 307 (576)
Q Consensus 280 p~ai~~~~~~~~i~y~~~~~~~~~~~~~ 307 (576)
++....+...+..+|+...+......++
T Consensus 266 ~~~~~l~~~~v~~~y~~~~~~gY~~fG~ 293 (473)
T PLN03074 266 KYIYLAATLYVLTLTLPSAAAVYWAFGD 293 (473)
T ss_pred cchHHHHHHHHHHHHHHHHHeeeeeech
Confidence 8888888887888877766654444443
|
|
| >PRK11375 allantoin permease; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-06 Score=89.68 Aligned_cols=329 Identities=10% Similarity=0.018 Sum_probs=158.0
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHhhhcCcCCC-chhH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA---IVISYAIAGLCALLSAFCYTEFAVDMPVAG-GAFS 123 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~li~~l~~~~~a~~~~el~~~~p~~G-g~y~ 123 (576)
..++-+|+.++++.+.+=++..+..+.+...+..+. .|-+ ++++.+++.++........+..+. +.| +...
T Consensus 19 pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~--~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~---~~Gl~~~v 93 (484)
T PRK11375 19 PKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI--LGLSTFSIMLAIILSAFFIAAVMVLNGAAGS---KYGVPFAM 93 (484)
T ss_pred cCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHHHHHHHHhccccc---ccCCChhH
Confidence 344456778999988887777765444422333332 3332 445555555444444444444444 444 4677
Q ss_pred HHHHHhchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCC-CCCchh-hHHHHHHHHHHHHHH
Q 039800 124 YLRVTFGEFAAFLTGSNLI-LEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLP-DGFNEI-DVLAVAVVLVITFVI 200 (576)
Q Consensus 124 ~~~~~~g~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~ 200 (576)
..+..||.+.+.+.+.... +..+...+......++.+...+....+.+...-++++ .+.... .+..+++.++.+.+.
T Consensus 94 ~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~ 173 (484)
T PRK11375 94 ILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG 173 (484)
T ss_pred hHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 8888999887777776653 4555555555555555554333111000100000000 011111 123334445555667
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCCCCCC-------chhHHHHHHHHHHHHHh-hhhhHhhhhhh
Q 039800 201 CYSTRDSSVVNMILTVLHILFIAFVILMGFWK-DPKNPSGFFPY-------GAKGVFNGAAMVYLSYI-GYDAVSTMAEE 271 (576)
Q Consensus 201 ~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~~~~~-------g~~~~~~~~~~~~~~f~-G~e~~~~~~~E 271 (576)
..|.|...+++.+...+.++..+.+.+..+.. +.+......+. ....+..++...+-.+. +.-..+.++..
T Consensus 174 ~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy 253 (484)
T PRK11375 174 FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQN 253 (484)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcc
Confidence 78999999999888888766655555444433 22111111111 12334444433333333 33345566677
Q ss_pred hcCcCCchhhHHHHHHHHHHHHHHHHHHHH-HhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHH-HH
Q 039800 272 VKNPVKDIPIGVSGSVIIVTVLYCLMAASM-SMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLL-VA 349 (576)
Q Consensus 272 ~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 349 (576)
.|+++ +.-++...+..+...+..+..+.. ......-.....+| .+++. ..++.....+..+..+++..++.. .+
T Consensus 254 ~k~~~-~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp-~~i~~--~~~~~~~~~~a~l~~v~a~~~tN~~~N 329 (484)
T PRK11375 254 AHSFR-AQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNV-LDIVQ--RWDSLFASFFAVLVILMTTISTNATGN 329 (484)
T ss_pred cCChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCH-HHHHH--HhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 77753 444565555555444332222221 11111000012333 33444 333344444455555556555533 34
Q ss_pred HhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhh
Q 039800 350 MLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFT 398 (576)
Q Consensus 350 ~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~ 398 (576)
.++.+--+ .+.+||.. |.| ++.++.++++.++....
T Consensus 330 ~ys~~~~l-----~~l~pk~i---~~~-----~~~~i~~iig~~~~pw~ 365 (484)
T PRK11375 330 IIPAGYQI-----AALAPTKL---TYK-----NGVLIASIISLLICPWK 365 (484)
T ss_pred cccHHHHH-----HHhCcCcc---chh-----hHHHHHHHHHHHhccHH
Confidence 44444333 44667543 312 35666666666655443
|
|
| >COG3949 Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-06 Score=82.67 Aligned_cols=264 Identities=17% Similarity=0.178 Sum_probs=163.8
Q ss_pred HHHhhhhhhhhHHhchHHhhhhccch---HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHH
Q 039800 63 CFGIGGMVGAGVFVTTGRASRLNAGP---AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGS 139 (576)
Q Consensus 63 ~~~~~~~ig~gi~~~~~~~~~~~~G~---~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~ 139 (576)
+..++.++|.|.- .|+-.-+.-|+ ...++.++++++....+....|+++++.. ...-++.++.+||.++...-.
T Consensus 10 f~~ig~~vGAGfA--sGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a-~~y~~~~~~v~~~~~~ki~d~ 86 (349)
T COG3949 10 FAFIGTVVGAGFA--SGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA-TSYREILKYVSGPKFAKIIDI 86 (349)
T ss_pred HHHHHHhhccccc--chHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHhhHHHHHHHHH
Confidence 3445677888843 34333233444 38889999999999999999999999973 347788999999999887765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHH
Q 039800 140 NLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYS-TRDSSVVNMILTVLH 218 (576)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~ 218 (576)
...+.-...+.....+.++.+.+.++.+ .| +-+++++.+...+..++ ++..-+++.+.+.+.
T Consensus 87 ~iif~lf~~~vVM~AGags~~~e~~~lP--~w---------------iGali~i~~v~i~lfl~~vegi~tvn~iI~P~L 149 (349)
T COG3949 87 IIIFFLFSTAVVMLAGAGSLLEEMFGLP--YW---------------IGALIIILLVLILLFLGRVEGIITVNGIITPFL 149 (349)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHhCcc--HH---------------HHHHHHHHHHHHHHHHhcccceeeeheeHHHHH
Confidence 4444333333333333444676666542 22 33355666666666666 788888888777776
Q ss_pred HHHHHHHHHHhhccCCCC-CCCC--CCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHH
Q 039800 219 ILFIAFVILMGFWKDPKN-PSGF--FPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYC 295 (576)
Q Consensus 219 l~~~~~~~i~~~~~~~~~-~~~~--~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~ 295 (576)
++.+.............+ .+.. ...+|..-..+ ...+-..........+++|+|++ |+.-++-..+-++.+++..
T Consensus 150 Ii~l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~~~~-Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~~ 227 (349)
T COG3949 150 IIILVLVTLSFQFTNLGNAAQIVLTKQGNWKASAVG-YGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLLF 227 (349)
T ss_pred HHHHHHHHHHHHHhhccchhhhcCCcCCChHHHHHh-hhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHHHHHH
Confidence 666443333333321111 1111 11222211111 11111123344456778999995 6777888888888888888
Q ss_pred HHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039800 296 LMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLG 352 (576)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (576)
+.........| +-.+.+-|..++.+ ..+ +....++.+.......++..+.+++
T Consensus 228 l~nlsLi~~~~-~v~~~dIP~l~i~~--~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 228 LINLSLIALYD-KVVNYDIPLLTIAK--NFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred HHHHHHHhhcc-hhhccCCcHHHHHH--hcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777666444 33455779999998 666 6666677777777777776665554
|
|
| >PF13906 AA_permease_C: C-terminus of AA_permease | Back alignment and domain information |
|---|
Probab=98.86 E-value=5e-09 Score=73.02 Aligned_cols=51 Identities=35% Similarity=0.906 Sum_probs=49.2
Q ss_pred cccccccHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhccc
Q 039800 496 WGVPLMPWIPCISIFLNIFLLGSLDGPSYVRFGFFSALAVLVYLLYSVHAS 546 (576)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 546 (576)
||+|.+|++|.++++.|++++.+++..+|+.+++|+++|+++|+.|++||+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 688999999999999999999999999999999999999999999999985
|
|
| >PRK11017 codB cytosine permease; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00027 Score=73.87 Aligned_cols=218 Identities=12% Similarity=0.056 Sum_probs=116.1
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
+|+ +.++.+..-++..+....+...+.. ...-+. .++++.+++.++........+..+.+.-. ......+..||.
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~~~~g~~l-~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G~--~~~v~sR~~FG~ 83 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSASMWAGGTL-GTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTGL--STHLLARFSFGE 83 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CHHHHHHHHhch
Confidence 344 7777665555544443333222222 111122 25566666655555444444444444322 466677889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (576)
+.+.+.+....+..+...+.+....+..+...++.+.+ ...+++.++.+.....|.|...+++
T Consensus 84 ~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~~~~-----------------~~~~i~~~l~~~~~~~G~~~i~~~~ 146 (404)
T PRK11017 84 KGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGLDIN-----------------LLIVLSGLLMTVTAYFGISALTILS 146 (404)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888887777776666666666666555555442210 2233344555666678889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-C-CCCCCCCCCCchhHHHHHHHHHHHH-HhhhhhHhhhhhhhcCcCCchhhHHHHHHH
Q 039800 212 MILTVLHILFIAFVILMGFWK-D-PKNPSGFFPYGAKGVFNGAAMVYLS-YIGYDAVSTMAEEVKNPVKDIPIGVSGSVI 288 (576)
Q Consensus 212 ~~~~~~~l~~~~~~~i~~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~-f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~ 288 (576)
++......+..+...+....+ + .+......+.+...+..++...+-. ..+.-..+.++...|+++ +.-.+...+..
T Consensus 147 ~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~-~~~~~~~lg~~ 225 (404)
T PRK11017 147 RIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAK-IAVLATMVAFF 225 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCcc-ceeehhHHHHH
Confidence 988877766655544433332 1 1111111122223344444332222 233445566777777764 33355555544
Q ss_pred HHHH
Q 039800 289 IVTV 292 (576)
Q Consensus 289 ~~~i 292 (576)
+...
T Consensus 226 i~~~ 229 (404)
T PRK11017 226 LGNS 229 (404)
T ss_pred HHHH
Confidence 4333
|
|
| >COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.4e-05 Score=76.64 Aligned_cols=168 Identities=10% Similarity=0.075 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 039800 90 IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTA 169 (576)
Q Consensus 90 ~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (576)
.+++.+++-++........++++.+...+ ...-.+..||...+.+.....++.++...+.+....++..... ...+
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~--~~~~ 129 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG--TGLP 129 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC--CCCc
Confidence 56666666666666666666666665433 3444566889988888888888887777777766655542221 1111
Q ss_pred ccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCC-CCCCCCCchhH
Q 039800 170 KWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK-DPKN-PSGFFPYGAKG 247 (576)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~-~~~~~~~g~~~ 247 (576)
.....++..++.++...+|.|...+++++......+..+..+...+-. +..+ ...-.|.++..
T Consensus 130 ---------------~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (442)
T COG1457 130 ---------------VWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLS 194 (442)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchh
Confidence 113444555677888899999999999999999888876666665552 2111 11112445556
Q ss_pred HHHHHHHHHHHHhhhh-hHhhhhhhhcCcC
Q 039800 248 VFNGAAMVYLSYIGYD-AVSTMAEEVKNPV 276 (576)
Q Consensus 248 ~~~~~~~~~~~f~G~e-~~~~~~~E~k~p~ 276 (576)
+..++..++-.+..+- .++..+.-.|+|+
T Consensus 195 fl~a~slv~g~~~sw~~~~aDysRy~~~~t 224 (442)
T COG1457 195 FLSALSLVIGSFASWGPYAADYSRYAPSPT 224 (442)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhcCCCc
Confidence 6666666554444443 3345555556554
|
|
| >PRK09442 panF sodium/panthothenate symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00022 Score=76.63 Aligned_cols=286 Identities=13% Similarity=0.110 Sum_probs=154.3
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHH---HHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISY---AIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~---li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
.|+++++.......+..++++.+......... .|.. .+.+. ....+.....+.-+.++.++. +.-..++|.++.
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYK-YGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 47789888877777777777666665544443 3433 11111 111112223444455666655 345799999999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 129 FGEF-AAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 129 ~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
||+. ...+.+....+..+...+......+..++..++.+... .+.+..++...+...-|.|..
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi~~~~----------------~iii~~~iv~iYt~~GGl~av 181 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGISYET----------------GLLIFGITVALYTAFGGFRAV 181 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH----------------HHHHHHHHHHHHHHhccHHHH
Confidence 9954 56666666666666667777777788888877643210 122222333445556788877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--------------CCCCCCCCCCCchh--HHHHHH-HHHHHHHhhhhhHhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWK--------------DPKNPSGFFPYGAK--GVFNGA-AMVYLSYIGYDAVSTMAE 270 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~--------------~~~~~~~~~~~g~~--~~~~~~-~~~~~~f~G~e~~~~~~~ 270 (576)
.....+-..+.++..+++....+.. +++.+.+..+.++. ...... ........+.....+=.=
T Consensus 182 ~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~ 261 (483)
T PRK09442 182 VLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCM 261 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7777666666555544433322211 11111222222211 111111 111222233333333333
Q ss_pred hhcCcCCchhhHHHHHHHHHHHHHHHHHHHH-Hh--cccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHH
Q 039800 271 EVKNPVKDIPIGVSGSVIIVTVLYCLMAASM-SM--LMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLL 347 (576)
Q Consensus 271 E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~-~~--~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (576)
..||+ |+..|+..++.+....+++...+.- .. ..|. ..+++..++....+ .. ++++..++..+++.+.+++..
T Consensus 262 aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~-~l-p~~l~gl~~a~~~aA~mST~~ 337 (483)
T PRK09442 262 SYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLK-VL-PPFAAGIFLAAPMAAIMSTVD 337 (483)
T ss_pred HcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHH-Hc-CHHHHHHHHHHHHHHHHHHHH
Confidence 35775 5788888888766665554433321 11 2232 22234445555552 44 488888888888888888888
Q ss_pred HHHhhHHHHHHHHhhc
Q 039800 348 VAMLGQARYMCVIGRS 363 (576)
Q Consensus 348 ~~~~~~sR~l~a~a~d 363 (576)
+.+.+.+-. ++||
T Consensus 338 s~l~~~ss~---~~~D 350 (483)
T PRK09442 338 SQLLQSSST---IIKD 350 (483)
T ss_pred HHHHHHHHH---HHHH
Confidence 877766653 4455
|
|
| >PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-09 Score=112.16 Aligned_cols=357 Identities=12% Similarity=0.117 Sum_probs=197.6
Q ss_pred cccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCc---CCCchhHHHHHHh
Q 039800 54 KTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMP---VAGGAFSYLRVTF 129 (576)
Q Consensus 54 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p---~~Gg~y~~~~~~~ 129 (576)
|+-+.++.+...++.++|+|++..|-.... +|-. .++..++.++++......+.|.....| +.....+-+++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~--~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQ--SGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHH--hhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 467889999999999999999988765533 5654 556667777888888888888888765 3333444457899
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 130 GEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 130 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
||+.++++.....+.....+..+....++.+..+++...+... .+. . ...++...+..-+. -.|....
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~-------~~~--~-~~~~i~~~i~~pls--~~~~l~~ 146 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLF-------ISR--Y-VWIIIFALIVLPLS--FLKNLKS 146 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccccc-------ccc--c-cccccccccccccc--ccchhhH
Confidence 9999988888777777777776666666666665543211100 000 0 11111111111111 1233333
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhcc----CCCCC---CCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCC--c
Q 039800 210 VNMILTVLHILFIA--FVILMGFWK----DPKNP---SGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVK--D 278 (576)
Q Consensus 210 ~~~~~~~~~l~~~~--~~~i~~~~~----~~~~~---~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r--~ 278 (576)
+........+.... .+.+..... +..+. ....+..+.++..++....++|.+........+|+|+|+| +
T Consensus 147 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~ 226 (409)
T PF01490_consen 147 LRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKK 226 (409)
T ss_pred HHHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccc
Confidence 32222222222211 111111111 11111 1112344678999999999999999999999999999875 3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039800 279 IPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMC 358 (576)
Q Consensus 279 ~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 358 (576)
+.|+...+...+.++|.+..+.-....+.+ .+ ++...-+. ...+...+..+...+..+.+.--..+...+.+.
T Consensus 227 ~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~-~~--~~il~n~~----~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~ 299 (409)
T PF01490_consen 227 MKKVLSISMIICFIIYLLFGIFGYLAFGDS-VQ--GNILLNLP----NDDVLIIIARILLVISLLLSYPLQLFPARNSLE 299 (409)
T ss_pred cceeeeehhhhhhHHhhhhhhcccceeeee-ec--chhhhcCC----CcccccccccccchhhhhhccccccchhHhhhh
Confidence 559999999999999999888766555432 11 12222222 111333444444444544444344444555555
Q ss_pred HHhhcC--CCchhhhhhcCCCCCchhHH-HHHHHHHHHHHH-hhcHHHHHHHHHH--HHHHHHHHHHHHHHHHhhccCCC
Q 039800 359 VIGRSS--VVPAWFARVHPKTSTPVNAS-AFLGIFTAAIAL-FTDLTVLLNLVSI--GTLFVFYMVANAVIYRRYVNLGT 432 (576)
Q Consensus 359 a~a~dg--~lP~~~~~~~~~~~~P~~ai-~~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~ 432 (576)
..-++. ..++ ..+..++.+..+..+ ....+++.+++. ..+++.+.++.+. +..+.|+++...+++.+++++++
T Consensus 300 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~ 378 (409)
T PF01490_consen 300 NLLFKRAASSRD-SPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNS 378 (409)
T ss_pred hheecccccccc-ccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccc
Confidence 544321 0000 000010111111111 112222222222 2567777777543 34677888888888877665543
|
UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified. |
| >TIGR02119 panF sodium/pantothenate symporter | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0012 Score=70.88 Aligned_cols=283 Identities=11% Similarity=0.047 Sum_probs=151.5
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHH-HHHH---HHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAI-VISY---AIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~-~~~~---li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
.|+++++......++..++.+.+...+..... .|... ...+ ..+.+.....+.-+.++.++. +.-..++|.++.
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 47799999888888888887777665544433 34331 1111 111111112233344445544 345799999999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhh
Q 039800 129 FGEF-AAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDS 207 (576)
Q Consensus 129 ~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 207 (576)
||++ ...+.+....+...........+.+..++..++.+... .+.+..++.+.+...-|.|..
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~~~~----------------~iii~~~iv~iYt~~GG~~av 180 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGLSYLT----------------ALFIFSSSVLIYTTFGGFRAV 180 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----------------HHHHHHHHHHHHHHhhhHHHH
Confidence 9954 45666665555555555666666777777777643210 122222334455556788887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--C------------CCCCCCCCCCchh--HHHHHH-HHHHHHHhhhhhHhhhhh
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWK--D------------PKNPSGFFPYGAK--GVFNGA-AMVYLSYIGYDAVSTMAE 270 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~--~------------~~~~~~~~~~g~~--~~~~~~-~~~~~~f~G~e~~~~~~~ 270 (576)
...+.+-..+.++..+++....+.. + ++...++.+.++. .+.... ....+...+.....+-.-
T Consensus 181 ~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~ 260 (471)
T TIGR02119 181 ALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCM 260 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHH
Confidence 7777776666655554444333222 1 1111122222211 111111 111122223333333444
Q ss_pred hhcCcCCchhhHHHHHHHHHHHHHHHHHHHH-Hh-cccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHH
Q 039800 271 EVKNPVKDIPIGVSGSVIIVTVLYCLMAASM-SM-LMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLV 348 (576)
Q Consensus 271 E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~-~~-~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 348 (576)
..||+ |+..|+...+.+....++....+.- .. ...++..+++..++....+ .+ ++++..++....+.+.+++..+
T Consensus 261 aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~-~l-p~~~~gl~~a~llaA~mST~~s 337 (471)
T TIGR02119 261 SYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIK-VL-PPILAGIFLAAPMAAIMSTVNS 337 (471)
T ss_pred hcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHH-Hc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 55774 6888998888766655554433321 11 1122222234445555542 44 4788888888888888888888
Q ss_pred HHhhHHHH
Q 039800 349 AMLGQARY 356 (576)
Q Consensus 349 ~~~~~sR~ 356 (576)
.+.+.|-.
T Consensus 338 ~l~~~ss~ 345 (471)
T TIGR02119 338 LLLQSSST 345 (471)
T ss_pred HHHHHHHH
Confidence 77777655
|
Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi. |
| >PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0003 Score=72.73 Aligned_cols=310 Identities=16% Similarity=0.201 Sum_probs=162.8
Q ss_pred HHhhhhhhhhHHhchHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHHH
Q 039800 64 FGIGGMVGAGVFVTTGRASRLNAGPA---IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSN 140 (576)
Q Consensus 64 ~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~ 140 (576)
+.++.-.|+|-..-|+..-.. +|.. +.++++++++..=..+.. +. -..||.+.=..+..||..|.+....
T Consensus 11 ~LFamFFGAGNLIFPp~lG~~-aG~~~~~a~~GF~lTgV~lP~Lgvi----a~--~~~~~~~~~l~~~v~~~f~~if~~~ 83 (427)
T PF05525_consen 11 ALFAMFFGAGNLIFPPFLGQQ-AGSNWWPAMIGFLLTGVGLPLLGVI----AV--AKSGGGIEDLASRVGPKFALIFTIL 83 (427)
T ss_pred HHHHHHhCCccccchHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHH----HH--hhcCCCHHHHhcccCcHHHHHHHHH
Confidence 334444678877777766555 6654 444555555443222221 11 1234344444445577766655532
Q ss_pred HHHHHHHHHH--HHHHHHHH----HHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 039800 141 LILEYVMSNA--AVARGFAS----YFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMIL 214 (576)
Q Consensus 141 ~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (576)
. |....+ +..+..+. -+...++. ...+ ...+..+++..+..++.+..-|...++.+++
T Consensus 84 i---~l~IGP~~aiPRtaa~sfe~~i~p~~~~-~~~~------------~~~ifs~iFF~i~~~l~~~p~kivd~iGk~L 147 (427)
T PF05525_consen 84 I---YLSIGPLFAIPRTAAVSFEMGIAPFFPE-NSNI------------SLLIFSIIFFAITYLLSLNPSKIVDRIGKFL 147 (427)
T ss_pred H---HHHHHhcccCcchhhhhHHHhhhccCCc-cccc------------chhhhhHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 2 211111 11122221 12222221 1111 1225677778888888999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCC---CCCC-CCCCCc-hhHHHHHHH----HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHH
Q 039800 215 TVLHILFIAFVILMGFWKDP---KNPS-GFFPYG-AKGVFNGAA----MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSG 285 (576)
Q Consensus 215 ~~~~l~~~~~~~i~~~~~~~---~~~~-~~~~~g-~~~~~~~~~----~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~ 285 (576)
+...++.++++++.++.+.. .... ++.++. ..|+..|-- .+...|...-..+--....||+ |+..|.+..
T Consensus 148 TP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ 226 (427)
T PF05525_consen 148 TPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIK 226 (427)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Confidence 99999999999999988721 1111 111111 122222211 1223333333333333333443 344444444
Q ss_pred HH----HHHHHHHHHHHHHHHhcccC-C-cCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 039800 286 SV----IIVTVLYCLMAASMSMLMPY-D-MIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCV 359 (576)
Q Consensus 286 ~~----~~~~i~y~~~~~~~~~~~~~-~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 359 (576)
+- ....++|......=....+. + +.+....+..+.++ .+| +.+..++.+.+.++|+++..+.+.+++.....
T Consensus 227 ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~-~~G-~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~ 304 (427)
T PF05525_consen 227 AGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANH-LFG-SAGQILLGIIVFLACLTTAIGLISACAEYFSE 304 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHH-HcC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 33444455444432211111 1 11222344555554 666 77889999999999999999999888887544
Q ss_pred HhhcCCCchhhhhhcCCCCCchhHH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 039800 360 IGRSSVVPAWFARVHPKTSTPVNAS-AFLGIFTAAIALFTDLTVLLNLVSIGTLFVF 415 (576)
Q Consensus 360 ~a~dg~lP~~~~~~~~~~~~P~~ai-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 415 (576)
..| +.+++.. ++.++++.+++-+ .++.+.++..-...+.|
T Consensus 305 -------------~~~--kisY~~~v~i~~i~S~~ian~-Gl~~Ii~~s~PiL~~iY 345 (427)
T PF05525_consen 305 -------------LFP--KISYKVWVIIFTIFSFIIANL-GLDQIIKISVPILMFIY 345 (427)
T ss_pred -------------Hhc--ccChHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHh
Confidence 442 3444433 2334455444443 56777777766666666
|
They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane |
| >TIGR02121 Na_Pro_sym sodium/proline symporter | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0016 Score=69.97 Aligned_cols=283 Identities=10% Similarity=0.092 Sum_probs=135.4
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHH-HHHHHHHHHHhhhc----CcCCCchhHHHHH
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLC-ALLSAFCYTEFAVD----MPVAGGAFSYLRV 127 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~-~~~~a~~~~el~~~----~p~~Gg~y~~~~~ 127 (576)
.|+++++-......+..+++..+...+..... .|....+. .++..+ .+...+.+++--++ .++.-..++|.++
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~-~G~~~~~~-~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV-TGLSELWI-AIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH-hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 46788887765555555665555543333223 45432221 122222 22223333332222 2234468999999
Q ss_pred Hhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcc
Q 039800 128 TFGE---FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYST 204 (576)
Q Consensus 128 ~~g~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (576)
.||+ ....+.+....+......+....+.+..++..++.+... .+.+...+.+.+...-|.
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~----------------~iii~~~i~~~Yt~~GGl 176 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGLDYKT----------------GLLIGALIIVIYTFFGGF 176 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHH----------------HHHHHHHHHHHHHHhhhH
Confidence 9994 344445544444555556666666777777776643210 122222334455556677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcc--------------CCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhh
Q 039800 205 RDSSVVNMILTVLHILFIAFVILMGFWK--------------DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAE 270 (576)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~--------------~~~~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~ 270 (576)
|.......+-..+.++..+++.+..+.+ +++.++.+.+.++.++...+... ..+.|.....+=.=
T Consensus 177 ~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~p~~~qR~~ 255 (487)
T TIGR02121 177 LAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAWG-LGYFGQPHIIVRFM 255 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHHH-HHhccchHHHHHHH
Confidence 7777666665555554443333332222 11111212222222222211111 11122222222122
Q ss_pred hhcCcCCchhhHHHHHHHHHHHHHHHHH----HHHHhcccCCcC---CCCchHHHhhccCCCChhHHHHHHHHHHHHHHH
Q 039800 271 EVKNPVKDIPIGVSGSVIIVTVLYCLMA----ASMSMLMPYDMI---DAEAPFSGAFSGKSDGWKWVSNVIGVGASFGIL 343 (576)
Q Consensus 271 E~k~p~r~~p~ai~~~~~~~~i~y~~~~----~~~~~~~~~~~~---~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 343 (576)
-.||+ |+..|+...+.......++... ..........+. +++..++.... ..-++++..++....+.+.+
T Consensus 256 aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~--~~~p~~l~gl~~a~ilaA~m 332 (487)
T TIGR02121 256 AIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQ--ILFHPWIAGILLAAILAAIM 332 (487)
T ss_pred hcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHH--HhccHHHHHHHHHHHHHHHH
Confidence 23554 5777887766543322221111 111111111111 23344555555 33447888888888888889
Q ss_pred HHHHHHHhhHHHHH
Q 039800 344 TSLLVAMLGQARYM 357 (576)
Q Consensus 344 ~~~~~~~~~~sR~l 357 (576)
++..+.+.+.|-.+
T Consensus 333 ST~~s~l~s~ss~~ 346 (487)
T TIGR02121 333 STISSQLLVSSSAL 346 (487)
T ss_pred HHHHHHHHHHHHHH
Confidence 98888888877653
|
This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. |
| >PRK15419 proline:sodium symporter PutP; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0017 Score=70.03 Aligned_cols=154 Identities=12% Similarity=0.025 Sum_probs=84.4
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHH-HHHHHH----HhhhcCcCCCchhHHHHH
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALL-SAFCYT----EFAVDMPVAGGAFSYLRV 127 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~-~a~~~~----el~~~~p~~Gg~y~~~~~ 127 (576)
.|+++++.......+..+++..+...+..... .|....+. .++..+... ....+. .-..+.+..-..++|.++
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~-~G~~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFL-SGISESWI-AIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHH-cCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 47799998887777777877777655444433 45543221 222222211 111111 111223345578999999
Q ss_pred Hhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcc
Q 039800 128 TFGE---FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYST 204 (576)
Q Consensus 128 ~~g~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (576)
.||+ ....+.+....+......+......+..++..++.+.. ..+.+...+...+...-|.
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~----------------~~iii~~~iv~iYt~~GGl 180 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYE----------------TALWAGAAATILYTFIGGF 180 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----------------HHHHHHHHHHHHHHHhhhH
Confidence 9984 45555555555555556666666667777777664321 1222223334445556677
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 039800 205 RDSSVVNMILTVLHILFIAF 224 (576)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~~~ 224 (576)
|.....+.+-..+.++..++
T Consensus 181 ~aV~~TD~iQ~~imi~g~i~ 200 (502)
T PRK15419 181 LAVSWTDTVQASLMIFALIL 200 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777666666555544433
|
|
| >TIGR00813 sss transporter, SSS family | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.0004 Score=72.95 Aligned_cols=283 Identities=13% Similarity=0.052 Sum_probs=157.1
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch-
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE- 131 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~- 131 (576)
.|+++++......++..++++.+......... .|...++..+...+..+..+..+.+.-++.+ .-..++|.++.||+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYA-YGFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCch
Confidence 37789988888888878887777666555444 4543332222223334456666666655544 45799999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHH
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVN 211 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (576)
....+.+....+..+...+....+.+..++..++.+... .+.+...+...+...-|.|......
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi~~~~----------------~~ii~~~i~~~Yt~~GG~~av~~Td 143 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSVDLFSGALLIELITGLDLYL----------------SLLLLGAITILYTVFGGLKAVVWTD 143 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH----------------HHHHHHHHHHHHHHHcchHHHHHHH
Confidence 566677777777778888888888888888877643211 1222223334455567888777776
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-C-C-------CCCCC----------CCCCc---hhHH---HHHHHHHHHHHhhhhh-H
Q 039800 212 MILTVLHILFIAFVILMGFWK-D-P-------KNPSG----------FFPYG---AKGV---FNGAAMVYLSYIGYDA-V 265 (576)
Q Consensus 212 ~~~~~~~l~~~~~~~i~~~~~-~-~-------~~~~~----------~~~~g---~~~~---~~~~~~~~~~f~G~e~-~ 265 (576)
.+-..+.++..+++.+..+.+ + + .+..+ ...++ ...+ ..+.+.....+. .+. .
T Consensus 144 ~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~ 222 (407)
T TIGR00813 144 TIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYW-TNQVI 222 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHh-cCHHH
Confidence 666666555443333332222 0 0 00000 00000 0011 111111111111 111 1
Q ss_pred hhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHH-HHh--ccc----CCc----CCCCchHHHhhccCCCChhHHHHHH
Q 039800 266 STMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAAS-MSM--LMP----YDM----IDAEAPFSGAFSGKSDGWKWVSNVI 334 (576)
Q Consensus 266 ~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~-~~~--~~~----~~~----~~~~~p~~~~~~~~~~g~~~~~~~~ 334 (576)
.+=.=-.|| +|+.+|+...+.+...+++....+. +.. ..+ ..+ .+.+..++.... ..-++++..++
T Consensus 223 ~qR~~a~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~--~~lp~~l~gl~ 299 (407)
T TIGR00813 223 VQRCLAAKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQ--ELMPPGLAGLF 299 (407)
T ss_pred hhHHHhcCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHH--HHcCcchHHHH
Confidence 122223366 4688899888877666655433322 111 122 111 133444555555 33347888888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Q 039800 335 GVGASFGILTSLLVAMLGQARYM 357 (576)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~sR~l 357 (576)
.+..+.+.+++..+.+.+.|-.+
T Consensus 300 ~agilaA~mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 300 LAAILAAVMSTLSSQLNSASTVF 322 (407)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Confidence 88888888888888887776654
|
have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli. |
| >COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0028 Score=65.72 Aligned_cols=182 Identities=8% Similarity=0.069 Sum_probs=105.9
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 126 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~ 126 (576)
...+.+|+.++++.+.+=.+.....+.+...+......-++. .+++.+++-++.......-+..++++-- ..-.-.+
T Consensus 33 P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gI--pFpv~~R 110 (497)
T COG1953 33 PTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGI--PFPVLSR 110 (497)
T ss_pred CCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCC--CchHHHH
Confidence 444567889999998887777766555555555544423343 6666777666665555555444444322 1334567
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccC--CCCCCCchhhHHHHHHHH-HHHHHHHhc
Q 039800 127 VTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVD--GLPDGFNEIDVLAVAVVL-VITFVICYS 203 (576)
Q Consensus 127 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~g 203 (576)
..||-..+-.-.....+.-+..-..++...+.-++.++...-+.++...+ +...... ...++..+.+ +-..+...|
T Consensus 111 aSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt-~~~i~F~ifW~l~~l~~~~g 189 (497)
T COG1953 111 ASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTT-LELICFFIFWVLQLLVLFKG 189 (497)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcH-HHHHHHHHHHHHHHHHHhcC
Confidence 77887666655555555555555555555555555443321111111110 0111111 1234443333 344556779
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039800 204 TRDSSVVNMILTVLHILFIAFVILMGFWK 232 (576)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 232 (576)
.+...|++.+...+..+..+.+.+....+
T Consensus 190 ~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~ 218 (497)
T COG1953 190 MESIRKFETWAGPLVYIAMLGLAIWALVK 218 (497)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence 99999999999999988888888887776
|
|
| >TIGR00800 ncs1 NCS1 nucleoside transporter family | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0024 Score=67.79 Aligned_cols=239 Identities=10% Similarity=0.044 Sum_probs=123.4
Q ss_pred CCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccch---HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHH
Q 039800 49 GSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP---AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYL 125 (576)
Q Consensus 49 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~---~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~ 125 (576)
.++-+|+.++++.+.+=++..+....+..-+... . .|- .++++.+++.++........+..+.+.-. ......
T Consensus 7 vp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~-~-~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~s 82 (442)
T TIGR00800 7 VKEEERTWSFLNYFSLWLGAAFNIATWAIGALGL-P-LGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVLS 82 (442)
T ss_pred CCcccCCccHHHHHHHHHHHhhhHHHHHHHHHHH-h-cCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchhh
Confidence 3445566799998888777776544443322222 1 232 25556666655555555555555554432 466778
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHH--HHHHhc
Q 039800 126 RVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVIT--FVICYS 203 (576)
Q Consensus 126 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g 203 (576)
+..||.+.+.+.+...++..+...+.+....++.++..++.-.+.+.. .+.+.+....+..++...+. +....|
T Consensus 83 R~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~----~~~~~t~~~~~~~~i~~~l~~~~~~~~g 158 (442)
T TIGR00800 83 RASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLH----LGNGMTTLELICFIIFWALVLVFLFFFG 158 (442)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccc----cCCcccHHHHHHHHHHHHHHHHHHHcCH
Confidence 889999988888888888888888888888877666554321111000 00000001123222322222 234556
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCC-C----CCCCchhHHHHHHHHHHHH-HhhhhhHhhhhhhhcCcC
Q 039800 204 TRDSSVVNMILTVLHILFIAFVILMGFWKD-PKNPS-G----FFPYGAKGVFNGAAMVYLS-YIGYDAVSTMAEEVKNPV 276 (576)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~-~~~~~-~----~~~~g~~~~~~~~~~~~~~-f~G~e~~~~~~~E~k~p~ 276 (576)
.|...+.+.......++.+++++......+ ..+.. . -.+.....++.++...+-. ..+....+.++...|+++
T Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~ 238 (442)
T TIGR00800 159 YKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKK 238 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCcc
Confidence 666666655555554444433332222111 11111 1 1122334455554443322 234445667778888764
Q ss_pred CchhhHHHHHHHHHHHHHHH
Q 039800 277 KDIPIGVSGSVIIVTVLYCL 296 (576)
Q Consensus 277 r~~p~ai~~~~~~~~i~y~~ 296 (576)
+..++...+.....+...+
T Consensus 239 -~~~~~~~~~~~~~~~~~~~ 257 (442)
T TIGR00800 239 -TAIWGQFLALPGGFTLTCF 257 (442)
T ss_pred -chHHHHHHHHHHHHHHHHH
Confidence 4556655555555444333
|
The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism. |
| >PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.3e-05 Score=78.14 Aligned_cols=289 Identities=17% Similarity=0.154 Sum_probs=137.4
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchh
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEF 132 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~ 132 (576)
.|+++++......++..+|.+.+......... .|....+..+...+.....++.++.--++ .+.-...+|.++.+|+.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFLLFALFFAPRLRR-SGAVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHHHHHHHTHHHHHH-TT--SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHHHHHHHHHHhhcc-cchhhhhhhhhhhcCCc
Confidence 47789988887777877887777665544444 45443322222233333334444443332 34457999999999988
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 133 A--AFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 133 ~--g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
. ..+.+....+..+...+....+.+..++..++.+... .+.+...+...+...-|.|.....
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi~~~~----------------~~~i~~~i~~iYt~~GGl~av~~t 146 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGIPYNT----------------AILIVGVIVIIYTFFGGLRAVAWT 146 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--HHH----------------HHHHHHHHHHHTTCTT------SH
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccchhhhH----------------HHHHHHHHHHHhhhhhhHhhhhHH
Confidence 7 5665555666677777888888888888887643211 112222223333445577766655
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc--------------CCCCCCCCCCCch---hHHHHHHHHHHHHHhhhhhHhhhhhhh-
Q 039800 211 NMILTVLHILFIAFVILMGFWK--------------DPKNPSGFFPYGA---KGVFNGAAMVYLSYIGYDAVSTMAEEV- 272 (576)
Q Consensus 211 ~~~~~~~~l~~~~~~~i~~~~~--------------~~~~~~~~~~~g~---~~~~~~~~~~~~~f~G~e~~~~~~~E~- 272 (576)
+.+-..+.++..+++.+..+.. +++..+.+.|.+. .+........+....|.....+.....
T Consensus 147 d~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~ 226 (406)
T PF00474_consen 147 DFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRFL 226 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHHH
Confidence 5555554444443333332221 1211111222221 000100000001112333223333332
Q ss_pred --cCcCCchhhHHHHHHHHHHHHHHHH------HHHHHhcccC----CcCCCCchHHHhhccCCCChhHHHHHHHHHHHH
Q 039800 273 --KNPVKDIPIGVSGSVIIVTVLYCLM------AASMSMLMPY----DMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASF 340 (576)
Q Consensus 273 --k~p~r~~p~ai~~~~~~~~i~y~~~------~~~~~~~~~~----~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~ 340 (576)
||+ |+..|++..+.....+++... ........|. +..+++..+..... ...+++...++...++.
T Consensus 227 aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~gl~~~~~~a 303 (406)
T PF00474_consen 227 AAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAA--QYLPPGLAGLFLAGILA 303 (406)
T ss_dssp SSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT---TS-TTHHHHHHHHHHH
T ss_pred hcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhh--hhccchhHHHHHHHHHH
Confidence 443 577888777655444433331 1112222221 11223445666666 44448888888888888
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhcCC
Q 039800 341 GILTSLLVAMLGQARYMCVIGRSSV 365 (576)
Q Consensus 341 ~~~~~~~~~~~~~sR~l~a~a~dg~ 365 (576)
+.+++..+.+.+.+-. ++||=.
T Consensus 304 A~~ST~~s~l~a~ss~---~~~Di~ 325 (406)
T PF00474_consen 304 AIMSTADSLLLAISSI---FSRDIY 325 (406)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHCC
T ss_pred hhhHHHHHHHhhhhhh---hhHHhh
Confidence 8888888888877765 456633
|
Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A. |
| >PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0051 Score=63.75 Aligned_cols=209 Identities=12% Similarity=0.081 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCC----CCCCCCc-hhHHHHHHH----HHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWKDPKNP----SGFFPYG-AKGVFNGAA----MVYL 257 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~~~~g-~~~~~~~~~----~~~~ 257 (576)
+..+++..+..++.+..-|...++.++++...++.++++++.++.+...+. +.+..+. ..|+..|-- .+..
T Consensus 124 ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal 203 (439)
T PRK15433 124 IYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAM 203 (439)
T ss_pred HHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHH
Confidence 567777788888889999999999999999999999999999888721111 1111111 112222111 1223
Q ss_pred HHhhhhhHhhhhhhhcCcCCchhhHH----HHHHHHHHHHHHHHHHHHHhccc-CCcCCCCchHHH-hhccCCCChhHHH
Q 039800 258 SYIGYDAVSTMAEEVKNPVKDIPIGV----SGSVIIVTVLYCLMAASMSMLMP-YDMIDAEAPFSG-AFSGKSDGWKWVS 331 (576)
Q Consensus 258 ~f~G~e~~~~~~~E~k~p~r~~p~ai----~~~~~~~~i~y~~~~~~~~~~~~-~~~~~~~~p~~~-~~~~~~~g~~~~~ 331 (576)
.|...-..+.-....||+ |++.|.. ..+.....++|......=....+ .++.++...... ...+ .+| +++.
T Consensus 204 ~Fg~iii~~i~~~G~~~~-~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~-~~G-~~G~ 280 (439)
T PRK15433 204 VFGIVIVNAARSRGVTEA-RLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQH-TFG-GGGS 280 (439)
T ss_pred HHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHH-HhC-HHHH
Confidence 332222222233335554 3344444 34444444455554443222211 111212222222 2222 666 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchh-HHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 039800 332 NVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVN-ASAFLGIFTAAIALFTDLTVLLNLVSIG 410 (576)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~-ai~~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (576)
.+..+....+++++..+...+.++.+...- | .|+. .+++..+++..++-+ .++.++.+..-.
T Consensus 281 ~ll~iiv~lACLTTaIGLi~a~a~~f~~~~-----~-----------isY~~~v~i~~l~S~~lSn~-G~~~II~~s~Pi 343 (439)
T PRK15433 281 FLLAALIFIACLVTAVGLTCACAEFFAQYV-----P-----------LSYRTLVFILGGFSMVVSNL-GLSQLIQISVPV 343 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----C-----------CcHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHH
Confidence 999999999999999999998888754421 1 2332 233334444444433 456666666555
Q ss_pred HHHHH
Q 039800 411 TLFVF 415 (576)
Q Consensus 411 ~~~~~ 415 (576)
..+.|
T Consensus 344 L~~iY 348 (439)
T PRK15433 344 LTAIY 348 (439)
T ss_pred HHHHh
Confidence 55555
|
|
| >PRK10484 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.013 Score=63.60 Aligned_cols=291 Identities=11% Similarity=0.054 Sum_probs=136.5
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHH-HHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAI-AGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li-~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
.|+++++-......+..+++..+...+..... .|....+ |.. ..+..++.++.++.--.+. +.-..++|.++.||+
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ryg~ 113 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMA-WEVTAAIALIILALIFLPRYLKS-GITTIPDFLEERYDK 113 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhcCc
Confidence 47899998877777777777767655444433 4544321 222 2222333444444332332 334789999999998
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHH--HHHHHHHHHHhcchhhH
Q 039800 132 FAAFLTGSNLILEYVMS-NAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVA--VVLVITFVICYSTRDSS 208 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~ 208 (576)
......+....+.+... .+......+..++..++...- . +.+. .....+.++ .++...+...-|.|...
T Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~-~-----gi~~--~~~~~~~~~~~~~i~~~Yt~~GGl~aV~ 185 (523)
T PRK10484 114 TTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSEL-L-----GISY--GAAIWLLVWLIGIIGAIYAVFGGLKAVA 185 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-c-----CCcH--HHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 76665555544444432 222222333333333221100 0 0000 000011111 12224444556777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc----------------CCCCCCCCCC----CchhHHHHHHHHHHHHHhhhh-hHhh
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK----------------DPKNPSGFFP----YGAKGVFNGAAMVYLSYIGYD-AVST 267 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~----------------~~~~~~~~~~----~g~~~~~~~~~~~~~~f~G~e-~~~~ 267 (576)
....+-..+.++..+++.+..+.. +++.+....+ ..+...+.+.......+.+.+ ...+
T Consensus 186 ~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~q 265 (523)
T PRK10484 186 VSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIVQ 265 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 766666555544433322221111 1111111111 122223333322212222211 2222
Q ss_pred hhhhhcCcCCchhhHHHHHHHHHHHHHHHHHH---HHHhcccCCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHH
Q 039800 268 MAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAA---SMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILT 344 (576)
Q Consensus 268 ~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 344 (576)
=.=-.||+ |+..|+...+.....++++...+ ......|.+..+++..++....+ .. ++++..++....+.+.++
T Consensus 266 R~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~-~l-p~~l~Gl~~a~ilAA~mS 342 (523)
T PRK10484 266 RALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVND-VL-PVPLVGFFAAVLFGAILS 342 (523)
T ss_pred HHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHH-Hc-chhHHHHHHHHHHHHHHH
Confidence 22233663 57778887776555444333221 11112232222334456665552 44 377888888888888888
Q ss_pred HHHHHHhhHHHHH
Q 039800 345 SLLVAMLGQARYM 357 (576)
Q Consensus 345 ~~~~~~~~~sR~l 357 (576)
+..+.+.+.|-.+
T Consensus 343 T~~s~l~s~st~~ 355 (523)
T PRK10484 343 TFNGFLNSASTLF 355 (523)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776653
|
|
| >PRK09395 actP acetate permease; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.014 Score=63.78 Aligned_cols=154 Identities=14% Similarity=0.076 Sum_probs=87.8
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHH-HHHHHHHhhhcCcCCCchhHHHHHHhc-
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALL-SAFCYTEFAVDMPVAGGAFSYLRVTFG- 130 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~-~a~~~~el~~~~p~~Gg~y~~~~~~~g- 130 (576)
.|+++++......++..+++..|...+..... .|...++ +.++..+... ..+.+++--++. ..-..++|.++.||
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~~-~~~~~~~g~~~~~~~~~~~~r~~-g~~T~~d~l~~Rygs 144 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGLI-YSIGFLVGWPIILFLIAERLRNL-GKYTFADVASYRLKQ 144 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHcCC
Confidence 47789888777666777776666655544433 4544322 2233322222 233333322222 22467888889998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 131 EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 131 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
|....+.+....+..+..........+..++..++.+. + ..+.+..++...+...-|.|.....
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi~~--~--------------~~ili~~~i~~iYt~~GGm~av~~T 208 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGLNY--H--------------VAVVLVGVLMMVYVLFGGMLATTWV 208 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--H--------------HHHHHHHHHHHHHHhhcchHHHHHH
Confidence 55788877777766666667777777777777766432 1 1222233334445555688877777
Q ss_pred HHHHHHHHHHHHHHH
Q 039800 211 NMILTVLHILFIAFV 225 (576)
Q Consensus 211 ~~~~~~~~l~~~~~~ 225 (576)
+.+-..+.++..+++
T Consensus 209 D~iQ~iim~~g~ii~ 223 (551)
T PRK09395 209 QIIKAVLLLSGATFM 223 (551)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666665555544333
|
|
| >COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0088 Score=64.23 Aligned_cols=282 Identities=11% Similarity=0.099 Sum_probs=143.9
Q ss_pred ccccChHHHHHHHhhhh-hhhhHHhchHHhhhhccchH-HHHHHH---HHHHHHHHHHHHHHHhhhcCcCCCchhHHHHH
Q 039800 53 RKTLRWYDLVCFGIGGM-VGAGVFVTTGRASRLNAGPA-IVISYA---IAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 127 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~~G~~-~~~~~l---i~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~ 127 (576)
.|+++.+ ..+++.+.. .+...+...+..... .|.. .++... ...+.....+--..+++ +.++.-..++|.++
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~-~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~~ 113 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAYA-SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLEA 113 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHHH
Confidence 4778888 555555444 553334433333333 4554 333222 33344555666677777 66667789999999
Q ss_pred Hhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchh
Q 039800 128 TFG-EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRD 206 (576)
Q Consensus 128 ~~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 206 (576)
.|| +....+.+....+..+...+....+.+..++..++.+... ...++...+..+...-|.|.
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~~~----------------~~~~~~~~v~~Yt~~gG~~a 177 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVT----------------GILIGALIVALYTFLGGLRA 177 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHH----------------HHHHHHHHHHHHHHHcChhH
Confidence 999 8888999988888889999999988888887777632210 12222233344444556665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc-----------CCCCC----CCCCC-CchhHHHH---HHHHHHHHHhhhhhHhh
Q 039800 207 SSVVNMILTVLHILFIAFVILMGFWK-----------DPKNP----SGFFP-YGAKGVFN---GAAMVYLSYIGYDAVST 267 (576)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~~~i~~~~~-----------~~~~~----~~~~~-~g~~~~~~---~~~~~~~~f~G~e~~~~ 267 (576)
......+=..+.++.+..+.+..... +..+. .++.. ..+..... .....+..+...+...+
T Consensus 178 v~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~r 257 (493)
T COG0591 178 VVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPHILPR 257 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCchhhhh
Confidence 55554444444333333222222221 11111 11111 11111111 11112333444444444
Q ss_pred hhhhhcCcCCchhhHHHHHHHHHHHHHHHH-----HHHHHhcccCC-----cCCCCchHHHhhccCCCChhHHHHHHHHH
Q 039800 268 MAEEVKNPVKDIPIGVSGSVIIVTVLYCLM-----AASMSMLMPYD-----MIDAEAPFSGAFSGKSDGWKWVSNVIGVG 337 (576)
Q Consensus 268 ~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~-----~~~~~~~~~~~-----~~~~~~p~~~~~~~~~~g~~~~~~~~~~~ 337 (576)
.-. .|+++ +.||..........+.+++. ........... +.+.+..++.... ..-++|...++...
T Consensus 258 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~p~~~~g~~~~a 333 (493)
T COG0591 258 FMA-AKSIK-SLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLIL--ALFPPWIAGLLLAA 333 (493)
T ss_pred hhh-hccHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHH--HHChHHHHHHHHHH
Confidence 444 45543 33433333333332222222 11111111111 1233445555555 33347888888777
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q 039800 338 ASFGILTSLLVAMLGQARYM 357 (576)
Q Consensus 338 ~~~~~~~~~~~~~~~~sR~l 357 (576)
++.+.+++..+.+...|-.+
T Consensus 334 ilaAvmSt~ss~ll~~ss~~ 353 (493)
T COG0591 334 ILAAVMSTASSQLLVASSAI 353 (493)
T ss_pred HHHHHHHHHHHHHHhhhHHH
Confidence 77777777777766665543
|
|
| >PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0032 Score=64.87 Aligned_cols=244 Identities=17% Similarity=0.202 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHhhhcCc--CCCchhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccC
Q 039800 99 LCALLSAFCYTEFAVDMP--VAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVD 176 (576)
Q Consensus 99 l~~~~~a~~~~el~~~~p--~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (576)
+++.+..+.+-|++.|+- +.-+..+-.++.+||.+++.......+........+..+.+.-++.+++.+..
T Consensus 20 ll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g~~~~------- 92 (358)
T PF01566_consen 20 LLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFGIPLW------- 92 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcH-------
Confidence 344555566666666665 23367777788899999888887777777777777777666666665543321
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc--CCCC-CCCC----CCCchhHHH
Q 039800 177 GLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK--DPKN-PSGF----FPYGAKGVF 249 (576)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~--~~~~-~~~~----~~~g~~~~~ 249 (576)
....+..+...++.....+..+++++++..+..++.+.++...+.. ++.. .+++ .|. ..++.
T Consensus 93 ----------~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~-~~~~~ 161 (358)
T PF01566_consen 93 ----------IWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPG-PGSLL 161 (358)
T ss_pred ----------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcc-hhHHH
Confidence 2222233333333332345577777777777666654444444433 2211 1222 222 12222
Q ss_pred HHHHHHHHHHhhhhhHhhhh---hhhcCcC---Cc-hhhHHHHHHHHHHHHHHHHHHHHH----hcc-cC-CcCCCCchH
Q 039800 250 NGAAMVYLSYIGYDAVSTMA---EEVKNPV---KD-IPIGVSGSVIIVTVLYCLMAASMS----MLM-PY-DMIDAEAPF 316 (576)
Q Consensus 250 ~~~~~~~~~f~G~e~~~~~~---~E~k~p~---r~-~p~ai~~~~~~~~i~y~~~~~~~~----~~~-~~-~~~~~~~p~ 316 (576)
..+...-.....++...+-+ |+-.+.+ ++ --|....-..+..++..+.+.++. ... +. .+.++....
T Consensus 162 ~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~~ 241 (358)
T PF01566_consen 162 FAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQA 241 (358)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 22222222233333222211 2221121 11 122222223333233333222221 112 11 123334466
Q ss_pred HHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 039800 317 SGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIG 361 (576)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 361 (576)
.+.++. ..|.++...++.++.+.+.+++..+...+.++.+.+.-
T Consensus 242 ~~~L~~-~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 242 AQALEP-LLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHH-hcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 777875 66757899999999999999999998888888877655
|
The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane |
| >TIGR02711 symport_actP cation/acetate symporter ActP | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.026 Score=61.64 Aligned_cols=281 Identities=14% Similarity=0.107 Sum_probs=138.2
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHH-HHHHHHHHhhhcCcCCCchhHHHHHHhc-
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCAL-LSAFCYTEFAVDMPVAGGAFSYLRVTFG- 130 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~-~~a~~~~el~~~~p~~Gg~y~~~~~~~g- 130 (576)
.|+++++.......+..++...|...+..... .|...++ +.++..+.. ...+.+++--++.- .-...+|.++.|+
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~-~~~g~~~~~~i~~~~~a~~lrr~g-~~T~~d~l~~Rf~s 142 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLI-YSLGFLVGWPIILFLIAERLRNLG-RYTFADVASYRLKQ 142 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHH-HHHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHHHcCC
Confidence 47788887765555666666555554444333 4544222 122333332 23344455444433 2467888888887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 131 EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 131 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
|....+.+....+..+..........+..++.+++.+. + ..+.+..++...+...-|.|.....
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi~~--~--------------~~iii~~~i~~~Yt~~GGm~av~~t 206 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNY--H--------------VAVVLVGILMVMYVLFGGMLATTWV 206 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--H--------------HHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 55677777666655566666667777777777776432 1 0122222333444556688877777
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---------------CCCCCCCCCCCch-hHHHHHHHHHHHHHhhhhhHhhhhhh---
Q 039800 211 NMILTVLHILFIAFVILMGFWK---------------DPKNPSGFFPYGA-KGVFNGAAMVYLSYIGYDAVSTMAEE--- 271 (576)
Q Consensus 211 ~~~~~~~~l~~~~~~~i~~~~~---------------~~~~~~~~~~~g~-~~~~~~~~~~~~~f~G~e~~~~~~~E--- 271 (576)
+.+-..+.++..+++.+....+ +++....+.+.+. ..-...+...+....|.-...|....
T Consensus 207 d~iQ~~im~~g~i~~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~P~~~~R~~t 286 (549)
T TIGR02711 207 QIIKAVLLLFGATFMAFMVMKSVGFSFNTLFKEAMAVHPKGVAIMSPGGLVSDPISALSLGLGLMFGTAGLPHILMRFFT 286 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHHHHHHHHhcCCchhheeeee
Confidence 7776666655544433322211 1111111112111 00111111111111222222333332
Q ss_pred hcCcCCchhhHHHHHHHHHHHHHHHHHHH-HH--hcccCC-cC-C--------CCchHHHhhccCCCChhHHHHHHHHHH
Q 039800 272 VKNPVKDIPIGVSGSVIIVTVLYCLMAAS-MS--MLMPYD-MI-D--------AEAPFSGAFSGKSDGWKWVSNVIGVGA 338 (576)
Q Consensus 272 ~k~p~r~~p~ai~~~~~~~~i~y~~~~~~-~~--~~~~~~-~~-~--------~~~p~~~~~~~~~~g~~~~~~~~~~~~ 338 (576)
.|| .|+..|+..++......+|+...+. +. ...+++ +. + .+........ ..++.++..++...+
T Consensus 287 aks-~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~glv~A~~ 363 (549)
T TIGR02711 287 VSD-AKEARKSVFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLAN--AVGGNLFLGFISAVA 363 (549)
T ss_pred cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHH--HHccHHHHHHHHHHH
Confidence 366 4688888888877666666544322 11 122211 11 0 0111222223 333356666777777
Q ss_pred HHHHHHHHHHHHhhHHH
Q 039800 339 SFGILTSLLVAMLGQAR 355 (576)
Q Consensus 339 ~~~~~~~~~~~~~~~sR 355 (576)
+.+.+++..+.+++.|-
T Consensus 364 ~AA~mST~~s~l~a~st 380 (549)
T TIGR02711 364 FATILAVVAGLTLAGAS 380 (549)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777666663
|
Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits. |
| >PRK12488 acetate permease; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.045 Score=59.76 Aligned_cols=156 Identities=14% Similarity=0.093 Sum_probs=93.6
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHH-HHHHHHHhhhcCcCCCchhHHHHHHhc-
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALL-SAFCYTEFAVDMPVAGGAFSYLRVTFG- 130 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~-~a~~~~el~~~~p~~Gg~y~~~~~~~g- 130 (576)
.|+++++.......+..+++..|...+..... .|...++ +.++....+. ..+.+++--++.. .-..++|.++.||
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g-~~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLG-KYTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCC-CcchHHHHHHHcCC
Confidence 47899999987777777887777665544444 4544322 2333333322 2333444444333 2468889998888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 131 EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 131 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
|....+.+....+..+..........+..++.+++.+.. ..+.+..++...+...-|.|.....
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi~~~----------------~~iii~~~i~~~Yt~~GGm~av~~t 206 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGISYL----------------YAVVIVGALMVLYVTFGGMLATTWV 206 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----------------HHHHHHHHHHHHHHhccchhHHHHH
Confidence 567888887777776777777777777777777664321 0122222233444456688887777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039800 211 NMILTVLHILFIAFVIL 227 (576)
Q Consensus 211 ~~~~~~~~l~~~~~~~i 227 (576)
+.+-..+.++..+++.+
T Consensus 207 d~iQ~~im~~~~i~~~~ 223 (549)
T PRK12488 207 QIIKAVLLLSGTSFMAF 223 (549)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77766666555544433
|
|
| >PRK00701 manganese transport protein MntH; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.042 Score=57.94 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhhcCc-CCC-chhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 039800 99 LCALLSAFCYTEFAVDMP-VAG-GAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGV 166 (576)
Q Consensus 99 l~~~~~a~~~~el~~~~p-~~G-g~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (576)
+++.+....+.|++.|.- .+| |..+-.++.+|+.++++......+........+..+.+.-++.+++.
T Consensus 72 lls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gi 141 (439)
T PRK00701 72 LLSNLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGI 141 (439)
T ss_pred HHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344445556677777766 334 78888899999988887665555555666666665555555555543
|
|
| >TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.058 Score=59.00 Aligned_cols=148 Identities=9% Similarity=0.064 Sum_probs=88.6
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHH---HHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHh
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIV---ISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTF 129 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~---~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 129 (576)
.|+++++.......+..+++..+...+..... .|.... ++|.++ ....++.+++.-++.. .-..++|.++.|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~-~~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGG---YVLLALLLAPYLRKFG-KYTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHH---HHHHHHHHHHHHHHCC-CccHHHHHHHHh
Confidence 47799998887777777777666655443333 454321 222222 2234566666666664 347999999999
Q ss_pred ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhH
Q 039800 130 GE-FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSS 208 (576)
Q Consensus 130 g~-~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (576)
|+ ....+++....+..+...+......+..++.+++.+... .+.+..++...+...-|.|...
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~----------------~iii~~~i~~iYt~~GG~~aV~ 169 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEVDFET----------------GVFIGMAIVFFYAVLGGMKGVT 169 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----------------HHHHHHHHHHHHHHhhhHHHHH
Confidence 84 467777777666667777777777777777777643211 1222222334444556777766
Q ss_pred HHHHHHHHHHHHH
Q 039800 209 VVNMILTVLHILF 221 (576)
Q Consensus 209 ~~~~~~~~~~l~~ 221 (576)
....+-..+.++.
T Consensus 170 ~TD~iQ~iim~ig 182 (552)
T TIGR03648 170 WTQVAQYIVLIVA 182 (552)
T ss_pred HHHHHHHHHHHHH
Confidence 6665555544443
|
This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused. |
| >COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.041 Score=57.01 Aligned_cols=127 Identities=16% Similarity=0.231 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhcCc-CCC-chhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039800 87 GPAIVISYAIAGLCALLSAFCYTEFAVDMP-VAG-GAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAI 164 (576)
Q Consensus 87 G~~~~~~~li~~l~~~~~a~~~~el~~~~p-~~G-g~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (576)
|..--+..+..-++.-+.++..-|++.+.- .+| |.-+-.++.++|.+++.......+..+.+.-.+..+.+--++.++
T Consensus 43 Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 43 GAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 433334444455666667777778887776 334 577888888999999988877777777777777777777777776
Q ss_pred CCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039800 165 GVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK 232 (576)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 232 (576)
+.+. .++.++..+..++.+.+- ...+++.+...+.+...+.+....+.+
T Consensus 123 ~ip~------------------~~g~iItav~~~iil~~~-~~r~~E~~v~~l~~~~~i~~~~~~~~~ 171 (416)
T COG1914 123 GIPL------------------IIGAVITAVDVLIILLLK-GYRLLERVVLILGLVLVILFVYVAFVA 171 (416)
T ss_pred CChH------------------HHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5432 233333333333332222 566777777777776666666655555
|
|
| >TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.044 Score=57.01 Aligned_cols=198 Identities=13% Similarity=0.080 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 039800 89 AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPT 168 (576)
Q Consensus 89 ~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (576)
.++++.+++.++........+..+.+... ......+..||++.+.+......+..+...+.+....++.++..++...
T Consensus 30 ~ai~aiilG~~i~~~~~~l~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~ 107 (386)
T TIGR02358 30 RGLLAILLGHLVGVLLLSAAGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF 107 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35556666665555555455555554432 4777888999999999888888888888888888888887777664211
Q ss_pred cccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCCCCCCchhH
Q 039800 169 AKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK-DPKNPSGFFPYGAKG 247 (576)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~~~~~g~~~ 247 (576)
+.. . ......++..+.......|.|...+++.+...+..+..+........+ +.... ..+.+..+
T Consensus 108 ~~~--------~----~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~s 173 (386)
T TIGR02358 108 GEE--------S----PMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSEL--WNRAGDMS 173 (386)
T ss_pred CCC--------c----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh--cCCCCCcc
Confidence 100 0 012222333345666678999999999999888777766555444443 22111 11111122
Q ss_pred HHHHHHHHHHH-HhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 039800 248 VFNGAAMVYLS-YIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSM 303 (576)
Q Consensus 248 ~~~~~~~~~~~-f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~ 303 (576)
+..++....-. -.+....+.++...|+|+ +.-++...+..+...+..+.-.....
T Consensus 174 ~~~~~~~~~~~~~swa~~~~DysRy~k~~~-~~~~~~~~G~~i~~~~~~~~G~~~~~ 229 (386)
T TIGR02358 174 FAVAVELVIAMPLSWLPLIADYTRFARNPR-HVFLGTVLGYFIGSCWMYFLGLAVTL 229 (386)
T ss_pred HHHHHHHHHHHHHHHHHHccchhhhcCCCc-ceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222211 112223556667777754 45567666666665555554444333
|
On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate. |
| >PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0052 Score=65.04 Aligned_cols=221 Identities=14% Similarity=0.162 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCCCCCCC---------CchhHHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK---DPKNPSGFFP---------YGAKGVFNGAAM 254 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~---~~~~~~~~~~---------~g~~~~~~~~~~ 254 (576)
.+++++++....+.-+|. .++...+..+.++-++.+...|+.+ +++-+..++| +++.+ +..+..
T Consensus 134 ~it~~ILv~LF~iQ~~GT---~~ig~~FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~~~~~~-~~~LG~ 209 (534)
T PF02705_consen 134 PITIAILVGLFAIQRFGT---AKIGKLFGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIRNGWIG-FFVLGA 209 (534)
T ss_pred hHHHHHHHHHHHHHhhhh---hHHHHHHhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHHcCCch-hhhcch
Confidence 455556666666666664 4555557777777666666777665 4443444444 23333 233446
Q ss_pred HHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHH
Q 039800 255 VYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVI 334 (576)
Q Consensus 255 ~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 334 (576)
++.+.+|-|+.- |+-=+-.+|++.++-..-+.-+.++.=+..-+.....|.+ ..+|+....- +|..+-+
T Consensus 210 V~L~~TGaEALy--ADmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~---~~npFf~~~P------~~~~~p~ 278 (534)
T PF02705_consen 210 VFLCVTGAEALY--ADMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEA---VSNPFFLLIP------EWLLWPM 278 (534)
T ss_pred HHHHHhhHHHHH--hhhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcch---hhhHHHHHhH------HHHHHHH
Confidence 778889999654 3333444566666655534444333333333333322311 2455554433 4555555
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchh-hhhhcCCC-C---CchhHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 039800 335 GVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAW-FARVHPKT-S---TPVNASAFLGIFTAAIALFTDLTVLLNLVSI 409 (576)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~-~~~~~~~~-~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~ 409 (576)
.+.+.++..-+..+.+.++=-+....-+-|.+|+. ..+.+++. | .|..-.+++..+..+...+.+-+.+.+...+
T Consensus 279 ~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGi 358 (534)
T PF02705_consen 279 VILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGI 358 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHH
Confidence 55555554444444444444555556677899952 44444333 2 5766555555555555556788888888888
Q ss_pred HHHHHHHHHHHHH
Q 039800 410 GTLFVFYMVANAV 422 (576)
Q Consensus 410 ~~~~~~~~~~~~~ 422 (576)
+......++.+.+
T Consensus 359 AVt~tM~iTT~L~ 371 (534)
T PF02705_consen 359 AVTGTMLITTILL 371 (534)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777665543
|
; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane |
| >PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.077 Score=56.33 Aligned_cols=348 Identities=12% Similarity=0.098 Sum_probs=160.3
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhch-HHhhh--------hccch--H------------HHHHHHHHHHHHHHHHHHH
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTT-GRASR--------LNAGP--A------------IVISYAIAGLCALLSAFCY 108 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~-~~~~~--------~~~G~--~------------~~~~~li~~l~~~~~a~~~ 108 (576)
-|.+++.++.++|.++.-+|+|+.+-. ...+. ...+. + .+.+|.+-++..+.+++.+
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~ 150 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFF 150 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheee
Confidence 345789999999999999998876532 11100 00111 0 1445677777777788777
Q ss_pred HHhhhcCcCCCchhHHHHHHhchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhCCCCcccccccCCCCCCCch
Q 039800 109 TEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSN----AAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNE 184 (576)
Q Consensus 109 ~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (576)
..-.....-+...+--..+...+..|.+.-....++.+.+. +......+.-++..++.+.+...
T Consensus 151 y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~------------ 218 (485)
T PF02028_consen 151 YNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGL------------ 218 (485)
T ss_dssp HTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHH------------
T ss_pred eecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHH------------
Confidence 76443333344444444433333445544444444444433 33333444455555655433221
Q ss_pred hhHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHHHHHHhhcc------------CCCCC-------CCCCCCc
Q 039800 185 IDVLAVAVVLVITFVICYST-RDSSVVNMILTVLHILFIAFVILMGFWK------------DPKNP-------SGFFPYG 244 (576)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~l~~~~~~~i~~~~~------------~~~~~-------~~~~~~g 244 (576)
...+.+++.++.+.-...|+ |-.+++.++-..+.++.++.+.+.+-.. ..+|+ .++.+.+
T Consensus 219 ~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~~~~~~ 298 (485)
T PF02028_consen 219 QIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTDPFGNSG 298 (485)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Confidence 11334444445555555565 3355555555555555554444444222 00111 2333344
Q ss_pred -hhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHh-ccc-----CCcC---CC--
Q 039800 245 -AKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSM-LMP-----YDMI---DA-- 312 (576)
Q Consensus 245 -~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~-~~~-----~~~~---~~-- 312 (576)
|.+-...+.-+.|.=.+--....++.=.|. |+++.-+...++...+..++.-..+.. ... ..++ +.
T Consensus 299 ~w~~~WTvFYwaWWiawaPfvG~FiArISkG--RTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g 376 (485)
T PF02028_consen 299 QWPQDWTVFYWAWWIAWAPFVGLFIARISKG--RTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQG 376 (485)
T ss_dssp HHHHHTHHHHHHHHHHTHHHHHHHHHHCTTT--SBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHhhhcCC--cCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcc
Confidence 544444444444444444444455555554 788555555555444433322222111 111 1111 01
Q ss_pred -CchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHH--HH
Q 039800 313 -EAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFL--GI 389 (576)
Q Consensus 313 -~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~--~~ 389 (576)
+....+.++ .+. +..++....++.++....+..-+.+..+-.++.+| +.+| ..+.+..|.. ++
T Consensus 377 ~~~a~~~~l~--~lP---~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~ep--~~~~ri~W~~~~~~ 442 (485)
T PF02028_consen 377 PEAALFAFLE--QLP---LSKILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEEP--PRWLRIFWGLIIGA 442 (485)
T ss_dssp HHHHHHHHHH--TST---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSSS---HHHHHHHHHHHHH
T ss_pred hhhHHHHHHH--Hhh---HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCCC--chHHHHHHHHHHHH
Confidence 123444555 332 23344444444455555556666777777777665 1122 2233333332 33
Q ss_pred HHHHHHHhhcHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039800 390 FTAAIALFTDLT---VLLNLVSIGTLFVFYMVANAVIYRRY 427 (576)
Q Consensus 390 ~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~r~ 427 (576)
++..+...+..+ .+..+.++-..+..++.+.++++.-|
T Consensus 443 ~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~ 483 (485)
T PF02028_consen 443 LAIVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALK 483 (485)
T ss_dssp HHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 343444444444 44444444445555555666665433
|
The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B. |
| >COG0733 Na+-dependent transporters of the SNF family [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.092 Score=54.11 Aligned_cols=285 Identities=12% Similarity=0.078 Sum_probs=139.3
Q ss_pred ChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCc-CCCchhHHHHHHhchhHHH
Q 039800 57 RWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMP-VAGGAFSYLRVTFGEFAAF 135 (576)
Q Consensus 57 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p-~~Gg~y~~~~~~~g~~~g~ 135 (576)
+....+..+.|+-+|.|-.-..+.....++|.+-++-|++..+. .-.-+...|++--.- +.+..-.|-+.. +++...
T Consensus 10 SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~-~GiPlli~Ef~iGr~~~~~~~~a~~~l~-~~~~~~ 87 (439)
T COG0733 10 SRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLL-VGIPLLLAEFAIGRRGRKNAVGAFRKLA-PKKKWE 87 (439)
T ss_pred hHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHH-HhHHHHHHHHHhhhhcCCChhHHHHHhc-cCccch
Confidence 44555667778889999888888888776776644444433222 222233344432222 222222232222 122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchh-h
Q 039800 136 LTGSNLILEYVMSNAAVARGFA-------SYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRD-S 207 (576)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 207 (576)
..||.-.+........+....+ ..+...++.+.+.......+..++.......-.++.++..++..+|++. .
T Consensus 88 ~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GI 167 (439)
T COG0733 88 WIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGI 167 (439)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhH
Confidence 2233222222222222221111 1111111111110000001111111111233345556666777888865 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC----------CCCCCCCCCchhHHHHHHHHHHHHH-hhhhhHhhhhhhhcCcC
Q 039800 208 SVVNMILTVLHILFIAFVILMGFWKDP----------KNPSGFFPYGAKGVFNGAAMVYLSY-IGYDAVSTMAEEVKNPV 276 (576)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~i~~~~~~~----------~~~~~~~~~g~~~~~~~~~~~~~~f-~G~e~~~~~~~E~k~p~ 276 (576)
.|.+.++.....+.++++.+-.+..+. .+++.+. +...+..+.-.++|+. .|+.....++.-.++ +
T Consensus 168 Ek~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~--~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~ 244 (439)
T COG0733 168 EKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLT--DPKVWLAALGQAFFSLSLGFGIMITYSSYLSK-K 244 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcC--chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-c
Confidence 889998888888888777776665411 0111111 1455677777888887 588888788877776 5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHh---cccCCcCCCC-----chHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHH
Q 039800 277 KDIPIGVSGSVIIVTVLYCLMAASMSM---LMPYDMIDAE-----APFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLV 348 (576)
Q Consensus 277 r~~p~ai~~~~~~~~i~y~~~~~~~~~---~~~~~~~~~~-----~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 348 (576)
.|+++.-....+....+-++.-+.+.. ....+ .+++ .-+++++.| .--+.....+...+...+.++|..+
T Consensus 245 ~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~-~~~GpgL~Fi~LP~if~~-mp~G~~~~~lFFl~l~fAalTS~iS 322 (439)
T COG0733 245 SDLVSSALSIVLLNTLISLLAGLVIFPALFSFGAD-ASQGPGLVFIVLPAVFNQ-MPLGTLFGILFFLLLLFAALTSAIS 322 (439)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCeeehhHHHHHHHh-CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 688887777766666555444433322 22222 1111 146778884 2222344444444444455544444
|
|
| >COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.086 Score=53.58 Aligned_cols=318 Identities=15% Similarity=0.173 Sum_probs=153.5
Q ss_pred HHHHHHhhhhhhhhHHhchHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhchhHHHH
Q 039800 60 DLVCFGIGGMVGAGVFVTTGRASRLNAGPA---IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFL 136 (576)
Q Consensus 60 ~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~ 136 (576)
..=++.++.-.|.|-..-|+..-.. +|.. +.+++++.++..=..+..- .-..||.+.=..+..||..|.+
T Consensus 9 ~~GfmLFalFFGAGNlIFPP~LG~~-aG~~~~~A~lGFllTgVglPlLgiIa------~a~~g~~~~~l~~~i~~~fg~~ 81 (431)
T COG1114 9 ALGFMLFALFFGAGNLIFPPMLGLH-AGEHVWPAILGFLLTGVGLPLLGIIA------VALYGGGVESLATRIGPWFGVL 81 (431)
T ss_pred HHHHHHHHHHhcCCCccCChhhhhh-cCccHHHHHHHHHHHHhhHHHHHHHH------hhccCCCHHHHhhhccchHHHH
Confidence 3334555555677777666654433 6653 4556666665432222211 1234554444455567777665
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhhCCCCcccccccCCCCC-CCchhhHHHHHHHHHHHHHHHhcchhhHHHHHH
Q 039800 137 TGSNLILEYVMSNAAV--ARGFASYFGTAIGVPTAKWRLKVDGLPD-GFNEIDVLAVAVVLVITFVICYSTRDSSVVNMI 213 (576)
Q Consensus 137 ~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 213 (576)
..-.. |....+.. .++.......... |-..+ +.....+..+++..+..++.+..-|...++.++
T Consensus 82 f~~~i---yLsIGPffAiPRt~~vsfe~~i~----------p~~~~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~ 148 (431)
T COG1114 82 FAIAI---YLSIGPFFAIPRTGAVSFEVGIS----------PLLGDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKF 148 (431)
T ss_pred HHHHH---HHHhcccccCCcccchhHHHhhh----------cccCCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 54321 11111111 1111111100000 11111 111133567777788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcc-CC--CCC-CCCCCCc-hhHHHHHH----HHHHHHHhhhhhHhhhhhhhcCcCCchhhHHH
Q 039800 214 LTVLHILFIAFVILMGFWK-DP--KNP-SGFFPYG-AKGVFNGA----AMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVS 284 (576)
Q Consensus 214 ~~~~~l~~~~~~~i~~~~~-~~--~~~-~~~~~~g-~~~~~~~~----~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~ 284 (576)
++...++.++.+.+..+.+ +. +.. ....+.. ..|+..|- ..+..+|...-.-+.=..-.+++ |+..|-..
T Consensus 149 LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~~~~~~~~ 227 (431)
T COG1114 149 LTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-KQIIKYTI 227 (431)
T ss_pred HhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHH
Confidence 9999999998888887766 11 111 1111111 11222221 12334444333333323333443 34444444
Q ss_pred HHHHHHHHHHHHHHHHH--HhcccCCcC---CCCchHH-HhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039800 285 GSVIIVTVLYCLMAASM--SMLMPYDMI---DAEAPFS-GAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMC 358 (576)
Q Consensus 285 ~~~~~~~i~y~~~~~~~--~~~~~~~~~---~~~~p~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 358 (576)
.+-++..+.-.+..... .+..+.+.. ++..... +.-++ .+| +.+..++.+.+.++|+++..+.+.+++..
T Consensus 228 ~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~-~fG-~~G~~lL~~iv~lACLTTaiGLi~a~aef-- 303 (431)
T COG1114 228 KAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQH-LFG-SYGSILLGLIVFLACLTTAVGLIVACAEF-- 303 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHH-Hhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 44433333322222222 222222211 2222222 23332 555 67788999999999999999988888766
Q ss_pred HHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 039800 359 VIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVF 415 (576)
Q Consensus 359 a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 415 (576)
|+|.-||-.-..++++ ..+++.++.- ..++.+..+..-...+.|
T Consensus 304 -----------F~~~~p~~SY~~~v~i-f~i~sflvan-~GL~~Ii~isvPvL~~iY 347 (431)
T COG1114 304 -----------FSKLVPKLSYKTWVII-FTLISFLVAN-LGLEQIIKISVPVLTAIY 347 (431)
T ss_pred -----------HHHhcccccHHHHHHH-HHHHHHHHHH-hhHHHHHHHHHHHHHHHh
Confidence 4444442222222222 2333333332 245666666554445555
|
|
| >KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.019 Score=59.58 Aligned_cols=243 Identities=13% Similarity=0.138 Sum_probs=130.4
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
+++-+.+..+.-....++|+|++..|... .. .|-. .++.....+++.....+.+.+.+++.++. ....-.+..+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~af-k~-~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAF-KT-AGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHH-HH-hcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 45567888888888999999999776654 33 5643 45556667777788888888888888866 455555667776
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhCCCCcccccccCCCCCCCch-hhHHHHHHHHHHHHHHHhcchh
Q 039800 132 FAAFLTGSNLILEYVMSNAAVARGFAS----YFGTAIGVPTAKWRLKVDGLPDGFNE-IDVLAVAVVLVITFVICYSTRD 206 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~ 206 (576)
..........- .+..++.++.....+ .....+..+...-+ . .+.+. ..+....++.-.++.+-. .
T Consensus 80 ~g~~~~~v~~~-~~~~g~i~yliiigd~~p~~~~~~~~~~~~~~~-----~-~~~~~~ill~~~~~i~pLsl~k~l---~ 149 (411)
T KOG1305|consen 80 LGKVDAAVAVK-CFGVGMVSYLIIIGDLLPGFIRSLFLDEEGGSH-----Y-LDRNFLILLVLLFIILPLSLLKNL---D 149 (411)
T ss_pred CceeeehhhHH-hhhccceEEEEEEccccchhhhhcccccccccc-----c-ccceeEeehHHHHHHHHHHHHHhh---h
Confidence 54222111110 000000000000001 11111111100000 0 00011 112222222222222211 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc-CC--CCCCCCCCCch--hHHHHHHHHHHHHHhhhhhHhhhhhhhcCcC-Cchh
Q 039800 207 SSVVNMILTVLHILFIAFVILMGFWK-DP--KNPSGFFPYGA--KGVFNGAAMVYLSYIGYDAVSTMAEEVKNPV-KDIP 280 (576)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~~~i~~~~~-~~--~~~~~~~~~g~--~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~-r~~p 280 (576)
.-+.....+...++.++.+.+..... .. .......+++. .+++.+++..+++|...+.....-.|+|||+ |++-
T Consensus 150 ~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~ 229 (411)
T KOG1305|consen 150 SLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQ 229 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHH
Confidence 22233333333333333333322222 11 11122233333 5789999999999999999999999999985 5788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 039800 281 IGVSGSVIIVTVLYCLMAASMSMLMPYD 308 (576)
Q Consensus 281 ~ai~~~~~~~~i~y~~~~~~~~~~~~~~ 308 (576)
+....+...+.++|......-....+.+
T Consensus 230 ~v~~~~~~~~~~iy~~~g~~GYL~Fg~~ 257 (411)
T KOG1305|consen 230 RVSNIAIILATLIYLLTGLFGYLTFGDL 257 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheeccc
Confidence 8888888888899988887665555543
|
|
| >PLN00151 potassium transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.032 Score=61.38 Aligned_cols=218 Identities=17% Similarity=0.147 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCCCCCCC---------chhHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----DPKNPSGFFPY---------GAKGVFNGAA 253 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~----~~~~~~~~~~~---------g~~~~~~~~~ 253 (576)
.+++++++.+..+--+| ..|+...+..+.++-++.+...|+.. ++.-+..++|. +..| +..+.
T Consensus 276 ~Is~~ILv~LF~~Q~~G---T~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~g-w~~LG 351 (852)
T PLN00151 276 MISVAFLVILFSVQRFG---TSKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKA-WSALG 351 (852)
T ss_pred hHHHHHHHHHHHHHhcc---chhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCce-EEEec
Confidence 45555666666666666 45555666666666666666666665 35545555552 2111 11233
Q ss_pred HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHH
Q 039800 254 MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNV 333 (576)
Q Consensus 254 ~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 333 (576)
.++.+.+|-|+.- |+-=.-.+|.+..|-..-+.=+.++.=+..-+...-.| ++ ..+||....- +++.+-
T Consensus 352 gVvLciTGaEALf--ADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p-~~--~~npFy~svP------~~~~wP 420 (852)
T PLN00151 352 GCVLCATGSEAMF--ADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNP-DS--AEQIFFSSVP------SSLFWP 420 (852)
T ss_pred ceeeeeccchhhh--cccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCc-cc--ccCcHHHhCC------chhHHH
Confidence 4567788888643 33334445566555554444444433333333333222 21 2445443332 344444
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCch-hhhhhcCCC----CCchhHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 039800 334 IGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPA-WFARVHPKT----STPVNASAFLGIFTAAIALFTDLTVLLNLVS 408 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~~----~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 408 (576)
+.+.+.++..-+..+.+.++=-+....-+-|.+|+ +.-+++++. -.|..-.+++..+..+...+.+.+.+.+...
T Consensus 421 ~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYG 500 (852)
T PLN00151 421 VFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYG 500 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhh
Confidence 44444444333333333333334444445679994 244444332 2566655555444444555677888888888
Q ss_pred HHHHHHHHHHH
Q 039800 409 IGTLFVFYMVA 419 (576)
Q Consensus 409 ~~~~~~~~~~~ 419 (576)
++.....+++.
T Consensus 501 iAV~~vM~iTT 511 (852)
T PLN00151 501 IAEVGVMMVST 511 (852)
T ss_pred hhhhhhhhHHH
Confidence 77766665543
|
|
| >PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0091 Score=63.48 Aligned_cols=171 Identities=12% Similarity=0.057 Sum_probs=87.4
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhc
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGP-AIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFG 130 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g 130 (576)
-+|+.++++.+.+=++..+....+..-.......-+. .++++.+++.++........+.++.+.-. ......+..||
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl--~~~v~sR~~FG 82 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGL--PTMVLSRASFG 82 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC-----HHHHTTTTS-
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--CchhcchhccC
Confidence 3567788888888777665544443322221111122 25666666665554444444555544422 35666678999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCC-CCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 131 EFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDG-LPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 131 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
...+.+......+..+...+.+....++.+...++...+.+. ..++ .........+..+++.++.......|.+...+
T Consensus 83 ~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l~~ 161 (440)
T PF02133_consen 83 YRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFL-WIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKALRR 161 (440)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------HH-----------HHHHHHHHHHHHHHCTHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcch-hhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHHHh
Confidence 988888888888888888888888888888776654321100 0000 00000001122222233444456677777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 039800 210 VNMILTVLHILFIAFV 225 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~ 225 (576)
++.+...+.....+..
T Consensus 162 ~~~~~~~~~~~~~~~~ 177 (440)
T PF02133_consen 162 LAVIAAPILLVVFIGM 177 (440)
T ss_dssp HHHCCHHHHHHHHHHH
T ss_pred HHhhhhHHHHhhhhhe
Confidence 7777666554443333
|
Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A. |
| >PLN00149 potassium transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.072 Score=58.71 Aligned_cols=221 Identities=14% Similarity=0.133 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCCCCCCC---------chhHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----DPKNPSGFFPY---------GAKGVFNGAA 253 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~----~~~~~~~~~~~---------g~~~~~~~~~ 253 (576)
.+++++++....+--+| ..|+...+..+.++-++.+...|+.. ++.-+..++|. +..| +..+.
T Consensus 200 ~is~~ILv~LF~~Q~~G---T~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g-~~~LG 275 (779)
T PLN00149 200 PVACIILIGLFALQHYG---THRVGFLFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGG-WMSLG 275 (779)
T ss_pred HHHHHHHHHHHHHhccc---cHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCce-eEeec
Confidence 35555555566666666 55666667777777777777777665 45555566552 2211 22233
Q ss_pred HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHH
Q 039800 254 MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNV 333 (576)
Q Consensus 254 ~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 333 (576)
.++.+.+|-|+.- |+-=+-.+|.+..|-..-+.=+.++.=+..-+...-.|...-+-.+||....- +++.+-
T Consensus 276 gV~L~iTG~EALy--ADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~iP------~~~~~P 347 (779)
T PLN00149 276 GILLCITGSEAMF--ADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVSVP------EKLRWP 347 (779)
T ss_pred chhhcccchhhhh--hcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHhCC------chhHHH
Confidence 4667888999643 33334445666666555444444443333333333223211122345553332 344444
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchh-hhhhcCCC----CCchhHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 039800 334 IGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAW-FARVHPKT----STPVNASAFLGIFTAAIALFTDLTVLLNLVS 408 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~-~~~~~~~~----~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 408 (576)
+.+.+.++..-+..+.+.++=.+....-+-|.+|+. .-+++++. -.|..-.+++..+..+...+.+.+.+.+...
T Consensus 348 ~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYG 427 (779)
T PLN00149 348 VLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASG 427 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhh
Confidence 444444444433334444443444444556899942 44444332 2566555554444444455677888888888
Q ss_pred HHHHHHHHHHH
Q 039800 409 IGTLFVFYMVA 419 (576)
Q Consensus 409 ~~~~~~~~~~~ 419 (576)
++.....+++.
T Consensus 428 iAV~~vM~iTT 438 (779)
T PLN00149 428 LAVITVMLVTT 438 (779)
T ss_pred hhhehHHHHHH
Confidence 77766665543
|
|
| >PLN00150 potassium ion transporter family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.05 Score=59.85 Aligned_cols=218 Identities=16% Similarity=0.188 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCCCCCCC---------chhHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----DPKNPSGFFPY---------GAKGVFNGAA 253 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~----~~~~~~~~~~~---------g~~~~~~~~~ 253 (576)
.+++++++....+--+| ..|+...+..+.++-++.+...|+.. ++.-+..++|. +..| +..+.
T Consensus 216 ~is~~ILv~LF~iQ~~G---T~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~LG 291 (779)
T PLN00150 216 IISCVILVILFSLQRFG---THKVSFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQG-WESLG 291 (779)
T ss_pred hhHHHHHHHHHHHHhcc---chhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCce-EEEec
Confidence 45555566666666666 45666667777777777777777665 35545555552 2221 11233
Q ss_pred HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHH
Q 039800 254 MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNV 333 (576)
Q Consensus 254 ~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 333 (576)
.++.+.+|-|+.- |+-=+-.+|.+..|-..-+.=+.++.=+..-+...-.| + +..+||....- +++.+-
T Consensus 292 ~V~L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p-~--~~~npFf~~iP------~~~~~P 360 (779)
T PLN00150 292 GIVLCMTGTEAMF--ADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHM-E--DVNDPFYRSLP------KPIYWP 360 (779)
T ss_pred ceeeeecchhhhh--ccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCc-c--cccCcHHHhCC------chhHHH
Confidence 4567788888643 33334445566665554444444332233333332222 1 12445543332 344444
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCch-hhhhhcCCCC----CchhHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 039800 334 IGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPA-WFARVHPKTS----TPVNASAFLGIFTAAIALFTDLTVLLNLVS 408 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~~~----~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 408 (576)
+.+.+.++..-+..+.+.++=.+....-+-|.+|+ +.-+.+++.+ .|..-.+++..+..+...+.+.+.+.+...
T Consensus 361 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYG 440 (779)
T PLN00150 361 IFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYG 440 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhh
Confidence 44444444443333444444344444455689994 2444443332 566555544444444445577888888888
Q ss_pred HHHHHHHHHHH
Q 039800 409 IGTLFVFYMVA 419 (576)
Q Consensus 409 ~~~~~~~~~~~ 419 (576)
++.....+++.
T Consensus 441 iAV~~vM~iTT 451 (779)
T PLN00150 441 IAVVGVMIITT 451 (779)
T ss_pred hheehhhHHHH
Confidence 77766665543
|
|
| >PRK10745 trkD potassium transport protein Kup; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.29 Score=52.78 Aligned_cols=220 Identities=13% Similarity=0.146 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCCCCCCCC---------chhHHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK---DPKNPSGFFPY---------GAKGVFNGAAM 254 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~---~~~~~~~~~~~---------g~~~~~~~~~~ 254 (576)
.+++++++....+.-+| .+++...++.+.++-++.+.+.|+.+ +++-+..++|. +..+ +..+..
T Consensus 145 pit~~ILv~LF~iQ~~G---T~~vG~~FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~~~~~g-f~~LG~ 220 (622)
T PRK10745 145 PLSIIVLTLLFMIQKHG---TGMVGKLFAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFFLEYKTVS-FFALGA 220 (622)
T ss_pred HHHHHHHHHHHHHhccc---cHHHhhhhhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHhCCCce-EEEecc
Confidence 45555555555666666 55556667777777666666667665 44444444442 2221 112334
Q ss_pred HHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHHH
Q 039800 255 VYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVI 334 (576)
Q Consensus 255 ~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 334 (576)
++.+.+|-|+. +|+-=+-.+|.+.++-..-+.=+.++.=+..-+.....| + ...+||....- +|..+-+
T Consensus 221 V~L~vTGaEAL--YADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p-~--~~~NpFf~~~P------~~~~~p~ 289 (622)
T PRK10745 221 VVLAITGVEAL--YADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNP-E--AIKNPFFLLAP------DWALIPL 289 (622)
T ss_pred eeeeccchHHH--hhccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCc-h--hhcCcHHHhCC------hhHHHHH
Confidence 56777888854 333334445666666555444333332222222222222 1 12456554332 4555555
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCchh-hhhhcCCC-C---CchhHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 039800 335 GVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAW-FARVHPKT-S---TPVNASAFLGIFTAAIALFTDLTVLLNLVSI 409 (576)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~-~~~~~~~~-~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~ 409 (576)
.+.+.++..-+..+.+.++=.+....-+-|.+|+. ..+.+++. | .|..-.+++..+..+...+.+.+.+.+...+
T Consensus 290 viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGi 369 (622)
T PRK10745 290 LILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGI 369 (622)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhh
Confidence 45544444433334444444444455567899952 44444332 2 5655544444444444445677778887777
Q ss_pred HHHHHHHHHHHH
Q 039800 410 GTLFVFYMVANA 421 (576)
Q Consensus 410 ~~~~~~~~~~~~ 421 (576)
+......++.+.
T Consensus 370 AVt~tM~iTT~L 381 (622)
T PRK10745 370 AVTGTMVLTSIL 381 (622)
T ss_pred hheeHhHHHHHH
Confidence 766666554443
|
|
| >PRK09950 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=1 Score=48.10 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=20.4
Q ss_pred ccccChHHHHHHHhhhhhhhhHHh
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFV 76 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~ 76 (576)
|.+++.++.++|.++.-+|.|+.+
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllf 104 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLY 104 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHH
Confidence 567999999999999888888765
|
|
| >TIGR00794 kup potassium uptake protein | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.085 Score=57.64 Aligned_cols=220 Identities=15% Similarity=0.186 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCCCCCC---------CchhHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----DPKNPSGFFP---------YGAKGVFNGAA 253 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~----~~~~~~~~~~---------~g~~~~~~~~~ 253 (576)
.+++++++....+--+| ..|+...++.+.++-++.+.+.|+.. +++-+..++| ++..+ +..+.
T Consensus 170 ~it~~ILv~LF~iQ~~G---T~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~-~~~LG 245 (688)
T TIGR00794 170 PISCIILVLLFLIQRFG---TAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVG-WVSLG 245 (688)
T ss_pred hHHHHHHHHHHHHhccc---cHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCce-eeecc
Confidence 45555566666666666 45555566666666666666666655 4444444544 22222 22344
Q ss_pred HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHH
Q 039800 254 MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNV 333 (576)
Q Consensus 254 ~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 333 (576)
.++.+.+|-|+.- |+-=+-.+|.+..+-..-+.-+.++.=+..-+....-| ++ ..+||....- +|..+-
T Consensus 246 ~V~L~iTGaEALy--ADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p-~~--~~NpFf~~~P------~~~~~p 314 (688)
T TIGR00794 246 GVVLSITGVEAMF--ADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHP-EA--IKNPFFLSIP------DWALWP 314 (688)
T ss_pred chhheeccHhhhh--cccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCc-ch--hcCcHHHhCc------hHHHHH
Confidence 4667888988643 33334445666665554444443332223333333222 21 2456553332 455555
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCch-hhhhhcCCC-C---CchhHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 039800 334 IGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPA-WFARVHPKT-S---TPVNASAFLGIFTAAIALFTDLTVLLNLVS 408 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~~-~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 408 (576)
+.+.+.++..-+..+.+.++=.+....-+-|.+|+ ..-+.+++. | .|..-.+++..+..+...+.+.+.+.+...
T Consensus 315 ~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYG 394 (688)
T TIGR00794 315 LFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYG 394 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhh
Confidence 55555555444444444444444455556789995 244444332 2 566655555444445555677888888888
Q ss_pred HHHHHHHHHHHHH
Q 039800 409 IGTLFVFYMVANA 421 (576)
Q Consensus 409 ~~~~~~~~~~~~~ 421 (576)
++.....+++.+.
T Consensus 395 iaVt~tM~iTT~L 407 (688)
T TIGR00794 395 IAVTGTFLVTTCL 407 (688)
T ss_pred hhhhhhhHHHHHH
Confidence 7777666655443
|
Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli. |
| >PLN00148 potassium transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.24 Score=54.72 Aligned_cols=217 Identities=14% Similarity=0.156 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCCCCCCC---------chhHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----DPKNPSGFFPY---------GAKGVFNGAA 253 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~----~~~~~~~~~~~---------g~~~~~~~~~ 253 (576)
.+++++++....+--+| ..|+...+..+.++-++.+...|+.. ++.-+..++|. +..| +..+.
T Consensus 199 ~is~~ILv~LF~vQ~~G---T~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~LG 274 (785)
T PLN00148 199 LLACVILVGLFALQHCG---THRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDG-WISLG 274 (785)
T ss_pred hHHHHHHHHHHHHhccc---cHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCce-EEeec
Confidence 45555555566666666 45566667777777776666666665 45555555552 2222 12233
Q ss_pred HHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCchHHHhhccCCCChhHHHHH
Q 039800 254 MVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNV 333 (576)
Q Consensus 254 ~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 333 (576)
.++.+.+|-|+.- |+-=+-.+|.+.++-..-+.=+.++.=+..-+...-.| ++ ..+||....- ++..+-
T Consensus 275 gV~L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p-~~--~~npFf~~iP------~~~~~P 343 (785)
T PLN00148 275 GILLSITGTEAMF--ADLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNI-PS--IPNSFYDSIP------DPVFWP 343 (785)
T ss_pred chheeccchhhhh--hhccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCc-cc--ccCcHHHhCC------chhHHH
Confidence 4567888999643 33334445666666554444444433333333333222 21 2455553332 344444
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCCCch-hhhhhcCCC----CCchhHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 039800 334 IGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPA-WFARVHPKT----STPVNASAFLGIFTAAIALFTDLTVLLNLVS 408 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~~----~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 408 (576)
+.+.+.++..-+..+.+.++=.+....-+-|.+|+ +.-+.+++. -.|..-.+++..+..+...+.+.+.+.+...
T Consensus 344 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYG 423 (785)
T PLN00148 344 VFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYG 423 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhh
Confidence 44444444443333434333344444455689994 244444333 2566655555544445555667778888877
Q ss_pred HHHHHHHHHH
Q 039800 409 IGTLFVFYMV 418 (576)
Q Consensus 409 ~~~~~~~~~~ 418 (576)
++.....+++
T Consensus 424 iAV~~vM~iT 433 (785)
T PLN00148 424 LACMTVMFIT 433 (785)
T ss_pred hheeeHHHHH
Confidence 7766655544
|
|
| >PRK09928 choline transport protein BetT; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=2.2 Score=46.91 Aligned_cols=24 Identities=4% Similarity=0.165 Sum_probs=19.0
Q ss_pred ccccChHHHHHHHhhhhhhhhHHh
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFV 76 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~ 76 (576)
|.+++.++.++|.++.-+|+|+.+
T Consensus 90 kPefS~~sW~aMLFaAGmGigLmf 113 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDLMF 113 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhhee
Confidence 456888888989888888877654
|
|
| >COG4147 DhlC Predicted symporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=1.9 Score=44.87 Aligned_cols=270 Identities=14% Similarity=0.167 Sum_probs=144.0
Q ss_pred HHHHHHHhhhcCcCCCchhHHHH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCC
Q 039800 104 SAFCYTEFAVDMPVAGGAFSYLR-VTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGF 182 (576)
Q Consensus 104 ~a~~~~el~~~~p~~Gg~y~~~~-~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (576)
..+..+|--+++-+- ..-++.. |.-.+..-.+++..-++...........+.+..+..+++.+..-
T Consensus 90 ~~fL~A~~LRk~Gky-T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~v------------ 156 (529)
T COG4147 90 LLFLIAEYLRKLGKY-TFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYHV------------ 156 (529)
T ss_pred HHHHHHHHHHhcCCc-chHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcee------------
Confidence 455566666665332 2444444 44445666666666666666666777777777888777743211
Q ss_pred chhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCC-------C------CCCCCch-
Q 039800 183 NEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK---DPKNP-------S------GFFPYGA- 245 (576)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~---~~~~~-------~------~~~~~g~- 245 (576)
.+.++.++....+.+-|+|...+.|.+=..+.+...++..+....+ ++... . ...+.|.
T Consensus 157 ----gv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~ 232 (529)
T COG4147 157 ----GVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLL 232 (529)
T ss_pred ----ehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCc
Confidence 2334444555566678888888888777666666655555444443 11110 1 1111121
Q ss_pred -hHHHHHHHHHHHHHhhhhhHhhhhhhh---cCcCCchhhHHHHHHHHHHHHHHHHHHHHHh----cc--cCC-------
Q 039800 246 -KGVFNGAAMVYLSYIGYDAVSTMAEEV---KNPVKDIPIGVSGSVIIVTVLYCLMAASMSM----LM--PYD------- 308 (576)
Q Consensus 246 -~~~~~~~~~~~~~f~G~e~~~~~~~E~---k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~----~~--~~~------- 308 (576)
...+..+...+--..|.-...|.--.. .+ .|+.+|...++...+.++|+.....-.+ .. |..
T Consensus 233 ~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~-~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~ 311 (529)
T COG4147 233 YKDPIDFISLGFALMVGTAGLPHILMRFFTVPD-AKEARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAAK 311 (529)
T ss_pred ccCHHHHHHHHHHHHHccCCCCeEEEEEEecCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhc
Confidence 223333333344445666555543221 22 2567788899999999999876654221 11 111
Q ss_pred -----cCCC-----C-chHHHhhccCCCC-hhHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhhcCCCchhhhh
Q 039800 309 -----MIDA-----E-APFSGAFSGKSDG-WKWVSNVIGVGASFGILTSLLVAMLGQ----ARYMCVIGRSSVVPAWFAR 372 (576)
Q Consensus 309 -----~~~~-----~-~p~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----sR~l~a~a~dg~lP~~~~~ 372 (576)
+.+. . +........ .++ ++|+..+++...+.+.+++.-+..+.. ||=+|.+--|+..+ +
T Consensus 312 w~~~~D~~~~gi~~~~n~a~vlaa~-~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~as----e 386 (529)
T COG4147 312 WIKTGDANGDGIGGWTNMAAVLAAP-AIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKGAT----E 386 (529)
T ss_pred ccccccccccccccccchHHHhhhH-HhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCCCC----c
Confidence 1110 1 111222222 555 588888888888888887766665544 44455544443322 2
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHh
Q 039800 373 VHPKTSTPVNASAFLGIFTAAIALF 397 (576)
Q Consensus 373 ~~~~~~~P~~ai~~~~~~~~~~~~~ 397 (576)
.. +-..-..++....+++..+...
T Consensus 387 ~~-~v~vaRi~~v~~~vva~~lgi~ 410 (529)
T COG4147 387 KK-EVRVARIAVVILGVVAILLGIL 410 (529)
T ss_pred cc-eehhHHHHHHHHHHHHHHheec
Confidence 22 2333344555555666555544
|
|
| >TIGR00842 bcct choline/carnitine/betaine transport | Back alignment and domain information |
|---|
Probab=96.04 E-value=2.5 Score=44.59 Aligned_cols=24 Identities=8% Similarity=0.219 Sum_probs=18.7
Q ss_pred ccccChHHHHHHHhhhhhhhhHHh
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFV 76 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~ 76 (576)
|.+++..+.+.|.++.-+|.|+.+
T Consensus 34 kPefS~~sW~aMlf~aG~G~gllf 57 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLMF 57 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhhh
Confidence 456888888888888888877654
|
properties inherent to their polypeptide chains. |
| >KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=2.1 Score=44.57 Aligned_cols=37 Identities=19% Similarity=0.459 Sum_probs=26.1
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhh
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRL 84 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~ 84 (576)
..++-+|..++++.+..=.+..++.+.+...+..+..
T Consensus 48 Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~l 84 (572)
T KOG2466|consen 48 PVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALEL 84 (572)
T ss_pred cCCcccccccHHHHHHHHHhccccccceeehhhHHhc
Confidence 3344567899999988877777777777666655543
|
|
| >PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=3.4 Score=44.17 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=20.9
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhc
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVT 77 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~ 77 (576)
|.+++.++.+.|.++.-+|+|+.+.
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllfw 107 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLFW 107 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhhh
Confidence 6679999999999998888887653
|
|
| >COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.4 Score=46.68 Aligned_cols=338 Identities=15% Similarity=0.139 Sum_probs=149.8
Q ss_pred HHHHHhhhh---hhhhHHhchHHhhhhccch----HHHHHH--HHHHHHHHHHHHHHHHhhhcC--cCCCchhHHHH---
Q 039800 61 LVCFGIGGM---VGAGVFVTTGRASRLNAGP----AIVISY--AIAGLCALLSAFCYTEFAVDM--PVAGGAFSYLR--- 126 (576)
Q Consensus 61 ~~~~~~~~~---ig~gi~~~~~~~~~~~~G~----~~~~~~--li~~l~~~~~a~~~~el~~~~--p~~Gg~y~~~~--- 126 (576)
++.-++|.+ ||+..............|. ..+++. ++-+-+.+.+..-|.-+.-+- ...||......
T Consensus 18 l~lgAiGVVyGDIGTSPLYa~~e~~~~~~~~~v~~~~VlGvlSLi~WtLtlIVTiKYv~~vlRADN~GEGGilsL~aL~~ 97 (627)
T COG3158 18 LTLGAIGVVYGDIGTSPLYALREALSGQGGLGVSRDEVLGVLSLIIWTLTLIVTIKYVLFVLRADNNGEGGILSLMALAR 97 (627)
T ss_pred HhhheeeeEeccCCCChHHHHHHHhccCCCCCCCcceeeeHHHHHHHHHHHHHHHhhheeEEecCCCCCchhhhHHHHHH
Confidence 344444444 6777776666665553441 122221 222223333344444444443 36678776653
Q ss_pred HHhchhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHH
Q 039800 127 VTFGEFAAFLT------GSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVI 200 (576)
Q Consensus 127 ~~~g~~~g~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (576)
+..+|...++. +-.+.-.-+++.+....++.+-+...-+... .+ +..++.++++....+.
T Consensus 98 ~~~~~~~~~l~~~g~iGaalf~GD~vITPAiSVlSAvEGL~iv~p~~~-~~-------------Vvpitl~IL~~LF~iQ 163 (627)
T COG3158 98 RAAPRRTALLIILGLIGAALFYGDAVITPAISVLSAVEGLEIVTPALD-PY-------------VVPITLIILVLLFLIQ 163 (627)
T ss_pred hhcCCCchhhhhHHHHhHHHHhcccccchhHHHHHHhccccccCcccc-Cc-------------cHHHHHHHHHHHHHHh
Confidence 44443332322 2222222334444444444333332221111 11 2245556666666666
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCCCCCCCC---------chhHHHHHHHHHHHHHhhhhhHhhh
Q 039800 201 CYSTRDSSVVNMILTVLHILFIAFVILMGFWK---DPKNPSGFFPY---------GAKGVFNGAAMVYLSYIGYDAVSTM 268 (576)
Q Consensus 201 ~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~---~~~~~~~~~~~---------g~~~~~~~~~~~~~~f~G~e~~~~~ 268 (576)
..|.. ++..+++.+.++-.+.+...|+.+ +++-...++|. ++.|++ ....++.+.+|-|+.-
T Consensus 164 ~~GT~---~Vg~~FGPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~fl~~~~~~gf~-vLGaVfLavTGaEALY-- 237 (627)
T COG3158 164 RFGTG---RVGKLFGPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFF-VLGAVFLAVTGAEALY-- 237 (627)
T ss_pred cccch---hhhhhhccHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHHHHhCCceEEE-EeeeeeeeeccHHHHH--
Confidence 66654 455557777777777777777776 55544445442 222211 1122445667777542
Q ss_pred hhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhccc-CCcCCCCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHH
Q 039800 269 AEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLMP-YDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLL 347 (576)
Q Consensus 269 ~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (576)
++-=+--+|++.+|=...+.= .++.++.=.+..= .+.-...+|+...+- .|...-+.+.+..+..-+..
T Consensus 238 ADmGHfGr~pI~~AWf~vv~P----~L~LNY~GQGA~vL~~p~a~~npFF~~~P------~~aliP~viLAT~ATVIASQ 307 (627)
T COG3158 238 ADMGHFGRKPIRVAWFFVVLP----CLLLNYFGQGALLLSNPEAIGNPFFLLAP------DWALIPLVILATAATVIASQ 307 (627)
T ss_pred hhccccCCccHHHHHHHHHHH----HHHHHHccccceeccCcccccCcHHHhCh------hhHHHHHHHHHHHHHHHHHH
Confidence 222233345554444332221 2222221111000 000112345443333 33333222222222221222
Q ss_pred HHHhhHHHHHHHHhhcCCCchh-hhhhcCC-CC---CchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH-
Q 039800 348 VAMLGQARYMCVIGRSSVVPAW-FARVHPK-TS---TPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANA- 421 (576)
Q Consensus 348 ~~~~~~sR~l~a~a~dg~lP~~-~~~~~~~-~~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 421 (576)
+.+.++=-+....-|-|.+|+. ..+.+++ .| .|..-.++...+..++..+.+-+.+.....++.-....++.+.
T Consensus 308 AvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiAVTgtM~iTt~L~ 387 (627)
T COG3158 308 AVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIAVTGTMVITTILL 387 (627)
T ss_pred HHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhChheeehhHHHHHHH
Confidence 2222222222333456899943 4444433 22 5766655555555555555666777776666555555444433
Q ss_pred HHHHhhc
Q 039800 422 VIYRRYV 428 (576)
Q Consensus 422 ~~~~r~~ 428 (576)
..+.|++
T Consensus 388 ~~~~~~~ 394 (627)
T COG3158 388 TVVMRKK 394 (627)
T ss_pred HHHHHHh
Confidence 3344443
|
|
| >COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.38 E-value=3.5 Score=41.52 Aligned_cols=244 Identities=14% Similarity=0.150 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhcCc------CCCchhHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039800 92 ISYAIAGLCALL-SAFCYTEFAVDMP------VAGGAFSYLRVT-FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTA 163 (576)
Q Consensus 92 ~~~li~~l~~~~-~a~~~~el~~~~p------~~Gg~y~~~~~~-~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (576)
++|++-+.+..+ .-+++.-+++++. .+=...++.+.. =+++.-++++....+.+...+.+...+.+..+...
T Consensus 72 lgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~ 151 (473)
T COG4145 72 LGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETA 151 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 456555555555 3344555555443 122355555443 56788999999999999999999998999999888
Q ss_pred hCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc-----------
Q 039800 164 IGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK----------- 232 (576)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~----------- 232 (576)
.+.+-..- ..+.+.. .......-|-|.......+-+.+.++..+++.+..+..
T Consensus 152 ~gidY~tg-------------L~ifa~~---V~iYt~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl 215 (473)
T COG4145 152 LGIDYTTG-------------LLIFAVS---VAIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETL 215 (473)
T ss_pred HCCCchhh-------------HHHHHHH---HHHHHhhcceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 77543211 0011111 12223345666655555444444444443333332221
Q ss_pred ---CCCCCCCCCCCc--hhHHHHHH-HHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHHH-HHh--
Q 039800 233 ---DPKNPSGFFPYG--AKGVFNGA-AMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAAS-MSM-- 303 (576)
Q Consensus 233 ---~~~~~~~~~~~g--~~~~~~~~-~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~-~~~-- 303 (576)
|++-..|...++ ...+..++ ..+.+.-.|.-....-.-..|| +|.+.++|+++.+++.++-+.+-.+ ..+
T Consensus 216 ~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~gra 294 (473)
T COG4145 216 TTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRA 294 (473)
T ss_pred HhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhh
Confidence 222222222222 11222222 1122333343333333344577 5789999999888877765444332 222
Q ss_pred cccCCcCCCCchHHH-hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039800 304 LMPYDMIDAEAPFSG-AFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARY 356 (576)
Q Consensus 304 ~~~~~~~~~~~p~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 356 (576)
..| |--..|.-.+. +.+ .+. |....+....-+.+.+++.++.+...|-.
T Consensus 295 ViP-dlt~~D~Vip~lalk--vlp-p~~agifl~apmaAiMSTIds~L~~~sst 344 (473)
T COG4145 295 VIP-DLTVVDLVIPTLALK--VLP-PFAAGIFLAAPMAAIMSTINSQLLQSSST 344 (473)
T ss_pred hcC-CCCccchhHHHHHHH--hcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 21122222222 233 443 55666666667777888888887766654
|
|
| >COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.97 E-value=6 Score=42.02 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcC-CCchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHH-
Q 039800 330 VSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSS-VVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLV- 407 (576)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg-~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~- 407 (576)
+..+..+..++....-..+..-+++=++-.++..| .-|+.+-|+- +++ +++++...+.+.+.++.+-+.+
T Consensus 403 l~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~-------W~v-~~~~ia~~lL~~ggl~aLqt~~i 474 (537)
T COG1292 403 LGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVF-------WGV-LIGLIAAVLLLIGGLEALQTAAI 474 (537)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHHH-------HHH-HHHHHHHHHHHhCCHHHHHHHHH
Confidence 34444444444444455566677777887777665 3343333332 333 3444444455555544444443
Q ss_pred --HHHHHHHHHHHHHHHHHH
Q 039800 408 --SIGTLFVFYMVANAVIYR 425 (576)
Q Consensus 408 --~~~~~~~~~~~~~~~~~~ 425 (576)
..-+.+..++.+.++++-
T Consensus 475 i~alPF~~vll~~~~sl~k~ 494 (537)
T COG1292 475 ITALPFSLVLLVMMFSLIKD 494 (537)
T ss_pred HHHccHHHHHHHHHHHHHHH
Confidence 333344445556666653
|
|
| >PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses | Back alignment and domain information |
|---|
Probab=94.78 E-value=7.6 Score=42.24 Aligned_cols=146 Identities=16% Similarity=0.123 Sum_probs=73.6
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHhhccC----------CCCCCCCCCCchhHHHHHHHHHHHHH-hhhhhHhhh
Q 039800 200 ICYSTRDSSVVNMILTVLHILFIAFVILMGFWKD----------PKNPSGFFPYGAKGVFNGAAMVYLSY-IGYDAVSTM 268 (576)
Q Consensus 200 ~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~----------~~~~~~~~~~g~~~~~~~~~~~~~~f-~G~e~~~~~ 268 (576)
...|+|..+|+.......-.+.++++.+-++..+ ..+++.+.+ ..-+..+...++|+. .|+.....+
T Consensus 195 i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~--~~vW~~A~~Q~ffsl~ig~G~~it~ 272 (523)
T PF00209_consen 195 IWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLD--PKVWIAALGQVFFSLSIGFGIMITY 272 (523)
T ss_dssp TTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTS--HHHHHHHHHHHHHHTTTTSSHHHHH
T ss_pred eEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhH--HHHHHHHHHHHhhccCCCcceEEEE
Confidence 4568888888776666544454444444444320 011222211 233566777888888 588888888
Q ss_pred hhhhcCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcc---------cCCcCCCCc------hHHHhhccCCCChhHHHHH
Q 039800 269 AEEVKNPVKDIPIGVSGSVIIVTVLYCLMAASMSMLM---------PYDMIDAEA------PFSGAFSGKSDGWKWVSNV 333 (576)
Q Consensus 269 ~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~---------~~~~~~~~~------p~~~~~~~~~~g~~~~~~~ 333 (576)
+.-.|+ +.|++|.............++..+++.... +.++..++. .+++++.+ .-+++....+
T Consensus 273 ~Sy~~~-~~n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~~L~Fi~~P~~~~~-~p~~~~~~~l 350 (523)
T PF00209_consen 273 GSYNKF-KNNIFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGPGLAFIVLPEAFSQ-MPGGRFWAIL 350 (523)
T ss_dssp HTTS-T-TS-SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CHHHHHTHHHHHHTT-STTHHHHHHH
T ss_pred cCcCCC-CccccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCCCchHHHHHHHHHc-CCCCcChHHH
Confidence 888777 567888666655555544433322221111 112222222 35567774 4344555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 039800 334 IGVGASFGILTSLLVA 349 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~ 349 (576)
...+.+++.+++..+.
T Consensus 351 FFl~l~~agl~S~i~~ 366 (523)
T PF00209_consen 351 FFLMLFLAGLTSQISM 366 (523)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCc
Confidence 5555555555554443
|
High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B .... |
| >KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.64 Score=45.91 Aligned_cols=229 Identities=11% Similarity=0.061 Sum_probs=125.0
Q ss_pred CCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcC-cCCCc-------hh
Q 039800 51 DMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDM-PVAGG-------AF 122 (576)
Q Consensus 51 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~-p~~Gg-------~y 122 (576)
+-+.+++-++.-.-.-..+=|.=+...| ....- +|-..+.+.+..+.++..++-.+.| +.+ |...| .|
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP-~Avlh-GGyw~i~amvg~A~vCcyTGk~Li~--CLYE~~~dGevVrvRdsY 187 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLP-IAVLH-GGYWSIGAMVGVAYVCCYTGKLLIE--CLYENGEDGEVVRVRDSY 187 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccc-eeeeE-cchhHHHHHHhhhhhhhccchhhhh--hhccCCCCCcEEEeehhH
Confidence 3345688888766555544343332222 22222 5555665555555555443333322 111 12122 23
Q ss_pred HHHHHH-hchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CcccccccCCCCCCCchhhHHHHHHHHHHH
Q 039800 123 SYLRVT-FGEFAA-FLTGSNLILEYVMSNAAVARGFASYFGTAIGVP---TAKWRLKVDGLPDGFNEIDVLAVAVVLVIT 197 (576)
Q Consensus 123 ~~~~~~-~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (576)
.-..+. ++|.+| ..+....++....++..+....++.+..-++.. ...|. ++.-+.+.-+.
T Consensus 188 vaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm--------------~i~~a~LLpc~ 253 (524)
T KOG4303|consen 188 VAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWM--------------MITSASLLPCS 253 (524)
T ss_pred HHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchh--------------hhhhHHHhhhH
Confidence 333344 666655 555566777778888888877888887766532 22231 22222222222
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCc
Q 039800 198 FVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK--DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNP 275 (576)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p 275 (576)
-+...|..+++..+.+..+++.-++++...+.. |+.-..--+.-+...+-..+-+.+|+|+..-....+-+.+|||
T Consensus 254 --FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~p 331 (524)
T KOG4303|consen 254 --FLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNP 331 (524)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCCh
Confidence 346779999999999999998877777666654 3321100000011111111223457777777778888999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHH
Q 039800 276 VKDIPIGVSGSVIIVTVLYCLMAAS 300 (576)
Q Consensus 276 ~r~~p~ai~~~~~~~~i~y~~~~~~ 300 (576)
.+ .-.-+-++=+...++=.++..+
T Consensus 332 s~-Fn~Ml~WsHIAAaVfK~~Fg~~ 355 (524)
T KOG4303|consen 332 SQ-FNVMLKWSHIAAAVFKVVFGML 355 (524)
T ss_pred hH-heeeeehHHHHHHHHHHHHHHh
Confidence 63 4556667766666665554443
|
|
| >PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex | Back alignment and domain information |
|---|
Probab=91.11 E-value=19 Score=36.58 Aligned_cols=95 Identities=16% Similarity=0.066 Sum_probs=57.1
Q ss_pred cChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCC-chhHHHHHHhchhH
Q 039800 56 LRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAG-GAFSYLRVTFGEFA 133 (576)
Q Consensus 56 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~G-g~y~~~~~~~g~~~ 133 (576)
.+.+-++..=+.++.|.|....|-..+. =|+. +.+..++++++.=..- =|..+-....+.| +.-+-+++..||+.
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~--~GwlPa~lWI~~G~if~GaVH-D~~sl~~SvR~~G~Si~~i~~~~lG~~~ 128 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQ--FGWLPALLWIVFGCIFAGAVH-DYGSLMASVRHKGKSIGEIAGKYLGKRA 128 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHH--hcchHHHHHHHHccHHHHHHH-HHHHHhhhhcCCCccHHHHHHHHHHHHH
Confidence 4556777788888889998887766543 4654 4443344444433322 2222222233333 67788889999998
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039800 134 AFLTGSNLILEYVMSNAAVA 153 (576)
Q Consensus 134 g~~~g~~~~~~~~~~~~~~~ 153 (576)
+.+..+..++.-+...+...
T Consensus 129 ~~lf~~f~~~~lilV~avF~ 148 (376)
T PF02554_consen 129 KKLFLIFIFFLLILVIAVFA 148 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88877666655555444443
|
This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane |
| >PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function | Back alignment and domain information |
|---|
Probab=89.93 E-value=10 Score=39.59 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=25.4
Q ss_pred HhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh
Q 039800 360 IGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF 397 (576)
Q Consensus 360 ~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~ 397 (576)
+|.....-|.+.|+-+.-++|..|+.+..+++.+.+++
T Consensus 74 lA~sp~v~r~l~~lA~~p~t~~~Ai~lv~~vs~i~s~i 111 (453)
T PF02667_consen 74 LASSPPVKRLLDRLASLPKTPRQAIVLVALVSMIASWI 111 (453)
T ss_pred HhCChHHHHHHHHHHhcCCCCcceeeHHHHHHHHHHHH
Confidence 33333333556666656789999999988888766654
|
|
| >PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1 | Back alignment and domain information |
|---|
Probab=87.65 E-value=16 Score=37.13 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=25.9
Q ss_pred HhhhhhhhcCcCCc----hhhHHHHHHHHHHHHHHHHHHH
Q 039800 265 VSTMAEEVKNPVKD----IPIGVSGSVIIVTVLYCLMAAS 300 (576)
Q Consensus 265 ~~~~~~E~k~p~r~----~p~ai~~~~~~~~i~y~~~~~~ 300 (576)
....++++.++++| .|+|+..+++.+.-.-.+...+
T Consensus 28 L~~~~~~ig~~~~D~~~~T~~al~~tll~alp~pl~~~~~ 67 (340)
T PF12794_consen 28 LERIAKRIGKVRQDSFSHTPRALLLTLLLALPLPLLLLAI 67 (340)
T ss_pred HHHHHHHcCCccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777666 8999999988887765555544
|
|
| >KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.58 E-value=19 Score=39.03 Aligned_cols=222 Identities=14% Similarity=0.117 Sum_probs=108.2
Q ss_pred CchhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHH-H
Q 039800 119 GGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVI-T 197 (576)
Q Consensus 119 Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 197 (576)
...|.|.+..|++..-.+....+.+..+...+...+.-+..++...+.+.. ....++..++ .
T Consensus 108 ~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~~~-----------------l~~~~~~~ic~~ 170 (585)
T KOG2349|consen 108 TTMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGINLY-----------------LIVVILGLICVF 170 (585)
T ss_pred eehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhccCce-----------------eehHHHHHHHHH
Confidence 368999999999886666666666666666665555555556655543321 1111112222 2
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhcc--CC------------CCCC-CCCC-----CchhHHHHHHHHHHH
Q 039800 198 FVICYSTRDSSVVNMILTVLHILFIAFVILMGFWK--DP------------KNPS-GFFP-----YGAKGVFNGAAMVYL 257 (576)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~--~~------------~~~~-~~~~-----~g~~~~~~~~~~~~~ 257 (576)
.-.+-|.|..-+...+-+.+.+.....+.+.+... +. .++. .+.. +.++.++.+......
T Consensus 171 YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l 250 (585)
T KOG2349|consen 171 YTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWL 250 (585)
T ss_pred HHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHH
Confidence 23344666666555566666666666666655443 10 0111 1211 123336666666666
Q ss_pred HHhhhhhHhhh-hhhhcCcCCchhhHHHHHHHHHHHHHHHHHHH-HHh------cccCC--cCC-CCchHHHhhccCCCC
Q 039800 258 SYIGYDAVSTM-AEEVKNPVKDIPIGVSGSVIIVTVLYCLMAAS-MSM------LMPYD--MID-AEAPFSGAFSGKSDG 326 (576)
Q Consensus 258 ~f~G~e~~~~~-~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~~-~~~------~~~~~--~~~-~~~p~~~~~~~~~~g 326 (576)
.+.|.+....- ---.|+ .|...+++........+...+.... +.. +.|.. ... ++.-++....+ ..|
T Consensus 251 ~~~~vnQ~~VQR~lsl~s-lk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d-~~~ 328 (585)
T KOG2349|consen 251 SYYGVNQLIVQRYLSLPS-LKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFVMD-LMG 328 (585)
T ss_pred HHHhhhHHHHhHHhcccc-HHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHHHH-hcC
Confidence 66677755421 111122 2344455555444444443333322 111 11111 111 12211211111 222
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 039800 327 -WKWVSNVIGVGASFGILTSLLVAMLGQARYMCV 359 (576)
Q Consensus 327 -~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 359 (576)
-+....++..++..+.++++.+.+.+.|-+.+.
T Consensus 329 ~~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~e 362 (585)
T KOG2349|consen 329 HLPGLRGLFIAVVFSAALSSLSSIFNSLSTVFLE 362 (585)
T ss_pred CCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 133455666667777777777777777777665
|
|
| >PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane | Back alignment and domain information |
|---|
Probab=85.42 E-value=1.3 Score=37.39 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 039800 525 VRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 525 ~~~~~~~~i~~~~y~~~~~~~ 545 (576)
++.++..+|.++.|++.|+||
T Consensus 73 v~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 73 VMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 444555566677776655554
|
Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.28 E-value=21 Score=37.09 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh
Q 039800 341 GILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF 397 (576)
Q Consensus 341 ~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~ 397 (576)
+.+++.....++.|+.+..+--|+.-||.| .| ..+++++++.+++.+.
T Consensus 67 G~i~s~f~i~YG~sKf~~G~~sDr~npr~f--------m~-~gLilsai~nil~Gfs 114 (448)
T COG2271 67 GILGSAFSITYGVSKFVMGVLSDRSNPRYF--------MA-FGLILSAIVNILFGFS 114 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCcee--------eh-HHHHHHHHHHHHHhhh
Confidence 455566677899999999988887644333 32 2356666666665544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 576 | ||||
| 3gi9_C | 444 | Crystal Structure Of Apct Transporter Bound To 7f11 | 1e-12 | ||
| 3gi8_C | 444 | Crystal Structure Of Apct K158a Transporter Bound T | 2e-12 | ||
| 4dji_A | 511 | Structure Of Glutamate-Gaba Antiporter Gadc Length | 2e-06 | ||
| 3l1l_A | 445 | Structure Of Arg-Bound Escherichia Coli Adic Length | 5e-04 |
| >pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 | Back alignment and structure |
|
| >pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 | Back alignment and structure |
|
| >pdb|4DJI|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc Length = 511 | Back alignment and structure |
|
| >pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic Length = 445 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 | Back alignment and structure |
|---|
Score = 332 bits (853), Expect = e-109
Identities = 80/431 (18%), Positives = 170/431 (39%), Gaps = 22/431 (5%)
Query: 50 SDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYT 109
K L ++ V +G M+GA +F G +++ AG + ++ ++G+ ALL A+ YT
Sbjct: 2 ELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYT 60
Query: 110 EFAVDMPVAGGAFSYLRVTFGE-FAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPT 168
+ + G +++ G+ L + YV+S A A+GFA YF I P
Sbjct: 61 KLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPI 120
Query: 169 AKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVILM 228
+ I + + +V T + + ++ + ++ +L + I
Sbjct: 121 NTFN------------IAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFA 168
Query: 229 GFWK-DPKNPSGFF-PYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGS 286
G P P G+ +A+ +LSY+G+ ++ +E ++NP K++P + S
Sbjct: 169 GLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFIS 228
Query: 287 VIIVTVLYCLMAASMSMLMPYDMIDAEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSL 346
++IV +Y +A S +P D + + + A + K +I +GA F I +++
Sbjct: 229 ILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAM 288
Query: 347 LVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNL 406
+ G A + + +P +F R AL ++ + ++
Sbjct: 289 NATIYGGANVAYSLAKDGELPEFFERKVWF--KSTEGLYITSALGVLFALLFNMEGVASI 346
Query: 407 VSIGTLFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKA 466
S + ++ V + + + V + L+++ +
Sbjct: 347 TSAVFMVIYLFVILSHYILID----EVGGRKEIVIFSFIVVLGVFLLLLYYQWITNRFVF 402
Query: 467 FMLGASAIVAI 477
+ + A+ I +
Sbjct: 403 YGIIATFIGVL 413
|
| >3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 | Back alignment and structure |
|---|
Score = 231 bits (591), Expect = 4e-70
Identities = 77/421 (18%), Positives = 151/421 (35%), Gaps = 35/421 (8%)
Query: 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFC 107
S + + G ++G+GVF+ + G + + + + AL +
Sbjct: 2 SSDADAHKVGLIPVTLMVSGAIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMV 59
Query: 108 YTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVP 167
Y + + P GG+++Y R FG F + T L + N A+ Y +
Sbjct: 60 YAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL 119
Query: 168 TAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHIL-FIAFVI 226
W + + V V+ + + + + V + TVL ++ + +
Sbjct: 120 KDPW------------VLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAV 167
Query: 227 LMGFWKDPKNPSGFFPYGAKGVF----NGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIG 282
FW + + G F + + S+IG ++ S A VKNP +++PI
Sbjct: 168 FGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIA 227
Query: 283 VSGSVIIVTVLYCLMAASMSMLMPYDMIDA-EAPFSGAFSGKSDGWKWVSNVIGVGASFG 341
G V+I V Y L ++ ++P + +PF A + ++ A+ G
Sbjct: 228 TIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAA--RMALGDTAGAIVSFCAAAG 285
Query: 342 ILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAAIALFT--- 398
L SL L + + P FARV+ K TPV +GI L +
Sbjct: 286 CLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISP 344
Query: 399 ----DLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTL 454
+ ++ ++ I TL + A++ + + + + ++ +
Sbjct: 345 NATKEFGLVSSVSVIFTLVPYLYTCAALLLLGH-----GHFGKARPAYLAVTTIAFLYCI 399
Query: 455 I 455
Sbjct: 400 W 400
|
| >4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 | Back alignment and structure |
|---|
Score = 220 bits (561), Expect = 5e-65
Identities = 76/480 (15%), Positives = 164/480 (34%), Gaps = 46/480 (9%)
Query: 50 SDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGL-CALLSAFCY 108
+ +T + L G + + V + +G ++V + G+ + C
Sbjct: 2 ATSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVFFLLLGGILWFIPVGLCA 61
Query: 109 TEFAVDMPVA-GGAFSYLRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVP 167
E A GG F+++ T G F S L+ + + + P
Sbjct: 62 AEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWP 121
Query: 168 TAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVVNMILTVLHILFIAFVIL 227
L + + A+ ++ + T+ ++ + + IL AF+++
Sbjct: 122 ---------ALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILI 172
Query: 228 MGFWK----------DPKNPSGFFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVK 277
+ + + F + G LSY+G +A +T E+ NP +
Sbjct: 173 ALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGR 232
Query: 278 DIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAP----FSGAFSGKSDGWKWVSNV 333
D P+ + ++ L + S++M++P + I+ A F+ S + +W V
Sbjct: 233 DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRV 292
Query: 334 IGVGASFGILTSLLVAMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAA 393
I G+L + ++G +R M V + +++PA FA+++ K PV + T+
Sbjct: 293 ISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSI 351
Query: 394 IALFTDL---------TVLLNLVSIGTLFVFYMVANAVIYRRY----------VNLGTTN 434
+ + L L + L ++M+ I + G
Sbjct: 352 ALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGV 411
Query: 435 PQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPE 494
L S+ + I + + S + +V+ V+ ++ +
Sbjct: 412 KLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYV-ELLVVSFLVVLALPFILYAVHDRK 470
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 576 | |||
| 3l1l_A | 445 | Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC | 100.0 | |
| 3gia_A | 444 | Uncharacterized protein MJ0609; membrane protein, | 100.0 | |
| 4djk_A | 511 | Probable glutamate/gamma-aminobutyrate antiporter; | 100.0 | |
| 2jln_A | 501 | MHP1; hydantoin, transporter, membrane protein, nu | 99.16 | |
| 3dh4_A | 530 | Sodium/glucose cotransporter; membrane protein, sy | 98.84 | |
| 2xq2_A | 593 | Sodium/glucose cotransporter; transport protein, i | 98.8 | |
| 2a65_A | 519 | Leutaa, Na(+):neurotransmitter symporter (SNF fami | 97.9 | |
| 4ain_A | 539 | Glycine betaine transporter BETP; membrane protein | 94.63 | |
| 2wsw_A | 509 | BCCT family betaine/carnitine/choline transporter; | 94.11 |
| >3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-52 Score=441.97 Aligned_cols=415 Identities=19% Similarity=0.279 Sum_probs=351.9
Q ss_pred CCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHh
Q 039800 50 SDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTF 129 (576)
Q Consensus 50 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 129 (576)
+++||+++.++.+.+.++.++|+|+|..++.. .. +|+..+++|+++++++++.+++++|+++++|++||.|+|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-AS-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HH-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HH-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence 45678999999999999999999999998774 34 68888999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 130 GEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 130 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
||.+|++.+|.+++.+....+.+...++++++..++...+.+. ..+++++++++++.+|++|+|..++
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~in~~g~~~~~~ 149 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWV------------LTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHH------------HHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHH------------HHHHHHHHHHHHHHHHHhchHHHHH
Confidence 9999999999999999999998888888888766543211121 2367888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CCCCC-CCCCCCc---hhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHH
Q 039800 210 VNMILTVLHILFIAFVILMGFWK-DPKNP-SGFFPYG---AKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVS 284 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~~i~~~~~-~~~~~-~~~~~~g---~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~ 284 (576)
++.+.+..+++.++++++.++.+ +++++ .++.+.+ +.++..++...+|+|.|+|.+++++||+|||+|++||++.
T Consensus 150 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~ 229 (445)
T 3l1l_A 150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATI 229 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHH
Confidence 99999999999998888877766 44444 2343433 5678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCcCC-CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhc
Q 039800 285 GSVIIVTVLYCLMAASMSMLMPYDMID-AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRS 363 (576)
Q Consensus 285 ~~~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 363 (576)
.+...++++|++..++.....|++++. .+.|+.++++ ..++++...++.+..+++.+++.++.+++.+|++++||||
T Consensus 230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAAR--MALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHH--HHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999989988774 4678999888 4445888899999999999999999999999999999999
Q ss_pred CCCchhhhhhcCCCCCchhHHHHHHHHHHHHHHh-------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 039800 364 SVVPAWFARVHPKTSTPVNASAFLGIFTAAIALF-------TDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLGTTNPQ 436 (576)
Q Consensus 364 g~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 436 (576)
|.+|++|+|+| |+++|+++++++.+++.++.+. ..++.+.++.+...++.|.+.+++++++|+|+| ++|
T Consensus 308 g~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~r-- 383 (445)
T 3l1l_A 308 GLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GKA-- 383 (445)
T ss_dssp TSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GGG--
T ss_pred CCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccc--
Confidence 99999999999 6799999999999987766653 357899999999999999999999999887755 211
Q ss_pred chhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccHHHHHHHHHHHHHH
Q 039800 437 PTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAKKPEFWGVPLMPWIPCISIFLNIFLL 516 (576)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (576)
.|..++.+.++.+.+.+.+
T Consensus 384 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 402 (445)
T 3l1l_A 384 -------------------------------------------------------------RPAYLAVTTIAFLYCIWAV 402 (445)
T ss_dssp -------------------------------------------------------------CTTTHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------cchhHHHHHHHHHHHHHHH
Confidence 1345678888888888888
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHhhhcc
Q 039800 517 GSLDGPSYVRFGFFSALAVLVYLLYSVHA 545 (576)
Q Consensus 517 ~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 545 (576)
...++.......+++++|+++|+++++|+
T Consensus 403 ~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 403 VGSGAKEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888888888899999999997776655
|
| >3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=421.50 Aligned_cols=364 Identities=21% Similarity=0.371 Sum_probs=323.9
Q ss_pred CCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhc
Q 039800 51 DMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFG 130 (576)
Q Consensus 51 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g 130 (576)
+.||+++.++.++++++.++|+|++..++..... +|+..+++|+++++++++.+++++|+++++|++||.|+|+++.+|
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~-~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G 81 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHH-HGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhC
Confidence 3578999999999999999999999999887766 888999999999999999999999999999999999999999999
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHH
Q 039800 131 EF-AAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSV 209 (576)
Q Consensus 131 ~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (576)
|. .+...+|.++++|....+.+...+++++...++...+.+. ..+++++++++++.+|++|+|..++
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~in~~g~~~~~~ 149 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFN------------IAITEIGIVAFFTALNFFGSKAVGR 149 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH------------HHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH------------HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 96 3555689999999999999999999999988765433322 2267788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CCCCCCC-CCCCchhHHHHHHHHHHHHHhhhhhHhhhhhhhcCcCCchhhHHHHHH
Q 039800 210 VNMILTVLHILFIAFVILMGFWK-DPKNPSG-FFPYGAKGVFNGAAMVYLSYIGYDAVSTMAEEVKNPVKDIPIGVSGSV 287 (576)
Q Consensus 210 ~~~~~~~~~l~~~~~~~i~~~~~-~~~~~~~-~~~~g~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~ai~~~~ 287 (576)
++.+.+.++++.++++++.++.. +++++.+ +.+.++.+++.+....+|+|.|+|.+++++||+|||+|++||++..+.
T Consensus 150 ~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~ 229 (444)
T 3gia_A 150 AEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISI 229 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHH
Confidence 99999999999998888888776 6666655 556677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCcCC--CCchHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCC
Q 039800 288 IIVTVLYCLMAASMSMLMPYDMID--AEAPFSGAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSV 365 (576)
Q Consensus 288 ~~~~i~y~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 365 (576)
..++++|++..++.....|++++. ++.|+.++++ ...+++...++.+..+++.+++.++.+++.||++++|||||.
T Consensus 230 ~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 307 (444)
T 3gia_A 230 LIVMFVYVGVAISAIGNLPIDELIKASENALAVAAK--PFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGE 307 (444)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999998888887763 3457788777 444478888999999999999999999999999999999999
Q ss_pred CchhhhhhcCCCCCchhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 039800 366 VPAWFARVHPKTSTPVNASAFLGIFTAAIALFTDLTVLLNLVSIGTLFVFYMVANAVIYRRYVNLG 431 (576)
Q Consensus 366 lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 431 (576)
+|++|+|+| | ++|.++++++.+++.++.++.+++.+.++.+.+.++.|.+.+++.+++|+++|+
T Consensus 308 lP~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 371 (444)
T 3gia_A 308 LPEFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGG 371 (444)
T ss_dssp CCSSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred CCHHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999998 4 569999999999998888888999999999999999999999999998888654
|
| >4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=420.19 Aligned_cols=405 Identities=18% Similarity=0.258 Sum_probs=313.7
Q ss_pred CCCCCccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHHHHHH-HHHHHHHHHhhh--cCcCCCchhHH
Q 039800 48 SGSDMRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIAGLCA-LLSAFCYTEFAV--DMPVAGGAFSY 124 (576)
Q Consensus 48 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~~l~~-~~~a~~~~el~~--~~p~~Gg~y~~ 124 (576)
+++++||+++++++++++++.++|. +..+. . ..+|+..++.+++++++. ++.+++++|+++ ++| +||.|+|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig~--~~~~~--~-~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMAV--YEYPT--F-ATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCCG--GGHHH--H-HTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHhh--chhHH--H-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhh
Confidence 5677899999999999999999863 32222 2 337888777777777765 569999999999 999 9999999
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcc
Q 039800 125 LRVTFGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYST 204 (576)
Q Consensus 125 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (576)
+++.+||.+|++++|.+++++....+......+.++..++..+ . ++.+.....+++++++++++++|++|+
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~-------~~~~~~~~~~~~~~~~~~~~~in~~g~ 149 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWP--A-------LNEDPITKTIAALIILWALALTQFGGT 149 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCG--G-------GTSCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--c-------cccCcHHHHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999999988888888887654211 1 111111133678888889999999999
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHhhcc----CC----CCCCCCCCCc-hhHHHHHHHHHHHHHhhhhhHhhhhhhhcC
Q 039800 205 RDSSVVNMILTVLHILF-IAFVILMGFWK----DP----KNPSGFFPYG-AKGVFNGAAMVYLSYIGYDAVSTMAEEVKN 274 (576)
Q Consensus 205 ~~~~~~~~~~~~~~l~~-~~~~~i~~~~~----~~----~~~~~~~~~g-~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~ 274 (576)
|..++++.+.+.++++. ++++++.++.. ++ .+..++.|+. ..+.+.++...+|+|.|+|.+++++||+||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~ 229 (511)
T 4djk_A 150 KYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSN 229 (511)
T ss_dssp SSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 99999999998886544 44555555432 11 1223333321 123445667789999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCcCCCCch----HHHhhccCCCC--hhHHHHHHHHHHHHHHHHHHHH
Q 039800 275 PVKDIPIGVSGSVIIVTVLYCLMAASMSMLMPYDMIDAEAP----FSGAFSGKSDG--WKWVSNVIGVGASFGILTSLLV 348 (576)
Q Consensus 275 p~r~~p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 348 (576)
|+|++||++..++.+++++|++..+++....|+++...+++ +..+++ ..| .++...++.+..+++.+++.++
T Consensus 230 P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ 307 (511)
T 4djk_A 230 PGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMS--HVAPEIEWTVRVISALLLLGVLAEIAS 307 (511)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHS--SSCSSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHH--HhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888765443 444555 666 6788899999999999999999
Q ss_pred HHhhHHHHHHHHhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHH-HHHhhc--------HHHHHHHHHHHHHHHHHHHH
Q 039800 349 AMLGQARYMCVIGRSSVVPAWFARVHPKTSTPVNASAFLGIFTAA-IALFTD--------LTVLLNLVSIGTLFVFYMVA 419 (576)
Q Consensus 349 ~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~-~~~~~~--------~~~l~~~~~~~~~~~~~~~~ 419 (576)
.+++.||++++|||||.+|++|+|+| |+++|+++++++.++..+ +..+++ ++.+.++.+.+.+++|.+.+
T Consensus 308 ~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~ 386 (511)
T 4djk_A 308 WIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLF 386 (511)
T ss_dssp HTTHHHHHTCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 589999999998544333 333333 78899999999999999999
Q ss_pred HHHHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCCC
Q 039800 420 NAVIYRRYVNLGTTNPQPTLSFLFLFSVTSIIFTLIWHFVPPCKSKAFMLGASAIVAIAVLQIFHCVVPQAK 491 (576)
Q Consensus 420 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (576)
++++++|+|+++.+|||| .+.++++.+.++++++++.++..++.++|+..+
T Consensus 387 ~~~~~~r~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 437 (511)
T 4djk_A 387 IGYIVLVLKHPDLKRTFN---------------------IPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNI 437 (511)
T ss_dssp HHHHHHHHHCCSCCCSCC---------------------CSSTTHHHHHHHHHHHHHHHHHHHHTTCCCSCS
T ss_pred HHHHHHHHhCCCCCCCee---------------------cCCCchHHHHHHHHHHHHHHHHHHeeeeCCccc
Confidence 999999999888888876 223456666788999999999999999987643
|
| >2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.7e-08 Score=105.49 Aligned_cols=205 Identities=9% Similarity=0.031 Sum_probs=121.1
Q ss_pred CccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHH
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA---IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 128 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 128 (576)
-+|+.++++.+.+=++..+..+.+..-+... . |-. .+++.+++.++........+..+.+.-. ......+..
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~-~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl--~~~v~~R~~ 97 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMT-S--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGI--NFTVAARMP 97 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT-T--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCC--CHHHHTTTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-c--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCC--ChhhhhHhh
Confidence 3567899999988888877766654333322 1 332 4455555555444444444455544422 255578889
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcc
Q 039800 129 FGEFAAFLTGSNLILEYVMSNAAVARGFASYFGTAI----GVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYST 204 (576)
Q Consensus 129 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (576)
||+..+.+......+..+...+......++.+...+ +.+. . .+..+++.++...+.+.|.
T Consensus 98 FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~-~---------------~v~~~i~~~l~~~~~~~G~ 161 (501)
T 2jln_A 98 FGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTN-L---------------PLWIVIFGAIQVVTTFYGI 161 (501)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-H---------------HHHHHHHHHHHHHHHTTHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-H---------------HHHHHHHHHHHHHHHHhCH
Confidence 999999888887777777777777666666665543 3221 1 1333445556677788999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcc-CC--CCCCCCCC-CchhHHHHHHHHH-HHHHhhhhhHhhhhhhhcCcCC
Q 039800 205 RDSSVVNMILTVLHILFIAFVILMGFWK-DP--KNPSGFFP-YGAKGVFNGAAMV-YLSYIGYDAVSTMAEEVKNPVK 277 (576)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~--~~~~~~~~-~g~~~~~~~~~~~-~~~f~G~e~~~~~~~E~k~p~r 277 (576)
|...+++.+...+.++..+.+.+..+.. +. ++.....+ ....+++.++... .+...+.-..+.++.+.|++++
T Consensus 162 ~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~ 239 (501)
T 2jln_A 162 TFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPN 239 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcc
Confidence 9999999999888877776666555443 32 11111111 1122344444332 2222333446678888888654
|
| >3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-05 Score=85.33 Aligned_cols=280 Identities=13% Similarity=0.137 Sum_probs=139.4
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
.|+++++......++..+++..+...+..... .|.. ..+.|. +.+.....+..+...-.+. +.-..++|.++.||+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 47799998888777777776666655544433 4543 222222 2222223333333333333 345799999999999
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHH--HHHHHHHHhcchhhH
Q 039800 132 FAAFLTGSNLILEYV-MSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVV--LVITFVICYSTRDSS 208 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~ 208 (576)
....+.+....+.+. ...+......+..++..++.+. ..++++. +...+...-|.|...
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi~~------------------~~~i~i~~~i~~~Yt~~GGl~aV~ 157 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPL------------------MYSILGLALFALVYSIYGGLSAVV 157 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCH------------------HHHHHHHHHHHHHTTC------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------------------HHHHHHHHHHHHHHHHhcchHHHH
Confidence 887777765554443 3344555555666777776432 1122221 122223344667666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-----------------CCCCCCCC----CC-----CchhHHHHHHHHHHHHHhhh
Q 039800 209 VVNMILTVLHILFIAFVILMGFWK-----------------DPKNPSGF----FP-----YGAKGVFNGAAMVYLSYIGY 262 (576)
Q Consensus 209 ~~~~~~~~~~l~~~~~~~i~~~~~-----------------~~~~~~~~----~~-----~g~~~~~~~~~~~~~~f~G~ 262 (576)
....+-..+.++..+++.+.++.. +++.+..+ .+ .++...+.+....-..|.|.
T Consensus 158 ~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~ 237 (530)
T 3dh4_A 158 WTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGF 237 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHcC
Confidence 665555555544443333322211 11111111 11 01111111221222344554
Q ss_pred hh-HhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHH---HHHHHhccc----------------CCcCCCCchHHHhhcc
Q 039800 263 DA-VSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLM---AASMSMLMP----------------YDMIDAEAPFSGAFSG 322 (576)
Q Consensus 263 e~-~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~---~~~~~~~~~----------------~~~~~~~~p~~~~~~~ 322 (576)
+. ..+=.=..||+ |+..|+..++.+....+.++. -++.....+ ++..+++..++...+
T Consensus 238 ~q~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~- 315 (530)
T 3dh4_A 238 NQYIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ- 315 (530)
T ss_dssp TCHHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT-
T ss_pred CHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH-
Confidence 42 33333345775 567788877765543332211 111111110 111233455655554
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039800 323 KSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYM 357 (576)
Q Consensus 323 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 357 (576)
.++ +++..++....+.+.+++..+.+++.|-.+
T Consensus 316 -~lp-~~l~Gl~~a~llAA~mST~ss~l~s~st~~ 348 (530)
T 3dh4_A 316 -FLP-VGVKGVVFAALAAAIVSSLASMLNSTATIF 348 (530)
T ss_dssp -TCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -Hcc-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 555 778888888888888888888888877664
|
| >2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.2e-05 Score=81.46 Aligned_cols=282 Identities=12% Similarity=0.126 Sum_probs=143.5
Q ss_pred ccccChHHHHHHHhhhhhhhhHHhchHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHhhhcCcCCCchhHHHHHHhch
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPA-IVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGE 131 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~li~~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~g~ 131 (576)
.|+++++....-.++..+++..+...+..... .|.. .++.|. +.+..+..++.+...-.+. +.-..++|.++.||+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHccC
Confidence 36788887766666666776666554444333 4543 222222 2222233344444443333 345799999999999
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHhcchhhHHH
Q 039800 132 FAAFLTGSNLILEYV-MSNAAVARGFASYFGTAIGVPTAKWRLKVDGLPDGFNEIDVLAVAVVLVITFVICYSTRDSSVV 210 (576)
Q Consensus 132 ~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (576)
....+.+....+.+. ...+......+..++..++.+. + ..+.+..++...+...-|.|.....
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi~~--~--------------~~i~i~~~i~~~Yt~~GGl~av~~T 188 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPL--M--------------YSILGLALFALVYSIYGGLSAVVWT 188 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCCH--H--------------HHHHHHHHHHHHHHHTTC---CCHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH--H--------------HHHHHHHHHHHHHHHhcchHHHHHH
Confidence 887777665554433 3445555556667777776432 1 0122222233444455688877666
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-----------------CCCCCCCCCCCc--------hhHHHH-HHHHHHHHHhhhh-
Q 039800 211 NMILTVLHILFIAFVILMGFWK-----------------DPKNPSGFFPYG--------AKGVFN-GAAMVYLSYIGYD- 263 (576)
Q Consensus 211 ~~~~~~~~l~~~~~~~i~~~~~-----------------~~~~~~~~~~~g--------~~~~~~-~~~~~~~~f~G~e- 263 (576)
+.+-..+.++..+++.+.++.. .++.+..+.+.+ +..... +.......+.|.+
T Consensus 189 D~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q 268 (593)
T 2xq2_A 189 DVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQ 268 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCCh
Confidence 6666666555544433332211 122222111111 111111 1222233455555
Q ss_pred hHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHH-HHHH--hc-cc--------------CCcC-CCCchHHHhhccCC
Q 039800 264 AVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMA-ASMS--ML-MP--------------YDMI-DAEAPFSGAFSGKS 324 (576)
Q Consensus 264 ~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~-~~~~--~~-~~--------------~~~~-~~~~p~~~~~~~~~ 324 (576)
...+-.=+.||+ |+..|+...+.+...++.++.. ..+. .. .+ ..+. +++..++...+ .
T Consensus 269 ~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~~--~ 345 (593)
T 2xq2_A 269 YIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ--F 345 (593)
T ss_dssp SHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHHH--T
T ss_pred HHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHHH--H
Confidence 245555677886 5788888877666444433221 1111 11 00 1122 23344444443 6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039800 325 DGWKWVSNVIGVGASFGILTSLLVAMLGQARYM 357 (576)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 357 (576)
.+ +++..++....+.+.+++..+.+.+.|-.+
T Consensus 346 lp-~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 346 LP-VGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 788888888888888888888888777654
|
| >2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... | Back alignment and structure |
|---|
Probab=97.90 E-value=0.028 Score=58.94 Aligned_cols=303 Identities=13% Similarity=0.125 Sum_probs=153.1
Q ss_pred ChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHH----HHHHHHHHHHHHHhhhcCcCCCchhHHHHHH---h
Q 039800 57 RWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIA----GLCALLSAFCYTEFAVDMPVAGGAFSYLRVT---F 129 (576)
Q Consensus 57 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~----~l~~~~~a~~~~el~~~~p~~Gg~y~~~~~~---~ 129 (576)
+..+.+..++|..+|.|-.-..+.....++|.+-++.|++. ++..+..=+++++.+++..+.|..-.|-+-. .
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~~~ 89 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRF 89 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCCcC
Confidence 45667777888899999888888888887776644444443 3444445555666555555556555553321 1
Q ss_pred chhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCc------------ccccccCCC-----CCCCchh-h
Q 039800 130 GEFAAF---LTGSNLILEYVMSNAAVARGFASYFGTAIG--VPTA------------KWRLKVDGL-----PDGFNEI-D 186 (576)
Q Consensus 130 g~~~g~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------------~~~~~~~~~-----~~~~~~~-~ 186 (576)
.+..|+ +.++.....|....+-...-+...+..-++ ...+ .+...+... ..+.+.. .
T Consensus 90 ~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~~~~ 169 (519)
T 2a65_A 90 AKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 169 (519)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccHHHH
Confidence 122222 222222222322222222111111221111 0000 000000000 0000111 1
Q ss_pred HHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHHHHHHhhccCC-C--C-------CC-CCCCC-chhHHHHHHH
Q 039800 187 VLAVAVVLVITFVICYST-RDSSVVNMILTVLHILFIAFVILMGFWKDP-K--N-------PS-GFFPY-GAKGVFNGAA 253 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~-~--~-------~~-~~~~~-g~~~~~~~~~ 253 (576)
+..+++.++..++..+|+ |...|...++...-.+.++++.+-++..+. . . +. .+..- +...+..+..
T Consensus 170 ~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~g 249 (519)
T 2a65_A 170 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVG 249 (519)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHH
Confidence 233344455666778899 789999999988888777777776655411 0 0 01 11111 1344677888
Q ss_pred HHHHHH-hhhhhHhhhhhhhcCcCCchhhHHHHHHHHHHHHHHHHHH------HHH-hccc-CCcC-CCC-c-----hHH
Q 039800 254 MVYLSY-IGYDAVSTMAEEVKNPVKDIPIGVSGSVIIVTVLYCLMAA------SMS-MLMP-YDMI-DAE-A-----PFS 317 (576)
Q Consensus 254 ~~~~~f-~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~i~y~~~~~------~~~-~~~~-~~~~-~~~-~-----p~~ 317 (576)
.++|+. .|+.....++.-.|+ +.|++|.-....+.-...-++..+ ... ...+ .++. +++ . -++
T Consensus 250 Q~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~~~~~v~~~G~pgL~Fi~~P 328 (519)
T 2a65_A 250 QIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLP 328 (519)
T ss_dssp HHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHCSSHHHHTHHH
T ss_pred HHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHhcCCCCceeHHHHH
Confidence 899998 588888888888876 567888766655554444332211 111 1122 1111 222 1 356
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCC
Q 039800 318 GAFSGKSDGWKWVSNVIGVGASFGILTSLLVAMLGQARYMCVIGRSSV 365 (576)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 365 (576)
+++.+ .-+++....+..++.+.+.+++..+ .-...-+.-+|..
T Consensus 329 ~af~~-mp~g~~~~~lFF~~l~~agltS~i~----~~E~~vt~l~D~~ 371 (519)
T 2a65_A 329 AIFSQ-TAGGTFLGFLWFFLLFFAGLTSSIA----IMQPMIAFLEDEL 371 (519)
T ss_dssp HHHTT-STTHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTS
T ss_pred HHHHh-CCCccchHHHHHHHHHHHHHHHHHH----HhhHhHHHHHHhh
Confidence 77874 4444555555555555555555444 3344444445543
|
| >4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A | Back alignment and structure |
|---|
Probab=94.63 E-value=5 Score=41.74 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=20.8
Q ss_pred CccccChHHHHHHHhhhhhhhhHHh
Q 039800 52 MRKTLRWYDLVCFGIGGMVGAGVFV 76 (576)
Q Consensus 52 l~r~l~~~~~~~~~~~~~ig~gi~~ 76 (576)
-|.+++.++.++|.++.-+|.|+.+
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~F 116 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLMF 116 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHHH
T ss_pred CCCCCcchHHHHHHHHHhhcchhee
Confidence 3567999999999999988888764
|
| >2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=6.2 Score=40.77 Aligned_cols=24 Identities=8% Similarity=0.115 Sum_probs=19.9
Q ss_pred ccccChHHHHHHHhhhhhhhhHHh
Q 039800 53 RKTLRWYDLVCFGIGGMVGAGVFV 76 (576)
Q Consensus 53 ~r~l~~~~~~~~~~~~~ig~gi~~ 76 (576)
|.+++.++.++|.++.-+|.|+.+
T Consensus 88 kPefs~~sW~aMlF~aGmGiGl~f 111 (509)
T 2wsw_A 88 KPEFSTASWIFMMFASCTSAAVLF 111 (509)
T ss_dssp CCSSCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCccchHHHHHHHHhhhhHHhh
Confidence 457999999999999888887655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 576 | |||
| d2a65a1 | 509 | Na(+):neurotransmitter symporter homologue LeuT {A | 97.25 |
| >d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: SNF-like superfamily: SNF-like family: SNF-like domain: Na(+):neurotransmitter symporter homologue LeuT species: Aquifex aeolicus [TaxId: 63363]
Probab=97.25 E-value=0.13 Score=51.78 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=39.6
Q ss_pred ChHHHHHHHhhhhhhhhHHhchHHhhhhccchHHHHHHHHH----HHHHHHHHHHHHHhhhcCc
Q 039800 57 RWYDLVCFGIGGMVGAGVFVTTGRASRLNAGPAIVISYAIA----GLCALLSAFCYTEFAVDMP 116 (576)
Q Consensus 57 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~li~----~l~~~~~a~~~~el~~~~p 116 (576)
+..+.+.-.+|..+|.|-+-..+.....++|..-++.|++. ++..+.+=++.++.+++-|
T Consensus 6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~ 69 (509)
T d2a65a1 6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQG 69 (509)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 45677788889999999888888887776776644444433 3334445555666655555
|