Citrus Sinensis ID: 039811

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
MSPAPGLQAPLLPNSKTEKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFNGFELDKPSDMITAVRISLVLCTAIYFSVGLFGYLLFGESIMSDILVNFDQSSGSAIIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVMMVLAVVTSTIAISTNIYGSISNKS
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccEEEEEEEHHHHHcccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccccccccccHHHHEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHEEccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHEEccccHHHHHHHHcccccccccEEEEEEEEEEHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcccHHHEEcccccHHHHHHHHHHHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
mspapglqapllpnsktekrpwvsgaVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYThagetstyAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVAICSVMAIYAvgegkskspkllpqldnhvslfdlfpavpvIVTAFTFYfngfeldkpsdmITAVRISLVLCTAIYFSVGLFGYLLFGESIMSDILVnfdqssgsaiIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLrdvhgisttgDRIIATVMMVLAVVTSTIAISTNIYGSISNKS
mspapglqapllpnsktekrpwvSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFNGFELDKPSDMITAVRISLVLCTAIYFSVGLFGYLLFGESIMSDILVNFDQSSGSAIIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVMMVLAVVTStiaistniygsisnks
MSPAPGLQAPLLPNSKTEKRPWVSGAVFNVatsiigagimsiaatVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLiiffiiiGSVHLGVLQEWCGFHWWNTRVIallfvmvfvmlplalfGLVGYSAISVLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFNGFELDKPSDMITAVRISLVLCTAIYFSVGLFGYLLFGESIMSDILVNFDQSSGSAIIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVMMVLAVVTSTIAISTNIYGSISNKS
********************PWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVAICSVMAIYAVGEGK****KLLPQLDNHVSLFDLFPAVPVIVTAFTFYFNGFELDKPSDMITAVRISLVLCTAIYFSVGLFGYLLFGESIMSDILVNFDQSSGSAIIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVMMVLAVVTSTIAISTNIYG******
**************************VFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFNGFELDKPSDMITAVRISLVLCTAIYFSVGLFGYLLFGESIMSDILVNFDQSSGSAIIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVMMVLAVVTSTIAISTNIYGSISN**
MSPAPGLQAPLLPNSKTEKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFNGFELDKPSDMITAVRISLVLCTAIYFSVGLFGYLLFGESIMSDILVNFDQSSGSAIIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVMMVLAVVTSTIAISTNIYGSISNKS
********************PWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFNGFELDKPSDMITAVRISLVLCTAIYFSVGLFGYLLFGESIMSDILVNFDQSSGSAIIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVMMVLAVVTSTIAISTNIYGSISN**
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MSPAPGLQAPLLPNSKTEKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFNGFELDKPSDMITAVRISLVLCTAIYFSVGLFGYLLFGESIMSDILVNFDQSSGSAIIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVMMVLAVVTSTIAISTNIYGSISNKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query360 2.2.26 [Sep-21-2011]
Q5I012 1090 Putative sodium-coupled n yes no 0.727 0.240 0.258 2e-18
Q5RC98 1121 Putative sodium-coupled n yes no 0.675 0.216 0.253 3e-16
Q9HBR0 1119 Putative sodium-coupled n yes no 0.675 0.217 0.253 3e-16
Q6DEL1465 Putative sodium-coupled n no no 0.738 0.572 0.254 1e-15
Q503G8449 Probable sodium-coupled n no no 0.947 0.759 0.216 2e-13
Q28HE5448 Probable sodium-coupled n yes no 0.911 0.732 0.227 5e-12
Q9DCP2505 Sodium-coupled neutral am no no 0.816 0.582 0.225 2e-10
Q5HZH7432 Putative sodium-coupled n no no 0.808 0.673 0.246 3e-10
Q9JHZ9504 Sodium-coupled neutral am no no 0.797 0.569 0.224 5e-10
Q99624504 Sodium-coupled neutral am no no 0.680 0.486 0.246 6e-10
>sp|Q5I012|S38AA_MOUSE Putative sodium-coupled neutral amino acid transporter 10 OS=Mus musculus GN=Slc38a10 PE=1 SV=2 Back     alignment and function desciption
 Score = 94.0 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 73/282 (25%), Positives = 138/282 (48%), Gaps = 20/282 (7%)

Query: 25  GAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTY 84
           G + NV  SI+G  ++++    K  G++   +L+V  +W+T  S   L++     +  TY
Sbjct: 10  GLITNVVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTY 69

Query: 85  AGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNT-RVIAL 143
           AG+   ++G+AG +  +  ++   LG  I F+++IG +         G     T RV  L
Sbjct: 70  AGLAFHAYGKAGKMLVETSMIGLMLGSCITFYVVIGDLGSNFFAPLLGLQVTRTVRVFLL 129

Query: 144 LFVMVFVMLPLAL-----FGLVGYSAISVLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQ 198
             V +F++LPL+L       +  +SA+++L   +F+    V+ + ++  G   S + L Q
Sbjct: 130 FAVSLFIVLPLSLQRNMMASIQSFSAMALLFYTVFMF---VIVLSSLKHGLF-SGQWLRQ 185

Query: 199 LDNHVSLFDLFPAVPVIVTAFTFYFNGF----ELDKPS--DMITAVRISLVLCTAIYFSV 252
           + +++    +F  VP+   +F            LD+PS   M +    SL + TA Y  V
Sbjct: 186 V-SYIRWEGVFRCVPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTAFYVMV 244

Query: 253 GLFGYLLFGESIMSDILVNFDQSSGSAII---FSYTAAIMIP 291
           G FGY+ F ++   ++L++F  +  + +I   F  + A+  P
Sbjct: 245 GFFGYVSFTDATTGNVLIHFPSNPVTEMIRVGFVMSVAVGFP 286
Putative sodium-dependent amino acid/proton antiporter.
Mus musculus (taxid: 10090)
>sp|Q5RC98|S38AA_PONAB Putative sodium-coupled neutral amino acid transporter 10 OS=Pongo abelii GN=SLC38A10 PE=2 SV=1 Back     alignment and function description
>sp|Q9HBR0|S38AA_HUMAN Putative sodium-coupled neutral amino acid transporter 10 OS=Homo sapiens GN=SLC38A10 PE=1 SV=2 Back     alignment and function description
>sp|Q6DEL1|S38A7_DANRE Putative sodium-coupled neutral amino acid transporter 7 OS=Danio rerio GN=slc38a7 PE=2 SV=1 Back     alignment and function description
>sp|Q503G8|S38A6_DANRE Probable sodium-coupled neutral amino acid transporter 6 OS=Danio rerio GN=slc38a6 PE=2 SV=1 Back     alignment and function description
>sp|Q28HE5|S38A6_XENTR Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1 Back     alignment and function description
>sp|Q9DCP2|S38A3_MOUSE Sodium-coupled neutral amino acid transporter 3 OS=Mus musculus GN=Slc38a3 PE=1 SV=1 Back     alignment and function description
>sp|Q5HZH7|S38A8_MOUSE Putative sodium-coupled neutral amino acid transporter 8 OS=Mus musculus GN=Slc38a8 PE=2 SV=1 Back     alignment and function description
>sp|Q9JHZ9|S38A3_RAT Sodium-coupled neutral amino acid transporter 3 OS=Rattus norvegicus GN=Slc38a3 PE=2 SV=1 Back     alignment and function description
>sp|Q99624|S38A3_HUMAN Sodium-coupled neutral amino acid transporter 3 OS=Homo sapiens GN=SLC38A3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
255559605437 amino acid transporter, putative [Ricinu 1.0 0.823 0.606 1e-136
224112417435 amino acid transporter [Populus trichoca 0.997 0.825 0.595 1e-132
225448601443 PREDICTED: probable sodium-coupled neutr 1.0 0.812 0.577 1e-126
449491678434 PREDICTED: LOW QUALITY PROTEIN: sodium-c 0.997 0.827 0.524 1e-114
449457431434 PREDICTED: sodium-coupled neutral amino 0.997 0.827 0.521 1e-113
357492903429 Sodium-coupled neutral amino acid transp 0.966 0.811 0.540 1e-111
356501191434 PREDICTED: putative sodium-coupled neutr 0.986 0.817 0.553 1e-108
356554648432 PREDICTED: probable sodium-coupled neutr 0.986 0.821 0.546 1e-107
357461473 586 Sodium-coupled neutral amino acid transp 1.0 0.614 0.520 1e-107
357461471 577 Sodium-coupled neutral amino acid transp 1.0 0.623 0.519 1e-104
>gi|255559605|ref|XP_002520822.1| amino acid transporter, putative [Ricinus communis] gi|223539953|gb|EEF41531.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 265/437 (60%), Positives = 311/437 (71%), Gaps = 77/437 (17%)

Query: 1   MSPAPGLQAPLLPNSKTEKRPW--VSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLI 58
           MSPA GL  PLLP  + +++    VSGAVFNV+TSIIGAGIMSI AT+KVLGVIPAFVLI
Sbjct: 1   MSPASGLNIPLLPEHRAKEKHQASVSGAVFNVSTSIIGAGIMSIPATLKVLGVIPAFVLI 60

Query: 59  VIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFII 118
           V+IAWL D+SVE LMRYTH+GE++TYAGVMRE+FG  GS A Q+CVMITNLGCLII+ II
Sbjct: 61  VVIAWLADISVEFLMRYTHSGESTTYAGVMREAFGPLGSAAVQICVMITNLGCLIIYLII 120

Query: 119 I----------GSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVG----YSA 164
           I          GSVHLGVLQEW G HWWN+R  AL F++VFVMLPL L+  V      SA
Sbjct: 121 IGDVLSGNEQEGSVHLGVLQEWFGIHWWNSRAFALFFIVVFVMLPLVLYRRVESLRFSSA 180

Query: 165 ISVLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN 224
           ++V+LAV+FV ICSVMAI A+ EGK+KSP+LLP LDN VS FDLF AVPVIVTAFTF+FN
Sbjct: 181 MAVILAVVFVGICSVMAISAIIEGKTKSPRLLPHLDNQVSFFDLFTAVPVIVTAFTFHFN 240

Query: 225 ----GFELDKPSDMITAVRISLVLCTAIYFSVGLFGYLLFGESIMSDILVNFDQSSGSA- 279
               GFEL KPSDMI+AVRISLV+C AIYF++G+FGYLLFGESIM+DILVNFD+SS +A 
Sbjct: 241 VHPIGFELGKPSDMISAVRISLVICAAIYFAIGIFGYLLFGESIMTDILVNFDRSSDTAA 300

Query: 280 -------IIFSYTAAIMI------------------------------------------ 290
                  +  SY   +M+                                          
Sbjct: 301 GALLNDIVRLSYALHLMLVFPLLNFSLRANIDEFLFPNKPLLSKDTTRFVSLTLILLTLI 360

Query: 291 -------PDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTGDRIIATVMMVLAVVT 343
                  P+IWYFFQF+GST+AVCLAFIFPG IVLRDVH ISTT DRI+A +M+VLAVVT
Sbjct: 361 YLMAIAIPNIWYFFQFVGSTTAVCLAFIFPGAIVLRDVHRISTTKDRIVAPIMIVLAVVT 420

Query: 344 STIAISTNIYGSISNKS 360
           S+IA+S+NIY    NKS
Sbjct: 421 SSIALSSNIYSMTRNKS 437

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224112417|ref|XP_002316182.1| amino acid transporter [Populus trichocarpa] gi|222865222|gb|EEF02353.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225448601|ref|XP_002278665.1| PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Vitis vinifera] gi|297736531|emb|CBI25402.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449491678|ref|XP_004158971.1| PREDICTED: LOW QUALITY PROTEIN: sodium-coupled neutral amino acid transporter 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449457431|ref|XP_004146452.1| PREDICTED: sodium-coupled neutral amino acid transporter 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357492903|ref|XP_003616740.1| Sodium-coupled neutral amino acid transporter [Medicago truncatula] gi|355518075|gb|AES99698.1| Sodium-coupled neutral amino acid transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|356501191|ref|XP_003519410.1| PREDICTED: putative sodium-coupled neutral amino acid transporter 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356554648|ref|XP_003545656.1| PREDICTED: probable sodium-coupled neutral amino acid transporter 6-like [Glycine max] Back     alignment and taxonomy information
>gi|357461473|ref|XP_003601018.1| Sodium-coupled neutral amino acid transporter [Medicago truncatula] gi|355490066|gb|AES71269.1| Sodium-coupled neutral amino acid transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|357461471|ref|XP_003601017.1| Sodium-coupled neutral amino acid transporter [Medicago truncatula] gi|355490065|gb|AES71268.1| Sodium-coupled neutral amino acid transporter [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
TAIR|locus:2078381435 AT3G56200 [Arabidopsis thalian 0.611 0.505 0.432 3.7e-68
TAIR|locus:2063068440 AT2G40420 "AT2G40420" [Arabido 0.616 0.504 0.446 6e-68
TAIR|locus:2166615456 AT5G38820 "AT5G38820" [Arabido 0.713 0.563 0.298 2.6e-45
TAIR|locus:2198968489 AT1G80510 [Arabidopsis thalian 0.8 0.588 0.312 3.6e-34
TAIR|locus:2102926460 AT3G30390 [Arabidopsis thalian 0.902 0.706 0.283 9.1e-29
RGD|1560237432 Slc38a8 "solute carrier family 0.386 0.321 0.243 1.6e-10
ZFIN|ZDB-GENE-040801-266465 slc38a7 "solute carrier family 0.972 0.752 0.202 2.2e-09
UNIPROTKB|F1SRV0456 SLC38A6 "Uncharacterized prote 0.533 0.421 0.244 5.8e-09
UNIPROTKB|F1P9B0428 SLC38A6 "Uncharacterized prote 0.513 0.432 0.217 2.6e-08
MGI|MGI:2685433432 Slc38a8 "solute carrier family 0.386 0.321 0.236 3.5e-08
TAIR|locus:2078381 AT3G56200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 454 (164.9 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
 Identities = 103/238 (43%), Positives = 135/238 (56%)

Query:     5 PGLQAPLLPN---SKTEKR-PWVSGAVFNVXXXXXXXXXXXXXXXVKVLGVIPAFVLIVI 60
             P ++  LLP    S +E      SG VFNV                KVLG++PAF++I I
Sbjct:     3 PQIKTHLLPKQEPSSSENHGSSTSGIVFNVSTSIIGAGIMSMPAAFKVLGIVPAFLIITI 62

Query:    61 IAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVAAQLCVMITNLGCLXXXXXXXG 120
             IAWL+ +SV  LM+ T AGE++TYAGVM+ESFG+ GS+A Q+  M+   GC+       G
Sbjct:    63 IAWLSTISVGFLMKSTLAGESTTYAGVMKESFGKTGSIAVQIATMVATFGCMIIFSIIIG 122

Query:   121 SV----------HLGVLQEWCGFHWWNTRVIXXXXXXXXXXX----XXXXXGLVGYSAIS 166
              V          H+GVLQEW G +WWNTR+                      L   SA+S
Sbjct:   123 DVLSGNENGGPEHIGVLQEWFGSYWWNTRIFALLFVYGFVLLPLVLRRRVERLAISSAVS 182

Query:   167 VLLAVMFVAICSVMAIYAVGEGKSKSPKLLPQLDNHVSLFDLFPAVPVIVTAFTFYFN 224
              LLAV+FV I SV+AI A+  G++K+P+L P+L N  S + LF A PVIVTAFTF+FN
Sbjct:   183 FLLAVLFVVISSVLAISALVNGQTKNPRLFPELSNGGSFWQLFTASPVIVTAFTFHFN 240
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2063068 AT2G40420 "AT2G40420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166615 AT5G38820 "AT5G38820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198968 AT1G80510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102926 AT3G30390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1560237 Slc38a8 "solute carrier family 38, member 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-266 slc38a7 "solute carrier family 38, member 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SRV0 SLC38A6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P9B0 SLC38A6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2685433 Slc38a8 "solute carrier family 38, member 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 2e-15
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 4e-15
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 3e-08
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 5e-07
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 7e-05
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 64/271 (23%), Positives = 116/271 (42%), Gaps = 18/271 (6%)

Query: 26  AVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEIL--MRYTHAGET-- 81
           AVFN+  +IIGAG++S+    K LG IP  +L+VI+  ++  ++ +L             
Sbjct: 8   AVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVDKVKGK 67

Query: 82  --STYAGVMRESFGRAGSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTR 139
              +Y  +    FG  G +     +++   G  I + I  G     +   +      +  
Sbjct: 68  RRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFDTCHISLV 127

Query: 140 VIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVAICS--VMAIYAVGEGKSKSPKLLP 197
              ++F ++F+  PL+    +   +I  L+A +        V+++  +G   ++    L 
Sbjct: 128 YFIIIFGLIFI--PLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVLTAQGVGSLG 185

Query: 198 QLDNHVSLFDLFPAVPVIVTAFTFYFNGFE----LDKPSDMITAVRISLV---LCTAIYF 250
              N   L  LF A+ +IV AF  +         +  PS      ++ L    + T +Y 
Sbjct: 186 AKTNI-KLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAIIIVTVLYI 244

Query: 251 SVGLFGYLLFGESIMSDILVNFDQSSGSAII 281
            VGL GYL FG ++  +IL+N  +S     I
Sbjct: 245 LVGLVGYLAFGNNVKGNILLNLPKSDWLIDI 275

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 360
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
PLN03074473 auxin influx permease; Provisional 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.9
PRK09664415 tryptophan permease TnaB; Provisional 99.9
PRK10483414 tryptophan permease; Provisional 99.89
PRK15132403 tyrosine transporter TyrP; Provisional 99.89
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.86
PRK13629443 threonine/serine transporter TdcC; Provisional 99.86
TIGR00814397 stp serine transporter. The HAAAP family includes 99.77
PRK10655438 potE putrescine transporter; Provisional 99.34
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.3
PRK10644445 arginine:agmatin antiporter; Provisional 99.3
TIGR00905 473 2A0302 transporter, basic amino acid/polyamine ant 99.28
TIGR03810 468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.26
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.24
PRK11021410 putative transporter; Provisional 99.14
TIGR00930 953 2a30 K-Cl cotransporter. 99.12
TIGR00909429 2A0306 amino acid transporter. 99.12
PRK11387 471 S-methylmethionine transporter; Provisional 99.09
PF03845320 Spore_permease: Spore germination protein; InterPr 99.08
PRK15049 499 L-asparagine permease; Provisional 99.06
PRK10746 461 putative transport protein YifK; Provisional 99.06
TIGR00911 501 2A0308 L-type amino acid transporter. 99.06
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.05
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.05
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.04
PRK10249458 phenylalanine transporter; Provisional 99.04
PRK10836 489 lysine transporter; Provisional 99.02
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.02
KOG3832319 consensus Predicted amino acid transporter [Genera 99.02
PRK10238456 aromatic amino acid transporter; Provisional 99.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 98.99
KOG1287479 consensus Amino acid transporters [Amino acid tran 98.98
TIGR00913 478 2A0310 amino acid permease (yeast). 98.94
TIGR00906 557 2A0303 cationic amino acid transport permease. 98.88
PRK10580457 proY putative proline-specific permease; Provision 98.87
PRK10197 446 gamma-aminobutyrate transporter; Provisional 98.69
COG0531 466 PotE Amino acid transporters [Amino acid transport 98.67
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 98.62
TIGR00907 482 2A0304 amino acid permease (GABA permease). 98.59
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.39
TIGR03428 475 ureacarb_perm permease, urea carboxylase system. A 98.37
TIGR03813 474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.3
PRK15238 496 inner membrane transporter YjeM; Provisional 98.3
PF00324 478 AA_permease: Amino acid permease; InterPro: IPR004 98.2
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.12
PRK11375484 allantoin permease; Provisional 98.07
COG0833 541 LysP Amino acid transporters [Amino acid transport 97.99
COG3949349 Uncharacterized membrane protein [Function unknown 97.99
KOG1289 550 consensus Amino acid transporters [Amino acid tran 97.79
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.76
COG1457442 CodB Purine-cytosine permease and related proteins 97.76
KOG1286 554 consensus Amino acid transporters [Amino acid tran 97.69
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.58
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.18
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.12
COG0591 493 PutP Na+/proline symporter [Amino acid transport a 97.03
PRK09442483 panF sodium/panthothenate symporter; Provisional 96.99
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.97
PRK15015 701 carbon starvation protein A; Provisional 96.89
TIGR00813407 sss transporter, SSS family. have different number 96.89
PRK11017404 codB cytosine permease; Provisional 96.75
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 96.63
COG1966 575 CstA Carbon starvation protein, predicted membrane 96.62
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.13
PRK12488 549 acetate permease; Provisional 94.86
PRK10484 523 putative transporter; Provisional 94.82
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.33
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 93.47
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 93.44
KOG1288 945 consensus Amino acid transporters [Amino acid tran 93.34
TIGR02121 487 Na_Pro_sym sodium/proline symporter. This family c 93.33
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 93.1
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 92.1
PRK00701439 manganese transport protein MntH; Reviewed 91.89
PRK09395 551 actP acetate permease; Provisional 91.43
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 90.33
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 90.24
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 90.13
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 87.77
PRK15433439 branched-chain amino acid transport system 2 carri 87.6
PRK15419 502 proline:sodium symporter PutP; Provisional 87.21
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 86.05
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 81.86
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.7e-51  Score=397.42  Aligned_cols=334  Identities=21%  Similarity=0.330  Sum_probs=264.0

Q ss_pred             CCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHcChhHHHH
Q 039811           20 RPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHAGETSTYAGVMRESFGRAGSVA   99 (360)
Q Consensus        20 ~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~g~~~   99 (360)
                      .++..++++|++|+++|+|+|+||++|+++||+.|++++++++.++.||.+++.+++++.+..+|+|++++++||+++++
T Consensus        59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~~~  138 (467)
T PTZ00206         59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGSYY  138 (467)
T ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHHHH
Confidence            45668999999999999999999999999999999999999999999999999999998888999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhcccccc---chHHHHHHHHHHHHhhhhhhh----hhhHHHHHHHHHHH
Q 039811          100 AQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWN---TRVIALLFVMVFVMLPLALFG----LVGYSAISVLLAVM  172 (360)
Q Consensus       100 ~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~pl~~~~----l~~~s~~s~~~~~~  172 (360)
                      +++.+.+.++|.|++|+++++|+++++++.....+++.   .++.+..++.+++++|++++|    ++++|.+++. ++.
T Consensus       139 v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~-~i~  217 (467)
T PTZ00206        139 VAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVS-FMV  217 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHH-HHH
Confidence            99999999999999999999999988875422111111   122233445667899999999    6666666653 323


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCC---Cc----ccCccccccccccchhhhhhhhccccc----cccccCCC--chHHHHH
Q 039811          173 FVAICSVMAIYAVGEGKSKSPKL---LP----QLDNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS--DMITAVR  239 (360)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~--~~~~~~~  239 (360)
                      +.++.+  ..+...++..++.+.   .+    +....+...+.+.++++++|||.||.+    ++|||||+  |+.++..
T Consensus       218 ~~vi~i--vi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~  295 (467)
T PTZ00206        218 YLVIVI--VVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLAST  295 (467)
T ss_pred             HHHhhh--hhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHH
Confidence            333222  122222221111110   01    011111223467889999999999999    99999976  8899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCchhhHhhCCC-CCCchH---------------------------------------
Q 039811          240 ISLVLCTAIYFSVGLFGYLLFGESIMSDILVNFD-QSSGSA---------------------------------------  279 (360)
Q Consensus       240 ~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~-~~~~~~---------------------------------------  279 (360)
                      .++.+++++|..+|++||++|||+++++++.|++ .++...                                       
T Consensus       296 ~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~  375 (467)
T PTZ00206        296 IAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAF  375 (467)
T ss_pred             HHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcccCch
Confidence            9999999999999999999999999999999995 444311                                       


Q ss_pred             ----------HHHHHHHHHhcCCHHHHHHhhhhhhhhHHHHHhhhHhhhhh---cCCCCchhhHHHHHHHHHHHHHHHHH
Q 039811          280 ----------IIFSYTAAIMIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRD---VHGISTTGDRIIATVMMVLAVVTSTI  346 (360)
Q Consensus       280 ----------i~~~~~ia~~~p~~~~i~~l~Ga~~~~~l~fi~P~~~~l~~---~~~~~~~~~~~~~~~~~~~G~~~~v~  346 (360)
                                .+.+.++|+++|+++.+++++||++++.++|++|+++|++.   ++++..+++++.++.++++|++.++.
T Consensus       376 ~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~  455 (467)
T PTZ00206        376 WKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVF  455 (467)
T ss_pred             hhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEe
Confidence                      22346789999999999999999999999999999999983   22223445668899999999999999


Q ss_pred             HHHHHHHhhh
Q 039811          347 AISTNIYGSI  356 (360)
Q Consensus       347 g~~~si~~i~  356 (360)
                      |||+++++.+
T Consensus       456 Gt~~si~~~~  465 (467)
T PTZ00206        456 GTGATIWGVT  465 (467)
T ss_pred             cchhHhhHHh
Confidence            9999999976

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.59
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.26
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.12
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 98.46
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 96.12
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 88.47
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.59  E-value=2.2e-12  Score=124.18  Aligned_cols=239  Identities=10%  Similarity=0.054  Sum_probs=154.4

Q ss_pred             CCCCCchHHHHHHHHHHHHhHhHhHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHcChh
Q 039811           17 TEKRPWVSGAVFNVATSIIGAGIMSIAATVKVLGVIPAFVLIVIIAWLTDVSVEILMRYTHA-GETSTYAGVMRESFGRA   95 (360)
Q Consensus        17 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~lv~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~   95 (360)
                      ++|+.+.++.....+++++|+|++.+|....+.|.. +++..++.++........+.|...+ ++.....+..++.+||+
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~   84 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPF   84 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCCh
Confidence            457789999999999999999999999999889974 7788888888888888888887665 45568889999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHhhhchhhhhHhhhccccccchHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Q 039811           96 GSVAAQLCVMITNLGCLIIFFIIIGSVHLGVLQEWCGFHWWNTRVIALLFVMVFVMLPLALFGLVGYSAISVLLAVMFVA  175 (360)
Q Consensus        96 g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~l~~~s~~s~~~~~~~~~  175 (360)
                      ..++......+........+....++.+...++... .++  ....+. +...++..-+.+...|....+..+.....++
T Consensus        85 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~-~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~  160 (445)
T 3l1l_A           85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-DPW--VLTITC-VVVLWIFVLLNIVGPKMITRVQAVATVLALI  160 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-SHH--HHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-ccH--HHHHHH-HHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            999998888887777777777777776655544321 111  111111 1111111122222255555554432222222


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCccc--Cccccccccccchhhhhhhhccccc----cccccCCC-chHHHHHHHHHHHHHH
Q 039811          176 ICSVMAIYAVGEGKSKSPKLLPQL--DNHVSLFDLFPAVPVIVTAFTFYFN----GFELDKPS-DMITAVRISLVLCTAI  248 (360)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~faf~~~~~----~~~m~~~~-~~~~~~~~a~~~~~~~  248 (360)
                      ..++..+......  +.....+..  ....++.++..++....++|.+...    .+|+|||+ +.+|++..+..++.++
T Consensus       161 ~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~  238 (445)
T 3l1l_A          161 PIVGIAVFGWFWF--RGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVC  238 (445)
T ss_dssp             HHHHHHHTTSTTC--CCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--ChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHH
Confidence            2221111111111  111111111  1112345677888899999998887    88999997 7899999999999999


Q ss_pred             HHHHHHHHHhhcCC
Q 039811          249 YFSVGLFGYLLFGE  262 (360)
Q Consensus       249 y~~~g~~gy~~fG~  262 (360)
                      |...........+.
T Consensus       239 y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          239 YVLSTTAIMGMIPN  252 (445)
T ss_dssp             HHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHhcCCH
Confidence            99988877776654
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00