Citrus Sinensis ID: 039837

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540----
Protein Sequence
MAMPNSFSVPVPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEcccccccccccccHHHHHHccccccccccEEEEcccccEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHccEEccccccccHHHHHHHHHHcccEEEEEcccHHHHHHcccccEEEEccccccccccHHHHHHHcccccccccccccccccccccccHHHHccHHHHHHHHHHccccccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHcccccccccHHHHHHHHcccccccccccccccccEEEccccccHHHHHHHHHHccccEEEEccccccHHHHHHccccccccccccccccEEccccccEEEEEcccccccccccccccEEEEcccccHHccccHHHHHHcccccccccccccEEEcccccEEEEccccHHHHccccccccHHHHHHHHccccccEEEEEcccccccccEEEEEEEEcccccccHHHHHHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHcccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHccccEEEEEcccccEEcHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHcccEEEEEcHHHHHHcccccccEEEEcccccHHccccHHHcccccccccccEEEEEEEcccccccccEEEcHHHHHHHHHHHHHccccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHcccEEEcccHHHHHHHHHccccccccccccccEEEEEccccccHHHHHHHHHHccccEEEEcccccccccEEEEEcccccccccccccccccEcccEEEEEEcccccccccccccEEEEEEcccccccccccHHHHHHHEcccccEEEEEEEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHcccccEEEEEEEEEEEcccEEEEEEEEEEccccccHHHHHHHHHHHHcHHcccccEEEEEHcccccccccccHHHcccHHHHHHcc
Coil and Loop (DISEMBL)
mampnsfsvpvplaaahdeehifrsrhpavpvpenvtlpdfvlqdAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAaggvfsganptaHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKagnnfsndddvkqtdlwiskgvmLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHevtfapivppiilslvkdpivdefdlsKLQLRAVMTAAAplapdllssfekkfpgvqvqeaygltehscitltygdpanpsagskknsvgfilpnlevkfinpetgkslpsntpgelcvrsqcvmqgyynneeetartidkngwlhtgdigyidddgdiFIVDRIKELIKYKGFQVAPAELEAILlthpsvedaavvslpdeeageipaacvvmnpnakeseddIMDFVASNVATYKKVRVLHFvdgipkshsgKIMRRILKDKMLEKMRK
Flexible Loop (DISEMBL)
mampnsfsVPVPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALrslglrkgqVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYApiyekvkglGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPetgkslpsntpgeLCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDigyidddgdIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHfvdgipkshsgkimrrilkdkmlekmrk
Low Complexity Region (SEG)
MAMPNSFSVPVPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTaaaplapdllSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTgdigyidddgdifivdriKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK
Disordered region (IsUnstruct)
*********************IF****PAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYG*************VGFILPNLEVKFIN************GELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSV*********************************IMDFVASNVATYKKVRVLHFVDGIPK*********************
Disordered Region (DISOPRED)
****************HDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADK**NNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD**L*****
Disordered Region (DISEMBL)
********VPVPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK
Disordered Region (DISPRO)
*****SFSVPVPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMPNSFSVPVPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	544	2.2.26 [Sep-21-2011]
Q9LQ12	542	4-coumarate--CoA ligase-l	yes	no	0.966	0.970	0.728	0.0
Q7XXL2	555	4-coumarate--CoA ligase-l	yes	no	0.957	0.938	0.641	0.0
P41636	537	4-coumarate--CoA ligase O	N/A	no	0.950	0.962	0.387	1e-103
Q9S725	556	4-coumarate--CoA ligase 2	no	no	0.944	0.924	0.383	1e-103
Q6ETN3	554	Probable 4-coumarate--CoA	no	no	0.959	0.942	0.375	1e-103
Q9M0X9	544	4-coumarate--CoA ligase-l	no	no	0.948	0.948	0.372	1e-102
Q67W82	559	Probable 4-coumarate--CoA	no	no	0.941	0.915	0.386	1e-102
O24145	547	4-coumarate--CoA ligase 1	N/A	no	0.944	0.939	0.370	1e-102
Q9S777	561	4-coumarate--CoA ligase 3	no	no	0.941	0.912	0.383	1e-102
P14912	544	4-coumarate--CoA ligase 1	N/A	no	0.955	0.955	0.388	1e-100

>sp|Q9LQ12|4CLL1_ARATH 4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=2 SV=1

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/538 (72%), Positives = 462/538 (85%), Gaps = 12/538 (2%)

Query: 17  HDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGF 76
            D E+IFRS +P+VP+P+ +TLP+FVLQ  E Y + VAFVEAV+GKA TY  V RDT+  
Sbjct: 7   EDNEYIFRSLYPSVPIPDKLTLPEFVLQGVEEYTENVAFVEAVTGKAVTYGDVVRDTKRL 66

Query: 77  AKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADA 136
           AKAL SLGLRKGQV++VVLPNVAEYGI+ALGIM+AGGVFSGANPTA  SE+KKQV+A+ A
Sbjct: 67  AKALTSLGLRKGQVMVVVLPNVAEYGIIALGIMSAGGVFSGANPTALVSEIKKQVEASGA 126

Query: 137 KLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLW 196
           + I++ A  YEKVK LGLP+IVLGEE+IE A+NW +L+EA DK G+  ++++++ QTDL 
Sbjct: 127 RGIITDATNYEKVKSLGLPVIVLGEEKIEGAVNWKDLLEAGDKCGD--TDNEEILQTDLC 184

Query: 197 ----------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICC 246
                     + KGVMLTHRNL+ANLCSTLF V  EMIGQ+ TLGLIPFFHIYGI GICC
Sbjct: 185 ALPFSSGTTGLQKGVMLTHRNLIANLCSTLFGVRSEMIGQIVTLGLIPFFHIYGIVGICC 244

Query: 247 ATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRA 306
           AT++NKGKVV M+R++LR FL+ALI HEV+FAPIVPPIIL+LVK+PIVDEFDLSKL+L++
Sbjct: 245 ATMKNKGKVVAMSRYDLRIFLNALIAHEVSFAPIVPPIILNLVKNPIVDEFDLSKLKLQS 304

Query: 307 VMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFIL 366
           VMTAAAPLAP+LL++FE KFP VQVQEAYGLTEHSCITLT+GDP      +K+NSVGFIL
Sbjct: 305 VMTAAAPLAPELLTAFEAKFPNVQVQEAYGLTEHSCITLTHGDPEKGQGIAKRNSVGFIL 364

Query: 367 PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYI 426
           PNLEVKFI+P+TG+SLP NT GELCVRSQCVMQGY+ N+EET +TID+ GWLHTGDIGYI
Sbjct: 365 PNLEVKFIDPDTGRSLPKNTSGELCVRSQCVMQGYFMNKEETDKTIDEQGWLHTGDIGYI 424

Query: 427 DDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV 486
           DDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVED AVV LPDEEAGEIPAACVV
Sbjct: 425 DDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDVAVVPLPDEEAGEIPAACVV 484

Query: 487 MNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK 544
           +NP A E E+DI++FVA+NVA YKKVR +HFVD IPKS SGKIMRR+L+DK+L   +K
Sbjct: 485 INPKATEKEEDILNFVAANVAHYKKVRAVHFVDSIPKSLSGKIMRRLLRDKILSINKK 542

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q7XXL2|4CLL9_ORYSJ 4-coumarate--CoA ligase-like 9 OS=Oryza sativa subsp. japonica GN=4CLL9 PE=2 SV=2

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/533 (64%), Positives = 432/533 (81%), Gaps = 12/533 (2%)

Query: 23  FRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSG-KAYTYAQVARDTRGFAKALR 81
           FRSR P V VP+ VT+P+FVL  AE YAD+VA VEA +G ++YTY +VARDT  FA+ALR
Sbjct: 20  FRSRFPPVAVPDGVTVPEFVLDGAEAYADRVALVEAAAGGRSYTYGEVARDTARFARALR 79

Query: 82  SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVS 141
           S+G+RKG VV+V LPN+A Y +V+LGIM+AG VFSG NP A A+E+KKQV+ ++AKL+V+
Sbjct: 80  SVGVRKGHVVVVALPNLAVYPVVSLGIMSAGAVFSGVNPRALAAEIKKQVEDSEAKLVVA 139

Query: 142 YAPIYEKVKGLGLPIIVLGE-ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLW---- 196
               ++KVK  G+P+I +G+ ER+  AI+W  L+ AAD+ G      D  +Q+DL     
Sbjct: 140 NEVAFDKVKDAGVPVIGVGDRERMPGAISWDGLLAAADRTGAGVVPVDAAQQSDLCALPY 199

Query: 197 ------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLR 250
                 +SKGVML+HRNLV+NLCS++F+V PE  GQV TLGL+PFFHIYGITGICCATLR
Sbjct: 200 SSGTTGVSKGVMLSHRNLVSNLCSSMFAVAPETAGQVVTLGLMPFFHIYGITGICCATLR 259

Query: 251 NKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTA 310
           +KG VV+M+RF+LR FL AL+ H V FAP+VPP++L++VK P+ DEFDLS L L++VMTA
Sbjct: 260 HKGTVVVMDRFDLRTFLRALVDHRVMFAPLVPPVMLAMVKSPVADEFDLSDLALKSVMTA 319

Query: 311 AAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLE 370
           AAPLAPDLL++F++KFPGVQV+EAYGLTEHSCITLT+         +KK+SVGFILPNLE
Sbjct: 320 AAPLAPDLLAAFQRKFPGVQVEEAYGLTEHSCITLTHAAGDGHGHVAKKSSVGFILPNLE 379

Query: 371 VKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDG 430
           VKF++P+TG+SLP+NTPGELCVRSQ VMQGYY  +EET RT+D  GWLHTGD+GYID DG
Sbjct: 380 VKFVDPDTGRSLPANTPGELCVRSQSVMQGYYKRKEETERTVDGKGWLHTGDVGYIDGDG 439

Query: 431 DIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN 490
           D+FIVDRIKELIKYKGFQVAPAELEA+LL+HPSVEDAAV  +PDEEAGE+P ACVV    
Sbjct: 440 DVFIVDRIKELIKYKGFQVAPAELEAVLLSHPSVEDAAVFGVPDEEAGEVPVACVVRRHG 499

Query: 491 AKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR 543
           A+E E++I+ +VA  VA+YK+VRVLH VD IPKS SGKI+RR L+D+ +++M+
Sbjct: 500 AEEGEEEIVAYVAERVASYKRVRVLHIVDAIPKSVSGKILRRQLRDEFIKRMK 552

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P41636|4CL_PINTA 4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1

 Score =  376 bits (966), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/534 (38%), Positives = 316/534 (59%), Gaps = 17/534 (3%)

Query: 20  EHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKA 79
           EH++RS+ P + + +++ L  +  +    +AD+   ++  + + Y +++V   +R  A  
Sbjct: 9   EHLYRSKLPDIEISDHLPLHSYCFERVAEFADRPCLIDGATDRTYCFSEVELISRKVAAG 68

Query: 80  LRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLI 139
           L  LGL++GQVV+++LPN  E+  V +G    G + + ANP     E+ KQ  AA A++I
Sbjct: 69  LAKLGLQQGQVVMLLLPNCIEFAFVFMGASVRGAIVTTANPFYKPGEIAKQAKAAGARII 128

Query: 140 VSYAPIYEKVKGL---GLPIIVLGEERIESAINWSELIEAADKAGNNFS-NDDDV----- 190
           V+ A   EK+  L    + +I + +   E   + S L EA +        + DDV     
Sbjct: 129 VTLAAYVEKLADLQSHDVLVITIDDAPKEGCQHISVLTEADETQCPAVKIHPDDVVALPY 188

Query: 191 KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQV--TTLGLIPFFHIYGITGICCAT 248
                 + KGVMLTH+ LV+++   +    P +        L ++P FHIY +  +    
Sbjct: 189 SSGTTGLPKGVMLTHKGLVSSVAQQVDGENPNLYFHSDDVILCVLPLFHIYSLNSVLLCA 248

Query: 249 LRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVM 308
           LR     ++M +F L   L+ +  ++VT APIVPPI+L + K PIV ++D+S   +R +M
Sbjct: 249 LRAGAATLIMQKFNLTTCLELIQKYKVTVAPIVPPIVLDITKSPIVSQYDVS--SVRIIM 306

Query: 309 TAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHS-CITLTYGDPANPSAGSKKNSVGFILP 367
           + AAPL  +L  +  ++FP     + YG+TE    + +      NP    K  S G ++ 
Sbjct: 307 SGAAPLGKELEDALRERFPKAIFGQGYGMTEAGPVLAMNLAFAKNPFP-VKSGSCGTVVR 365

Query: 368 NLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYID 427
           N ++K ++ ETG+SLP N  GE+C+R   +M+GY N+ E TA TID+ GWLHTGD+ YID
Sbjct: 366 NAQIKILDTETGESLPHNQAGEICIRGPEIMKGYINDPESTAATIDEEGWLHTGDVEYID 425

Query: 428 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVM 487
           DD +IFIVDR+KE+IKYKGFQVAPAELEA+L+ HPS+ DAAVV    EEAGE+P A VV 
Sbjct: 426 DDEEIFIVDRVKEIIKYKGFQVAPAELEALLVAHPSIADAAVVPQKHEEAGEVPVAFVVK 485

Query: 488 NPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541
             +++ SE +I +FVA  V  YKK+  ++FVD IPKS SGKI+R+ L+ ++  K
Sbjct: 486 --SSEISEQEIKEFVAKQVIFYKKIHRVYFVDAIPKSPSGKILRKDLRSRLAAK 537

Pinus taeda (taxid: 3352)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9S725|4CL2_ARATH 4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/532 (38%), Positives = 320/532 (60%), Gaps = 18/532 (3%)

Query: 22  IFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALR 81
           IFRSR P + +P ++ L D++ ++   +A K   +   +G+ YTYA V   +R  A  L 
Sbjct: 22  IFRSRLPDIYIPNHLPLHDYIFENISEFAAKPCLINGPTGEVYTYADVHVTSRKLAAGLH 81

Query: 82  SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVS 141
           +LG+++  VV+++LPN  E  +  L     G + + ANP    +E+ KQ  A+ AKLIV+
Sbjct: 82  NLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANPFFTPAEISKQAKASAAKLIVT 141

Query: 142 YAPIYEKVKGL---GLPIIVLGEERI-ESAINWSELIEA----ADKAGNNFSNDDDV--- 190
            +   +K+K L   G+ I+    + I E+ + +SEL ++     D      S +D V   
Sbjct: 142 QSRYVDKIKNLQNDGVLIVTTDSDAIPENCLRFSELTQSEEPRVDSIPEKISPEDVVALP 201

Query: 191 -KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQV--TTLGLIPFFHIYGITGICCA 247
                  + KGVMLTH+ LV ++   +    P +        L ++P FHIY +  I   
Sbjct: 202 FSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFNRDDVILCVLPMFHIYALNSIMLC 261

Query: 248 TLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAV 307
           +LR    +++M +FE+   L+ +   +VT A +VPPI+L++ K P  +++DLS   +R V
Sbjct: 262 SLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIVLAIAKSPETEKYDLS--SVRMV 319

Query: 308 MTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHS-CITLTYGDPANPSAGSKKNSVGFIL 366
            + AAPL  +L  +   KFP  ++ + YG+TE    + ++ G    P    K  + G ++
Sbjct: 320 KSGAAPLGKELEDAISAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFP-VKSGACGTVV 378

Query: 367 PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYI 426
            N E+K ++P+TG SLP N PGE+C+R   +M+GY N+   TA TIDK+GWLHTGD+G+I
Sbjct: 379 RNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPLATASTIDKDGWLHTGDVGFI 438

Query: 427 DDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV 486
           DDD ++FIVDR+KELIKYKGFQVAPAELE++L+ HP + D AVV++ +E+AGE+P A VV
Sbjct: 439 DDDDELFIVDRLKELIKYKGFQVAPAELESLLIGHPEINDVAVVAMKEEDAGEVPVAFVV 498

Query: 487 MNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
            + ++  SED+I  FV+  V  YK++  + F D IPK+ SGKI+R+ L+ ++
Sbjct: 499 RSKDSNISEDEIKQFVSKQVVFYKRINKVFFTDSIPKAPSGKILRKDLRARL 550

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q6ETN3|4CL3_ORYSJ Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1

 Score =  374 bits (961), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/536 (37%), Positives = 314/536 (58%), Gaps = 14/536 (2%)

Query: 14  AAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDT 73
           + A +E  +FRS+ P + +  ++TL ++          +   ++  +G++YTYA+V   +
Sbjct: 3   SVAAEEVVVFRSKLPDIEIDNSMTLQEYCFARMAEVGARPCLIDGQTGESYTYAEVESAS 62

Query: 74  RGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDA 133
           R  A  LR +G+ KG VV+ +L N  E+    LG    G   + ANP     E+ +Q +A
Sbjct: 63  RRAAAGLRRMGVGKGDVVMSLLRNCPEFAFSFLGAARLGAATTTANPFYTPHEVHRQAEA 122

Query: 134 ADAKLIVSYAPIYEKVKGL----GLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDD 189
           A A++IV+ A   EKV+      G+P++ + +   +  + + E++ A +   +   + DD
Sbjct: 123 AGARVIVTEACAVEKVREFAAERGVPVVTV-DGAFDGCVEFREVLAAEELDADADVHPDD 181

Query: 190 V-----KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMI--GQVTTLGLIPFFHIYGIT 242
           V           + KGVMLTHR+L+ ++   +    P +        L L+P FHIY + 
Sbjct: 182 VVALPYSSGTTGLPKGVMLTHRSLITSVAQQVDGENPNLYFSKDDVILCLLPLFHIYSLN 241

Query: 243 GICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKL 302
            +  A LR    +V+M +F+L A +D +  H +T AP VPPI++ + K P V   DL+  
Sbjct: 242 SVLLAGLRAGSTIVIMRKFDLGALVDLVRKHNITIAPFVPPIVVEIAKSPRVTAEDLA-- 299

Query: 303 QLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSV 362
            +R VM+ AAP+  DL  +F  K P   + + YG+TE   +       A      K  S 
Sbjct: 300 SIRMVMSGAAPMGKDLQDAFMAKIPNAVLGQGYGMTEAGPVLAMCLAFAKEPFKVKSGSC 359

Query: 363 GFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGD 422
           G ++ N E+K ++P+TG SL  N  GE+C+R + +M+GY N+ E T  TID++GWLHTGD
Sbjct: 360 GTVVRNAELKIVDPDTGTSLGRNQSGEICIRGEQIMKGYLNDPEATKNTIDEDGWLHTGD 419

Query: 423 IGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPA 482
           IG++DDD +IFIVDR+KE+IKYKGFQV PAELEA+L+THP ++DAAVVS+ D+ AGE+P 
Sbjct: 420 IGFVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPEIKDAAVVSMKDDLAGEVPV 479

Query: 483 ACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
           A +V    ++ +ED+I  FVA  V  YK++  + F D IPK+ SGKI+R+ L+ ++
Sbjct: 480 AFIVRTEGSEITEDEIKKFVAKEVVFYKRINKVFFTDSIPKNPSGKILRKDLRARL 535

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1

 Score =  374 bits (959), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/553 (37%), Positives = 321/553 (58%), Gaps = 37/553 (6%)

Query: 15  AAHDEEHIFRSRHPAVPVPE--NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARD 72
           + +  + I+RS  P + +P+  N +L  F+ +++  Y  K+A  ++ +G + T++Q+   
Sbjct: 4   SGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQLKSA 63

Query: 73  TRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVD 132
               A     LG+RK  VV++  PN  ++ +  L + A GGVF+ ANP    +E+ KQ+ 
Sbjct: 64  VARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSKQIK 123

Query: 133 AADAKLIVSYAPIYEKVKGLGLPIIVLGEE-----------RIESAINWSELIEAADKAG 181
            ++ K+I+S   +++K+KG  LP+++LG +           +I S  N  EL E   +  
Sbjct: 124 DSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPPGSNSKILSFDNVMELSEPVSEYP 183

Query: 182 NNFSNDDDVKQTDL----------WISKGVMLTHRNLVANLCSTLFSVVPEMIGQV--TT 229
                  ++KQ+D             SKGV LTH N +A   S + ++  +++G+     
Sbjct: 184 FV-----EIKQSDTAALLYSSGTTGTSKGVELTHGNFIA--ASLMVTMDQDLMGEYHGVF 236

Query: 230 LGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLV 289
           L  +P FH++G+  I  + L+    +V M RFEL   L  +    VT   +VPP+ L+L 
Sbjct: 237 LCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALS 296

Query: 290 KDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGD 349
           K  IV +FDLS   L+ + + AAPL  DL+    +  P V + + YG+TE +C  ++  D
Sbjct: 297 KQSIVKKFDLS--SLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTE-TCGIVSVED 353

Query: 350 PANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA 409
           P      S   S G + P +E + ++ ETGKS P N  GE+ VR   +M+GY NN + T 
Sbjct: 354 PRLGKRNS--GSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKGYLNNPQATK 411

Query: 410 RTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV 469
            TIDK  W+HTGD+GY ++DG++++VDRIKELIKYKGFQVAPAELE +L++HP + DA V
Sbjct: 412 ETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPDILDAVV 471

Query: 470 VSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKI 529
           +  PDEEAGE+P A VV +PN+  +E DI  F+A  VA YK++R + F+  +PKS +GKI
Sbjct: 472 IPFPDEEAGEVPIAFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVSFISLVPKSAAGKI 531

Query: 530 MRRILKDKMLEKM 542
           +RR L  ++  KM
Sbjct: 532 LRRELVQQVRSKM 544

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q67W82|4CL4_ORYSJ Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/533 (38%), Positives = 306/533 (57%), Gaps = 21/533 (3%)

Query: 22  IFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALR 81
           +FRS+ P + +P ++TL  +  +     A +   ++  +G  Y+Y +V   +R  A  LR
Sbjct: 18  VFRSKLPDIEIPSHLTLQAYCFEKLPEVAARPCLIDGQTGAVYSYGEVEELSRRAAAGLR 77

Query: 82  SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVS 141
            LG+ KG VV+ +L N  E+    LG    G   + ANP     E+ +Q  AA A++IV+
Sbjct: 78  RLGVGKGDVVMSLLRNCPEFAFTFLGAARLGAATTTANPFYTPHEIHRQASAAGARVIVT 137

Query: 142 YAPIYEKVKGL----GLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDL-- 195
            A   EKV+G     G+P++ + +   +  + + E +   D +      D++V   D+  
Sbjct: 138 EACAVEKVRGFAADRGIPVVAV-DGDFDGCVGFGEAM--LDASIEPLDADEEVHPDDVVA 194

Query: 196 --------WISKGVMLTHRNLVANLCSTLFSVVPEMI--GQVTTLGLIPFFHIYGITGIC 245
                    + KGVMLTHR+LV ++   +    P +    +   L L+P FHIY +  + 
Sbjct: 195 LPYSSGTTGLPKGVMLTHRSLVTSVAQQVDGENPNLYFRREDVVLCLLPLFHIYSLNSVL 254

Query: 246 CATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLR 305
            A LR    +V+M +F+L A +D    H VT AP VPPI++ + K P V   DL+   +R
Sbjct: 255 LAGLRAGSAIVIMRKFDLGALVDLTRRHGVTVAPFVPPIVVEIAKSPRVTADDLA--SIR 312

Query: 306 AVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFI 365
            VM+ AAP+  DL  +F  K P   + + YG+TE   +       A      K  S G +
Sbjct: 313 MVMSGAAPMGKDLQDAFMAKIPNAVLGQGYGMTEAGPVLAMCLAFAKEPFEVKSGSCGTV 372

Query: 366 LPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGY 425
           + N E+K ++P+TG +L  N  GE+C+R + +M+GY N+ E T  TIDK GWLHTGDIGY
Sbjct: 373 VRNAELKIVDPDTGATLGRNQSGEICIRGEQIMKGYLNDPESTKNTIDKGGWLHTGDIGY 432

Query: 426 IDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACV 485
           +DDD +IFIVDR+KE+IKYKGFQV PAELEA+L+THP ++DAAVV + DE AGE+P A +
Sbjct: 433 VDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPDIKDAAVVPMIDEIAGEVPVAFI 492

Query: 486 VMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
           V    +  SE++I  FVA  V  YK++  + F D IPKS SGKI+R+ L+ K+
Sbjct: 493 VRIEGSAISENEIKQFVAKEVVFYKRLNKVFFADSIPKSPSGKILRKDLRAKL 545

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/529 (37%), Positives = 315/529 (59%), Gaps = 15/529 (2%)

Query: 22  IFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALR 81
           IFRS+ P + +P+++ L  +  ++   ++ +   +   + + YTYA+V    R  A  L 
Sbjct: 16  IFRSKLPDIYIPKHLPLHSYCFENISEFSSRPCLINGANDQIYTYAEVELTCRKVAVGLN 75

Query: 82  SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVS 141
            LG+++   ++++LPN  E+    +G    G + + ANP    +E+ KQ  A+ AK+I++
Sbjct: 76  KLGIQQKDTIMILLPNSPEFVFAFMGASYLGAISTMANPLFTPAEVVKQAKASSAKIIIT 135

Query: 142 YAPIYEKVKGLG----LPIIVLGEERIESAINWSELIEAADKAGNNFS-NDDDV-----K 191
            +    KVK       + +I + +   E  +++SEL ++ +          DDV      
Sbjct: 136 QSCFVGKVKDYASENDVKVICI-DSAPEGCLHFSELTQSDEHEIPEVKIQPDDVVALPYS 194

Query: 192 QTDLWISKGVMLTHRNLVANLCSTLFSVVPE--MIGQVTTLGLIPFFHIYGITGICCATL 249
                + KGVMLTH+ LV ++   +        M  +   + ++P FHIY +  I    L
Sbjct: 195 SGTTGLPKGVMLTHKGLVTSVAQQVDGENANLYMHSEDVLMCVLPLFHIYSLNSILLCGL 254

Query: 250 RNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMT 309
           R    +++M +F++  FL+ +  ++V+  P VPPI+L++ K PIVD +DLS   +R VM+
Sbjct: 255 RVGAAILIMQKFDIAPFLELIQKYKVSIGPFVPPIVLAIAKSPIVDSYDLS--SVRTVMS 312

Query: 310 AAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNL 369
            AAPL  +L  +   KFP  ++ + YG+TE   +       A      K  + G ++ N 
Sbjct: 313 GAAPLGKELEDAVRTKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNA 372

Query: 370 EVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDD 429
           E+K ++P+TG SLP N PGE+C+R   +M+GY N+ E T RTIDK GWLHTGDIG+ID+D
Sbjct: 373 EMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATTRTIDKEGWLHTGDIGFIDED 432

Query: 430 GDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP 489
            ++FIVDR+KELIKYKGFQVAPAE+EA+LL HP++ DAAVV + DE+AGE+P A VV + 
Sbjct: 433 DELFIVDRLKELIKYKGFQVAPAEIEALLLNHPNISDAAVVPMKDEQAGEVPVAFVVRSN 492

Query: 490 NAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
            +  +ED++ DF++  V  YK+V+ + FV+ +PKS SGKI+R+ L+ ++
Sbjct: 493 GSAITEDEVKDFISKQVIFYKRVKRVFFVETVPKSPSGKILRKDLRARL 541

Nicotiana tabacum (taxid: 4097)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9S777|4CL3_ARATH 4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1

 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/532 (38%), Positives = 317/532 (59%), Gaps = 20/532 (3%)

Query: 22  IFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALR 81
           IFRS+ P + +P ++ L  +  +     +DK   +   +GK+YTY +     R  A  L 
Sbjct: 34  IFRSKLPDIDIPNHLPLHTYCFEKLSSVSDKPCLIVGSTGKSYTYGETHLICRRVASGLY 93

Query: 82  SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVS 141
            LG+RKG V++++L N AE+    +G    G V + ANP   + EL KQ+ ++ AKLI++
Sbjct: 94  KLGIRKGDVIMILLQNSAEFVFSFMGASMIGAVSTTANPFYTSQELYKQLKSSGAKLIIT 153

Query: 142 YAPIYEKVKGLG--LPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTD----- 194
           ++   +K+K LG  L +I   E   E+ + +S LI   D   N F    D+   D     
Sbjct: 154 HSQYVDKLKNLGENLTLITTDEPTPENCLPFSTLI--TDDETNPFQETVDIGGDDAAALP 211

Query: 195 -----LWISKGVMLTHRNLVANLCSTLFSVVPEMI--GQVTTLGLIPFFHIYGITGICCA 247
                  + KGV+LTH++L+ ++   +    P +        L ++P FHIY +  +   
Sbjct: 212 FSSGTTGLPKGVVLTHKSLITSVAQQVDGDNPNLYLKSNDVILCVLPLFHIYSLNSVLLN 271

Query: 248 TLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAV 307
           +LR+   V++M++FE+ A LD +  H VT A +VPP++++L K+P V+ +DLS   +R V
Sbjct: 272 SLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIALAKNPTVNSYDLS--SVRFV 329

Query: 308 MTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHS-CITLTYGDPANPSAGSKKNSVGFIL 366
           ++ AAPL  +L  S  ++ P   + + YG+TE    ++++ G    P   +K  S G ++
Sbjct: 330 LSGAAPLGKELQDSLRRRLPQAILGQGYGMTEAGPVLSMSLGFAKEPIP-TKSGSCGTVV 388

Query: 367 PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYI 426
            N E+K ++ ET  SL  N PGE+C+R Q +M+ Y N+ E T+ TID+ GWLHTGDIGY+
Sbjct: 389 RNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEYLNDPEATSATIDEEGWLHTGDIGYV 448

Query: 427 DDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV 486
           D+D +IFIVDR+KE+IK+KGFQV PAELE++L+ H S+ DAAVV   DE AGE+P A VV
Sbjct: 449 DEDDEIFIVDRLKEVIKFKGFQVPPAELESLLINHHSIADAAVVPQNDEVAGEVPVAFVV 508

Query: 487 MNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
            +     +E+D+ ++VA  V  YK++  + FV  IPKS SGKI+R+ LK K+
Sbjct: 509 RSNGNDITEEDVKEYVAKQVVFYKRLHKVFFVASIPKSPSGKILRKDLKAKL 560

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P14912|4CL1_PETCR 4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1

 Score =  367 bits (941), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/535 (38%), Positives = 323/535 (60%), Gaps = 15/535 (2%)

Query: 16  AHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRG 75
           A  E+ IFRS+ P + +P+++ L  +  ++     DK   +   +G+ +TY+QV   +R 
Sbjct: 6   APKEDLIFRSKLPDIYIPKHLPLHTYCFENISKVGDKSCLINGATGETFTYSQVELLSRK 65

Query: 76  FAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAAD 135
            A  L  LG+++G  ++++LPN  EY    LG    G + + ANP   ++E+ KQ+ A+ 
Sbjct: 66  VASGLNKLGIQQGDTIMLLLPNSPEYFFAFLGASYRGAISTMANPFFTSAEVIKQLKASQ 125

Query: 136 AKLIVSYAPIYEKVKGLG----LPIIVLGEERIESAINWSELIEAADKAGNNFS-NDDDV 190
           AKLI++ A   +KVK       + II + ++  +  +++S+L+EA +        N DDV
Sbjct: 126 AKLIITQACYVDKVKDYAAEKNIQIICI-DDAPQDCLHFSKLMEADESEMPEVVINSDDV 184

Query: 191 -----KQTDLWISKGVMLTHRNLVANLCSTLFSVVPE--MIGQVTTLGLIPFFHIYGITG 243
                      + KGVMLTH+ LV ++   +    P   M  +   + ++P FHIY +  
Sbjct: 185 VALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGDNPNLYMHSEDVMICILPLFHIYSLNA 244

Query: 244 ICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQ 303
           + C  LR    +++M +F++  FL+ +  ++VT  P VPPI+L++ K P+VD++DLS   
Sbjct: 245 VLCCGLRAGVTILIMQKFDIVPFLELIQKYKVTIGPFVPPIVLAIAKSPVVDKYDLS--S 302

Query: 304 LRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVG 363
           +R VM+ AAPL  +L  +   KFP  ++ + YG+TE   +       A      K  + G
Sbjct: 303 VRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPYEIKSGACG 362

Query: 364 FILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDI 423
            ++ N E+K ++PET  SLP N  GE+C+R   +M+GY N+ E T  TID+ GWLHTGDI
Sbjct: 363 TVVRNAEMKIVDPETNASLPRNQRGEICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDI 422

Query: 424 GYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAA 483
           G+IDDD ++FIVDR+KE+IKYKGFQVAPAELEA+LLTHP++ DAAVV + DE+AGE+P A
Sbjct: 423 GFIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLLTHPTISDAAVVPMIDEKAGEVPVA 482

Query: 484 CVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
            VV       +E++I  FV+  V  YK++  + FVD IPKS SGKI+R+ L+ ++
Sbjct: 483 FVVRTNGFTTTEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDLRARI 537

Petroselinum crispum (taxid: 4043)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	544
224053485	545	acyl:coa ligase [Populus trichocarpa] gi	0.965	0.963	0.792	0.0
297738464	555	unnamed protein product [Vitis vinifera]	0.972	0.953	0.783	0.0
359473612	568	PREDICTED: LOW QUALITY PROTEIN: 4-coumar	0.976	0.934	0.780	0.0
255547694	599	AMP dependent CoA ligase, putative [Rici	0.990	0.899	0.763	0.0
449435466	554	PREDICTED: 4-coumarate--CoA ligase-like	0.970	0.953	0.729	0.0
356527153	553	PREDICTED: 4-coumarate--CoA ligase-like	0.965	0.949	0.741	0.0
356569625	553	PREDICTED: 4-coumarate--CoA ligase-like	0.965	0.949	0.732	0.0
15221636	542	4-coumarate--CoA ligase-like 1 [Arabidop	0.966	0.970	0.728	0.0
28628063	551	4-coumarate:CoA ligase-like [Nicotiana s	0.955	0.943	0.738	0.0
147807239	527	hypothetical protein VITISV_001737 [Viti	0.920	0.950	0.735	0.0

>gi|224053485|ref|XP_002297838.1| acyl:coa ligase [Populus trichocarpa] gi|222845096|gb|EEE82643.1| acyl:coa ligase [Populus trichocarpa]

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/539 (79%), Positives = 481/539 (89%), Gaps = 14/539 (2%)

Query: 10  PVPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQV 69
           P+P +A   EEHIFRSRHPAV VP ++TLPDFVLQDAELYADKVAFVEA +GK +TYA+V
Sbjct: 4   PIPCSA--QEEHIFRSRHPAVLVP-DITLPDFVLQDAELYADKVAFVEAATGKTFTYAEV 60

Query: 70  ARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKK 129
            RDTR FAKALRSLGLRKG VV+V LPNVAEYGIVALGIMAAGGVFSGANPTAH SELKK
Sbjct: 61  VRDTRRFAKALRSLGLRKGHVVVVALPNVAEYGIVALGIMAAGGVFSGANPTAHESELKK 120

Query: 130 QVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDD 189
           Q +AADAKLIV+    Y KVKGLGLP+IVLGE  I +A+NW+EL++AAD+AG+  + ++ 
Sbjct: 121 QAEAADAKLIVTNDLNYGKVKGLGLPVIVLGEVCISTAVNWNELLDAADRAGDTLAYEE- 179

Query: 190 VKQTDLW----------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIY 239
           V Q+DL           +SKGVMLTHRNLVANLCS+LFSV PEM+GQV TLGLIPFFHIY
Sbjct: 180 VLQSDLCALPFSSGTTGMSKGVMLTHRNLVANLCSSLFSVGPEMVGQVATLGLIPFFHIY 239

Query: 240 GITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDL 299
           GITGICCATLRNKGKVV+M RFELR FL+ALIT EV+FAPIVPPIIL+LVK+PIV+EFDL
Sbjct: 240 GITGICCATLRNKGKVVVMGRFELRTFLNALITQEVSFAPIVPPIILALVKNPIVEEFDL 299

Query: 300 SKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKK 359
           SKL+L+A+MTAAAPLAP+LL++FE KFPGVQVQEAYGLTEHSCITLT+GDP+     +KK
Sbjct: 300 SKLKLKAIMTAAAPLAPELLTAFENKFPGVQVQEAYGLTEHSCITLTHGDPSKGHGIAKK 359

Query: 360 NSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLH 419
           NSVGF+LPNLE+KFINPE G+SLP NTPGE+CVRSQCVMQGYYNN+EETARTID +GWLH
Sbjct: 360 NSVGFLLPNLEIKFINPENGQSLPENTPGEICVRSQCVMQGYYNNKEETARTIDADGWLH 419

Query: 420 TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGE 479
           TGDIGYID+DGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV LPDEEAGE
Sbjct: 420 TGDIGYIDNDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGE 479

Query: 480 IPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
           IPAACVVM+ +AKESE+DIM+FVASNVA YKKVRV+ FVD IPKS SGKIMRR+LK+KM
Sbjct: 480 IPAACVVMSKSAKESEEDIMEFVASNVAHYKKVRVVQFVDSIPKSPSGKIMRRLLKEKM 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738464|emb|CBI27665.3| unnamed protein product [Vitis vinifera]

 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/540 (78%), Positives = 482/540 (89%), Gaps = 11/540 (2%)

Query: 14  AAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDT 73
           A+A D EHIFRS+H AVPVP+N+TLPDFVLQDAELYA+KVAFVEAV+GK YTY +V RD 
Sbjct: 7   ASAQDNEHIFRSQHQAVPVPDNMTLPDFVLQDAELYAEKVAFVEAVTGKEYTYGEVVRDV 66

Query: 74  RGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDA 133
           R FAKALRS+GLRKG+VV+VVLPNVAEY IVALGIMAAGGVFSGANP  HASE+KKQV+A
Sbjct: 67  RRFAKALRSIGLRKGRVVVVVLPNVAEYAIVALGIMAAGGVFSGANPAGHASEIKKQVEA 126

Query: 134 ADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQT 193
           ADAKL+V+   +YEKVK L LP+IV+GEE +  AINW EL+EAAD+A N  +  +DV Q 
Sbjct: 127 ADAKLVVTNGAMYEKVKSLELPVIVMGEEHVAGAINWGELLEAADRA-NTDTISEDVHQN 185

Query: 194 DLW----------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITG 243
           DL           ISKGVMLTHRNLVANLCSTLFSV PEM+GQ+T LGL+PFFHIYGITG
Sbjct: 186 DLCALPFSSGTTGISKGVMLTHRNLVANLCSTLFSVGPEMVGQITILGLMPFFHIYGITG 245

Query: 244 ICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQ 303
           ICCATLRNKGKVV++ R+ELR FL+ALITHE+TFAPIVPPIIL+LVK+PIV+EFDLS+L+
Sbjct: 246 ICCATLRNKGKVVVIGRYELRTFLNALITHEITFAPIVPPIILALVKNPIVEEFDLSRLK 305

Query: 304 LRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVG 363
           LRAVMTAAAPLAP+LLS+FEKKFP VQVQEAYGLTEHSCITLT+GDP    A +KKNSVG
Sbjct: 306 LRAVMTAAAPLAPELLSAFEKKFPSVQVQEAYGLTEHSCITLTHGDPTKGHATAKKNSVG 365

Query: 364 FILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDI 423
           FILPN+E+KFI+PETG SLP NTPGE+CVRSQCVMQGYY NEEETARTID NGWLHTGDI
Sbjct: 366 FILPNMELKFIDPETGISLPKNTPGEICVRSQCVMQGYYKNEEETARTIDNNGWLHTGDI 425

Query: 424 GYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAA 483
           GYIDDDGD+F+VDRIKELIKYKGFQVAPAELEAILL+HPSVED AVVSLPDEEAGEIPAA
Sbjct: 426 GYIDDDGDVFVVDRIKELIKYKGFQVAPAELEAILLSHPSVEDTAVVSLPDEEAGEIPAA 485

Query: 484 CVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR 543
           CVV+NP AKE+E++I+ +VASNVA YK+VRV+HFV+ IPKS SGKIMRR+L++KMLEKM+
Sbjct: 486 CVVLNPEAKETEEEIVKYVASNVAQYKRVRVVHFVETIPKSPSGKIMRRLLREKMLEKMK 545

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473612|ref|XP_003631332.1| PREDICTED: LOW QUALITY PROTEIN: 4-coumarate--CoA ligase-like 1-like [Vitis vinifera]

 Score =  837 bits (2163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/542 (78%), Positives = 483/542 (89%), Gaps = 11/542 (2%)

Query: 12  PLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVAR 71
           P ++A D EHIFRS+H AVPVP+N+TLPDFVLQDAELYA+KVAFVEAV+GK YTY +V R
Sbjct: 18  PPSSAQDNEHIFRSQHQAVPVPDNMTLPDFVLQDAELYAEKVAFVEAVTGKEYTYGEVVR 77

Query: 72  DTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQV 131
           D R FAKALRS+GLRKG+VV+VVLPNVAEY IVALGIMAAGGVFSGANP  HASE+KKQV
Sbjct: 78  DVRRFAKALRSIGLRKGRVVVVVLPNVAEYAIVALGIMAAGGVFSGANPAGHASEIKKQV 137

Query: 132 DAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVK 191
           +AADAKL+V+   +YEKVK L LP+IV+GEE +  AINW EL+EAAD+A N  +  +DV 
Sbjct: 138 EAADAKLVVTNGAMYEKVKSLELPVIVMGEEHVAGAINWGELLEAADRA-NTDTISEDVH 196

Query: 192 QTDLW----------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGI 241
           Q DL           ISKGVMLTHRNLVANLCSTLFSV PEM+GQ+T LGL+PFFHIYGI
Sbjct: 197 QNDLCALPFSSGTTGISKGVMLTHRNLVANLCSTLFSVGPEMVGQITILGLMPFFHIYGI 256

Query: 242 TGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSK 301
           TGICCATLRNKGKVV++ R+ELR FL+ALITHE+TFAPIVPPIIL+LVK+PIV+EFDLS+
Sbjct: 257 TGICCATLRNKGKVVVIGRYELRTFLNALITHEITFAPIVPPIILALVKNPIVEEFDLSR 316

Query: 302 LQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNS 361
           L+LRAVMTAAAPLAP+LLS+FEKKFP VQVQEAYGLTEHSCITLT+GDP    A +KKNS
Sbjct: 317 LKLRAVMTAAAPLAPELLSAFEKKFPSVQVQEAYGLTEHSCITLTHGDPTKGHATAKKNS 376

Query: 362 VGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTG 421
           VGFILPN+E+KFI+PETG SLP NTPGE+CVRSQCVMQGYY NEEETARTID NGWLHTG
Sbjct: 377 VGFILPNMELKFIDPETGISLPKNTPGEICVRSQCVMQGYYKNEEETARTIDNNGWLHTG 436

Query: 422 DIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIP 481
           DIGYIDDDGD+F+VDRIKELIKYKGFQVAPAELEAILL+HPSVED AVVSLPDEEAGEIP
Sbjct: 437 DIGYIDDDGDVFVVDRIKELIKYKGFQVAPAELEAILLSHPSVEDTAVVSLPDEEAGEIP 496

Query: 482 AACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541
           AACVV+NP AKE+E++I+ +VASNVA YK+VRV+HFV+ IPKS SGKIMRR+L++KMLEK
Sbjct: 497 AACVVLNPEAKETEEEIVKYVASNVAQYKRVRVVHFVETIPKSPSGKIMRRLLREKMLEK 556

Query: 542 MR 543
           M+
Sbjct: 557 MK 558

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547694|ref|XP_002514904.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223545955|gb|EEF47458.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/550 (76%), Positives = 477/550 (86%), Gaps = 11/550 (2%)

Query: 4   PNSFSVPVPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKA 63
           P  F   + +     +EHIFRSR P VPVPE+ T+PDFVLQDAELYADKVAFVEAV+GKA
Sbjct: 38  PALFPCHISIMETLHQEHIFRSRFPPVPVPEDATIPDFVLQDAELYADKVAFVEAVTGKA 97

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH 123
           YTY++V ++TR FAKALRS+GLRKGQVVIVVLPNVAEYGIV LGIMAAGGVFSGANPT  
Sbjct: 98  YTYSEVVKETRRFAKALRSIGLRKGQVVIVVLPNVAEYGIVVLGIMAAGGVFSGANPTGL 157

Query: 124 ASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNN 183
            SE+KKQ +AA+AKLIV+    Y KVKGL LP+IVLGE    +A+NW+EL+ AAD+A + 
Sbjct: 158 ESEIKKQAEAANAKLIVTNDAHYGKVKGLELPVIVLGETSNANAMNWTELLNAADRASDK 217

Query: 184 FSNDDDVKQTDLW----------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLI 233
            S  + + QTDL           ISKGVMLTHRNLVANLCS+LFSV PEMIGQVTTLGLI
Sbjct: 218 -SVHEVIHQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVTTLGLI 276

Query: 234 PFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPI 293
           PFFHIYGITGIC ATLRNKGKVV++NRFELR FL ALIT EVTFAPIVPPIIL+LVKDP+
Sbjct: 277 PFFHIYGITGICFATLRNKGKVVVVNRFELRTFLHALITQEVTFAPIVPPIILTLVKDPV 336

Query: 294 VDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANP 353
           V+EFDL+KL+LRA+MTAAAPLAPDLL++FEKKFPGVQVQEAYG+TEHSCITLT+GDP   
Sbjct: 337 VEEFDLTKLKLRAIMTAAAPLAPDLLTAFEKKFPGVQVQEAYGMTEHSCITLTHGDPDKG 396

Query: 354 SAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTID 413
              +KKNSVGFILPNLEVKFI+P+TG SLP NTPGE+CVRSQCVM GYYNN+EET+RTID
Sbjct: 397 HGIAKKNSVGFILPNLEVKFIDPDTGLSLPKNTPGEVCVRSQCVMIGYYNNKEETSRTID 456

Query: 414 KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLP 473
           K+GWLHTGDIGYIDDDGD+FIVDRIKELIK+KGFQVAPAELEA+LL HPSVEDAAVV LP
Sbjct: 457 KDGWLHTGDIGYIDDDGDMFIVDRIKELIKFKGFQVAPAELEAVLLGHPSVEDAAVVPLP 516

Query: 474 DEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRI 533
           DEEAGEIPAACVV+N  AKESE+DI+++VA NVA YKKVRV+ FVD IPKS SGKIMRR+
Sbjct: 517 DEEAGEIPAACVVINQEAKESEEDILNYVADNVAHYKKVRVVQFVDTIPKSQSGKIMRRL 576

Query: 534 LKDKMLEKMR 543
           LK+KM+EKM+
Sbjct: 577 LKEKMVEKMK 586

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435466|ref|XP_004135516.1| PREDICTED: 4-coumarate--CoA ligase-like 1-like [Cucumis sativus] gi|449521850|ref|XP_004167942.1| PREDICTED: 4-coumarate--CoA ligase-like 1-like [Cucumis sativus]

 Score =  817 bits (2111), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/539 (72%), Positives = 464/539 (86%), Gaps = 11/539 (2%)

Query: 15  AAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTR 74
           +  DEEHIF S+ P V VP ++TLP+FVLQ+AE YA+ VAFVEA+SGKAYTY +V RDT 
Sbjct: 8   SVQDEEHIFCSQLPEVQVPYDITLPEFVLQNAESYAENVAFVEAMSGKAYTYREVLRDTN 67

Query: 75  GFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAA 134
            F+KALRSL L+KG VVIVVLPNVAEY IVALGIMAAGGVFSG NP AH SE+KKQV+ A
Sbjct: 68  RFSKALRSLRLKKGHVVIVVLPNVAEYAIVALGIMAAGGVFSGVNPAAHISEIKKQVEVA 127

Query: 135 DAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTD 194
           +AKL+V+ A  +EKV+ L LP+I+L EE +E A+NW +L+EAAD+AGNNF  ++ +KQTD
Sbjct: 128 EAKLVVTNAANFEKVRELKLPVILLEEELMEGAMNWHKLLEAADRAGNNFVKEE-IKQTD 186

Query: 195 LW----------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGI 244
           L           +SKGVMLTHRNLVAN+CSTL  V  EM G+VTTLGLIPFFHIYGITGI
Sbjct: 187 LCALPFSSGTTGVSKGVMLTHRNLVANMCSTLSGVPQEMEGKVTTLGLIPFFHIYGITGI 246

Query: 245 CCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQL 304
           CC+TLRNKGKVV+M RF+LR F++ALITHE+TFAPIVPPIIL+LVK+PIV+EFDLS L+L
Sbjct: 247 CCSTLRNKGKVVVMGRFDLRTFINALITHEITFAPIVPPIILALVKNPIVEEFDLSSLKL 306

Query: 305 RAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGF 364
           +A+MTAAAPLAP+L ++FE+KFPGV VQEAYGLTEH CITL YG     +  +KKN+VG 
Sbjct: 307 QAIMTAAAPLAPELQTAFERKFPGVDVQEAYGLTEHCCITLNYGSIGKENLSAKKNTVGR 366

Query: 365 ILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIG 424
           ILPNLEVKFI+P+TG+SLP NTPGE+CVRSQCVMQGYY NEEET+RTID  GW+HTGDIG
Sbjct: 367 ILPNLEVKFIDPDTGRSLPKNTPGEICVRSQCVMQGYYKNEEETSRTIDTKGWMHTGDIG 426

Query: 425 YIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAAC 484
           YIDDDG++FIVDRIKELIKYKGFQVAPAELEAILLTHPS+EDAAVV LPDEEAGEIPAA 
Sbjct: 427 YIDDDGNVFIVDRIKELIKYKGFQVAPAELEAILLTHPSIEDAAVVPLPDEEAGEIPAAS 486

Query: 485 VVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR 543
           VVM PN+KE+E+DI+  VASNVA YKKVR++HFVD IPKS SGK+MRR++K+KM+EK+R
Sbjct: 487 VVMAPNSKETEEDIIKHVASNVAHYKKVRLVHFVDTIPKSPSGKVMRRLIKEKMIEKIR 545

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527153|ref|XP_003532177.1| PREDICTED: 4-coumarate--CoA ligase-like 1-like [Glycine max]

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/538 (74%), Positives = 469/538 (87%), Gaps = 13/538 (2%)

Query: 16  AHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRG 75
           A +EEH+FRS++ +VPVP+NVTLP+FVLQ+AELYADKVAFV+AV+GK  T+++V R    
Sbjct: 9   ASEEEHVFRSQYSSVPVPDNVTLPEFVLQNAELYADKVAFVDAVTGKGVTFSEVVRGVHR 68

Query: 76  FAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAAD 135
           F+KALRSLGLRKG VVIVVLPNV EY IVALGIMAAGGVFSGANPT+H SE+KKQ ++AD
Sbjct: 69  FSKALRSLGLRKGLVVIVVLPNVVEYAIVALGIMAAGGVFSGANPTSHVSEIKKQAESAD 128

Query: 136 AKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDL 195
           AKLIV+    YEKVK L LPIIVLG+E +E A+NW++L+EAAD+AG++ + +  ++Q DL
Sbjct: 129 AKLIVTNVTNYEKVKALELPIIVLGDEVVEGAMNWNKLLEAADRAGDDLAREP-IQQNDL 187

Query: 196 W----------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGIC 245
                      +SKGVMLTHRNLVANLCSTLF V  EM GQVTTLGLIPFFHIYGITGIC
Sbjct: 188 CAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFGVTKEMEGQVTTLGLIPFFHIYGITGIC 247

Query: 246 CATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLR 305
           CATL++KGKVV+M RFEL+ FL+ALITHEVTFAPIVPPIIL+LVK+PIVDEFDL KL+L+
Sbjct: 248 CATLKSKGKVVVMGRFELKTFLNALITHEVTFAPIVPPIILTLVKNPIVDEFDLRKLKLQ 307

Query: 306 AVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFI 365
           A+MTAAAPLAP+LL++FE KFPGV VQEAYGLTEHSCITLTY      S  + KNSVGFI
Sbjct: 308 AIMTAAAPLAPELLNAFEHKFPGVAVQEAYGLTEHSCITLTYVQKGLGS--TNKNSVGFI 365

Query: 366 LPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGY 425
           LPNLEVKF++P+TG+SLP NTPGELCVRSQCVMQGYY  E+ETA+TIDKNGWLHTGDIG+
Sbjct: 366 LPNLEVKFVDPDTGRSLPRNTPGELCVRSQCVMQGYYKQEDETAQTIDKNGWLHTGDIGF 425

Query: 426 IDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACV 485
           IDD+ ++FIVDRIKELIKYKGFQVAPAELEAILL+H SVEDAAVV LPDEE GEIPAA V
Sbjct: 426 IDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEETGEIPAASV 485

Query: 486 VMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR 543
           +++P AKESE+DIM++VASN A YKKVRV+HFVD IPKS SGKIMRR++K+KM+EKM+
Sbjct: 486 ILSPGAKESEEDIMNYVASNAAHYKKVRVVHFVDAIPKSPSGKIMRRLVKEKMVEKMK 543

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569625|ref|XP_003552999.1| PREDICTED: 4-coumarate--CoA ligase-like 1-like [Glycine max]

 Score =  798 bits (2061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/538 (73%), Positives = 467/538 (86%), Gaps = 13/538 (2%)

Query: 16  AHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRG 75
           A +EEH+FRS+H  VPVP+NVTLP+FVLQ+AELYADKVAFV+AV+GK  T+++V      
Sbjct: 9   ASEEEHVFRSQHSPVPVPDNVTLPEFVLQNAELYADKVAFVDAVTGKGVTFSEVVTGVHR 68

Query: 76  FAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAAD 135
           F+KALR+LGLRKG VVIVVLPNV EY IVALGIMAAGGVFSGANPT+H SE+KKQ ++AD
Sbjct: 69  FSKALRTLGLRKGHVVIVVLPNVVEYAIVALGIMAAGGVFSGANPTSHVSEIKKQAESAD 128

Query: 136 AKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDL 195
           AKLIV+    YEKVK L LPII+LG+E +E A+NW++L+EAAD+AG++ + +  ++Q DL
Sbjct: 129 AKLIVTNVTNYEKVKALELPIILLGDEVVEGAMNWNKLLEAADRAGDDLTKEP-IQQNDL 187

Query: 196 W----------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGIC 245
                      +SKGVMLTHRNLVANLCSTLF V  EM G VTTLGLIPFFHIYGITGIC
Sbjct: 188 CAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFGVTKEMEGLVTTLGLIPFFHIYGITGIC 247

Query: 246 CATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLR 305
           CATL++KGKVV+M RFEL+ FL+ALITHEVTFAPIVPPIIL+LVK+PIVDEFDLSKL+L+
Sbjct: 248 CATLKSKGKVVVMGRFELKTFLNALITHEVTFAPIVPPIILTLVKNPIVDEFDLSKLKLQ 307

Query: 306 AVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFI 365
           A+MTAAAPLAP+LL++FE KFPGV VQEAYGLTEHSCITLTY      S  + +NSVGFI
Sbjct: 308 AIMTAAAPLAPELLNAFEHKFPGVAVQEAYGLTEHSCITLTYAQKGLGS--THRNSVGFI 365

Query: 366 LPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGY 425
           LPNLEVKF++P+TG+SLP NTPGELCVRSQCVMQGYY  E+ETA+TIDKNGWLHTGDIG+
Sbjct: 366 LPNLEVKFVDPDTGRSLPRNTPGELCVRSQCVMQGYYKQEDETAQTIDKNGWLHTGDIGF 425

Query: 426 IDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACV 485
           IDD+ ++FI+DRIKELIKYKGFQVAPAELEAILL+H SVEDAAVV LPDEEAGEIPAA V
Sbjct: 426 IDDEENVFIIDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEEAGEIPAASV 485

Query: 486 VMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR 543
           V++P  KESE+DIM++VASN A YKKVRV+HFV+ IPKS SGKIMRR++K++M+EKM+
Sbjct: 486 VLSPGEKESEEDIMNYVASNAAHYKKVRVVHFVEAIPKSPSGKIMRRLVKERMVEKMK 543

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221636|ref|NP_176482.1| 4-coumarate--CoA ligase-like 1 [Arabidopsis thaliana] gi|75311450|sp|Q9LQ12.1|4CLL1_ARATH RecName: Full=4-coumarate--CoA ligase-like 1; AltName: Full=4-coumarate--CoA ligase isoform 10; Short=At4CL10 gi|8493582|gb|AAF75805.1|AC011000_8 Strong similarity to 4-coumarate:CoA ligase 2 gene from Arabidopsis thaliana gb|AF106085, and contains AMP-binding PF|00501 and Thioredoxin PF|00085 domains. EST gb|AA728438 comes from this gene [Arabidopsis thaliana] gi|29888156|gb|AAP03019.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana] gi|36312893|gb|AAQ86593.1| 4-coumarate CoA ligase isoform 10 [Arabidopsis thaliana] gi|332195904|gb|AEE34025.1| 4-coumarate--CoA ligase-like 1 [Arabidopsis thaliana]

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/538 (72%), Positives = 462/538 (85%), Gaps = 12/538 (2%)

Query: 17  HDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGF 76
            D E+IFRS +P+VP+P+ +TLP+FVLQ  E Y + VAFVEAV+GKA TY  V RDT+  
Sbjct: 7   EDNEYIFRSLYPSVPIPDKLTLPEFVLQGVEEYTENVAFVEAVTGKAVTYGDVVRDTKRL 66

Query: 77  AKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADA 136
           AKAL SLGLRKGQV++VVLPNVAEYGI+ALGIM+AGGVFSGANPTA  SE+KKQV+A+ A
Sbjct: 67  AKALTSLGLRKGQVMVVVLPNVAEYGIIALGIMSAGGVFSGANPTALVSEIKKQVEASGA 126

Query: 137 KLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLW 196
           + I++ A  YEKVK LGLP+IVLGEE+IE A+NW +L+EA DK G+  ++++++ QTDL 
Sbjct: 127 RGIITDATNYEKVKSLGLPVIVLGEEKIEGAVNWKDLLEAGDKCGD--TDNEEILQTDLC 184

Query: 197 ----------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICC 246
                     + KGVMLTHRNL+ANLCSTLF V  EMIGQ+ TLGLIPFFHIYGI GICC
Sbjct: 185 ALPFSSGTTGLQKGVMLTHRNLIANLCSTLFGVRSEMIGQIVTLGLIPFFHIYGIVGICC 244

Query: 247 ATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRA 306
           AT++NKGKVV M+R++LR FL+ALI HEV+FAPIVPPIIL+LVK+PIVDEFDLSKL+L++
Sbjct: 245 ATMKNKGKVVAMSRYDLRIFLNALIAHEVSFAPIVPPIILNLVKNPIVDEFDLSKLKLQS 304

Query: 307 VMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFIL 366
           VMTAAAPLAP+LL++FE KFP VQVQEAYGLTEHSCITLT+GDP      +K+NSVGFIL
Sbjct: 305 VMTAAAPLAPELLTAFEAKFPNVQVQEAYGLTEHSCITLTHGDPEKGQGIAKRNSVGFIL 364

Query: 367 PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYI 426
           PNLEVKFI+P+TG+SLP NT GELCVRSQCVMQGY+ N+EET +TID+ GWLHTGDIGYI
Sbjct: 365 PNLEVKFIDPDTGRSLPKNTSGELCVRSQCVMQGYFMNKEETDKTIDEQGWLHTGDIGYI 424

Query: 427 DDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV 486
           DDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVED AVV LPDEEAGEIPAACVV
Sbjct: 425 DDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDVAVVPLPDEEAGEIPAACVV 484

Query: 487 MNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK 544
           +NP A E E+DI++FVA+NVA YKKVR +HFVD IPKS SGKIMRR+L+DK+L   +K
Sbjct: 485 INPKATEKEEDILNFVAANVAHYKKVRAVHFVDSIPKSLSGKIMRRLLRDKILSINKK 542

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28628063|gb|AAO25511.1| 4-coumarate:CoA ligase-like [Nicotiana sylvestris] gi|28628067|gb|AAO25512.1| 4-coumarate:CoA ligase-like [Nicotiana sylvestris]

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/539 (73%), Positives = 465/539 (86%), Gaps = 19/539 (3%)

Query: 20  EHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKA 79
           EHIFRSR+P V VP+NVTLPDFVL + ELY DK+AFV+A +GK YTY QVARD R FAKA
Sbjct: 15  EHIFRSRYPPVQVPDNVTLPDFVLHNVELYTDKMAFVDATTGKGYTYGQVARDIRRFAKA 74

Query: 80  LRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLI 139
           LRSLGLRKG+VV+VVLPNV EY IVALGIMAAGGVFSGANP AH+SE+ KQV++AD KLI
Sbjct: 75  LRSLGLRKGRVVVVVLPNVPEYAIVALGIMAAGGVFSGANPAAHSSEIVKQVESADGKLI 134

Query: 140 VSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAG---NNFSNDDD--VKQTD 194
           VS  P Y KVK  GLP+I+LGEE +E  I+W EL+EAA++AG   ++ +N +D  V+Q D
Sbjct: 135 VSDLPTYHKVKDCGLPVIILGEEHVEGTIHWDELLEAAERAGSRTDHITNHEDEMVQQND 194

Query: 195 LW----------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGI 244
           L           +SKGVMLTHRNLVANLCSTLFSV PEM+GQVTTLGLIPFFHIYGITGI
Sbjct: 195 LCALPFSSGTTGLSKGVMLTHRNLVANLCSTLFSVSPEMVGQVTTLGLIPFFHIYGITGI 254

Query: 245 CCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQL 304
           CCAT+RNKGKVV++ R+ELRAFL+ALITHEVTFAPIVPPIIL+LVK+PIVDEFDLSKL+L
Sbjct: 255 CCATIRNKGKVVVLRRYELRAFLNALITHEVTFAPIVPPIILALVKNPIVDEFDLSKLKL 314

Query: 305 RAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGF 364
           R++MTAAAPLAP++L+ FEKKFP VQVQEAYG+TEHSCITL++ D       +K+NSVGF
Sbjct: 315 RSIMTAAAPLAPEILNEFEKKFPDVQVQEAYGMTEHSCITLSHSDQHT----AKRNSVGF 370

Query: 365 ILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIG 424
           ILPNLEVKF++P+TG+SLP N PGE+CV+SQCVM+GYY NE ET  TIDK+GWL TGDIG
Sbjct: 371 ILPNLEVKFVDPDTGRSLPKNKPGEICVKSQCVMKGYYKNEFETCLTIDKDGWLQTGDIG 430

Query: 425 YIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAAC 484
           YIDDDGDIF+VDRIKELIKYKGFQVAPAELE ILLTHPSVEDAAVV LPDEEAGEIP A 
Sbjct: 431 YIDDDGDIFLVDRIKELIKYKGFQVAPAELEGILLTHPSVEDAAVVGLPDEEAGEIPVAW 490

Query: 485 VVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR 543
           VV+N  AKESE+DI++++AS VA YK+VRV+ FVD IPKS SGKI+RR++KDKMLE+++
Sbjct: 491 VVLNSKAKESEEDIINYIASTVAQYKRVRVVQFVDSIPKSPSGKILRRLIKDKMLERLK 549

Source: Nicotiana sylvestris

Species: Nicotiana sylvestris

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147807239|emb|CAN77428.1| hypothetical protein VITISV_001737 [Vitis vinifera]

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/540 (73%), Positives = 455/540 (84%), Gaps = 39/540 (7%)

Query: 14  AAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDT 73
           A+A D EHIFRS+H AVPVP+N+TLPDFVLQDAELYA+KVAFVEAV+GK YTY +V RD 
Sbjct: 7   ASAQDNEHIFRSQHQAVPVPDNMTLPDFVLQDAELYAEKVAFVEAVTGKEYTYGEVVRDV 66

Query: 74  RGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDA 133
           R FAKALRS+GLRKG+VV+VVLPNVAEY IVALGIMAAGGVFSGANP  HASE+KKQV+A
Sbjct: 67  RRFAKALRSIGLRKGRVVVVVLPNVAEYAIVALGIMAAGGVFSGANPAGHASEIKKQVEA 126

Query: 134 ADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQT 193
           ADAKL+V+   +YEKVK L LP+IV+GEE +  AINW EL+EAAD+A N  +  +DV Q 
Sbjct: 127 ADAKLVVTNGAMYEKVKSLELPVIVMGEEXVAGAINWGELLEAADRA-NTDTISEDVHQN 185

Query: 194 DLW----------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITG 243
           DL           ISKGVMLTHRNLVANLCSTLFSV PEM+GQ+T LGL+PFFHIYGITG
Sbjct: 186 DLCALPFSSGTTGISKGVMLTHRNLVANLCSTLFSVGPEMVGQITILGLMPFFHIYGITG 245

Query: 244 ICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQ 303
           ICCATLRNKGKVV++ R+ELR FL+ALITHE+TFAPIVPPIIL+LVK+PIV+EFDLS+L+
Sbjct: 246 ICCATLRNKGKVVVIGRYELRTFLNALITHEITFAPIVPPIILALVKNPIVEEFDLSRLK 305

Query: 304 LRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVG 363
           LRAVMTAAAPLAP+LLS+FEKKFP VQVQEAYGLTEHSCITLT+GDP    A +KKNSVG
Sbjct: 306 LRAVMTAAAPLAPELLSAFEKKFPSVQVQEAYGLTEHSCITLTHGDPTKGHATAKKNSVG 365

Query: 364 FILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDI 423
           FILPN+E+KFI+PETG SLP NTPGE+CVRSQCVMQGYY NEEETARTID NGWLHTGDI
Sbjct: 366 FILPNMELKFIDPETGISLPKNTPGEICVRSQCVMQGYYKNEEETARTIDNNGWLHTGDI 425

Query: 424 GYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAA 483
           GYIDDDGD+F+VDRIKELIK                            LPDEEAGEIPAA
Sbjct: 426 GYIDDDGDVFVVDRIKELIK----------------------------LPDEEAGEIPAA 457

Query: 484 CVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR 543
           CVV+NP AKE+E++I+ +VASNVA YK+VRV+HFV+ IPKS SGKIMRR+L++KMLEKM+
Sbjct: 458 CVVLNPEAKETEEEIVKYVASNVAQYKRVRVVHFVETIPKSPSGKIMRRLLREKMLEKMK 517

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	544
TAIR|locus:2015499	542	ACOS5 "acyl-CoA synthetase 5"	0.965	0.968	0.679	1.4e-192
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.944	0.924	0.351	4.9e-85
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	0.941	0.912	0.349	5.8e-82
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	0.952	0.952	0.341	7.4e-82
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	0.930	0.926	0.330	4.8e-78
TAIR|locus:2094771	570	4CL5 "4-coumarate:CoA ligase 5	0.908	0.866	0.332	5.5e-77
DICTYBASE|DDB_G0284831	551	4cl1 "4-coumarate-CoA ligase"	0.604	0.597	0.380	3.3e-71
DICTYBASE|DDB_G0284745	551	4cl2 "4-coumarate-CoA ligase"	0.604	0.597	0.388	3.3e-71
TAIR|locus:2034423	565	AT1G20480 [Arabidopsis thalian	0.939	0.904	0.324	2.6e-70
UNIPROTKB|Q5LVA1	535	fadD "4-coumarate:CoA ligase"	0.875	0.889	0.356	8e-69

TAIR|locus:2015499 ACOS5 "acyl-CoA synthetase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1866 (661.9 bits), Expect = 1.4e-192, P = 1.4e-192
 Identities = 365/537 (67%), Positives = 434/537 (80%)

Query:    18 DEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFA 77
             D E+IFRS +P+VP+P+ +TLP+FVLQ  E Y + VAFVEAV+GKA TY  V RDT+  A
Sbjct:     8 DNEYIFRSLYPSVPIPDKLTLPEFVLQGVEEYTENVAFVEAVTGKAVTYGDVVRDTKRLA 67

Query:    78 KALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAK 137
             KAL SLGLRKGQV++VVLPNVAEYGI+ALGIM+AGGVFSGANPTA  SE+KKQV+A+ A+
Sbjct:    68 KALTSLGLRKGQVMVVVLPNVAEYGIIALGIMSAGGVFSGANPTALVSEIKKQVEASGAR 127

Query:   138 LIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLW- 196
              I++ A  YEKVK LGLP+IVLGEE+IE A+NW +L+EA DK G+  ++++++ QTDL  
Sbjct:   128 GIITDATNYEKVKSLGLPVIVLGEEKIEGAVNWKDLLEAGDKCGD--TDNEEILQTDLCA 185

Query:   197 ---------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCA 247
                      + KGVMLTHRNL+ANLCSTLF V  EMIGQ+ TLGLIPFFHIYGI GICCA
Sbjct:   186 LPFSSGTTGLQKGVMLTHRNLIANLCSTLFGVRSEMIGQIVTLGLIPFFHIYGIVGICCA 245

Query:   248 TLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAV 307
             T++NKGKVV M+R++LR FL+ALI HEV+FAPIVPPIIL+LVK+PIVDEFDLSKL+L++V
Sbjct:   246 TMKNKGKVVAMSRYDLRIFLNALIAHEVSFAPIVPPIILNLVKNPIVDEFDLSKLKLQSV 305

Query:   308 MTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILP 367
             MT          ++FE KFP VQVQEAYGLTEHSCITLT+GDP      +K+NSVGFILP
Sbjct:   306 MTAAAPLAPELLTAFEAKFPNVQVQEAYGLTEHSCITLTHGDPEKGQGIAKRNSVGFILP 365

Query:   368 NLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXX 427
             NLEVKFI+P+TG+SLP NT GELCVRSQCVMQGY+ N+EET +TID+ GWLHT       
Sbjct:   366 NLEVKFIDPDTGRSLPKNTSGELCVRSQCVMQGYFMNKEETDKTIDEQGWLHTGDIGYID 425

Query:   428 XXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVM 487
                        KELIKYKGFQVAPAELEAILLTHPSVED AVV LPDEEAGEIPAACVV+
Sbjct:   426 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDVAVVPLPDEEAGEIPAACVVI 485

Query:   488 NPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK 544
             NP A E E+DI++FVA+NVA YKKVR +HFVD IPKS SGKIMRR+L+DK+L   +K
Sbjct:   486 NPKATEKEEDILNFVAANVAHYKKVRAVHFVDSIPKSLSGKIMRRLLRDKILSINKK 542

GO:0003824 "catalytic activity" evidence=IEA

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS;IDA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031956 "medium-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IDA

GO:0080110 "sporopollenin biosynthetic process" evidence=IMP;TAS

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 187/532 (35%), Positives = 297/532 (55%)

Query:    22 IFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALR 81
             IFRSR P + +P ++ L D++ ++   +A K   +   +G+ YTYA V   +R  A  L 
Sbjct:    22 IFRSRLPDIYIPNHLPLHDYIFENISEFAAKPCLINGPTGEVYTYADVHVTSRKLAAGLH 81

Query:    82 SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVS 141
             +LG+++  VV+++LPN  E  +  L     G + + ANP    +E+ KQ  A+ AKLIV+
Sbjct:    82 NLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANPFFTPAEISKQAKASAAKLIVT 141

Query:   142 YAPIYEKVKGL---GLPIIVLGEERI-ESAINWSELIEA----ADKAGNNFSNDDDV--- 190
              +   +K+K L   G+ I+    + I E+ + +SEL ++     D      S +D V   
Sbjct:   142 QSRYVDKIKNLQNDGVLIVTTDSDAIPENCLRFSELTQSEEPRVDSIPEKISPEDVVALP 201

Query:   191 -KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMI--GQVTTLGLIPFFHIYGITGICCA 247
                    + KGVMLTH+ LV ++   +    P +        L ++P FHIY +  I   
Sbjct:   202 FSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFNRDDVILCVLPMFHIYALNSIMLC 261

Query:   248 TLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAV 307
             +LR    +++M +FE+   L+ +   +VT A +VPPI+L++ K P  +++DLS +  R V
Sbjct:   262 SLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIVLAIAKSPETEKYDLSSV--RMV 319

Query:   308 MTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHS-CITLTYGDPANPSAGSKKNSVGFIL 366
              +           +   KFP  ++ + YG+TE    + ++ G    P    K  + G ++
Sbjct:   320 KSGAAPLGKELEDAISAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFP-VKSGACGTVV 378

Query:   367 PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXX 426
              N E+K ++P+TG SLP N PGE+C+R   +M+GY N+   TA TIDK+GWLHT      
Sbjct:   379 RNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPLATASTIDKDGWLHTGDVGFI 438

Query:   427 XXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV 486
                         KELIKYKGFQVAPAELE++L+ HP + D AVV++ +E+AGE+P A VV
Sbjct:   439 DDDDELFIVDRLKELIKYKGFQVAPAELESLLIGHPEINDVAVVAMKEEDAGEVPVAFVV 498

Query:   487 MNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
              + ++  SED+I  FV+  V  YK++  + F D IPK+ SGKI+R+ L+ ++
Sbjct:   499 RSKDSNISEDEIKQFVSKQVVFYKRINKVFFTDSIPKAPSGKILRKDLRARL 550

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 186/532 (34%), Positives = 294/532 (55%)

Query:    22 IFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALR 81
             IFRS+ P + +P ++ L  +  +     +DK   +   +GK+YTY +     R  A  L 
Sbjct:    34 IFRSKLPDIDIPNHLPLHTYCFEKLSSVSDKPCLIVGSTGKSYTYGETHLICRRVASGLY 93

Query:    82 SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVS 141
              LG+RKG V++++L N AE+    +G    G V + ANP   + EL KQ+ ++ AKLI++
Sbjct:    94 KLGIRKGDVIMILLQNSAEFVFSFMGASMIGAVSTTANPFYTSQELYKQLKSSGAKLIIT 153

Query:   142 YAPIYEKVKGLG--LPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDL---- 195
             ++   +K+K LG  L +I   E   E+ + +S LI   D   N F    D+   D     
Sbjct:   154 HSQYVDKLKNLGENLTLITTDEPTPENCLPFSTLI--TDDETNPFQETVDIGGDDAAALP 211

Query:   196 ------WISKGVMLTHRNLVANLCSTLFSVVPEMI--GQVTTLGLIPFFHIYGITGICCA 247
                    + KGV+LTH++L+ ++   +    P +        L ++P FHIY +  +   
Sbjct:   212 FSSGTTGLPKGVVLTHKSLITSVAQQVDGDNPNLYLKSNDVILCVLPLFHIYSLNSVLLN 271

Query:   248 TLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAV 307
             +LR+   V++M++FE+ A LD +  H VT A +VPP++++L K+P V+ +DLS +  R V
Sbjct:   272 SLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIALAKNPTVNSYDLSSV--RFV 329

Query:   308 MTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHS-CITLTYGDPANPSAGSKKNSVGFIL 366
             ++           S  ++ P   + + YG+TE    ++++ G    P   +K  S G ++
Sbjct:   330 LSGAAPLGKELQDSLRRRLPQAILGQGYGMTEAGPVLSMSLGFAKEPIP-TKSGSCGTVV 388

Query:   367 PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXX 426
              N E+K ++ ET  SL  N PGE+C+R Q +M+ Y N+ E T+ TID+ GWLHT      
Sbjct:   389 RNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEYLNDPEATSATIDEEGWLHTGDIGYV 448

Query:   427 XXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV 486
                         KE+IK+KGFQV PAELE++L+ H S+ DAAVV   DE AGE+P A VV
Sbjct:   449 DEDDEIFIVDRLKEVIKFKGFQVPPAELESLLINHHSIADAAVVPQNDEVAGEVPVAFVV 508

Query:   487 MNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
              +     +E+D+ ++VA  V  YK++  + FV  IPKS SGKI+R+ LK K+
Sbjct:   509 RSNGNDITEEDVKEYVAKQVVFYKRLHKVFFVASIPKSPSGKILRKDLKAKL 560

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
 Identities = 188/551 (34%), Positives = 303/551 (54%)

Query:    15 AAHDEEHIFRSRHPAVPVPE--NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARD 72
             + +  + I+RS  P + +P+  N +L  F+ +++  Y  K+A  ++ +G + T++Q+   
Sbjct:     4 SGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQLKSA 63

Query:    73 TRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVD 132
                 A     LG+RK  VV++  PN  ++ +  L + A GGVF+ ANP    +E+ KQ+ 
Sbjct:    64 VARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSKQIK 123

Query:   133 AADAKLIVSYAPIYEKVKGLGLPIIVLG-EERIE-------SAINWSELIEAADKAGNN- 183
              ++ K+I+S   +++K+KG  LP+++LG ++ +E         +++  ++E ++      
Sbjct:   124 DSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPPGSNSKILSFDNVMELSEPVSEYP 183

Query:   184 FSNDDDVKQTD----LW------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQV--TTLG 231
             F    ++KQ+D    L+       SKGV LTH N +A   S + ++  +++G+     L 
Sbjct:   184 FV---EIKQSDTAALLYSSGTTGTSKGVELTHGNFIA--ASLMVTMDQDLMGEYHGVFLC 238

Query:   232 LIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKD 291
              +P FH++G+  I  + L+    +V M RFEL   L  +    VT   +VPP+ L+L K 
Sbjct:   239 FLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQ 298

Query:   292 PIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPA 351
              IV +FDLS L+   + +              +  P V + + YG+TE +C  ++  DP 
Sbjct:   299 SIVKKFDLSSLKY--IGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTE-TCGIVSVEDPR 355

Query:   352 NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETART 411
                  S   S G + P +E + ++ ETGKS P N  GE+ VR   +M+GY NN + T  T
Sbjct:   356 LGKRNS--GSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKGYLNNPQATKET 413

Query:   412 IDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS 471
             IDK  W+HT                  KELIKYKGFQVAPAELE +L++HP + DA V+ 
Sbjct:   414 IDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPDILDAVVIP 473

Query:   472 LPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMR 531
              PDEEAGE+P A VV +PN+  +E DI  F+A  VA YK++R + F+  +PKS +GKI+R
Sbjct:   474 FPDEEAGEVPIAFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVSFISLVPKSAAGKILR 533

Query:   532 RILKDKMLEKM 542
             R L  ++  KM
Sbjct:   534 RELVQQVRSKM 544

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 174/526 (33%), Positives = 289/526 (54%)

Query:    23 FRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRS 82
             F S+   +P+P N +L       ++ +  ++AF++A +G+  T+ ++ R     A  L  
Sbjct:    17 FYSKRTPIPLPPNPSLDVTTFISSQAHRGRIAFIDASTGQNLTFTELWRAVESVADCLSE 76

Query:    83 LGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSY 142
             +G+RKG VV+++ PN   + +V L +M+ G + +  NP   ++E+ KQ+  ++  L  + 
Sbjct:    77 IGIRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNTSNEIAKQIKDSNPVLAFTT 136

Query:   143 APIYEKVKGLG--LPIIVLGEERIESAINWSELIEAADK--AGNNFSN--DDDVKQTDLW 196
             + +  K+      LPI+++ EER++S  +   L+E   K  +GN      D D   T L+
Sbjct:   137 SQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLVEMMKKEPSGNRVKERVDQDDTATLLY 196

Query:   197 ------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLR 250
                   +SKGV+ +HRNL+A +  T+ +      G+   +  +P FHIYG+       L 
Sbjct:   197 SSGTTGMSKGVISSHRNLIA-MVQTIVNRFGSDDGEQRFICTVPMFHIYGLAAFATGLLA 255

Query:   251 NKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVK--DPIVDEFDLSKLQLRAVM 308
                 ++++++FE+   + A+  ++ T  P+VPPI++++V   D I  ++DLS +    V+
Sbjct:   256 YGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAMVNGADQIKAKYDLSSMH--TVL 313

Query:   309 TXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPN 368
                          F +K+P V++ + YGLTE + I  +  D    S   +  + G +  +
Sbjct:   314 CGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGAST-DTVEESR--RYGTAGKLSAS 370

Query:   369 LEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXX 428
             +E + ++P TG+ L     GEL ++   +M+GY++NEE T+ T+D  GWL T        
Sbjct:   371 MEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSSTLDSEGWLRTGDLCYIDE 430

Query:   429 XXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMN 488
                       KELIKYKG+QVAPAELEA+LLTHP + DAAV+  PD+E G+ P A VV  
Sbjct:   431 DGFIFVVDRLKELIKYKGYQVAPAELEALLLTHPEITDAAVIPFPDKEVGQFPMAYVVRK 490

Query:   489 PNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
               +  SE  IM+FVA  VA YK++R + FV  IPK+ SGKI+R+ L
Sbjct:   491 TGSSLSEKTIMEFVAKQVAPYKRIRKVAFVSSIPKNPSGKILRKDL 536

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2094771 4CL5 "4-coumarate:CoA ligase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 172/517 (33%), Positives = 284/517 (54%)

Query:    45 DAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIV 104
             D +  +     ++  +G+  TYA V  + R  A  +  LG+R G VV+++LPN  E+ + 
Sbjct:    55 DGDGDSSTTCIIDGATGRILTYADVQTNMRRIAAGIHRLGIRHGDVVMLLLPNSPEFALS 114

Query:   105 ALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL---GLPIIVL-- 159
              L +   G V + ANP     E+ KQ  A+ AK+I++   + +K+  L   G+ I+ L  
Sbjct:   115 FLAVAYLGAVSTTANPFYTQPEIAKQAKASAAKMIITKKCLVDKLTNLKNDGVLIVCLDD 174

Query:   160 -GEERIESA-----INWSELIEA--ADKAGNNFSNDDDVKQT----DLWISKGVMLTHRN 207
              G+  + S+     ++++EL +A   +      S +D V          + KGVM+TH+ 
Sbjct:   175 DGDNGVVSSSDDGCVSFTELTQADETELLKPKISPEDTVAMPYSSGTTGLPKGVMITHKG 234

Query:   208 LVANLCSTLFSVVPEM--IGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRA 265
             LV ++   +    P +        L  +P FHIY +  +  + +R    ++++ RFEL  
Sbjct:   235 LVTSIAQKVDGENPNLNFTANDVILCFLPMFHIYALDALMLSAMRTGAALLIVPRFELNL 294

Query:   266 FLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKK 325
              ++ +  ++VT  P+ PP++L+ +K P  + +DLS +  R +++           +   K
Sbjct:   295 VMELIQRYKVTVVPVAPPVVLAFIKSPETERYDLSSV--RIMLSGAATLKKELEDAVRLK 352

Query:   326 FPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSN 385
             FP     + YG+TE   +  +     NP   +K  + G ++ N E+K ++ ETG SLP N
Sbjct:   353 FPNAIFGQGYGMTESGTVAKSLAFAKNPFK-TKSGACGTVIRNAEMKVVDTETGISLPRN 411

Query:   386 TPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYK 445
               GE+CVR   +M+GY N+ E TARTIDK+GWLHT                  KELIK+K
Sbjct:   412 KSGEICVRGHQLMKGYLNDPEATARTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKFK 471

Query:   446 GFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASN 505
             G+QVAPAELEA+L++HPS++DAAVV++ DE A E+P A V  +  ++ +EDD+  +V   
Sbjct:   472 GYQVAPAELEALLISHPSIDDAAVVAMKDEVADEVPVAFVARSQGSQLTEDDVKSYVNKQ 531

Query:   506 VATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 542
             V  YK+++++ F++ IPK+ SGKI+R+ L+ K LE M
Sbjct:   532 VVHYKRIKMVFFIEVIPKAVSGKILRKDLRAK-LETM 567

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009699 "phenylpropanoid biosynthetic process" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

DICTYBASE|DDB_G0284831 4cl1 "4-coumarate-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 578 (208.5 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
 Identities = 130/342 (38%), Positives = 188/342 (54%)

Query:   199 KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM 258
             KGV L+H N+V+N   T            T +G++PFFHIYG+       ++   +VV++
Sbjct:   213 KGVCLSHHNIVSNTYQTQTIETSTYKKNDTVMGILPFFHIYGLMLFLMLMVKQGHRVVVL 272

Query:   259 NRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXX 318
              +FE   FL+ +  ++V  + IVPP+ +   K PIVD+FDLS L  R + +         
Sbjct:   273 PKFEPVRFLELIQKYKVAISFIVPPVAIMFAKSPIVDKFDLSSL--RTLFSGAAPLSSEV 330

Query:   319 XSSFEKKFPG-VQVQEAYGLTEHS--CITLTYGDPANPSAGSKKNSVGFILPNLEVKFIN 375
                 +++F G + +++ YG TE S  C  +       PS   K  S G +LPN   K I+
Sbjct:   331 EDLIKERFKGRLVIKQGYGATELSPACFVI-------PSGLVKSGSAGILLPNQLAKIIS 383

Query:   376 PETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXX 435
             PETG++L     GE+C++   VM GYYNNE+ T   IDK+G+L T               
Sbjct:   384 PETGENLGMGEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFLKTGDIGYVDEDGYYFIV 443

Query:   436 XXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE 495
                KELIK KGFQV PAELEA+LL+HP V DA VV L   + GE+P   VV+  N   +E
Sbjct:   444 DRSKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQNESLTE 503

Query:   496 DDIMDFVASNVATYKKVRV-LHFVDGIPKSHSGKIMRRILKD 536
              +++D+    +A YK  R  + F+  IPKS +GK++R+ LKD
Sbjct:   504 KELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNLKD 545

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

DICTYBASE|DDB_G0284745 4cl2 "4-coumarate-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 578 (208.5 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
 Identities = 133/342 (38%), Positives = 186/342 (54%)

Query:   199 KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM 258
             KGV L+H NLV+N   T            T +G +PFFHIYG+       ++    VV++
Sbjct:   213 KGVCLSHHNLVSNTHQTQTVETTNYKKNDTVMGQLPFFHIYGLMTYLILMVKQGHCVVIL 272

Query:   259 NRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXX 318
              +FE   FLD +  ++V  + IVPPI +   K PIVD+FDLS L  R + +         
Sbjct:   273 PKFEFVRFLDLIQKYKVAISFIVPPIAIMFAKSPIVDKFDLSSL--RTLFSGAAPLSREV 330

Query:   319 XSSFEKKFPG-VQVQEAYGLTEHS--CITLTYGDPANPSAGSKKNSVGFILPNLEVKFIN 375
                 +++F G + +++ YG TE S  C  +       PS   K  S G +LPN  VK I+
Sbjct:   331 EDLIKERFKGKLIIKQGYGATELSPACFVI-------PSGLIKSGSAGILLPNQLVKIIS 383

Query:   376 PETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXX 435
             PETG++L     GE+C++   VM GYYNNE+ T   IDK+G+  T               
Sbjct:   384 PETGENLGMGEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFFKTGDIGYVDEDGYYFIV 443

Query:   436 XXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE 495
                KELIK KGFQV PAELEA+LL+HP V DA VV L   + GE+P   VV+  N   +E
Sbjct:   444 DRSKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQNESLTE 503

Query:   496 DDIMDFVASNVATYKKVRV-LHFVDGIPKSHSGKIMRRILKD 536
              +++D+    +A YK  R  + F+  IPKS +GK++R+ LKD
Sbjct:   504 KELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNLKD 545

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 176/543 (32%), Positives = 277/543 (51%)

Query:    22 IFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALR 81
             IF S+   + +P N  L       ++ +  K  FV+AV+G+  ++ ++       A  L 
Sbjct:    33 IFYSKREPMALPPNQFLDVTSFIASQPHRGKTVFVDAVTGRRLSFPELWLGVERVAGCLY 92

Query:    82 SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVS 141
             +LG+RKG VVI++ PN   + IV+L +M+ G + + ANP   + E+ KQ+  +   L  +
Sbjct:    93 ALGVRKGNVVIILSPNSILFPIVSLSVMSLGAIITTANPINTSDEISKQIGDSRPVLAFT 152

Query:   142 YAPIYEKV---KGLGLPIIVLGE---------ERIESAINWSELIEA--ADKAGNNFSND 187
                +  K+       LP++++ +         +R++       +IE   ++       N 
Sbjct:   153 TCKLVSKLAAASNFNLPVVLMDDYHVPSQSYGDRVKLVGRLETMIETEPSESRVKQRVNQ 212

Query:   188 DDV-----KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIG-QVTTLGLIPFFHIYGI 241
             DD             SKGVML+HRNL+A     L        G +  T+  IP  HI+G 
Sbjct:   213 DDTAALLYSSGTTGTSKGVMLSHRNLIA-----LVQAYRARFGLEQRTICTIPMCHIFGF 267

Query:   242 TGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVK--DPIVDEFDL 299
              G     +     +V++ +F++   L A+ TH  ++  +VPPI++++V   + I  ++DL
Sbjct:   268 GGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLSLVPPIVVAMVNGANEINSKYDL 327

Query:   300 SKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKK 359
             S L    V+             F + +P V++ + YGLTE + I  +     N     + 
Sbjct:   328 SSLH--TVVAGGAPLSREVTEKFVENYPKVKILQGYGLTESTAIAASM---FNKEETKRY 382

Query:   360 NSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLH 419
              + G + PN+E K ++P+TG+ L  N  GEL +RS  VM+GY+ N+E TA TID  GWL 
Sbjct:   383 GASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPTVMKGYFKNKEATASTIDSEGWLK 442

Query:   420 TXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGE 479
             T                  KELIK  G+QVAPAELEA+LL HP + DAAV+ +PD +AG+
Sbjct:   443 TGDLCYIDGDGFVFVVDRLKELIKCNGYQVAPAELEALLLAHPEIADAAVIPIPDMKAGQ 502

Query:   480 IPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML 539
              P A +V    +  SE +IM FVA  V+ YKK+R + F+  IPK+ SGKI+RR L     
Sbjct:   503 YPMAYIVRKVGSNLSESEIMGFVAKQVSPYKKIRKVTFLASIPKNPSGKILRRELTKLTT 562

Query:   540 EKM 542
              K+
Sbjct:   563 SKL 565

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

UNIPROTKB|Q5LVA1 fadD "4-coumarate:CoA ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 177/496 (35%), Positives = 260/496 (52%)

Query:    51 DKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA 110
             D    ++  SG++Y+ AQ  R  +  A  L +  +  G  V +++PN+ EY I   GI  
Sbjct:    44 DMTILIDGPSGRSYSGAQFIRAVKSLAGGLSAHDMGAGTCVGLMMPNLPEYCIAFHGIAW 103

Query:   111 AGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEK----VKGLGLPIIVLGEERIES 166
             AGG  +  NPT  A E+  Q++ A A+++V+     +     ++G G+  IV+  +  E 
Sbjct:   104 AGGTITTINPTYTAPEVHHQLNDAGAQVLVTIPAFLDTARAAIEGTGVDRIVVVGDAPEG 163

Query:   167 AINWSELI--EAADKAGNNFSNDDDV---KQTDLWISKGVMLTHRNLVANLCSTLFSVVP 221
              +  S+L+      +A  + +    V         + KGVMLTHRNLV N+  TL     
Sbjct:   164 TLALSDLMGPPLEHQAPVDVAEHVVVLPYSSGTTGMPKGVMLTHRNLVVNIDQTLLPADL 223

Query:   222 EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIV 281
                G++TT   +PFFHIYG+  +    L   G +V + RF+L  +LD +I +      IV
Sbjct:   224 NP-GEMTT-AFLPFFHIYGLQVLMNIYLTAGGGLVTLPRFDLEQYLDCVIRYRTPRLWIV 281

Query:   282 PPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHS 341
             PP+ L+L K P+V  +DLS ++   V                ++    +V + YG+TE S
Sbjct:   282 PPVALALAKHPVVANYDLSCVE--QVFCAAAPLGRDVAEGLGERI-NARVNQGYGMTELS 338

Query:   342 CITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGY 401
              ++       +P    K  + G  + N E + I+PETG  LP    GEL VR   VM+GY
Sbjct:   339 PVS-----HVSPHGEGKPGASGVAISNTECRIIDPETGTDLPLGEDGELWVRGPQVMKGY 393

Query:   402 YNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTH 461
              NNE  T  TI + GWL T                  KELIKYKGFQVAPAE+EA LLTH
Sbjct:   394 LNNEAATRATIVEGGWLRTGDIAHFDEDGFLYITDRLKELIKYKGFQVAPAEVEAALLTH 453

Query:   462 PSVEDAAVVSLPDEEAGEIPAACVVMNPN-AKESEDDIMDFVASNVATYKKVRVLHFVDG 520
             P++ DAAV+  PDE AGE+P A VV     A  S  ++  ++ + +A YK+VR +  ++ 
Sbjct:   454 PAIADAAVIGAPDEAAGEVPLAFVVAAAGQAAPSLAEVQAYLDTRLAHYKQVRQMQVIEQ 513

Query:   521 IPKSHSGKIMRRILKD 536
             IPKS SGKI+RR+L+D
Sbjct:   514 IPKSASGKILRRLLRD 529

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54P78	4CL2_DICDI	6, ., 2, ., 1, ., 1, 2	0.3571	0.9246	0.9128	yes	no
Q9LQ12	4CLL1_ARATH	6, ., 2, ., 1, ., -	0.7286	0.9669	0.9704	yes	no
Q7XXL2	4CLL9_ORYSJ	6, ., 2, ., 1, ., -	0.6416	0.9577	0.9387	yes	no
O07610	LCFB_BACSU	6, ., 2, ., 1, ., 3	0.3104	0.8419	0.8927	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ACLL14	acyl-coa ligase (EC-6.2.1.12) (545 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.8531.4.1	hypothetical protein (134 aa)						•			0.899
	gw1.28.655.1	annotation not avaliable (78 aa)						•			0.899
	C4H1	SubName- Full=Trans-cinnamate 4-hydroxylase; (505 aa)						•			0.899
	f5h	SubName- Full=Ferulate-5-hydroxylase; Flags- Precursor; (501 aa)						•			0.899
	PAL	RecName- Full=Phenylalanine ammonia-lyase; EC=4.3.1.24;; This is a key enzyme of plant metaboli [...] (715 aa)						•			0.899
	CAM1	RecName- Full=Caffeoyl-CoA O-methyltransferase 1; EC=2.1.1.104; AltName- Full=Trans-caffeoyl-Co [...] (248 aa)						•			0.899
	fgenesh4_pm.C_LG_XVIII000233	coniferyl-aldehyde dehydrogenase (EC-1.2.1.68) (497 aa)						•			0.899
	CAML3	trans-caffeoyl-coa 3-o-methyltransferase-like protein (EC-2.1.1.104) (234 aa)						•			0.899
	C4H3	SubName- Full=Trans-cinnamate 4-hydroxylase; (465 aa)						•			0.899
	HCQ2	hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase (EC-2.3.1.133) (445 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	544
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	0.0
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	0.0
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-165
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-163
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-136
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-132
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	1e-113
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	1e-112
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-105
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	1e-103
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-102
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-102
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	1e-101
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	6e-86
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-82
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	5e-82
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	4e-80
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-79
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	8e-79
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-78
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-75
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	7e-73
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	3e-72
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	6e-71
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-70
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	2e-70
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-69
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-69
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	4e-68
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-66
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	2e-64
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	4e-63
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	1e-62
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	3e-62
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	4e-61
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	2e-59
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	4e-59
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-55
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	5e-55
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	5e-55
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	6e-55
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	8e-55
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	7e-54
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	1e-53
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-52
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	7e-52
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-51
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	4e-51
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	4e-51
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-50
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	1e-50
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	2e-50
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	4e-50
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-49
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-48
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-48
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	6e-47
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	8e-47
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	9e-47
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	2e-46
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	4e-46
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	1e-45
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-44
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-44
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	4e-44
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-43
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	1e-42
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	9e-42
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	2e-41
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	4e-41
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	7e-41
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	2e-40
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-40
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	3e-40
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	4e-39
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	7e-39
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	9e-39
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	3e-38
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	5e-38
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	8e-38
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	3e-37
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	8e-37
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	1e-36
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	4e-36
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	5e-36
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	8e-36
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	2e-35
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	2e-35
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	3e-35
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	8e-35
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-34
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	3e-34
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	5e-34
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	2e-32
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	2e-32
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	1e-31
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	6e-31
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	1e-30
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	3e-30
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	6e-30
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	7e-29
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	1e-28
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	8e-28
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	1e-27
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	1e-27
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	9e-27
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	1e-26
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	2e-26
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	5e-26
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	9e-26
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	5e-25
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	6e-25
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	6e-25
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	2e-24
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	4e-24
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	2e-22
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	2e-22
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	6e-22
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	9e-21
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	2e-20
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	2e-20
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	8e-20
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	3e-19
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	9e-19
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	3e-18
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	3e-18
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-18
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	6e-18
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	7e-18
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	2e-17
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	2e-17
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	4e-17
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	6e-17
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	7e-17
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	8e-17
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	1e-16
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	8e-16
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-15
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-15
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	2e-15
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	7e-15
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-14
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	1e-14
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	1e-14
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-14
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	3e-14
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	3e-14
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	3e-14
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	4e-14
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	5e-14
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	9e-14
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	2e-13
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	2e-13
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-13
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	5e-13
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	9e-13
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	2e-12
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	5e-12
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	8e-12
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	8e-12
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-11
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	2e-11
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	3e-11
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	2e-10
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	2e-10
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	8e-10
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	9e-10
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	9e-10
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-09
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	2e-09
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	2e-08
pfam13193	43	pfam13193, DUF4009, Domain of unknown function (DU	5e-08
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	6e-08
cd05905	556	cd05905, Dip2, Disco-interacting protein 2 (Dip2)	3e-07
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	6e-07
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	6e-07
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	7e-07
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	8e-07
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	1e-06
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	2e-06
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	4e-06
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	7e-06
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	1e-05
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	1e-05
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	1e-05
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-05
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	2e-05
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	3e-05
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	3e-05
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	3e-05
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	3e-05
COG1541	438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	6e-05
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	7e-05
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	1e-04
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-04
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	1e-04
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	3e-04
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	8e-04
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	8e-04
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	0.001
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	0.001
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	0.001
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	0.003

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  947 bits (2449), Expect = 0.0
 Identities = 431/544 (79%), Positives = 483/544 (88%), Gaps = 11/544 (2%)

Query: 11  VPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVA 70
           + +    D EHIFRSR+P+VPVP+ +TLPDFVLQDAELYADKVAFVEAV+GKA TY +V 
Sbjct: 3   MEIQKQEDNEHIFRSRYPSVPVPDKLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVV 62

Query: 71  RDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQ 130
           RDTR FAKALRSLGLRKGQVV+VVLPNVAEYGIVALGIMAAGGVFSGANPTA  SE+KKQ
Sbjct: 63  RDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQ 122

Query: 131 VDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDV 190
            +AA AKLIV+    Y KVKGLGLP+IVLGEE+IE A+NW EL+EAAD+AG+   N++ +
Sbjct: 123 AEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNEE-I 181

Query: 191 KQTDLW----------ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYG 240
            QTDL           ISKGVMLTHRNLVANLCS+LFSV PEMIGQV TLGLIPFFHIYG
Sbjct: 182 LQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYG 241

Query: 241 ITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLS 300
           ITGICCATLRNKGKVV+M+RFELR FL+ALIT EV+FAPIVPPIIL+LVK+PIV+EFDLS
Sbjct: 242 ITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLS 301

Query: 301 KLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKN 360
           KL+L+A+MTAAAPLAP+LL++FE KFPGVQVQEAYGLTEHSCITLT+GDP      +KKN
Sbjct: 302 KLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKN 361

Query: 361 SVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHT 420
           SVGFILPNLEVKFI+P+TG+SLP NTPGELCVRSQCVMQGYYNN+EET RTID++GWLHT
Sbjct: 362 SVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHT 421

Query: 421 GDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEI 480
           GDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV LPDEEAGEI
Sbjct: 422 GDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEI 481

Query: 481 PAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE 540
           PAACVV+NP AKESE+DI++FVA+NVA YKKVRV+ FVD IPKS SGKIMRR+LK+KML 
Sbjct: 482 PAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLS 541

Query: 541 KMRK 544
             + 
Sbjct: 542 INKA 545

Length = 546

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  662 bits (1710), Expect = 0.0
 Identities = 243/514 (47%), Positives = 330/514 (64%), Gaps = 21/514 (4%)

Query: 32  VPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVV 91
           +P++++L    L  A  + D+ A ++A +G+A TYA++ R  R  A  L + G RKG VV
Sbjct: 1   IPKDLSLDSASLLFASEFGDRPALIDAATGRALTYAELERLVRRLAAGLAARGGRKGDVV 60

Query: 92  IVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKG 151
           +++ PN  E+ +V L +++AG V + ANP    +E+ KQV  + AKL ++ + + EK+  
Sbjct: 61  LLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKLAS 120

Query: 152 LGL-PIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDL----------WISKG 200
           L L P+++L      SA     L     +          +KQ D+            SKG
Sbjct: 121 LALEPVVLLDSADDGSAAIDDLLFADEPEPPV-----VVIKQDDVAALPYSSGTTGRSKG 175

Query: 201 VMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR 260
           VMLTHRNL+AN+   +    P    +  TL ++P FHIYG+T I  A LR    VV+M R
Sbjct: 176 VMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPR 235

Query: 261 FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLS 320
           F+L  FL A+  ++VT  P+VPPI+L+LVK PIVD++DLS L  + + + AAPL  +L  
Sbjct: 236 FDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVDKYDLSSL--KQIGSGAAPLGKELAE 293

Query: 321 SFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGK 380
           +F  +FPGV++ + YG+TE S +T     P       K  SVG ++PN+E K ++PETG+
Sbjct: 294 AFRARFPGVELGQGYGMTESSPVTTMCPVPEK---DPKPGSVGRLVPNVEAKIVDPETGE 350

Query: 381 SLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKE 440
           SLP N PGEL VR   VM+GY NN E TA TIDK+GWLHTGD+GY D+DG +FIVDR+KE
Sbjct: 351 SLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKE 410

Query: 441 LIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMD 500
           LIKYKGFQVAPAELEA+LL+HP + DAAV+  PDEEAGEIP A VV  P ++ SED++M 
Sbjct: 411 LIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVRQPGSELSEDEVMQ 470

Query: 501 FVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
           FVA  VA YKKVR + FVD IPKS SGKI+RR L
Sbjct: 471 FVAKQVAPYKKVRKVVFVDAIPKSPSGKILRREL 504

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  479 bits (1235), Expect = e-165
 Identities = 224/547 (40%), Positives = 332/547 (60%), Gaps = 35/547 (6%)

Query: 14  AAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDT 73
            A+  EE IFRS+ P + +P ++ L D+  +    ++D+   ++  +G+ YTYA V   +
Sbjct: 1   EASASEEFIFRSKLPDIYIPNHLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLS 60

Query: 74  RGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDA 133
           R  A  L  LG+R+G VV+++LPN  E+ +  LG    G V + ANP    +E+ KQ  A
Sbjct: 61  RRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKA 120

Query: 134 ADAKLIVSYAPIYEKVKGL----GLPIIVLGEERIESAINWSELIEAADKAGNNFS-NDD 188
           + AKLI++ +   +K+KGL    G+ ++ + +   E  +++SEL +A +        + D
Sbjct: 121 SGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPP-EGCLHFSELTQADENELPEVEISPD 179

Query: 189 DV-------KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGL--------- 232
           DV         T L   KGVMLTH+ LV        SV  ++ G+   L           
Sbjct: 180 DVVALPYSSGTTGL--PKGVMLTHKGLVT-------SVAQQVDGENPNLYFHSDDVILCV 230

Query: 233 IPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDP 292
           +P FHIY +  +    LR    +++M +FE+ A L+ +  H+VT AP VPPI+L++ K P
Sbjct: 231 LPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSP 290

Query: 293 IVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHS-CITLTYGDPA 351
           +V+++DLS   +R V++ AAPL  +L  +F  K P   + + YG+TE    + +      
Sbjct: 291 VVEKYDLS--SIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAK 348

Query: 352 NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETART 411
            P    K  S G ++ N E+K ++PETG SLP N PGE+C+R   +M+GY N+ E TA T
Sbjct: 349 EPFP-VKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANT 407

Query: 412 IDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS 471
           IDK+GWLHTGDIGYIDDD ++FIVDR+KELIKYKGFQVAPAELEA+L++HPS+ DAAVV 
Sbjct: 408 IDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVP 467

Query: 472 LPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMR 531
           + DE AGE+P A VV +  ++ +ED+I  FVA  V  YK++  + FVD IPK+ SGKI+R
Sbjct: 468 MKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILR 527

Query: 532 RILKDKM 538
           + L+ K+
Sbjct: 528 KDLRAKL 534

Length = 537

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  471 bits (1215), Expect = e-163
 Identities = 202/497 (40%), Positives = 284/497 (57%), Gaps = 30/497 (6%)

Query: 54  AFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG 113
           A ++A +G   T+A + +     AK LR LGL++G VV ++ PN  E+  V LG +AAGG
Sbjct: 1   ALIDADTGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGG 60

Query: 114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKV----KGLGL--PIIVLGEERIESA 167
           + S ANP+    EL  Q+  +  KLI       +KV    K LG    IIVL        
Sbjct: 61  IVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVL 120

Query: 168 ---INWSELIEAADKAGNNFSNDDDVKQTDLWI---------SKGVMLTHRNLVANLCST 215
                    + A D+     +   D K     +          KGVML+H+N++ANL   
Sbjct: 121 RIEDLLEPRLGAEDE--FRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQV 178

Query: 216 LFSVVPEMIG-QVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHE 274
             ++           L  +PF+H YG+T    + L     V++M +F+   FL  +  ++
Sbjct: 179 QDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGA-TVIIMPKFDSETFLKLIEKYK 237

Query: 275 VTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEA 334
           VT   +VPPI ++L K P+VD++DLS   LR + + AAPL+ +L     K+FP   +++ 
Sbjct: 238 VTSLFLVPPIAVALAKSPLVDKYDLS--SLRVIFSGAAPLSKELQEELRKRFPNTTIKQG 295

Query: 335 YGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRS 394
           YG+TE    T             K  SVG ++PN+E K ++ + GKSL  N  GELCV+ 
Sbjct: 296 YGMTETGPATTLTPPGDE-----KPGSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKG 350

Query: 395 QCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAEL 454
             +M+GY NN E T  TID++GWLHTGDIGY D+DG+ +IVDR KELIKYKG+QV PAEL
Sbjct: 351 PQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAEL 410

Query: 455 EAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRV 514
           EA+LL HP V DAAV+ +PDE AGE+P A VV+ P +K +E ++ D+VA  VA YK++R 
Sbjct: 411 EAVLLEHPKVADAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKKVAKYKQLRG 470

Query: 515 -LHFVDGIPKSHSGKIM 530
            + FVD IPKS SGKI+
Sbjct: 471 GVVFVDEIPKSPSGKIL 487

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  403 bits (1039), Expect = e-136
 Identities = 175/509 (34%), Positives = 255/509 (50%), Gaps = 52/509 (10%)

Query: 38  LPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPN 97
           L D + + A  + D+ A      G+  TYA++   +  FA  L+ LG++KG  V ++LPN
Sbjct: 1   LADLLERAARRFPDRPALTF--FGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPN 58

Query: 98  VAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPII 157
             ++ I   GI+ AG V    NP     EL+ Q++ + AK+++                 
Sbjct: 59  CPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIV---------------- 102

Query: 158 VLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLW----------ISKGVMLTHRN 207
                    AI++ + + +            D    DL           + KG MLTHRN
Sbjct: 103 ---------AISFEDALASGAPLPLPVELSPD----DLAVLQYTGGTTGVPKGAMLTHRN 149

Query: 208 LVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFL 267
           LVAN+      V     G+   L  +P FHI+G+T      LR     V++  F     L
Sbjct: 150 LVANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVL 209

Query: 268 DALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFP 327
             +  +  T  P VP +  +L+  P   ++D S   LR  ++  APL  ++   FE+K  
Sbjct: 210 KEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFS--SLRLCISGGAPLPVEVAERFEEKT- 266

Query: 328 GVQVQEAYGLTEHSCITLTYGDPANPSAGSKKN-SVGFILPNLEVKFINPETGKSLPSNT 386
           G  + E YGLTE S +T       NP  G +K  S+G  LP  EVK ++ E G  LP   
Sbjct: 267 GAPLVEGYGLTETSPVTT-----VNPLDGERKPGSIGLPLPGTEVKIVDDE-GNELPPGE 320

Query: 387 PGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKG 446
            GEL VR   VM+GY+N  EETA  +  +GWL TGDIGY+D+DG  +IVDR K++I   G
Sbjct: 321 VGELVVRGPQVMKGYWNRPEETAEVLT-DGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGG 379

Query: 447 FQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNV 506
           F V P E+E +L +HP+V +AAVV +PD   GE   A VV+   A  +E++++ F    +
Sbjct: 380 FNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASLTEEELIAFCRERL 439

Query: 507 ATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
           A YK  R + F D +PKS  GKI+RR L+
Sbjct: 440 AAYKVPRQVEFRDELPKSAVGKILRRELR 468

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  394 bits (1013), Expect = e-132
 Identities = 175/525 (33%), Positives = 273/525 (52%), Gaps = 22/525 (4%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           TL   + + A    D+ A +    G   TY ++ R     A AL++LG++ G  V ++LP
Sbjct: 12  TLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLP 71

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV---SYAPIYEKVKGLG 153
           N  E+ I  L  + AG V    NP     EL   ++ A AK+++    +A + E V    
Sbjct: 72  NSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEAL 131

Query: 154 LPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDL----------WISKGVML 203
             ++V+             L   A +     ++   V   DL           + KGV+L
Sbjct: 132 PVVLVVLLVGDADDRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVL 191

Query: 204 THRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM--NRF 261
           THRNL+AN      ++   +      L  +P FHI+G+     A L   G +V++    F
Sbjct: 192 THRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPF 251

Query: 262 ELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSS 321
           +    L  +  ++VT    VP  +  L+ +P  D+ DLS   LR V++  APL P+LL  
Sbjct: 252 DPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLS-SSLRLVLSGGAPLPPELLER 310

Query: 322 FEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKS 381
           FE++F  + + E YGLTE S +             +K  SVG  LP +EV+ ++P+ G+ 
Sbjct: 311 FEERFGPIAILEGYGLTETSPVVTI---NPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEV 367

Query: 382 LPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKEL 441
           LP    GE+ VR   VM+GY+N  E TA   D++GWL TGD+GY+D+DG ++IV R+K+L
Sbjct: 368 LP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDL 426

Query: 442 IKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP--NAKESEDDIM 499
           I   G  + P E+EA+L  HP+V +AAVV +PDE  GE   A VV+ P  +A+ + +++ 
Sbjct: 427 IISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELR 486

Query: 500 DFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK 544
            F+   +A YK  R++ FVD +P++ SGKI RR L+++   + R 
Sbjct: 487 AFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRAEPRL 531

Length = 534

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  345 bits (888), Expect = e-113
 Identities = 170/535 (31%), Positives = 263/535 (49%), Gaps = 49/535 (9%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           T+   +   A  + DK A      G+  TYA++       A ALR+LG++KG  V V   
Sbjct: 7   TIGRILRHGARKHPDKEAVYFD--GRRTTYAELDERVNRLANALRALGVKKGDRVAVFDW 64

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV---SYAPIYEKVKGLG 153
           N  EY      +   G V    N      E+   ++ A+ ++++    + P+   +    
Sbjct: 65  NSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQ- 123

Query: 154 LP----IIVLGE----ERIESAINWSELIEAADKAGNNFSNDDDVKQTD-------LWIS 198
           LP    +IV G+            + EL+ AA       S+  D    D       L+ S
Sbjct: 124 LPTVRTVIVEGDGPAAPLAPEVGEYEELLAAA-------SDTFDFPDIDENDAAAMLYTS 176

Query: 199 ------KGVMLTHRNLVANL--CSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLR 250
                 KGV+L+HRNL  +         +  + +     L ++P FH++   G+    L 
Sbjct: 177 GTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVY----LVIVPMFHVHA-WGLPYLALM 231

Query: 251 NKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTA 310
              K V+  RF+    LD + T  VTF   VP I   L+K P     D S L  R V+  
Sbjct: 232 AGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSL--RLVIYG 289

Query: 311 AAPLAPDLLSSFEKKFPGVQVQEAYGLTEHS-CITLTYGDPANPSAGSKKNSVGFILPNL 369
            A L P LL  F++KF G+ + + YG+TE S  +++   +   P   +K+ S G  LP +
Sbjct: 290 GAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGV 348

Query: 370 EVKFINPETGKSLPSN--TPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYID 427
           E + ++ + G  LP +    GE+ VR   +MQGY+N  E TA TID  GWLHTGD+GYID
Sbjct: 349 EARIVDDD-GDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETID-GGWLHTGDVGYID 406

Query: 428 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVM 487
           +DG ++I DRIK++I   G  + P ELE  L  HP+V + AV+ +PDE+ GE P A VV+
Sbjct: 407 EDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVL 466

Query: 488 NPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 542
            P A     ++  F+   +A +K  + + FVD +P++  GKI++R+L+++  E  
Sbjct: 467 KPGATLDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEGK 521

Length = 521

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  344 bits (884), Expect = e-112
 Identities = 196/536 (36%), Positives = 297/536 (55%), Gaps = 30/536 (5%)

Query: 22  IFRSRHPAVPVPE--NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKA 79
           I+ S+HP VP+P   N+    F+      +    A +++ +G + +Y+++    +  A  
Sbjct: 24  IYSSKHPPVPLPSDPNLDAVSFIFSHHN-HNGDTALIDSSTGFSISYSELQPLVKSMAAG 82

Query: 80  L-RSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKL 138
           L   +G+R+G VV+++LPN   + ++ L +++ GG+ +  NP++   E+KK+V      L
Sbjct: 83  LYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGL 142

Query: 139 IVSYAPIYEKVKGLGLPIIVLGEE------RIESAINWSELIEAADKAGNNFSNDDDV-- 190
             +     EK+  LG+P+I + E       RIE    +  + E  D         DDV  
Sbjct: 143 AFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPKFYELIKEDFDFVPKPVIKQDDVAA 202

Query: 191 ---KQTDLWISKGVMLTHRNLVANLCSTLF-----SVVPEMIGQVTTLGLIPFFHIYGIT 242
                     SKGV+LTHRNL+A +   LF     S           L  +P FHIYG++
Sbjct: 203 IMYSSGTTGASKGVVLTHRNLIAMV--ELFVRFEASQYEYPGSDNVYLAALPMFHIYGLS 260

Query: 243 GICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVK--DPIVDEFDLS 300
                 L     +V+M RF+    +  +   +VT  P+VPPI+++L K    +  E   S
Sbjct: 261 LFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKS 320

Query: 301 KLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKN 360
              L+ V   AAPL+   +  F +  P V   + YG+TE + +  T G   N    SK +
Sbjct: 321 ---LKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVG-TRG--FNTEKLSKYS 374

Query: 361 SVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHT 420
           SVG + PN++ K ++  TG  LP    GEL ++   VM+GY NN + T  TIDK+GWL T
Sbjct: 375 SVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRT 434

Query: 421 GDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEI 480
           GDI Y D+DG ++IVDR+KE+IKYKGFQ+APA+LEA+L++HP + DAAV ++PD+E GEI
Sbjct: 435 GDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEI 494

Query: 481 PAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
           P A VV    +  S++ ++++VA  VA YKKVR + FV  IPKS +GKI+RR LK 
Sbjct: 495 PVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKR 550

Length = 560

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  319 bits (820), Expect = e-105
 Identities = 135/339 (39%), Positives = 204/339 (60%), Gaps = 11/339 (3%)

Query: 199 KGVMLTHRNLVANLCSTLFSV-VPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVM 257
           KG MLTHRN++ N  S    + + E      TL  +P FH++G+     A+L     +V+
Sbjct: 18  KGAMLTHRNVLNNGYSIARRLGLTE---GDRTLVPVPLFHVFGLVLGVLASLTAGATLVL 74

Query: 258 MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPD 317
           M +F+  A L  +    +T    VP + ++L++ P  D+FDLS   LR  ++  AP+ P+
Sbjct: 75  MEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLS--SLRTGISGGAPVPPE 132

Query: 318 LLSSFEKKFPGVQVQEAYGLTEHS-CITLTYGDPANPSAGSKKNSVGFILPNLEVKFINP 376
           L+    ++FP  ++   YG+TE S   T T GD        +  +VG  LP +EVK ++P
Sbjct: 133 LVRRIREEFPMAEITTGYGMTETSGVGTQTSGDD---PYEDRPGTVGRPLPGVEVKIVDP 189

Query: 377 ETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVD 436
           + G+ +P    GE+CVR   VM+GYYN+ E TA  ID +GWLHTGD+GY+D+DG + IV 
Sbjct: 190 DGGE-VPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDEDGYLRIVG 248

Query: 437 RIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED 496
           RIK++I   G  + PAE+E  LLTHP+V +AAVV +PDE  GE+ AA VV+ P A  +E+
Sbjct: 249 RIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVLKPGATLTEE 308

Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
           +++ F    +A +K  R + FVD +P++ SGKI +  L+
Sbjct: 309 ELIAFCRGRLARFKVPRYVRFVDELPRTASGKIQKFKLR 347

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  319 bits (821), Expect = e-103
 Identities = 169/527 (32%), Positives = 263/527 (49%), Gaps = 45/527 (8%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           TLP+ + + A  + DK A+V     +  TYA++    R  A AL +LG+ KG  V +  P
Sbjct: 6   TLPELLARAARRFGDKEAYVFG--DQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAP 63

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVS---YAPIYEKVKGLG 153
           N   + I ALG + AG V    N    A E    +   DAK +     +  +        
Sbjct: 64  NSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATT-R 122

Query: 154 LP----IIVL----GEERIESAINWSELIEAADKAGNNFS-NDDDVKQTDLWI------- 197
           LP    +++      +   E    +++ + A D A      + DDV   D+         
Sbjct: 123 LPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERAPEVDPDDV--ADILFTSGTTGR 180

Query: 198 SKGVMLTHRNLVANLCSTLFSVVPEMIGQVT----TLGLIPFFHIYGITGICCATLRNKG 253
            KG MLTHR L++N      +   E    +T     L   PFFH++G      A L    
Sbjct: 181 PKGAMLTHRQLLSN-----AADWAE-YLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGA 234

Query: 254 KVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAP 313
            ++ +  F+       + T  +T  P  P +  SL++ P     DLS   LR  +T AA 
Sbjct: 235 TILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLS--SLRLAVTGAAS 292

Query: 314 LAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTY---GDPANPSAGSKKNSVGFILPNLE 370
           +   LL  FE +     V   YGL+E S +T T+    D     AG+    +G  +  +E
Sbjct: 293 MPVALLERFESELGVDIVLTGYGLSEASGVT-TFNRLDDDRKTVAGT----IGTAIAGVE 347

Query: 371 VKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDG 430
            K +N   G+ +P    GEL VR   VM+GYY++ E TA  ID +GWLHTGD+G +D++G
Sbjct: 348 NKIVNEL-GEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEG 406

Query: 431 DIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN 490
            ++IVDR K++    GF V PAE+E +L  HP+V +AAV+ +PDE  GE+  A VV+ P 
Sbjct: 407 YLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPG 466

Query: 491 AKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
           A+ +E++++ +   ++A YK  R + F+D +PK+ +GK+++R L++K
Sbjct: 467 AELTEEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALREK 513

Length = 513

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  315 bits (809), Expect = e-102
 Identities = 142/477 (29%), Positives = 231/477 (48%), Gaps = 54/477 (11%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH 123
            TYA++       A  L+  G+RKG  V + + N  ++ I    I+ AG V    NP   
Sbjct: 2   ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61

Query: 124 ASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNN 183
            +EL+  ++ + A+++                 IV  E    + I ++        +G  
Sbjct: 62  EAELEHILNDSGARVL-----------------IVGSELDDVAVIPYT--------SGT- 95

Query: 184 FSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITG 243
                    T L   KG M THR ++A   +   +    +      L  +P FH+ G+ G
Sbjct: 96  ---------TGL--PKGCMHTHRTVLATAAA--SAAWSGLTPDSVLLAFLPLFHVAGMQG 142

Query: 244 ICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQ 303
              A +     +V++ R++  A   A+  + VT    +  +++ L+  P   ++DLS L 
Sbjct: 143 SMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRFADYDLSSL- 201

Query: 304 LRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE-HSCITLTYGDPANPSAGSKKNSV 362
            + V    A L P +     K   G+  +E YGLTE H+C         NP    K   +
Sbjct: 202 -KVVGGGGAALPPAVAERL-KALTGLLYEEGYGLTETHTCTHF------NPPDRPKPQCL 253

Query: 363 GFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA---RTIDKNGWLH 419
           G  +   + + I+PETG+ LP    GE+ VR   V +GY+N  E TA     +D   +  
Sbjct: 254 GIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFR 313

Query: 420 TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGE 479
           TGD+GYID++G  F +DR+K +I   G++V PAE+EA+L  HP+V +  V+  PD   GE
Sbjct: 314 TGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGE 373

Query: 480 IPAACVVMNPNA--KESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
           +  A VV+ P+   K +E+DI+++    +A YK  R++ FVD +PK+ SGK++ R+L
Sbjct: 374 VVKAFVVLKPDYRGKVTEEDIIEWCRERMAAYKYPRIIEFVDELPKTASGKVLWRLL 430

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  310 bits (797), Expect = e-102
 Identities = 128/338 (37%), Positives = 192/338 (56%), Gaps = 11/338 (3%)

Query: 198 SKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVM 257
            KGVMLTHRNL+AN  + L  V  ++      L   P +H           L   G VV+
Sbjct: 16  PKGVMLTHRNLLANAVNALAGV--DLSPGDVYLLAAPLYHA-AGGLFLLPALAAGGTVVL 72

Query: 258 MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPD 317
           M +F+  A LD +  H VT   +VP +   L++ P    +DLS   LR ++  AAP+  +
Sbjct: 73  MPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLS--SLRLIIYGAAPMPAE 130

Query: 318 LLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPE 377
           L  +  + + G    + YG+TE +  T T   P +     K  SVG  +P +EV+ ++ +
Sbjct: 131 LKRAMIE-WFGPVFVQGYGMTE-TGPTTTLLSPED--WLRKLGSVGRPVPGVEVRIVDED 186

Query: 378 TGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDR 437
            G+ LP    GE+ VR   VM GY+N  E TA  + ++GWLHTGD+GY+D+DG ++IVDR
Sbjct: 187 -GRELPPGEVGEIVVRGPAVMAGYWNRPEATAEAL-RDGWLHTGDLGYLDEDGYLYIVDR 244

Query: 438 IKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDD 497
            K++I   G  + PAE+E +LL HP+V D AV+ +PDEE GE   A VV+ P A    ++
Sbjct: 245 KKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVLRPGATLDAEE 304

Query: 498 IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
           ++ F    +A YK  + + FVD +P++ SGKI++R L+
Sbjct: 305 LIAFCRERLAGYKVPKSVEFVDELPRNASGKILKRELR 342

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  310 bits (795), Expect = e-101
 Identities = 126/421 (29%), Positives = 202/421 (47%), Gaps = 25/421 (5%)

Query: 65  TYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHA 124
           TY ++       A ALR+LG+  G  V ++LPN  E+ +  L ++ AG  +   +P+  A
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 125 SELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGE--ERIESAINWSELIEAADKAGN 182
             L   ++ ++AK++++   +  K+  + L ++VL       +       L +      +
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGAS 120

Query: 183 NFSNDDDVKQTDL-WI---------SKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGL 232
                  V   DL +I          KGVMLTHRNL+A            +      L L
Sbjct: 121 AEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF--GLTPGDRVLLL 178

Query: 233 IPFFHIYGITGICCATLRNKGKVVMMNRFEL--RAFLDALITHEVTFAPIVPPIILSLVK 290
           +P      +  I    L   G +V++ +F L     LD +  ++VT    VP ++  L+K
Sbjct: 179 LPLHFDGSVWEIFGP-LLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLLK 237

Query: 291 DPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDP 350
            P   ++DLS L  R V++   PL P+LL    ++F GV +   YG TE + +       
Sbjct: 238 APEEKKYDLSSL--RLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPG 295

Query: 351 ANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETAR 410
                  K  S+G  LP +EVK +  E G+ +P    GELC+R   V +GY N+ E TA 
Sbjct: 296 DPEV---KPGSIGRPLPGVEVK-VLDEEGEPVPPGEVGELCIRGPGVARGYLNDPELTAE 351

Query: 411 TIDKNGWL--HTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAA 468
              ++GW    TGD+G  D+DG + I+ R  + +K +G ++ P E+EA+LL HP V +AA
Sbjct: 352 RFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAA 411

Query: 469 V 469
           V
Sbjct: 412 V 412

Length = 412

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  269 bits (689), Expect = 6e-86
 Identities = 132/334 (39%), Positives = 191/334 (57%), Gaps = 13/334 (3%)

Query: 199 KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM 258
           KGV+L+HRNL+AN  +   ++          L ++P FH+ G        L   G VV+ 
Sbjct: 16  KGVVLSHRNLLANAQALAQAIGLT--EGDVLLSVLPLFHVVGGGSGLLGALLAGGTVVLY 73

Query: 259 NRFE-LRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPD 317
             F    +FL+ +  + VT    VP +  +L K      +DLS L  R +++   PL+P+
Sbjct: 74  EGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSL--RLLISGGEPLSPE 131

Query: 318 LLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKK-NSVGFILPNLEVKFINP 376
           LL  FE+  PG  + E YGLTE S +T T     NP +  KK  +VG  +P +EV+ ++ 
Sbjct: 132 LLERFEE-RPGAPILEGYGLTETSVVTST-----NPDSELKKPGTVGRPVPGVEVRVVDE 185

Query: 377 ETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVD 436
           E GK LP    GEL VR   VM+GY+NN  ET     ++GW  TGD+GY+D++G ++I  
Sbjct: 186 E-GKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITG 244

Query: 437 RIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED 496
           R K+LIK  G  V PAE+E++LL HP+V +AAVV +PDE+ GE   A VV+ P A    +
Sbjct: 245 RSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALAE 304

Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIM 530
           ++   +   +A YK  RV+ FVD +PK+ SGKI 
Sbjct: 305 ELKAHLRERLAPYKVPRVIEFVDELPKTASGKID 338

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  268 bits (687), Expect = 1e-82
 Identities = 181/556 (32%), Positives = 265/556 (47%), Gaps = 69/556 (12%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           TL D        + D+ A      G   TYA++ +  R  A  LR+LG+R G  V +VLP
Sbjct: 33  TLVDLYDNAVARFGDRPAL--DFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLP 90

Query: 97  N-----VAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSY---APIYEK 148
           N     VA Y ++ LG      V    NP   A EL+   +   A++ + +   AP  E+
Sbjct: 91  NCPQHIVAFYAVLRLG-----AVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVER 145

Query: 149 VKG-----------------------LGLPIIVLGEER------IESAINWSELIEAADK 179
           ++                        L LPI  L + R          + W  L++AA  
Sbjct: 146 LRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIG 205

Query: 180 AGNNFSNDDDVKQTD----LWIS------KGVMLTHRNLVANLCSTLFSVVPEMI-GQVT 228
              +  +       D    L+ S      KG  LTHRNL AN      + VP +  G   
Sbjct: 206 GDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGK-AWVPGLGDGPER 264

Query: 229 TLGLIPFFHIYGITGICCATLRNK--GKVVMMNRFELRAFLDALITHEVTFAPIVPPIIL 286
            L  +P FH YG+T   C TL     G++V++   ++   LDA+  H  T+ P VPP+  
Sbjct: 265 VLAALPMFHAYGLT--LCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYE 322

Query: 287 SLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLT 346
            + +       DLS +  R   + A  L    +  +EK   G+ V E YGLTE S I + 
Sbjct: 323 KIAEAAEERGVDLSGV--RNAFSGAMALPVSTVELWEKLTGGLLV-EGYGLTETSPIIV- 378

Query: 347 YGDPANPSAGSKKNSVGFILPNLEVKFINPET-GKSLPSNTPGELCVRSQCVMQGYYNNE 405
            G+P +     +   VG   P+ EV+ ++PE   +++P    GEL VR   V +GY+N  
Sbjct: 379 -GNPMSDDR--RPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRP 435

Query: 406 EETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVE 465
           EETA++   +GW  TGD+  +++DG I IVDRIKELI   GF V PAE+E +L  HP VE
Sbjct: 436 EETAKSF-LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVE 494

Query: 466 DAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSH 525
           DAAVV LP E+  E   A VV+ P A    + +  +   ++  YK  R  + VD +P+  
Sbjct: 495 DAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQ 554

Query: 526 SGKIMRRILKDKMLEK 541
            GK+ RR +++++LEK
Sbjct: 555 LGKVRRREVREELLEK 570

Length = 573

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  265 bits (680), Expect = 5e-82
 Identities = 162/562 (28%), Positives = 264/562 (46%), Gaps = 65/562 (11%)

Query: 32  VPENVTLPDFVLQD-----AELYADKVAFVEAVSGKAYTYAQVARDTRGFAKAL-RSLGL 85
           +P+++TLP+  L       A  Y DK A V    G+A +Y ++  +    A  L +  G+
Sbjct: 1   LPKSLTLPETSLFHNLEVSARRYPDKTAIV--FYGRAISYRELLEEAERLAGYLQQECGV 58

Query: 86  RKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPI 145
           RKG  V++ + N  ++ I    I+ A  V    NP     EL   V  + A++ +  + +
Sbjct: 59  RKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSEL 118

Query: 146 YEKVK----GLGLP-IIV------------------------LGEERIESAINWSELIEA 176
             KV      L L  +IV                        L        + W E + A
Sbjct: 119 APKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAA 178

Query: 177 ADKAGNNFSNDDDVK-------QTDLWISKGVMLTHRNLVANLCSTL--FSVVPEMIGQV 227
                 + +  DD+         T +   KG M THR ++AN   ++   +  PE +   
Sbjct: 179 GLAPPPHTAGPDDLAVLPYTSGTTGV--PKGCMHTHRTVMANAVGSVLWSNSTPESV--- 233

Query: 228 TTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILS 287
             L ++P FH+ G+     A +     VV+M R++  A    +  + VT    +P +++ 
Sbjct: 234 -VLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVD 292

Query: 288 LVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTY 347
            +  P + E DLS L  R +    A + P+ ++   K+  G+   E YGLTE    T + 
Sbjct: 293 FLASPGLAERDLSSL--RYIGGGGAAM-PEAVAERLKELTGLDYVEGYGLTETMAQTHS- 348

Query: 348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEE 407
               NP    K   +G     ++ + I+PET + LP    GE+ V    V +GY+N  E 
Sbjct: 349 ----NPPDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEA 404

Query: 408 TAR---TIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSV 464
           TA     ID   +  TGD+G +D++G  FI DR+K +I   GF+V PAE+E +L  HP++
Sbjct: 405 TAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAI 464

Query: 465 EDAAVVSLPDEEAGEIPAACVVMNPNA--KESEDDIMDFVASNVATYKKVRVLHFVDGIP 522
           ++A V++ PD   GE   A VV+ P A  K +E++I+ +   ++A YK  R++ FVD +P
Sbjct: 465 QEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFVDSLP 524

Query: 523 KSHSGKIMRRILKDKMLEKMRK 544
           KS SGKI+ R L+++   +  K
Sbjct: 525 KSGSGKILWRQLQEQEKARAAK 546

Length = 546

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  254 bits (651), Expect = 4e-80
 Identities = 127/342 (37%), Positives = 183/342 (53%), Gaps = 18/342 (5%)

Query: 199 KGVMLTHRNLVA---NLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV 255
           KGV LTH+NL+A   N+  +      ++      L ++P FHI+G+     ATL   G V
Sbjct: 18  KGVPLTHKNLLASARNIAKSH-----KLTPSDRCLNVMPLFHIHGLIVSLLATLLAGGSV 72

Query: 256 VMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLA 315
           V   +F    F D +  + VT+   VP I   L+K    +       +LR + +A+APL 
Sbjct: 73  VCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPPP-RLRFIRSASAPLP 131

Query: 316 PDLLSSFEKKFPGVQVQEAYGLTEH-SCITLTYGDPANPSAGSKKNSVGFILPNLEVKFI 374
           P +L   EK+F GV V EAYG+TE    I      P     GS    VG      EV  I
Sbjct: 132 PAVLDRLEKRF-GVPVLEAYGMTEAAHQIASNPLPPLVRKPGS----VGRPAGV-EVA-I 184

Query: 375 NPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFI 434
             + G+ LP    GE+ +R   V  GY NN E   R   ++GW  TGD+GY+D+DG +F+
Sbjct: 185 LDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEAN-REAFRDGWFRTGDLGYLDEDGYLFL 243

Query: 435 VDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES 494
             RIKELI   G +++P E+E +LL HP+V +A V  +PDE  GE  AA VV+  ++K +
Sbjct: 244 TGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVT 303

Query: 495 EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
            +++ DF    +A +K  + + FVD +PK  +GKI RR L +
Sbjct: 304 IEELRDFARKRLAAFKVPKKILFVDALPKGATGKIQRRKLAE 345

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  257 bits (658), Expect = 2e-79
 Identities = 130/512 (25%), Positives = 220/512 (42%), Gaps = 52/512 (10%)

Query: 34  ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIV 93
            + TL D +  +A  + D+ A V+    +  TY ++       A  L +LG+  G  V+V
Sbjct: 13  GDQTLGDLLAANAARHPDRTAVVDG--PRRLTYRELDAAVDRLAAGLLALGIGPGDRVLV 70

Query: 94  VLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVS--------YAPI 145
            LPNVAE+ I+   +   G +   A P   A E+      ++AK  +         YA +
Sbjct: 71  QLPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYIIADRFSGFDYAAL 130

Query: 146 YEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTH 205
             ++    LP + L           S                         + K +  TH
Sbjct: 131 ARELLE-ELPDVAL--------FQLSGGTTG--------------------LPKLIPRTH 161

Query: 206 RNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICC-ATLRNKGKVVMMNRFELR 264
            + + +  +   +    +      L ++P  H + ++       L   G VV+ +     
Sbjct: 162 NDYLYS--ARASAEACGLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPD 219

Query: 265 AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEK 324
                +   +VT   +VP ++   ++    D+ DLS L  R +    APL+P+L    E+
Sbjct: 220 VAFPLIEREKVTHTALVPALLNLWLEAAEWDQADLSSL--RVIQVGGAPLSPELARRVEE 277

Query: 325 KFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGF-ILPNLEVKFINPETGKSLP 383
           +  G  +Q+ +G+ E         DP +        + G  I P  E++ ++ + G+ +P
Sbjct: 278 RL-GCPLQQVFGMAEGLVNYTRLDDPPDVIM----RTQGRPISPADEIRIVDDQ-GEPVP 331

Query: 384 SNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIK 443
               GEL  R    ++GYY   E  AR    +G+  TGD+  ID DG   +V RIK+ I 
Sbjct: 332 PGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGYYRVVGRIKDQIN 391

Query: 444 YKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDF-V 502
             G +++P E+E +LL+HP+V DAAVV +PDE  GE   A VV    A  +  ++  F  
Sbjct: 392 RGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAPTLAELRAFLR 451

Query: 503 ASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
              +A +K    L  VD +P +  GK+ ++ L
Sbjct: 452 EQGLAKFKLPDRLEVVDSLPLTPVGKVDKKAL 483

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  257 bits (659), Expect = 8e-79
 Identities = 174/569 (30%), Positives = 263/569 (46%), Gaps = 91/569 (15%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           T+   + + A  Y D+ A V    G  +TY +   +    AK L +LG+ KG  V +  P
Sbjct: 17  TIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAP 76

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELK---KQVD-----AADAKLIVSY-APIYE 147
           NV E+ +        G +    NP    SEL+    Q       AAD      Y A +YE
Sbjct: 77  NVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYE 136

Query: 148 KVKGLG-----------LP----IIVLGEERIESAINWSELIEAA--------DKAGNNF 184
               L            LP    +I LG+E+    +N+ EL+                  
Sbjct: 137 LAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATL 196

Query: 185 SNDDDVK-QTDLWIS------KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGL----- 232
             DD +  Q   + S      KG  LTHRN++ N            IG+   + L     
Sbjct: 197 DPDDPINIQ---YTSGTTGFPKGATLTHRNILNN---------GYFIGE--AMKLTEEDR 242

Query: 233 ----IPFFHIYGI---------TGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAP 279
               +P +H +G+          G   AT+     V     F+  A L A+     T   
Sbjct: 243 LCIPVPLYHCFGMVLGNLACVTHG---ATM-----VYPGEGFDPLATLAAVEEERCTALY 294

Query: 280 IVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE 339
            VP + ++ +  P    FDLS   LR  + A +P   +++     K    +V  AYG+TE
Sbjct: 295 GVPTMFIAELDHPDFARFDLS--SLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTE 352

Query: 340 HS---CITLTYGDPANPSAGSKK-NSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQ 395
            S     T T  DP       K+  +VG  LP+LEVK ++PETG+++P    GELC R  
Sbjct: 353 TSPVSTQTRT-DDPLE-----KRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGY 406

Query: 396 CVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELE 455
            VM+GY+N+ E+TA  ID +GW+HTGD+  +D++G + IV RIK++I   G  + P E+E
Sbjct: 407 SVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIE 466

Query: 456 AILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVL 515
             L THP ++D  VV +PDE+ GE   A +++ P A  +E+D+ DF    +A YK  R +
Sbjct: 467 EFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYI 526

Query: 516 HFVDGIPKSHSGKIMRRILKDKMLEKMRK 544
            FVD  P + +GKI +  +++ M+E++  
Sbjct: 527 RFVDEFPMTVTGKIQKFKMREMMIEELGL 555

Length = 559

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  257 bits (657), Expect = 1e-78
 Identities = 166/534 (31%), Positives = 273/534 (51%), Gaps = 47/534 (8%)

Query: 38  LPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPN 97
           L  +V Q A  Y +K A      GK  T++      + FA  L+ LG+ KG  V ++LPN
Sbjct: 26  LHKYVEQMASRYPEKKAL--HFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPN 83

Query: 98  VAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKV-------- 149
             +  I   G + AGG+    NP     EL+ Q+  + AK+I+    ++ +V        
Sbjct: 84  CPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATK 143

Query: 150 ----------------KGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDV--- 190
                           K L  P +   +  +   ++ SE I   +      +   +V   
Sbjct: 144 IEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCD 203

Query: 191 KQTDLWI----------SKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYG 240
            + DL +           KGVMLTH+NLV+N    +  +     G+   LG++PFFH+YG
Sbjct: 204 PENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYG 263

Query: 241 ITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLS 300
           +T +   ++    K+V++ +F+++   +A+  H+VT  P  P I ++L+  P++ E+D+S
Sbjct: 264 MTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDIS 323

Query: 301 KLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKN 360
              +RA ++ +APL  ++   FE    G ++ E YGLTE S +T +         GS   
Sbjct: 324 --SIRACISGSAPLPVEVQEKFET-VTGGKLVEGYGLTESSPVTHSNFLWEKRVPGS--- 377

Query: 361 SVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHT 420
            +G   P+ E   ++ ETG++LP    GE+ V+   +M+GY+N  EETA  + ++GWLHT
Sbjct: 378 -IGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHT 435

Query: 421 GDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEI 480
           GD+GY+D+DG  ++ DR K++I   GF V P E+E +L  H  V++   + +PD   GE 
Sbjct: 436 GDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGET 495

Query: 481 PAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
             A VV+    + SE+++  F    +A YK  +V  F D +PK+  GKI+RR+L
Sbjct: 496 VKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVL 549

Length = 563

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  242 bits (620), Expect = 2e-75
 Identities = 101/345 (29%), Positives = 165/345 (47%), Gaps = 20/345 (5%)

Query: 199 KGVMLTHRNLVANLCSTLFSVVP--EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVV 256
           KGVML+HRNL A       S+    E+      L ++PF   YG++ +  A  R  G +V
Sbjct: 18  KGVMLSHRNLTAGA----RSIAQYLELTEDDRILAVLPFSFDYGLSQLLTA-FRVGGTLV 72

Query: 257 MMNRFEL-RAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLA 315
           + +RF   R  L  L    +T    VP     L++   +   D     LR +  A   L 
Sbjct: 73  LESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFP--SLRYLTNAGGALP 130

Query: 316 PDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFIN 375
              +    + FP  ++   YGLTE      TY  P       + +S+G  +PN+E+  ++
Sbjct: 131 AKTILQLRRAFPDAKLFSMYGLTE--AFRSTYLPPEE--LDRRPDSIGKAIPNVELWVVD 186

Query: 376 PETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTID-----KNGWLHTGDIGYIDDDG 430
            + G        GEL  R   VM+GY+N+ E TA  +          L+TGD+  +D++G
Sbjct: 187 ED-GNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEG 245

Query: 431 DIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN 490
            ++ V R  ++IK +G++V+P E+E ++  HP V +AAV+ +PD   G+   A VV    
Sbjct: 246 YLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVSADG 305

Query: 491 AKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
               E +++     ++  Y     + FVD +PK+ +GK+ R  L+
Sbjct: 306 ESLDEKELLKHCRKHLPNYMVPAEIVFVDSLPKNANGKVDRSALR 350

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  240 bits (616), Expect = 7e-73
 Identities = 151/503 (30%), Positives = 239/503 (47%), Gaps = 41/503 (8%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH 123
           YTYA   R  R  A AL SLG++ G  V  +  N   +  +   +   G V    NP   
Sbjct: 26  YTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLNPRLS 85

Query: 124 ASELKKQVDAADAKLIV---SYAPIYEKVKGLGLPIIV---------LGEERIESAINWS 171
             ++   ++ A+ K+I     + P+ E +    LP +          + E  + +   + 
Sbjct: 86  PEQIAYIINHAEDKVIFVDDDFLPLLEAIAPR-LPTVKAVVVYDDADMPETSLPNVYAYE 144

Query: 172 ELIEAADKAGNNFSNDDDVKQTDLWIS------KGVMLTHRNLVAN---LCSTLFSVVPE 222
           EL+E           D++      + S      KGV+ +HR+LV +           + E
Sbjct: 145 ELLEEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSE 204

Query: 223 MIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHE-VTFAPIV 281
                T L ++P FH+    G+  A      K+V+  R+   A L  LI  E VT +  V
Sbjct: 205 ---SDTVLPVVPMFHVNA-WGLPYAATMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGV 260

Query: 282 PPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHS 341
           P I L L+     +  DLS L+   V  +A P +  L+   E++  GV+V  A+G+TE S
Sbjct: 261 PTIWLGLLNYLEANGKDLSSLRRVVVGGSALPRS--LIEKLEER--GVEVIHAWGMTETS 316

Query: 342 -CITLTYGDP--ANPSAGSKKN---SVGFILPNLEVKFINPETGKSLPSN--TPGELCVR 393
              T++   P   +     K       G  +P +E++ ++ E G  LP +  T GEL VR
Sbjct: 317 PLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVDDE-GNELPWDGKTVGELVVR 375

Query: 394 SQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAE 453
              V   YY + E     + ++GW  TGD+  ID+DG I I DR K++IK  G  ++  E
Sbjct: 376 GPWVTGSYYKDPE-KTEELTRDGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVE 434

Query: 454 LEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR 513
           LE  L+ HP+V +AAVV +P E+ GE P A VV+ P AK +E+++++ +A  VA +    
Sbjct: 435 LENALMAHPAVAEAAVVGVPHEKWGERPLAVVVLKPGAKVTEEELLEHLAKKVAKWWLPD 494

Query: 514 VLHFVDGIPKSHSGKIMRRILKD 536
            + FVD IPK+  GK  ++ L++
Sbjct: 495 RVVFVDEIPKTSVGKFDKKALRE 517

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  239 bits (612), Expect = 3e-72
 Identities = 133/536 (24%), Positives = 222/536 (41%), Gaps = 50/536 (9%)

Query: 35  NVTLPDFVLQDAELYADKVAFV---EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVV 91
           N+ L            D  A +   E    +  TY  + R+    A AL+ LG  KG  V
Sbjct: 9   NLALNALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRV 68

Query: 92  IVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKG 151
            + +PN  E  I  L     G + +  +P   A  +  ++     K++++    +   K 
Sbjct: 69  AIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKE 128

Query: 152 LGLP-----IIVLGEERIESAINWSELIEAADKAGNNFSND-DDVKQTDLWIS------- 198
           + L      ++          + + E +E A +         DD     L++        
Sbjct: 129 IALLEDADAVLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDP----LFLLYTSGTTG 184

Query: 199 --KGVMLTHRNLVANLCST---LFSVVPE-MIGQVTTLGLIPFFHIYGITGICCATLRNK 252
             KG++ +H   +     T      ++P       +  G      IYG+     + L + 
Sbjct: 185 KPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPG-----WIYGLWYSVFSPLASG 239

Query: 253 GKVVMMNR---FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMT 309
              V+ +    +      +AL  ++VT     P  +  L+K  + + +DLS L  R + +
Sbjct: 240 ATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSL--RVLGS 297

Query: 310 AAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNL 369
           A  PL P+    F     GV + + YG TE     +    P       K  S G  LP  
Sbjct: 298 AGEPLNPEAFEWFYSAL-GVWILDIYGQTETGMGFIAGRPPV------KNGSSGLPLPGY 350

Query: 370 EVKFINPETGKSLPSNTPGELCVRS--QCVMQGYYNNEEETARTIDKNGWLHTGDIGYID 427
            V+ ++ E G  +P    GEL VR     +   Y+N+ E          W  TGD    D
Sbjct: 351 AVRRVDDE-GNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAY-FGRWYRTGDWAERD 407

Query: 428 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVM 487
           +DG  ++  R  ++IK  G ++ P E+E++LL HP+V +AAVV +PD   G+I  A VV+
Sbjct: 408 EDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVL 467

Query: 488 NPNAK--ESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541
               +  E  ++I   VA N+  +   R + FVD +PK+ SGKI RR+L+  + + 
Sbjct: 468 AAGVEPNELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHKG 523

Length = 528

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  235 bits (602), Expect = 6e-71
 Identities = 157/539 (29%), Positives = 247/539 (45%), Gaps = 68/539 (12%)

Query: 40  DFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVA 99
            F+ + A++Y D+ A V     + YTY +     R  A AL  LG+ KG VV V+ PN  
Sbjct: 8   SFLERAAKVYPDRTAVVY--GDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTP 65

Query: 100 EYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV---SYAPIYEKVKGL--GL 154
                  G+  AG V    N    A ++   ++ ++AK++     +  + E+   L    
Sbjct: 66  AMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTK 125

Query: 155 PIIVLGEERIESAINWSELI--EAADKAGNNFSNDDDVKQTDLW--IS-----------K 199
            II      I  A   SE    E     G+   +   +   D W  IS           K
Sbjct: 126 EIIDTEIIVISPAAEDSEEGDYEDLLAGGD--PDPLPIPPDDEWDPISLNYTSGTTGNPK 183

Query: 200 GVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFH------IYGITGICCATLRNKG 253
           GV+ THR   A L +    +   M  +   L  +P FH       + IT +        G
Sbjct: 184 GVVYTHRG--AYLNALGNVIEWGMPDRPVYLWTLPMFHCNGWCFPWAITAVG-------G 234

Query: 254 KVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAP 313
             V + + +  A  D +  H+VT     P ++  L   P  D+  L +  +R VMTA AP
Sbjct: 235 THVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNMLANAPEADKLPLPR-PVR-VMTAGAP 292

Query: 314 LAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYG-----------DPANPSAGSKKNS- 361
             P ++   E+   G +V   YGLTE      TYG           D       ++  + 
Sbjct: 293 PPPAVIKKMEEL--GFEVTHVYGLTE------TYGPITVCEWKPEWDALPAEERARLKAR 344

Query: 362 --VGFILPNLEVKFINPETGKSLPSN--TPGELCVRSQCVMQGYYNNEEETARTIDKNGW 417
             V ++    EV  ++PET K +P +  T GE+ +R   VM+GYY N E T       GW
Sbjct: 345 QGVRYVG-LEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAF-AGGW 402

Query: 418 LHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEA 477
            H+GD+  +  DG I I DR K++I   G  ++  E+E +L  HP+V +AAVV+ PDE+ 
Sbjct: 403 FHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKW 462

Query: 478 GEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
           GE P A VV+ P A  +E++++++    +A +K  + + FV+ +PK+ +GKI + +L++
Sbjct: 463 GETPCAFVVLKPGASVTEEELIEYCREKLAHFKVPKTVEFVE-LPKTATGKIQKFVLRE 520

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  235 bits (601), Expect = 2e-70
 Identities = 152/554 (27%), Positives = 252/554 (45%), Gaps = 66/554 (11%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           T+ D        + D+ A V       YT+ Q+A      A+ L +LG++ G  V +  P
Sbjct: 19  TIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAP 78

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV--------SY-APIYE 147
           N AE+ +        G +    NP   ASEL+  +  +  + ++         Y A + E
Sbjct: 79  NCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQE 138

Query: 148 KVKGLG-----------LP----IIVLGEERIESAINWSELIEAAD--------KAGNNF 184
            + GL            LP    ++ L        + W EL    +        +   + 
Sbjct: 139 LLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQASL 198

Query: 185 SNDDDVKQTDLWIS------KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGL------ 232
             DD +     + S      KG  L+H N++ N            + +  +LGL      
Sbjct: 199 DRDDPINI--QYTSGTTGFPKGATLSHHNILNN---------GYFVAE--SLGLTEHDRL 245

Query: 233 ---IPFFHIYGITGICCATLRNKGKVVMMNR-FELRAFLDALITHEVTFAPIVPPIILSL 288
              +P +H +G+       +     +V  N  F+  A L A+     T    VP + ++ 
Sbjct: 246 CVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAE 305

Query: 289 VKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYG 348
           +  P    FDLS   LR  + A AP   +++     +    +VQ AYG+TE S ++L   
Sbjct: 306 LDHPQRGNFDLS--SLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTT 363

Query: 349 DPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEET 408
             A      +  +VG   P+LEVK ++P+ G ++P    GELC R   VM+GY+NN E T
Sbjct: 364 --AADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYSVMKGYWNNPEAT 420

Query: 409 ARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAA 468
           A +ID++GW+HTGD+  +D+ G + IV R K++I   G  + P E+E  L THP+V D  
Sbjct: 421 AESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQ 480

Query: 469 VVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGK 528
           V  +PDE+ GE   A V ++P    SE+++ +F  + +A +K  R   FVD  P + +GK
Sbjct: 481 VFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGK 540

Query: 529 IMRRILKDKMLEKM 542
           + +  +++  +E++
Sbjct: 541 VQKFRMREISIEEL 554

Length = 558

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  235 bits (601), Expect = 2e-70
 Identities = 164/573 (28%), Positives = 267/573 (46%), Gaps = 66/573 (11%)

Query: 20  EHIFRSRHPAVPVPE-------NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARD 72
           E+ ++ ++PA    E       N+     + Q  + +ADK AF     GK  TY ++ + 
Sbjct: 3   ENFWKDKYPAGIAAEINPDEYPNI--QAVLKQSCQRFADKPAFSNL--GKTLTYGELYKL 58

Query: 73  TRGFAKALRSL-GLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQV 131
           +  FA  L+    L+ G  + V LPNV +Y +   G M AG +    NP   A E++ Q 
Sbjct: 59  SGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQF 118

Query: 132 DAADAKLIVSYAPIYEKVKGLGLP------IIV---------LGEERIESAINWSE---- 172
           + + AK +V  A +    + + LP      +IV         L    I + +   +    
Sbjct: 119 NDSGAKALVCLANMAHLAEKV-LPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVP 177

Query: 173 ---------LIEAADKAGNNFSNDDDVKQTDLWI----------SKGVMLTHRNLVANL- 212
                      +A  K       + + +  D+ +          +KG MLTHRNLVAN+ 
Sbjct: 178 AYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANML 237

Query: 213 -CSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCAT-LRNKGKVVMMNRFELRAFLDAL 270
            C  L        G    +  +P +HIY  T  C A  L     +++ N  +L A +  L
Sbjct: 238 QCRALMGSNLNE-GCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKEL 296

Query: 271 ITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFE-KKFPGV 329
              + +    +  + ++L  +    + D S L+L    T +  +A  L ++   K+  G 
Sbjct: 297 GKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKL----TLSGGMALQLATAERWKEVTGC 352

Query: 330 QVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGE 389
            + E YG+TE S +        NPS   +  ++G  +P+   K I+ + G  LP    GE
Sbjct: 353 AICEGYGMTETSPVV-----SVNPSQAIQVGTIGIPVPSTLCKVIDDD-GNELPLGEVGE 406

Query: 390 LCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQV 449
           LCV+   VM+GY+   E T   +D +GWL TGDI  I +DG + IVDR K++I   GF V
Sbjct: 407 LCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNV 466

Query: 450 APAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATY 509
            P ELE +L   P V   A + +PDE++GE     VV+ P    +++ +M+ + +N+  Y
Sbjct: 467 YPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGY 526

Query: 510 KKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 542
           K  + + F D +P ++ GKI+RR L+D+ L+K 
Sbjct: 527 KVPKAVEFRDELPTTNVGKILRRELRDEELKKA 559

Length = 562

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  230 bits (588), Expect = 1e-69
 Identities = 135/487 (27%), Positives = 207/487 (42%), Gaps = 65/487 (13%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH 123
            TY ++       A AL  LG+R G VV   LPN  E+ +V L     G V    NP   
Sbjct: 2   LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAV---INPIVP 58

Query: 124 ---ASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKA 180
                EL   +  A A+++      +       +P                         
Sbjct: 59  IYRERELGFILRQARARVLFV-PDEFRGFDYAAMP------------------------- 92

Query: 181 GNNFSNDDDVKQTDLWIS------KGVMLTHRNLVANLCSTLFSVVPEMIG---QVTTLG 231
                  DDV    L+ S      KGVM TH  L+A + S       E +G       L 
Sbjct: 93  -------DDVALL-LYTSGTTGEPKGVMHTHNTLLAEVRS-----YVERLGLTPDDVVLM 139

Query: 232 LIPFFHIYG-ITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVK 290
             P  HI G + G+    L     VV+ +R++    L+ +  H VTF     P +  L+ 
Sbjct: 140 PSPLAHITGFLYGLELPLLLG-ATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLA 198

Query: 291 DPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDP 350
                  DL    LR  +   AP+  +L     +   G +V  AYG+TE   +T+   D 
Sbjct: 199 AADAAGPDLP--SLRVFLCGGAPVPRELARRAAEAL-GAKVVRAYGMTEVPLVTVGTPDD 255

Query: 351 ANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETAR 410
            +    +   + G  +P +EV+ ++ + G  +P    GEL VR   +  GY +  + T  
Sbjct: 256 PDDKRAA---TDGRPVPGVEVRIVDDD-GNDVPPGEEGELQVRGPQLFLGYLDPPDNTEA 311

Query: 411 TIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV 470
             D +GW  TGD+G +D DG + I  R K++I   G  ++  E+E +LL HP+V + AVV
Sbjct: 312 FTD-DGWFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVV 370

Query: 471 SLPDEEAGEIPAACVVMNPNAKESEDDIMDF-VASNVATYKKVRVLHFVDGIPKSHSGKI 529
           ++PDE  GE   A VV  P A  +  ++ +   A  +A  K    L  VD +P++ SGK+
Sbjct: 371 AMPDERLGERVCAVVVPAPGASLTLAELTEHLAAQGLAKQKWPERLEVVDALPRTPSGKV 430

Query: 530 MRRILKD 536
            +  L++
Sbjct: 431 QKFELRE 437

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  228 bits (584), Expect = 2e-69
 Identities = 114/344 (33%), Positives = 175/344 (50%), Gaps = 24/344 (6%)

Query: 198 SKGVMLTHRNLV--ANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV 255
            KGV+LTH  L+  A L + L  + P+    V    L P FHI        A L     +
Sbjct: 96  PKGVLLTHAQLLFAARLAARLLGLRPD---DVLLTPL-PLFHINAQAYSVYAALLVGATL 151

Query: 256 VMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPI-VDEFDLSKLQLRAVMTAAAPL 314
           V++ RF    F D +  H  T   ++  +   L+K P   D+ D     LR V    APL
Sbjct: 152 VLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRDH---PLRFVF--GAPL 206

Query: 315 APDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFI 374
              +  +FE++F GV++ E YG+TE     +  GDPA P       S G   P +EV+ +
Sbjct: 207 PAAIWPAFEERF-GVKLVEGYGMTETGVPIIAPGDPAPPG------SCGRPRPGVEVRIV 259

Query: 375 NPETGKSLPSNTPGELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGD 431
           + + G+ +P    GEL VR      + +GYY   E TA+   +NGW HTGD G  D+DG 
Sbjct: 260 DED-GREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTGDRGRRDEDGF 317

Query: 432 IFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA 491
           ++ VDR K+ I+ +G  ++  E+EA +L HP+V +AAVV++P E   +   A VV+ P  
Sbjct: 318 LYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELGEDEVKAVVVLRPGE 377

Query: 492 KESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
               + +++F    +  +   R + FVD +PK+ + KI +  L+
Sbjct: 378 TLDPEALLEFCRDRLPYFMVPRYIEFVDELPKTPTEKIQKAELR 421

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  229 bits (586), Expect = 4e-68
 Identities = 155/540 (28%), Positives = 248/540 (45%), Gaps = 45/540 (8%)

Query: 26  RHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGL 85
           R P  P  E   L +++   A     + A +    G   TYA++   +  FA  LR  G+
Sbjct: 24  REPEYPHGE-RPLTEYLRAWARERPQRPAII--FYGHVITYAELDELSDRFAALLRQRGV 80

Query: 86  RKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSY--- 142
             G  V V LPN  ++ IV  GI+  G V    +P     EL  +++ A A+++++    
Sbjct: 81  GAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQL 140

Query: 143 APIYEKVKG---------------------LGLPIIVLGEERI-ESAINWSELIEAADKA 180
           AP+ E+V+                      L LP  +         AI+    + A    
Sbjct: 141 APVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTAP 200

Query: 181 GNNFSND-DDVK-------QTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGL 232
                   D +         T +   KG   T R++V    +     V      V  L  
Sbjct: 201 VPLPPPALDALAALNYTGGTTGM--PKGCEHTQRDMVYTAAAAYAVAVVGGEDSVF-LSF 257

Query: 233 IPFFHIYG-ITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKD 291
           +P F I G   G+    L +   +V++ R++  AF+ A+  + VT   ++    + L+  
Sbjct: 258 LPEFWIAGENFGLL-FPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDH 316

Query: 292 PIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE-HSCITLTYGDP 350
           P   E+DLS L+   V++    L PD    +      V  + A+G+TE H+C T T G  
Sbjct: 317 PRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQ 376

Query: 351 ANP-SAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA 409
            +     S+   VG  +P  E K  + ETG+ LP    GE+ VR+  +++GY+N  E TA
Sbjct: 377 DDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATA 436

Query: 410 RTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV 469
             + ++GWLHTGDIG ID+ G +  + R KE++K  G  V P+E+EA+L  HP+V  +AV
Sbjct: 437 EAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAV 495

Query: 470 VSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKI 529
           V  PD + G++P A V + P A  +   +  +   N+A Y KV  +  VD +P + +GK+
Sbjct: 496 VGRPDPDKGQVPVAFVQLKPGADLTAAALQAWCRENMAVY-KVPEIRIVDALPMTATGKV 554

Length = 567

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  223 bits (570), Expect = 3e-66
 Identities = 155/525 (29%), Positives = 236/525 (44%), Gaps = 49/525 (9%)

Query: 36  VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVL 95
            T    ++   + Y D+ A V        TY Q+A     + +A  +LGL  G  V ++ 
Sbjct: 12  ATYGHLLVSALKRYPDRPALVL--GDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLS 69

Query: 96  PNVAEYGIVALGIMAAGGVFSGANPTA----HASELKKQVDAADAKLIVSYAPIYEKVKG 151
            N  E  +       AG   +  +P      HA  L+   DA  + LIV  AP  E+   
Sbjct: 70  LNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLE---DAGISTLIVDPAPFVER--A 124

Query: 152 LGLPIIVLGEERIES---AINWSELIEAADKAGNNFSNDDDVKQTDLWI---------SK 199
           L L   V   + + +     +  +L+ AA K G        +      +          K
Sbjct: 125 LALLARVPSLKHVLTLGPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPK 184

Query: 200 GVMLTHRNLV--ANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVM 257
           GVM THR++   A +    +   P        L   P  H  G   +   TL   G V++
Sbjct: 185 GVMGTHRSIATMAQIQLAEWEW-PA---DPRFLMCTPLSHAGGAFFL--PTLLRGGTVIV 238

Query: 258 MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPD 317
           + +F+    L A+    +T   +VP +I +L+  P +   DLS L+   V   A+P++P 
Sbjct: 239 LAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLET--VYYGASPMSPV 296

Query: 318 LLSSFEKKFPGVQVQEAYGLTE-HSCIT-LTYGD--PANPSAGSKKNSVGFILPNLEVKF 373
            L+   ++F  +  Q  YG TE    IT L   D  P +P    +  S G   P L V  
Sbjct: 297 RLAEAIERFGPIFAQ-YYGQTEAPMVITYLRKRDHDPDDPK---RLTSCGRPTPGLRVAL 352

Query: 374 INPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIF 433
           ++ + G+ +     GE+CVR   VM GY+N  EETA    ++GWLHTGD+   D+DG  +
Sbjct: 353 LDED-GREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYY 410

Query: 434 IVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKE 493
           IVDR K++I   GF V P E+E +L  HP+V   AV+ +PDE+ GE   A VV+ P A  
Sbjct: 411 IVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAV 470

Query: 494 SEDDIMDFVAS---NVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
              ++   V     +V   K+V    FVD +P +  GK  ++ L+
Sbjct: 471 DAAELQAHVKERKGSVHAPKQVD---FVDSLPLTALGKPDKKALR 512

Length = 524

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  215 bits (551), Expect = 2e-64
 Identities = 101/345 (29%), Positives = 164/345 (47%), Gaps = 28/345 (8%)

Query: 198 SKGVMLTHRNLVANLCSTL-----FSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNK 252
            KGV+LTH NL AN    L     ++        V    L P  H++G+       L   
Sbjct: 103 PKGVVLTHGNLAAN-ARALVEAWRWTA-----SDVLLHAL-PLHHVHGLFNALHCPLWAG 155

Query: 253 GKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKL----QLRAVM 308
             V  + RF+ +      +   +T    VP I   L++     EFD +       LR  +
Sbjct: 156 ASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHY---EFDDAAAAAARNLRLFV 212

Query: 309 TAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKK-NSVGFILP 367
           + +A L   +L  +E++  G  + E YG+TE           +NP  G ++  +VG  LP
Sbjct: 213 SGSAALPVPVLERWEERT-GHTLLERYGMTETGMAL------SNPLDGERRPGTVGLPLP 265

Query: 368 NLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYID 427
            +EV+ ++ + G+ L +   GE+ VR   V   Y+N  E TA    ++GW  TGD+G +D
Sbjct: 266 GVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVD 325

Query: 428 DDGDIFIVDRIKEL-IKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV 486
           +DG   I+ R  +  IK  G++V+  E+E  LL HP V + AV+ +PD + GE   A VV
Sbjct: 326 EDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVV 385

Query: 487 MNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMR 531
               A  +  ++  +    +A YK  + +  VD +P++  GK+ +
Sbjct: 386 PEAGAALTLAELRAWAREKLAPYKIPKRVIVVDELPRNAMGKVQK 430

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  212 bits (541), Expect = 4e-63
 Identities = 132/483 (27%), Positives = 218/483 (45%), Gaps = 87/483 (18%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH 123
            T+ ++ +     A+ L +LG+R+G  V ++  N  E+ ++ L ++  G V    NP   
Sbjct: 2   LTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRLP 61

Query: 124 ASELKKQVDAADAKLIVSYAPIYEKVKGL-------GLPIIVLGEERIESAINWSELIEA 176
             EL++Q+            P  ++   +       G P  V+          W   + +
Sbjct: 62  QEELQQQLADL--------QPDLDRPATIIFTSGSTGKPKAVV--------HTWGNHLAS 105

Query: 177 ADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFF 236
           A  +  N      +   D W               L S                  +P F
Sbjct: 106 ARGSAENLG----LTPDDNW---------------LLS------------------LPLF 128

Query: 237 HIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDE 296
           H+ G+  I   +L   G +V+ ++F+  A  +AL  H VT   +VP  +  L     ++ 
Sbjct: 129 HVSGL-AIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRL-----LES 182

Query: 297 FDLSKL-QLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHS--CITLTYGDPANP 353
                L  LRAV+   AP+ P LL    ++  G+ +   YG+TE +    TL   D    
Sbjct: 183 LGARWLSSLRAVLLGGAPIPPSLLEQARQR--GIPLYPTYGMTETASQVATLKPDDFLA- 239

Query: 354 SAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTID 413
               K  SVG  LP  E++ +NP+          GE+ VR   +  GY      T    D
Sbjct: 240 ----KLGSVGKPLPGRELRIVNPQD---------GEILVRGPSLFLGYLPQGGLTPPL-D 285

Query: 414 KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLP 473
           ++GW HTGD+GY+D +G ++++ R  +LI   G  + P E+EA+LL HP+VE+AAVV +P
Sbjct: 286 EDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVP 345

Query: 474 DEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRI 533
           D+E G+ P A VV N +   S +++  F+A  +A YK+ +  + +  +P++ SGKI R  
Sbjct: 346 DDEWGQRPVAFVVPN-DDPVSVEELQAFLADKLAKYKRPKRWYPLPELPRNASGKIDRAA 404

Query: 534 LKD 536
           L+ 
Sbjct: 405 LRQ 407

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  212 bits (542), Expect = 1e-62
 Identities = 144/534 (26%), Positives = 239/534 (44%), Gaps = 90/534 (16%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           T+P+++ Q A L  D+ A       K  T+ ++       A  L +LG++KG  V +++ 
Sbjct: 3   TMPNWLKQRAFLTPDRTAIEFE--EKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMK 60

Query: 97  NVAE--YGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGL 154
           N  E    I AL  + A  V      +    EL  Q+D A+ K ++     +E       
Sbjct: 61  NGMEMILVIHALQQLGAVAVLLNTRLSRE--ELLWQLDDAEVKCLI-TDDDFEA------ 111

Query: 155 PIIVLGEERIESAINWSELIEAADKAGN--NFSNDDDVKQTDLWIS------KGVMLTHR 206
                 +     ++ ++EL+    +        + D+V  T ++ S      KGV+ T+ 
Sbjct: 112 ------KLIPGISVKFAELMNGPKEEAEIQEEFDLDEV-ATIMYTSGTTGKPKGVIQTYG 164

Query: 207 NLVANLCSTLFSVVPEMIGQVTTLGL---------IPFFHI-----------YGITGICC 246
           N         +S V    G    LGL         +P FHI           YG+     
Sbjct: 165 N-------HWWSAV----GSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMR---- 209

Query: 247 ATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRA 306
                   VV++ +F+       L T  VT   +V  ++  L++      +  S    R 
Sbjct: 210 --------VVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEGTYPSS---FRC 258

Query: 307 VMTAAAPLAPDLL-SSFEKKFPGVQVQEAYGLTEHSC--ITLTYGDPANPSAGSKKNSVG 363
           ++    P    LL    EK  P  Q   +YG+TE +   +TL+  D        K  S G
Sbjct: 259 MLLGGGPAPKPLLEQCKEKGIPVYQ---SYGMTETASQIVTLSPEDALT-----KLGSAG 310

Query: 364 FILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDI 423
             L   E+K    + G  +P    GE+ V+   V +GY N E+ T  T  ++GW  TGDI
Sbjct: 311 KPLFPCELKIE--KDGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDI 367

Query: 424 GYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAA 483
           GY+D++G ++++DR  +LI   G  + PAE+E +LL+HP V +A VV +PD++ G++P A
Sbjct: 368 GYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVA 427

Query: 484 CVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
            VV +     +E+++  F    +A YK  +  +FV+ +P++ SGK++R  LK  
Sbjct: 428 FVVKSGEV--TEEELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQL 479

Length = 483

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  214 bits (548), Expect = 3e-62
 Identities = 135/557 (24%), Positives = 216/557 (38%), Gaps = 106/557 (19%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSG--KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVV 94
           TLP  + +  +   D VA +    G  +A TY ++    R  A  L SLG+  G  V + 
Sbjct: 17  TLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIF 76

Query: 95  LPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAK-LIVSYAPIYEKVKGLG 153
             N  E+ I  L I+A G V      T+   +L   ++ +++K + V    + + V  + 
Sbjct: 77  AANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVL 136

Query: 154 -LPIIVLGEERIESAINWSELIEAADKAGNNFSNDD----DVKQTDLWIS---------- 198
                V+    I   +  +   +A                D    +  I+          
Sbjct: 137 EDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATI 196

Query: 199 ----------KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCAT 248
                     KGVMLTHRNL+A + + +  V+P +      L  +P  HI+         
Sbjct: 197 IYTSGTTGTPKGVMLTHRNLLAQV-AGIDEVLPPIGPGDRVLSFLPLAHIFERAFE--GG 253

Query: 249 LRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFD---------- 298
           L   G V ++ + + R  L+ L     T   I  P +   V   I+++            
Sbjct: 254 LALYGGVTVLFKEDPRTLLEDLKEVRPTVM-IGVPRVWEKVYKGIMEKVAKAPAVRRKLF 312

Query: 299 -------------------------------LSKL------QLRAVMTAAAPLAPDLLSS 321
                                            K+      ++R  ++  APL+P+LL  
Sbjct: 313 RWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHF 372

Query: 322 FEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKS 381
           F     G+ + E YGLTE S +  +   P          +VG  LP +EVK I  +    
Sbjct: 373 FRSL--GIPILEGYGLTETSAVV-SVNPPDRF----VLGTVGKPLPGIEVK-IADD---- 420

Query: 382 LPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKEL 441
                 GE+ VR   VM+GYY N E TA    ++GW  TGD+G +D+DG + I  R KEL
Sbjct: 421 ------GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKEL 474

Query: 442 IKY-KGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA----KESED 496
           IK   G  +AP  +E+ L   P +E   VV     +  +   A +V + +A     ES +
Sbjct: 475 IKLSNGKNIAPEPIESKLAKSPLIEQICVV----GDDKKFLVALIVPDFDALEKWAESLN 530

Query: 497 DIMDFVASNVATYKKVR 513
            ++      +A   K+ 
Sbjct: 531 KVISASREELARDPKLL 547

Length = 613

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  209 bits (535), Expect = 4e-61
 Identities = 152/530 (28%), Positives = 249/530 (46%), Gaps = 56/530 (10%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           T+ D + + A  Y DK A V     +++TYA++       A AL  LGL+KG  V  +  
Sbjct: 12  TIGDILRRSARRYPDKTALVFG--DRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGH 69

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYE--------- 147
           N   Y ++ L    AG V    N      EL   +D + A+  +    +           
Sbjct: 70  NSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALL 129

Query: 148 KVKGLGLPIIVLGEERIESAINWSELIEAADKA-GNNFSNDDDVKQTDLWIS------KG 200
            V  L L +++ G E     +++++  EA   A  +    DDD+ Q  L+ S      KG
Sbjct: 130 PVDTLILSLVLGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQI-LYTSGTESLPKG 188

Query: 201 VMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRN--------K 252
            MLTHR L+A   S +  V  +M      L  +P +H        CA L           
Sbjct: 189 AMLTHRALIAEYVSCI--VAGDMSADDIPLHALPLYH--------CAQLDVFLGPYLYVG 238

Query: 253 GKVVMMNRFELRAFLDALITHEVT--FAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTA 310
              V+++  +    L  +    +T  FAP  P + +SL++ P  D  DLS   LR     
Sbjct: 239 ATNVILDAPDPELILRTIEAERITSFFAP--PTVWISLLRHPDFDTRDLS--SLRKGYYG 294

Query: 311 AAPLAPDLLSSFEKKFPGVQVQEAYGLTE----HSCITLTYGDPANPSAGSKKNSVGFIL 366
           A+ +  ++L    ++ PG++    YG TE     +   L   +        +  S G  +
Sbjct: 295 ASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLAT--VLGPEEHL-----RRPGSAGRPV 347

Query: 367 PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYI 426
            N+E + ++ + G  +     GE+  RS  +M GY+++ E+TA    + GW H+GD+G +
Sbjct: 348 LNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVM 405

Query: 427 DDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV 486
           D++G I +VDR K++IK  G  VA  E+E  L THP+V + AV+ LPD +  E   A VV
Sbjct: 406 DEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVV 465

Query: 487 MNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
               A  +ED+++    + +A +K  + + FVD +P++ SGKI++R L++
Sbjct: 466 PKAGATVTEDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRE 515

Length = 523

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  207 bits (530), Expect = 2e-59
 Identities = 149/515 (28%), Positives = 223/515 (43%), Gaps = 65/515 (12%)

Query: 65  TYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHA 124
           TYA++  D    A  L SLG+  G VV  +LPN+ E      G  AAG      NP    
Sbjct: 60  TYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAGIANP-INPLLEP 118

Query: 125 SELKKQVDAADAKLIVSYAP-----IYEKVKGL------GLPIIVLGEERIESAINWSEL 173
            ++ + + AA AK++V+  P     I++KV  +         ++ +   R         +
Sbjct: 119 EQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAV 178

Query: 174 IEAADKAGNNFSNDDDV---KQTDLWIS----------------------KGVMLTHRNL 208
                KA     + D     +  D   S                      K    TH N 
Sbjct: 179 PLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNE 238

Query: 209 VAN--LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN----RFE 262
           VAN  L + L  + P   G     GL P FH+  +     A L     VV+      R  
Sbjct: 239 VANAWLGALLLGLGP---GDTVFCGL-PLFHVNALLVTGLAPLARGAHVVLATPQGYRGP 294

Query: 263 --LRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLS 320
             +  F   +  + + F   VP +  +L++ P VD  D+S   LR  +  AAPL  ++  
Sbjct: 295 GVIANFWKIVERYRINFLSGVPTVYAALLQVP-VDGHDIS--SLRYALCGAAPLPVEVFR 351

Query: 321 SFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKK-NSVGFILPNLEVKFIN-PET 378
            FE    GV++ E YGLTE +C++       NP  G ++  SVG  LP   V+ +   + 
Sbjct: 352 RFEAA-TGVRIVEGYGLTEATCVSSV-----NPPDGERRIGSVGLRLPYQRVRVVILDDA 405

Query: 379 GKSL---PSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIV 435
           G+ L     +  G LC+    V  GY          ++  GWL+TGD+G ID DG  ++ 
Sbjct: 406 GRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLED-GWLNTGDLGRIDADGYFWLT 464

Query: 436 DRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE 495
            R K+LI   G  + PA +E  LL HP+V  AA V  PD  AGE+P A V + P A  +E
Sbjct: 465 GRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATE 524

Query: 496 DDIMDFVASNVATYKKV-RVLHFVDGIPKSHSGKI 529
            +++ F   ++A    V + +  +D +PK+  GKI
Sbjct: 525 AELLAFARDHIAERAAVPKHVRILDALPKTAVGKI 559

Length = 632

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  205 bits (523), Expect = 4e-59
 Identities = 161/535 (30%), Positives = 250/535 (46%), Gaps = 63/535 (11%)

Query: 49  YADKVAFVEAVSGKAYTYAQVARDTRGFAK-ALRSLGLRKGQVVIVVLPNVAEYGIVALG 107
           +AD+ A+     GK  TY +  +    FA   L  L L+KG  V +++PN  +Y I   G
Sbjct: 38  FADRPAYHSF--GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFG 95

Query: 108 IMAAGGVFSGANPTAHASELKKQ-VDAADAKLIV------------SYAPIYEKVKG--- 151
           ++ AG      NP     ELK Q +D+  + L+V            +  P+ + +     
Sbjct: 96  VLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLG 155

Query: 152 --LGLPIIVL------------GEERIESAINWSELIEAADK---AGNNFSNDD----DV 190
             LG P   L             E RI  AI + E +    K          DD      
Sbjct: 156 DMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQY 215

Query: 191 KQTDLWISKGVMLTHRNLVANL--CSTLFSVVPEMI-GQVTTLGLIPFFHIYGITGICCA 247
                 ++KG MLTHRNLVAN+       +   ++  G    +  +P +HI+ +T     
Sbjct: 216 TGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLV 275

Query: 248 TLRNKG-KVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRA 306
            ++  G   ++ N  ++  F+  L     T    V  +   L+  P  D+ D S L+   
Sbjct: 276 FMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLK--- 332

Query: 307 VMTAAAPLAPD-LLSSFEKKFPGVQVQEAYGLTEHS---CITLTYGDPANPSAGSKKN-S 361
            MT    +A    ++   K+  G+ + EAYGLTE S   CI        NP    + N S
Sbjct: 333 -MTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACI--------NPLTLKEYNGS 383

Query: 362 VGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTG 421
           +G  +P+ +   I  + G  L     GELC++   VM+GY+   EETA+ +D +GWLHTG
Sbjct: 384 IGLPIPSTDA-CIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTG 442

Query: 422 DIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIP 481
           DI  +D+ G ++IVDR K++I   GF V P E+E ++   P V + A V +PDE++GEI 
Sbjct: 443 DIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIV 502

Query: 482 AACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
              +V    A  +E D+     +N+  YK+ R++ F   +PK++ GKI+RR L+D
Sbjct: 503 KVVIVKKDPALTAE-DVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRD 556

Length = 560

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  192 bits (489), Expect = 2e-55
 Identities = 132/493 (26%), Positives = 215/493 (43%), Gaps = 80/493 (16%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH 123
           YT+ Q+   +   A ALR LG+ +G  V V LP   E  I  L +   G V    +    
Sbjct: 7   YTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFG 66

Query: 124 ASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNN 183
              ++ ++  + A+++V+                       + AI    LI  +   G  
Sbjct: 67  PDAVEHRLRDSGARVLVTDGSD-------------------DPAI----LIYTSGTTGP- 102

Query: 184 FSNDDDVKQTDLWISKGVMLTHRNLVANL--CSTLFSVVPEM------------IGQVTT 229
                          KG +  HR L+ +L      F + P              IG +  
Sbjct: 103 --------------PKGALHGHRVLLGHLPGVELYFELAPRPGDVFWTPADWAWIGGLLD 148

Query: 230 LGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLV 289
           + L+P  + +G+  +             M RF+       +  + VT A  +PP  L ++
Sbjct: 149 V-LLPALY-FGVPVVAYR----------MQRFDPERAFALMRRYGVTNA-FLPPTALKMM 195

Query: 290 KDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGD 349
           +  +  E     L+LRAV +    L  +LL     +  G+ V E YG TE + +      
Sbjct: 196 RR-VGSERARYDLRLRAVASGGESLGEELLEWARDEL-GLTVNEFYGQTEANLVVGN--- 250

Query: 350 PANPSAGSKK-NSVGFILPNLEVKFINPETGKSLPSNTPGELCVRS--QCVMQGYYNNEE 406
               + G  +  S+G  +P  EV  ++   G+ +P    GE+ V+     +  GY+NN E
Sbjct: 251 --CAALGPARPGSMGKPVPGHEVAVVDDA-GRPVPPGEVGEIAVKRPDPVMFLGYWNNPE 307

Query: 407 ETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVED 466
            TA       WL TGD+G  D DG ++   R  ++IK  G+++ PAE+E  LL HP+V +
Sbjct: 308 ATAAKF-AGDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLE 366

Query: 467 AAVVSLPDEEAGEIPAACVVMNPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPK 523
           AAVV +PD E GEI  A VV+    + S++   ++ + V S +A ++  R + FVD +P 
Sbjct: 367 AAVVGVPDPERGEIVKAFVVLAEGVEPSDELATELQELVKSRLAAHEYPREIEFVDELPM 426

Query: 524 SHSGKIMRRILKD 536
           + +GKI RR L+ 
Sbjct: 427 TTTGKIRRRELRR 439

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  192 bits (490), Expect = 5e-55
 Identities = 126/510 (24%), Positives = 224/510 (43%), Gaps = 43/510 (8%)

Query: 46  AELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALR-SLGLRKGQVVIVVLPNVAEYGIV 104
           A L+ D++A +     +  TY Q+       A  L   L ++KG+ + ++  N  EY ++
Sbjct: 12  AYLHPDRIAII--TEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVL 69

Query: 105 ALGIMAAGGVFSGANPTAHASELKKQV-DAADAKLIVS--YAPIYEKVKGLGLPIIVLGE 161
              I     +    N     +EL  Q+ D+    L V   +  +   ++       V   
Sbjct: 70  LFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQK------VSYV 123

Query: 162 ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWI----------SKGVMLTHRNLVAN 211
           +R+ S  +  E+ +          N  +  ++  +I           KG +LT  N+  N
Sbjct: 124 QRVISITSLKEIEDR------KIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWN 177

Query: 212 LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI 271
             +  F++  ++     ++ L+P FHI GI      TL   G +++  +FE    L  + 
Sbjct: 178 ALNNTFAI--DLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIE 235

Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQV 331
            H+VT    VP I  +L+     +  +L    +R      AP   +L+  F  +  G   
Sbjct: 236 KHKVTVVMGVPTIHQALINCSKFETTNLQ--SVRWFYNGGAPCPEELMREFIDR--GFLF 291

Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELC 391
            + +G+TE S         +   A  K  S+G  +   + + I+    K +     GEL 
Sbjct: 292 GQGFGMTETSPTVFML---SEEDARRKVGSIGKPVLFCDYELIDENKNK-VEVGEVGELL 347

Query: 392 VRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAP 451
           +R   VM+ Y+N  + T  TI ++GWL TGD+  +D+DG ++IV R KE+I   G  + P
Sbjct: 348 IRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYP 406

Query: 452 AELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKK 511
            E+E ++     V + AVV     + GEIP A +V   ++   E D+++     +A YK 
Sbjct: 407 LEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKI 466

Query: 512 VRVLHFVDGIPKSHSGKIMR----RILKDK 537
            + + F+  +PK+ +GKI +      LK +
Sbjct: 467 PKEIVFLKELPKNATGKIQKAQLVNQLKSR 496

Length = 496

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  194 bits (494), Expect = 5e-55
 Identities = 117/360 (32%), Positives = 185/360 (51%), Gaps = 32/360 (8%)

Query: 197 ISKGVMLTHRNLVANLCSTLFSVVPEMIGQ----VTTLGLIPFFHIYGITGICCATLRNK 252
           ++KG MLTHRN++ANL     +  P +       VT L   P +HI+ +T  C   +   
Sbjct: 220 VAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTAL---PLYHIFALTVNCLLFIELG 276

Query: 253 GK-VVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLR-----A 306
           G+ +++ N  ++  F+  L  +  T    V  +  +L+ +    E D S L+L      A
Sbjct: 277 GQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMA 336

Query: 307 VMTAAAPLAPDLLSSFEK--KFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGF 364
           V  A A          E+  K  G  + E YGLTE  C  L   +P +    S   S+G 
Sbjct: 337 VQQAVA----------ERWVKLTGQYLLEGYGLTE--CSPLVSVNPYDLDYYS--GSIGL 382

Query: 365 ILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIG 424
            +P+ E+K ++ + G  +P   PGEL V+   VM GY+   E T   I K+GWL TGDI 
Sbjct: 383 PVPSTEIKLVDDD-GNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIA 440

Query: 425 YIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAAC 484
            +D++G + IVDR K++I   GF V P E+E +++ HP V + A V +P E +GE     
Sbjct: 441 VMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIF 500

Query: 485 VVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK 544
           VV   +   +E++++     ++  YK  +++ F D +PKS+ GKI+RR L+D+   K+  
Sbjct: 501 VVKK-DPSLTEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAKVDN 559

Length = 560

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  192 bits (490), Expect = 6e-55
 Identities = 137/521 (26%), Positives = 232/521 (44%), Gaps = 55/521 (10%)

Query: 40  DFVLQ-DAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNV 98
            F+ +   E   DK+A        + TY ++  +   +  ALR LG+ +   V+++L + 
Sbjct: 8   YFLDRHLNEGRGDKIALYYDD--GSLTYGELQEEVNRWGNALRELGIERENRVLLILLDT 65

Query: 99  AEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL--GLP- 155
            E+     G +  G V    N      + +  ++ + A+++V    ++E +K      P 
Sbjct: 66  PEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDPH 125

Query: 156 ---IIVLGEERIESAINWSELI-EAADKAGNNFSNDDDVKQTDLWI--------SKGVML 203
              +IV+G      A+++++LI  AA++     ++ DD+     W+         KGV+ 
Sbjct: 126 LRHVIVVGGA-GPGALSYAQLIATAAEELEAAATSADDMA---FWLYSSGSTGRPKGVVH 181

Query: 204 THRNLVANLCSTLFSVVPEMIGQVTTLGLIP---------FFHIYGITGICCATLRNKGK 254
            H +++         V  E   +   LG+            F  YG+       L     
Sbjct: 182 LHHDML---------VTAEAYAK-NVLGITEDDVVFSAAKLFFAYGLGNGLYFPLSVGAT 231

Query: 255 VVMM-NRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAP 313
            V+M  R    A    +  ++ T    VP +  +++  P   E DLS L  R  ++A   
Sbjct: 232 TVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAPEKPERDLSSL--RLCVSAGEA 289

Query: 314 LAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKF 373
           L  ++   +++ F G+++ +  G TE   I L+     N     K  + G  +P  EVK 
Sbjct: 290 LPAEIGYRWKELF-GLEILDGIGSTEMLHIFLS-----NRPGAVKYGTSGKPVPGYEVKL 343

Query: 374 INPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIF 433
           ++ + G+ +     GEL VR      GY+N  E+T  T     W  TGD  Y D+DG  +
Sbjct: 344 VDED-GEEVADGEIGELWVRGDSSAAGYWNRREKTRETF-VGEWTRTGDKYYRDEDGYYW 401

Query: 434 IVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK- 492
              R  +++K  G  V+P E+E  LL HP+V +AAVV   DE+    P A VV+    + 
Sbjct: 402 YCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKAFVVLKDGYQP 461

Query: 493 --ESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMR 531
             E E ++ DFV   +A YK  R + FVD +PK+ +GKI R
Sbjct: 462 SPELETELKDFVKDKLAPYKYPRWIEFVDELPKTATGKIQR 502

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  188 bits (479), Expect = 8e-55
 Identities = 111/349 (31%), Positives = 166/349 (47%), Gaps = 32/349 (9%)

Query: 199 KGVMLTHRNLVAN--LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVV 256
           K    +HRN VAN  + + L  + P   G V   GL P FH+ G      A L     VV
Sbjct: 18  KLARHSHRNEVANAWMAALLSGLGP---GDVLLNGL-PLFHVGGAIVTGLAPLARGATVV 73

Query: 257 MMNRFELR--AFLDALIT----HEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTA 310
           +      R  A +         + VT    VP ++ +L++ P+ D  D+S   LR  +T 
Sbjct: 74  LPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGDA-DIS--SLRYALTG 130

Query: 311 AAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLE 370
           AAPL  ++   FE    GV V E YG+TE + ++    +P       +  SVG  LP   
Sbjct: 131 AAPLPVEVARRFEAV-TGVPVVEGYGMTEGTGVSAI--NPRGGPR--RPGSVGLRLPYTR 185

Query: 371 VKFINPETGKSLPS----NTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYI 426
           V+    + G +L         G L +R   V  GY N+       ++ +GWL+TGD+G I
Sbjct: 186 VRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLE-DGWLNTGDLGRI 244

Query: 427 DDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV 486
           D DG +++  R K+LI   G  + P  +E  LL HP+V  AA V  PD  AGE+P A V 
Sbjct: 245 DADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQ 304

Query: 487 MNPNAKESEDDIMDFVASNV----ATYKKVRVLHFVDGIPKSHSGKIMR 531
           + P A  +E +++ FV + +    A  K + +   +D +P +  GKI +
Sbjct: 305 LKPGATVTEGELLAFVKARIPERAAVPKAIYI---IDALPLTAVGKIFK 350

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  188 bits (480), Expect = 7e-54
 Identities = 108/376 (28%), Positives = 156/376 (41%), Gaps = 67/376 (17%)

Query: 199 KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM 258
           KGVMLTHRNL+A   + L  V+P +      L  +P  H++         L +  +V   
Sbjct: 104 KGVMLTHRNLLAQ-AAALLEVIP-LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVN-- 159

Query: 259 NRF--ELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDE-----------FDLSKL--Q 303
             F       L+ L     T      P +   +   I  +           F  +    +
Sbjct: 160 --FAESPETLLEDLREVRPTVF-FAVPRVWEKIYAGIEAKVAAAGPLKRKLFRWALGGGR 216

Query: 304 LRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVG 363
           LR  ++  APL P++L  F     G+ + E YGLTE S +  T   P +   G+    VG
Sbjct: 217 LRFAVSGGAPLPPEVLEFFRAL--GIPILEGYGLTETSGVA-TVNRPGDIRIGT----VG 269

Query: 364 FILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDI 423
             LP +EV+ I  +          GE+ VR   VM+GYY N E TA  +D++GWLHTGDI
Sbjct: 270 KPLPGVEVR-IAED----------GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDI 318

Query: 424 GYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVS----------L 472
           G +D+DG + I DR K+LI    G  +AP  +E  L   P +  A VV           +
Sbjct: 319 GRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVGDDRPYLTALIV 378

Query: 473 PDEEAGE-------IPAACVVMNPNAKESEDDIMDFVA------SNVATYKKVRVLH--- 516
            D EA E       +P           E    I   V       + V   KK  +L    
Sbjct: 379 LDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEVEEANARLARVEQIKKFVLLPKEF 438

Query: 517 FVDGIPKSHSGKIMRR 532
            ++    + + K+ RR
Sbjct: 439 SIEDGELTPTMKLRRR 454

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  190 bits (484), Expect = 1e-53
 Identities = 116/352 (32%), Positives = 182/352 (51%), Gaps = 27/352 (7%)

Query: 197 ISKGVMLTHRNLVANLC------STLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLR 250
           +SKG  L HRN+VAN+          F   P    Q+  +  +P +HI+ +T      +R
Sbjct: 218 VSKGATLLHRNIVANVLQMEAWLQPAFEKKPR-PDQLNFVCALPLYHIFALTVCGLLGMR 276

Query: 251 NKGKVVMM-NRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLR--AV 307
             G+ +++ N  ++  F+  L  ++V   P V  +  +L+ +P  D+ D SKL +     
Sbjct: 277 TGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGG 336

Query: 308 MTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHS-CITLTYGDPANP-SAGSKKNSVGFI 365
           M    P+A   L     +  G  + E YGL+E S   T       NP  A     ++G  
Sbjct: 337 MAVQRPVAERWL-----EMTGCPITEGYGLSETSPVAT------CNPVDATEFSGTIGLP 385

Query: 366 LPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGY 425
           LP+ EV  I  + G  LP   PGE+C+R   VM GY+N  +ETA+ +  +G+  TGD+G 
Sbjct: 386 LPSTEVS-IRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGV 444

Query: 426 IDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACV 485
           +D+ G   IVDR K++I   GF V P E+E ++ +HP V + A V +PDE +GE     V
Sbjct: 445 MDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFV 504

Query: 486 V-MNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
           V  +P    +E+D+  F    +  YK+ + + F   +PK++ GKI+RR L+D
Sbjct: 505 VKKDPAL--TEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRD 554

Length = 557

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  186 bits (474), Expect = 2e-52
 Identities = 135/508 (26%), Positives = 233/508 (45%), Gaps = 29/508 (5%)

Query: 46  AELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
           A +  D  A      G   T+ ++       A AL   G+  G  V++++ N  E+    
Sbjct: 27  ALMQPDAPAL--RFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESV 84

Query: 106 LGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV---SYAPIYEKVK----GLGLPIIV 158
           L     G +    N      E+   V    A ++V   + AP+   V+     L   ++V
Sbjct: 85  LAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLST-VVV 143

Query: 159 LGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWIS------KGVMLTHRNLVANL 212
            G    +S + + +L+  A  A       +D     ++ S      KG +LTH NL    
Sbjct: 144 AGGSSDDSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQA 203

Query: 213 CSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVM-MNRFELRAFLDALI 271
            + L +   ++   V  +G +P FHI GI  +    L     V+  +  F+    LD L 
Sbjct: 204 MTCLRTNGADINSDVGFVG-VPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLE 262

Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQV 331
             +VT   +VP    ++  +      DL+   LR +   AAP +  LL      FP  Q+
Sbjct: 263 AEKVTGIFLVPAQWQAVCAEQQARPRDLA---LRVLSWGAAPASDTLLRQMAATFPEAQI 319

Query: 332 QEAYGLTEHSCIT-LTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGEL 390
             A+G TE S +T +  G+     A  K  SVG ++P +  + ++ E    +P    GE+
Sbjct: 320 LAAFGQTEMSPVTCMLLGE----DAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEI 374

Query: 391 CVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVA 450
             R+  +M GY+NN E TA      GW H+GD+   D++G +++VDR K++I   G  + 
Sbjct: 375 VYRAPTLMSGYWNNPEATAEAFA-GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIY 433

Query: 451 PAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE-DDIMDFVASNVATY 509
            AE+E +L +HP + + AV+   DE+ GE+P A   +  +      +D+ +F+   +A Y
Sbjct: 434 CAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARY 493

Query: 510 KKVRVLHFVDGIPKSHSGKIMRRILKDK 537
           K  + L  VD +P++ +GK+++  L+++
Sbjct: 494 KHPKALEIVDALPRNPAGKVLKTELRER 521

Length = 542

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  184 bits (469), Expect = 7e-52
 Identities = 145/476 (30%), Positives = 211/476 (44%), Gaps = 79/476 (16%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH 123
           YT+AQVA   R  A AL+SLGL  G  + ++  N AE+ I  L I  AG V     PT  
Sbjct: 7   YTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLT 66

Query: 124 ASELKKQVDAADAKLI-VSYAPIYEKVKGL---GLPIIVL-GEERIESAINWSELIEA-A 177
           A  ++  ++ +DAK + V     ++ +K     GLP I+L     ++    W +L+ A  
Sbjct: 67  AETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDHYKWDDLLAATE 126

Query: 178 DKAGNNFSNDDDVKQTDLWIS------KGVMLTHRNLVANLCSTLFSVVPEMIGQVTT-- 229
              G      +D+  T ++ S      KGVML+                 E+IG      
Sbjct: 127 PLQGRPLPEPEDL-ATIVYTSGTTGQPKGVMLSFGAFAFAA-----QGTIEIIGLTPNDR 180

Query: 230 -LGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVP------ 282
            L  +P  HI     +   +L +  +V  +    L  F   L     T    VP      
Sbjct: 181 LLSYLPLAHIAERVIVEGGSLYSGAEVFFVE--SLDTFAADLQRARPTVFFSVPRLWTKF 238

Query: 283 -------------------PIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFE 323
                              PI+ SLVK  I+    L   Q R   + AAP+ P L++ + 
Sbjct: 239 QQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLD--QARLAGSGAAPMPPALIAWYR 296

Query: 324 KKFPGVQVQEAYGLTEH-SCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSL 382
           K   G+ + E YG+TE+ +  TL Y          +  +VG  +P +E+K I+ +     
Sbjct: 297 KL--GLPICEGYGMTENFAYSTLNYPGD------RRIGTVGKPIPGVELK-ISED----- 342

Query: 383 PSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELI 442
                GE+ +RS  +M GYY + E+TA    ++GWLHTGD G ID+DG + I  R+KEL 
Sbjct: 343 -----GEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELF 397

Query: 443 KY-KGFQVAPAELEAILLTHPSVEDAAVV--SLPDEEAGEIPAACVVMNPNAKESE 495
           K  KG  VAPA +E +L  +P VE   VV   LP       P A VV++  A   E
Sbjct: 398 KTSKGKYVAPAPIENLLSANPHVEQVCVVGSGLPQ------PVALVVLSEAADPLE 447

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  183 bits (467), Expect = 1e-51
 Identities = 140/527 (26%), Positives = 240/527 (45%), Gaps = 57/527 (10%)

Query: 36  VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVL 95
             L   +   A    D+ A V     +  +YA+  +     A  L + G+ +G VV +++
Sbjct: 2   FNLSASIAFHARRTPDRAALV--YRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLM 59

Query: 96  PNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLP 155
            N A +  +A      G VF   N    A E+   +  A AKL++     ++ +  L  P
Sbjct: 60  KNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLL-VDEEFDAIVALETP 118

Query: 156 IIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWIS------KGVMLTHRNLV 209
            IV+       +   ++                D+ +  ++ S      KGVM ++ NL 
Sbjct: 119 KIVIDAAAQADSRRLAQGGLEIPPQ--AAVAPTDLVRL-MYTSGTTDRPKGVMHSYGNLH 175

Query: 210 ANLCSTLFSVVPEMIGQVTTLGLI---------PFFHI--YGITGICCATLRNKGKVVMM 258
                       + I  V  LGL          P +H+  + + GI  A L   G + + 
Sbjct: 176 W-----------KSIDHVIALGLTASERLLVVGPLYHVGAFDLPGI--AVLWVGGTLRIH 222

Query: 259 NRFELRAFLDALITHEVT---FAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLA 315
             F+  A L A+  H +T    AP++   +L++   P  D FDL  L   A         
Sbjct: 223 REFDPEAVLAAIERHRLTCAWMAPVMLSRVLTV---PDRDRFDLDSL---AWCIGGGEKT 276

Query: 316 PDL-LSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAG---SKKNSVGFILPNLEV 371
           P+  +  F + F   +  +AYGLTE +C   T  +     AG    K  S G  L ++E+
Sbjct: 277 PESRIRDFTRVFTRARYIDAYGLTE-TCSGDTLME-----AGREIEKIGSTGRALAHVEI 330

Query: 372 KFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGD 431
           + I    G+ LP N  GE+C+R   V +GY+ + E+TA       W  +GD+GY+D++G 
Sbjct: 331 R-IADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGF 388

Query: 432 IFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA 491
           +++ DR K++I   G  +A +E+E ++   P V +AAV+ + D+  GE   A VV+NP A
Sbjct: 389 LYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGA 448

Query: 492 KESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
             + + +       +A++K  R L   D +P++ SGK+++R+L+D++
Sbjct: 449 TLTLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDEL 495

Length = 497

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score =  182 bits (464), Expect = 4e-51
 Identities = 138/524 (26%), Positives = 234/524 (44%), Gaps = 57/524 (10%)

Query: 46  AELYADKVAFV-EAVSGKA--YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYG 102
           A++Y  K A + E+  G    Y+Y ++  +    A    SLG+RKG  V + L N  E+ 
Sbjct: 17  ADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFI 76

Query: 103 IVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV---SYAPIYEKVKGLG------ 153
               G+   G +    N      E    +  + A L+V    + P+Y +++         
Sbjct: 77  FCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRH 136

Query: 154 LPIIVLGEERIESAINWSELI--EAADKAGNNFSNDDDVKQTDLWIS------KGVMLTH 205
           + +  +     +   ++++L   + A        + DD  +  L+ S      KGV++TH
Sbjct: 137 ICLTRVALPADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEI-LFTSGTTSRPKGVVITH 195

Query: 206 RNLVANLCSTLFSVVPEMIGQVTT-----------LGLIPFFHIYGITGICCATLRNKGK 254
            NL        F+      G  +            L ++P FHI        A       
Sbjct: 196 YNL-------RFA------GYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGAT 242

Query: 255 VVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPL 314
            V++ ++  RAF   +  +  T    +P +I +L+  P     D     LR VM     L
Sbjct: 243 FVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQP-PSANDRQH-CLREVMFYL-NL 299

Query: 315 APDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFI 374
           +     +FE++F GV++  +YG+TE   I    GD   P    +  S+G      E + I
Sbjct: 300 SDQEKDAFEERF-GVRLLTSYGMTE--TIVGIIGDR--PGDKRRWPSIGRPGFCYEAE-I 353

Query: 375 NPETGKSLPSNTPGELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGD 431
             +  + LP+   GE+C++    + + + YY + + TA+ ++ +GWLHTGD GY+D++G 
Sbjct: 354 RDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGF 413

Query: 432 IFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA 491
            + VDR   +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N   
Sbjct: 414 FYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGE 473

Query: 492 KESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
             SE++   F   N+A +K    L     +P++ SGKI+++ LK
Sbjct: 474 TLSEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517

Length = 517

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score =  182 bits (464), Expect = 4e-51
 Identities = 131/529 (24%), Positives = 207/529 (39%), Gaps = 44/529 (8%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
            L   +   A    D  A V     +  TYA ++      A  LR LGL +G+ V + L 
Sbjct: 1   LLHHLLEDAAARLPDATALVHH--DRTLTYAALSERVLALASGLRGLGLARGERVAIYLD 58

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYA------------- 143
              E      G   AGGVF   NP   A ++   +   + +L+V+ +             
Sbjct: 59  KRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGC 118

Query: 144 PIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWIS----- 198
                +  +G P         E   +W +L+   D    +   D D+    L+ S     
Sbjct: 119 HDLRTLIIVGDPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAI-LYTSGSTGR 177

Query: 199 -KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVM 257
            KGV+L+HRNLVA   S   +   E       L ++P    YG   +  A       VV+
Sbjct: 178 PKGVVLSHRNLVAGAQSV--ATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVG-ATVVL 234

Query: 258 MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPD 317
            +    R  L AL  H +T    VPP+   L +    +    S   LR +  +   +   
Sbjct: 235 HDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPESAAPS---LRYLTNSGGAMPRA 291

Query: 318 LLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPE 377
            LS      P  ++   YGLTE      TY  P       + +S+G  +PN EV  +  +
Sbjct: 292 TLSRLRSFLPNARLFLMYGLTE--AFRSTYLPPE--EVDRRPDSIGKAIPNAEVLVLRED 347

Query: 378 TGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKN----GWLH-------TGDIGYI 426
             +  P    GEL  R   V  GY+N+ E+TA          G LH       +GD    
Sbjct: 348 GSECAP-GEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVWSGDTVRR 406

Query: 427 DDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV 486
           D++G ++ V R  E+IK  G++V+P E+E +      V +A    +PD   G+     V 
Sbjct: 407 DEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVT 466

Query: 487 MNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
                +     ++    + +  Y    ++H    +P++ +GKI R+ L 
Sbjct: 467 PPGGEELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALA 515

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score =  181 bits (462), Expect = 1e-50
 Identities = 154/566 (27%), Positives = 260/566 (45%), Gaps = 101/566 (17%)

Query: 32  VPENVTLP-DFVLQDAELYADKVAFV---EAVSGKAYTYAQVARDTRGFAKALRSLGLRK 87
           VPEN     D V   A+   DK+A +   +    K +T+  +   +   A   ++LG+ K
Sbjct: 12  VPENFNFAYDVVDAYADEEPDKLALIWCDDDGEEKIFTFGDLKDYSNKAANFFKALGIGK 71

Query: 88  GQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH---ASELKKQVDAADAKLIVSYAP 144
           G  V++ L    E+    L +   G +   A P  H   A ++  +++AA  K+IV    
Sbjct: 72  GDTVMLTLKRRYEFWFSMLALHKIGAI---AIPATHMLTAKDIVYRIEAAGIKMIVCIGE 128

Query: 145 ------IYEKVKGLGLP--IIVLGEERIESAINWSELIEAADK-----AGNNFSNDDDVK 191
                 I E     G P  ++++G+   E  I++ + IE A        GN+ + +DD+ 
Sbjct: 129 DGVPEHIDEAAPECGSPTLLVLVGDPVPEGWIDFDKEIENASPDFERPTGNDATCNDDI- 187

Query: 192 QTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTT--LGLI---PFFH--------- 237
              ++ + G                 + +P+M+    T  LG I    ++          
Sbjct: 188 -LLVYFTSGT----------------TGMPKMVEHDHTYPLGHIVTAKYWQNVKEGGLHL 230

Query: 238 --------------IYG--ITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTF--AP 279
                         +YG  I G   A       V   ++F+ +  L+ +  + VT   AP
Sbjct: 231 TVADTGWGKAVWGKLYGQWIAG--AAVF-----VYDYDKFDPKNLLEKIEKYGVTTFCAP 283

Query: 280 IVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE 339
             P I   L+K+ +   +DLS L  R   TA  PL P++ ++F K+  G+++ E +G TE
Sbjct: 284 --PTIYRFLIKEDLSK-YDLSSL--RYCTTAGEPLNPEVFNTF-KEKTGIKLMEGFGQTE 337

Query: 340 HSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQ---- 395
               TLT      P    K  S+G   P  ++  I+P+ GKS      GE+ +R+     
Sbjct: 338 ---TTLTIAT--FPWMEPKPGSMGKPSPGYDIDIIDPD-GKSCEVGEEGEIVIRTSDGKP 391

Query: 396 -CVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAEL 454
             +  GYY + E TA     +G+ HTGD  ++D+DG ++ V R  +LIK  G+++ P E+
Sbjct: 392 LGLFMGYYRDPERTAEVW-HDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEV 450

Query: 455 EAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED---DIMDFVASNVATYKK 511
           E+ L+ HP+V + AV  +PD   G++  A +V+    + SE+   ++ D V    A YK 
Sbjct: 451 ESALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKGYEPSEELKKELQDHVKKVTAPYKY 510

Query: 512 VRVLHFVDGIPKSHSGKIMRRILKDK 537
            R++ FVD +PK+ SGKI R  +++K
Sbjct: 511 PRIIEFVDELPKTISGKIRRVEIREK 536

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  180 bits (459), Expect = 1e-50
 Identities = 141/517 (27%), Positives = 221/517 (42%), Gaps = 75/517 (14%)

Query: 61  GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANP 120
           G + TY ++   +   ++ ++ L  ++G+ + ++LP+     +  L ++ AG V    N 
Sbjct: 5   GGSLTYRKLLTASLALSRLIKKLT-KEGENIGIMLPSSVAGALANLALLLAGKVPVMLNF 63

Query: 121 TAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGE-----ERIESAINWSELIE 175
           TA    L+     A  K +++     EK+K  GL +++ G      E + + I+ ++ ++
Sbjct: 64  TAGEEGLRSACKQAGIKTVITSRAFLEKLKLEGLVVLLEGVRIVYLEDLRAKISKADKLK 123

Query: 176 A--------ADKAGNNFSNDDDVKQTDLWIS------KGVMLTHRNLVANL--CSTLFSV 219
           A        A           D     L+ S      KGV+L+HRNL+AN+   + +  +
Sbjct: 124 AFLAAKLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDL 183

Query: 220 VPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAP 279
             E +     LG +P FH +G+T          G         LR             A 
Sbjct: 184 NTEDV----LLGALPLFHAFGLTV-TLLLPLLTG---------LRVVYYPNPLD----AK 225

Query: 280 IVPPIILS-----LVKDPI--------VDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKF 326
            +  +I       L   P             D S L  R V+  A  L       FE+KF
Sbjct: 226 KIAELIRDYKATILCGTPTFLRGYARNAHPEDFSSL--RLVVAGAEKLPEATRELFEEKF 283

Query: 327 PGVQVQEAYGLTEHS-CITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSN 385
            G+++ E YG TE S  I+       N   G+K  +VG  LP +EV+ ++PET + LP  
Sbjct: 284 -GIRILEGYGATECSPVIS------VNTPMGNKPGTVGRPLPGIEVRIVSPETHEELPIG 336

Query: 386 TPGELCVRSQCVMQGYYNNEEETA-RTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKY 444
             G L VR   VM GY NNEE+T+   +  +GW  TGDIG ID+DG + IV R+K   K 
Sbjct: 337 EGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKI 396

Query: 445 KGFQVAPAELEAILLTHPSVE-DAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVA 503
            G  V+   +E +L      +   A V +PDE+ GE                +++   + 
Sbjct: 397 GGEMVSLTAVEELLSEILPEDSLHAAVEVPDEKKGEKIVLLTT---TEDLDPEELNAILR 453

Query: 504 ----SNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
                N+A  +K+     VD IP   SGK   R LK 
Sbjct: 454 EAGLPNLAVPRKIL---HVDEIPLLGSGKTDYRGLKK 487

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  180 bits (458), Expect = 2e-50
 Identities = 133/511 (26%), Positives = 222/511 (43%), Gaps = 48/511 (9%)

Query: 46  AELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
           A L   ++A V+   G+ +TYA++       A  LR  G   G+ + V+  N      + 
Sbjct: 5   ARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALH 64

Query: 106 LGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIE 165
                 G ++   N    ASEL   +  A+ +L++    +       G   +        
Sbjct: 65  FACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAV-----AAGRTDVE------- 112

Query: 166 SAINWSELIEAADKAGNNF--SNDDDVKQTDLWIS------KGVMLTHRNLVANLCSTLF 217
              + +  I +AD        S   +     L+ S      KGVML+ RNL     +  F
Sbjct: 113 ---DLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHN--F 167

Query: 218 SVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDAL------I 271
            V+  +    + L   P FHI G+       L   G +++ N FE +  L  L      I
Sbjct: 168 GVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGI 227

Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKL-QLRAVMTAAAP-LAPDLLSSFEKKFPGV 329
           TH       VP +  +    P    FD + L  L A+ T  AP  A D+L   +    G+
Sbjct: 228 THYFC----VPQMAQAFRAQP---GFDAAALRHLTALFTGGAPHAAEDILGWLDD---GI 277

Query: 330 QVQEAYGLTEHSCITLTYGDPANPSA-GSKKNSVGFILPNLEVKFINPETGKSLPSNTPG 388
            + + +G++E   +   +G   +     +K  + G   P ++ + ++ + G   P+  PG
Sbjct: 278 PMVDGFGMSEAGTV---FGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPG 333

Query: 389 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQ 448
           EL +R   +  GY+   + TAR    +GW  TGDI   D DG  ++VDR K++    G  
Sbjct: 334 ELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGEN 393

Query: 449 VAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVAT 508
           V PAE+EA+L  HP + + AVV + D + GE+    +V    A    + I   +++ +A 
Sbjct: 394 VYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAK 453

Query: 509 YKKVRVLHFVDGIPKSHSGKIMRRILKDKML 539
           YK  + L  VD +P++ SGK+ +  L+D + 
Sbjct: 454 YKVPKHLRLVDALPRTASGKLQKARLRDALA 484

Length = 488

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score =  179 bits (457), Expect = 4e-50
 Identities = 135/515 (26%), Positives = 234/515 (45%), Gaps = 46/515 (8%)

Query: 54  AFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG 113
           A + A SG+  TY ++   +   A  LR+LGLR+G VV ++L N  E+  V      +G 
Sbjct: 2   AVIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGL 61

Query: 114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL------GLPIIVLGEERIESA 167
            ++  N    A+E+   VD + AK+++  A + +    L      G+P++++    +   
Sbjct: 62  YYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGF 121

Query: 168 INWSELIEA-ADKAGNNFSNDDDVKQTDLWIS-------KGVM--LTHRNLVANLCSTLF 217
            ++ E + A  D         D+    D+  S       KG+   L   +        L 
Sbjct: 122 RSYEEALAAQPDTPI-----ADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLA 176

Query: 218 SVVPEMIGQVTTLGLI--PFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEV 275
            +   M G   ++ L   P +H         + L   G VV+M +F+    L  +  + V
Sbjct: 177 LLGFGMYGGPDSVYLSPAPLYHT-APLRFGMSALALGGTVVVMEKFDAEEALALIERYRV 235

Query: 276 TFAPIVPPIILSLVKDP--IVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKK----FPGV 329
           T + +VP + + ++K P  +   +D+S   LR  + AAAP   ++     K+    + G 
Sbjct: 236 THSQLVPTMFVRMLKLPEEVRARYDVS--SLRVAIHAAAPCPVEV-----KRAMIDWWGP 288

Query: 330 QVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGE 389
            + E Y  +E   +T+      +    +   SVG     L    I  E G  LP    G 
Sbjct: 289 IIHEYYASSEGGGVTVI--TSED--WLAHPGSVG--KAVLGEVRILDEDGNELPPGEIGT 342

Query: 390 LCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQV 449
           +          Y+N+ E+TA   + +GW+  GD+GY+D+DG +++ DR  ++I   G  +
Sbjct: 343 VYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNI 402

Query: 450 APAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA---KESEDDIMDFVASNV 506
            P E+E +L+THP V D AV  +PDEE GE   A V     A        +++ ++   +
Sbjct: 403 YPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRL 462

Query: 507 ATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541
           A YK  R + F D +P++ +GK+ +R L+D+  E 
Sbjct: 463 AHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEG 497

Length = 502

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  178 bits (452), Expect = 2e-49
 Identities = 148/532 (27%), Positives = 248/532 (46%), Gaps = 45/532 (8%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           TLPD + + A  Y  + A       +  TY ++       A AL   G  K   V + L 
Sbjct: 22  TLPDLLSKAAADYGPRPAL--EFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLG 79

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVS-----YAPIYEKV-- 149
           N  ++ I   G + AG      +P      L  ++  + A+L+++       P+  K   
Sbjct: 80  NTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLE 139

Query: 150 KGLGLPIIVLGEERIESA-------------INWSELIEAADK-AGNNFSNDDDVKQTDL 195
           KGL   +IV  ++                  + +++ ++ A   A       DDV     
Sbjct: 140 KGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQY 199

Query: 196 W-----ISKGVMLTHRNLVANLCSTLFSV-----VPEMIGQVTTLGLIPFFHIYGITGIC 245
                 + KG MLTH NL + +  +++ V               + ++P FHIY +T I 
Sbjct: 200 TGGTTGLPKGAMLTHGNLTSAV--SIYDVWGKPSRATRGDVERVICVLPLFHIYALTVIL 257

Query: 246 CATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLR 305
             +LR    + +  RF++ A    +     T  P VP + ++L  DP +++ DLS L   
Sbjct: 258 LRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLAT- 316

Query: 306 AVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFI 365
            + +  APL  ++ + FE+K  G++++  +G+TE    T + G    P    K  S+G +
Sbjct: 317 -IGSGGAPLPVEVANFFERK-TGLKLKSGWGMTE----TCSPGTGHPPEGPDKPGSIGLM 370

Query: 366 LPNLEVKFIN-PETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIG 424
           LP +E+  ++  +  K LP    GEL +R   V +GY+N  EE+A     + +L TGDIG
Sbjct: 371 LPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFL-TGDIG 429

Query: 425 YIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAAC 484
           Y+D DG  F+VDR K++I   GF V P  +E  +  HP V++  V+ +PD+  GE   A 
Sbjct: 430 YMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAF 489

Query: 485 VVMNPNAKE-SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
           V + P AK  S D++  F+A  +  ++    + FVD +P++  GK+ R  L+
Sbjct: 490 VKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  175 bits (445), Expect = 2e-48
 Identities = 143/505 (28%), Positives = 237/505 (46%), Gaps = 48/505 (9%)

Query: 55  FVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV 114
           F+E   G  YTY  +   +   A  L +LG++ G  V V +    E   + L  + AG V
Sbjct: 20  FIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAV 79

Query: 115 FSGANPTAH-ASELKKQVDAADAKLIV----SYAPIYEKVKGLGLPII-VLGEERIESAI 168
           F   N TA+  +EL   +  A+  L+V    ++A + +     G P +  L  +   S  
Sbjct: 80  FLPLN-TAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGS-- 136

Query: 169 NWSELIEAADKAGNNFSNDDDVKQTD-----LWIS------KGVMLTHRNLVANLCSTLF 217
               L+EAA  A ++F  +   +  D     L+ S      KG ML+H NL++N   TL 
Sbjct: 137 ----LLEAAAAAPDDF--ETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNAL-TLV 189

Query: 218 SVVPEMIGQVTTLGLI---PFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHE 274
                    V    LI   P FH +G+       L     ++ + +F+  A L  +    
Sbjct: 190 DYWRFTPDDV----LIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMPRAT 245

Query: 275 VTFAPIVPPIILSLVKDPIVDEFDLSKLQ-LRAVMTAAAPLAPDLLSSFEKKFPGVQVQE 333
           V     VP     L+++P            +R  ++ +APL  +    F+++  G  + E
Sbjct: 246 VMMG--VPTFYTRLLQEP---RLTREAAAHMRLFISGSAPLLAETHREFQER-TGHAILE 299

Query: 334 AYGLTEHSCITLTYGDPANPSAGSKK-NSVGFILPNLEVKFINPETGKSLPSNTPGELCV 392
            YG+TE +  T      +NP  G ++  +VGF LP + ++  +PETG  LP    G + V
Sbjct: 300 RYGMTETNMNT------SNPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEV 353

Query: 393 RSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPA 452
           +   V +GY+   E+TA     +G+  TGD+G ID+ G + IV R K+LI   G+ V P 
Sbjct: 354 KGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPK 413

Query: 453 ELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKV 512
           E+E  +   P V ++AV+ +P  + GE   A VV  P A   E  I+  +   +A +K+ 
Sbjct: 414 EVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAALKGRLARFKQP 473

Query: 513 RVLHFVDGIPKSHSGKIMRRILKDK 537
           + + FVD +P++  GK+ + +L+++
Sbjct: 474 KRVFFVDELPRNTMGKVQKNLLREQ 498

Length = 504

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score =  175 bits (445), Expect = 2e-48
 Identities = 143/523 (27%), Positives = 234/523 (44%), Gaps = 31/523 (5%)

Query: 38  LPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPN 97
           L  F+ Q A  + D++A V     +++T+ ++       A AL + G+RKG  ++V   N
Sbjct: 9   LAHFLRQAARRFPDRIALVWG--DRSWTWREIDARVDALAAALAARGVRKGDRILVHSRN 66

Query: 98  VAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYA--PIY-EKVKGLGL 154
             +           G V+   N      E+    +A+ A+ ++ +A  P +   V+    
Sbjct: 67  CNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASP 126

Query: 155 PI---IVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTD-LWI---------SKGV 201
            +   + +G  R         L+  A   G   +N   V   D  W           K  
Sbjct: 127 DLTHVVAIGGARAGLDY--EALV--ARHLGARVANAA-VDHDDPCWFFFTSGTTGRPKAA 181

Query: 202 MLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRF 261
           +LTH  +   + + L  ++P    Q  +L + P  H  GI  +C         ++   RF
Sbjct: 182 VLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLCQVARGAATVLLPSERF 241

Query: 262 ELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSS 321
           +       +  H VT    VP I+  LV+ P VD +D S   LR V+ A AP+       
Sbjct: 242 DPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHS--SLRYVIYAGAPMYRADQKR 299

Query: 322 FEKKFPGVQVQEAYGLTEHS-CITL--TYGDPANPSAGSKKNSVGFILPNLEVKFINPET 378
              K   V VQ  +GL E +  IT+       A     ++  + GF    +EV+ I  + 
Sbjct: 300 ALAKLGKVLVQ-YFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQ-IQDDE 357

Query: 379 GKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRI 438
           G+ LP    GE+CV    V  GYYNN E  A+   ++GW  TGD+G++D  G ++I  R 
Sbjct: 358 GRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGRA 416

Query: 439 KELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDI 498
            ++    G  V P E+E  LLTHP+V + AV+ +PD   GE+  A  V    A   E ++
Sbjct: 417 SDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAEL 476

Query: 499 MDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541
           + ++   VA YK  +   F D +PKS  GKI ++++++++ E+
Sbjct: 477 LAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEER 519

Length = 528

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  171 bits (434), Expect = 6e-47
 Identities = 100/310 (32%), Positives = 157/310 (50%), Gaps = 21/310 (6%)

Query: 234 PFFH----IYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLV 289
           P +H     YG+        R  G +V+  RF+    L  +  H +T   +VP + + L+
Sbjct: 204 PLYHSAPNAYGL-----RAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLL 258

Query: 290 KDP--IVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTY 347
           K P  +  ++D+S   LR V+ AAAP   D+  +  + + G  + E YG TE   +T   
Sbjct: 259 KLPEEVRAKYDVS--SLRHVIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTESGAVTF-- 313

Query: 348 GDPANPS-AGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEE 406
              A    A S   +VG   P  E++F++ E G+ LP    GE+  R        Y+N+ 
Sbjct: 314 ---ATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTYHNKP 369

Query: 407 ETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVED 466
           E    ID+ G++ +GD+GY+D DG +F+ DR ++++   G  + PAE+EA+L   P V D
Sbjct: 370 EKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHD 429

Query: 467 AAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHS 526
            AV  +PD E GE   A V   P A   E DI   + + +A YK  + +  +  +P+  S
Sbjct: 430 CAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIEIMAELPREDS 489

Query: 527 GKIMRRILKD 536
           GKI +R L+D
Sbjct: 490 GKIFKRRLRD 499

Length = 509

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score =  171 bits (435), Expect = 8e-47
 Identities = 149/560 (26%), Positives = 244/560 (43%), Gaps = 79/560 (14%)

Query: 26  RHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGL 85
           R+ A  VP  +T   F+ + AE+Y D+ A +     +  T+A+     R  A AL   G+
Sbjct: 10  RNAANYVP--LTPLSFLERAAEVYPDRPAVIHG--DRRRTWAETYARCRRLASALARRGI 65

Query: 86  RKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAK-LIV--SY 142
            +G  V V+LPN+        G+  AG V +  N    A+ +   +   +AK LIV   +
Sbjct: 66  GRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEF 125

Query: 143 APIYEKVKGL--GLPIIVL--------GEERIESAINWSELIEAADKAGNNFSNDDDVKQ 192
           A +  +   L  G   +V+        G   I  A+++   + + D    +F        
Sbjct: 126 AEVAREALALLPGPKPLVIDVDDPEYPGGRFI-GALDYEAFLASGDP---DF---AWTLP 178

Query: 193 TDLW--IS-----------KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIY 239
            D W  I+           KGV+  HR    N  S + +    M      L  +P FH  
Sbjct: 179 ADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW--GMPKHPVYLWTLPMFHC- 235

Query: 240 GITGICCA-TLR-NKGKVVMMNRFELRAFLDALITHEVTF---APIVPPIILSLVKDPIV 294
              G C   T+    G  V + + + +   D +  H VT    APIV   +++   +   
Sbjct: 236 --NGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEW-R 292

Query: 295 DEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPAN-- 352
              D         M A A     +++  E+   G  +   YGLTE      TYG PA   
Sbjct: 293 AGID----HPVHAMVAGAAPPAAVIAKMEEI--GFDLTHVYGLTE------TYG-PATVC 339

Query: 353 ----------PSAGSKKNS-VGFILPNLE-VKFINPETGKSLPSN--TPGELCVRSQCVM 398
                         ++  +  G   P  E V  ++P+T + +P++  T GE+  R   VM
Sbjct: 340 AWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVM 399

Query: 399 QGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAIL 458
           +GY  N + T       GW HTGD+  +  DG I I DR K++I   G  ++  E+E +L
Sbjct: 400 KGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVL 458

Query: 459 LTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFV 518
             HP+V  AAVV+ PD + GE+P A V +   A  +E++I+     ++A +K  + + F 
Sbjct: 459 YRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAVVFG 518

Query: 519 DGIPKSHSGKIMRRILKDKM 538
           + +PK+ +GKI + +L+++ 
Sbjct: 519 E-LPKTSTGKIQKFVLREQA 537

Length = 545

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score =  169 bits (429), Expect = 9e-47
 Identities = 139/498 (27%), Positives = 222/498 (44%), Gaps = 82/498 (16%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV----FSGAN 119
           Y+Y ++   +  FA  L SLG+ KG+ V  +LP   E  + ALG +  G V    FS   
Sbjct: 1   YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60

Query: 120 PTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADK 179
           P      ++ +++  +AK++++   +YE+                          +  D 
Sbjct: 61  PEP----IRDRLELGEAKVLITTPELYERT-------------------------DPEDP 91

Query: 180 AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCST--LFSVVPEMI-------GQVTTL 230
           A  +F++    K       KGV+  HR +VA+  +   +  + P+ +       G VT  
Sbjct: 92  ALLHFTSGTTGK------PKGVLHVHRAVVAHYATARYVLDLRPDDVYWCTADPGWVTGT 145

Query: 231 GLIPFFHIYGITG--ICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSL 288
                   YGI    +   TL     VV    F+   +   L   +VT     P  +  L
Sbjct: 146 -------SYGIIAPLLNGVTL-----VVDEGEFDAERWYGILEEEKVTVWYTAPTALRML 193

Query: 289 VK--DPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLT 346
           ++    +   +DLS L  R + +   PL P+++   EK   G+ + + +  TE   I + 
Sbjct: 194 MRAGPELAARYDLSSL--RHIASVGEPLNPEVVVWGEKVL-GMPIHDTWWQTETGAIMI- 249

Query: 347 YGDPAN-PSAGSKKNSVGFILPNLEVKFINPE---TGKSLPSNTPGELCVRS--QCVMQG 400
               AN P    K  S+G  LP +E   I  +             GEL ++     + +G
Sbjct: 250 ----ANYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRG 305

Query: 401 YYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLT 460
           Y  NEE  A +   +GW  TGD+ Y D+DG  + V R  ++IK  G  V P E+E+ L+ 
Sbjct: 306 YLGNEERYASSF-VDGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESALME 364

Query: 461 HPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED---DIMDFVASNVATYKKVRVLHF 517
           HP+V +A V+  PD  AGEI  A V + P  + SE+   +++ F    +      R +HF
Sbjct: 365 HPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEPSEELRRELLTFARQRLGAAVAPREIHF 424

Query: 518 VDGIPKSHSGKIMRRILK 535
           VD +PK+ SGKIMRR+LK
Sbjct: 425 VDNLPKTRSGKIMRRLLK 442

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  170 bits (432), Expect = 2e-46
 Identities = 114/361 (31%), Positives = 176/361 (48%), Gaps = 42/361 (11%)

Query: 197 ISKGVMLTHRNLVANLCSTL----------FSVVPEMIGQVTTLGLIPFFHIYGITGIC- 245
           ++KG MLTH NLVAN+                ++ E  GQ   +  +P +HIY  T  C 
Sbjct: 221 LAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKE--GQEVMIAPLPLYHIYAFTANCM 278

Query: 246 CATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLR 305
           C  +     V++ N  ++  F+  L     +    +  + ++L+  P   + D S L+L 
Sbjct: 279 CMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLT 338

Query: 306 -----AVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLT--YGDPANPSAGSK 358
                A++ A A           ++  G  + E YGLTE S +  T  YG+ A      +
Sbjct: 339 NSGGTALVKATA--------ERWEQLTGCTIVEGYGLTETSPVASTNPYGELA------R 384

Query: 359 KNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWL 418
             +VG  +P   +K I+ + G  LP    GELC++   VM+GY+   E TA  +D  GW 
Sbjct: 385 LGTVGIPVPGTALKVIDDD-GNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWF 443

Query: 419 HTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAG 478
            TGDI  ID DG + IVDR K+LI   GF V P E+E +++ HP V + A + +PDE +G
Sbjct: 444 KTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSG 503

Query: 479 EIPAACVVMNPNAKE---SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
           E     VV    A++   S +++  +   N   YK  + +   D +P +  GKI+RR L+
Sbjct: 504 EAVKLFVV----ARDPGLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELR 559

Query: 536 D 536
           D
Sbjct: 560 D 560

Length = 562

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  167 bits (424), Expect = 4e-46
 Identities = 115/484 (23%), Positives = 205/484 (42%), Gaps = 68/484 (14%)

Query: 65  TYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHA 124
           T+  +  +    AKAL++ G+R G  V +V  N  E  ++    +  G   +  N     
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 125 SELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNF 184
           +E   Q++  D +L+++ + +               EE+   A +    IEAA +   + 
Sbjct: 61  NERTNQLEDLDVQLLLTDSLL---------------EEKDFQADSLDR-IEAAGRYETSL 104

Query: 185 SNDDDVKQTDLWI--------SKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGL---- 232
           S   ++ Q    +         K V  T RN          S V    G    LG     
Sbjct: 105 SASFNMDQIATLMFTSGTTGKPKAVPHTFRNH-------YASAV----GSKENLGFTEDD 153

Query: 233 -----IPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILS 287
                +P +HI G+  I    L     + ++++F     L+ +    VT   +VP  +  
Sbjct: 154 NWLLSLPLYHISGL-SILFRWLIEGATLRIVDKFN--QLLEMIANERVTHISLVPTQLNR 210

Query: 288 LVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTY 347
           L+ +            LR ++   + +   L+   ++   G+ +  +YG+TE +C  +T 
Sbjct: 211 LLDE------GGHNENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTE-TCSQVT- 260

Query: 348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEE 407
              A P     +  VG  L   E+K               GE+ V+   +M+GY    E 
Sbjct: 261 --TATPEMLHARPDVGRPLAGREIKIKVDNKEGH------GEIMVKGANLMKGYLYQGEL 312

Query: 408 TARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDA 467
           T    ++ GW +TGDIG +D +G ++++ R  +LI   G  + P E+E +L  HP +++A
Sbjct: 313 TP-AFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEA 371

Query: 468 AVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSG 527
            VV  PD E G++P A +V    +  S+  ++ ++   +A YK       +D +P + SG
Sbjct: 372 VVVPKPDAEWGQVPVAYIVS--ESDISQAKLIAYLTEKLAKYKVPIAFEKLDELPYNASG 429

Query: 528 KIMR 531
           KI+R
Sbjct: 430 KILR 433

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score =  165 bits (421), Expect = 1e-45
 Identities = 130/491 (26%), Positives = 208/491 (42%), Gaps = 62/491 (12%)

Query: 52  KVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAA 111
           K AF      ++ TY ++      FA  LR+LG+  G  V+++LP+  E     L  + A
Sbjct: 1   KTAFYCG--EQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKA 58

Query: 112 GGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWS 171
           G V    NP     +L+  +D + A L+V                               
Sbjct: 59  GAVAVALNPLLTPQDLEHILDDSGAALLV------------------------------- 87

Query: 172 ELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVA---NLCSTLFSVVPEMIGQVT 228
              EA D A   +++    K       KGVM  HR+ +         L  + P       
Sbjct: 88  --TEADDIAYWLYTSGTTGK------PKGVMHRHRDPLTFAEAFARELLGLQP----GDR 135

Query: 229 TLGLIPFFHIYGITGICCATLRNKGKVVMM-NRFELRAFLDALITHEVTFAPIVPPIILS 287
                  F  YG+       L +    V++       A LD L  H  T    VP +  +
Sbjct: 136 IFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRA 195

Query: 288 LVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTY 347
           L++             +R  ++A   L P  L+    +  G+++ +  G TE   I ++ 
Sbjct: 196 LLESG--AGSAPLFRSVRLCVSAGEAL-PAGLAERWAEATGIEILDGIGSTEVLHIFIS- 251

Query: 348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEE 407
                P A ++  + G  +P  E + ++   G+ +P+ T G+L VR   +  GY+N  E+
Sbjct: 252 ---NRPGA-ARPGTTGRPVPGYEARLVDES-GREVPAGTVGDLWVRGPSLAPGYWNLPEK 306

Query: 408 TARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDA 467
           T RT+ ++GWL TGD    D DG      R  ++IK  G  V+P E+EA L  HP+V +A
Sbjct: 307 TQRTL-RDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEA 365

Query: 468 AVVSLPDEEAGEIPAACVVMNPNAKES---EDDIMDFVASNVATYKKVRVLHFVDGIPKS 524
           AVV++PDE+      A VV  P        E D+  F+   +A YK  R + F+D +P++
Sbjct: 366 AVVAVPDEDGLVRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPYKCPRQIEFLDTLPRT 425

Query: 525 HSGKIMRRILK 535
            +GK+ R  L+
Sbjct: 426 ATGKLQRFRLR 436

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  162 bits (412), Expect = 1e-44
 Identities = 95/292 (32%), Positives = 147/292 (50%), Gaps = 30/292 (10%)

Query: 258 MNRFELRAFLDALITHEVT--FAPIVPPIILSLVKDPIVDEFDLSK---LQLRAVMTAAA 312
             RF+    L+ L  + VT   AP  P     L++       DLS      LR V++A  
Sbjct: 156 GRRFDAERTLELLERYGVTTFCAP--PTAYRMLLQQ------DLSSYDFSHLRHVVSAGE 207

Query: 313 PLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPAN-PSAGSKKNSVGFILPNLEV 371
           PL P+++  +     G+ +++ YG TE + + +     AN P    K  S+G   P   V
Sbjct: 208 PLNPEVIDWWRAAT-GLPIRDGYGQTE-TGLLV-----ANFPGMEVKPGSMGRPAPGYRV 260

Query: 372 KFINPETGKSLPSNTPGELCVRSQC----VMQGYYNNEEETARTIDKNGWLHTGDIGYID 427
             I+ E G  LP    G++ VR +     + +GY  + E+T  TI +  W  TGD    D
Sbjct: 261 AIIDDE-GNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATI-RGDWYLTGDRAIKD 318

Query: 428 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVM 487
           +DG  + V R  ++IK  G+++ P E+E+ L+ HP+V +AAVV  PD   GE+  A VV+
Sbjct: 319 EDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVRGEVVKAFVVL 378

Query: 488 NPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
            P  + SE+   ++ + V    A YK  R + FV+ +PK+ SGKI R  L+ 
Sbjct: 379 APGYQPSEELAKELQEHVKKRTAPYKYPREIEFVEELPKTVSGKIRRVELRA 430

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  164 bits (417), Expect = 3e-44
 Identities = 142/541 (26%), Positives = 235/541 (43%), Gaps = 53/541 (9%)

Query: 35  NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVV 94
           + +L D+  Q A    DK+A V+   G +YTY+ +       A  L + G+  G  V   
Sbjct: 22  DASLADYWQQTARAMPDKIAVVDN-HGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQ 80

Query: 95  LPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEK------ 148
           LP   E+ I+ L  +  G V     P+   +EL   ++   AK  + +AP   K      
Sbjct: 81  LPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAK--MFFAPTLFKQTRPVD 138

Query: 149 --------VKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWIS-- 198
                   +  L   + V       S+++ S++I   +      +   D     L+ S  
Sbjct: 139 LILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGT 198

Query: 199 ----KGVMLTHRNLVA---------NLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGIC 245
               KGVMLTH N++A         NL      ++P  +G  T      F H  G+T   
Sbjct: 199 EGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATG-----FLH--GVT--- 248

Query: 246 CATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLR 305
            A      + V+++ F   A L  L     T      P I  L+        DLS L+  
Sbjct: 249 -APFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRF- 306

Query: 306 AVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFI 365
             +     +   +    E +  G+++   YG TE S       +  +P +    ++ G+ 
Sbjct: 307 -FLCGGTTIPKKVAR--ECQQRGIKLLSVYGSTESS--PHAVVNLDDPLSRFM-HTDGYA 360

Query: 366 LPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGY 425
              +E+K ++ E  K+LP    GE   R   V  GY +  E TAR +D+ GW ++GD+  
Sbjct: 361 AAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCR 419

Query: 426 IDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACV 485
           +D+ G I I  R K++I   G  ++  E+E ILL HP + DA VV++PDE  GE   A V
Sbjct: 420 MDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYV 479

Query: 486 VMNP--NAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR 543
           V+    ++   E+ +  F    VA YK    +  +D +P++ SGKI + +L+  ++ ++ 
Sbjct: 480 VLKAPHHSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRLT 539

Query: 544 K 544
           +
Sbjct: 540 Q 540

Length = 547

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  163 bits (416), Expect = 4e-44
 Identities = 136/551 (24%), Positives = 213/551 (38%), Gaps = 103/551 (18%)

Query: 65  TYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV----FSGANP 120
           TYA++ R  R  A  L++LG   G  V+++ P   ++     G + AG +          
Sbjct: 25  TYAELDRRARAIAARLQALGAP-GDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83

Query: 121 TAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKA 180
             H + L   +  A A+ +++ + +   ++        L    I  A +    + AAD  
Sbjct: 84  GRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLI--AADDLAALAAADWR 141

Query: 181 GNNFSNDDDVKQTDLWI----------SKGVMLTHRNLVANL--CSTLFSVVPEMIGQVT 228
                        D+             KGVM+TH NL+ANL   +  F + P+ +G V+
Sbjct: 142 ------PPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDPDDVG-VS 194

Query: 229 TLGLIPFFH----IYGI-----TGICCATLRNKGKVVMM--NRFELR---AFLDALITHE 274
            L   P +H    I G+      G            V+M    F LR    +L+A+  + 
Sbjct: 195 WL---PLYHDMGLIGGLLQPLYAGFPV---------VLMSPLAF-LRRPLRWLEAISRYR 241

Query: 275 VTFAPIVPPIILSL----VKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKF---- 326
            T +   P     L    V+D  +   DLS    R     A P+  D L  F ++F    
Sbjct: 242 ATVSG-APNFAYDLCVRRVRDEQLAGLDLSSW--RVAFNGAEPVRADTLERFAERFAPAG 298

Query: 327 --PGVQVQEAYGLTEHSCI------------------TLTYGDPANPSAGSKKN----SV 362
             P       YGL E +                     L  G  A  +A         S 
Sbjct: 299 FRPEA-FLPCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSC 357

Query: 363 GFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETART------IDKNG 416
           G  LP  EV+ ++PET + LP    GE+ VR   V  GY+N  E TA T       D+ G
Sbjct: 358 GRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGG 417

Query: 417 WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVED---AAVVSLP 473
           WL TGD+G++  DG++++  R+K+LI  +G    P ++EA +           AA  S+ 
Sbjct: 418 WLRTGDLGFL-HDGELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVD 476

Query: 474 DEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFV----DGIPKSHSGKI 529
            +    +     V           + + + + VA    V     V      +PK+ SGKI
Sbjct: 477 GDGEERLVVVAEVRRRGLPADLAALAEAIRAAVAREHGVAPADVVLVRPGTLPKTSSGKI 536

Query: 530 MRRILKDKMLE 540
            RR  ++  L 
Sbjct: 537 QRRACRELYLA 547

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  165 bits (420), Expect = 2e-43
 Identities = 137/530 (25%), Positives = 227/530 (42%), Gaps = 81/530 (15%)

Query: 60   SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGAN 119
            +G   +Y +        A+ L+   L+  + V ++LP      +  L ++ AG V    N
Sbjct: 638  TGGELSYGKALTGALALARLLKRE-LKDEENVGILLPPSVAGALANLALLLAGKVPVNLN 696

Query: 120  PTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG------LPIIVLGEERIESAINWSEL 173
             TA  + LK  ++ A  K +++     EK+K  G        + V+  E +++ I+  + 
Sbjct: 697  YTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDK 756

Query: 174  IEAADKA------------GNNFSNDDDVKQTDLWIS------KGVMLTHRNLVANLCST 215
            + A   A            G  F  DD    T ++ S      KGVML+H N+++N+   
Sbjct: 757  LTALLAARLLPARLLKRLYGPTFKPDDTA--TIIFSSGSEGEPKGVMLSHHNILSNI--- 811

Query: 216  LFSVVPEMIGQV-------TTLGLIPFFHIYGITGICCATLRNKGKVVMM-NRFELRAFL 267
                  E I  V         L  +PFFH +G+T      L    KVV   +  +     
Sbjct: 812  ------EQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIA 865

Query: 268  DALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFP 327
              +  H  T     P  +   +++  +     + L  R V+  A  L P++  +FE+KF 
Sbjct: 866  KLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASL--RLVVAGAEKLKPEVADAFEEKF- 922

Query: 328  GVQVQEAYGLTEHS-CITLTYGDPANPS----AGSKKNSVGFILPNLEVKFINPETGKSL 382
            G+++ E YG TE S   ++   D          GSK+ SVG  LP + V+ ++PET + L
Sbjct: 923  GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEEL 982

Query: 383  PSNTPGELCVRSQCVMQGYYNNEEETA---RTIDKNGWLHTGDIGYIDDDGDIFIVDRIK 439
            P    G + +    VM+GY  + E+TA   + ID  GW  TGD G++D+DG + I DR  
Sbjct: 983  PPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYS 1042

Query: 440  ELIKYKGFQVAPAELEAILLTHPSVEDA------------AVVSLPDEEAGEIPAACVVM 487
               K  G        E +     +VE+             AV ++PDE+ GE     VV+
Sbjct: 1043 RFAKIGG--------EMV--PLGAVEEELAKALGGEEVVFAVTAVPDEKKGE---KLVVL 1089

Query: 488  NPNAKESEDDIMDFVA-SNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
            +    E  +++   +  S +    K      V+ +P   SGK+  + LK+
Sbjct: 1090 HTCGAEDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKE 1139

Length = 1146

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score =  160 bits (406), Expect = 1e-42
 Identities = 143/531 (26%), Positives = 250/531 (47%), Gaps = 79/531 (14%)

Query: 50  ADKVA--FVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALG 107
            DKVA  +++A   + YTY ++   +  FA  L+ LG+ KG  V + +P + E     LG
Sbjct: 58  KDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLG 117

Query: 108 IMAAGGV----FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLP----IIVL 159
            +  G +    F      A    L+     ++AK++++   + E+     LP    ++++
Sbjct: 118 ALKNGAIVGPLFEAFMEEAVRDRLED----SEAKVLITTPALLERKPADDLPSLKHVLLV 173

Query: 160 GEER--IESAINWSELIEAADKAGNNFSNDDDVKQTDL-------WIS------KGVMLT 204
           GE+       ++++ L+E A       S++ D++ TD        + S      KGV+  
Sbjct: 174 GEDVEEGPGTLDFNALMEQA-------SDEFDIEWTDREDGAILHYTSGSTGKPKGVLHV 226

Query: 205 HRNLVANLCSTLFSV--VPEMI-------GQVT--TLGLI-PFFHIYGITGICCATLRNK 252
           H  ++ +  +  + +    + +       G VT  + G+  P+ +  G T          
Sbjct: 227 HNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLN--GAT---------- 274

Query: 253 GKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVK--DPIVDEFDLSKLQLRAVMTA 310
             V+   RF    +   L  ++VT     P  I  L+   D +V ++DLS   LR +++ 
Sbjct: 275 -NVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLS--SLRHILSV 331

Query: 311 AAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPAN-PSAGSKKNSVGFILPNL 369
             PL P+++    K F G+ + + + +TE   I +     AN P+   K  S+G  LP +
Sbjct: 332 GEPLNPEVVRWGMKVF-GLPIHDNWWMTETGGIMI-----ANYPAMDIKPGSMGKPLPGI 385

Query: 370 EVKFINPETGKSLPSNTPGELCVRS--QCVMQGYYNNEEETARTIDKNGWLHTGDIGYID 427
           E   ++ + G  LP N  G L ++     +M+G +NN E+         W  +GD  Y+D
Sbjct: 386 EAAIVDDQ-GNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF-AGDWYVSGDSAYMD 443

Query: 428 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVM 487
           +DG  +   R+ ++IK  G +V P E+E+ L+ HP+V +A V+  PD   GEI  A V +
Sbjct: 444 EDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVAL 503

Query: 488 NPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
            P  + SE+   +I  FV   +  +   R + F D +PK+ SGKIMRR+LK
Sbjct: 504 RPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLK 554

Length = 570

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score =  156 bits (397), Expect = 9e-42
 Identities = 127/522 (24%), Positives = 212/522 (40%), Gaps = 52/522 (9%)

Query: 46  AELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
           A+   DK A + A +G+  TY ++   +   A   RSLGL++G  V + + N   Y  V 
Sbjct: 7   AQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVC 66

Query: 106 LGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL------GLPIIVL 159
                +G  ++  N     +E    VD + A+ +++ A   +  + L          +VL
Sbjct: 67  WAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVL 126

Query: 160 GE----ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWIS-------KGVM--LTHR 206
                 E              A          D+   TD+  S       KG+   L  +
Sbjct: 127 DGDGELEGFVG-------YAEAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQ 179

Query: 207 NLVANL-----CSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRF 261
                L        L+    +M+     L   P +H           +R  G V++M  F
Sbjct: 180 PPDTPLPLTAFLQRLWGFRSDMV----YLSPAPLYHS-APQRAVMLVIRLGGTVIVMEHF 234

Query: 262 ELRAFLDALITHEVTFAPIVPPIILSLVKDP--IVDEFDLSKLQLRAVMTAAAPLAPDLL 319
           +   +L  +  + VT   +VP +   ++K P  + D++DLS   L   + AAAP  P + 
Sbjct: 235 DAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLS--SLEVAIHAAAPCPPQVK 292

Query: 320 SSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG 379
                 + G  + E Y  TE    T       +    +   +VG  +       I  + G
Sbjct: 293 EQMIDWW-GPIIHEYYAATEGLGFTAC----DSEEWLAHPGTVGRAM--FGDLHILDDDG 345

Query: 380 KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNG-WLHTGDIGYIDDDGDIFIVDRI 438
             LP   PG +        + Y N+  +TA     +G W   GDIGY+D+DG +++ DR 
Sbjct: 346 AELPPGEPGTIWFEGGRPFE-YLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRA 404

Query: 439 KELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED-- 496
             +I   G  + P E E +L+THP V DAAV  +P+E+ GE   A V             
Sbjct: 405 AFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALA 464

Query: 497 -DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
            +++ F    ++  K  R + F D +P+  +GK+ +R+L+D+
Sbjct: 465 AELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDR 506

Length = 511

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score =  156 bits (397), Expect = 2e-41
 Identities = 141/537 (26%), Positives = 225/537 (41%), Gaps = 58/537 (10%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKA----YTYAQVARDTRGFAKALRSLGLRKGQVVI 92
           T+ D +        DK A      G      +TY ++A      A  L  LG+ +G VV 
Sbjct: 25  TINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVS 84

Query: 93  VVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV--------SYAP 144
             LPN  E+ ++ L     G V +   P     EL   +  A++K++V         +A 
Sbjct: 85  CQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAA 144

Query: 145 IYEKVKGLGLP----IIVLGE------ERIESAINWSELIEAADKAGNNFSND----DDV 190
           +  +++   LP    ++V+G       E +     W    E    A    +      DDV
Sbjct: 145 MARRLRP-ELPALRHVVVVGGDGADSFEALLITPAW----EQEPDAPAILARLRPGPDDV 199

Query: 191 KQTDLWIS------KGVMLTHRNLVANLCSTLFSVVPEMIG---QVTTLGLIPFFHIYG- 240
            Q  ++ S      KGVM T   L+AN+         E +G       L   P  H  G 
Sbjct: 200 TQL-IYTSGTTGEPKGVMHTANTLMANI-----VPYAERLGLGADDVILMASPMAHQTGF 253

Query: 241 ITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLS 300
           + G+    +      V+ + ++     + + T  VTF     P +  L +        +S
Sbjct: 254 MYGLMMPVMLG-ATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVS 312

Query: 301 KLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKN 360
              LR  + A AP+   L+        G ++  A+G+TE+  +TLT  D  +  A     
Sbjct: 313 --SLRTFLCAGAPIPGALVERARAAL-GAKIVSAWGMTENGAVTLTKLDDPDERAS---T 366

Query: 361 SVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHT 420
           + G  LP +EV+ ++ + G  LP+   G L VR      GY    +      D +GW  T
Sbjct: 367 TDGCPLPGVEVRVVDAD-GAPLPAGQIGRLQVRGCSNFGGYLKRPQLNG--TDADGWFDT 423

Query: 421 GDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEI 480
           GD+  ID DG I I  R K++I   G  +   E+EA+L  HP++   A+V+ PDE  GE 
Sbjct: 424 GDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGER 483

Query: 481 PAACVVMNPNAKESEDDIMDFV-ASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
             A VV  P      +++++F+ A  VA       L   D +P++ SGKI +  L++
Sbjct: 484 ACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLRE 540

Length = 547

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  155 bits (393), Expect = 4e-41
 Identities = 139/539 (25%), Positives = 224/539 (41%), Gaps = 72/539 (13%)

Query: 36  VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVL 95
            TL D +   A  Y D++A ++    +  +YA++ +     A  LR LG++ G  V+V L
Sbjct: 28  RTLTDILTDHAARYPDRIAVIDG--ERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQL 85

Query: 96  PNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV--------SYAPIYE 147
           PNVAE+ I    ++  G     A P+  ASEL       +A L++         Y P   
Sbjct: 86  PNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFAR 145

Query: 148 KV--KGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKG----- 200
           ++  K   L  +++  E    ++  + L   A          D  +     +S G     
Sbjct: 146 ELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGL-FTPAPPADAGEVAFFQLSGGTTGTP 204

Query: 201 --VMLTHRNLVANLCSTLFSVVPEMIG---QVTTLGLIPFFHIY-----GITGICCATLR 250
             +  TH +   +          E+ G   Q   L  +P  H +     G  G       
Sbjct: 205 KLIPRTHNDYYYS-----VRASAEICGFDQQTVYLCALPAAHNFPLSSPGALG----VFL 255

Query: 251 NKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDE-FDLSKLQLRAVMT 309
             G VV+            +  H VT   +VPP+  SL       E  DLS L+L  +  
Sbjct: 256 AGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLA-SLWLQAAEWERADLSSLRL--LQV 312

Query: 310 AAAPLAPDLLSSFEKKFPGVQVQEAYGLTE-----------HSCITLTYGDPANPSAGSK 358
             A L+  L         G Q+Q+ +G+ E              I  T G P        
Sbjct: 313 GGARLSATLARRVPAVL-GCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRP-------- 363

Query: 359 KNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWL 418
                 + P+ EV+ ++ + G  +     GEL  R    ++GYY   E  AR  D +G+ 
Sbjct: 364 ------LSPDDEVRVVDAD-GNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFY 416

Query: 419 HTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAG 478
            +GD+   D DG + +  R+K+ I   G ++A  E+E +LL HP+V DAA+V++PDE  G
Sbjct: 417 RSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLG 476

Query: 479 E-IPAACVVMNPNAKESEDDIMDFV-ASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
           E   A  VV  P  + ++  +  F+    +A +K    + FVD +P +  GKI ++ L+
Sbjct: 477 EKSCAFIVVKEPPLRAAQ--LRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALR 533

Length = 542

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score =  155 bits (392), Expect = 7e-41
 Identities = 141/535 (26%), Positives = 237/535 (44%), Gaps = 80/535 (14%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH 123
           YT+AQ  +  R  A AL    +  G  V V+ PN+        G+  AG V +  N   +
Sbjct: 46  YTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLN 105

Query: 124 ASELKKQVDAADAKLIV-----------SYAPIYEKVKGLGLP--IIVLGEERIE----- 165
           A  +   ++ + +++++           +   + EK K    P  +IV+G+   +     
Sbjct: 106 APTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQ 165

Query: 166 -----SAINWSELIEAADKAGNNFSNDDDVKQTDLWIS-------KGVMLTHRNLVANLC 213
                 AI + + +E  D         D+ +   L  +       KGV+L HR   A L 
Sbjct: 166 YALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRG--AYLM 223

Query: 214 STLFSVVPEMIGQVTTLGLIPFFH------IYGITGICCATLRNKGKVVMMNRFELRAFL 267
           +   +++  M      L  +P FH       + +  +C       G  + + +   +A  
Sbjct: 224 ALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALC-------GTNICLRQVTAKAIY 276

Query: 268 DALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFP 327
            A+  + VT     P ++ ++V  P  +   L   ++  VMTA A   P +L +  +K  
Sbjct: 277 SAIANYGVTHFCAAPVVLNTIVNAPKSETI-LPLPRVVHVMTAGAAPPPSVLFAMSEK-- 333

Query: 328 GVQVQEAYGLTEHSCITLTYG-----------DPANPSAGSKKNS---VGFI-LPNLEVK 372
           G +V   YGL+E      TYG           D   P   ++ N+   V +I L  L+V 
Sbjct: 334 GFRVTHTYGLSE------TYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDV- 386

Query: 373 FINPETGKSLPSN--TPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDG 430
            ++ +T K +P++  T GE+ +R   VM+GY  N +        NGW H+GD+G    DG
Sbjct: 387 -VDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDG 444

Query: 431 DIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN 490
            I I DR K++I   G  ++  E+E ++ THP+V +A+VV+ PDE  GE P A V + P 
Sbjct: 445 YIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPG 504

Query: 491 AKES-----EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE 540
             +S      +DIM F    +  Y   + + F   +PK+ +GKI + +L+ K  E
Sbjct: 505 VDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAKE 558

Length = 567

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  151 bits (383), Expect = 2e-40
 Identities = 94/293 (32%), Positives = 153/293 (52%), Gaps = 26/293 (8%)

Query: 255 VVMMN--RFELRAFLDALITHEVTF--APIVPPIILSLVKDPIVDEFDLSKLQLRAVMTA 310
           V  +N  RF+ R +L AL    VT   AP  P +    ++  +  ++D+    LR  ++A
Sbjct: 154 VFGINYPRFDARRYLGALEKFGVTTFCAP--PTVWRMFIQQDL-AQYDVR---LREAVSA 207

Query: 311 AAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLE 370
             PL P+++   +K + G+ +++ YG TE    T   G+   P    K  S+G  LP   
Sbjct: 208 GEPLNPEVIERVKKAW-GLTIRDGYGQTE---TTAMIGNS--PGQKVKPGSMGRPLPGYR 261

Query: 371 VKFINPETGKSLPSNTPGELCV----RSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYI 426
           V  ++ E GK +P  T GE+ +    R   +M GY  + E+TA      G+  TGD  Y 
Sbjct: 262 VVLLDDE-GKEIP-VTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFR-GGYYRTGDKAYR 318

Query: 427 DDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV 486
           D+DG ++ V R  ++ K   ++++P E+E+ LL HP+V +AAVV  PD     +P A +V
Sbjct: 319 DEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYIV 378

Query: 487 MNPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
           + P  + S +   ++   V   +A YK++R + FV  +PK+ SGKI R  L+ 
Sbjct: 379 LKPGYEPSRELALELFAHVRERLAPYKRIRRIEFVGELPKTISGKIRRVELRK 431

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score =  152 bits (387), Expect = 3e-40
 Identities = 137/552 (24%), Positives = 224/552 (40%), Gaps = 67/552 (12%)

Query: 19  EEHIFRSRHPAVP--VPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGF 76
           E         AV    P   TLP  + + AE Y D+   V    G  +TYA+ AR     
Sbjct: 2   EPLGAGLAARAVDPLPPSERTLPAMLARQAERYPDRPLLVFG--GTRWTYAEAARAAAAA 59

Query: 77  AKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADA 136
           A AL + G+++G  V ++  N  E+  V LG    G +    N      +L+  +  + A
Sbjct: 60  AHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGA 119

Query: 137 KLIVSYAPIYEKVKGLGLPIIVLGEE-RIESAINWS-----------ELIEAADKAGNNF 184
           +L+V  A +   ++      + L     +++  + S            L   A  A    
Sbjct: 120 RLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAA---- 175

Query: 185 SNDDDVKQTDLW----------ISKGVMLTH-------RNLVANLCSTLFSVVPEMIGQV 227
                V+  D             SKGV   H       RN   +L      V+       
Sbjct: 176 ----AVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVL------Y 225

Query: 228 TTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILS 287
           TTL   P FH   +     A L      V+  RF    F  A+  H  T   ++  ++  
Sbjct: 226 TTL---PLFHTNALNAFFQALL-AGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSI 281

Query: 288 LVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTY 347
           L+  P  +     ++  R  +    P    L ++F ++F GV + + YG TE + +    
Sbjct: 282 LLSQPARESDRAHRV--RVALGPGVP--AALHAAFRERF-GVDLLDGYGSTETNFVI--A 334

Query: 348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQ---CVMQGYYNN 404
               +   GS    +G + P  E + ++ E  + LP   PGEL +R+        GY+  
Sbjct: 335 VTHGSQRPGS----MGRLAPGFEARVVD-EHDQELPDGEPGELLLRADEPFAFATGYFGM 389

Query: 405 EEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSV 464
            E+T     +N W HTGD    D DG    VDRIK+ I+ +G  ++  E+E +LL+HP+V
Sbjct: 390 PEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAV 448

Query: 465 EDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKS 524
             AAV  +P E   +   A VV+          ++      +A +   R + FV  +PK+
Sbjct: 449 AAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVEFVAALPKT 508

Query: 525 HSGKIMRRILKD 536
            +GK+ + +L++
Sbjct: 509 ENGKVQKFVLRE 520

Length = 542

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score =  152 bits (387), Expect = 3e-40
 Identities = 132/506 (26%), Positives = 236/506 (46%), Gaps = 48/506 (9%)

Query: 65  TYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHA 124
           TYAQ+       ++AL   G++ G  V  +  N   +     GIM  G +    NP    
Sbjct: 41  TYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFP 100

Query: 125 SELKKQVDAADAKLI---VSYAPIYEKVKGLGLP----IIVLG------EERIESAINWS 171
            ++   ++ A+ +++   +++ PI EK+    LP     +VL       +  +++A+ + 
Sbjct: 101 EQIAWIINHAEDRVVITDLTFVPILEKIAD-KLPSVERYVVLTDAAHMPQTTLKNAVAYE 159

Query: 172 ELIEAADKAGNNFSNDDDVKQTDLWIS------KGVMLTHRNLVANLCSTLFSVVPEMIG 225
           E I  AD      + D++      + S      KGV+ +HR   +N+   L +   + +G
Sbjct: 160 EWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHR---SNVLHALMANNGDALG 216

Query: 226 QV---TTLGLIPFFHI--YGITGICCATLRNKGKVVMMN-RFELRAFLDALITHEVTFAP 279
                T L ++P FH   +GI     +      K+VM   + +  +  + L T +VTF  
Sbjct: 217 TSAADTMLPVVPLFHANSWGIAFSAPSM---GTKLVMPGAKLDGASVYELLDTEKVTFTA 273

Query: 280 IVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE 339
            VP + L L++    +   L  L++     +A P +  ++ +FE    GV+V+ A+G+TE
Sbjct: 274 GVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRS--MIKAFEDM--GVEVRHAWGMTE 329

Query: 340 HSCI-TL-TYGDPANPSAGSKKNSV----GFILPNLEVKFINPETGKSLPS--NTPGELC 391
            S + TL     P +   G  +  V    G+    +E+K  +   GK LP    T G L 
Sbjct: 330 MSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDA-GKELPWDGKTFGRLK 388

Query: 392 VRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAP 451
           VR   V   YY  + E    +D +G+  TGD+  ID  G + I DR K++IK  G  ++ 
Sbjct: 389 VRGPAVAAAYYRVDGEI---LDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISS 445

Query: 452 AELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKK 511
            +LE + + HP V +AAV+ +   +  E P   V + P    + ++I+ ++   +A +  
Sbjct: 446 IDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKWWM 505

Query: 512 VRVLHFVDGIPKSHSGKIMRRILKDK 537
              + FVD IP + +GKI++  L+++
Sbjct: 506 PDDVAFVDAIPHTATGKILKTALREQ 531

Length = 542

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score =  149 bits (378), Expect = 4e-39
 Identities = 135/524 (25%), Positives = 231/524 (44%), Gaps = 36/524 (6%)

Query: 38  LPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPN 97
           + D V   A    +  A V      A +Y  +AR     A  L   GL  G  V + + +
Sbjct: 18  IADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGS 77

Query: 98  VAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAK--LIVSYAPIYEKVKGL-GL 154
            AE+ +  L    A  V    +P    +E + +  AA A+  LI +  P           
Sbjct: 78  NAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWW 137

Query: 155 PIIV-LGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWI---------SKGVMLT 204
           P+ V +G +   S    S  ++AA +     S  + ++  D  I          K V  T
Sbjct: 138 PLTVNVGGDSGPSGGTLSVHLDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWT 197

Query: 205 HRNLVANLCSTLFSVVP--EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVM--MNR 260
           H    AN+ S++ +++    +  +  T+ ++P +H +G+     ATL + G V++    R
Sbjct: 198 H----ANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGR 253

Query: 261 FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLS 320
           F    F D +     T+   VP I   L++    +        LR + + +APL  +   
Sbjct: 254 FSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQ 313

Query: 321 SFEKKFPGVQVQEAYGLTE--HSCITLT---YGDPANP--SAGSKKNSVGFILPNLEVKF 373
           + + +F    V  A+G+TE  H   T      G   NP  S G    S G      +++ 
Sbjct: 314 ALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTG-----AQIRI 367

Query: 374 INPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIF 433
           +  + G  LP+   GE+ +R   V++GY  +   TA     +GWL TGD+G +   GD+ 
Sbjct: 368 VGSD-GLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLS 425

Query: 434 IVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKE 493
           I  RIKELI   G +++P  +E +L +HP+V +AAV  +PD+  GE  AA +V   +A  
Sbjct: 426 IRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPP 485

Query: 494 SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
           + ++++ F    +A ++         G+P +  G + RR + ++
Sbjct: 486 TAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQ 529

Length = 534

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score =  149 bits (378), Expect = 7e-39
 Identities = 111/351 (31%), Positives = 173/351 (49%), Gaps = 35/351 (9%)

Query: 197 ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCAT----LRNK 252
             KG      + +A L   L S VP   G+ T L   P FH    TG    T    L + 
Sbjct: 221 TPKGAPRPEPSPLAPLAG-LLSRVPFRAGETTLLP-APMFHA---TGWAHLTLAMALGST 275

Query: 253 GKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSL---VKDPIVDEFDLSKLQLRAVMT 309
             VV+  RF+  A L+ +  H+ T A +V P++LS    +   ++ ++D S L  + +  
Sbjct: 276 --VVLRRRFDPEATLEDIAKHKAT-ALVVVPVMLSRILDLGPEVLAKYDTSSL--KIIFV 330

Query: 310 AAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPA----NPSAGSKKNSVGFI 365
           + + L+P+L +   + F G  +   YG TE +  T+    P      P       +VG  
Sbjct: 331 SGSALSPELATRALEAF-GPVLYNLYGSTEVAFATIA--TPEDLAEAPG------TVGRP 381

Query: 366 LPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGY 425
              + VK I  E G  +P    G + V +    +GY +      + ID  G L +GD+GY
Sbjct: 382 PKGVTVK-ILDENGNEVPRGVVGRIFVGNGFPFEGYTDGR--DKQIID--GLLSSGDVGY 436

Query: 426 IDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACV 485
            D+DG +F+  R  ++I   G  V PAE+E +L  HP V +AAV+ + DEE G+   A V
Sbjct: 437 FDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFV 496

Query: 486 VMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
           V  P A   ED I D+V  N+A YK  R + F+D +P++ +GK+++R L++
Sbjct: 497 VKAPGAALDEDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELRE 547

Length = 549

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  146 bits (370), Expect = 9e-39
 Identities = 106/439 (24%), Positives = 181/439 (41%), Gaps = 64/439 (14%)

Query: 65  TYAQVARDTRGFAKALRSL-GLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH 123
           TY ++       A+ LR+  G+  G  V V+L   AE  +  L ++ AG  +   +P   
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60

Query: 124 ASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNN 183
           A  L   ++ A A+L+++ + +  ++ GL LP+I+L    + +  +       A    + 
Sbjct: 61  AERLAFILEDAGARLLLTDSALASRLAGLVLPVILLDPLELAALDD-----APAPPPPDA 115

Query: 184 FSNDDDVKQTDLWIS---------KGVMLTHRNLVANLCSTLFSVVPEMIG--------Q 226
            S  DD+     ++          KGV++THR+LV      L + +    G        Q
Sbjct: 116 PSGPDDLA----YVIYTSGSTGRPKGVVVTHRSLVN-----LLAWLARRYGLDPDDRVLQ 166

Query: 227 VTTLG----LIPFFHIYGITGICCATLRNKGKVVMMNRFELR---AFLDALI-THEVTFA 278
             +L     +   F            L     +V+    E R   A L ALI  H VT  
Sbjct: 167 FASLSFDASVEEIF----------GALLAGATLVVPPEDEERDDAALLAALIAEHPVTVL 216

Query: 279 PIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLT 338
             + P +L+L+         L+   LR V+     L P L+  +  + PG ++   YG T
Sbjct: 217 -NLTPSLLALLAA--ALPPALA--SLRLVILGGEALTPALVDRWRARGPGARLINLYGPT 271

Query: 339 EHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVM 398
           E +  +       + +       +G  L N  +  ++ +  + +P    GEL +    V 
Sbjct: 272 ETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLDDD-LRPVPVGVVGELYIGGPGVA 330

Query: 399 QGYYNNEEETA--------RTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVA 450
           +GY N  E TA           D      TGD+     DG++  + RI + +K +G+++ 
Sbjct: 331 RGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIE 390

Query: 451 PAELEAILLTHPSVEDAAV 469
             E+EA LL HP V +A V
Sbjct: 391 LGEIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score =  146 bits (370), Expect = 3e-38
 Identities = 132/519 (25%), Positives = 211/519 (40%), Gaps = 46/519 (8%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           T+ + + + A    D  A V+   G   TY+++     G A  L + G+R  Q V VV P
Sbjct: 2   TVFEMLRRAATRAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAP 61

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQV--DAADAKLIVSYAPIYEKVKGLGL 154
           N  +  I  L +   G V +  NP    +E+ + +      A +I   A + + +   G 
Sbjct: 62  NSVDAVIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGS 121

Query: 155 PIIVLGE-ERIESAINWSE--LIEA----ADKAGNNFSNDDDVKQTDLWISKGVMLTHRN 207
            + VL   + +      S    IE      ++    F            + KG ++  R 
Sbjct: 122 GVRVLALGDLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTG-----LPKGAVIPQR- 175

Query: 208 LVANLCSTLFSVVPEMIGQV--------TTLGLIPFFHIYGITGICCATLRNKGKVVMMN 259
                     S V  M  Q           LGL+P +H+ G   +  A L   G  V++ 
Sbjct: 176 -------AAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAALALDGTYVVVE 228

Query: 260 RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLL 319
            F+    L  +    VT     P  + +L          L    L  V  A A +   +L
Sbjct: 229 EFDPADALKLIEQERVTSLFATPTHLDALAAAAEGAPLKLD--SLEHVTFAGATMPDAVL 286

Query: 320 SSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKF--INPE 377
               +  PG +V   YG TE     +      +P  G++    GF     EV+   I   
Sbjct: 287 ERVNQHLPGEKV-NIYGTTE----AMNSLYMRDPRTGTEMRP-GFFS---EVRIVRIGGS 337

Query: 378 TGKSLPSNTPGELCV-RSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVD 436
             ++LP+   GEL V  +     GY N  + TA  + ++GW  T D+  +D  G + I+ 
Sbjct: 338 PDEALPNGEEGELVVAAADATFTGYLNQPQATAEKL-QDGWYRTSDVAVVDPSGTVRILG 396

Query: 437 RIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED 496
           R+ ++I   G  + P+E+E +L   P V +  V+ LPDE  G+   ACVV       S D
Sbjct: 397 RVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVVPREGETLSAD 456

Query: 497 DIMDF-VASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
            +  F  AS +A +K+ R   F+D +PK+   K++RR L
Sbjct: 457 ALDTFCRASELADFKRPRRYFFLDELPKNAMNKVLRRQL 495

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score =  144 bits (367), Expect = 5e-38
 Identities = 90/349 (25%), Positives = 154/349 (44%), Gaps = 29/349 (8%)

Query: 199 KGVMLTHRNLVANLC---STLFSVVPEM-IGQVTTLGLIPFFHIYGITGICCATLRNKGK 254
           KGVM+ HR LV NL       + +     + Q  +      F    +  I    L +   
Sbjct: 109 KGVMVEHRGLV-NLLAWLQERYGLTAGDRVLQFASFS----FDA-SVWEIF-PPLLSGAT 161

Query: 255 VVMMNRFELR---AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKL-QLRAVMTA 310
           +V+     LR   A  + L  H +T   +VP    SL++  ++D  + + L  LR V+  
Sbjct: 162 LVLAPPEVLRDPEALAELLREHRITVLHLVP----SLLR-ALLDALEPAALPSLRLVIVG 216

Query: 311 AAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLE 370
              L  +L+  + + FPG ++  AYG TE + + +TY +            +G  + N  
Sbjct: 217 GEALPAELVRRWRELFPGARLVNAYGPTE-TTVDVTYHEVDPDDLDGGSVPIGRPIANTR 275

Query: 371 VKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLH-------TGDI 423
           V  ++ E  + +P   PGEL +    V +GY N  E TA     + +         TGD+
Sbjct: 276 VYVLD-EDLRPVPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDL 334

Query: 424 GYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAA 483
                DG++  + R  + +K +G+++   E+EA LL HP V +A VV+  D    +   A
Sbjct: 335 ARWLPDGNLEFLGRADDQVKIRGYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVA 394

Query: 484 CVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRR 532
            VV    A+    ++  F+A  +  Y        +D +P + +GK+ R+
Sbjct: 395 YVVPAAGAELDAAELRAFLAERLPDYMVPSAFVVLDALPLTPNGKVDRK 443

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score =  145 bits (367), Expect = 8e-38
 Identities = 122/516 (23%), Positives = 220/516 (42%), Gaps = 59/516 (11%)

Query: 46  AELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
           A L  +K+A  E  + +  TY          A  L     +   + I+ L N  E+  + 
Sbjct: 11  ASLQPNKIAIKE--NDRVLTYKDWFESVCKVANWLNEKESKNKTIAIL-LENRIEFLQLF 67

Query: 106 LGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIE 165
            G   AG      +      ELK+++  ++A +IV+       +      +I + E    
Sbjct: 68  AGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEIDE---- 123

Query: 166 SAINWSELIEAADKAGNNFSNDDDVKQTDLWI---------SKGVMLTHRNLVANLCSTL 216
               W  +IE        ++  ++V+    ++          K  +   ++ + +    +
Sbjct: 124 ----WKRMIEKYLPT---YAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNV 176

Query: 217 --FSVVPEMIGQVTTLGLIP--FFH---IYGITGICCATLRNKGKVVMMNRFELRAFLDA 269
             F +  E    V    LI     H   +YG      +TL     V +M +F     LD 
Sbjct: 177 HDFHMKRE--DSV----LIAGTLVHSLFLYG----AISTLYVGQTVHLMRKFIPNQVLDK 226

Query: 270 LITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGV 329
           L T  ++    VP ++ SL K    +    +K++   ++++ A    +     +  FP  
Sbjct: 227 LETENISVMYTVPTMLESLYK---ENRVIENKMK---IISSGAKWEAEAKEKIKNIFPYA 280

Query: 330 QVQEAYGLTEHSCIT-LTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPG 388
           ++ E YG +E S +T L   +        + NSVG    N++V+  N E G+ +     G
Sbjct: 281 KLYEFYGASELSFVTALVDEESER-----RPNSVGRPFHNVQVRICN-EAGEEVQKGEIG 334

Query: 389 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQ 448
            + V+S     GY       AR ++ +GW+   D+GY D++G I+IV R K +I + G  
Sbjct: 335 TVYVKSPQFFMGYII-GGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGIN 393

Query: 449 VAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVAT 508
           + P E+E++L  HP+V++  V+ +PD   GE P A +  +   ++    +  F    +++
Sbjct: 394 IFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSATKQQ----LKSFCLQRLSS 449

Query: 509 YKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK 544
           +K  +  HFVD IP ++SGKI R   K   +E   K
Sbjct: 450 FKIPKEWHFVDEIPYTNSGKIARMEAK-SWIENQEK 484

Length = 487

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  144 bits (365), Expect = 3e-37
 Identities = 91/293 (31%), Positives = 149/293 (50%), Gaps = 27/293 (9%)

Query: 258 MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQ---LRAVMTAAAPL 314
           + RF+ +  L  L  + +T     P +   LV+       DL+  +   LR  +T   PL
Sbjct: 250 LPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQ------DLTSYKFKSLRHCVTGGEPL 303

Query: 315 APDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFI 374
            P++L  ++ +  G+ + E YG TE   I   +          K  S+G   P  +V+ I
Sbjct: 304 NPEVLEQWKAQ-TGLDLYEGYGQTETGLICANF-----KGMKIKPGSMGKASPPYDVQII 357

Query: 375 NPETGKSLPSNTPGELCVRSQ-----CVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDD 429
           + + G  LP  T G++ +R +     C+   Y +N E+TA TI  + ++ TGD G +D+D
Sbjct: 358 D-DNGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGIMDED 415

Query: 430 GDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP 489
           G  + V R  ++I   G+++ P E+E+ L+ HP+V ++AVVS PD   GE+  A VV+ P
Sbjct: 416 GYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFVVLAP 475

Query: 490 NAKESEDD-----IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
                + +     + + V S  A YK  R + FV  +PK+ +GKI R  L+DK
Sbjct: 476 QFLSHDPEQLTKELQEHVKSVTAPYKYPRKVEFVQELPKTITGKIKRNELRDK 528

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  142 bits (359), Expect = 8e-37
 Identities = 108/352 (30%), Positives = 169/352 (48%), Gaps = 42/352 (11%)

Query: 199 KGVMLTHRNLVANLCSTLFSVVPEMIGQ--------VTTLGLIPFFHIYG-ITGICCATL 249
           KGV+L+ R + A+L         + + +        V   GL P FH++G + G+    L
Sbjct: 144 KGVVLSRRAIAADL---------DALAEAWQWTADDVLVHGL-PLFHVHGLVLGVLGP-L 192

Query: 250 RNKGKVVMMNRFELRAFLDALITH-EVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVM 308
           R   + V   R    A+  AL     + F   VP +   +  DP      L   +L    
Sbjct: 193 RIGNRFVHTGRPTPEAYAQALSEGGTLYFG--VPTVWSRIAADPEAAR-ALRGARLLVSG 249

Query: 309 TAAAPLAPDLLSSFEK--KFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFIL 366
           +AA P  P     F++     G +  E YG+TE + ITL+         G     VG  L
Sbjct: 250 SAALP-VPV----FDRLAALTGHRPVERYGMTE-TLITLSTRADGERRPGW----VGLPL 299

Query: 367 PNLEVKFINPETGKSLPSN--TPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIG 424
             +E + ++ E G  +P +  T GEL VR   +  GY N  + TA     +GW  TGD+ 
Sbjct: 300 AGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVA 358

Query: 425 YIDDDGDIFIVDRIK-ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAA 483
            +D DG   IV R   +LIK  G+++   E+E  LL HP V +AAVV +PD++ G+   A
Sbjct: 359 VVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVA 418

Query: 484 CVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
            VV       + D+++DFVA  ++ +K+ R + FVD +P++  GK++++ L 
Sbjct: 419 YVV--GADDVAADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLL 468

Length = 471

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score =  142 bits (360), Expect = 1e-36
 Identities = 124/482 (25%), Positives = 188/482 (39%), Gaps = 71/482 (14%)

Query: 54  AFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG 113
           A V     +  T  +        A  L  LGLR G VV +   N   Y    L +  AGG
Sbjct: 23  AVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGG 82

Query: 114 VFSGANPTAHASELKKQVDAADAKLIV---SYAPIYEKVKGLGLPII---VLGEERIESA 167
           + +  N      E K  +      ++V   + +  YE+++   LP +   V  E    S 
Sbjct: 83  IVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSV 142

Query: 168 INWSELIEAADKAGNNFSNDDDVKQTDL--------WIS----------------KGVML 203
                         N+F   + +KQ  L        W                  KGV +
Sbjct: 143 FI----------FLNSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTI 192

Query: 204 THRNLVA-NLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFE 262
           +H  L+  +L         E       L   P  HI G++    A L      V++ +F+
Sbjct: 193 SHSALIVQSLAKIAIVGYGEDD---VYLHTAPLCHIGGLSS-ALAMLMVGACHVLLPKFD 248

Query: 263 LRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSF 322
            +A L A+  H VT    VP ++  L+              +R ++     L+  LL   
Sbjct: 249 AKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDA 308

Query: 323 EKKFPGVQVQEAYGLTEHSCITLT------------------YGDPANPSAGSKKNS-VG 363
           +K FP  ++  AYG+TE +C +LT                       + S    +   VG
Sbjct: 309 KKLFPNAKLFSAYGMTE-ACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVG 367

Query: 364 FILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDI 423
              P++E+K    E      S+  G +  R   VM GY+    ETA  +  +GWL TGDI
Sbjct: 368 KPAPHVELKIGLDE------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDI 421

Query: 424 GYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAA 483
           G+ID  G+++++ R  + IK  G  V P E+EA+L  HP V    VV +PD    E+  A
Sbjct: 422 GWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVA 481

Query: 484 CV 485
           CV
Sbjct: 482 CV 483

Length = 563

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score =  141 bits (356), Expect = 4e-36
 Identities = 137/524 (26%), Positives = 220/524 (41%), Gaps = 46/524 (8%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
            L D +   A  Y D +A +     + ++Y ++ +     A  L  LG+++G   +V LP
Sbjct: 24  PLTDILRDQAARYPDAIAIICG--NRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLP 81

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV--------SYAPIYEK 148
           N+AE+ IV   ++  G     A  +   SEL       +  L +         Y     +
Sbjct: 82  NIAEFYIVFFALLKLGVAPVLALFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQ 141

Query: 149 VKGLGLP----IIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTD---LWISKGV 201
           ++   LP    IIV G+        W E      K     S++    Q         K +
Sbjct: 142 LQ-SKLPTLRNIIVAGQTGEAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLI 200

Query: 202 MLTHRNLVANLCSTLFSV-VPEMIGQVTTLGLIPFFHIY-----GITGICCATLRNKGKV 255
             TH +      S   SV +  +  Q   L  +P  H Y     G  G+  A     G V
Sbjct: 201 PRTHNDYYY---SVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYA----GGCV 253

Query: 256 VM-MNRFELRAFLDALI-THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAP 313
           V+  +      F   LI  H+VT   +VPP +   ++       DLS L+L  +    A 
Sbjct: 254 VLAPDPSPTDCF--PLIERHKVTVTALVPPAVALWMQAASKSRADLSSLKL--LQVGGAK 309

Query: 314 LAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKF 373
            +          F G Q+Q+ +G+ E         DPA     ++      + P+ EV+ 
Sbjct: 310 FSAAAARRVPAVF-GCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRP---MSPDDEVRV 365

Query: 374 INPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIF 433
           ++ + G  +     G L  R     +GYY   E  A   D  G+ +TGD+  +  +G I 
Sbjct: 366 VD-DHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIV 424

Query: 434 IVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAA-CVVMNPNAK 492
           +V R K+ I   G ++A  E+E +LL HP+V DAA+VS+PDE  GE   A  VV +P  K
Sbjct: 425 VVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPALK 484

Query: 493 ESEDDIMDFV-ASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
            ++  +  F+    +A YK    + FVD +P +  GK+ ++ L+
Sbjct: 485 AAQ--LRRFLRERGLAEYKLPDRVEFVDSLPLTAVGKVDKKALR 526

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  140 bits (356), Expect = 5e-36
 Identities = 72/211 (34%), Positives = 104/211 (49%), Gaps = 18/211 (8%)

Query: 290 KDPIVDEFDLSKLQ------LRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCI 343
             P+ D+    K++      +R +++  APL+PD    F +   G  V + YGLTE    
Sbjct: 251 ASPLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQE-FLRVALGCPVLQGYGLTETCAG 309

Query: 344 TLTYGDPANPSAGSKKNSVGFILPNLEVKFIN-PETGKSLPSNTP-GELCVRSQCVMQGY 401
             T  DP + + G     VG  LP  E+K ++ PE G     + P GE+C+R   V +GY
Sbjct: 310 G-TLSDPGDTTTGH----VGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGY 364

Query: 402 YNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLT 460
           Y N E+TA   D++GW HTGDIG    DG + I+DR K L K  +G  VA  +LE I  +
Sbjct: 365 YKNPEKTAEAFDEDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKS 424

Query: 461 HPSVEDAAVVSLPDEEAGEIPAACVVMNPNA 491
            P V+   V     +       A VV + + 
Sbjct: 425 SPLVDQICVYGDSLKSF---LVAIVVPDEDV 452

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score =  139 bits (353), Expect = 8e-36
 Identities = 128/517 (24%), Positives = 225/517 (43%), Gaps = 50/517 (9%)

Query: 46  AELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
            E    K AF++ +S  + +Y ++    R    ALR LG+++ + V++++ +  ++ I  
Sbjct: 15  VEGRGGKTAFIDDIS--SLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAF 72

Query: 106 LGIMAAGGVFSGANPTAHASELKKQV-DAADAKLIVSYA--PIYEKVKGLGLP----IIV 158
           LG + AG V    N    A +    + D+    + VS    P+ +   G   P     +V
Sbjct: 73  LGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALG-KSPHLEHRVV 131

Query: 159 LGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWIS------KGVMLTHRNLVANL 212
           +G       +  +EL+    +     +   D     L+ S      KGV+ TH N     
Sbjct: 132 VGRPE-AGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPY--- 187

Query: 213 CSTLFSVVPEMIGQVTTLGL---------IPFFHIYGI-TGICCATLRNKGKVVMMNRFE 262
                    E+  +  TLG+            F  YG+   +          V+M  R  
Sbjct: 188 ------WTAELYAR-NTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPT 240

Query: 263 LRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSF 322
             A  D L  H+ T    VP +  +++ DP +   D  +++LR   +A   L  ++   +
Sbjct: 241 PDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAED--QVRLRLCTSAGEALPAEVGQRW 298

Query: 323 EKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSL 382
           + +F GV + +  G TE   I L+     N     +  + G  +P   ++ +  + G+ +
Sbjct: 299 QARF-GVDIVDGIGSTEMLHIFLS-----NLPGDVRYGTSGKPVPGYRLRLVG-DGGQDV 351

Query: 383 PSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELI 442
            +  PGEL +        Y+NN  +T  T  +  W  +GD    +DDG      R  +++
Sbjct: 352 AAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDML 410

Query: 443 KYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKE---SEDDIM 499
           K  G  V+P E+E+ L+ HP+V +AAVV + DE+    P A +V+ P        E ++ 
Sbjct: 411 KVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELK 470

Query: 500 DFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
           + V   +A YK  R + FVD +PK+ +GKI R  L++
Sbjct: 471 EHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLRE 507

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score =  138 bits (350), Expect = 2e-35
 Identities = 135/501 (26%), Positives = 210/501 (41%), Gaps = 77/501 (15%)

Query: 50  ADKVAFVEAVSGKAYTYAQVARDTRGFAKALRS-LGLRKGQVVIVVLPNVAEYGIVALGI 108
            ++  F      + +TY  +       A  L   LG+  G  V++   N        L +
Sbjct: 49  GNRPCFRTF--EETWTYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAV 106

Query: 109 MAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAI 168
           + AG +     P   A EL   VD A                            RI  A+
Sbjct: 107 LKAGAIVVTTMPLLRAKELTTIVDKA----------------------------RITHAL 138

Query: 169 NWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVT 228
               L  A D A   F++      T L   KG M  HR+++A +C       P  + Q T
Sbjct: 139 CDKRLTAADDVALIGFTSG----TTGL--PKGTMHFHRDILA-ICDAF----PRHVLQPT 187

Query: 229 T----LGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTF---APIV 281
                +G  P    +G+ G+    LR     V++ +      L A+  H  T    AP  
Sbjct: 188 PDDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTA 247

Query: 282 PPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE-- 339
              +L  VK      FD+S   LR  ++A   L   +   + ++  G+++ +  G TE  
Sbjct: 248 YRAMLIKVKA-----FDIS--SLRKCVSAGETLPAKVWQDWYER-TGLKIIDGIGATEML 299

Query: 340 HSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVR--SQCV 397
           H  I+    + A P A       G  +P  E + ++ + G  +P    G L VR  + C 
Sbjct: 300 HIFISANE-ENAKPGA------TGKPVPGYEARIVD-DQGNEVPRGEAGRLAVRGPTGC- 350

Query: 398 MQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAI 457
               Y ++E     + ++GW  TGDI   D+DG    V R  ++I   G+ +A  E+E  
Sbjct: 351 ---RYLDDERQQEYV-RDGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDA 406

Query: 458 LLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDD---IMDFVASNVATYKKVRV 514
           LLTHP V + AV+ +PDEE G+I  A +V+    K +E     + DFV + +A YK  R 
Sbjct: 407 LLTHPDVAECAVIGVPDEERGQIVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPRE 466

Query: 515 LHFVDGIPKSHSGKIMRRILK 535
           ++FVD +PK+ +GKI R  L+
Sbjct: 467 INFVDALPKTQTGKIQRFRLR 487

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score =  138 bits (349), Expect = 2e-35
 Identities = 127/496 (25%), Positives = 193/496 (38%), Gaps = 57/496 (11%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH 123
            TY ++AR     A ALR+ G+  G +V VV+P   E  +  LGI+ AG  +   +P   
Sbjct: 13  LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQP 72

Query: 124 ASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNN 183
           A      +  A A+ +++         GL  P        +      +    A       
Sbjct: 73  AERRAAILARAGARAVLT-------DPGLAQPEEAPDLLVVADD-AAAAESPAPPPP--- 121

Query: 184 FSNDDDVKQTDL----WIS------KGVMLTHRNLVANLCSTL---FSVVPEMIGQVTTL 230
                 V   DL    + S      KGVM+THR  V N    +   F V P        L
Sbjct: 122 -----RVDPDDLAYVIFTSGSTGEPKGVMITHRAAV-NTILDVNRRFGVGP----ADRVL 171

Query: 231 GLIPFFH---IYGITGICCATLRNKGKVVMMNRFELR---AFLDALITHEVTFAPIVPPI 284
            L        +Y I G     L     +V+ +    R    + + +  H VT    VP +
Sbjct: 172 ALSALHFDLSVYDIFG----ALSAGAALVLPDEARRRDPDHWAELVQRHGVTVWNSVPAL 227

Query: 285 ILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCIT 344
           +  L+     ++       LR VM +   +  DL        PG ++    G TE S I 
Sbjct: 228 MDMLL--TYAEDAARLLPSLRLVMLSGDWIPLDLPRRLRALAPGARLVSLGGATEAS-IW 284

Query: 345 LTYGDPANPSAGSKKNSV--GFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYY 402
             Y    +     +  S+  G  LPN +   ++ E G+  P   PGEL +    V  GY+
Sbjct: 285 SIYYPIDDVDPDWR--SIPYGKPLPNQKFYVLD-EDGRDCPDWVPGELYIGGVGVALGYW 341

Query: 403 NNEEETART--IDKNG--WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAIL 458
            + E TA      + G     TGD+G    DG I  + R    +K +G++V   E+EA L
Sbjct: 342 GDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVKIRGYRVELGEIEAAL 401

Query: 459 LTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFV 518
             HP V+ A VV + D  A  + AA VV    A      +   +A  +  Y        +
Sbjct: 402 ARHPGVQRAVVVVVGDGGAKAL-AAFVVAEDGAAVDAAVLRAALAELLPAYMVPSRFVVL 460

Query: 519 DGIPKSHSGKIMRRIL 534
           D +P + +GK+ R+ L
Sbjct: 461 DALPLTANGKVDRKAL 476

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  139 bits (352), Expect = 3e-35
 Identities = 94/465 (20%), Positives = 175/465 (37%), Gaps = 42/465 (9%)

Query: 13  LAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARD 72
           L      E    +   A P+P  +T+     + A    D VA V    G+  TYA++   
Sbjct: 205 LPLLLPSEREVWNA-LAAPIPLRLTIHLLFEEQAATTPDAVALVRG--GQQLTYAELDAR 261

Query: 73  TRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVD 132
               A+ L SLG+  G+ V ++     E  +  L ++ AG  +   +P   A  L   ++
Sbjct: 262 ANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILE 321

Query: 133 AADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNF-------S 185
            +   L+++ A +      +GLP + L +   E     ++ I  A              S
Sbjct: 322 DSRPTLLLTQAHLRVDD--VGLPGLALDDALSEIPD--TDPIPQALLGDALAYIIYTSGS 377

Query: 186 NDDDVKQTDLWISKGVMLTHRNLV---ANLCSTLFSVVPEMIGQVTTLGL-IPFFHIYGI 241
                        KGV + HR L     +  +       + +  + +L      F I+G 
Sbjct: 378 TGQP---------KGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFG- 427

Query: 242 TGICCATLRNKGKVVM---MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFD 298
                  L    ++V+   + + +  A L+ L    +T   +VP ++  L+   +  +  
Sbjct: 428 ------ALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLI 481

Query: 299 LSKLQLRAVMTAAAPLAPDLLS-SFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGS 357
               +LR +++    L   L+    +      ++   YG TE + +       +      
Sbjct: 482 SPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEAT-LDAPSFPISAELESR 540

Query: 358 KKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGW 417
               +G  + N ++ +I  +  + LP   PGEL +    +  GY N  + TA        
Sbjct: 541 V--PIGRPVANTQL-YILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRL 597

Query: 418 LHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHP 462
             TGD+     DG +  + R    +K +GF++   E+EA L   P
Sbjct: 598 YRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642

Length = 642

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score =  137 bits (346), Expect = 8e-35
 Identities = 131/514 (25%), Positives = 206/514 (40%), Gaps = 40/514 (7%)

Query: 51  DKVAFV----EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVAL 106
           DK A         + + ++Y ++       A  L  LG+ +G VV   LPN  E+  + L
Sbjct: 37  DKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYL 96

Query: 107 GIMAAGGVFSGANPTAHASELKKQVDAADAKLIV------------SYAPIYEKVKGLGL 154
                G V +   P     EL   ++ AD+K+ V                +  K+  L  
Sbjct: 97  ACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQ 156

Query: 155 PIIVLGE-----ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWIS------KGVML 203
            +++ G+     +R+       +  +AA        + DDV Q  ++ S      KGVM 
Sbjct: 157 VVVIDGDGDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQL-IYTSGTTGEPKGVMH 215

Query: 204 THRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFEL 263
           T   L +N+    ++   E+ G    L   P  H  G        L      V+ + +  
Sbjct: 216 TANTLFSNIHP--YAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNP 273

Query: 264 RAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFE 323
               + +    VTF     P +  L +   V E       L   + A AP+   L+    
Sbjct: 274 ARAAELIRETGVTFTMASTPFLTDLCR--AVKESGAPVPSLFTFLCAGAPIPGILVERAW 331

Query: 324 KKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLP 383
           +   G  +  A+G+TE+  +T+T  D A   A +   + G  LP +EVK I+   G  L 
Sbjct: 332 ELL-GALIVSAWGMTENGAVTVTEPDDALEKAST---TDGRPLPGVEVKVIDAN-GAKLS 386

Query: 384 SNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIK 443
               G L VR      GY       +   D  GW  TGD+ + D +G I I  R K++I 
Sbjct: 387 QGETGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRINGRSKDVII 444

Query: 444 YKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV- 502
             G  +   E+E +L  HP+V   A+V+ PDE  GE   A VV  P        ++ F+ 
Sbjct: 445 RGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLK 504

Query: 503 ASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
           A  VA       L  VD +P + +GKI +  L++
Sbjct: 505 AQKVALQYIPERLEVVDALPATPAGKIQKFRLRE 538

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score =  135 bits (342), Expect = 2e-34
 Identities = 116/511 (22%), Positives = 208/511 (40%), Gaps = 65/511 (12%)

Query: 51  DKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA 110
           D +A V     ++ TYA++       A+ LR+ G+  G VV ++L    E  +  L I+ 
Sbjct: 2   DAIALVY--GDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILK 59

Query: 111 AGGVF---SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEE-RIES 166
           AG  +     A P    + +   ++ + A+++++   +    +   LP+++L EE   E 
Sbjct: 60  AGAAYVPLDPAYPAERLAFM---LEDSGARVLLTDESLAPLARADQLPLVILEEELDAED 116

Query: 167 AINWSELIEAADKAGNNFSNDDDVKQTDLWIS------KGVMLTHRNLVANLCSTLFSVV 220
           A   +  ++A D A   ++            S      KGV + HR +V  + +T +  +
Sbjct: 117 AGPPAPAVDADDLAYVMYT------------SGSTGRPKGVAVPHRGVVRLVRNTNYIAL 164

Query: 221 PEMIGQVTTLGLIPF------FHIYGITGICCATLRNKGKVVMMNR---FELRAFLDALI 271
                    L L P       F I+G        L N G++V++++    +       + 
Sbjct: 165 DP---DDRFLQLSPLSFDASTFEIWG-------ALLNGGRLVLIDKETLLDPDRLARLIA 214

Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQV 331
              VT   +   +  + + D   +        LR ++     L+P  +       PG+++
Sbjct: 215 EQGVTVLWLTAAL-FNQLVDEDPEALA----GLRQLLVGGDVLSPAHVRRVLAACPGLRL 269

Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSV--GFILPNLEVKFINPETGKSLPSNTPGE 389
              YG TE++  +  +       A     S+  G  +PN  V  ++ E G+ +P   PGE
Sbjct: 270 INGYGPTENTTFSTCHVITRLDEAAD---SIPIGRPIPNTTVYILD-EEGQPVPIGVPGE 325

Query: 390 LCVRSQCVMQGYYNNEEETAR----TIDKNG--WLHTGDIGYIDDDGDIFIVDRIKELIK 443
           L V    +  GY N  E TA          G     TGD+     DG+I  + RI   +K
Sbjct: 326 LYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVK 385

Query: 444 YKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVA 503
            +GF++   E+E  LL HP V +AAV+    E+A         +         ++   +A
Sbjct: 386 IRGFRIELGEIEQALLQHPGVREAAVL--VREDAAGDKRLVAYVVARGALDAAELRAHLA 443

Query: 504 SNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
             +  Y        +D +P + +GK+ RR L
Sbjct: 444 ERLPAYMVPAAFVVLDELPLTANGKVDRRAL 474

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  134 bits (339), Expect = 3e-34
 Identities = 84/352 (23%), Positives = 142/352 (40%), Gaps = 33/352 (9%)

Query: 199 KGVMLTHRNLVANL--CSTLFSVVPEMIGQVTTLGLIPF------FHIYGITGICCATLR 250
           KGV ++H NL + L      F +              PF      F ++         L 
Sbjct: 113 KGVQISHANLASFLDWMVEDFDLTE----GDVFSNQAPFSFDLSVFDLFP-------ALA 161

Query: 251 NKGKVVMMNRFELRAFLD---ALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKL-QLRA 306
           +   + ++ + ++   L     L  H +T    VP     L+      E +   L  LR 
Sbjct: 162 SGATLYVIPKEQIADPLALFEFLKEHGLTVWVSVPSFASLLLLSR---ELNPESLPSLRT 218

Query: 307 VMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFIL 366
            +     L   L  +  ++FP  ++   YG TE +     Y     P + ++   +G+  
Sbjct: 219 FLFCGEVLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPK 278

Query: 367 PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETAR---TIDKNGWLHTGDI 423
           P L    ++ E G+ +P    GEL +    V  GY NN E+TA+     +   W  TGD+
Sbjct: 279 PGLRALILD-EDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDL 337

Query: 424 GYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAG-EIPA 482
            Y++DDG +  + R    IK  G+++   E+EA L   P VE+A V+ +P  E    + A
Sbjct: 338 VYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVA 397

Query: 483 ACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
             V            +   +   +  Y   R   ++D +P + +GKI R+ L
Sbjct: 398 FVVG--KEGALDTKALKKELKKRLPPYMIPRRFVYLDSLPLNANGKIDRKAL 447

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  133 bits (337), Expect = 5e-34
 Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 14/276 (5%)

Query: 267 LDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKF 326
            D L    VT     P     L+     D     KL+LR   +A  PL P+++  F+   
Sbjct: 171 YDVLERLGVTNFAGSPTAYRMLMAAG-ADAAARIKLKLRVASSAGEPLNPEVVRWFQANL 229

Query: 327 PGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNT 386
            GV + + YG TE       +   A+     +  S+G  LP   +  ++ + G+ L    
Sbjct: 230 -GVTIHDHYGQTETGMPVGNHHALAHEV---RAGSMGLPLPGYRIAVLD-DDGQPLADGE 284

Query: 387 PGELCVRSQ----CVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELI 442
           PG+L +           GY+++ E+TA  I    W  TGD+   D+DG  + + R  ++I
Sbjct: 285 PGQLAIDVASSPLLWFSGYWDDPEKTAELIA-GRWYVTGDLVERDEDGYFWFIGRADDVI 343

Query: 443 KYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN---AKESEDDIM 499
              G+++ P ++E+ LL HP+V +AAVV +PD   GEI  A VV+      + E  +++ 
Sbjct: 344 ISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAEELQ 403

Query: 500 DFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
            FV   ++ +   R + FV  +PK+ SGKI R +L+
Sbjct: 404 LFVKKRLSAHAYPREVEFVPALPKTPSGKIQRFLLR 439

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score =  129 bits (326), Expect = 2e-32
 Identities = 100/499 (20%), Positives = 182/499 (36%), Gaps = 85/499 (17%)

Query: 61  GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANP 120
            +  +YA+       +A ALR+LG++KG VV +++ N  EY +  L +   G V +  N 
Sbjct: 1   DRRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINT 60

Query: 121 TAHASELKKQVDAADAKLIVSYAPIYEKVKG-LGLPIIVLGEERIESAINWSELIEAADK 179
           T     L   ++ +DA+ ++     Y    G  GLP                        
Sbjct: 61  TQRGEVLAHCINVSDARAVIVDPAFYIYTSGTTGLP------------------------ 96

Query: 180 AGNNFSNDDDVKQTDLWISKGVMLTHRNLV--ANLCSTLFSVVPEMIGQVTTLGLIPFFH 237
                              K  +++HR  +    +   L  + P+ +  +     +P +H
Sbjct: 97  -------------------KAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLC----LPLYH 133

Query: 238 IYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEF 297
              +T    + L     + +  +F    F   +  +  T    V  +   L+  P     
Sbjct: 134 SNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEKP-- 191

Query: 298 DLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSC-ITLTYGDPANPSAG 356
           D     LR ++     L PD+   F+++F   ++ E YG TE +      +  P      
Sbjct: 192 DDRDHPLRKIIGNG--LRPDIWDEFKERFGVPRIVEFYGSTEGNVGFINLFNKP------ 243

Query: 357 SKKNSVGFILP-NLE-VKF-------INPETGKSLPSNT--PGELCVRSQCV--MQGYYN 403
               +VG + P  +  VK+       I    G  +       G L           GY +
Sbjct: 244 ---GAVGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTD 300

Query: 404 NEEETARTI-----DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAIL 458
           +E    + +       + + +TGD+   D  G  + VDR+ +  ++KG  V+  E+E +L
Sbjct: 301 DEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVL 360

Query: 459 LTHPSVEDAAV--VSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLH 516
             HP VE+A V  V +P  E G    A + + P A          +   +  Y +   L 
Sbjct: 361 AKHPGVEEANVYGVEVPGTE-GRAGMAALTLAPGAAFDPQAFAAHLDEQLPAYARPLFLR 419

Query: 517 FVDGIPKSHSGKIMRRILK 535
               +  + + K  +  L+
Sbjct: 420 VQAAMETTGTFKYQKTDLR 438

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score =  130 bits (329), Expect = 2e-32
 Identities = 146/544 (26%), Positives = 237/544 (43%), Gaps = 60/544 (11%)

Query: 41  FVLQDAELYADKVAFVEAVSGKA-YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVA 99
           F+ + +E Y ++ + +    GK  +T+ Q        A +L SL + K  VV V+ PN  
Sbjct: 19  FLKRASECYPNRTSII---YGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTP 75

Query: 100 EYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV---SYAPIYEKV------- 149
               +   +  AG V +  N    A+ +   +  A  K++    S+ P+  +V       
Sbjct: 76  AMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSE 135

Query: 150 -KGLGLPIIVLGE----ERIESA-INWSELIEAADKAGNNFSNDDDVKQTDLWIS----- 198
              L LP+I + E    +R  S  +++  LI+  +   +  +    ++     IS     
Sbjct: 136 DSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTS 195

Query: 199 ------KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNK 252
                 KGV+++HR   A L +    +  EM      L  +P FH  G T       R  
Sbjct: 196 GTTADPKGVVISHRG--AYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAARG- 252

Query: 253 GKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLS-KLQLRAVMTAA 311
           G  V M           +  H VT    VP +   L+K    +  DLS +     V+T  
Sbjct: 253 GTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKG---NSLDLSPRSGPVHVLTGG 309

Query: 312 APLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITL--TYGD-----PANPSAGSKKNSVGF 364
           +P    L+   ++   G QV  AYGLTE +   L   + D     P N     K      
Sbjct: 310 SPPPAALVKKVQRL--GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVS 367

Query: 365 ILPNLEVKFINPETGKSLPSN--TPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGD 422
           IL   +V   N ET +S+P +  T GE+ ++   +M+GY  N + T+    K+GWL+TGD
Sbjct: 368 ILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGD 426

Query: 423 IGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPA 482
           +G I  DG + I DR K++I   G  ++  E+E +L  +P V + AVV++P    GE P 
Sbjct: 427 VGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPC 486

Query: 483 ACVVMNPNAKESEDDIMDFVAS--NVATYKKVRVLHFV--------DGIPKSHSGKIMRR 532
           A VV+       ED +   V    ++  Y +  + HF+          +PK+ +GKI++ 
Sbjct: 487 AFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKP 546

Query: 533 ILKD 536
            L+D
Sbjct: 547 KLRD 550

Length = 579

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score =  127 bits (322), Expect = 1e-31
 Identities = 123/544 (22%), Positives = 203/544 (37%), Gaps = 79/544 (14%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
            + D     A+   D+VA V     +  TYA++       A  L + GL  G  V +   
Sbjct: 4   NIADLFEAVADAVPDRVALVCG--DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYAR 61

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV---SYAPIYEKVKGLG 153
           N  EY    LG   A  V    N      EL+  +D +DA  +V    +AP   +V    
Sbjct: 62  NRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLP-R 120

Query: 154 LP----IIVLGEERIES----AINWSELIEAADKAGNNF---SNDDDVKQTDLWI----- 197
           LP    ++V+ +         A+++ + + A      +F   S DD      L++     
Sbjct: 121 LPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGS-PERDFGERSPDD------LYLLYTGG 173

Query: 198 ----SKGVMLTHRNL-VANLCSTLFSVVPEM------------IGQVTTLGLIPFFHIYG 240
                KGVM    ++    L    F+    +               +      P  H  G
Sbjct: 174 TTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAG 233

Query: 241 -ITGICCATLRNKGKVVM--MNRFELRAFLDALITHEVTFAPIVPPIILSLVKD----PI 293
                  A L +   VV+    RF+       +   +V         ++++V D    P+
Sbjct: 234 QWAAF--AALFSGQTVVLLPDVRFDADEVWRTIEREKVN--------VITIVGDAMARPL 283

Query: 294 VDE------FDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTY 347
           +D       +DLS L   A+ +  A  +P +  +  +  P V + ++ G +E        
Sbjct: 284 LDALEARGPYDLSSLF--AIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGT 341

Query: 348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEE 407
                   G  +              ++ +     P +       R   +  GYY + E+
Sbjct: 342 VAKGAVHTGGPR-----FTIGPRTVVLDEDGNPVEPGSGEIGWIARRGHIPLGYYKDPEK 396

Query: 408 TART---IDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSV 464
           TA T   ID   +   GD   ++ DG I ++ R    I   G +V P E+E  L  HP V
Sbjct: 397 TAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDV 456

Query: 465 EDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKS 524
            DA VV +PDE  G+   A V +   A+    ++     S++A YK  R + FVD + +S
Sbjct: 457 ADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIWFVDEVQRS 516

Query: 525 HSGK 528
            +GK
Sbjct: 517 PAGK 520

Length = 533

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score =  125 bits (317), Expect = 6e-31
 Identities = 113/506 (22%), Positives = 204/506 (40%), Gaps = 58/506 (11%)

Query: 61  GKAYTYAQVARDTRGFAKALRSLGLRKGQV-VIVVLPNVAEYGIVALGIMAAGGVFSGAN 119
               ++ +  R +   A ALR+         V V+L N  E+ ++      +G V  G N
Sbjct: 26  DSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLN 85

Query: 120 PTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADK 179
           PT   + L + +  AD +L+++ +   E + GL   + V+  +       W++ + A   
Sbjct: 86  PTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVDSPA----WADELAAHRD 141

Query: 180 AGNNFSNDDDVKQTDLWI----------SKGVMLTHRNLV--ANLCSTLFSVVPEMIGQV 227
           A   F         DL++           K V  THR +     + +  F + P+ +  V
Sbjct: 142 AEPPFR---VADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYV 198

Query: 228 TTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIV-PPIIL 286
           +    +P FH   +       L     + +  +F    FL  +  +  T+A  V  P+  
Sbjct: 199 S----MPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSY 254

Query: 287 SLVKDPIVDEFDLSKLQLRAVM-TAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITL 345
            L      D+ D     LR V     AP     ++ F ++F G  V + +G TE      
Sbjct: 255 VLATPERPDDADNP---LRIVYGNEGAPGD---IARFARRF-GCVVVDGFGSTEGGVAI- 306

Query: 346 TYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLP------------SNTPGELC-V 392
               P  P       ++G + P + +  ++P+TG   P                GEL   
Sbjct: 307 -TRTPDTPPG-----ALGPLPPGVAI--VDPDTGTECPPAEDADGRLLNADEAIGELVNT 358

Query: 393 RSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPA 452
                 +GYYN+ E  A  + + G   +GD+ Y D DG  +   R+ + ++  G  +  A
Sbjct: 359 AGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTA 417

Query: 453 ELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVA--SNVATYK 510
            +E ILL +P   + AV ++PD   G+   A +V+ P AK   D   +F+A   ++   +
Sbjct: 418 PIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQ 477

Query: 511 KVRVLHFVDGIPKSHSGKIMRRILKD 536
               +     +P++ + K+++R L  
Sbjct: 478 WPSYVRVCAELPRTATFKVLKRQLSA 503

Length = 529

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score =  125 bits (315), Expect = 1e-30
 Identities = 90/309 (29%), Positives = 155/309 (50%), Gaps = 21/309 (6%)

Query: 234 PFFHIYGITGICCA-TLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPI---ILSLV 289
           P FH +G + +  A +L     +V   RF+  A LD +  H  T   +VP +   I+ L 
Sbjct: 245 PMFHAWGFSQLVLAASLACT--IVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLP 302

Query: 290 KDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGD 349
            + + + +  S   LR    + + + PD++ +F  +F  V +   Y  TE   I      
Sbjct: 303 AE-VRNRY--SGRSLRFAAASGSRMRPDVVIAFMDQFGDV-IYNNYNATEAGMIAT---- 354

Query: 350 PANPSAGSKK-NSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEET 408
            A P+      ++ G      E++ ++ +  + +P+   G + VR+     GY +    T
Sbjct: 355 -ATPADLRAAPDTAGRPAEGTEIRILDQD-FREVPTGEVGTIFVRNDTQFDGYTSGS--T 410

Query: 409 ARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAA 468
               D  G++ +GD+GY+D++G +F+V R  E+I   G  V P E+E  L THP V +AA
Sbjct: 411 KDFHD--GFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAA 468

Query: 469 VVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGK 528
           V+ + DE+ G+  AA VV+ P A  + + +   V  N+A YK  R +  +D +P+  +GK
Sbjct: 469 VIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGK 528

Query: 529 IMRRILKDK 537
           I+RR L+ +
Sbjct: 529 ILRRELQAR 537

Length = 537

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score =  123 bits (311), Expect = 3e-30
 Identities = 91/395 (23%), Positives = 159/395 (40%), Gaps = 73/395 (18%)

Query: 199 KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM 258
           KGV+LTH+NL+ N+ + + +   E+  +   L  +P  H  G+ G             +M
Sbjct: 122 KGVILTHKNLLTNIEAIIEAA--EITSEDVFLSWMPLTHDMGLIGFHLTPTALGINQYLM 179

Query: 259 --NRFELRAFLDALITHE----VTFAP-IVPPIILSLVKDPIVDEFDLSKLQLRAVMTAA 311
               F  R  L      +    +  +P      +L   K   + ++DLS   +R +   A
Sbjct: 180 PTRLFIRRPLLWLDKASQHRATILSSPNFGYKYLLKHFKTEKIIDWDLS--SVRLIFNGA 237

Query: 312 APLAPDLLSSFEKKFPGVQVQE-----AYGLTEHS---------------CI---TLTYG 348
            P++ DL   F +K     ++       YGL E +               C+    L  G
Sbjct: 238 EPISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVG 297

Query: 349 DPANPSAGSKKNSVGFI-----LPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYN 403
                      +++ F+     +   E++ ++ + G+ LP  T G + ++   V  GYYN
Sbjct: 298 VKIIEIDPKNSDAISFVEVGSPIDGCEIRIVD-DAGEVLPDRTIGHIQIKGDNVTSGYYN 356

Query: 404 NEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPS 463
           N E T ++I  +GWL TGD+G++  +G + I  R K++I   G    P ++E +      
Sbjct: 357 NPEATKKSITPDGWLKTGDLGFL-RNGRLVITGRAKDIIIVNGQNYYPHDIERV------ 409

Query: 464 VEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASN------VATYKKVR---- 513
                   +   + G + AAC V   + KE  ++++ FV              K++    
Sbjct: 410 -----AEQVEGIKLGRV-AACGV--YDEKEQSEEVVIFVEYRQSLDDFTPLALKIKRHVN 461

Query: 514 -----VLHFV---DGIPKSHSGKIMRRILKDKMLE 540
                 +  V     IPK+ SGKI R  L  + L 
Sbjct: 462 KKMGLNIDHVIPVRSIPKTTSGKIQRYKLAQQFLN 496

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score =  123 bits (311), Expect = 6e-30
 Identities = 77/257 (29%), Positives = 120/257 (46%), Gaps = 30/257 (11%)

Query: 297 FDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEH-SCITLTYGDPANPSA 355
           +DLS L  RA+  A   L    L   EK   GV V + +  TE    IT      AN   
Sbjct: 342 YDLSSL--RALFLAGERLDSPTLEWIEKTL-GVPVIDHWWQTETGWPIT------ANCVG 392

Query: 356 ----GSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVR---SQCVMQGYYNNEEET 408
                 K  S G  +P  +V+ ++ ETG+ L     G + ++       +   + ++E  
Sbjct: 393 LELLPIKPGSPGKPVPGYDVQVLD-ETGEELGPGELGNIVIKLPLPPGCLLTLWGDDERF 451

Query: 409 ARTI--DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVED 466
            +       G+  TGD GY D+DG +F++ R  ++I   G +++  E+E  +L HP V +
Sbjct: 452 KKLYLNKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAE 511

Query: 467 AAVVSLPDEEAGEIPAACVVMNPNAKESEDD----IMDFVASN---VATYKKVRVLHFVD 519
            AVV + DE  G++P   VV+  + K   D     I+  V      VA ++ V    FV 
Sbjct: 512 CAVVGVRDELKGQVPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAFRNV---VFVK 568

Query: 520 GIPKSHSGKIMRRILKD 536
            +PK+ SGKI+RR L+ 
Sbjct: 569 RLPKTRSGKILRRTLRK 585

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score =  119 bits (301), Expect = 7e-29
 Identities = 121/510 (23%), Positives = 228/510 (44%), Gaps = 47/510 (9%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH 123
           YTY    R  +  A+AL +LG+  G  V  +  N   +     G+  +G V    NP   
Sbjct: 40  YTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLF 99

Query: 124 ASELKKQVDAADAKLI---VSYAPIYEKVKGLGLP-----IIVLGEERIESA----INWS 171
             ++   V+ A+ + +   +++ P+ + +     P     + +     + +     + + 
Sbjct: 100 PEQIAYIVNHAEDRYVLFDLTFLPLVDALAP-QCPNVKGWVAMTDAAHLPAGSTPLLCYE 158

Query: 172 ELIEAADKAGNNFSNDDDVKQTDLWIS------KGVMLTHRNLVANLCSTLFSVVPEMIG 225
            L+ A D   +    D++   +  + S      KG + +HR+ V +      + +P+ +G
Sbjct: 159 TLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLH---AYGAALPDAMG 215

Query: 226 ---QVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHE-VTFAPIV 281
              +   L ++P FH+    G+  +      K+V+         L  LI  E VTF+  V
Sbjct: 216 LSARDAVLPVVPMFHV-NAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGV 274

Query: 282 PPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHS 341
           P + L L+          S L+   +  +A P  P ++ +FE ++ GV+V  A+G+TE S
Sbjct: 275 PTVWLGLLNHMREAGLRFSTLRRTVIGGSACP--PAMIRTFEDEY-GVEVIHAWGMTEMS 331

Query: 342 CI----TLTYGDPANPSAGSKK--NSVGFILPNLEVKFINPETGKSLP--SNTPGELCVR 393
            +     L +     P    +K     G ++  +++K +  + G+ LP      G+L VR
Sbjct: 332 PLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDD-GRELPWDGKAFGDLQVR 390

Query: 394 SQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAE 453
              V+  Y+  +         +GW  TGD+  ID DG + I DR K++IK  G  ++  +
Sbjct: 391 GPWVIDRYFRGDASPLV----DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSID 446

Query: 454 LEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR 513
           +E + + HP+V +AA ++    +  E P   VV  P A+ + ++++ F    VA +    
Sbjct: 447 IENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIPD 506

Query: 514 VLHFVDGIPKSHSGKI----MRRILKDKML 539
            + FVD IP + +GK+    +R   +D +L
Sbjct: 507 DVVFVDAIPHTATGKLQKLKLREQFRDYVL 536

Length = 539

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score =  118 bits (298), Expect = 1e-28
 Identities = 83/280 (29%), Positives = 133/280 (47%), Gaps = 23/280 (8%)

Query: 273 HEVTFAPIVPPIILSLVK--DPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPG-- 328
           H+VT   + P +I +L    D  V+  DLS   LR + +   P  P+      ++  G  
Sbjct: 192 HKVTHLGLSPTLIRALRAHGDAPVEGHDLS--SLRVLGSTGEPWDPESWLWLFERVGGGR 249

Query: 329 VQVQEAYGLTEHS-CITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTP 387
             +    G TE S  I      P  P    K  S     P ++   ++ + G+ +     
Sbjct: 250 APIINYSGGTEISGGILGNV--PIRPI---KPCSFNGPSPGMDADVVDED-GRPVR-GEV 302

Query: 388 GELCVRSQCV-M-QGYYNNEE---ETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELI 442
           GEL VR+    M +G++ + E   ET  +     W+H GD   +D+DG  +I+ R  + I
Sbjct: 303 GELVVRAPWPGMTRGFWRDPERYLETYWSRFPGVWVH-GDWALVDEDGYWYILGRSDDTI 361

Query: 443 KYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDD---IM 499
           K  G +V PAE+E++L +HP+V +AA + +PD   GE     VV+ P    S      + 
Sbjct: 362 KVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPGVTPSAALEAELA 421

Query: 500 DFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML 539
           D V   +    + R +HFV  +PK+ +GKIMRR+++   L
Sbjct: 422 DHVGDALGKPFRPREVHFVSDLPKTRNGKIMRRVIRAAYL 461

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score =  117 bits (295), Expect = 8e-28
 Identities = 74/278 (26%), Positives = 127/278 (45%), Gaps = 22/278 (7%)

Query: 273 HEVTFAPIVPPIILSLVK--DPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPG-- 328
           H+VT     P  I +L++  D  V + DLS   LR + +   P+ P+    + K      
Sbjct: 329 HKVTIFYTAPTAIRALMRLGDEWVKKHDLS--SLRLLGSVGEPINPEAWMWYYKVVGKER 386

Query: 329 VQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLP-SNTP 387
             + + +  TE   I +T   P   +  +K  S       +E   ++ E G  +      
Sbjct: 387 CPIVDTWWQTETGGIMIT---PLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEG 442

Query: 388 GELCVR----SQCVMQGYYNNEEETARTIDKN--GWLHTGDIGYIDDDGDIFIVDRIKEL 441
           G L ++        ++  Y + E    T      G+  TGD    D DG I+I  R+ ++
Sbjct: 443 GYLVIKQPWPGM--LRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDV 500

Query: 442 IKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED---DI 498
           I   G ++  AE+E+ L++HP+V +AAVV +PD+  G+   A V +    +  ++   ++
Sbjct: 501 INVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKEL 560

Query: 499 MDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
              V   +    K   + FV G+PK+ SGKIMRR+L+ 
Sbjct: 561 RKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRK 598

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score =  115 bits (290), Expect = 1e-27
 Identities = 87/291 (29%), Positives = 146/291 (50%), Gaps = 18/291 (6%)

Query: 253 GKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVK--DPIVDEFDLSKLQLRAVMTA 310
           G VV+  RF+ +A L  +  + +T   +VP + + L+K    +   +D+S   LRAV+ A
Sbjct: 221 GTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVS--SLRAVIHA 278

Query: 311 AAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVG-FILPNL 369
           AAP   D+  +    + G  V E Y  TE   +T       +P   +   SVG  +L +L
Sbjct: 279 AAPCPVDVKHAM-IDWLGPIVYEYYSSTEAHGMTFI----DSPDWLAHPGSVGRSVLGDL 333

Query: 370 EVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNG--WLHTGDIGYID 427
               I  + G  LP+   G +      +   Y N+ E+TA         W   GD+G +D
Sbjct: 334 H---ICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVD 390

Query: 428 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVM 487
           +DG +++ DR   +I   G  + P E E  L  HP+V D AV+ +PD E GE   A + +
Sbjct: 391 EDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQL 450

Query: 488 NPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
               + S++   +++D+  S +A YK  R + FVD +P++ +GK+++ +L+
Sbjct: 451 VEGIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501

Length = 501

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score =  116 bits (293), Expect = 1e-27
 Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 14/189 (7%)

Query: 358 KKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQ--CVMQGYYNNEEETARTIDK- 414
           K  S     P +E   ++ E G  +     G L ++     +++  Y + E   R +   
Sbjct: 402 KPGSATRPFPGVEPAIVDEE-GNEVEGGVEGYLVIKRPWPGMLRTIYGDHE---RYVKTY 457

Query: 415 ----NGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV 470
                G+  TGD    D+DG  +I+ R+ ++I   G ++  AE+E+ L++HP+V +AAVV
Sbjct: 458 FSKFPGYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVV 517

Query: 471 SLPDEEAGEIPAACVVMNPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSG 527
             PDE  GE   A V +    + S++   ++   V   +        + FV G+PK+ SG
Sbjct: 518 GKPDEVKGEAIYAFVTLKDGVEPSDELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSG 577

Query: 528 KIMRRILKD 536
           KIMRRIL+ 
Sbjct: 578 KIMRRILRK 586

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score =  113 bits (285), Expect = 9e-27
 Identities = 121/508 (23%), Positives = 213/508 (41%), Gaps = 65/508 (12%)

Query: 61  GKAYTYAQVARDTRGFAKALRSLGLRKGQVVI-VVLPNVAEYGIVALGIMAAGG-VFSGA 118
            + +T+ +V  +    A AL +L      + + V+L N  E  +  L   A GG V  G 
Sbjct: 24  DRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEM-LFWLAAAALGGYVLVGL 82

Query: 119 NPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLP---IIVLGEERIESAINWSELIE 175
           N T   + L   +  AD +L+V+ A     + GL LP   ++ +          ++EL+ 
Sbjct: 83  NTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVDTPA------YAELVA 136

Query: 176 AADKAGNNFSNDDDVKQTDLWI----------SKGVMLTHRNLV---ANLCSTLFSVVPE 222
           AA       +   +V   D ++           K V  +H  L      L    F +  +
Sbjct: 137 AAGAL----TPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTER-FGLTRD 191

Query: 223 MIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVP 282
            +  V+    +P FH   +       + +   V +  +F    FLD +  +  T+   V 
Sbjct: 192 DVCYVS----MPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVG 247

Query: 283 PIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSC 342
             +  ++  P   +   + L+  A    A+P   D+ + F ++F G QV++ YG +E + 
Sbjct: 248 KPLAYILATPERPDDADNPLR-VAFGNEASP--RDI-AEFSRRF-GCQVEDGYGSSEGAV 302

Query: 343 ITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSL-------------PSNTPGE 389
           I +   +P  P       S+G   P + +   NPET                      GE
Sbjct: 303 IVVR--EPGTPPG-----SIGRGAPGVAI--YNPETLTECAVARFDAHGALLNADEAIGE 353

Query: 390 LCVRSQCVM-QGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQ 448
           L   +     +GYYNN E TA  + ++G   +GD+ Y D DG I+   R  + ++  G  
Sbjct: 354 LVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGEN 412

Query: 449 VAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVAS--NV 506
           ++ A +E ILL HP++   AV ++PDE  G+   A +V+   A    D    F+A+  ++
Sbjct: 413 LSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDL 472

Query: 507 ATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
            T    R +     +P + + K+++R L
Sbjct: 473 GTKAWPRYVRIAADLPSTATNKVLKREL 500

Length = 540

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score =  111 bits (281), Expect = 1e-26
 Identities = 122/518 (23%), Positives = 192/518 (37%), Gaps = 90/518 (17%)

Query: 38  LPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPN 97
           L + V   AE   D +A V     ++ TYA++ R     A  LR+ G+     V V L  
Sbjct: 1   LHELVEAQAERTPDAIAVVCG--DESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRR 58

Query: 98  VAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAP-----IYEKVKG- 151
             +  +  L ++ AG  +   +P      L   ++ A A+L+++        IY    G 
Sbjct: 59  SPDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLTDPDDLAYVIY--TSGS 116

Query: 152 LGLPIIVLGEERIESAIN---WSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNL 208
            G P  V  E R  +A     W         A   FS ++                    
Sbjct: 117 TGRPKGVAIEHR--NAAALLQW---------AAAVFSAEE-----------------LAG 148

Query: 209 VANLCSTLF--SVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAF 266
           V    S  F  SV                F I+         L   G+VV+ +     A 
Sbjct: 149 VLAATSICFDLSV----------------FEIFV-------PLSTGGRVVLAD--NALAL 183

Query: 267 LDALITHEVTFAPIVPPIILSLVK-DPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKK 325
            D     EVT    VP     L++ D +          +R V  A  PL  +L+      
Sbjct: 184 PDLPAKAEVTLINTVPSAARELLRHDALPS-------SVRTVNLAGEPLPQELVQRLYAL 236

Query: 326 FPGVQVQEAYGLTEHSCITLTYGDPAN-PSAGSKKNSVGFILPNLEVKFINPETGKSLPS 384
               +V   YG +E      TY   A      S+  S+G  L   +  ++     + +P 
Sbjct: 237 PQVERVYNLYGPSE----DTTYSTYAEVEPGASRTPSIGRPLAGTQA-YVLDAHLQPVPV 291

Query: 385 NTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLH--------TGDIGYIDDDGDIFIVD 436
             PGEL +    V +GY    E TA     N +          TGD+     DG +  + 
Sbjct: 292 GVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLG 351

Query: 437 RIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED 496
           RI + +K +GF++   E+EA L + P V +A VV++ D        A +V +P A    +
Sbjct: 352 RIDDQVKVRGFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVADPGAAIDIE 411

Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
           D+   +A+ +  Y        +D +P + +GKI R+ L
Sbjct: 412 DLRARLATRLPAYMVPSRFVRLDALPLTPNGKIDRKAL 449

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score =  112 bits (283), Expect = 2e-26
 Identities = 81/323 (25%), Positives = 133/323 (41%), Gaps = 20/323 (6%)

Query: 229 TLGLIPFFHIYGITGICCATLRNKGKVVMMNRFE----LRAFLDALITHEVTFAPIVPPI 284
            L  +PF  ++G + +    L     +V    F+     RA     +TH  TF       
Sbjct: 225 LLAALPFCGVFGFSTLL-GALAGGAPLVCEPVFDAARTARALRRHRVTH--TFGN---DE 278

Query: 285 ILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCIT 344
           +L  + D   +  D    +L     + AP   +L +    +  GV +   YG +E     
Sbjct: 279 MLRRILDTAGERADFPSARLFGF-ASFAPALGELAALARAR--GVPLTGLYGSSE--VQA 333

Query: 345 LTYGDPANPSAGSKKNSVGFIL-PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYN 403
           L    PA      +    G    P   V+  +P+ G  LP    GE+ +R+  +M+GY +
Sbjct: 334 LVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLD 393

Query: 404 NEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPS 463
           N + TAR +  +G+  TGD+GY   DG      R+ + ++  GF V PAE+E  L   P 
Sbjct: 394 NPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPG 453

Query: 464 VEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPK 523
           V  A VV     +   +P A V+    A   E  +M      +A +K    +  V+  P 
Sbjct: 454 VAAAQVVGA-TRDGKTVPVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVEAFPV 512

Query: 524 SHSG---KIMRRILKDKMLEKMR 543
           + S    KI +  L++    ++ 
Sbjct: 513 TESANGAKIQKHRLREMAQARLA 535

Length = 540

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  111 bits (280), Expect = 5e-26
 Identities = 56/149 (37%), Positives = 83/149 (55%), Gaps = 16/149 (10%)

Query: 309 TAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHS-CITLTYGDPANPSAGSKKNSVGFILP 367
           T AAP++ + L  F      + + E YG++E S   T++     NP    +  S G  LP
Sbjct: 325 TGAAPISRETLEFFLSL--NIPIMELYGMSETSGPHTVS-----NPQN-YRLLSCGKALP 376

Query: 368 NLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYID 427
             E K  NP+      ++  GE+C+  + V  GY N EE+T   ID++GWLH+GD+G++D
Sbjct: 377 GCETKIHNPD------ADGIGEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLD 430

Query: 428 DDGDIFIVDRIKELIKYKGFQ-VAPAELE 455
           DDG ++I  RIKELI   G + V P  +E
Sbjct: 431 DDGFLYITGRIKELIITAGGENVPPVPIE 459

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  110 bits (275), Expect = 9e-26
 Identities = 114/496 (22%), Positives = 208/496 (41%), Gaps = 36/496 (7%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH 123
            TYA+V +  R     LR+LG+  G  V  +  N   +      +   G V   ANP   
Sbjct: 25  TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLS 84

Query: 124 ASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNN 183
             E+   ++ A+ K+++        +       +   +  +       E   A ++A   
Sbjct: 85  PKEIAYILNHAEDKVLLFDPN-LLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGE 143

Query: 184 FSNDDDVKQTD----------LWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGL- 232
            ++   V +              + KGV+ +HR     L S   S+V         + L 
Sbjct: 144 EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRA--LVLHSLAASLVDGTALSEKDVVLP 201

Query: 233 -IPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPII--LSLV 289
            +P FH+        ATL    +V+   R +  + ++      VTF   VP +   L+  
Sbjct: 202 VVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY 261

Query: 290 KDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE-----HSCIT 344
            +             R V+  +A   P  L +   +  GV+V++ YGLTE          
Sbjct: 262 LESTGHRLKTL---RRLVVGGSAA--PRSLIAR-FERMGVEVRQGYGLTETSPVVVQNFV 315

Query: 345 LTYGD--PANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSN--TPGELCVRSQCVMQG 400
            ++ +          K  + G  +P + ++  + E  + +P +    GE+ ++   +  G
Sbjct: 316 KSHLESLSEEEKLTLKAKT-GLPIPLVRLRVADEEG-RPVPKDGKALGEVQLKGPWITGG 373

Query: 401 YYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLT 460
           YY NEE T   +  +G+  TGDI   D++G + I DR+K+LIK  G  ++  +LE  L+ 
Sbjct: 374 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMG 433

Query: 461 HPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKV-RVLHFVD 519
           HP V++AAVV++P  +  E P A VV     K + +++ + +        ++     F +
Sbjct: 434 HPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAE 492

Query: 520 GIPKSHSGKIMRRILK 535
            IP++ +GK ++R L+
Sbjct: 493 EIPRTSAGKFLKRALR 508

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  106 bits (266), Expect = 5e-25
 Identities = 72/258 (27%), Positives = 118/258 (45%), Gaps = 23/258 (8%)

Query: 285 ILSLVKD----PIVDE------FDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEA 334
            L +V D    P+++       +DLS   LRA+ ++ A  +P++     +  P + + +A
Sbjct: 110 TLVIVGDAFARPLLEALEAAGRYDLS--SLRAISSSGAMWSPEVKQGLLELLPNLALVDA 167

Query: 335 YGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLP-SNTPGELCVR 393
            G +E      T G  ++ S     ++ G      +   ++ +  +  P S   G +  R
Sbjct: 168 LGASE------TGGGGSSVSRAGGASATGKFELGPDTVVLDEDGSEVPPGSGEVGWI-AR 220

Query: 394 SQCVMQGYYNNEEETA---RTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVA 450
              V  GYY + E+TA   R ID   +   GD   ++ DG I ++ R    I   G +V 
Sbjct: 221 GGRVPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVF 280

Query: 451 PAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYK 510
           P E+E  L  HP V DA VV +PDE  G+   A V +   A     ++ D    ++A YK
Sbjct: 281 PEEVEEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAGLDLAELRDHCRQHLAGYK 340

Query: 511 KVRVLHFVDGIPKSHSGK 528
             R +  VD +P++ SGK
Sbjct: 341 LPRAIVVVDTVPRAPSGK 358

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score =  108 bits (272), Expect = 6e-25
 Identities = 127/554 (22%), Positives = 211/554 (38%), Gaps = 130/554 (23%)

Query: 63  AYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV-FSGANPT 121
           A  Y  +       A+ L +LGL+ G  V ++     ++         AG V      P 
Sbjct: 49  ALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPM 108

Query: 122 AHAS------ELKKQVDAADAKLIVS---YAP-IYEKVKGLGLPIIVLGEERIESAINWS 171
                     +L+  + +A    I++     P + E   G  L  ++           W 
Sbjct: 109 GFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHVLSHA--------WF 160

Query: 172 ELIEAADKAGNNFSNDDDVKQTDLWIS------------KGVMLTHRNLVANLCSTLFSV 219
           + +  AD A    + DD        I+            +GV++THR L+ANL +     
Sbjct: 161 KALPEADVALPRPTPDD--------IAYLQYSSGSTRFPRGVIITHRALMANLRA----- 207

Query: 220 VPEMIGQVTTLGL-----------IPFFHIYGITGICCATLRNKGKVVMM--NRFELR-- 264
                  ++  GL           +PF+H  G+ G     +  +  V  +    F  R  
Sbjct: 208 -------ISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPL 260

Query: 265 AFLDALITHE---VTFAPIVPPIILSL----VKDPIVDEFDLSKLQLRAVMTAAAPLAPD 317
            +LD LI+     ++++P   P    L    V    + E DLS    R     A  + PD
Sbjct: 261 QWLD-LISRNRGTISYSP---PFGYELCARRVNSKDLAELDLSCW--RVAGIGADMIRPD 314

Query: 318 LLSSFEKKFPGVQVQE-----AYGLTEHSCITLTYGDPA--------------------N 352
           +L  F + F      +     +YGL E + + +++                         
Sbjct: 315 VLHQFAEAFAPAGFDDKAFMPSYGLAE-ATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVA 373

Query: 353 PSAGSKKNS----VGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEET 408
           P A +++       G  LP  E++  N E G  LP    G +CVR   +M GY+ +EE +
Sbjct: 374 PGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGYFRDEE-S 431

Query: 409 ARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVE--D 466
              +  +GWL TGD+GY+  DG ++I  R K+LI   G  + P ++E I    P +   D
Sbjct: 432 QDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGD 490

Query: 467 AAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVD------- 519
           AA  S+  E  GE     V    + +E    ++  +A+       VR    V+       
Sbjct: 491 AAAFSIAQEN-GEKIVLLVQCRISDEERRGQLIHALAA------LVRSEFGVEAAVELVP 543

Query: 520 --GIPKSHSGKIMR 531
              +P++ SGK+ R
Sbjct: 544 PHSLPRTSSGKLSR 557

Length = 579

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  108 bits (271), Expect = 6e-25
 Identities = 124/566 (21%), Positives = 215/566 (37%), Gaps = 89/566 (15%)

Query: 37  TLPDFVLQDAELYADK-VAFVEAVSGKAY--TYAQVARDTRGFAKALRSLGLRKGQVVIV 93
           TL + + + AE    + + +++A  G     +YA++  +       LR+LGL+ G  VI+
Sbjct: 11  TLEEALQRAAEHAPGRGITYIDA-DGSEEFQSYAELLEEAERILAGLRALGLKPGDSVIL 69

Query: 94  VLPNVAEY----------GIVALGIMAAGGVFSGANPTA----HASELKKQ-VDAADAKL 138
            L    ++          G V +  +A    +   N       +  EL    V   DA L
Sbjct: 70  QLERNEDFVTAFWACVLGGFVPV-PVAVPPTYDEPNAAVAKLRNIWELLGSPVILTDAAL 128

Query: 139 IVSYAPIYEKVKGLGLPIIVLGEER-IESAINWSELIEAADKAGNNFSNDDDVKQTDLWI 197
           + + A +  +     L ++ + E R               D A    ++      T +  
Sbjct: 129 VAALAGLRTRAGLEALRVLAIEELRSAPPDAPLHPA-RPDDPALLLLTSG----STGV-- 181

Query: 198 SKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHI-----YGITGIC--CATLR 250
            K V+LTHRN++A    T    V        +L  +P  H+       +  +   C  + 
Sbjct: 182 PKCVVLTHRNILARSAGT--VQVNGFTPDDVSLNWMPLDHVGGIVMLHLRDVYLGCQQIH 239

Query: 251 NKGKVVMMNRFELRAFLDALITHEV--TFAP-IVPPIILSLVKDPIVDEFDLSKLQLRAV 307
                ++ +   LR +LD +  + V  T+AP     ++   ++      +DLS   LR +
Sbjct: 240 VPTDYILAD--PLR-WLDLIDRYRVTITWAPNFAFALLNDALERIEDRSWDLS--SLRYI 294

Query: 308 MTAAAPLAPDLLSSF-----EKKFPGVQVQEAYGLTEH-SCITLTYGDPANPSAGSKKN- 360
           + A   +    +  F         P   ++ A+G++E  S +T + G    P  G     
Sbjct: 295 INAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDTGGVLVD 354

Query: 361 --------------------SVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQG 400
                                +G  +P + ++ ++ E G  LP    G L VR   V  G
Sbjct: 355 SLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-EDGALLPEGEVGRLQVRGPTVTSG 413

Query: 401 YYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLT 460
           YY N E  A    ++GW  TGD+G++  DG + I  R K++I   G      E+EA +  
Sbjct: 414 YYRNPEANAEAFTEDGWFRTGDLGFL-HDGRLTITGREKDMIIINGVNYYNHEIEAAVEQ 472

Query: 461 HPSVED--AAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFV 518
            P VE    A  ++ D  +G      V   P  +   DD +  +   + T    R +   
Sbjct: 473 VPGVEPSFTAACAVRDAGSGT-DELAVFFVP--RYDLDDRLAALLRAIRT-HVARKIGIA 528

Query: 519 ---------DGIPKSHSGKIMRRILK 535
                    +  PK+  GKI R  L+
Sbjct: 529 PAYVIPLAKEDFPKTSLGKIQRAQLR 554

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score =  106 bits (266), Expect = 2e-24
 Identities = 89/357 (24%), Positives = 146/357 (40%), Gaps = 44/357 (12%)

Query: 199 KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGL----IPF-FHIYGITGICCATLRNKG 253
           KGV++THRN+    C+ L +    +  +     L    I F   I  I      TL   G
Sbjct: 115 KGVVITHRNI----CNFLRAEGAILGIRPGDRVLQFASIAFDVSILEI----FTTLLAGG 166

Query: 254 KVVMMNRFELRA-FLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAA 312
            +V+           + L    VT A  + P +L+L+    V         LR ++    
Sbjct: 167 TLVIPPEELRLEDLAEFLNRLRVTVA-HLTPSLLALLDPEDVP-------SLRTLILGGE 218

Query: 313 PLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVK 372
                L+   ++     ++   YG TE + +T T    A+     K  ++G  LPN    
Sbjct: 219 ACPQALV---DRWSKPRRLLNTYGPTE-ATVTAT----ASRLTPGKPVNIGRPLPNYTCW 270

Query: 373 FINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA-RTIDKNGWL--------HTGDI 423
            ++P+    +P    GELC+    V +GY N  E TA + I    WL         TGD+
Sbjct: 271 VLDPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDL 330

Query: 424 GYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAA 483
               +DG +  + R  + +K +G ++   E+EA+L   P V  AAVV L D+  G+   A
Sbjct: 331 VRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLRALPGVVVAAVVLLLDDPGGKQLVA 390

Query: 484 CVV-----MNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
            +          A      +   +   + +Y    V   +D +P + SGK+ R+ L+
Sbjct: 391 FLAVDGAAGGEPADVDIALLRSALRERLPSYMVPSVYVPLDELPLTASGKVDRKALR 447

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  104 bits (262), Expect = 4e-24
 Identities = 109/500 (21%), Positives = 175/500 (35%), Gaps = 77/500 (15%)

Query: 65  TYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHA 124
           T+ ++   +   A+ LR+ G+RKG  V++++P  A+   +   +   G V    +P    
Sbjct: 4   TFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGMGR 63

Query: 125 SELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNF 184
             L + ++ A+    +            G+P                    A D A   F
Sbjct: 64  KHLGRCLEEAEPDAFI------------GIPK-------------------ADDPAAILF 92

Query: 185 SNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGI 244
           ++            KGV+ THR   A +       +  + G       +  F  + + G 
Sbjct: 93  TSGSTGP------PKGVVYTHRTFAAQI-----DALRSLYGIREGDRDLAAFPPFALFGP 141

Query: 245 C--CATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKL 302
                T+            +      A+     +      P +L  V     +E  +   
Sbjct: 142 ALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCV-FGSPALLKNVAR-YCEENGIQLP 199

Query: 303 QLRAVMTAAAPLAPDLLSSFEKKF-PGVQVQEAYGLTEH---SCITL-----TYGDPANP 353
            LR V++A AP+ PDLL  F     P  ++   YG TE    + I          +P   
Sbjct: 200 SLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLAESAEPPEA 259

Query: 354 SAGSKKNSVGFILPNLEVKFI----NPETGKS----LPSNTPGELCVRSQCVMQGYYNNE 405
            AG     VG  +P ++V+ I     P         LP    GE+ V    V + YYN  
Sbjct: 260 GAGV---CVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRP 316

Query: 406 EETART--IDKNGWLH-TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHP 462
           E T      D N   H  GD+GY DD G ++   R    ++  G  +    +E +   HP
Sbjct: 317 EATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHP 376

Query: 463 SVEDAAVVSLPDEEAGEIPAACVVMNP----NAKESEDDIMDFVASNVATYKKVRVLHFV 518
            V  +A+V +  +   + P   V   P      K  E  +        AT +   VL   
Sbjct: 377 GVRRSALVGV-GKPGTQAPVLVVEPMPPVLDRRKRLEGRLRATAKQAPATVEIQAVL-IH 434

Query: 519 DGIP--KSHSGKIMRRILKD 536
              P    H+ KI R  L D
Sbjct: 435 PQFPVDIRHNAKIFRERLAD 454

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score =  100 bits (251), Expect = 2e-22
 Identities = 78/283 (27%), Positives = 126/283 (44%), Gaps = 34/283 (12%)

Query: 273 HEVTFAPIVPPIILSLVKDPIVDEFDLSKLQ-LRAVMTAAAPLAPDLLSSFEKKFPGVQV 331
           H+V    +VPP + SL    I +    ++L  L+ +    A L+  L      +  G Q+
Sbjct: 271 HQVNVTALVPPAV-SLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL-GCQL 328

Query: 332 QEAYGLTE------------HSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG 379
           Q+ +G+ E                T T G P              + P+ EV   +   G
Sbjct: 329 QQVFGMAEGLVNYTRLDDSDERIFT-TQGRP--------------MSPDDEVWVAD-ADG 372

Query: 380 KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIK 439
             LP    G L  R     +GYY + +  A   D NG+  +GD+  ID DG I +V R K
Sbjct: 373 NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREK 432

Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIM 499
           + I   G ++A  E+E +LL HP+V  AA+VS+ DE  GE   A +V+    K  +  + 
Sbjct: 433 DQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPLKAVQ--LR 490

Query: 500 DFV-ASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541
            F+    +A +K    +  VD +P +  GK+ ++ L+  +  +
Sbjct: 491 RFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 533

Length = 536

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score =  100 bits (252), Expect = 2e-22
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 19/173 (10%)

Query: 377 ETGKSLPSNTPGELCVR----SQCVMQGYYNNEEETARTID------KNGWLHTGDIGYI 426
           E G  L     G L ++        M+  Y + E   R +       K  +  TGD    
Sbjct: 440 EEGNPLEGGEGGNLVIKDPWPGM--MRTIYGDHE---RFVKTYFSTFKGMYF-TGDGARR 493

Query: 427 DDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV 486
           D+DG  +I  R+ +++   G ++  AE+E+ L+ HP V +AAVV  PD+  G+   A V 
Sbjct: 494 DEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVT 553

Query: 487 MNPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
           +    + S++   ++ ++V   +    K  V+ F  G+PK+ SGKIMRRIL+ 
Sbjct: 554 LKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRK 606

Length = 637

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 98.9 bits (246), Expect = 6e-22
 Identities = 82/303 (27%), Positives = 139/303 (45%), Gaps = 13/303 (4%)

Query: 233 IPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDP 292
           +P FH  G+ G+   T+   G V+    F+  A L     H       VP ++  +++ P
Sbjct: 224 MPMFHGLGL-GMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELP 282

Query: 293 IVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPAN 352
                     QLR VM++   L P L   F   + G  +   YG TE     +  G  A 
Sbjct: 283 PRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGSTE-----VGIGALAT 336

Query: 353 PSA-GSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETART 411
           P+       +VG  +    V+ ++    + +     G + V  +     Y +   +    
Sbjct: 337 PADLRDAPETVGKPVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTRYTDGGGKA--V 393

Query: 412 IDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS 471
           +D  G   TGD+GY+D+ G +FIV R  ++I   G  V P  +E  L  HP+V D AV+ 
Sbjct: 394 VD--GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIG 451

Query: 472 LPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMR 531
           +PDE  G   AA VV++P +      + D++   V+ +++ R ++ V  IP++ +GK++R
Sbjct: 452 VPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLR 511

Query: 532 RIL 534
           + L
Sbjct: 512 KEL 514

Length = 516

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 95.9 bits (239), Expect = 9e-21
 Identities = 61/177 (34%), Positives = 98/177 (55%), Gaps = 18/177 (10%)

Query: 292 PIVDEFDLSKLQ------LRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITL 345
           P+ D    +K++      +R + + A+PL+PD++      F G +V E YG+TE SC+ +
Sbjct: 360 PMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETSCV-I 417

Query: 346 TYGDPANPSAGSKKNSVGFILPNLEVKFIN-PETGKSLPSNTP---GELCVRSQCVMQGY 401
           +  D  +  +G     VG   P  EVK ++ PE   +   + P   GE+CVR   + +GY
Sbjct: 418 SGMDEGDNLSGH----VGSPNPACEVKLVDVPEMNYT-SEDQPYPRGEICVRGPIIFKGY 472

Query: 402 YNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAI 457
           Y +E +T   ID++GWLHTGDIG     G + I+DR K + K  +G  +AP ++E +
Sbjct: 473 YKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENV 529

Length = 651

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 74/275 (26%), Positives = 128/275 (46%), Gaps = 39/275 (14%)

Query: 301 KLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAG---- 356
           ++ L+ +    + + P L+ ++E+++ GV V   +G+TE    T   G  A P +G    
Sbjct: 297 RMSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTE----TSPVGTVARPPSGVSGE 351

Query: 357 ---SKKNSVGFILPNLEVKFINPETGKSLPSN--TPGELCVRSQCVMQGYYNNEEET--- 408
              + + S G    +LE + +N   G+ + S     GE+ VR   V   YY++  E    
Sbjct: 352 ARWAYRVSQGRFPASLEYRIVN--DGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGG 409

Query: 409 -ARTID------------KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELE 455
            A T               +GWL TGD+G +  DG + I DR +++I+  G  +  A+LE
Sbjct: 410 AASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLE 469

Query: 456 AILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN---AKESEDDIMDFVASNVATYKKV 512
             ++  P V + AV+  PD++ GE P A  V+ P     +E+ + + D +   +  +   
Sbjct: 470 NYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLP 529

Query: 513 RVLHFVDGIPKSHSGKI----MRRILKDKMLEKMR 543
               FVD I K+  GK     +R+ L D   E ++
Sbjct: 530 EYWTFVDEIDKTSVGKFDKKDLRQHLADGDFEIIK 564

Length = 576

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 94.2 bits (235), Expect = 2e-20
 Identities = 104/502 (20%), Positives = 194/502 (38%), Gaps = 71/502 (14%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           +L D   + A  + D+ A +     ++ +YA++      +A    + G+ KG VV +++ 
Sbjct: 38  SLGDVFEEAAARHPDRPALLF--EDQSISYAELNARANRYAHWAAARGVGKGDVVALLME 95

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV---SYAPIYEKVKG-- 151
           N  EY    LG+   G V +  N     + L   ++  DAK ++        +E+ +   
Sbjct: 96  NRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADL 155

Query: 152 -LGLPIIVLGEERIESAINWSELIEAADKA-GNNFSNDDDV--KQTDLWI--------SK 199
                + V G + ++    + +L  AA  A   N ++   V  K T  +I         K
Sbjct: 156 ARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPK 215

Query: 200 GVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN 259
             +++H   +  +    F  +  +         +P +H  G T    + L     + +  
Sbjct: 216 AAVMSHMRWLKAMGG--FGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRR 273

Query: 260 RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLL 319
           +F    F D +  +  T    +  +   L+  P          +LR +M     L PD+ 
Sbjct: 274 KFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKP--TDRDHRLR-LMIGNG-LRPDIW 329

Query: 320 SSFEKKFPGV-QVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLE-----VKF 373
             F+++F G+ ++ E Y  +E   +             +   +VG +   L      VK+
Sbjct: 330 DEFQQRF-GIPRILEFYAASE-GNVGFINVF-------NFDGTVGRVPLWLAHPYAIVKY 380

Query: 374 INPETGKSL----------PSNTPGELCVRSQCVMQGY----YNNEEETARTIDKNG--- 416
            + +TG+ +               G L  R   +        Y + E + + I ++    
Sbjct: 381 -DVDTGEPVRDADGRCIKVKPGEVGLLIGR---ITDRGPFDGYTDPEASEKKILRDVFKK 436

Query: 417 ---WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV--VS 471
              W +TGD+   D  G    VDR+ +  ++KG  VA  E+E  L   P VE+A V  V 
Sbjct: 437 GDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVE 496

Query: 472 LPDEE--AGEIPAACVVMNPNA 491
           +P  +  AG    A +V+   A
Sbjct: 497 VPGTDGRAG---MAAIVLADGA 515

Length = 600

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 92.0 bits (229), Expect = 8e-20
 Identities = 69/237 (29%), Positives = 114/237 (48%), Gaps = 27/237 (11%)

Query: 303 QLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE-HSCI-TLTYGDPANPSAGSKKN 360
           Q R ++   AP  P LL   + +   +++   YG+TE  S I TL    P +  AG   N
Sbjct: 231 QFRTILLGGAPAWPSLLE--QARQLQLRLAPTYGMTETASQIATLK---PDDFLAG--NN 283

Query: 361 SVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHT 420
           S G +LP+ ++          +P+N  G + +++Q +  GYY         +D  G   T
Sbjct: 284 SSGQVLPHAQIT---------IPANQTGNITIQAQSLALGYYPQ------ILDSQGIFET 328

Query: 421 GDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEI 480
            D+GY+D  G + I+ R  + I   G  V PAE+EA +L    V+D  V+ LPD   GE+
Sbjct: 329 DDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEV 388

Query: 481 PAACVVMNPNAKE-SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
             A  V  P     S +++   +   ++ +K+ +    V  +P++  GKI R+ L+ 
Sbjct: 389 VTAIYV--PKDPSISLEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQ 443

Length = 452

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 89.9 bits (224), Expect = 3e-19
 Identities = 82/358 (22%), Positives = 137/358 (38%), Gaps = 50/358 (13%)

Query: 199 KGVMLTHRNLVANLCS--TLFSVVPE-MIGQVTTLGL-IPFFHIYG--ITGICCATLRNK 252
           KGV ++HR LV  L S      +     +  VTT+   I    +    ++G         
Sbjct: 109 KGVEVSHRALVNFLLSMARRPGLGASDRLLAVTTISFDISVLELLLPLLSG--------- 159

Query: 253 GKVVMMNRFELR---AFLDALITHEVTFAPIVPP---IILSLVKDPIVDEFDLSKLQLRA 306
             VV+ +   +R        +    +T     P    ++L+            +  + R 
Sbjct: 160 ATVVIASAETVRDPERLARLIADERITIMQATPATWRMLLA------------AGWRGRE 207

Query: 307 VMTA---AAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVG 363
            +TA      L  DL         G ++   YG TE    T  +   A  +A     ++G
Sbjct: 208 SLTALCGGEALPRDLAERLLST--GAELWNMYGPTE----TTIWSTCARVTAADGPVTIG 261

Query: 364 FILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI-----DKNG-- 416
             + N +V ++  E  + +P   PGEL +    V +GY    E TA        D  G  
Sbjct: 262 RPIANTQV-YVLDEDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGR 320

Query: 417 WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEE 476
              TGD+     DG +  + R  + +K +GF++   E+EA L  HP V DA VV   +  
Sbjct: 321 LYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPGVADAVVVVREEGP 380

Query: 477 AGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
             +   A VV    A    + +   + + +  Y        +D +P + +GK+ R+ L
Sbjct: 381 GDQRLVAYVVPKAGAAPDAEALRAALRATLPAYMVPAAFVQLDELPLTPNGKVDRKAL 438

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 88.2 bits (219), Expect = 9e-19
 Identities = 70/304 (23%), Positives = 122/304 (40%), Gaps = 47/304 (15%)

Query: 234 PFFHIYGITGIC--CATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKD 291
           P  H YG+  IC   A L    K V++     +  L+ L          VP ++  L + 
Sbjct: 150 PVTHSYGL--ICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRL 207

Query: 292 PIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPA 351
                      Q  AVMT+  PL         ++     + + YG +E  C+++      
Sbjct: 208 LPGTF------QFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSI------ 253

Query: 352 NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETART 411
            P        +G  LP++ V       G     N P E+ V+           ++E    
Sbjct: 254 CPDM-KSHLDLGNPLPHVSV-----SAGSD--ENAPEEIVVK---------MGDKE---- 292

Query: 412 IDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS 471
                 + T D+GY  + G +  + R+ ++I   G  V P E+E ++L  P V++A V  
Sbjct: 293 ------IFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYR 346

Query: 472 LPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMR 531
             D  AGE   A V+ +         + ++   ++A Y+    +  V  IPK+ +GK+ R
Sbjct: 347 GKDPVAGERVKAKVISHEEI--DPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSR 404

Query: 532 RILK 535
           ++L+
Sbjct: 405 KLLE 408

Length = 414

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 87.6 bits (217), Expect = 3e-18
 Identities = 89/348 (25%), Positives = 141/348 (40%), Gaps = 41/348 (11%)

Query: 199 KGVMLTHRNLVAN--LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCA---TLRNKG 253
           KGV LTH NL+AN   C   FS   + +     +  +P FH YG     C     L    
Sbjct: 199 KGVPLTHANLLANQRACLKFFSPKEDDV----MMSFLPPFHAYGFN--SCTLFPLLSGVP 252

Query: 254 KVVMMNRFELRAFLDALITHEVTF---APIVPPIILSLVKDPIVDEFDLSKLQLRAVMTA 310
            V   N    +  ++ +   +VTF    P+    IL   K     E  L    LR V+  
Sbjct: 253 VVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKK---QESCLP--SLRFVVIG 307

Query: 311 AAPLAPDLLSSFEKKFPGVQVQEAYGLTEHS-CITLTYGDPANPSAGSKKNSVGFILPNL 369
                  L     K FP +Q+++ YG TE S  IT+        ++   ++ VG  +  +
Sbjct: 308 GDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITIN-----TVNSPKHESCVGMPIRGM 362

Query: 370 EVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA-RTIDKNGWLHTGDIGYIDD 428
           +V  ++ ET   + S   G +  R   +  GY   +       +    W  TGD+GY+D 
Sbjct: 363 DVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDR 422

Query: 429 DGDIFIVDRIKELIKYKGFQVAPAELEAILLTH---PSVEDAA---VVSLPDEEAGEIPA 482
            G++F+  R+   +K     V+   LE+IL+      + + A    V  LP    GE   
Sbjct: 423 HGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLP----GEKVR 478

Query: 483 ACV--VMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGK 528
            C+      +  E  D + +   S++    K+   H V+ IP   +GK
Sbjct: 479 LCLFTTFPTSISEVNDILKNSKTSSIL---KISYHHQVESIPMLGTGK 523

Length = 539

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 87.4 bits (216), Expect = 3e-18
 Identities = 128/531 (24%), Positives = 221/531 (41%), Gaps = 53/531 (9%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           T+ D V + A    + +A        A  Y ++  +  G A  LR+  + +G  V+V+  
Sbjct: 15  TVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISD 74

Query: 97  NVAEYGIVALGIMAAGGV---FSGANPTAHASELKKQVDAADAKLI-----VSYAPIYEK 148
           N  E  +  L     G +     G  P A      +  D A A L+     ++ + + E 
Sbjct: 75  NGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPA-AALVAPGSKMASSAVPEA 133

Query: 149 VKGLGLPIIVLGEERIESAINWSELIEAADKAGN-NFSNDDDVKQTDLWIS------KGV 201
           +  + +  + +     ES  +    ++AA  AGN +  ++D +     + S      K V
Sbjct: 134 LHSIPVIAVDIAAVTRESEHS----LDAASLAGNADQGSEDPLAMI--FTSGTTGEPKAV 187

Query: 202 MLTHRNLVAN---LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM 258
           +L +R   A    L     + V  ++G+ TT   +P  HI G+  I    +   G + + 
Sbjct: 188 LLANRTFFAVPDILQKEGLNWVTWVVGE-TTYSPLPATHIGGLWWILTCLMH--GGLCVT 244

Query: 259 NRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDL 318
                 + L+ L T+ V    +VP ++  LV +       +  L+L     + A +A D+
Sbjct: 245 GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRA-IAADV 303

Query: 319 LSSFEKKF---PGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFI- 374
                 +F    GV+  + YGL+E  C  L            +  +VG   P ++V    
Sbjct: 304 ------RFIEATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAA 357

Query: 375 ----NPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDG 430
                P    + PS + G L ++S   M GY+NN E T   +  +GW++TGD+    +DG
Sbjct: 358 TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERT-AEVLIDGWVNTGDLLERREDG 416

Query: 431 DIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN 490
             +I  R  E+I   G  +AP E++ I      V +AA   +PDEE G +    VV   +
Sbjct: 417 FFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVV--AS 474

Query: 491 AKESEDDIMDFVASNVATYK-------KVRVLHFVDGIPKSHSGKIMRRIL 534
           A+  E        +  A ++       +   +  V  IP++ SGK+MR  L
Sbjct: 475 AELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASL 525

Length = 540

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 88.7 bits (220), Expect = 3e-18
 Identities = 114/541 (21%), Positives = 209/541 (38%), Gaps = 72/541 (13%)

Query: 33   PENVTLPDFVLQ----DAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKG 88
            P     PD V Q     A  + ++ A V     +  +YA++ R     A  L + G+   
Sbjct: 505  PATEYAPDCVHQLIEAQARQHPERPALV--FGEQVLSYAELNRQANRLAHVLIAAGVGPD 562

Query: 89   QVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEK 148
             +V + +    E  +  L ++ AGG +   +P      L   +D +  +L+++ +     
Sbjct: 563  VLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQS---HL 619

Query: 149  VKGLGLPIIVLGEERIESAINWSELIEAAD----KAGNNFSNDDDVKQTDLWI------- 197
            +  L +P          + +    L E AD     +G+N     D       I       
Sbjct: 620  LAQLPVP----------AGLRSLCLDEPADLLCGYSGHNPEVALDPDNLAYVIYTSGSTG 669

Query: 198  -SKGVMLTHRNLVANLCST--LFSVVP-EMIGQVTTLGLIPFFH--IYGITGICCATLRN 251
              KGV ++H  L   +C       +   + +  V+T          ++G        L +
Sbjct: 670  QPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAF-DLGVTELFG-------ALAS 721

Query: 252  KGKVVMMNRFELR---AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVM 308
               + ++     R   AF   +    VT   IVP  + +L++   V          RA++
Sbjct: 722  GATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVAL----PRPQRALV 777

Query: 309  TAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPN 368
                 L  DLL+      PG ++   YG TE + + ++  + ++         +G  L N
Sbjct: 778  CGGEALQVDLLARVRALGPGARLINHYGPTE-TTVGVSTYELSDEERDFGNVPIGQPLAN 836

Query: 369  LEV----KFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI--DKNG-----W 417
            L +     ++NP     +P    GEL +    + +GY+     TA     D  G      
Sbjct: 837  LGLYILDHYLNP-----VPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRL 891

Query: 418  LHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEA 477
              TGD+     DG I  + R+   +K +GF++   E+EA LL  P V +A V++ P +  
Sbjct: 892  YRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPGDAG 951

Query: 478  GEIPAACV--VMNPNAKESE--DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRI 533
             ++ A  V   +   A+     D++   +   +  Y     L  +D +P + +GK+ R+ 
Sbjct: 952  LQLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNGKLDRKA 1011

Query: 534  L 534
            L
Sbjct: 1012 L 1012

Length = 3956

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 86.6 bits (215), Expect = 6e-18
 Identities = 126/526 (23%), Positives = 197/526 (37%), Gaps = 77/526 (14%)

Query: 65  TYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGI-MAAGGVFSGANPTAH 123
           T+ +V    R  A  L + G+  G  V V+     E    A G+ M    +     PT  
Sbjct: 31  TWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTMLHQPTPR 90

Query: 124 ------ASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIE-- 175
                 A +  + +    AK +V           +G P +       E  I    + +  
Sbjct: 91  TDLAVWAEDTLRVIGMIGAKAVV-----------VGEPFLAAAPVLEEKGIRVLTVADLL 139

Query: 176 AADKAGNNFSNDDDVKQTDLW-----ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTL 230
           AAD      + +DD+    L        K V +TH NL AN    +F      +     +
Sbjct: 140 AADPIDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANA-EAMFVAAEFDVETDVMV 198

Query: 231 GLIPFFHIYGITGICCATLRNKGKVVMMNRFE-LRAFL--DALITH---EVTFAPIVPPI 284
             +P FH  G+ G     +    ++V +   + LR  L    LI+     +T AP     
Sbjct: 199 SWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYA 258

Query: 285 ILS--LVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEK-----KFPGVQVQEAYGL 337
           +L+  L +      FDLS L  R  +  A P+ P  +                +  AYG+
Sbjct: 259 LLARRLRRQAKPGAFDLSSL--RFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGM 316

Query: 338 TE-------HSCIT--------------LTYGDPANPSAGSKKNSVGFILPNLEVKFINP 376
            E         C                L    PA      +  ++G  LP LEV+ ++ 
Sbjct: 317 AEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD- 375

Query: 377 ETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVD 436
           E G+ LP    G + +R + V  GY   +       D +GWL TGD+GY+ ++G++ +  
Sbjct: 376 EDGQVLPPRGVGVIELRGESVTPGYLTMDGFIP-AQDADGWLDTGDLGYLTEEGEVVVCG 434

Query: 437 RIKELIKYKGFQVAPAELEAILLTHPSVE--DAAVVSLPDEEAGEIPAACVVMNPNAKES 494
           R+K++I   G  + P ++E        V   +A  V L    + E  A  V +  NA E 
Sbjct: 435 RVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFA--VAVESNAFED 492

Query: 495 EDD---IMDFVASNV-----ATYKKVRVLHFVDGIPKSHSGKIMRR 532
             +   I   VA  V        + V VL     IPK+ SGK+ R 
Sbjct: 493 PAEVRRIRHQVAHEVVAEVGVRPRNVVVLG-PGSIPKTPSGKLRRA 537

Length = 545

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 86.8 bits (215), Expect = 7e-18
 Identities = 62/170 (36%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 303 QLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSV 362
           +LR +++  APL+ ++   F +      V + YGLTE +    T G    P       +V
Sbjct: 384 RLRLLISGGAPLSTEI-EEFLRVTSCAFVVQGYGLTE-TLGPTTLG---FPDEMCMLGTV 438

Query: 363 GFILPNLEVKFIN-PETG-KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHT 420
           G      E++    PE G   L     GE+CVR +C+  GYY N E T   + K+GW HT
Sbjct: 439 GAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHT 497

Query: 421 GDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAV 469
           GDIG I  +G + I+DR K LIK  +G  VA   LE +   +P VED  V
Sbjct: 498 GDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWV 547

Length = 660

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 82/343 (23%), Positives = 147/343 (42%), Gaps = 38/343 (11%)

Query: 211 NLCSTLFSVVPEMIGQVTTLGLIPFFH--IYGITGICCATLRNKGKVVMMNRFELRAFLD 268
           ++ + +FS     IG V+       FH  +YG   +    +  +G ++     E     +
Sbjct: 294 DIPTVVFS--HSSIGWVS-------FHGFLYGSLSLGNTFVMFEGGIIKNKHIE-DDLWN 343

Query: 269 ALITHEVTFAPIVPPIILSLVK-DP----IVDEFDLSKLQLRAVMTAAAPLAPDLLSSFE 323
            +  H+VT    +P  I  L+K DP    I  ++DLS L  + +      +   +    E
Sbjct: 344 TIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNL--KEIWCGGEVIEESIPEYIE 401

Query: 324 KKFPGVQVQEAYGLTEHSCITL-TYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSL 382
            K   ++    YG TE     L  YG    P   +   S+ FI P+     I  E GK L
Sbjct: 402 NKL-KIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSI-FIKPS-----ILSEDGKEL 454

Query: 383 PSNTPGELCVR---SQCVMQGYYNNEEETARTIDK-NGWLHTGDIGYIDDDGDIFIVDRI 438
             N  GE+  +          +Y N+E+  +   K  G+ ++GD+G+ D++G   IV R 
Sbjct: 455 NVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRS 514

Query: 439 KELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDI 498
            + IK  G +V    +E  +L HP V +   + + D +   +P   +V+  +      D+
Sbjct: 515 DDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDL 574

Query: 499 MDF-------VASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
                     +  ++ +   +R +  V+ +PK+ +GKI R+I+
Sbjct: 575 NKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQII 617

Length = 647

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 103/395 (26%), Positives = 162/395 (41%), Gaps = 73/395 (18%)

Query: 200 GVMLTHRNLVAN---LCSTLFSVVPEMIGQVTTL-GLIPFFHIYG-ITGICCATLRNKGK 254
           GVM++HRN++AN   L S  F     +    TT+   +PF+H  G + G+C A +     
Sbjct: 177 GVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVC-APILGGCP 235

Query: 255 VVMMNRFELRAFLD-------ALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAV 307
            V+ +     AFL         L ++   F+   P     L      D+ D++ L L  V
Sbjct: 236 AVLTSPV---AFLQRPARWMQLLASNPHAFSA-APNFAFELAVRKTSDD-DMAGLDLGGV 290

Query: 308 MT---AAAPLAPDLLSSFEKKF-----PGVQVQEAYGLTEHSCI----------TLTYGD 349
           +     +  + P  L  F  +F         ++ +YGL E +                 D
Sbjct: 291 LGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFD 350

Query: 350 PANPSAGSKKNS--------VGFILP-NLEVKFINPETGKSLPSNTPGELCVRSQCVMQG 400
               SAG  K          V +  P +  V+ ++P+T    P+ T GE+ V    V  G
Sbjct: 351 YEKLSAGHAKRCETGGGTPLVSYGSPRSPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAG 410

Query: 401 YYNNEEETARTID-----------KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQV 449
           Y+   EET RT             +  WL TGD+G+I  +G++FIV RIK+L+   G   
Sbjct: 411 YWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFI-SEGELFIVGRIKDLLIVDGRNH 469

Query: 450 APAELEAIL--LTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDF------ 501
            P ++EA +  +T   V   A +S+PD+   E   A + +       E+ +         
Sbjct: 470 YPDDIEATIQEITGGRV---AAISVPDDGT-EKLVAIIELKKRGDSDEEAMDRLRTVKRE 525

Query: 502 VASNVATYKKVRVLHFV----DGIPKSHSGKIMRR 532
           V S ++    + V   V      IP + SGKI R 
Sbjct: 526 VTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRA 560

Length = 578

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 84.4 bits (209), Expect = 4e-17
 Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 14/172 (8%)

Query: 303 QLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSV 362
           ++R +++  APL+ D    F     G  + + YGLTE +C   T+ +  + S G     V
Sbjct: 421 RIRFMLSGGAPLSGDT-QRFINICLGAPIGQGYGLTE-TCAGATFSEWDDTSVGR----V 474

Query: 363 GFILPNLEVKFINPETGKSLPSNTP---GELCVRSQCVMQGYYNNEEET--ARTIDKNG- 416
           G  LP   VK ++ E G  L S+ P   GE+ +    V  GY+ N+E+T     +D+ G 
Sbjct: 475 GPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGM 534

Query: 417 -WLHTGDIGYIDDDGDIFIVDRIKELIKYK-GFQVAPAELEAILLTHPSVED 466
            W +TGDIG    DG + I+DR K+++K + G  V+  ++EA L   P V++
Sbjct: 535 RWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDN 586

Length = 696

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 82.0 bits (203), Expect = 6e-17
 Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 3/138 (2%)

Query: 397 VMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEA 456
           + +GY N  +       + GW  T D+G +DD G + ++ R  + I   G  V P  +EA
Sbjct: 217 LAKGYRNPVDPDP--FAEPGWFRTDDLGALDD-GVLTVLGRADDAISTGGLTVLPQVVEA 273

Query: 457 ILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLH 516
            L THP+V D AV  LPD+  G+   A VV +     + + +   VA  +      R LH
Sbjct: 274 ALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPRELH 333

Query: 517 FVDGIPKSHSGKIMRRIL 534
            VD +P+   GK+ RR L
Sbjct: 334 VVDELPRRGIGKVDRRAL 351

Length = 358

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 84.6 bits (209), Expect = 7e-17
 Identities = 105/491 (21%), Positives = 191/491 (38%), Gaps = 49/491 (9%)

Query: 65   TYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHA 124
             YA++ R     A AL   G+    +V V +    E  +  L I+ AGG +   +P   A
Sbjct: 538  DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPA 597

Query: 125  SELKKQVDAADAKLIVSYAPIYEKVK-GLGLPIIVLGEERIESAINWSELIEAADKAGNN 183
              L   ++ +  +L++S + +  K+    G+ ++ L            E         N 
Sbjct: 598  ERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRPAAWLEGYSEENPGTELNPENL 657

Query: 184  ----FSNDDDVKQTDLWISKGVMLTHRNLVANLC--STLFSV-VPEMIGQVTT----LGL 232
                +++    K       KG    HR L   LC     + + V + + Q T     + +
Sbjct: 658  AYVIYTSGSTGK------PKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSV 711

Query: 233  IPFFHIYGITGICCATLRNKGKVVMMNRFELR--AFLDALI-THEVTFAPIVPPIILSLV 289
              FF            L +  ++V+    + R  A L  LI    V     VP ++ + +
Sbjct: 712  WEFF----------WPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFL 761

Query: 290  KDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGD 349
            +D  V     S   LR ++ +   L  D       K P   +   YG TE + I +T+  
Sbjct: 762  QDEDVA----SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTE-AAIDVTHW- 815

Query: 350  PANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA 409
                  G     +G  + NL    ++    + +P    GEL +  + + +GY+     TA
Sbjct: 816  -TCVEEGGDSVPIGRPIANLACYILDAN-LEPVPVGVLGELYLAGRGLARGYHGRPGLTA 873

Query: 410  RT------IDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPS 463
                    +       TGD+     DG I    RI   +K +G ++   E+EA LL HP 
Sbjct: 874  ERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPW 933

Query: 464  VEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPK 523
            V +AAV+++   +  ++    V+ +      E  +   +A+++  Y        ++ +P 
Sbjct: 934  VREAAVLAV---DGKQLVGYVVLESEGGDWRE-ALKAHLAASLPEYMVPAQWLALERLPL 989

Query: 524  SHSGKIMRRIL 534
            + +GK+ R+ L
Sbjct: 990  TPNGKLDRKAL 1000

Length = 5163

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 83.5 bits (207), Expect = 8e-17
 Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 47/201 (23%)

Query: 304 LRAVMTAAAPLAPDLLSSFEKKFPGV---QVQEAYGLTEHSCITLTYGDPANPSAGSKK- 359
           +RA+++   PL     S+  ++F  V    V + +GLTE  C             G  + 
Sbjct: 430 VRAMLSGGGPL-----SAATQEFVNVVFGMVIQGWGLTETVCC------------GGIQR 472

Query: 360 ------NSVGFILPNLEVKFINPETGKSLPSNTP---GELCVRSQCVMQGYYNNEEETAR 410
                 N+VG +L  +E+K ++ E  K   ++TP   GE+ +R   + +GYY  EE T  
Sbjct: 473 TGDLEPNAVGQLLKGVEMKLLDTEEYKH--TDTPEPRGEILLRGPFLFKGYYKQEELTRE 530

Query: 411 TIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIK-YKGFQVAPAELEAILLTHPSVEDAAV 469
            +D++GW HTGD+G I  +G + I+ R+K L K   G  +A   LEA+   +        
Sbjct: 531 VLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNE------- 583

Query: 470 VSLPDEEAGEIPAACVVMNPN 490
           + +P+         CV+++P 
Sbjct: 584 LVVPN-------GVCVLVHPA 597

Length = 700

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 105/522 (20%), Positives = 191/522 (36%), Gaps = 97/522 (18%)

Query: 61  GKAYTYAQVARDTRGFAKALRS-LGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGAN 119
           GK +TY++       +A  L     ++ G  V +   N AE+  + L + + G V +  N
Sbjct: 3   GKTWTYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFIN 62

Query: 120 PTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-------GLPIIVLGEERIESAINWSE 172
                  L   +  + AK ++      +    L       GLP           AI+W  
Sbjct: 63  YNLSGDPLIHCLKISGAKFVIVDP---DDPAALIYTSGTTGLPKGC--------AISWRR 111

Query: 173 LIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGL 232
            +       N  S+D +++  D                      ++ +P   G    LGL
Sbjct: 112 TL----VTSNPLSHDLNLQFPDRT--------------------YTCMPLYHGTAAFLGL 147

Query: 233 IPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDP 292
                        C  L + G + +  +F    F   +   E T    V  +   L+  P
Sbjct: 148 -------------CYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGELCRYLLATP 194

Query: 293 IVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPAN 352
                   K++   V      L PD+   F ++F   ++ E Y  TE       +     
Sbjct: 195 PSPYDRDHKVR---VAYGNG-LRPDIWERFRERFNVPEIGEFYAATEGVFAFTNHN--VG 248

Query: 353 P-SAGSKKNSVGFIL--------------PNLEVKFINPETG--KSLPSNTPGELCVR-- 393
           P +AG+   S G I               P  ++   +P+TG     P   PGE+  R  
Sbjct: 249 PFTAGAIGFS-GLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVR 307

Query: 394 --SQCVMQGYYNNEEETA----RTIDKNG--WLHTGDIGYIDDDGDIFIVDRIKELIKYK 445
             ++ + QGY  NE+ T     R + + G  W  TGD+   D DG  + +DR+ +  ++K
Sbjct: 308 FKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRLGDTFRWK 367

Query: 446 GFQVAPAELEAILLTHPSVEDAAV--VSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVA 503
              V+  E+  +L   PSV +A V  V +P  + G    A + +  ++    +   + +A
Sbjct: 368 SENVSTGEVADVLGAIPSVAEANVYGVKVPGYD-GRAGCAAITLEESSAVETEFTKNLLA 426

Query: 504 S----NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541
                 + +Y     L   + +  + + K  + +L+ + ++ 
Sbjct: 427 KLARKRLPSYAVPLFLRLTEEVATTGNHKQQKGVLRKEGVDP 468

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 81.0 bits (200), Expect = 8e-16
 Identities = 115/528 (21%), Positives = 206/528 (39%), Gaps = 66/528 (12%)

Query: 47   ELYADKVAFV-EAVS----GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEY 101
            +L  D+ A   EAV+     +  TY ++ R     A  L +LG+    +V + +    E 
Sbjct: 1578 QLIEDQAAATPEAVALVFGEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEM 1637

Query: 102  GIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVK-GLGLPIIVLG 160
             +  L I+ AGG +   +P      L   ++ +  +L+++ + +  ++    GL  +VL 
Sbjct: 1638 VVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLD 1697

Query: 161  EERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWIS------KGVMLTHRNLVANLCS 214
            +E         + +E    +    +         ++ S      KG    H  LV  LC+
Sbjct: 1698 QE--------DDWLEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCA 1749

Query: 215  TLFSVVPEMIGQVTTLGLIPFFHIYGITGICCA---TLRNKGKVVMMNRFELRA---FLD 268
            T      +   Q++   ++  F  +            L N  ++V+      R     + 
Sbjct: 1750 T------QEAYQLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQ 1803

Query: 269  ALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPG 328
             +   +VT    VP ++  L++   +DE     L LR V+     L  + L  + ++ P 
Sbjct: 1804 LIERQQVTTLHFVPSMLQQLLQ---MDEQVEHPLSLRRVVCGGEALEVEALRPWLERLPD 1860

Query: 329  VQVQEAYGLTEHSCITLTY-----GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLP 383
              +   YG TE + + +T+      D      G     +G  + NL   +I   +   +P
Sbjct: 1861 TGLFNLYGPTE-TAVDVTHWTCRRKDLE----GRDSVPIGQPIANLST-YILDASLNPVP 1914

Query: 384  SNTPGELCVRSQCVMQGYYNNEEETA-RTI-----DKNGWLH-TGDIGYIDDDGDIFIVD 436
                GEL +    + +GY N    TA R +          L+ TGD+     DG I  + 
Sbjct: 1915 IGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLG 1974

Query: 437  RIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED 496
            RI   +K +GF++   E+EA L     V +A V++  D   G+   A VV  P      D
Sbjct: 1975 RIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQ-DGANGKQLVAYVV--PTDPGLVD 2031

Query: 497  DIMDFVASNVATYKKVRV----------LHFVDGIPKSHSGKIMRRIL 534
            D    VA        ++           L F+  +P + +GK+ R+ L
Sbjct: 2032 DDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKAL 2079

Length = 3956

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 80.2 bits (198), Expect = 1e-15
 Identities = 113/554 (20%), Positives = 206/554 (37%), Gaps = 62/554 (11%)

Query: 12   PLAAAHDEEHIFRSRHP-AVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVA 70
            P  AAH+   +  + +  A   P    +   +        +  A V     +  +YA++ 
Sbjct: 3070 PTLAAHERRQVLHAWNATAAAYPSERLVHQLIEAQVARTPEAPALV--FGDQQLSYAELN 3127

Query: 71   RDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQ 130
            R     A  L ++G+    +V V +    E  +  L ++ AGG +   +P      L   
Sbjct: 3128 RRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYM 3187

Query: 131  VDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDV 190
            ++ +  KL+++ A + E+          L     ++A+     ++  D  G + +N    
Sbjct: 3188 IEDSGVKLLLTQAHLLEQ----------LPAPAGDTAL----TLDRLDLNGYSENNPSTR 3233

Query: 191  KQTD-----LWIS------KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPF---- 235
               +     ++ S      KGV + H  L  +LC    +   E+      L  + F    
Sbjct: 3234 VMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCW--IAEAYELDANDRVLLFMSFSFDG 3291

Query: 236  --FHIYGITGICCATLRNKGKVVMMNRF----ELRAFLDALITHEVTFAPIVPPIILSLV 289
                    T IC   L     VV  N      EL   + A   H ++ A   P  +    
Sbjct: 3292 AQERFLW-TLICGGCL-----VVRDNDLWDPEELWQAIHA---HRISIACFPPAYLQQFA 3342

Query: 290  KDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGD 349
            +D    +       L   +     + P      ++K     +   YG TE       +  
Sbjct: 3343 EDAGGADCA----SLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKC 3398

Query: 350  PANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA 409
              +    +    +G  +    + ++       +P    GEL +    + +GY+     TA
Sbjct: 3399 GGDAVCEAPYAPIGRPVAGRSI-YVLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTA 3457

Query: 410  -RTI-----DKNGWLH-TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHP 462
             R +        G L+ TGD+     DG I  + RI   +K +GF++   E+EA LL HP
Sbjct: 3458 ERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHP 3517

Query: 463  SVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIP 522
            SV +A V++  D   G+   A VV      +  + + D +A+++  Y     L  +  +P
Sbjct: 3518 SVREAVVLAR-DGAGGKQLVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAMP 3576

Query: 523  KSHSGKIMRRILKD 536
               +GK+ R+ L D
Sbjct: 3577 LGPNGKVDRKALPD 3590

Length = 3956

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 79.6 bits (196), Expect = 2e-15
 Identities = 119/555 (21%), Positives = 214/555 (38%), Gaps = 44/555 (7%)

Query: 11   VPLAAAHDEEHIFR--SRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQ 68
            + L  A + + I     R P    P    +   + + A    + +A V     +  +YA+
Sbjct: 1977 LALLDAGERQRILADWDRTPE-AYPRGPGVHQRIAEQAARAPEAIAVV--FGDQHLSYAE 2033

Query: 69   VARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELK 128
            +       A  LR+ G+     V +      E  +  L ++ AGG +   +P   A  L 
Sbjct: 2034 LDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLA 2093

Query: 129  KQVDAADAKLIVSYAPIYEKVKGLGLP--IIVLGEERIESAINWSELIEAADKAGNNFSN 186
              ++ + A L+++   + E+   L LP  +  L  +R     ++ +   A   AG N + 
Sbjct: 2094 YMLEDSGAALLLTQRHLLER---LPLPAGVARLPLDRDAEWADYPDTAPAVQLAGENLAY 2150

Query: 187  DDDVKQTD--LWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPF----FHIYG 240
               V  T     + KGV ++H  LVA+  +       E+      L  + F     H   
Sbjct: 2151 ---VIYTSGSTGLPKGVAVSHGALVAHCQAA--GERYELSPADCELQFMSFSFDGAHEQW 2205

Query: 241  ITGICCATLRNKGKVVMMNRFELRA---FLDALITHEVTFAPIVPPIILSLVKDPIVDEF 297
               +        G  V++   EL       D +  H VT     P  +  L +     E 
Sbjct: 2206 FHPLL------NGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAE---HAER 2256

Query: 298  DLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTY-GDPANPSAG 356
            D     +R        +    L    +    V +   YG TE     L +   P +P  G
Sbjct: 2257 DGRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPC-G 2315

Query: 357  SKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNG 416
            +    +G  L N    +I       L     GEL +  + + +GY N    TA     + 
Sbjct: 2316 AAYVPIGRALGNRRA-YILDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDP 2374

Query: 417  WLH-------TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV 469
            +         TGD+     DG +  + RI   +K +GF++   E+EA L  HP+V +A V
Sbjct: 2375 FSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVV 2434

Query: 470  VSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKI 529
            V+  D  +G+   A VV +  A++   ++  ++A+ +  Y        ++ +P + +GK+
Sbjct: 2435 VAQ-DGASGKQLVAYVVPDDAAEDLLAELRAWLAARLPAYMVPAHWVVLERLPLNPNGKL 2493

Query: 530  MRRILKDKMLEKMRK 544
             R+ L    + ++R+
Sbjct: 2494 DRKALPKPDVSQLRQ 2508

Length = 5163

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 78.9 bits (194), Expect = 2e-15
 Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 15/175 (8%)

Query: 292 PIVDEFDLSKLQ------LRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITL 345
           P+ D+   +K++      +R +++ AAPLA  +  SF +      V + YGLTE    T 
Sbjct: 370 PLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTF 428

Query: 346 TYGDPANPSAGSKKNSVGFILPNLEVKFIN-PETGKSLPSNTP-GELCVRSQCVMQGYYN 403
                + P       +VG  +PN++++  + PE      ++TP GE+C+R + +  GYY 
Sbjct: 429 V----SLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYK 484

Query: 404 NEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAI 457
            E+ T + +  +GWLHTGD+G    +G + I+DR K + K  +G  VA   +E I
Sbjct: 485 REDLT-KEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENI 538

Length = 666

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 77.2 bits (190), Expect = 7e-15
 Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 7/166 (4%)

Query: 377 ETGKSLPSNTPGELCVRSQC--VMQGYYNNEEETARTIDK--NGWLHTGDIGYIDDDGDI 432
           E GK +     G LCV+       +  Y + E    T  K   G+  +GD    D DG  
Sbjct: 470 EKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYY 529

Query: 433 FIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK 492
           ++  R+ ++I   G ++  AE+E+ L++HP   +AAVV +  E  G+   A V +     
Sbjct: 530 WLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVP 589

Query: 493 ESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
            SE+    ++  V + +  +     +H+  G+PK+ SGKIMRRIL+
Sbjct: 590 YSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 635

Length = 666

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 77.3 bits (190), Expect = 1e-14
 Identities = 103/499 (20%), Positives = 200/499 (40%), Gaps = 29/499 (5%)

Query: 43   LQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYG 102
            L + ++     A   A   +  +YA++ R     A  L   G+    +V V +    E  
Sbjct: 3062 LFEEQVERTPDAVALAFGEQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMV 3121

Query: 103  IVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPI-YEKVKGLGLPIIVLGE 161
            +  L I+ AGG +   +P      L   ++ + A+L++S + +     +G+ +  +  G+
Sbjct: 3122 VGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLRLPLAQGVQVLDLDRGD 3181

Query: 162  ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVP 221
            E    A N +      + A   +++    K       KGV + H  L  +LC    +   
Sbjct: 3182 ENYAEA-NPAIRTMPENLAYVIYTSGSTGK------PKGVGIRHSALSNHLCWMQQAY-- 3232

Query: 222  EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIV 281
             +      L    F   + +           G  V++   E       L+    +    V
Sbjct: 3233 GLGVGDRVLQFTTFS--FDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDV 3290

Query: 282  PPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHS 341
                 S+++  + +E       L+ ++     L  DL    ++ F G+ +   YG TE +
Sbjct: 3291 LHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPADLQ---QQVFAGLPLYNLYGPTE-A 3346

Query: 342  CITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGY 401
             IT+T+         +    +G  + N    +I   + + +P    GEL +  + + +GY
Sbjct: 3347 TITVTHWQCVEEGKDAV--PIGRPIANRAC-YILDGSLEPVPVGALGELYLGGEGLARGY 3403

Query: 402  YNNEEETARTIDKNGW------LHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELE 455
            +N    TA     + +        TGD+     DG I  + R+   +K +GF++   E+E
Sbjct: 3404 HNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIE 3463

Query: 456  AILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVL 515
            A LL HP V +A V+++     G    A VV    A +  + +   + +++  Y     L
Sbjct: 3464 ARLLEHPWVREAVVLAV----DGRQLVAYVVPEDEAGDLREALKAHLKASLPEYMVPAHL 3519

Query: 516  HFVDGIPKSHSGKIMRRIL 534
             F++ +P + +GK+ R+ L
Sbjct: 3520 LFLERMPLTPNGKLDRKAL 3538

Length = 5163

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 37/222 (16%)

Query: 303 QLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE-HSCITLTYGDPANPSAGSKKNS 361
            LR V    A ++P LL        G+ V E YGL+E  S ++L      N     +  S
Sbjct: 238 SLRFVAVGGARVSPSLLQRARAL--GLPVYEGYGLSECASVVSL------NTPGADRPGS 289

Query: 362 VGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTG 421
           VG  LP+++V   N            GE+ VR   +M GY      T      + W  TG
Sbjct: 290 VGKPLPHVQVSIAND-----------GEILVRGS-LMLGYLGEPPAT------DDWWATG 331

Query: 422 DIGYIDDDGDIFIVDRIKEL-IKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEI 480
           D+G++D++G ++I  R K L I   G  V+P  +E+ L   P++  A V    D +    
Sbjct: 332 DLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVVFG--DAQ---- 385

Query: 481 PAACVVMNPNAKESEDDIMDFVASNVAT---YKKVRVLHFVD 519
           P    ++ P    S+D +   V    A    Y +++    + 
Sbjct: 386 PFLVALIVPAPNISDDQLEAAVQQINAQLPDYARIKTWVRLR 427

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 76.2 bits (187), Expect = 1e-14
 Identities = 103/493 (20%), Positives = 187/493 (37%), Gaps = 59/493 (11%)

Query: 65  TYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHA 124
           T+ Q+        + LR+ GL  G  V++ LP+  +   + L  +A G +   ANP  H 
Sbjct: 32  THGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHR 91

Query: 125 SELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNF 184
            +        +  L+V+   + ++ +                    +EL+  A +     
Sbjct: 92  DDHALAARNTEPALVVTSDALRDRFQP-------------SRVAEAAELMSEAARVA--- 135

Query: 185 SNDDDVKQTDLW---------ISKGVMLTHRN-----LVANLCSTLFSVVPEMIGQVTTL 230
               +    D                   HR+      V  +C     + PE  G    L
Sbjct: 136 PGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTG----L 191

Query: 231 GLIPFFHIYGITGICCATLRNKGKVVMMN---RFELRAFLDALITHEVTFAPIVPPIILS 287
                +  YG+       L   G  V+ +     E  A L A     V +   VP     
Sbjct: 192 CSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYG--VPNFFAR 249

Query: 288 LVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTY 347
           ++     D F      LR V++A   L   L     + F G+ + +  G TE   +  T+
Sbjct: 250 VIDSCSPDSFR----SLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTE---VGQTF 302

Query: 348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEE 407
              +N     +  ++G +LP  E++ + P+ G +      G+L VR   + +GY+N  + 
Sbjct: 303 --VSNRVDEWRLGTLGRVLPPYEIRVVAPD-GTTAGPGVEGDLWVRGPAIAKGYWNRPDS 359

Query: 408 TARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDA 467
               +   GWL T D   ID DG +    R  +     G  V P E+E +++   +V +A
Sbjct: 360 ---PVANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEA 416

Query: 468 AVVSLPDEEAGEIPAACVVMNPNAKESED-----DIMDFVASNVATYKKVRVLHFVDGIP 522
           AVV++ +        A +V    +  + D     D+   + + ++ +K       VD +P
Sbjct: 417 AVVAVRESTGASTLQAFLV--ATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLP 474

Query: 523 KSHSGKIMRRILK 535
           ++ +GK++R  L+
Sbjct: 475 RTPNGKLVRGALR 487

Length = 705

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 76.9 bits (189), Expect = 2e-14
 Identities = 113/521 (21%), Positives = 200/521 (38%), Gaps = 54/521 (10%)

Query: 47   ELYADKVA-FVEAVS----GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEY 101
            +L A++     +AV+     +  TYA++ R     A AL + G+    +V + +   AE 
Sbjct: 4555 QLVAERARMTPDAVAVVFDEEKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEM 4614

Query: 102  GIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYA------PIYEKVKGLGLP 155
             +  L ++ AGG +   +P      L   ++ + A L+++ +      PI + +  L L 
Sbjct: 4615 MVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLPIPDGLASLAL- 4673

Query: 156  IIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTD--LWISKGVMLTHRNLVANLC 213
                  +R E    +     A     +N +    V  T       KGV ++H +LV +L 
Sbjct: 4674 ------DRDEDWEGFPAHDPAVRLHPDNLAY---VIYTSGSTGRPKGVAVSHGSLVNHLH 4724

Query: 214  STLFSVVPEMIGQVTTLGLIPF----FHIYGITGICCATLRNKGKVVMMN-RFELRAFLD 268
            +T      E+      L  + F     H      +          VV+ +        L 
Sbjct: 4725 ATGER--YELTPDDRVLQFMSFSFDGSHEGLYHPLING-----ASVVIRDDSLWDPERLY 4777

Query: 269  ALIT-HEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFP 327
            A I  H VT     P  +  L +     E D     LR        +A        +   
Sbjct: 4778 AEIHEHRVTVLVFPPVYLQQLAEHA---ERDGEPPSLRVYCFGGEAVAQASYDLAWRALK 4834

Query: 328  GVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTP 387
             V +   YG TE +   L +      + G+    +G  L N    ++       LP    
Sbjct: 4835 PVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSG-YVLDGQLNPLPVGVA 4893

Query: 388  GELCVRSQCVMQGYYNNEEETA-RTI-----DKNGWLH-TGDIGYIDDDGDIFIVDRIKE 440
            GEL +  + V +GY      TA R +        G L+ TGD+     DG I  + R+  
Sbjct: 4894 GELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDH 4953

Query: 441  LIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGE-----IPAACVVMNPNAKESE 495
             +K +GF++   E+EA L  HP+V +A V++       +     +P    + + +  ++E
Sbjct: 4954 QVKIRGFRIELGEIEARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPALADADEAQAE 5013

Query: 496  --DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
              D++   +   +  Y     L F+  +P + +GK+ R+ L
Sbjct: 5014 LRDELKAALRERLPEYMVPAHLVFLARMPLTPNGKLDRKAL 5054

Length = 5163

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 75.3 bits (185), Expect = 3e-14
 Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 26/212 (12%)

Query: 292 PIVDEFDLSKLQ------LRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITL 345
           P +D     K++      +R +++ AAPL P  +  F +      + + YGLTE      
Sbjct: 367 PRLDRLVFDKIKEGLGGRVRLLLSGAAPL-PRHVEEFLRVTSCSVLSQGYGLTESCGGCF 425

Query: 346 TYGDPANPSAGSKKNSVGFILPNLEVKFIN-PETGKSLPSNTP-GELCVRSQCVMQGYYN 403
           T         G+    VG  +  +E +  + PE G    S+ P GE+C+R   +  GY+ 
Sbjct: 426 TSIANVFSMVGT----VGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHK 481

Query: 404 NEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHP 462
            ++ T   +  +GW HTGDIG    +G + I+DR K + K  +G  VA   LE      P
Sbjct: 482 RQDLTEEVL-IDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCP 540

Query: 463 ----------SVEDAAV-VSLPDEEAGEIPAA 483
                     S E   V V +PD +A E  AA
Sbjct: 541 LIASIWVYGNSFESFLVAVVVPDRQALEDWAA 572

Length = 660

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 75.2 bits (185), Expect = 3e-14
 Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 29/266 (10%)

Query: 294 VDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKF------PGVQVQEAYGLTEHSC----- 342
           V + DL  L  R  +    P+  D    F           G     +YGL E +C     
Sbjct: 266 VSDVDLGAL--RVALNGGEPVDCDGFERFATAMAPFGFDAGA-AAPSYGLAESTCAVTVP 322

Query: 343 ---ITLTYGDPANPSAGSKKNS--VGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCV 397
              I L   +         +    +G  +P +EV+    +    +     GE+ +R   +
Sbjct: 323 VPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASM 382

Query: 398 MQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAI 457
           M GY          ID + W  TGD+GY+ D G + +  R KELI   G  + P E+E +
Sbjct: 383 MSGYLGQA-----PIDPDDWFPTGDLGYLVDGG-LVVCGRAKELITVAGRNIFPTEIERV 436

Query: 458 LLTHPSVEDAAVVSLPDEEAGEIPAACVVMN---PNAKESEDDIMDFVASNVATYKKVRV 514
                 V + AVV++   E    P   +      P+   +  +++  VAS         V
Sbjct: 437 AAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDEAGARSEVVQRVASECGVVPSDVV 496

Query: 515 LHFVDGIPKSHSGKIMRRILKDKMLE 540
                 +P++ SGK +RR+   + LE
Sbjct: 497 FVAPGSLPRTSSGK-LRRLAVKRSLE 521

Length = 525

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 132/539 (24%), Positives = 203/539 (37%), Gaps = 102/539 (18%)

Query: 46  AELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
           AE Y   +A+     G+  TY Q+   +   A  ++   L K   +IV       YG + 
Sbjct: 10  AETYPQTIAY--RYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIV-------YGHME 60

Query: 106 LGIMAAGGVFSGANPTAHA---------SELKKQV-DAADAKLIVSYAPIYEKVKGLGLP 155
             ++ A   F G+  + HA         SE  + + +AA  +L++  A          L 
Sbjct: 61  PHMLVA---FLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAE---------LS 108

Query: 156 IIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTD----LWIS------KGVMLTH 205
           I  +G + I         +E A+ +G   S D  VK  D    ++ S      KGV ++H
Sbjct: 109 IDAVGTQIITL-----SALEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISH 163

Query: 206 RNLVA--NLCSTLFSVVPEMIGQVTTLGLIPF------FHIYG--ITGICCATLRNKGKV 255
            NLV+  N     F +          L   PF        +Y    +G    TL    K 
Sbjct: 164 DNLVSFTNWMLADFPL----SEGKQFLNQAPFSFDLSVMDLYPCLASG---GTLHCLDKD 216

Query: 256 VMMNRFELRAFLDALITHEVTFAPIVPPIIL-----SLVKDPIVDEFDLSKLQLRAVMTA 310
           +  N   L   L     +     P    + L     +    P +  F     +L  V TA
Sbjct: 217 ITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEEL-PVKTA 275

Query: 311 AAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSC------ITLTYGDPANPSAGSKKNSVGF 364
            A L         ++FP   +   YG TE +       IT    D   P        +GF
Sbjct: 276 KALL---------ERFPKATIYNTYGPTEATVAVTSVKITQEILD-QYPRL-----PIGF 320

Query: 365 ILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI--DKNGW-LHTG 421
             P++ + FI  E G+ LP    GE+ +    V +GY NN E+TA      +      TG
Sbjct: 321 AKPDMNL-FIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTG 379

Query: 422 DIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSL--PDEEAGE 479
           D G I  DG +F   R+   IK  G+++   ++E  L     +E A VV     D +   
Sbjct: 380 DAGTI-TDGQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEY 438

Query: 480 IPAACVVMNPNAKESEDD----IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
           + AA +V      E E      I   +  ++  Y   R   + D +P + +GKI R+ L
Sbjct: 439 LIAA-IVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKAL 496

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 75.0 bits (185), Expect = 4e-14
 Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 20/193 (10%)

Query: 357 SKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQ----CVMQGYYNNEEETART- 411
           ++  S G  +    VK +N  TG+    N  G L +       C MQ  + +++   +T 
Sbjct: 408 TRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGC-MQTVWGDDDRFVKTY 466

Query: 412 ---IDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAA 468
                +  +  T D G  D DG  FI+ R  ++I   G ++   E+E  + +HP+V + A
Sbjct: 467 WSLFGRQVY-STFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVA 525

Query: 469 VVSLPDEEAGEIPAA-CVVMNP-------NAKESEDDIMDFVASNV-ATYKKVRVLHFVD 519
           VV + D   G++  A  V  +             E +IM  V S + A  +  RV  FV 
Sbjct: 526 VVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARV-WFVS 584

Query: 520 GIPKSHSGKIMRR 532
            +PK+ SGK++RR
Sbjct: 585 ALPKTRSGKLLRR 597

Length = 629

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 75.0 bits (185), Expect = 5e-14
 Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 25/246 (10%)

Query: 304  LRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVG 363
            LR V   A  +  +   ++ +KF G+++ E YG+TE + +        N    +K  +VG
Sbjct: 909  LRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGVTETAPVI-----ALNTPMHNKAGTVG 962

Query: 364  FILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDI 423
             +LP +E + + P  G     +  G L VR   VM GY   E         +GW  TGDI
Sbjct: 963  RLLPGIEYR-LEPVPG----IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDI 1017

Query: 424  GYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAA 483
              ID++G I I  R K   K  G  ++ A +E +          A VS+PD   GE    
Sbjct: 1018 VTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGE---R 1074

Query: 484  CVVMNPNAKESEDDIMDFV----ASNVATYKKVRVLHFVDGIPKSHSGKI----MRRILK 535
             +++   +  +    +       AS +    ++     +D IP   +GKI    + ++ +
Sbjct: 1075 IILLTTASDATRAAFLAHAKAAGASELMVPAEIIT---IDEIPLLGTGKIDYVAVTKLAE 1131

Query: 536  DKMLEK 541
            +   + 
Sbjct: 1132 EAAAKP 1137

Length = 1140

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 73.8 bits (181), Expect = 9e-14
 Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 26/205 (12%)

Query: 349 DPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQC---VMQGYYNNE 405
           D      GS     G  +    ++ ++  TG+    N  G L V        +   + ++
Sbjct: 403 DLKPVKLGSP----GLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDD 458

Query: 406 EETARTIDKNGWLH-------TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAIL 458
              AR + K  W H       + D G  D+DG  FI+ R  ++I   G ++   E+E  +
Sbjct: 459 ---ARFL-KTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESV 514

Query: 459 LTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDD--------IMDFVASNVATYK 510
            +HPSV + AVV + DE  G++     ++  +    +          +MD V   +    
Sbjct: 515 SSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVA 574

Query: 511 KVRVLHFVDGIPKSHSGKIMRRILK 535
           +   ++FV  +PK+ SGK++RR ++
Sbjct: 575 RPARVYFVAALPKTRSGKLLRRSIQ 599

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 72.2 bits (178), Expect = 2e-13
 Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 25/177 (14%)

Query: 335 YGLTE-HSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVR 393
           YGLTE  S +       A  + G     VG  LP  EVK ++            GE+ +R
Sbjct: 271 YGLTEMASTVC------AKRADG--LAGVGSPLPGREVKLVD------------GEIWLR 310

Query: 394 SQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAE 453
              +  GY+   +      +  GW  T D G   + G++ I+ R+  L    G  + P E
Sbjct: 311 GASLALGYWRQGQLVPLV-NDEGWFATRDRGEWQN-GELTILGRLDNLFFSGGEGIQPEE 368

Query: 454 LEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYK 510
           +E ++  HP V+   VV + D E G+ P A V    +++ +  ++ +++   +A ++
Sbjct: 369 IERVINQHPLVQQVFVVPVADAEFGQRPVAVVES--DSEAAVVNLAEWLQDKLARFQ 423

Length = 458

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 111/518 (21%), Positives = 203/518 (39%), Gaps = 65/518 (12%)

Query: 61  GKAYTYAQVARDTRGFAKALRS-LGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGAN 119
           G+  TYA+V + +   A+AL +  GL+ G  V ++L N   +  + LG+   G   +  N
Sbjct: 1   GETVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLN 60

Query: 120 PTAHASELKKQVDAADAKLIV-------SYAPIYEKVKGLGLPIIVLGEERI-ESAINWS 171
               +  L        A+++V       +   I   ++ +G+ +  L      E  I+  
Sbjct: 61  TNIRSGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVFYLSHTSPPEGVISLL 120

Query: 172 ELIEAA--DKAGNNFSNDDDVKQTDLWI--------SKGVMLTHRNLVANLCSTLFSVVP 221
             ++AA  +    +  +   ++ T L+I         K   ++H  ++   CS + S+  
Sbjct: 121 AKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQ--CSGMLSLCG 178

Query: 222 EMIGQVTTLGLIPFFH----IYGITGICC----ATLRNKGKVVMMNRFELRAFLDALITH 273
                V    L P +H    + GI G  C    ATL      V+  +F    F D    +
Sbjct: 179 VTADDVVYTTL-PLYHSSGALLGIVG--CIGLGATL------VLKPKFSASQFWDDCRKY 229

Query: 274 EVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQE 333
            VT    +  ++  L   P  D     K++L         L PD+   F ++F  + V E
Sbjct: 230 NVTVFQYIGELLRYLCNQPQSDNDRDHKVRL----AIGNGLRPDVWREFLRRFGPIHVWE 285

Query: 334 AYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLE-VKF-------INPETGKSLPSN 385
            Y  TE +   + Y       A  + + +  +L   E +K+       +    G  +P  
Sbjct: 286 TYASTEGNIGFINY--TGRVGAVGRASCLYKLLSPFELIKYDVEKDEPVRDAQGFCIPVG 343

Query: 386 T--PGELC--VRSQCVMQGYYNNEEETARTIDKN------GWLHTGDIGYIDDDGDIFIV 435
              PG L   + SQ    GY    E T + + ++       + +TGD+   D    ++  
Sbjct: 344 KGEPGLLISKITSQSPFLGYAGPRELTEKKLLRDVFKKGDVYFNTGDLLVQDRQNFLYFH 403

Query: 436 DRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV--VSLPDEEAGEIPAACVVMNPNAKE 493
           DR  +  ++KG  VA  E+  IL     +++  V  V++P  E G    A V++ P  + 
Sbjct: 404 DRTGDTFRWKGENVATTEVADILTMVDFIQEVNVYGVTVPGHE-GRAGMAAVILKPGTEF 462

Query: 494 SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMR 531
             + +   V   +  Y + R L   D +  + + K  +
Sbjct: 463 DLEKLYQHVREFLPAYARPRFLRIQDSMEVTGTFKQQK 500

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 72.5 bits (178), Expect = 3e-13
 Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 29/190 (15%)

Query: 294 VDEFDLSKLQL---RAVMTAAAPLAPDLLSSFEKKFPGVQVQE-----AYGLTEHSC--- 342
           V E  L +L L   R   + + P+  D L  F +KF            +YGL E +    
Sbjct: 279 VSESALERLDLSRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSFFASYGLAEATLFVS 338

Query: 343 -------ITLTYGDP-------ANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPG 388
                  I     D        A P  GS   S G   P   V  ++P++ + L  N  G
Sbjct: 339 GGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIVDPQSLEVLGDNRVG 398

Query: 389 ELCVRSQCVMQGYYNNEEETARTI---DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYK 445
           E+      +  GY+ N E +A+T    D   WL TGD+G++  DG++F+  R+K+++  +
Sbjct: 399 EIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLGFL-RDGELFVTGRLKDMLIVR 457

Query: 446 GFQVAPAELE 455
           G  + P ++E
Sbjct: 458 GHNLYPQDIE 467

Length = 4334

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 72.1 bits (177), Expect = 5e-13
 Identities = 68/269 (25%), Positives = 118/269 (43%), Gaps = 16/269 (5%)

Query: 273  HEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQ 332
            + VT    VPP++   + +P+          LR + +    L  +L +   ++ P VQ+ 
Sbjct: 1363 YGVTTLHFVPPLLQLFIDEPLAAACT----SLRRLFSGGEALPAELRNRVLQRLPQVQLH 1418

Query: 333  EAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCV 392
              YG TE + I +T+      +   +++ +G  L N+  + ++ E    LP    GELC+
Sbjct: 1419 NRYGPTE-TAINVTHWQCQ--AEDGERSPIGRPLGNVLCRVLDAEL-NLLPPGVAGELCI 1474

Query: 393  RSQCVMQGYYNNEEETAR--TIDKNG-----WLHTGDIGYIDDDGDIFIVDRIKELIKYK 445
                + +GY      TA     D  G        TGD    + DG +  + R+ + +K +
Sbjct: 1475 GGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLR 1534

Query: 446  GFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASN 505
            GF+V P E++A LL  P V  AAV+ + +  AG             +   + +   +A+ 
Sbjct: 1535 GFRVEPEEIQARLLAQPGVAQAAVL-VREGAAGAQLVGYYTGEAGQEAEAERLKAALAAE 1593

Query: 506  VATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
            +  Y     L  +D +P   SGK+ RR L
Sbjct: 1594 LPEYMVPAQLIRLDQMPLGPSGKLDRRAL 1622

Length = 4334

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 70.3 bits (173), Expect = 9e-13
 Identities = 100/477 (20%), Positives = 163/477 (34%), Gaps = 125/477 (26%)

Query: 18  DEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAY---TYAQVARDTR 74
           D     RS  P    P    L D ++  A+   D+V   E  +   +   TYA+     R
Sbjct: 23  DGTIYLRSAEPLGDYPR--RLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVR 80

Query: 75  GFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPT-----------AH 123
             A+AL   GL   + ++++  N  E+ ++AL  M AG  ++  +P             H
Sbjct: 81  AIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRH 140

Query: 124 ASEL--KKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESA-INWSELIEAADKA 180
             EL     V A D      +A     V    + ++ +       A   ++ L+     A
Sbjct: 141 VLELLTPGLVFADDGAA---FARALAAVVPADVEVVAVRGAVPGRAATPFAALLATPPTA 197

Query: 181 GNNFSND----DDVKQTDLWIS------KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTL 230
             + ++     D + +  L+ S      K V+ THR L AN          +M+ Q    
Sbjct: 198 AVDAAHAAVGPDTIAKF-LFTSGSTGLPKAVINTHRMLCANQ---------QMLAQT--- 244

Query: 231 GLIPFF--------------------HIYGIT----------------GICCATLRNKGK 254
              PF                     H  GI                 G    TLRN  +
Sbjct: 245 --FPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLRE 302

Query: 255 VVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPL 314
           +     F +    + L+                L +D  +     S+L+L  +  A A L
Sbjct: 303 ISPTVYFNVPKGWEMLVPA--------------LERDAALRRRFFSRLKL--LFYAGAAL 346

Query: 315 APDLLSSFEKKFPGVQVQE---------AYGLTEHSCITLTYGDPANPSAGSKKNSVGFI 365
           + D+    ++    V               G+TE +  + T+       AG    ++G  
Sbjct: 347 SQDVWDRLDR----VAEATCGERIRMMTGLGMTE-TAPSATFTTGPLSRAG----NIGLP 397

Query: 366 LPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGD 422
            P  EVK + P  GK        E+ V+   V  GY+   E TA   D+ G+  +GD
Sbjct: 398 APGCEVKLV-PVGGKL-------EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGD 446

Length = 614

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 54/210 (25%), Positives = 83/210 (39%), Gaps = 19/210 (9%)

Query: 304 LRAVMTAAAPLAPDLLSSFEKKFP-GVQVQEAYGLTEH---SCITLT--YGDPANPSAGS 357
           LR V++A AP+   ++  F    P   ++   YG TE    S I            +   
Sbjct: 290 LRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNG 349

Query: 358 KKNSVGFILPNLEVKFINPETG--------KSLPSNTPGELCVRSQCVMQGYYNNEEET- 408
               VG  +  +EV+ I               L +   GE+ V    V + YYN  E T 
Sbjct: 350 AGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATR 409

Query: 409 -ARTIDKNG--WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVE 465
            A+  D  G  W   GD+GY+D  G ++   R    ++  G  +     E I  THP V+
Sbjct: 410 LAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVK 469

Query: 466 DAAVVSLPDEEAGEIPAACVVMNPNAKESE 495
            +A+V +      + P  CV + P    S+
Sbjct: 470 RSALVGVG-VPGAQRPVLCVELEPGVACSK 498

Length = 552

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 67.7 bits (166), Expect = 5e-12
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 2/95 (2%)

Query: 51  DKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA 110
           D++A V+   G++ TY ++   +   AKAL +LGL  G  V V+ P  AEY ++ L I  
Sbjct: 1   DRIALVD--GGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWR 58

Query: 111 AGGVFSGANPTAHASELKKQVDAADAKLIVSYAPI 145
           AGGV    NP+  A+EL   +  +   L+V  A I
Sbjct: 59  AGGVAVPLNPSYPAAELAYILSDSQPSLLVDPALI 93

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 67.2 bits (165), Expect = 8e-12
 Identities = 23/79 (29%), Positives = 42/79 (53%)

Query: 62  KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPT 121
           +  T+A++A   R  A  L +LG++ G  V ++  N  E+ I  L I+AAG V     PT
Sbjct: 4   QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63

Query: 122 AHASELKKQVDAADAKLIV 140
           +   E+   ++ + A+++ 
Sbjct: 64  SSPEEVAYILNDSGARVVF 82

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 67.2 bits (165), Expect = 8e-12
 Identities = 64/224 (28%), Positives = 95/224 (42%), Gaps = 21/224 (9%)

Query: 324 KKFPGVQVQEAYGLTEH----SCITLTYGDPANPSAGSKKNS--VGFILPNLEVKFINPE 377
           ++FP   +   YG TE     + I +T           +     +G+  P+  +  I  E
Sbjct: 282 ERFPSATIYNTYGPTEATVAVTSIEIT------DEMLDQYKRLPIGYAKPDSPL-LIIDE 334

Query: 378 TGKSLPSNTPGELCVRSQCVMQGYYNNEEETAR---TIDKNGWLHTGDIGYIDDDGDIFI 434
            G  LP    GE+ +    V +GY NN E+TA    T D     HTGD GY+ +DG +F 
Sbjct: 335 EGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFY 393

Query: 435 VDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES 494
             RI   IK  G+++   E+E  L     VE A VV    +   +   A VV      E 
Sbjct: 394 QGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFER 453

Query: 495 EDD----IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
           E +    I   +   +  Y   R   + D +P + +GKI R+ L
Sbjct: 454 EFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKAL 497

Length = 503

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.6 bits (163), Expect = 2e-11
 Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 28  PA-VPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLR 86
           PA +   +  +L D + +    YAD+ AF+    GKA TY ++   +R  A  L+S GL 
Sbjct: 14  PAEIDASQYPSLADLLEESFRQYADRPAFI--CMGKAITYGELDELSRALAAWLQSRGLA 71

Query: 87  KGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV 140
           KG  V +++PNV +Y +    ++ AG V    NP     EL+ Q+  + A+ IV
Sbjct: 72  KGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIV 125

Length = 557

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 108/505 (21%), Positives = 182/505 (36%), Gaps = 114/505 (22%)

Query: 65  TYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANP---- 120
           TYA+  R  R  A+AL  LGL   + ++++  N  E+ ++AL  M AG   +  +P    
Sbjct: 27  TYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYSL 86

Query: 121 --TAHASELKKQVDAADAKLI-VSYAPIYEK----VKGLGLPIIVLGEERIESAINWSEL 173
                A +L+   D      +       + +    +   G+P++ +       AI ++ L
Sbjct: 87  LSKDFA-KLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVVAVRGAPGGPAIAFAAL 145

Query: 174 IEAADKAGNNFSND----DDVKQTDLWIS------KGVMLTHRNLVANLCSTLFSVVPEM 223
           +     A  + +      D V +  L+ S      K V+ THR L AN           M
Sbjct: 146 LATPPTAAVDAAFAAVGPDTVAKY-LFTSGSTGLPKAVINTHRMLCANQ---------AM 195

Query: 224 IGQVTT---------LGLIPFFHIYG---ITGICCA-------------------TLRNK 252
           I Q            +  +P+ H +G      +                      TLRN 
Sbjct: 196 IAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNGGTLYIDDGKPVPGLFEETLRNL 255

Query: 253 GKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAA 312
            +V     F +    + L+                L +D  +      +L+L  +  A A
Sbjct: 256 REVSPTVYFNVPKGFEMLVDA--------------LERDAALRRRFFKRLRL--LFYAGA 299

Query: 313 PLAPDLLSSFEK---KFPG--VQVQEAYGLTEHS-CITLTYGDPANPSAGSKKNSVGFIL 366
            L  D+    +    +  G  + +    G TE +   T  +       +G     +G   
Sbjct: 300 ALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWP--TDRSG----VIGLPA 353

Query: 367 PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIG-Y 425
           P  E+K + P  GK        E+ V+   V  GY+ + E TA   D+ G+   GD   +
Sbjct: 354 PGTELKLV-PNGGKL-------EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGDAVRF 405

Query: 426 IDDD----GDIFIVD-RIKELIKYKG---FQVAPAELEAILLTHPSVEDAAVVSLPDEEA 477
           +D D    G +F  D R+ E  K        V    +  +    P V+DA V     +E 
Sbjct: 406 VDPDDPERGLVF--DGRVAEDFKLASGTWVSVGALRVALVAALAPLVQDAVVAGHDRDEI 463

Query: 478 GEI----PAACVVMNPNAKESEDDI 498
           G +     AAC  +   A+ S +D+
Sbjct: 464 GLLVFPNLAACRRLAGLAEASAEDV 488

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 71/294 (24%), Positives = 118/294 (40%), Gaps = 64/294 (21%)

Query: 295 DEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKF-----PGVQVQEAYGLTEHSCITLTYGD 349
           D+ DLS +    ++  + P++ D +++F K F     P    + +YG+ E +    T   
Sbjct: 313 DDIDLSNV---VLIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAP 369

Query: 350 PANPSA----------------------GSKKNSVGFILPNLEVKFINPETGKSLPSNTP 387
            A PS                            S G +  +     ++P+TG  LP    
Sbjct: 370 DAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEV 429

Query: 388 GELCVRSQCVMQGYYNNEEETARTI------------------DKNGWLHTGDIG-YIDD 428
           GE+ +    + +GY+   EET RT                   D   WL TGD+G Y+  
Sbjct: 430 GEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-- 487

Query: 429 DGDIFIVDRIKELIKYKGFQVAPAELEA-ILLTHPSVED--AAVVSLPDEEAGEIPAACV 485
           DG+++I  RI +LI   G    P ++EA +    P V        ++P E+   +    +
Sbjct: 488 DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERL---VI 544

Query: 486 VMNPNAKESEDD---IMDFVASNVATYKKVRV--LHFVDG--IPKSHSGKIMRR 532
           V    A  S  D    +D + + V+    + V  +  V    IP++ SGK+ RR
Sbjct: 545 VAERAAGTSRADPAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARR 598

Length = 612

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 108/514 (21%), Positives = 193/514 (37%), Gaps = 85/514 (16%)

Query: 61  GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANP 120
            + +T+ ++   +   A   ++ G R G VV + + N  E+  + LG+   G   +  N 
Sbjct: 1   DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINS 60

Query: 121 TAHASELKKQVDAADAK-LIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSEL--IEAA 177
                 L   +  + AK LI +             P       R        +L  I  +
Sbjct: 61  NLRLESLLHCITVSKAKALIFNLLDPLLTQSSTEPPSQDDVNFR-------DKLFYIYTS 113

Query: 178 DKAGNNFSNDDDVKQTDLWISKGVMLTH-RNL-VANLCSTLFSVVPEMIGQVTTLGLIPF 235
              G                 K  ++ H R   +A      F + PE +        +P 
Sbjct: 114 GTTGL---------------PKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDC----LPL 154

Query: 236 FHIYG-ITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIV 294
           +H  G I G+  A L +   VV+  +F    F D  + +  T    +  I   L+  P  
Sbjct: 155 YHSAGGIMGVGQALL-HGSTVVIRKKFSASNFWDDCVKYNCTIVQYIGEICRYLLAQPPS 213

Query: 295 DEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPS 354
           +E    K  +R  +     L P +   F ++F   Q+ E YG TE +            S
Sbjct: 214 EE--EQKHNVR--LAVGNGLRPQIWEQFVRRFGIPQIGEFYGATEGNS-----------S 258

Query: 355 AGSKKNSVG------FILPNL-EVKFI--NPETGKSLPSNTPGELCVRSQ----CVMQGY 401
             +  N VG       ILP++  ++ I  + +TG+         LC+  Q     ++ G 
Sbjct: 259 LVNIDNHVGACGFNSRILPSVYPIRLIKVDEDTGE--LIRDSDGLCIPCQPGEPGLLVGK 316

Query: 402 ------------YNNEEETARTIDKNGWLH------TGDIGYIDDDGDIFIVDRIKELIK 443
                       Y NE  T + I ++ +        +GD+  +D+ G ++  DR  +  +
Sbjct: 317 IIQNDPLRRFDGYVNEGATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFR 376

Query: 444 YKGFQVAPAELEAILLTHPSVEDAAV--VSLPDEEAGEIPAACVVMNPNAKESEDDIMDF 501
           +KG  V+  E+E IL     +ED  V  V +P  E G    A +V +P  K   D     
Sbjct: 377 WKGENVSTTEVEGILSNVLGLEDVVVYGVEVPGVE-GRAGMAAIV-DPERKVDLDRFSAV 434

Query: 502 VASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
           +A ++  Y + + +  +  + K+ + K+ +  L+
Sbjct: 435 LAKSLPPYARPQFIRLLPEVDKTGTFKLQKTDLQ 468

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 8/117 (6%)

Query: 329 VQVQEAYGLTEHS-CITLTYGDPANPSAGSKKNSVGF-ILPNLEVKFINPETGKSLPSNT 386
           V   + YGLTE +  I + + D  N        S+G  I PN + K    ET K+  +  
Sbjct: 487 VNYYQGYGLTETTGPIFVQHADDNNT------ESIGGPISPNTKYKVRTWETYKATDTLP 540

Query: 387 PGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIK 443
            GEL ++S  +  GY+  +E+T     ++G+  TGDI  I+ +G +  +DR K L+K
Sbjct: 541 KGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVK 597

Length = 746

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 60.4 bits (147), Expect = 8e-10
 Identities = 23/77 (29%), Positives = 41/77 (53%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH 123
           +T+A++  ++   A  L+ LG+ +G  V V+LP V E   V LG +  G VF        
Sbjct: 1   WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60

Query: 124 ASELKKQVDAADAKLIV 140
             +++ +++ A A+ IV
Sbjct: 61  PKDIRYRLERAGARAIV 77

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 60.3 bits (147), Expect = 9e-10
 Identities = 26/80 (32%), Positives = 38/80 (47%)

Query: 61  GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANP 120
           G+ YTYA++A      A  L +LG+R G  V ++L N  E+      +   G V    N 
Sbjct: 1   GRRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINT 60

Query: 121 TAHASELKKQVDAADAKLIV 140
                EL   +D + A+LIV
Sbjct: 61  ALRGEELAHILDHSGARLIV 80

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 61.3 bits (149), Expect = 9e-10
 Identities = 64/258 (24%), Positives = 111/258 (43%), Gaps = 19/258 (7%)

Query: 302  LQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNS 361
            L +R  +T    L  + L    + F       AYG TE   + L    P     G+    
Sbjct: 2448 LPVRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVP 2507

Query: 362  VGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLH-- 419
            +G ++    V +I       +P    GEL V    + QGY++    TA     + +    
Sbjct: 2508 IGRVV-GARVAYILDADLALVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADG 2566

Query: 420  -----TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPD 474
                 TGD+  +  DG +  V RI   +K +GF++   E+E+ LL HP+V +A V++L D
Sbjct: 2567 GRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLLEHPAVREAVVLAL-D 2625

Query: 475  EEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRV--------LHFVDGIPKSHS 526
              +G+  A  +V +  A + ++       + +  + K ++        L  +D +P + +
Sbjct: 2626 TPSGKQLAGYLV-SAVAGQDDEAQAALREA-LKAHLKQQLPDYMVPAHLILLDSLPLTAN 2683

Query: 527  GKIMRRILKDKMLEKMRK 544
            GK+ RR L     E  R+
Sbjct: 2684 GKLDRRALPAPDPELNRQ 2701

Length = 4334

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 11/139 (7%)

Query: 20  EHIFRSRHPA-VPVPENV----TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTR 74
           E ++ +R+PA VP   N     +L D   Q    YAD+ AF+    G+  T+ ++   +R
Sbjct: 2   EKVWLNRYPADVPAEINPDRYQSLVDMFEQAVARYADQPAFINM--GEVMTFRKLEERSR 59

Query: 75  GFAKALRS-LGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDA 133
            FA  L++ LGL+KG  V +++PN+ +Y I   GI+ AG +    NP     EL+ Q++ 
Sbjct: 60  AFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLND 119

Query: 134 ADAKLIV---SYAPIYEKV 149
           + AK IV   ++A   EKV
Sbjct: 120 SGAKAIVIVSNFAHTLEKV 138

Length = 560

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 60  SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV----F 115
           S + +TY+++AR+    A  L +LGL KG  V + +P + E  +  L I   G +    F
Sbjct: 4   SVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIF 63

Query: 116 SGANPTAHASELKKQVDAADAKLIV 140
           SG  P A A+ L+     A+AK+++
Sbjct: 64  SGFGPDAVATRLQ----DAEAKVLI 84

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 109/494 (22%), Positives = 176/494 (35%), Gaps = 133/494 (26%)

Query: 56  VEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF 115
           +E V+    +Y ++ + T    + L      +G+ + ++LPN      V  G      + 
Sbjct: 224 IEDVNFTPDSYRKLLKKTLFVGRILEKYS-VEGERIGLMLPNATISAAVIFGASLRRRIP 282

Query: 116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIE 175
           +  N TA    L   + AA+ K I +     +K K   LP      E++     W  L +
Sbjct: 283 AMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLP------EQLTQV-RWVYLED 335

Query: 176 AADKAGNNFSNDDDVKQTD-LWI-------------------------------SKGVML 203
                       DDV   D LWI                                KGV+ 
Sbjct: 336 L----------KDDVTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVH 385

Query: 204 THRNLVANLCSTLFSVVPEMIGQVTT-------LGLIPFFHIYGITGICCATLRNKGKVV 256
           +H++L+AN+         E I  +         +  +P FH +G+T              
Sbjct: 386 SHKSLLANV---------EQIKTIADFTPNDRFMSALPLFHSFGLT-------------- 422

Query: 257 MMNRFELRAFLDALITHEVTF---APIVPPIILSLVKDP-----------------IVDE 296
                        L+T    F   +P+   I+  LV D                    + 
Sbjct: 423 -------VGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANP 475

Query: 297 FDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAG 356
           +D ++L  R V+  A  L       ++ KF G+++ E YG+TE  C  +      N    
Sbjct: 476 YDFARL--RYVVAGAEKLQESTKQLWQDKF-GLRILEGYGVTE--CAPVV---SINVPMA 527

Query: 357 SKKNSVGFILPNLEVKFINPETGKSLPSNTPG-ELCVRSQCVMQGYYNNEE--------- 406
           +K  +VG ILP ++ + +      S+P    G  L ++   +M GY   E+         
Sbjct: 528 AKPGTVGRILPGMDARLL------SVPGIEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTA 581

Query: 407 ETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAI-LLTHPSVE 465
           E AR   + GW  TGDI   D+ G + I  R K   K  G  V+   +E + L   P  +
Sbjct: 582 ENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQ 641

Query: 466 DAAVVSLPDEEAGE 479
            A  +   D   GE
Sbjct: 642 HATAIK-SDASKGE 654

Length = 718

>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009)

 Score = 49.0 bits (118), Expect = 5e-08
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 509 YKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541
           Y   R + FVD +PK+ SGKI+RR+L+   L +
Sbjct: 1   YAVPREVEFVDELPKTRSGKILRRLLRAIALGE 33

This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.1 bits (133), Expect = 6e-08
 Identities = 55/222 (24%), Positives = 84/222 (37%), Gaps = 67/222 (30%)

Query: 374 INPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI-----------------DKNG 416
           ++PET   LP    GE+ +    +  GY+   EETA T                  D   
Sbjct: 405 VDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDAL 464

Query: 417 WLHTGDIG-YIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDA-------- 467
           W+ TGD G Y   DG+++I  R+K+L+   G    P +LE       + ++A        
Sbjct: 465 WVRTGDYGVYF--DGELYITGRVKDLVIIDGRNHYPQDLEY------TAQEATKALRTGY 516

Query: 468 -AVVSLPDEEAGEIPAACVVMNPNAKESEDD------------------------IMDFV 502
            A  S+P   A ++P   V  + +A    D                         I D +
Sbjct: 517 VAAFSVP---ANQLPQV-VFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQPIADDI 572

Query: 503 ASNVATYKKVRV----LHFVDGIPKSHSGKIMRRILKDKMLE 540
            + +A    V V    L     IP++ SGKI RR  +   L+
Sbjct: 573 RAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLD 614

Length = 631

>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2)

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 36/208 (17%)

Query: 362 VGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETART---------- 411
            G ++P  ++  +NP+T     ++  GE+ V S      YY     T  T          
Sbjct: 355 SGMVMPGAQMCIVNPDTPPLCRTDEIGEIWVNSSANATSYYGLTGMTKNTFEVFPNSSSD 414

Query: 412 -IDKNGWLHTGDIGYI----------DDDGDIFIVDRIKELIKYKGFQVAPAELEA-ILL 459
            I +N ++ TG +G++           D G +F+V  I E ++  G +  P ++EA +L 
Sbjct: 415 GIGENPYVRTGLLGFVGPTSHSMGPVVDMGLLFVVGSIDETLEVSGLRHNPDDIEATVLR 474

Query: 460 THPSVEDA--AVVSLPDEEAGEIPAACVVMNPNAKESED-DIMDFVASNVATYKKV--RV 514
            HP +     AV S+       +    VV      E E    +  V + + +  +V   V
Sbjct: 475 VHPMIYRGRIAVFSV----TERV---VVVAEQRGSEEESFQWVPRVLNAILSEHQVIVYV 527

Query: 515 LHFVDG--IPKSHSGKIMRRILKDKMLE 540
           +  V    +PK+  G+  R   +   LE
Sbjct: 528 VALVPPGTLPKTPLGEKQRSETRASFLE 555

Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 51.8 bits (125), Expect = 6e-07
 Identities = 44/200 (22%), Positives = 67/200 (33%), Gaps = 62/200 (31%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH 123
            +Y +V          LR+LGL+ G  + +   N  E+ I      +   V         
Sbjct: 6   ISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLV--------- 56

Query: 124 ASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAIN-------------- 169
                          IV   P+Y+           LGEE IE  +N              
Sbjct: 57  ---------------IV---PLYD----------TLGEEAIEYILNETEISIVFCDAVKV 88

Query: 170 --WSELIE--AADKAGNNFSNDDDVKQTDLWIS------KGVMLTHRNLVANLCSTLFSV 219
             + EL E    +K        +D+  T ++ S      KGVMLTH N+VA +      V
Sbjct: 89  YSFEELEELGKKNKVPPTPPKPEDL-ATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIV 147

Query: 220 VPEMIGQVTTLGLIPFFHIY 239
              +      +  +P  HI+
Sbjct: 148 PEFIGPTDVYISYLPLAHIF 167

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 27/80 (33%), Positives = 41/80 (51%)

Query: 62  KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPT 121
           +  TY Q+ R+   FA ALR+LG+ +G  V++ +P +AE     L     G + S     
Sbjct: 82  RTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGG 141

Query: 122 AHASELKKQVDAADAKLIVS 141
             +  L  ++D A  KLIVS
Sbjct: 142 FASHSLALRIDDATPKLIVS 161

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 11  VPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVA 70
           V +    +   + +    AV +PE  TL   V Q A    D  A  +A     ++Y ++ 
Sbjct: 434 VDILLPGEYAQLAQVNATAVEIPE-TTLSALVAQQAAKTPDAPALADA--RYQFSYREMR 490

Query: 71  RDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF 115
                 A  LR  G++ G  V V LP      +    I+ AG  +
Sbjct: 491 EQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAW 535

Length = 1296

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 51.4 bits (124), Expect = 8e-07
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 12/103 (11%)

Query: 46  AELYADKVAFV----EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEY 101
                +KVA +         +  TY ++ R+   FA  L+SLG++KG  V + +P + E 
Sbjct: 57  KAGRGNKVAIIWEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPEL 116

Query: 102 GIVALGIMAAGG----VFSGANPTAHASELKKQVDAADAKLIV 140
            I  L     G     VF+G +  A    L  +++ A +KL++
Sbjct: 117 PIAMLACARIGAIHSVVFAGFSAEA----LADRINDAKSKLLI 155

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 57  EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFS 116
           E    +  ++A++       A ALR LG++ G  V   LPNV E  I  L   + G ++S
Sbjct: 80  EDGERREISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWS 139

Query: 117 GANP 120
             +P
Sbjct: 140 SCSP 143

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 14/101 (13%)

Query: 50  ADKVAFVEAVSG-----KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIV 104
            +++A + AVS      + YT+ Q+  +    A  LRSLG+++G  V++ +P +AE    
Sbjct: 67  PEQLALI-AVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFA 125

Query: 105 ALGIMAAGG----VFSGANPTAHASELKKQVDAADAKLIVS 141
            L     G     VF G    +H+  L  ++D A   LIVS
Sbjct: 126 MLACARIGAIHSVVFGGF--ASHS--LAARIDDAKPVLIVS 162

Length = 629

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 49.6 bits (119), Expect = 4e-06
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 12/99 (12%)

Query: 50  ADKVAFV----EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
            DKVA +    E    +  TY ++ R+   FA  L+SLG++KG  V + +P + E  I  
Sbjct: 71  PDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAM 130

Query: 106 LGIMAAGG----VFSGANPTAHASELKKQVDAADAKLIV 140
           L     G     VF G +  A    L  +++ A AKL++
Sbjct: 131 LACARIGAIHSVVFGGFSAEA----LADRINDAGAKLVI 165

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 106/480 (22%), Positives = 184/480 (38%), Gaps = 103/480 (21%)

Query: 46   AELYADKVA-----FVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAE 100
              L+  +VA        +   + ++YA++ R       ALR+ G+   Q V ++    AE
Sbjct: 3723 VRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRAAGVGVDQPVALL----AE 3778

Query: 101  YGIVALGIM----AAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPI 156
             G+  LG++     AG  +   +P   A  L++ ++ +   ++V  A   E+ + L   +
Sbjct: 3779 RGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARAL---L 3835

Query: 157  IVLGEERIESAINWSELIEAADKAGNN---FSNDDDVK-------QTDLWISKGVMLTHR 206
              LG       + W E ++A + A +N   +S  D++         T L   KGVM+  R
Sbjct: 3836 DELGCANRPRLLVWEE-VQAGEVASHNPGIYSGPDNLAYVIYTSGSTGL--PKGVMVEQR 3892

Query: 207  NLVANLCSTLFSVVP-------EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN 259
             ++ N      S VP       ++I Q  +      F I  +     A L      ++ N
Sbjct: 3893 GMLNNQ----LSKVPYLALSEADVIAQTASQS----FDI-SVWQFLAAPLFGARVEIVPN 3943

Query: 260  RF--ELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPD 317
                + +  L  +    +T    VP +I  ++ +   D   L  L  R ++     + P+
Sbjct: 3944 AIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAE---DRQALDGL--RWMLPTGEAMPPE 3998

Query: 318  LLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPE 377
            L   + +++P + +  AYG             PA  S     + V F   +L        
Sbjct: 3999 LARQWLQRYPQIGLVNAYG-------------PAECS-----DDVAFFRVDLA-----ST 4035

Query: 378  TGKSLPSNTP---------------------GELCVRSQCVMQGYYNNEEETARTIDKNG 416
             G  LP  +P                     GELCV    V +GY  +   TA     + 
Sbjct: 4036 RGSYLPIGSPTDNNRLYLLDEALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHP 4095

Query: 417  W-------LHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV 469
            +         TGD+     DG +  V RI   +K +G+++   E+EA L     V +AAV
Sbjct: 4096 FGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAV 4155

Length = 4334

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 49  YADKVAFVEAVSGKAYTYAQVARDTRGFAKALRS-LGLRKGQVVIVVLPNVAEYGIVALG 107
           +AD+ AF     G   +YA++ R +  FA  L+    L  G  + V +PNV +Y I   G
Sbjct: 37  FADRPAFSNL--GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFG 94

Query: 108 IMAAGGVFSGANPTAHASELKKQVDAADAKLIV 140
            + AG +    NP   A E++ Q   + A+ +V
Sbjct: 95  ALRAGLIVVNTNPLYTAREMRHQFKDSGARALV 127

Length = 562

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 54/287 (18%), Positives = 108/287 (37%), Gaps = 21/287 (7%)

Query: 265 AFLDALITHE-VTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFE 323
             +        VT    VP ++ + V     +    S   LR V  +   L  DL   ++
Sbjct: 679 LAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQ 738

Query: 324 KKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNS----VGFILPNLEVKFINPETG 379
           +   G  +   YG TE + + +++  PA     +        +G+ + N  ++ ++    
Sbjct: 739 QLT-GAPLHNLYGPTE-AAVDVSWY-PAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARM 794

Query: 380 KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWL------HTGDIGYIDDDGDIF 433
           + +P    G+L +    + QGY    + TA     + +        TGD+    DDG + 
Sbjct: 795 RPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVE 854

Query: 434 IVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIP------AACVVM 487
            + R  + +K +G ++   E++  +   P VE A   +    +A             +V 
Sbjct: 855 YLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVS 914

Query: 488 NPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
                     +   +   +  +    VL  +D +P S +GK+ R+ L
Sbjct: 915 QSGLPLDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKAL 961

Length = 1296

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 30/172 (17%)

Query: 335 YGLTEHSCITL-TYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVR 393
           YG TE +  T  T+ D            +G  LP +E+K          P     E+ V+
Sbjct: 384 YGATETAPTTTGTHWDTERVGL------IGLPLPGVELKLA--------PVGDKYEVRVK 429

Query: 394 SQCVMQGYYNNEEETARTIDKNGWLHTGDIG-YIDDD----GDIFIVDRIKELIKYKG-- 446
              V  GY+ + E TA   D+ G+   GD   ++D D    G IF   R+ E  K     
Sbjct: 430 GPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIF-DGRVAEDFKLSTGT 488

Query: 447 -FQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEI----PAAC--VVMNPNA 491
              V     +A+    P + DA V        G +    PAAC  +  +P+A
Sbjct: 489 WVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLAWPNPAACRQLAGDPDA 540

Length = 624

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 46.7 bits (112), Expect = 2e-05
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 51  DKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA 110
           D VA V     ++ TY ++       A  LR+ G+  G +V + L    E  +  L ++ 
Sbjct: 2   DAVAVVFG--DQSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLK 59

Query: 111 AGGVFSGANPTAHASELKKQVDAADAKLIVS 141
           AG  +   +P   A  L   ++ + AKL+++
Sbjct: 60  AGAAYVPLDPAYPAERLAYMLEDSGAKLLLT 90

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 2/95 (2%)

Query: 46  AELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
           A  + D+ A V  V G   TYA++       A  L +LG R G  V V      +     
Sbjct: 1   AAKHPDRPALV--VGGDTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAI 58

Query: 106 LGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV 140
           L  + AG  +   +P+  A  + K ++AA    +V
Sbjct: 59  LACLKAGAAYVPLDPSQPAERIAKILEAAGPAALV 93

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 24/78 (30%), Positives = 40/78 (51%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH 123
           Y+YAQ+++ +   A  LR  G+R+G  V+++LPNV E     L  +  G V   A     
Sbjct: 1   YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLT 60

Query: 124 ASELKKQVDAADAKLIVS 141
            ++L+ +      K IV+
Sbjct: 61  PADLRDRFSRGKPKAIVA 78

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 12/101 (11%)

Query: 49  YADKVA--FVEAVSG--KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIV 104
             D++A  +   V+G  + YTYA++  +    A  LR LG+ KG  VI+ +P + E  I 
Sbjct: 55  RGDQIALIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIA 114

Query: 105 ALGIMAAGG----VFSGANPTAHASELKKQVDAADAKLIVS 141
            L     G     VF G        EL  ++D A  KLIV+
Sbjct: 115 MLACARIGAIHSVVFGGFASK----ELASRIDDAKPKLIVT 151

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 46.7 bits (112), Expect = 3e-05
 Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 20/103 (19%)

Query: 50  ADKVAFV-EAVSG---KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
            DKVA + E       +  TY ++ R+   FA AL+SLG++KG  V + +P + E   VA
Sbjct: 81  GDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPE-AAVA 139

Query: 106 LGIMAA----GG----VFSGANPTAHASELKKQVDAADAKLIV 140
              M A    G     VF G +  A    L  ++  A AKL++
Sbjct: 140 ---MLACARIGAVHSVVFGGFSAEA----LADRIIDAGAKLVI 175

Length = 637

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 55/239 (23%), Positives = 99/239 (41%), Gaps = 27/239 (11%)

Query: 22  IFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFA-KAL 80
           +F +         + TL + +++ A+++  K   VE       TY ++   T  F     
Sbjct: 623 MFETS------DYDRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLL--TGAFVLGRK 674

Query: 81  RSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV 140
                  G+ V V+LPN     +    + +AG V +  N +A  + +     AA  K ++
Sbjct: 675 LKKNTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVL 734

Query: 141 SYAPIYEK------VKGLGLPIIVLGEERIESAINWSELIE---AADKAGNNFSN-DDDV 190
           +     EK      ++ L   I ++  E + + I  ++ I+   A       F N D D 
Sbjct: 735 TSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGRFPLVYFCNRDPDD 794

Query: 191 KQTDLWIS------KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITG 243
               L+ S      KGV+L+HRNL+AN  + + + +            +P FH +G+TG
Sbjct: 795 PAVILFTSGSEGTPKGVVLSHRNLLAN-RAQVAARIDFSPEDK-VFNALPVFHSFGLTG 851

Length = 1140

>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 41/179 (22%)

Query: 301 KLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKN 360
           KL L+  +  A P + ++    E +F G +  + YGLTE        G        +++N
Sbjct: 209 KLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGLTE--------GFGPGAGECTERN 259

Query: 361 SVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQG-----YYNNEEETARTIDKN 415
            +     +   + ++PETG+ LP    GEL V +    +G     Y              
Sbjct: 260 GLHIWEDHFIFEIVDPETGEQLPDGERGEL-VITTLTKEGMPLIRYR------------- 305

Query: 416 GWLHTGDIGYIDDD----GDIF-----IVDRIKELIKYKGFQVAPAELEAILLTHPSVE 465
               TGDI  I  D    G        I  R  +++  +G  V P+++E +LL  P V 
Sbjct: 306 ----TGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVT 360

Length = 438

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 45.3 bits (108), Expect = 7e-05
 Identities = 62/294 (21%), Positives = 98/294 (33%), Gaps = 60/294 (20%)

Query: 282 PPIILSLVKDPIV--DEFDLSKLQLRAVMTAAAPLAPDLLSSFE----KKFPGVQVQEAY 335
              + +L K  I      DLS L  R +++  +PL P     F+         V +    
Sbjct: 336 AKYLDALEKAGIEPGRTHDLSSL--RTILSTGSPLPP---EGFDWVYSHVKSDVWLASIS 390

Query: 336 GLTE-HSCITLTYGDPANP---------SAGSKKNSVGFILPNLEVKFINPETGKSLPSN 385
           G T+   C     G+P  P           G    +               E GK +   
Sbjct: 391 GGTDICGCFVG--GNPTLPVYRGEIQCRGLGMAVEAF-------------DEEGKPVI-G 434

Query: 386 TPGEL-CVRSQCVMQGYYNNEEETARTID------KNGWLHTGDIGYIDDDGDIFIVDRI 438
             GEL C +    M  Y+ N+ + +R  D         W H GD   I   G + I  R 
Sbjct: 435 EVGELVCTKPFPSMPLYFWNDPDGSRYRDAYFDTFPGVWRH-GDWIKITPHGGVIIYGRS 493

Query: 439 KELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDI 498
              +   G ++  AE+  ++   P VED+ VV    ++  E     V +       +   
Sbjct: 494 DATLNPGGVRIGTAEIYRVVEKIPEVEDSLVVGQEVDDGDERMPLFVKLREGVTLDD--- 550

Query: 499 MDFVASNVATYKKVRVLHFV-------DGIPKSHSGKIM----RRILKDKMLEK 541
              V    +  +       V         IP + SGK +    ++IL  K +E 
Sbjct: 551 -ALVKRIRSAIRAALSPRHVPAEIIAVPDIPYTLSGKKVEVAVKKILLGKPVEN 603

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV----FSGAN 119
            +YA++   +   A  L  LG++ G  V  +LP   E  +  L     G +    F+   
Sbjct: 1   LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60

Query: 120 PTAHASELKKQVDAADAKLIVSYA 143
           P A    L      + AK++V+ A
Sbjct: 61  PKAIEYRL----GHSGAKVVVTNA 80

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 46  AELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
           A+ + D VA V+   G   TYA++ R     A  L SLG+R G +V + L       +  
Sbjct: 2   AQTHPDAVA-VDFWDGS-LTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAI 59

Query: 106 LGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAP 144
           L ++ AG  +   +P+A    L+  ++ + A ++++ +P
Sbjct: 60  LAVLKAGAAYVPIDPSAPVERLQFIIEDSGATVVLTSSP 98

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 44.8 bits (107), Expect = 1e-04
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 64  YTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAA---GGVFSGANP 120
            ++A++ R     A ALR+LG+  G  V   LPN+ E  +VA+  +A    G ++S  +P
Sbjct: 115 LSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPE-TVVAM--LATASLGAIWSSCSP 171

Length = 655

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 47/177 (26%), Positives = 64/177 (36%), Gaps = 42/177 (23%)

Query: 65  TYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHA 124
           TY Q     R  AKA   LGL +   V ++  N  E+ I A+G + AGG+  G   T   
Sbjct: 10  TYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTNSP 69

Query: 125 SELKKQVDAADAK---LIVSYAPIYEKVKGL--GLP----IIVLGEERIESAIN---WSE 172
                Q  A  ++   L+V  A   +K+  +   LP    II   E   E   N   W E
Sbjct: 70  EAC--QYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNLYSWKE 127

Query: 173 LIEAADKAGNNFSNDDDVKQTDLWIS--------------------KGVMLTHRNLV 209
            +E               +Q D  I                     KGVML+H N+ 
Sbjct: 128 FMELGR--------SIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNIT 176

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 51  DKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA 110
           D +A +     + ++Y ++ + +   A +LR  G++ G   +V L NVAE+ I    ++ 
Sbjct: 38  DAIAVICG--ERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLK 95

Query: 111 AG 112
            G
Sbjct: 96  LG 97

Length = 536

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 45  DAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIV 104
            A LY D+            T+A++ R     A ALR+LG+R G  V   LPN+ +  + 
Sbjct: 101 PALLYVDE----THEPAPV-TWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVA 155

Query: 105 ALGIMAAGGVFSGANP 120
            L   + G ++S  +P
Sbjct: 156 MLATASVGAIWSSCSP 171

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 9/123 (7%)

Query: 64  YTYAQVARDTRGFAKAL-RSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTA 122
           +++ ++   +R  A  L  + GL++G  V V+LP V E+ +V +  +  G VF       
Sbjct: 42  WSFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQL 101

Query: 123 HASELKKQVDAADAKLIV---SYAP----IYEKVKGLGLPIIVLGEERIESAINWSELIE 175
            A ++  ++ A+ AK IV     AP    I  +   L   ++V  E   +  +N+ EL++
Sbjct: 102 TAKDILYRLQASKAKCIVTSDELAPAVDSIASECPSLKTKLLV-SEHSRDGWLNFKELLK 160

Query: 176 AAD 178
            A 
Sbjct: 161 EAS 163

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 50  ADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIM 109
            D +A  +    +  +YA++   +   A  LR+LG+  G  V V+L   A+     L I+
Sbjct: 1   PDAIALRDD--DRTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAIL 58

Query: 110 AAGGVFSGANPTAHASELKKQVDAADAKLIVS 141
            AG  +   +P+  A  L+  ++ A+  L+++
Sbjct: 59  KAGAAYVPLDPSYPAERLQYMLEDAEPALLLT 90

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 58/261 (22%), Positives = 100/261 (38%), Gaps = 30/261 (11%)

Query: 298 DLSKLQLRAVMTAAAPLAPDLLSSFEKKF-PGVQVQEAYGLTE-HSCITLTYGDPANPSA 355
           DLS LQ   V +  +PL PD       +    V +    G T+  SC        ANP+ 
Sbjct: 382 DLSALQC--VASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAG-----ANPTL 434

Query: 356 GSKKNSVGFILPNL--EVKFINPETGKSLPSNTPGEL-CVRSQCVMQGYYNNEEETARTI 412
                 +    P L   V+  +PE GK + +   GEL C      M   + N+ + ++  
Sbjct: 435 PVHIGEIQ--APGLGTAVQSWDPE-GKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYR 490

Query: 413 DK------NGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVED 466
           D         W H GD   +   G I I  R    +  +G ++  AE+   +     V +
Sbjct: 491 DAYFDTYPGVWRH-GDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRE 549

Query: 467 AAVVSLPDEEAGEIPAACVVMNPNAKESE---DDIMDFVASNVATYKKVRVLHFVDGIPK 523
           +  +     + G      V + P A   +   D I   + + ++       +  V GIP 
Sbjct: 550 SLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPH 609

Query: 524 SHSGKIM----RRILKDKMLE 540
           + +GK +    +R+L+   ++
Sbjct: 610 TLTGKRVEVAVKRVLQGTPVD 630

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 22  IFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSG----KAYTYAQVARDTRGFA 77
           + +SRHP  P P +  +P  + + A    D+    +   G    +  TY +  R     A
Sbjct: 37  VIKSRHPLGPYPRS--IPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALA 94

Query: 78  KALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG 112
           +AL  LGL  G+ V+++  N  E+ ++ L  M AG
Sbjct: 95  QALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAG 129

Length = 624

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	544
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK05691	4334	peptide synthase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
KOG3628	1363	consensus Predicted AMP-binding protein [General f	100.0
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	100.0
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.97
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.96
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.91
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.88
PRK09188	365	serine/threonine protein kinase; Provisional	99.87
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.69
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	99.3
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.9
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.03
PLN02249	597	indole-3-acetic acid-amido synthetase	97.85
PLN02620	612	indole-3-acetic acid-amido synthetase	97.77
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	97.74
PLN02247	606	indole-3-acetic acid-amido synthetase	97.18
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	94.72
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	86.19
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	86.15

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-81  Score=621.25  Aligned_cols=489  Identities=39%  Similarity=0.636  Sum_probs=429.4

Q ss_pred             hhhhhcCCc-eEEEEccC-CceeeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCC
Q 039837           44 QDAELYADK-VAFVEAVS-GKAYTYAQVARDTRGFAKALRSLG--LRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGAN  119 (544)
Q Consensus        44 ~~a~~~p~~-~a~~~~~~-~~~~Ty~el~~~~~~la~~L~~~G--i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~  119 (544)
                      +.+..++++ +.+++... ++.+||+|++.++.|+|..|.+.|  +++||+|+++++|+++++.+++||..+|++..+++
T Consensus        24 ~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~N  103 (537)
T KOG1176|consen   24 RPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLN  103 (537)
T ss_pred             ccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccC
Confidence            344344444 77766532 589999999999999999999875  88999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC----CcEEEecccc----cc---cccC-HHHHHHhhhhc-----CC
Q 039837          120 PTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG----LPIIVLGEER----IE---SAIN-WSELIEAADKA-----GN  182 (544)
Q Consensus       120 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~----~~~~~~~~~~----~~---~~~~-~~~~~~~~~~~-----~~  182 (544)
                      |.+++.++.+.++.++++++|++.+....+.+..    ..++.+....    ..   .... +..+.......     ..
T Consensus       104 p~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (537)
T KOG1176|consen  104 PRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLPDGIRPVSE  183 (537)
T ss_pred             cccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCCcccccCCC
Confidence            9999999999999999999999999888875543    4444443220    00   1111 22222221111     11


Q ss_pred             CCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccC
Q 039837          183 NFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFE  262 (544)
Q Consensus       183 ~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~  262 (544)
                      .......++|||||.||||++||+++..+.......+  .+...++.++.+|++|.+|+...+...+..|+++++...++
T Consensus       184 dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~--~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~  261 (537)
T KOG1176|consen  184 DDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW--ELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFD  261 (537)
T ss_pred             CCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc--cCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCC
Confidence            3444678999999999999999999999877766655  66779999999999999999888777888888998888899


Q ss_pred             HHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccc
Q 039837          263 LRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSC  342 (544)
Q Consensus       263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~  342 (544)
                      +..+++.+++|++|+++++|..+..|++.+.....++++++.  +.+||+++++++.+++.+.+|+..+.+.||+||+++
T Consensus       262 ~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~--v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~  339 (537)
T KOG1176|consen  262 AELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRS--VLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGG  339 (537)
T ss_pred             HHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEE--EEecCCCCCHHHHHHHHHhCCCceEEEeeccccccC
Confidence            999999999999999999999999999998777889999888  999999999999999999997799999999999997


Q ss_pred             cccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCc
Q 039837          343 ITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGD  422 (544)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD  422 (544)
                      .++.+...    .....+++|+++++++.++.+ ++|..+++++.||||++|+.++.|||+||+.|++.|+.+|||+|||
T Consensus       340 ~~~~~~~~----~e~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGD  414 (537)
T KOG1176|consen  340 LITSNDWG----PERKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGD  414 (537)
T ss_pred             ceeecCCC----ccCcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCc
Confidence            77765421    114789999999999988888 8999999999999999999999999999999999998889999999


Q ss_pred             eEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH
Q 039837          423 IGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV  502 (544)
Q Consensus       423 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l  502 (544)
                      +|++|+||++|+.+|++|+||.+|++|+|.|||++|.+||.|.|++|++++++..|+.++|+|+.+++...+++++.+++
T Consensus       415 iGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v  494 (537)
T KOG1176|consen  415 LGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYV  494 (537)
T ss_pred             eEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          503 ASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       503 ~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ++++++|++|..++|+++||+|++|||+|+.|++++.+.
T Consensus       495 ~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~  533 (537)
T KOG1176|consen  495 RKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKL  533 (537)
T ss_pred             HhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999764

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=9.5e-80  Score=565.27  Aligned_cols=503  Identities=27%  Similarity=0.393  Sum_probs=442.5

Q ss_pred             CCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           34 ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        34 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      .+.|+++.++..+++.||+.|.++..++-++||+|+.+.++.+|.+|.+.|+++||||++..||+.+|+..+|||.++|.
T Consensus        48 ~~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~  127 (596)
T KOG1177|consen   48 DSETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGL  127 (596)
T ss_pred             ccccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhce
Confidence            46699999999999999999999887788899999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHH-----hhcC---------C---------CcEEEecc--ccccccc
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEK-----VKGL---------G---------LPIIVLGE--ERIESAI  168 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~-----~~~~---------~---------~~~~~~~~--~~~~~~~  168 (544)
                      +.+++||++...+++..+++.+++++|..+.+...     +.+.         +         +..+++.+  ....+..
T Consensus       128 v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~~Ga~  207 (596)
T KOG1177|consen  128 VLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPLPGAF  207 (596)
T ss_pred             EEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcCCCce
Confidence            99999999999999999999999999987653221     1111         0         22233322  2222333


Q ss_pred             CHHHHHHh------------hhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchh
Q 039837          169 NWSELIEA------------ADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFF  236 (544)
Q Consensus       169 ~~~~~~~~------------~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~  236 (544)
                      .+++++..            .....+.....+.|||||||.|||+.+||-+++++........  ++...++++...|++
T Consensus       208 ~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~--g~~e~~~i~~~~Pl~  285 (596)
T KOG1177|consen  208 LLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARA--GYNEKHRICIPNPLY  285 (596)
T ss_pred             ehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHh--CcCcceEEEecCchH
Confidence            33333221            1112233444678999999999999999999999999888888  788888999999999


Q ss_pred             HHHHHHHHHHhhHhccceEEEc-CccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCC
Q 039837          237 HIYGITGICCATLRNKGKVVMM-NRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLA  315 (544)
Q Consensus       237 ~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~  315 (544)
                      |.+|....+++++..|++++++ +.+++...++.|.++++|.++++|+++..|++.+.....++++++-  .+.||+++|
T Consensus       286 H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~--~vigGa~~s  363 (596)
T KOG1177|consen  286 HCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRK--GVIGGAPVS  363 (596)
T ss_pred             HHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhh--heeCCCCCC
Confidence            9999889999999999999996 4689999999999999999999999999999999988999999877  999999999


Q ss_pred             HhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecc
Q 039837          316 PDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQ  395 (544)
Q Consensus       316 ~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~  395 (544)
                      +++++.+.....=..+...||+||++...+.....+.  ......++|+.+++.+..++| +.|..++.|..|||+++|.
T Consensus       364 ~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~--~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~~Gel~iRGY  440 (596)
T KOG1177|consen  364 PELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDP--PEERIKSVGHLMDHYEAAIVD-KDGSEVPLGTKGELLIRGY  440 (596)
T ss_pred             HHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCC--HHHHHhhhhhccccccccccc-CCCCccccCCCceEEEEec
Confidence            9999999987632347788999999977665432222  455667899999999999999 8999999999999999999


Q ss_pred             cccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCC
Q 039837          396 CVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDE  475 (544)
Q Consensus       396 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~  475 (544)
                      +.+.|||++++.|.+....+.||+|||++.+|++|.+++.||++|+|+.+|++|+|.+||+.|-+||.|.++.|++++++
T Consensus       441 ~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~  520 (596)
T KOG1177|consen  441 STMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDE  520 (596)
T ss_pred             hhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEEeCCCCC--CCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhhh
Q 039837          476 EAGEIPAACVVMNPNAK--ESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR  543 (544)
Q Consensus       476 ~~~~~~~~~v~~~~~~~--~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~~  543 (544)
                      ..|+.++|++.+.++..  .+.++|+.+|+.++.+|++|+.|+++++||+|.+|||+|-++|++++.+++
T Consensus       521 R~GE~VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFeir~~~k~~l~  590 (596)
T KOG1177|consen  521 RLGEEVCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFEIREMSKGHLG  590 (596)
T ss_pred             cccceEEEEEEeeccccccccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhHHHHHHHHhhcc
Confidence            99999999999988765  488999999999999999999999999999999999999999999998764

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.1e-75  Score=602.06  Aligned_cols=503  Identities=34%  Similarity=0.539  Sum_probs=430.8

Q ss_pred             CCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHh
Q 039837           32 VPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAA  111 (544)
Q Consensus        32 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~  111 (544)
                      .....++.+.+.++|+.+|+++|+.+.....++||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++
T Consensus         7 ~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~   86 (534)
T COG0318           7 MTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRA   86 (534)
T ss_pred             ccccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence            34567999999999999999999998732234999999999999999999999999999999999999999999999999


Q ss_pred             cCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC----CcEEEecccccccc--cCHHHHHHhhhhc-----
Q 039837          112 GGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG----LPIIVLGEERIESA--INWSELIEAADKA-----  180 (544)
Q Consensus       112 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----  180 (544)
                      |++++|+++.++..++.++++.+++++++++.+..+.+....    ..............  ..++.........     
T Consensus        87 Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (534)
T COG0318          87 GAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGPDADAR  166 (534)
T ss_pred             CEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHHHhhccCCcccccC
Confidence            999999999999999999999999999999977433333221    11111111111111  2344443221111     


Q ss_pred             --CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEc
Q 039837          181 --GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM  258 (544)
Q Consensus       181 --~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~  258 (544)
                        .....+...+||||||.||||++||+++..+.......+...+...|++++++|++|.+|+...++.+++.|+++++.
T Consensus       167 ~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~  246 (534)
T COG0318         167 PVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLL  246 (534)
T ss_pred             CCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeC
Confidence              123345678899999999999999999999988887777211789999999999999999988888889999999998


Q ss_pred             C--ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccc-cccccEEEecCCCCHhHHHHHHhhcCCCeEEecc
Q 039837          259 N--RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSK-LQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAY  335 (544)
Q Consensus       259 ~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~-l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  335 (544)
                      +  .+++..++..+.++++|++..+|+++..|+++.......+.+ +|.  ++.||++++++++++|.+.|+...+++.|
T Consensus       247 ~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~--~~~gg~~~~~~~~~~~~~~~~~~~i~~~Y  324 (534)
T COG0318         247 SPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRL--VLSGGAPLPPELLERFEERFGPIAILEGY  324 (534)
T ss_pred             CCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEE--EEecCCcCCHHHHHHHHHHhCCCceEEee
Confidence            8  589999999999999999999999999999988776666665 555  99999999999999999999656899999


Q ss_pred             cCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCC
Q 039837          336 GLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKN  415 (544)
Q Consensus       336 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~  415 (544)
                      |+||+++.++...... .  ....++.|.|+|+++++|+|++++..++ |++|||+++||+++.|||++|+.|...|+.+
T Consensus       325 G~TE~~~~~~~~~~~~-~--~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~  400 (534)
T COG0318         325 GLTETSPVVTINPPDD-L--LAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDED  400 (534)
T ss_pred             cccccCceeecCCCch-h--hhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccC
Confidence            9999997776654211 0  2356677999999999999976665666 9999999999999999999999999988667


Q ss_pred             CeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCC--CCC
Q 039837          416 GWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN--AKE  493 (544)
Q Consensus       416 ~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~  493 (544)
                      |||+|||+|++|++|++++.||.+|+|+.+|++|+|.+||.++.+||.|.+++|++++++..|+.++|++++.++  ...
T Consensus       401 gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~  480 (534)
T COG0318         401 GWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAEL  480 (534)
T ss_pred             CeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999876  345


Q ss_pred             CHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          494 SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       494 ~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      +.+++.++++++++.+++|..+++++++|+|++||++|+.|++.+..
T Consensus       481 ~~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         481 TAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA  527 (534)
T ss_pred             CHHHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence            88999999999999999999999999999999999999999999875

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=9.9e-74  Score=562.30  Aligned_cols=485  Identities=26%  Similarity=0.384  Sum_probs=411.2

Q ss_pred             CCHHHH-HHhhhhh-cCCceEEEEccCC---ceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCccHHHHHHHHH
Q 039837           36 VTLPDF-VLQDAEL-YADKVAFVEAVSG---KAYTYAQVARDTRGFAKALRS-LGLRKGQVVIVVLPNVAEYGIVALGIM  109 (544)
Q Consensus        36 ~~l~~~-l~~~a~~-~p~~~a~~~~~~~---~~~Ty~el~~~~~~la~~L~~-~Gi~~gd~V~i~~~n~~~~~~~~lA~~  109 (544)
                      .|+... ++++.+. .+|++|+++..+.   +++||+||++.+.++|+.|++ .|+ +||||++++|+.+++++++|||+
T Consensus         8 lN~~~n~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~   86 (528)
T COG0365           8 LNLALNALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATA   86 (528)
T ss_pred             eechhhhhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHH
Confidence            344333 4555543 4789999875322   789999999999999999987 578 99999999999999999999999


Q ss_pred             HhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCC---------cEEEecccccccccCHHHHHHhhhh-
Q 039837          110 AAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGL---------PIIVLGEERIESAINWSELIEAADK-  179 (544)
Q Consensus       110 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-  179 (544)
                      ++|++.+|+.+.++++.++.++++++++++|+.+...........         .++++....    ..|.+....... 
T Consensus        87 riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~----~~~~~~~~~~~~~  162 (528)
T COG0365          87 RIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG----LWYDEAVEKASEK  162 (528)
T ss_pred             HcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc----ccHHHHhhccCCC
Confidence            999999999999999999999999999999998876654443221         122222111    555555544221 


Q ss_pred             -----cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhcc-ccCCcccCccEEEEecchhHHHHHHHHHHhhHhccc
Q 039837          180 -----AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLF-SVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKG  253 (544)
Q Consensus       180 -----~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~  253 (544)
                           .....+....+||||||.||||+++|..++........ .+  .+.++|++++..+..|++|....++.+|..|+
T Consensus       163 ~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~--~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Ga  240 (528)
T COG0365         163 FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHG--DLLPGDRFWNSSDPGWIYGLWYSVFSPLASGA  240 (528)
T ss_pred             CCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhh--CCCCCCEEEeCCCchhhhCchHHHHHHHhcCC
Confidence                 12233456789999999999999999977766655443 34  56699999999999999999999999999999


Q ss_pred             eEEEcCc--c-CHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCe
Q 039837          254 KVVMMNR--F-ELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQ  330 (544)
Q Consensus       254 ~~~~~~~--~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~  330 (544)
                      ++++.+.  + ++..+++.|+++++|.+++.|+.++.|.+......++++++|.  +.++||++++++++++.+.+ +++
T Consensus       241 t~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~--~~SaGEPLnpe~~~w~~~~~-g~~  317 (528)
T COG0365         241 TTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRV--LGSAGEPLNPEAFEWFYSAL-GVW  317 (528)
T ss_pred             eEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhhee--eeccCCCCCHHHHHHHHHHh-CCC
Confidence            9998863  2 4899999999999999999999999999987666788999888  99999999999999999999 899


Q ss_pred             EEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecc--cccccccCChhhh
Q 039837          331 VQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQ--CVMQGYYNNEEET  408 (544)
Q Consensus       331 i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~--~~~~gy~~~~~~~  408 (544)
                      |.+.||+||+|.+.....    +  ....++.|.|+||+++.++|++ |++++.|+ |+|+++.+  +.+++||++|+.+
T Consensus       318 i~d~~gqTEtg~~~~~~~----~--~~~~g~~g~p~pG~~~~vvdd~-g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~  389 (528)
T COG0365         318 ILDIYGQTETGMGFIAGR----P--PVKNGSSGLPLPGYAVRRVDDE-GNPVPPGV-GELVVRLPWPGMALTYWNDPERY  389 (528)
T ss_pred             EeccccccccCccccCCC----C--CcCCCCCCCCCCCceeEEECCC-CCcCCCCc-eEEEEeCCCchhhhhhhCCHHHH
Confidence            999999999995554432    1  3345566999999999999954 99999999 99999986  8899999999999


Q ss_pred             hcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeC
Q 039837          409 ARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMN  488 (544)
Q Consensus       409 ~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  488 (544)
                      .+.+.+. ||.|||.+++|+||++++.||.||+||++|+++.+.|||++|.+||.|.|++|++++++..|+.+.+||+++
T Consensus       390 ~~~y~~~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~  468 (528)
T COG0365         390 KEAYFGR-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLA  468 (528)
T ss_pred             HHHHhhc-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEec
Confidence            8887444 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC--HHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          489 PNAKES--EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       489 ~~~~~~--~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      ++...+  .++|++++++.+.++..|..++++++||+|.||||.|+.||+.+.
T Consensus       469 ~g~~~~~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~  521 (528)
T COG0365         469 AGVEPNELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILH  521 (528)
T ss_pred             CCCChHHHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHh
Confidence            876544  356666777777789999999999999999999999999999876

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=3.8e-72  Score=582.28  Aligned_cols=524  Identities=81%  Similarity=1.233  Sum_probs=448.2

Q ss_pred             CcceeeecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Q 039837           18 DEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPN   97 (544)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n   97 (544)
                      +.+.++.+..+..+.+...|+.+.|.++|+.+|+++|+.+...++.+||+||.+++.++|+.|.+.|+++||+|+++++|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~   89 (546)
T PLN02330         10 DNEHIFRSRYPSVPVPDKLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPN   89 (546)
T ss_pred             ccceeeccCCCCCCCCCCCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence            34456677777777777889999999999999999999875446799999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhh
Q 039837           98 VAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAA  177 (544)
Q Consensus        98 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (544)
                      +.+++++++||+++|++++|+++..+.+++.++++.++++++++++.....+.......+.++.........+.++....
T Consensus        90 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  169 (546)
T PLN02330         90 VAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEKIEGAVNWKELLEAA  169 (546)
T ss_pred             chHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcCCcEEEecCCCCCCcccHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999888777766666666543333445566555432


Q ss_pred             hhc---------CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhh
Q 039837          178 DKA---------GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCAT  248 (544)
Q Consensus       178 ~~~---------~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~  248 (544)
                      ...         .........+||||||.||||.+||+++...+..............+..+.++|++|.+++...++.+
T Consensus       170 ~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~  249 (546)
T PLN02330        170 DRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCAT  249 (546)
T ss_pred             cccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHH
Confidence            111         01122345789999999999999999998776543322222233456889999999999987788899


Q ss_pred             HhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCC
Q 039837          249 LRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPG  328 (544)
Q Consensus       249 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~  328 (544)
                      +..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++.++++|.+++||++++++++++|.+.|++
T Consensus       250 l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~  329 (546)
T PLN02330        250 LRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPG  329 (546)
T ss_pred             hhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999876555555655556669999999999999999999989


Q ss_pred             CeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhh
Q 039837          329 VQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEET  408 (544)
Q Consensus       329 ~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~  408 (544)
                      +++++.||+||++.+.................++|.|+++++++++|++++.+++.|+.|||+++|+.++.||++++..+
T Consensus       330 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~  409 (546)
T PLN02330        330 VQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEET  409 (546)
T ss_pred             CeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccch
Confidence            99999999999986544322111110123446899999999999999878999999999999999999999999999999


Q ss_pred             hcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeC
Q 039837          409 ARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMN  488 (544)
Q Consensus       409 ~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  488 (544)
                      ...++.+|||+|||+|++++||.+++.||.+|+|+++|++|+|.+||++|.+++.|.+++|++++++..++.++++++..
T Consensus       410 ~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~  489 (546)
T PLN02330        410 DRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVIN  489 (546)
T ss_pred             hhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEEC
Confidence            88888899999999999999999999999999999999999999999999999999999999999888888999999988


Q ss_pred             CCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          489 PNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       489 ~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ++...+.+++.++++++|+.++.|..+++++++|+|.+||++|++|++++...
T Consensus       490 ~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~  542 (546)
T PLN02330        490 PKAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSI  542 (546)
T ss_pred             CCCCCCHHHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence            76667788999999999999999999999999999999999999999998654

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=4.3e-71  Score=575.40  Aligned_cols=517  Identities=36%  Similarity=0.584  Sum_probs=429.8

Q ss_pred             ceeeecCCCCCCCCC--CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcC
Q 039837           20 EHIFRSRHPAVPVPE--NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRS-LGLRKGQVVIVVLP   96 (544)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gi~~gd~V~i~~~   96 (544)
                      ..++.+..++.+.+.  ..++.+.+... +.+|+++|+++...+.++||+||.++++++|++|++ .|+++||+|+++++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~  100 (560)
T PLN02574         22 TGIYSSKHPPVPLPSDPNLDAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLP  100 (560)
T ss_pred             CeeecCCCCCCCCCCCCCCCHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECC
Confidence            344554433333332  34555555554 679999999986545689999999999999999998 99999999999999


Q ss_pred             CCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccc-----cccccCHH
Q 039837           97 NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEER-----IESAINWS  171 (544)
Q Consensus        97 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  171 (544)
                      |++++++++|||+++|++++|++|.++.+++.++++.+++++++++.+....+......++.++...     ......+.
T Consensus       101 n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (560)
T PLN02574        101 NSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPKFY  180 (560)
T ss_pred             CcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCcEEecCcccccccCccCcccHH
Confidence            9999999999999999999999999999999999999999999999887776665554544432110     01112333


Q ss_pred             HHHHhhhh------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccC---CcccCccEEEEecchhHHHHHH
Q 039837          172 ELIEAADK------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV---PEMIGQVTTLGLIPFFHIYGIT  242 (544)
Q Consensus       172 ~~~~~~~~------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~  242 (544)
                      .+......      ..........+||||||.||||++||+++.+.+........   ......++++..+|++|.+|+.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~  260 (560)
T PLN02574        181 ELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLS  260 (560)
T ss_pred             HHhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHH
Confidence            33322111      11122335689999999999999999999887765542110   0123567889999999999987


Q ss_pred             HHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCC-CccCccccccccEEEecCCCCHhHHHH
Q 039837          243 GICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIV-DEFDLSKLQLRAVMTAAAPLAPDLLSS  321 (544)
Q Consensus       243 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~~~~l~~~~v~~~G~~~~~~~~~~  321 (544)
                      ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.... ...++++++.  +++||++++++++++
T Consensus       261 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~--~~~gg~~l~~~~~~~  338 (560)
T PLN02574        261 LFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQ--VSCGAAPLSGKFIQD  338 (560)
T ss_pred             HHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceE--EEEecccCCHHHHHH
Confidence            7788888999999999889999999999999999999999999999886542 3445677666  999999999999999


Q ss_pred             HHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccc
Q 039837          322 FEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGY  401 (544)
Q Consensus       322 ~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy  401 (544)
                      +.+.++++.+++.||+||++.+.+....   .......+++|.|+++++++|+|++++.+++.|+.|||+|+|+.++.||
T Consensus       339 ~~~~~~~~~v~~~YG~tE~~~~~~~~~~---~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY  415 (560)
T PLN02574        339 FVQTLPHVDFIQGYGMTESTAVGTRGFN---TEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGY  415 (560)
T ss_pred             HHHHCCCCcEEecccccccCceeecCCC---ccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhh
Confidence            9999988999999999999865442211   1122456789999999999999988899999999999999999999999


Q ss_pred             cCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCcee
Q 039837          402 YNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIP  481 (544)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~  481 (544)
                      +++++.+...|+.+|||+|||+|+++++|++++.||.+|+||++|++|++.+||++|.+||+|.+++|++++++..++.+
T Consensus       416 ~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~  495 (560)
T PLN02574        416 LNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIP  495 (560)
T ss_pred             cCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcce
Confidence            99999999888889999999999999999999999999999999999999999999999999999999999988888889


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837          482 AACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM  542 (544)
Q Consensus       482 ~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~  542 (544)
                      +++++..++...+.+++.++++++|+.++.|..++++++||+|++||++|+.|++++.+..
T Consensus       496 ~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~~  556 (560)
T PLN02574        496 VAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNSV  556 (560)
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhcc
Confidence            9999988777777899999999999999999999999999999999999999999987643

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=3.7e-71  Score=574.05  Aligned_cols=514  Identities=41%  Similarity=0.720  Sum_probs=436.8

Q ss_pred             eecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHH
Q 039837           23 FRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYG  102 (544)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~  102 (544)
                      +.+..+..+.+...|+.+.+.++++.+|+++|+++...++++||+||.++++++|++|.+.|+++||+|+++++|+.+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~   89 (537)
T PLN02246         10 FRSKLPDIYIPNHLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFV   89 (537)
T ss_pred             ecCCCCCCCCCCCCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHH
Confidence            44445555667788999999999999999999998655678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC----CCcEEEecccccccccCHHHHHHhhh
Q 039837          103 IVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----GLPIIVLGEERIESAINWSELIEAAD  178 (544)
Q Consensus       103 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (544)
                      ++++||+++|++++|+++.++.+++..+++.+++++++++......+...    ....+.++... .....+........
T Consensus        90 ~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~  168 (537)
T PLN02246         90 LAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPP-EGCLHFSELTQADE  168 (537)
T ss_pred             HHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCCC-CCceeHHHHhcCCC
Confidence            99999999999999999999999999999999999999988766554332    23344443211 12223333322111


Q ss_pred             h------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhcccc--CCcccCccEEEEecchhHHHHHHHHHHhhHh
Q 039837          179 K------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSV--VPEMIGQVTTLGLIPFFHIYGITGICCATLR  250 (544)
Q Consensus       179 ~------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~  250 (544)
                      .      ..........+||||||.||||++||+++...........  ...+..+++++..+|++|.+++...++.++.
T Consensus       169 ~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~  248 (537)
T PLN02246        169 NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLR  248 (537)
T ss_pred             CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHh
Confidence            0      0112223457899999999999999999988776543311  1167889999999999999998777888999


Q ss_pred             ccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCe
Q 039837          251 NKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQ  330 (544)
Q Consensus       251 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~  330 (544)
                      .|+++++.+..++..+++.++++++|++.++|+++..|.+........+++++.  +++||+++++++.+.+.+.|+++.
T Consensus       249 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~--~~~gg~~l~~~~~~~~~~~~~~~~  326 (537)
T PLN02246        249 VGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRM--VLSGAAPLGKELEDAFRAKLPNAV  326 (537)
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeE--EEEecCcCCHHHHHHHHHHcCCCe
Confidence            999999999889999999999999999999999999998876555556677776  999999999999999999998899


Q ss_pred             EEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhc
Q 039837          331 VQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETAR  410 (544)
Q Consensus       331 i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~  410 (544)
                      +++.||+||++.+++..............+++|+|+++++++++|++++.+++.|+.|||+++|+.++.||+++++.+..
T Consensus       327 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~  406 (537)
T PLN02246        327 LGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATAN  406 (537)
T ss_pred             EeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhh
Confidence            99999999998765432211111122345689999999999999977899999999999999999999999999999998


Q ss_pred             ccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCC
Q 039837          411 TIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN  490 (544)
Q Consensus       411 ~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  490 (544)
                      .++.++||+|||+|+++++|++++.||.+|+||++|.+|+|.+||+.|.++|+|.+++|++.++...++.++++++..++
T Consensus       407 ~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  486 (537)
T PLN02246        407 TIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNG  486 (537)
T ss_pred             cccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCC
Confidence            88889999999999999999999999999999999999999999999999999999999999888888889999988877


Q ss_pred             CCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          491 AKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       491 ~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      ...+.++++++++++++.++.|..++++++||+|++||++|++|++++.
T Consensus       487 ~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~  535 (537)
T PLN02246        487 SEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLA  535 (537)
T ss_pred             CCCCHHHHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHh
Confidence            6677899999999999999999999999999999999999999999875

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-71  Score=579.21  Aligned_cols=485  Identities=26%  Similarity=0.376  Sum_probs=417.5

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF  115 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  115 (544)
                      .++.++|.+.|+.+|+++|+++.  ++++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~--~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~  126 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDE--RGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARI  126 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEEC--CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEE
Confidence            48999999999999999999986  6799999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-----CcEEEecccc----cccccCHHHHHHhhhhc----CC
Q 039837          116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----LPIIVLGEER----IESAINWSELIEAADKA----GN  182 (544)
Q Consensus       116 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~  182 (544)
                      +|+++.++.+++.++++.+++++++++++....+....     +..+......    ......++++.......    ..
T Consensus       127 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (549)
T PRK07788        127 ILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSSTAPLPKPP  206 (549)
T ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcCCCCCCCCCCC
Confidence            99999999999999999999999999988766654321     1222211111    12233455544321111    11


Q ss_pred             CCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccC
Q 039837          183 NFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFE  262 (544)
Q Consensus       183 ~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~  262 (544)
                      .......+||||||.||||.+||+++.+.+......+  .+..+++++...|++|.+|+ ..++.++..|+++++...++
T Consensus       207 ~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~  283 (549)
T PRK07788        207 KPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV--PFRAGETTLLPAPMFHATGW-AHLTLAMALGSTVVLRRRFD  283 (549)
T ss_pred             CCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC--CCCcCCeEEEccchHHHHHH-HHHHHHHHhCCEEEECCCCC
Confidence            2233567899999999999999999998877776666  67788999999999999998 45677899999999988889


Q ss_pred             HHHHHHHHHHcCceeeecchHHHHHHhcCCCC--CccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccc
Q 039837          263 LRAFLDALITHEVTFAPIVPPIILSLVKDPIV--DEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEH  340 (544)
Q Consensus       263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~  340 (544)
                      +..+++.++++++|++.++|+++..|++....  ...++++++.  +++||+++++++.++|.+.| +..+++.||+||+
T Consensus       284 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~--i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~  360 (549)
T PRK07788        284 PEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKI--IFVSGSALSPELATRALEAF-GPVLYNLYGSTEV  360 (549)
T ss_pred             HHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeE--EEEeCCCCCHHHHHHHHHHh-CccceeccCcchh
Confidence            99999999999999999999999999886553  4445677777  99999999999999999998 7889999999999


Q ss_pred             cccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeec
Q 039837          341 SCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHT  420 (544)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~T  420 (544)
                      +.......    .......+++|+|+++++++++| +++++++.|+.|||+++|+.++.||++++..  . . .+|||+|
T Consensus       361 ~~~~~~~~----~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~--~-~-~~g~~~T  431 (549)
T PRK07788        361 AFATIATP----EDLAEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK--Q-I-IDGLLSS  431 (549)
T ss_pred             chhhccCh----hhhhhcCCCcccCCCCcEEEEEC-CCcCCCCCCCeEEEEEeCCCccccccCCCcc--c-c-cCCceec
Confidence            86554332    11223557899999999999999 6889999999999999999999999998765  1 2 4789999


Q ss_pred             CceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 039837          421 GDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMD  500 (544)
Q Consensus       421 GD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  500 (544)
                      ||+|+++++|++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++.++...+.+++.+
T Consensus       432 GDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~  511 (549)
T PRK07788        432 GDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKD  511 (549)
T ss_pred             CceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988899999999998877788899999


Q ss_pred             HHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 039837          501 FVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK  537 (544)
Q Consensus       501 ~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~  537 (544)
                      +++++|+.+++|..++++++||+|++||++|++|+++
T Consensus       512 ~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~  548 (549)
T PRK07788        512 YVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM  548 (549)
T ss_pred             HHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence            9999999999999999999999999999999999763

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=3.1e-71  Score=576.84  Aligned_cols=499  Identities=24%  Similarity=0.316  Sum_probs=411.5

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG  112 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G  112 (544)
                      ....|+.+.|.+.++++|+++|+++.  ++++||+||.+++.++|++|.+.|+++||+|+++++|+++++++++||+++|
T Consensus         4 ~~~~~~~~~~~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~G   81 (563)
T PLN02860          4 HSQAHICQCLTRLATLRGNAVVTISG--NRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAG   81 (563)
T ss_pred             hhhhHHHHHHHHHHHhcCCceEEecC--CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhcc
Confidence            34568999999999999999999875  6899999999999999999999999999999999999999999999999999


Q ss_pred             CeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC---C---CcEEE-ecccccc------cccCHHHHHHh---
Q 039837          113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL---G---LPIIV-LGEERIE------SAINWSELIEA---  176 (544)
Q Consensus       113 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~---~~~~~-~~~~~~~------~~~~~~~~~~~---  176 (544)
                      ++++|+++.++.+++.++++++++++++++++........   .   +...+ .++....      .....+.+...   
T Consensus        82 av~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (563)
T PLN02860         82 GIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALG  161 (563)
T ss_pred             EEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCccc
Confidence            9999999999999999999999999999987642222111   1   11111 1211100      00111111000   


Q ss_pred             ----hhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhcc
Q 039837          177 ----ADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNK  252 (544)
Q Consensus       177 ----~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G  252 (544)
                          ...........+.+||||||.||||++||+++..+.......+  ++..+++++..+|++|.+|+ ..++.++..|
T Consensus       162 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~--~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G  238 (563)
T PLN02860        162 TTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV--GYGEDDVYLHTAPLCHIGGL-SSALAMLMVG  238 (563)
T ss_pred             cccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc--CCCCCCEEEEecCchhhccH-HHHHHHHHcC
Confidence                0001122334567999999999999999999988766655555  67888999999999999998 4678899999


Q ss_pred             ceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCC--ccCccccccccEEEecCCCCHhHHHHHHhhcCCCe
Q 039837          253 GKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVD--EFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQ  330 (544)
Q Consensus       253 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~  330 (544)
                      +++++.+.+++..+++.++++++|++.++|+++..|++.....  ...+++++.  +++||+++++++.++|.+.|++++
T Consensus       239 ~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~--~~~gG~~l~~~~~~~~~~~~~~~~  316 (563)
T PLN02860        239 ACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRK--ILNGGGSLSSRLLPDAKKLFPNAK  316 (563)
T ss_pred             ceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeE--EEeCCCcCCHHHHHHHHHhcCCCc
Confidence            9999998899999999999999999999999999998754322  234566666  999999999999999999998899


Q ss_pred             EEecccCccccccccccCCCCC------------------CCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEE
Q 039837          331 VQEAYGLTEHSCITLTYGDPAN------------------PSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCV  392 (544)
Q Consensus       331 i~~~yG~tE~~~~~~~~~~~~~------------------~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v  392 (544)
                      +++.||+||++..+........                  ........++|+|+++++++|++++      +|+.|||++
T Consensus       317 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~~Gel~v  390 (563)
T PLN02860        317 LFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSRVGRILT  390 (563)
T ss_pred             eecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC------CCceeEEEE
Confidence            9999999999865543221110                  0001123468999999999999843      588999999


Q ss_pred             ecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEee
Q 039837          393 RSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSL  472 (544)
Q Consensus       393 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~  472 (544)
                      +|+.++.|||++++.+...+..+|||+|||+|+++++|++++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.
T Consensus       391 ~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~  470 (563)
T PLN02860        391 RGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGV  470 (563)
T ss_pred             ecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEE
Confidence            99999999999999999888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCceeEEEEEeCCCC--------------CCCHHHHHHHHHh-cccCCCceeEEEEe-ecCCCCCCcccchHHHHH
Q 039837          473 PDEEAGEIPAACVVMNPNA--------------KESEDDIMDFVAS-NVATYKKVRVLHFV-DGIPKSHSGKIMRRILKD  536 (544)
Q Consensus       473 ~~~~~~~~~~~~v~~~~~~--------------~~~~~~l~~~l~~-~l~~~~~p~~~~~~-~~~P~t~~GKi~r~~l~~  536 (544)
                      +++..++.+++++++.++.              ..+.+++.+++++ .|+.|++|..++++ ++||+|++||++|++|++
T Consensus       471 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~  550 (563)
T PLN02860        471 PDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRR  550 (563)
T ss_pred             ecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHHHHHH
Confidence            9988899999999987652              3456789999987 59999999988765 679999999999999999


Q ss_pred             HHHHhhhC
Q 039837          537 KMLEKMRK  544 (544)
Q Consensus       537 ~~~~~~~~  544 (544)
                      ++.+.+++
T Consensus       551 ~~~~~~~~  558 (563)
T PLN02860        551 EVLSHLQS  558 (563)
T ss_pred             HHHHHHhc
Confidence            99887753

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8e-73  Score=507.82  Aligned_cols=495  Identities=25%  Similarity=0.377  Sum_probs=428.2

Q ss_pred             CCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           34 ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        34 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      ...+|.+.|.++|.++||++|++++  ++.+||+||.++++++|..|++.||++||+|.+.++|..+++++++|++++|+
T Consensus        26 ~d~~l~d~L~~~A~~~pdriAv~d~--~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv  103 (542)
T COG1021          26 QDRTLTDILTDHAARYPDRIAVIDG--ERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGV  103 (542)
T ss_pred             cCCcHHHHHHHHHhhcCCceEEecC--cccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCc
Confidence            3568999999999999999999998  67899999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccch--------HHHhhc-C-CCcEEEecccccccccCHHHHHHhhhh----
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPI--------YEKVKG-L-GLPIIVLGEERIESAINWSELIEAADK----  179 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~--------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----  179 (544)
                      .+|.-=|+.-..+|..+.+..+++..|.+...        ...+.. . .++.+.+..+.......+..+......    
T Consensus       104 ~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~~~~~~a~~~~~a  183 (542)
T COG1021         104 APVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGLFTPA  183 (542)
T ss_pred             chhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhhhhhCccccCCcC
Confidence            99998888889999999999999999986542        111211 1 245555543222222222222111111    


Q ss_pred             --cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHH-HHHhhHhccceEE
Q 039837          180 --AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITG-ICCATLRNKGKVV  256 (544)
Q Consensus       180 --~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~  256 (544)
                        ......+....+.||||.||-+..||.....++..-.+..  .++.+.++++.+|..|-+.+.. ..+..+..|+++|
T Consensus       184 ~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC--~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VV  261 (542)
T COG1021         184 PPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC--GFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVV  261 (542)
T ss_pred             CCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh--CcCccceEEEecccccCCCCCCcchhheeeeccEEE
Confidence              1111223345689999999999999999988888777777  8899999999999999887643 5688999999999


Q ss_pred             EcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEeccc
Q 039837          257 MMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYG  336 (544)
Q Consensus       257 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  336 (544)
                      +.+..++.....+|+++++|+.-.+|.....|++..+....+++|+++  +-+||+.+++++.+++...+ ++.+-+.||
T Consensus       262 la~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrl--lQVGGarl~~~~Arrv~~~l-gC~LQQVFG  338 (542)
T COG1021         262 LAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRL--LQVGGARLSATLARRVPAVL-GCQLQQVFG  338 (542)
T ss_pred             ECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeE--EeecCcccCHHHHhhchhhh-CchHHHHhh
Confidence            999999999999999999999999999999999999999999999999  99999999999999999999 999999999


Q ss_pred             CccccccccccCCCCCCCCCCCCCcccccC-CCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCC
Q 039837          337 LTEHSCITLTYGDPANPSAGSKKNSVGFIL-PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKN  415 (544)
Q Consensus       337 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~  415 (544)
                      |.|.-...+..   + +.......+.|+|+ |.-+++|+| ++|+++++|++|+|.++||..++|||+.|+++.+.|+.+
T Consensus       339 MAEGLvnyTRL---D-Dp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~  413 (542)
T COG1021         339 MAEGLVNYTRL---D-DPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDAD  413 (542)
T ss_pred             hhhhhhccccc---C-CchHheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcC
Confidence            99943222221   1 22445566789888 778899999 899999999999999999999999999999999999999


Q ss_pred             CeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 039837          416 GWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE  495 (544)
Q Consensus       416 ~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  495 (544)
                      |||+|||++++++||++.+.||.+|+|+.+|++|..+|||+.|..||.|.+++++++++.-.|++.|++++.++.. .+.
T Consensus       414 GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~-~~~  492 (542)
T COG1021         414 GFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPP-LRA  492 (542)
T ss_pred             CceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCC-CCH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988754 788


Q ss_pred             HHHHHHHHhc-ccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          496 DDIMDFVASN-VATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       496 ~~l~~~l~~~-l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      .+++.++.+. +..|++|++|.+++.+|+|+-|||++++|++.+...
T Consensus       493 ~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~  539 (542)
T COG1021         493 AQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASR  539 (542)
T ss_pred             HHHHHHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhhh
Confidence            9999999876 899999999999999999999999999999988654

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.4e-70  Score=565.76  Aligned_cols=488  Identities=19%  Similarity=0.255  Sum_probs=401.9

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      ..++.+.|.+.++++|+++|+.+.. .+++||+||.++++++|+.|.+   .+||+|+++++|+++++++++||+++|++
T Consensus        18 ~~~~~~~~~~~~~~~p~~~a~~~~~-~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~v   93 (539)
T PRK06334         18 GKTVLESFLKLCSEMTTATVCWDEQ-LGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSGKI   93 (539)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeCC-CCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcCCe
Confidence            4689999999999999999998752 3689999999999999999987   38999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-------CcEEEecccccccccCHHHHHHh-----------
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-------LPIIVLGEERIESAINWSELIEA-----------  176 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-----------  176 (544)
                      ++|+++.++.+++.++++.+++++++++.+....+.+..       ..++.+++..  ....+......           
T Consensus        94 ~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  171 (539)
T PRK06334         94 PVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVR--KELSFWEKCRIGIYMSIPFEWL  171 (539)
T ss_pred             eEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhh--hhccHHHhhhhhhhhcCCchhh
Confidence            999999999999999999999999999887666554321       1223222110  00000000000           


Q ss_pred             -----hhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhc
Q 039837          177 -----ADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRN  251 (544)
Q Consensus       177 -----~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  251 (544)
                           ...........+.+||||||.||||++||+++..........+  +...+|++++++|++|.+|+...++.++..
T Consensus       172 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~  249 (539)
T PRK06334        172 MRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF--SPKEDDVMMSFLPPFHAYGFNSCTLFPLLS  249 (539)
T ss_pred             hhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc--CCCCCceEEEecchHhhhhhHHHHHHHHHc
Confidence                 0011223334568999999999999999999998877766665  678899999999999999987777889999


Q ss_pred             cceEEEcC-ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCe
Q 039837          252 KGKVVMMN-RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQ  330 (544)
Q Consensus       252 G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~  330 (544)
                      |+++++.. .+++..+++.|+++++|++.++|+++..|++........+++++.  +++||+++++++.+++.+.|+++.
T Consensus       250 G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--i~~gG~~l~~~~~~~~~~~~~~~~  327 (539)
T PRK06334        250 GVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRF--VVIGGDAFKDSLYQEALKTFPHIQ  327 (539)
T ss_pred             CCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccE--EEECCccCCHHHHHHHHHHCCCCe
Confidence            99998875 578999999999999999999999999998866544556777777  999999999999999999998899


Q ss_pred             EEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhc
Q 039837          331 VQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETAR  410 (544)
Q Consensus       331 i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~  410 (544)
                      +++.||+||++.+++....    .......++|+|+++++++|+|++++.+++.|+.|||+|+|++++.|||++++.+..
T Consensus       328 i~~~YG~TE~~~~~~~~~~----~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~  403 (539)
T PRK06334        328 LRQGYGTTECSPVITINTV----NSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGF  403 (539)
T ss_pred             EEecccccccCceEEeccC----CCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccc
Confidence            9999999999876654321    122334679999999999999977789999999999999999999999999886543


Q ss_pred             c-cCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccc------eEEEeecCCCCCceeEE
Q 039837          411 T-IDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVED------AAVVSLPDEEAGEIPAA  483 (544)
Q Consensus       411 ~-~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~------~~v~~~~~~~~~~~~~~  483 (544)
                      . .++++||+|||+|+++++|++++.||.+|+||++|++|+|.+||++|.+||+|.+      ++|++.++..  ..+++
T Consensus       404 ~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~--~~~~~  481 (539)
T PRK06334        404 VELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK--VRLCL  481 (539)
T ss_pred             eeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCc--eEEEE
Confidence            2 2357899999999999999999999999999999999999999999999999987      6777766431  23444


Q ss_pred             EEEeCCCCCCCHHHHHHHHHhc-ccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837          484 CVVMNPNAKESEDDIMDFVASN-VATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM  542 (544)
Q Consensus       484 ~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~  542 (544)
                      +++.    ..+.+++.++++++ ++.+++|..++++++||+|++||++|++|++.....+
T Consensus       482 ~~~~----~~~~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  537 (539)
T PRK06334        482 FTTF----PTSISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALAKSLF  537 (539)
T ss_pred             EEec----cCChHHHHHHHHhcCCcccccchheeeecccccccCCcccHHHHHHHHHHhh
Confidence            4442    23567899999886 7899999999999999999999999999999866543

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=5.1e-70  Score=574.87  Aligned_cols=499  Identities=20%  Similarity=0.291  Sum_probs=408.4

Q ss_pred             CCCCHH-HHHHhhhh-hcCCceEEEEcc----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHH
Q 039837           34 ENVTLP-DFVLQDAE-LYADKVAFVEAV----SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALG  107 (544)
Q Consensus        34 ~~~~l~-~~l~~~a~-~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA  107 (544)
                      ...|+. .+|+++++ .+|+++|+++..    .++++||+||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus        85 ~~~N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA  164 (666)
T PLN02654         85 GKTNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLA  164 (666)
T ss_pred             CEeeHHHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            345664 45556665 489999998632    136899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHH---------h----hc-----CCCcE-EEeccccc----
Q 039837          108 IMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEK---------V----KG-----LGLPI-IVLGEERI----  164 (544)
Q Consensus       108 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~---------~----~~-----~~~~~-~~~~~~~~----  164 (544)
                      |+++|++++|+++.++.+++..++++++++++|+++.....         +    ..     ..... +..+....    
T Consensus       165 ~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (666)
T PLN02654        165 CARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKRE  244 (666)
T ss_pred             HHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccc
Confidence            99999999999999999999999999999999998764221         1    00     00111 11111000    


Q ss_pred             ------ccccCHHHHHHhhhh------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHH-HHhhccccCCcccCccEEEE
Q 039837          165 ------ESAINWSELIEAADK------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVAN-LCSTLFSVVPEMIGQVTTLG  231 (544)
Q Consensus       165 ------~~~~~~~~~~~~~~~------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~-~~~~~~~~~~~~~~~~~~~~  231 (544)
                            .....++++......      ........+.+||||||.||||+++|.+++.. .......+  ++.++|++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~--~~~~~d~~~~  322 (666)
T PLN02654        245 DTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF--DYKPTDVYWC  322 (666)
T ss_pred             ccccccCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc--CCCCCcEEEE
Confidence                  011123333222110      12233446789999999999999999997643 33344444  7788999999


Q ss_pred             ecchhHHHHHHHHHHhhHhccceEEEcCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCC--CCccCccccccc
Q 039837          232 LIPFFHIYGITGICCATLRNKGKVVMMNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPI--VDEFDLSKLQLR  305 (544)
Q Consensus       232 ~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~  305 (544)
                      ..|++|.+|....++.+|..|+++++.+.    .++..+++.|+++++|++.++|+++..|.+...  ....+++++|. 
T Consensus       323 ~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~-  401 (666)
T PLN02654        323 TADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRV-  401 (666)
T ss_pred             cCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeE-
Confidence            99999999987888899999999999763    478999999999999999999999999987653  23346677777 


Q ss_pred             cEEEecCCCCHhHHHHHHhhcCC--CeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCC
Q 039837          306 AVMTAAAPLAPDLLSSFEKKFPG--VQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLP  383 (544)
Q Consensus       306 ~v~~~G~~~~~~~~~~~~~~~~~--~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~  383 (544)
                       ++++|+++++++++++.+.+++  +.+.+.||+||+++..+... +.  ......+++|+|++|++++|+| ++|++++
T Consensus       402 -i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~-~~--~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~  476 (666)
T PLN02654        402 -LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-PG--AWPQKPGSATFPFFGVQPVIVD-EKGKEIE  476 (666)
T ss_pred             -EEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccC-CC--CCCCCCCccCCCCCCceEEEEC-CCCCCCC
Confidence             9999999999999999998842  78999999999987654322 10  0234567899999999999999 6788999


Q ss_pred             CCCCceEEEec--ccccccccCChhhhhcccC--CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHh
Q 039837          384 SNTPGELCVRS--QCVMQGYYNNEEETARTID--KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILL  459 (544)
Q Consensus       384 ~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~  459 (544)
                      .++.|||++++  |+++.|||++++.+...+.  .+|||+|||+|++|+||+++++||+||+||++|++|+|.+||++|.
T Consensus       477 ~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~  556 (666)
T PLN02654        477 GECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALV  556 (666)
T ss_pred             CCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHH
Confidence            88999999999  7899999999998876542  2789999999999999999999999999999999999999999999


Q ss_pred             cCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHH
Q 039837          460 THPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD  536 (544)
Q Consensus       460 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~  536 (544)
                      +||+|.+++|++++++..|+.++++|++.++...+.   ++|.++++++|+.+++|..++++++||+|.+||++|+.|++
T Consensus       557 ~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~  636 (666)
T PLN02654        557 SHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK  636 (666)
T ss_pred             hCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHH
Confidence            999999999999999988999999999988755443   37888999999999999999999999999999999999999


Q ss_pred             HHHH
Q 039837          537 KMLE  540 (544)
Q Consensus       537 ~~~~  540 (544)
                      .+..
T Consensus       637 ~~~~  640 (666)
T PLN02654        637 IASR  640 (666)
T ss_pred             HHcC
Confidence            8765

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.8e-69  Score=569.04  Aligned_cols=497  Identities=28%  Similarity=0.440  Sum_probs=414.3

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEc------cCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHH
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEA------VSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVAL  106 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~------~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~l  106 (544)
                      ..+.|+.++|.+.|+.+|+++|+++.      ..++++||+||.+++.++|++|++.|+++||+|+++++|++++++++|
T Consensus        22 ~~~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l  101 (632)
T PRK07529         22 DLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW  101 (632)
T ss_pred             cCCCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            44568999999999999999999863      124789999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccch-----HHHhh----cC-CCc-EEEecccc------------
Q 039837          107 GIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPI-----YEKVK----GL-GLP-IIVLGEER------------  163 (544)
Q Consensus       107 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-----~~~~~----~~-~~~-~~~~~~~~------------  163 (544)
                      ||+++| +++|+++.++.+++.++++.+++++++++...     ...+.    .. .++ ++.++...            
T Consensus       102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  180 (632)
T PRK07529        102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPL  180 (632)
T ss_pred             HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccc
Confidence            999999 57999999999999999999999999997543     11221    11 122 22222111            


Q ss_pred             -----cccccCHHHHHHhhhhc--------CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEE
Q 039837          164 -----IESAINWSELIEAADKA--------GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTL  230 (544)
Q Consensus       164 -----~~~~~~~~~~~~~~~~~--------~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~  230 (544)
                           ......+..........        .........+||||||.||+|.+||+++.+++......+  ....+++++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~--~~~~~d~~l  258 (632)
T PRK07529        181 IRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL--GLGPGDTVF  258 (632)
T ss_pred             cccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc--CCCCCCEEE
Confidence                 11122344433321110        112334567899999999999999999998877666655  668899999


Q ss_pred             EecchhHHHHHHHHHHhhHhccceEEEcCcc---C---HHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCcccccc
Q 039837          231 GLIPFFHIYGITGICCATLRNKGKVVMMNRF---E---LRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQL  304 (544)
Q Consensus       231 ~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~---~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~  304 (544)
                      +.+|++|.+++...++.++..|+++++.++.   +   ...+++.++++++|++.++|+++..|++.... ..++++++.
T Consensus       259 ~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-~~~~~slr~  337 (632)
T PRK07529        259 CGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-GHDISSLRY  337 (632)
T ss_pred             EecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-CCCccceEE
Confidence            9999999999888889999999999997642   1   35788999999999999999999999886542 345677777


Q ss_pred             ccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeC-CCC---C
Q 039837          305 RAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINP-ETG---K  380 (544)
Q Consensus       305 ~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~---~  380 (544)
                        +++||+++++++.++|.+.+ ++++++.||+||++.++....    .......+++|.|+|++.++++.. ++|   .
T Consensus       338 --v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~----~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~  410 (632)
T PRK07529        338 --ALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNP----PDGERRIGSVGLRLPYQRVRVVILDDAGRYLR  410 (632)
T ss_pred             --EEEcCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccCC----ccccccCCCcccccCCceEEEEEcCCCCcccc
Confidence              99999999999999999988 899999999999986654432    112335688999999999998531 455   7


Q ss_pred             cCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhc
Q 039837          381 SLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLT  460 (544)
Q Consensus       381 ~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~  460 (544)
                      +++.|+.|||+|+|++++.||++++. +...+..++||+|||+|++++||++++.||.+|+||++|++|+|.+||++|.+
T Consensus       411 ~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~  489 (632)
T PRK07529        411 DCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLR  489 (632)
T ss_pred             cCCCCCceEEEEECCCccccccCCcc-ccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHh
Confidence            89999999999999999999998654 44555578999999999999999999999999999999999999999999999


Q ss_pred             CCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhccc-CCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          461 HPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVA-TYKKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       461 ~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~-~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      ||+|.+++|++.+++..|+.+++++++.++...+.+++.++++++++ .+++|..++++++||+|.+||++|++|++.+.
T Consensus       490 ~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~~  569 (632)
T PRK07529        490 HPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRRDAI  569 (632)
T ss_pred             CCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHHHHHHHHHhcchhccCCcEEEEecCCCCCCCCcccHHHHHHHHH
Confidence            99999999999999988999999999998888888999999999997 57999999999999999999999999999886


Q ss_pred             Hh
Q 039837          540 EK  541 (544)
Q Consensus       540 ~~  541 (544)
                      ++
T Consensus       570 ~~  571 (632)
T PRK07529        570 RR  571 (632)
T ss_pred             HH
Confidence            54

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.5e-70  Score=573.44  Aligned_cols=493  Identities=20%  Similarity=0.268  Sum_probs=397.3

Q ss_pred             CCH-HHHHHhhhhh--cCCceEEEEccC----CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHH
Q 039837           36 VTL-PDFVLQDAEL--YADKVAFVEAVS----GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGI  108 (544)
Q Consensus        36 ~~l-~~~l~~~a~~--~p~~~a~~~~~~----~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~  108 (544)
                      .|. ...++++++.  +|+++|+++..+    .+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||
T Consensus        58 ~n~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~  137 (647)
T PTZ00237         58 LNTCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSC  137 (647)
T ss_pred             eeHHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            344 4455566654  799999986421    368999999999999999999999999999999999999999999999


Q ss_pred             HHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccc---------hHHHhhc---C---CC-cEEEecccc---------
Q 039837          109 MAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAP---------IYEKVKG---L---GL-PIIVLGEER---------  163 (544)
Q Consensus       109 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~---------~~~~~~~---~---~~-~~~~~~~~~---------  163 (544)
                      +++|++++|+++.++.+++.+++++++++++|+++.         ..+.+.+   .   .. .++.+....         
T Consensus       138 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~  217 (647)
T PTZ00237        138 ARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKK  217 (647)
T ss_pred             HHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccccccccc
Confidence            999999999999999999999999999999999752         1111111   0   11 222221100         


Q ss_pred             ------cccccCHHHHHHhh-----h------hcCCCCCCCCCCCCCCCcCcceeeccHHH-HHHHHHhhccccCCcccC
Q 039837          164 ------IESAINWSELIEAA-----D------KAGNNFSNDDDVKQTDLWISKGVMLTHRN-LVANLCSTLFSVVPEMIG  225 (544)
Q Consensus       164 ------~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~tsgttG~PKgV~~t~~~-l~~~~~~~~~~~~~~~~~  225 (544)
                            ......|+++....     .      .........+.+||||||.||||+++|.+ +.+........+  ....
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~--~~~~  295 (647)
T PTZ00237        218 IETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII--EKDI  295 (647)
T ss_pred             ccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc--CCCC
Confidence                  01123345443311     0      01223344678999999999999999998 444333323333  5567


Q ss_pred             ccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc--cC----HHHHHHHHHHcCceeeecchHHHHHHhcCCC-----C
Q 039837          226 QVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR--FE----LRAFLDALITHEVTFAPIVPPIILSLVKDPI-----V  294 (544)
Q Consensus       226 ~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~  294 (544)
                      .+++++..|+.|+.+. ..++.++..|+++++.+.  ..    +..+++.++++++|++.++|+++..|++...     .
T Consensus       296 ~d~~~~~~~~~w~~~~-~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~  374 (647)
T PTZ00237        296 PTVVFSHSSIGWVSFH-GFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIR  374 (647)
T ss_pred             CcEEEEcCCCceEeeH-HHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccc
Confidence            8899999999988665 467889999999998763  12    6789999999999999999999999987432     1


Q ss_pred             CccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEE
Q 039837          295 DEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFI  374 (544)
Q Consensus       295 ~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~  374 (544)
                      ...+++++|.  ++++|+++++++.+++.+.+ ++.+++.||+||++...+...    .......+++|+|+++++++|+
T Consensus       375 ~~~~l~~Lr~--i~~~G~~l~~~~~~~~~~~~-g~~i~~~yG~TE~~~~~~~~~----~~~~~~~~s~G~p~~g~~~~i~  447 (647)
T PTZ00237        375 SKYDLSNLKE--IWCGGEVIEESIPEYIENKL-KIKSSRGYGQTEIGITYLYCY----GHINIPYNATGVPSIFIKPSIL  447 (647)
T ss_pred             cccCcchheE--EEecCccCCHHHHHHHHHhc-CCCEEeeechHHhChhhhccC----CCCCCCCCCCccCcCCceEEEE
Confidence            3346777777  99999999999999999988 799999999999986554322    1122334789999999999999


Q ss_pred             eCCCCCcCCCCCCceEEEecc---cccccccCChhhhhcccCC-CCeeecCceEEEcCCCcEEEEeecCCceeecceeeC
Q 039837          375 NPETGKSLPSNTPGELCVRSQ---CVMQGYYNNEEETARTIDK-NGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVA  450 (544)
Q Consensus       375 d~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~  450 (544)
                      | ++|++++.|+.|||++++|   +++.|||++++.+...|.. +|||+|||+|++|++|++++.||+||+||++|++|+
T Consensus       448 d-~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~  526 (647)
T PTZ00237        448 S-EDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQ  526 (647)
T ss_pred             C-CCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeC
Confidence            9 5899999999999999986   7899999999999877743 789999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCC---CCCH----HHHHHHHHhcccCCCceeEEEEeecCCC
Q 039837          451 PAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA---KESE----DDIMDFVASNVATYKKVRVLHFVDGIPK  523 (544)
Q Consensus       451 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---~~~~----~~l~~~l~~~l~~~~~p~~~~~~~~~P~  523 (544)
                      |.+||++|.+||.|.+++|++++++..|+.++++|++.++.   ..+.    +++.++++++|+++++|..|+++++||+
T Consensus       527 p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~  606 (647)
T PTZ00237        527 LNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPK  606 (647)
T ss_pred             HHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCC
Confidence            99999999999999999999999998899999999987532   2233    4567788889999999999999999999


Q ss_pred             CCCcccchHHHHHHHH
Q 039837          524 SHSGKIMRRILKDKML  539 (544)
Q Consensus       524 t~~GKi~r~~l~~~~~  539 (544)
                      |.+||++|+.|++++.
T Consensus       607 T~sGKi~R~~Lr~~~~  622 (647)
T PTZ00237        607 TKTGKIPRQIISKFLN  622 (647)
T ss_pred             CCCccEeHHHHHHHHc
Confidence            9999999999999874

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1e-69  Score=571.47  Aligned_cols=500  Identities=21%  Similarity=0.257  Sum_probs=408.2

Q ss_pred             CCCCHH-HHHHhhhhhcCCceEEEEcc----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHH
Q 039837           34 ENVTLP-DFVLQDAELYADKVAFVEAV----SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGI  108 (544)
Q Consensus        34 ~~~~l~-~~l~~~a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~  108 (544)
                      ...|+. +.|+++++.+|+++|+++..    .++++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||
T Consensus        49 ~~~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~  128 (628)
T TIGR02316        49 GRTNLCHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLAC  128 (628)
T ss_pred             CEeeHHHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            334554 56778888899999998631    2368999999999999999999999999999999999999999999999


Q ss_pred             HHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchH---------HHhh----c---CCCcEEEeccccc------cc
Q 039837          109 MAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIY---------EKVK----G---LGLPIIVLGEERI------ES  166 (544)
Q Consensus       109 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~----~---~~~~~~~~~~~~~------~~  166 (544)
                      +++|++++|+++.++.+++..++++++++++|+++...         ..+.    .   ....++.++....      ..
T Consensus       129 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~  208 (628)
T TIGR02316       129 ARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGR  208 (628)
T ss_pred             HHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCc
Confidence            99999999999999999999999999999999976421         1111    1   1123344432110      01


Q ss_pred             ccCHHHHHHhhhh-------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHH-HHhhccccCCcccCccEEEEecchhHH
Q 039837          167 AINWSELIEAADK-------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVAN-LCSTLFSVVPEMIGQVTTLGLIPFFHI  238 (544)
Q Consensus       167 ~~~~~~~~~~~~~-------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~  238 (544)
                      ...+.++......       ........+.+||||||.||||+++|.++... .......+  ++.++|++++..|++|.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~  286 (628)
T TIGR02316       209 DVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF--GIRAGQVMFSASDVGWV  286 (628)
T ss_pred             cccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc--CCCCCcEEEEcCCCCee
Confidence            2234443322111       11233456789999999999999999997543 33333444  67888999999999999


Q ss_pred             HHHHHHHHhhHhccceEEEcCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCC--CCccCccccccccEEEecC
Q 039837          239 YGITGICCATLRNKGKVVMMNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPI--VDEFDLSKLQLRAVMTAAA  312 (544)
Q Consensus       239 ~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~v~~~G~  312 (544)
                      .|+...++.++..|+++++.+.    .++..+++.++++++|+++++|+++..|.+...  ....+++++|.  +++||+
T Consensus       287 ~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~--~~~gGe  364 (628)
T TIGR02316       287 VGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHW--LFLAGE  364 (628)
T ss_pred             ehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeE--EEEecC
Confidence            9877788999999999999763    478899999999999999999999999887543  23456777777  999999


Q ss_pred             CCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEE
Q 039837          313 PLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCV  392 (544)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v  392 (544)
                      ++++++.+++.+.+ +..+++.||+||++..++...... .......+++|+|++|++++|+|+++|++++.|+.|||++
T Consensus       365 ~l~~~~~~~~~~~~-~~~~~~~yG~TE~~~~~~~~~~~~-~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v  442 (628)
T TIGR02316       365 PLDEPTAHWITDGL-GKPVIDNYWQTETGWPVLAIMPGL-DLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTV  442 (628)
T ss_pred             CCCHHHHHHHHHHh-CCCEEecccccccCceeecCCCCC-CcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEE
Confidence            99999999999888 788999999999985443322110 1123456789999999999999966899999999999999


Q ss_pred             ecc---cccccccCChhhhhccc---CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccc
Q 039837          393 RSQ---CVMQGYYNNEEETARTI---DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVED  466 (544)
Q Consensus       393 ~~~---~~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~  466 (544)
                      +||   +.+.|||++++.+...+   ..++||+|||+|++|+||+++++||.||+||++|++|+|.+||++|.+||+|.+
T Consensus       443 ~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~e  522 (628)
T TIGR02316       443 VPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAE  522 (628)
T ss_pred             ecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcce
Confidence            998   56789999988776543   246799999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeecCCCCCceeEEEEEeCCCCCC--------CHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHH
Q 039837          467 AAVVSLPDEEAGEIPAACVVMNPNAKE--------SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM  538 (544)
Q Consensus       467 ~~v~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~  538 (544)
                      ++|++++++..|+.+++++++.++...        ..++|+++++++|+.+++|..++++++||+|.+||++|+.|++.+
T Consensus       523 a~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~  602 (628)
T TIGR02316       523 VAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALA  602 (628)
T ss_pred             EEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHH
Confidence            999999999889999999998765432        246799999999999999999999999999999999999999876


Q ss_pred             H
Q 039837          539 L  539 (544)
Q Consensus       539 ~  539 (544)
                      .
T Consensus       603 ~  603 (628)
T TIGR02316       603 E  603 (628)
T ss_pred             c
Confidence            4

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1e-68  Score=557.82  Aligned_cols=496  Identities=29%  Similarity=0.471  Sum_probs=425.1

Q ss_pred             CCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCccHHHHHHHHHHhc
Q 039837           34 ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSL-GLRKGQVVIVVLPNVAEYGIVALGIMAAG  112 (544)
Q Consensus        34 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G  112 (544)
                      ...|+.++|.++|+.+|+++|+.+.  ++++||+||.+++.++|.+|.+. |+++||+|+++++|+++++++++||+++|
T Consensus         8 ~~~tl~~~l~~~a~~~~~~~a~~~~--~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G   85 (546)
T PRK08314          8 PETSLFHNLEVSARRYPDKTAIVFY--GRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRAN   85 (546)
T ss_pred             CCCCHHHHHHHHHHHcCCCcceeec--CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcC
Confidence            3568999999999999999999986  67999999999999999999999 99999999999999999999999999999


Q ss_pred             CeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC----CCcEEEecc--cc-----------------------
Q 039837          113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----GLPIIVLGE--ER-----------------------  163 (544)
Q Consensus       113 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~~--~~-----------------------  163 (544)
                      ++++|+++..+.+++.++++.+++++++++.+....+...    ....+.+..  ..                       
T Consensus        86 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (546)
T PRK08314         86 AVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALA  165 (546)
T ss_pred             cEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCccccccccccccccc
Confidence            9999999999999999999999999999988766655432    122121110  00                       


Q ss_pred             cccccCHHHHHHhhh-----hcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHH
Q 039837          164 IESAINWSELIEAAD-----KAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHI  238 (544)
Q Consensus       164 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  238 (544)
                      ......+++......     .........+.+||||||.||+|.+||++++.++......+  +....+++++.+|++|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~  243 (546)
T PRK08314        166 PGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS--NSTPESVVLAVLPLFHV  243 (546)
T ss_pred             ccccccHHHHhcccCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh--CCCCCceEEEEcCchHH
Confidence            001123333322210     01112334568899999999999999999999888776666  67889999999999999


Q ss_pred             HHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhH
Q 039837          239 YGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDL  318 (544)
Q Consensus       239 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~  318 (544)
                      +|+...++.++..|+++++.+.+++..+.+.++++++|++.++|+++..+++.......++++++.  +++||+++++++
T Consensus       244 ~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~--~~~gG~~~~~~~  321 (546)
T PRK08314        244 TGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRY--IGGGGAAMPEAV  321 (546)
T ss_pred             HHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhhe--eeeccccCCHHH
Confidence            998888899999999999999889999999999999999999999999998765545556667666  999999999999


Q ss_pred             HHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEeccccc
Q 039837          319 LSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVM  398 (544)
Q Consensus       319 ~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~  398 (544)
                      .+++.+.| +.++++.||+||++.......     .......++|.|+++++++++|++++..++.|+.|||+++|++++
T Consensus       322 ~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~-----~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~  395 (546)
T PRK08314        322 AERLKELT-GLDYVEGYGLTETMAQTHSNP-----PDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVF  395 (546)
T ss_pred             HHHHHHHc-CCcEEecccccccccceecCC-----CcCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchh
Confidence            99999988 789999999999987654432     122345789999999999999987899999999999999999999


Q ss_pred             ccccCChhhhhcccC---CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCC
Q 039837          399 QGYYNNEEETARTID---KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDE  475 (544)
Q Consensus       399 ~gy~~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~  475 (544)
                      .||+++++.+...|.   +.+||+|||+|+++++|.+++.||.||+|+++|.+|+|.+||++|.++|+|.+++|++.++.
T Consensus       396 ~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~  475 (546)
T PRK08314        396 KGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDP  475 (546)
T ss_pred             ccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCc
Confidence            999999998887762   34699999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCceeEEEEEeCCCC--CCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          476 EAGEIPAACVVMNPNA--KESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       476 ~~~~~~~~~v~~~~~~--~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ..++.+++++++.++.  ..+.+++.++++++|+++++|..++++++||+|.+||++|++|++..+..
T Consensus       476 ~~~~~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~~~~~  543 (546)
T PRK08314        476 RRGETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKAR  543 (546)
T ss_pred             ccCceeEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHhhh
Confidence            8889999999987754  34568999999999999999999999999999999999999999876653

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.8e-69  Score=571.42  Aligned_cols=497  Identities=24%  Similarity=0.310  Sum_probs=400.1

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEc---cC----CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHH
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEA---VS----GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA  105 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~---~~----~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~  105 (544)
                      +...|+.++|+++|+++|+++|+...   .+    .+.+||+||.++++++|++|++.|+++||+|+++++|+++|++++
T Consensus        41 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~  120 (651)
T PLN02736         41 PEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVD  120 (651)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHH
Confidence            34468999999999999999998431   11    146999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-----CCcEEE-ecccc----------cccccC
Q 039837          106 LGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-----GLPIIV-LGEER----------IESAIN  169 (544)
Q Consensus       106 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~~~~-~~~~~----------~~~~~~  169 (544)
                      +||+++|++++|+++.++.+++.+++++++++++|++.+....+...     .++.+. .+...          ......
T Consensus       121 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  200 (651)
T PLN02736        121 HACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVT  200 (651)
T ss_pred             HHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEE
Confidence            99999999999999999999999999999999999988766554331     123322 22110          011234


Q ss_pred             HHHHHHhhhh-------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHH
Q 039837          170 WSELIEAADK-------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGIT  242 (544)
Q Consensus       170 ~~~~~~~~~~-------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~  242 (544)
                      ++++......       ........+.+||||||.||||++||+++..++......+  ++.+.+++++.+|++|.+++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~--~~~~~d~~l~~lPl~h~~~~~  278 (651)
T PLN02736        201 YSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLST--KFYPSDVHISYLPLAHIYERV  278 (651)
T ss_pred             HHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhcc--CCCCCCEEEEeCCHHHHHHHH
Confidence            5554432211       1122334567999999999999999999999888877666  678899999999999999985


Q ss_pred             HHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCC-----------------------------
Q 039837          243 GICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPI-----------------------------  293 (544)
Q Consensus       243 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------------  293 (544)
                       .++.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+...                             
T Consensus       279 -~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (651)
T PLN02736        279 -NQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGK  356 (651)
T ss_pred             -HHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCC
Confidence             56778999999988764 78899999999999999999999988764310                             


Q ss_pred             CCcc------------Cc-cccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCC
Q 039837          294 VDEF------------DL-SKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKN  360 (544)
Q Consensus       294 ~~~~------------~~-~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~  360 (544)
                      ....            .+ +++|.  +++||+++++++.+++.+.+ ++.+++.||+||++..++...    . .....+
T Consensus       357 ~~~~~~~~~~~~~~~~~lg~~lr~--~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~----~-~~~~~~  428 (651)
T PLN02736        357 NPSPMWDRLVFNKIKAKLGGRVRF--MSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETSCVISGMD----E-GDNLSG  428 (651)
T ss_pred             CCCchHHHHHHHHHHHHhcCcEEE--EEeCCCCCCHHHHHHHHHHh-CCCeEEEechHHhchheeccC----C-CCCCCC
Confidence            0000            01 24555  99999999999999999888 789999999999986655432    1 234568


Q ss_pred             cccccCCCceEEEEeCCCCC---cCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEee
Q 039837          361 SVGFILPNLEVKFINPETGK---SLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDR  437 (544)
Q Consensus       361 ~~G~~~~~~~~~i~d~~~~~---~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR  437 (544)
                      ++|+|+|+++++|+|.+++.   ...++..|||+++||+++.|||++|+.|.+.|+.+|||+|||+|++|+||++++.||
T Consensus       429 ~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR  508 (651)
T PLN02736        429 HVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDR  508 (651)
T ss_pred             ccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEe
Confidence            89999999999999843332   223345799999999999999999999999998899999999999999999999999


Q ss_pred             cCCceee-cceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCC--------CCCCHHHHHHHHH-----
Q 039837          438 IKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN--------AKESEDDIMDFVA-----  503 (544)
Q Consensus       438 ~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~l~~~l~-----  503 (544)
                      .+|+||+ +|++|+|.+||++|.+||.|.+++|++.   ..++.++|++++.++        ...+..++.++++     
T Consensus       509 ~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (651)
T PLN02736        509 KKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVR  585 (651)
T ss_pred             chhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHH
Confidence            9999997 7999999999999999999999999983   346789999998653        1122222222222     


Q ss_pred             -------------hcccCCCceeEEEEeecCC------CCCCcccchHHHHHHHHHhhhC
Q 039837          504 -------------SNVATYKKVRVLHFVDGIP------KSHSGKIMRRILKDKMLEKMRK  544 (544)
Q Consensus       504 -------------~~l~~~~~p~~~~~~~~~P------~t~~GKi~r~~l~~~~~~~~~~  544 (544)
                                   +.|+.+++|..|+++++.|      +|++||++|+++++.|.++|++
T Consensus       586 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i~~  645 (651)
T PLN02736        586 AAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISD  645 (651)
T ss_pred             HHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHHHH
Confidence                         2599999999999998876      7999999999999999998863

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.5e-69  Score=558.79  Aligned_cols=497  Identities=29%  Similarity=0.485  Sum_probs=417.2

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRS-LGLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      ..|+.+.|++.++.+|+++|+++.  ++++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||+++|+
T Consensus        23 ~~~~~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga  100 (562)
T PRK05677         23 YPNIQAVLKQSCQRFADKPAFSNL--GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGL  100 (562)
T ss_pred             cCcHHHHHHHHHHhCCCCeeEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCe
Confidence            358999999999999999999976  6899999999999999999997 5999999999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhc----CCCcEEEeccc-c-------------------------
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKG----LGLPIIVLGEE-R-------------------------  163 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~~-~-------------------------  163 (544)
                      +++|+++.++.+++.++++.++++++|++.+....+.+    .+.+.+.+.+. .                         
T Consensus       101 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (562)
T PRK05677        101 IVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYH  180 (562)
T ss_pred             EEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccccccC
Confidence            99999999999999999999999999998765443322    12222222110 0                         


Q ss_pred             cccccCHHHHHHhhhh-------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCccc-CccEEEEecch
Q 039837          164 IESAINWSELIEAADK-------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMI-GQVTTLGLIPF  235 (544)
Q Consensus       164 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~p~  235 (544)
                      ......+.+.......       ........+.+||||||.||||+++|+++...+......+..... ..+.+++.+|+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl  260 (562)
T PRK05677        181 LPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPL  260 (562)
T ss_pred             CcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcH
Confidence            0001112222211100       011223356789999999999999999998876554433321233 34688999999


Q ss_pred             hHHHHHHHHHHhhHhccceEEEcC-ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCC
Q 039837          236 FHIYGITGICCATLRNKGKVVMMN-RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPL  314 (544)
Q Consensus       236 ~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~  314 (544)
                      +|.+++...++.++..|.+.++.+ ..++..+++.++++++|++.++|+++..|++........++++|.  +++||+++
T Consensus       261 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~--v~~gG~~~  338 (562)
T PRK05677        261 YHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKL--TLSGGMAL  338 (562)
T ss_pred             HHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceE--EEEcCccC
Confidence            999998777788888888776654 568899999999999999999999999998765544445667667  99999999


Q ss_pred             CHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEec
Q 039837          315 APDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRS  394 (544)
Q Consensus       315 ~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~  394 (544)
                      ++++.++|.+.+ ++++++.||+||++.++.....     .....+++|.|++++.++++| +++..++.|+.|||+++|
T Consensus       339 ~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-----~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g  411 (562)
T PRK05677        339 QLATAERWKEVT-GCAICEGYGMTETSPVVSVNPS-----QAIQVGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVKG  411 (562)
T ss_pred             CHHHHHHHHHHc-CCCeeccCCccccCcceeecCc-----cCCCCCccCccCCCCEEEEEC-CCCCCCCCCCCeEEEEec
Confidence            999999999987 8999999999999876654321     233457899999999999999 578899999999999999


Q ss_pred             ccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecC
Q 039837          395 QCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPD  474 (544)
Q Consensus       395 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  474 (544)
                      +.++.||+++++.+...|..++||+|||+|+++++|.+++.||.+|+|+++|.+|+|.+||+.|+++++|.+++|+++++
T Consensus       412 ~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~  491 (562)
T PRK05677        412 PQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPD  491 (562)
T ss_pred             CccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccC
Confidence            99999999999999999988999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837          475 EEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM  542 (544)
Q Consensus       475 ~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~  542 (544)
                      ...++.+++++++.++...+.+++.++++++|+++++|..++++++||+|++||++|++|++++.++.
T Consensus       492 ~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~~  559 (562)
T PRK05677        492 EKSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKKA  559 (562)
T ss_pred             ccCCceEEEEEEeCCCCCCCHHHHHHHHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHHHHHhc
Confidence            88888999999887776778899999999999999999999999999999999999999999887765

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=2.1e-68  Score=554.34  Aligned_cols=492  Identities=26%  Similarity=0.360  Sum_probs=419.4

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccC----CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHH
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVS----GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA  110 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~  110 (544)
                      ..|+.+.|.+.++.+|+++|+++...    .+.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||++
T Consensus        23 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~  102 (547)
T PRK13295         23 DRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSR  102 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence            45899999999999999999987521    17899999999999999999999999999999999999999999999999


Q ss_pred             hcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchH-----HHhhc----C-CCc-EEEecccccccccCHHHHHHhh--
Q 039837          111 AGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIY-----EKVKG----L-GLP-IIVLGEERIESAINWSELIEAA--  177 (544)
Q Consensus       111 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~----~-~~~-~~~~~~~~~~~~~~~~~~~~~~--  177 (544)
                      +|++++|+++.++.+++.++++.++++++++++...     +.+..    . .+. ++.++..   ....+..+....  
T Consensus       103 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  179 (547)
T PRK13295        103 IGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGD---GADSFEALLITPAW  179 (547)
T ss_pred             cCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCC---CccCHHHHhhCCcc
Confidence            999999999999999999999999999999987531     11111    1 112 2222211   112233322110  


Q ss_pred             ------------hhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHH
Q 039837          178 ------------DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGIC  245 (544)
Q Consensus       178 ------------~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~  245 (544)
                                  ............+||||||.||+|++||+++...+......+  ++..+++++..+|++|..++...+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~l~~~p~~h~~g~~~~~  257 (547)
T PRK13295        180 EQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL--GLGADDVILMASPMAHQTGFMYGL  257 (547)
T ss_pred             ccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh--CCCCCCeEEEecCchhhhhHHHHH
Confidence                        001112334567899999999999999999998887776666  678899999999999999988888


Q ss_pred             HhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhh
Q 039837          246 CATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKK  325 (544)
Q Consensus       246 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~  325 (544)
                      +.++..|+++++.+..++..+++.++++++|++.++|+++..|..........+++++.  +++||+++++++.+++.+.
T Consensus       258 ~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~--~~~~G~~l~~~~~~~~~~~  335 (547)
T PRK13295        258 MMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRT--FLCAGAPIPGALVERARAA  335 (547)
T ss_pred             HHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceE--EEEecCCCCHHHHHHHHHH
Confidence            99999999999998889999999999999999999999999998876555566777777  9999999999999999999


Q ss_pred             cCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCCh
Q 039837          326 FPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNE  405 (544)
Q Consensus       326 ~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~  405 (544)
                      + ++++++.||+||++.+.+....   ........++|+|+++++++|+| +++.+++.|+.|||+++|+.++.||++++
T Consensus       336 ~-~~~~~~~YG~TE~~~~~~~~~~---~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~  410 (547)
T PRK13295        336 L-GAKIVSAWGMTENGAVTLTKLD---DPDERASTTDGCPLPGVEVRVVD-ADGAPLPAGQIGRLQVRGCSNFGGYLKRP  410 (547)
T ss_pred             h-CCCeEEeccCCCCCCeeeccCC---CcchhccCccccccCCcEEEEEC-CCCCCCCCCCCCeEEEEcCcccccccCCc
Confidence            8 8999999999999876544321   11123346789999999999999 57889999999999999999999999999


Q ss_pred             hhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEE
Q 039837          406 EETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACV  485 (544)
Q Consensus       406 ~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v  485 (544)
                      +.+...  .+|||+|||+|+++++|++++.||.+|+++++|.+++|.+||++|+++++|.+++|++++++..++.+++++
T Consensus       411 ~~t~~~--~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v  488 (547)
T PRK13295        411 QLNGTD--ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFV  488 (547)
T ss_pred             cccccC--CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEE
Confidence            888765  578999999999999999999999999999999999999999999999999999999999888888999999


Q ss_pred             EeCCCCCCCHHHHHHHHHh-cccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          486 VMNPNAKESEDDIMDFVAS-NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       486 ~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      ++.++...+.+++.+++++ .++++++|..++++++||+|.+||++|++|++++.+
T Consensus       489 ~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~~  544 (547)
T PRK13295        489 VPRPGQSLDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRG  544 (547)
T ss_pred             EeCCCCCCCHHHHHHHHHhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHhc
Confidence            9887766777899999986 799999999999999999999999999999998864

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.9e-68  Score=562.85  Aligned_cols=498  Identities=24%  Similarity=0.329  Sum_probs=409.2

Q ss_pred             CCH-HHHHHhhhhhcCCceEEEEccC----CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHH
Q 039837           36 VTL-PDFVLQDAELYADKVAFVEAVS----GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA  110 (544)
Q Consensus        36 ~~l-~~~l~~~a~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~  110 (544)
                      .|+ ...|+++++.+|+++|+++..+    .+++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||++
T Consensus        56 ~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  135 (625)
T TIGR02188        56 LNVSYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACAR  135 (625)
T ss_pred             EEHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            344 4456678888999999986422    35899999999999999999999999999999999999999999999999


Q ss_pred             hcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHH---------Hh----hcC--CCc-EEEeccccc------cccc
Q 039837          111 AGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYE---------KV----KGL--GLP-IIVLGEERI------ESAI  168 (544)
Q Consensus       111 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~----~~~--~~~-~~~~~~~~~------~~~~  168 (544)
                      +|++++|+++.++.+++.+++++++++++|+++....         .+    ...  .++ +++++....      ....
T Consensus       136 ~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (625)
T TIGR02188       136 IGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDV  215 (625)
T ss_pred             hCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccc
Confidence            9999999999999999999999999999999865321         11    111  122 223221110      0112


Q ss_pred             CHHHHHHhhhh------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHh-hccccCCcccCccEEEEecchhHHHHH
Q 039837          169 NWSELIEAADK------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCS-TLFSVVPEMIGQVTTLGLIPFFHIYGI  241 (544)
Q Consensus       169 ~~~~~~~~~~~------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~g~  241 (544)
                      .+.++......      ........+.+||||||.||||+++|++++..... ....+  ++..++++++..|++|..+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~g~  293 (625)
T TIGR02188       216 WWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF--DIKDGDIFWCTADVGWITGH  293 (625)
T ss_pred             cHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc--CCCCCcEEEECCCchhhhcc
Confidence            34443322111      11223446789999999999999999998654433 33333  67788999999999999987


Q ss_pred             HHHHHhhHhccceEEEcCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCC--CccCccccccccEEEecCCCC
Q 039837          242 TGICCATLRNKGKVVMMNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPIV--DEFDLSKLQLRAVMTAAAPLA  315 (544)
Q Consensus       242 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~v~~~G~~~~  315 (544)
                      ...++.++..|+++++.+.    .++..+++.++++++|++.++|+++..|.+....  ...++++++.  ++++|++++
T Consensus       294 ~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~--i~~~G~~l~  371 (625)
T TIGR02188       294 SYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRL--LGSVGEPIN  371 (625)
T ss_pred             HHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeE--EEEecCCCC
Confidence            7778999999999998753    3789999999999999999999999999876532  2345677777  999999999


Q ss_pred             HhHHHHHHhhcC--CCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCC-CCCCceEEE
Q 039837          316 PDLLSSFEKKFP--GVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLP-SNTPGELCV  392 (544)
Q Consensus       316 ~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~-~g~~Gel~v  392 (544)
                      +++++++.+.++  ++++++.||+||++..++.....   ......+++|+|++|++++|+| ++|++++ .|+.|||++
T Consensus       372 ~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~---~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~~GeL~v  447 (625)
T TIGR02188       372 PEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPG---ATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLVI  447 (625)
T ss_pred             HHHHHHHHHHcCCCCCceEecccccccCCceeecCCC---CCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCCeEEEEE
Confidence            999999999884  37899999999998765433211   1234567899999999999999 7899998 999999999


Q ss_pred             ec--ccccccccCChhhhhcccC--CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceE
Q 039837          393 RS--QCVMQGYYNNEEETARTID--KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAA  468 (544)
Q Consensus       393 ~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  468 (544)
                      +|  |+++.|||++++.+...+.  .+|||+|||+|++|++|++++.||+||+||++|++|+|.+||++|.++|+|.+++
T Consensus       448 ~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~  527 (625)
T TIGR02188       448 KQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAA  527 (625)
T ss_pred             ccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEE
Confidence            99  6899999999987776553  3789999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          469 VVSLPDEEAGEIPAACVVMNPNAKESE---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       469 v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      |++++++..|+.+++++++.++...+.   ++++++++++|+.+++|..|+++++||+|.+||++|+.|++++..+
T Consensus       528 vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~  603 (625)
T TIGR02188       528 VVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE  603 (625)
T ss_pred             EEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence            999999988999999999987765443   6899999999999999999999999999999999999999987543

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.3e-68  Score=556.36  Aligned_cols=500  Identities=32%  Similarity=0.485  Sum_probs=425.2

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      .+|+.+.|.++++++|+++|+.+.  ++.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        31 ~~~l~~~~~~~~~~~p~~~a~~~~--~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  108 (573)
T PRK05605         31 DTTLVDLYDNAVARFGDRPALDFF--GATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAV  108 (573)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcE
Confidence            458999999999999999999986  688999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC----CCcEE-Eeccc---------------------------
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----GLPII-VLGEE---------------------------  162 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~-~~~~~---------------------------  162 (544)
                      ++|+++.++.+++.+++++++++++|+++.....+...    ....+ .++..                           
T Consensus       109 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
T PRK05605        109 VVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTG  188 (573)
T ss_pred             EeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeeccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999987765544321    11111 11100                           


Q ss_pred             ccccccCHHHHHHhhhh----------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEe
Q 039837          163 RIESAINWSELIEAADK----------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGL  232 (544)
Q Consensus       163 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~  232 (544)
                      .......|+++......          ..........+||||||.||+|.+||+++...+......+..-....++++..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~  268 (573)
T PRK05605        189 PAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAA  268 (573)
T ss_pred             CCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEe
Confidence            00112234443322110          11223345679999999999999999999887764433221012346899999


Q ss_pred             cchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecC
Q 039837          233 IPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAA  312 (544)
Q Consensus       233 ~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~  312 (544)
                      +|++|.+|+...++.++..|+++++.+..++..+++.++++++|++.++|+++..|++........+++++.  +++||+
T Consensus       269 ~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--i~~gg~  346 (573)
T PRK05605        269 LPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRN--AFSGAM  346 (573)
T ss_pred             cChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccE--EEECCC
Confidence            999999998777888899999999988889999999999999999999999999999877666666777777  999999


Q ss_pred             CCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCC-CCcCCCCCCceEE
Q 039837          313 PLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPET-GKSLPSNTPGELC  391 (544)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~-~~~~~~g~~Gel~  391 (544)
                      ++++++.++|.+.+ ++.+++.||+||++.++.....    ......+++|.|++++.++|+|+++ +.+++.|+.|||+
T Consensus       347 ~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~  421 (573)
T PRK05605        347 ALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPM----SDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELL  421 (573)
T ss_pred             cCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCc----ccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEE
Confidence            99999999999887 7899999999999876655431    1233457899999999999999665 6889999999999


Q ss_pred             EecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEe
Q 039837          392 VRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS  471 (544)
Q Consensus       392 v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~  471 (544)
                      ++|+.++.||++++..+...| .+|||+|||+|+++++|++++.||.+|+++.+|++|+|.+||+++.+++.|.+++|++
T Consensus       422 v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~  500 (573)
T PRK05605        422 VRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVG  500 (573)
T ss_pred             EecCchhhhhcCChhHhhhcc-cCCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEe
Confidence            999999999999999998888 5679999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhhhC
Q 039837          472 LPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK  544 (544)
Q Consensus       472 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~~~  544 (544)
                      .++...++.+++++++.++...+.+++.++++++|+.+++|..++++++||+|.+||++|++|++++.+++++
T Consensus       501 ~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~~~~~~  573 (573)
T PRK05605        501 LPREDGSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVREELLEKLGA  573 (573)
T ss_pred             eecccCCeEEEEEEEECCCCCCCHHHHHHHHHHhCccccCCcEEEEeccCCCCCcccccHHHHHHHHHHHhcC
Confidence            9988888899999998877677889999999999999999999999999999999999999999999888753

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=6.8e-68  Score=553.21  Aligned_cols=509  Identities=30%  Similarity=0.482  Sum_probs=431.5

Q ss_pred             CCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHH
Q 039837           28 PAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALG  107 (544)
Q Consensus        28 ~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA  107 (544)
                      +..+...+.|+.++|.+.++++|+++|+++...++.+||+||.++++++|.+|.+.|+++||+|+++++|++++++++||
T Consensus         8 ~~~~~~~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la   87 (559)
T PRK08315          8 PTDVPLLEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFA   87 (559)
T ss_pred             CCcCChhhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHH
Confidence            34445556799999999999999999998865567899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHH-----Hhhc----C--------------C-CcEEEecccc
Q 039837          108 IMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYE-----KVKG----L--------------G-LPIIVLGEER  163 (544)
Q Consensus       108 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~----~--------------~-~~~~~~~~~~  163 (544)
                      |+++|++++|+++..+.+++..+++.+++++++++.....     .+.+    .              . ...+..+...
T Consensus        88 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (559)
T PRK08315         88 TAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK  167 (559)
T ss_pred             HHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccC
Confidence            9999999999999999999999999999999999865321     1110    0              0 0122222211


Q ss_pred             cccccCHHHHHHhh------------hhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEE
Q 039837          164 IESAINWSELIEAA------------DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLG  231 (544)
Q Consensus       164 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~  231 (544)
                      ......+.++....            ............+||||||.||+|.+||+++..++......+  ++..+++++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~--~~~~~d~~~~  245 (559)
T PRK08315        168 HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM--KLTEEDRLCI  245 (559)
T ss_pred             CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc--CCCCCceEEE
Confidence            22223344432211            011122234578899999999999999999998888777766  7788999999


Q ss_pred             ecchhHHHHHHHHHHhhHhccceEEE-cCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEe
Q 039837          232 LIPFFHIYGITGICCATLRNKGKVVM-MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTA  310 (544)
Q Consensus       232 ~~p~~~~~g~~~~~~~~l~~G~~~~~-~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~  310 (544)
                      .+|++|.+|+...++.++..|+++++ ...+++..+++.++++++|++.++|+++..++.........+++++.  ++++
T Consensus       246 ~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~--~~~~  323 (559)
T PRK08315        246 PVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRT--GIMA  323 (559)
T ss_pred             ecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhhe--eEec
Confidence            99999999988888999999999984 45678999999999999999999999999988776555556777666  9999


Q ss_pred             cCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceE
Q 039837          311 AAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGEL  390 (544)
Q Consensus       311 G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel  390 (544)
                      |++++.++++.+.+.++..++++.||+||++.+++......  .......++|+|++++.++++|++++++++.|+.|||
T Consensus       324 G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~--~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl  401 (559)
T PRK08315        324 GSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDD--PLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGEL  401 (559)
T ss_pred             CCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCccc--chhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEE
Confidence            99999999999999996667999999999987655433111  1223567899999999999999766999999999999


Q ss_pred             EEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEE
Q 039837          391 CVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV  470 (544)
Q Consensus       391 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  470 (544)
                      +|+|+.++.||++++..+...+..++||+|||+++++++|.++++||.+|+++++|.++++.+||++|.++++|.+++|+
T Consensus       402 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~  481 (559)
T PRK08315        402 CTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVV  481 (559)
T ss_pred             EEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEE
Confidence            99999999999999999988887889999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837          471 SLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM  542 (544)
Q Consensus       471 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~  542 (544)
                      +.+++..++.+++++++.++...+.+++.++++++++.+++|..+++++++|+|.+||++|.+|++++.+.+
T Consensus       482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~~~  553 (559)
T PRK08315        482 GVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEEL  553 (559)
T ss_pred             ecCCCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeHHHHHHHHHhhh
Confidence            999887788889999888776678889999999999999999999999999999999999999999886654

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-68  Score=547.52  Aligned_cols=476  Identities=23%  Similarity=0.331  Sum_probs=409.5

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF  115 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  115 (544)
                      |++.+.|.++|+++|+++|+.+.  +.++||.||.++++++|++|.+.|. +||+|+++++|+.+++++++||+++|+++
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~   77 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKEN--DRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTC   77 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecC--CcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEE
Confidence            57889999999999999999986  6899999999999999999999884 89999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhh------hcCCCCCCCCC
Q 039837          116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAAD------KAGNNFSNDDD  189 (544)
Q Consensus       116 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  189 (544)
                      +|+++.++.+++.++++.+++++++++......+......++..+.        +........      .........+.
T Consensus        78 v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~i~  149 (487)
T PRK07638         78 VPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEIDE--------WKRMIEKYLPTYAPIENVQNAPFYMG  149 (487)
T ss_pred             EecCccCCHHHHHHHHHhCCCCEEEEecccccchhhccceEEEehh--------hhhhhhhccccccccccCCCCcEEEE
Confidence            9999999999999999999999999988665544433333333221        111111000      01112224678


Q ss_pred             CCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHH
Q 039837          190 VKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDA  269 (544)
Q Consensus       190 ~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~  269 (544)
                      +||||||.||||+++|+++...+......+  ++..+|+++...|++|..++ ..++.++..|+++++.+.+++..+++.
T Consensus       150 ~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~--~~~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~~~~~~~~~~~~~  226 (487)
T PRK07638        150 FTSGSTGKPKAFLRAQQSWLHSFDCNVHDF--HMKREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHLMRKFIPNQVLDK  226 (487)
T ss_pred             eCCCCCCCCcEEEEecHHHHHHHHHHHHhc--CcCCCCEEEEeecchHHHHH-HHHHHHHccCcEEEEcCCCCHHHHHHH
Confidence            999999999999999999998887777666  67889999999999998876 677889999999999998999999999


Q ss_pred             HHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCC
Q 039837          270 LITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGD  349 (544)
Q Consensus       270 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~  349 (544)
                      ++++++|++.++|+++..|.+...   . ..+...  ++++|+.++.++.+++.+.+|++++++.||+||++.++.... 
T Consensus       227 i~~~~~t~~~~~P~~~~~l~~~~~---~-~~~~~~--~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-  299 (487)
T PRK07638        227 LETENISVMYTVPTMLESLYKENR---V-IENKMK--IISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVD-  299 (487)
T ss_pred             HHHcCCeEEEeCcHHHHHHHhCcC---c-CCceeE--EEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecc-
Confidence            999999999999999999987632   1 222223  788999999999999999998999999999999997655432 


Q ss_pred             CCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCC
Q 039837          350 PANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDD  429 (544)
Q Consensus       350 ~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~  429 (544)
                         ........++|+|++++.++|+| ++|.+++.|+.|||+++|+.++.||+++++.+...+ .+|||+|||+++++++
T Consensus       300 ---~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~~  374 (487)
T PRK07638        300 ---EESERRPNSVGRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDEE  374 (487)
T ss_pred             ---cccCCCCCCCCcccCCcEEEEEC-CCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcCC
Confidence               11334567899999999999999 678999999999999999999999999998876654 6899999999999999


Q ss_pred             CcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 039837          430 GDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATY  509 (544)
Q Consensus       430 g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~  509 (544)
                      |++++.||.+|+||++|.+|+|.+||+++.++|+|.+++|++.+++..|+.++++++.    ..+.+++.+++++.++.+
T Consensus       375 g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----~~~~~~l~~~~~~~l~~~  450 (487)
T PRK07638        375 GFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----SATKQQLKSFCLQRLSSF  450 (487)
T ss_pred             CeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----CCCHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999988888888888763    357789999999999999


Q ss_pred             CceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          510 KKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       510 ~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ++|..++++++||+|++||++|++|+++++++
T Consensus       451 ~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~  482 (487)
T PRK07638        451 KIPKEWHFVDEIPYTNSGKIARMEAKSWIENQ  482 (487)
T ss_pred             cCCcEEEEecccCCCCcccccHHHHHHHHhcc
Confidence            99999999999999999999999999988654

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.2e-68  Score=551.03  Aligned_cols=483  Identities=22%  Similarity=0.337  Sum_probs=408.7

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      ..++.+.|.++++++|+++|+++.  ++.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        42 ~~~~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  119 (537)
T PRK13382         42 GMGPTSGFAIAAQRCPDRPGLIDE--LGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGAD  119 (537)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEeC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcE
Confidence            358999999999999999999985  679999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC----C--CcEEEecccccccccCHHHHHHhhhh----cCCCC
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----G--LPIIVLGEERIESAINWSELIEAADK----AGNNF  184 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  184 (544)
                      ++|+++.++.+++.++++.++++++|++.+....+...    .  ...+.+.+..  ....++.+......    .....
T Consensus       120 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  197 (537)
T PRK13382        120 ILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDED--HDLTVEVLIAAHAGQRPEPTGRK  197 (537)
T ss_pred             EEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCc--ccccHHHHhhccCcCCCCCCCCC
Confidence            99999999999999999999999999987765544321    0  1112221111  11223333221110    11223


Q ss_pred             CCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHH
Q 039837          185 SNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELR  264 (544)
Q Consensus       185 ~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~  264 (544)
                      .....+||||||.||||+++|+++..........+  ....+++++...|++|.+|+ ..++.++..|+++++...+++.
T Consensus       198 ~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~--~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~g~~~~~~~~~~~~  274 (537)
T PRK13382        198 GRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT--PWRAEEPTVIVAPMFHAWGF-SQLVLAASLACTIVTRRRFDPE  274 (537)
T ss_pred             CeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh--CCCCCCeEEEecChHhhhHH-HHHHHHHhcCcEEEECCCcCHH
Confidence            34567899999999999999998888777666555  56778899999999999998 6778889999999998889999


Q ss_pred             HHHHHHHHcCceeeecchHHHHHHhcCCCC--CccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccc
Q 039837          265 AFLDALITHEVTFAPIVPPIILSLVKDPIV--DEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSC  342 (544)
Q Consensus       265 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~  342 (544)
                      .+++.++++++|++.++|+++..|++....  ...+.++++.  +++||+++++++++.|.+.+ +..+++.||+||++.
T Consensus       275 ~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~--i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~  351 (537)
T PRK13382        275 ATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRF--AAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEAGM  351 (537)
T ss_pred             HHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeE--EEEcCCCCCHHHHHHHHHHc-CCcEEecccccccCc
Confidence            999999999999999999999999875432  2234456666  99999999999999999999 678999999999987


Q ss_pred             cccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCc
Q 039837          343 ITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGD  422 (544)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD  422 (544)
                      ++....    .......+++|+|++++.++|+| +++++++.|+.|||+++|++++.||+  ++.+.. + .+|||+|||
T Consensus       352 ~~~~~~----~~~~~~~~~vG~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGD  422 (537)
T PRK13382        352 IATATP----ADLRAAPDTAGRPAEGTEIRILD-QDFREVPTGEVGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGD  422 (537)
T ss_pred             ceecCh----hHhccCCCCccccCcCcEEEEEC-CCCCCCCCCCeeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCc
Confidence            655332    11234567899999999999999 57899999999999999999999998  444443 3 478999999


Q ss_pred             eEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH
Q 039837          423 IGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV  502 (544)
Q Consensus       423 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l  502 (544)
                      +++++++|++++.||.+|+||++|++|++.+||+.|+++|+|.+++|++.+++..++.+++++++.++...+.+++++++
T Consensus       423 l~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l  502 (537)
T PRK13382        423 VGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHV  502 (537)
T ss_pred             eEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988888899999998877667789999999


Q ss_pred             HhcccCCCceeEEEEeecCCCCCCcccchHHHHH
Q 039837          503 ASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD  536 (544)
Q Consensus       503 ~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~  536 (544)
                      +++|+.+++|..+++++++|+|++||++|++|++
T Consensus       503 ~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~  536 (537)
T PRK13382        503 RDNLANYKVPRDIVVLDELPRGATGKILRRELQA  536 (537)
T ss_pred             HHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence            9999999999999999999999999999999864

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-68  Score=552.70  Aligned_cols=505  Identities=23%  Similarity=0.351  Sum_probs=417.2

Q ss_pred             CCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHH
Q 039837           28 PAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALG  107 (544)
Q Consensus        28 ~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA  107 (544)
                      .+.+.+...|+.+.|.++|+++|+++|+++..+.+.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus         8 ~~~~~~~~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA   87 (534)
T PRK05852          8 APMASDFGPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLA   87 (534)
T ss_pred             cchhhhhcccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            34455666789999999999999999998764456899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC---CcE-EEecccc--cccccC--HHHHHH----
Q 039837          108 IMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG---LPI-IVLGEER--IESAIN--WSELIE----  175 (544)
Q Consensus       108 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~-~~~~~~~--~~~~~~--~~~~~~----  175 (544)
                      |+++|++++++++.++.+++.++++.++++++|++...........   ... +.+....  ......  +.....    
T Consensus        88 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (534)
T PRK05852         88 ASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPA  167 (534)
T ss_pred             HHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccccccccccccccccccCCCcc
Confidence            9999999999999999999999999999999998765332211110   011 1111000  000000  000000    


Q ss_pred             -hhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccce
Q 039837          176 -AADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGK  254 (544)
Q Consensus       176 -~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~  254 (544)
                       ..............+||||||.||||.++|+++.+.+......+  ++..++++++.+|++|.+|+...++.++..|++
T Consensus       168 ~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~  245 (534)
T PRK05852        168 TSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY--RLSPRDATVAVMPLYHGHGLIAALLATLASGGA  245 (534)
T ss_pred             ccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh--CCCCcceEEEecCcchhHHHHHHHHHHHhcCCe
Confidence             00000112234678999999999999999999999888777766  678899999999999999998889999999999


Q ss_pred             EEEcC--ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCC--ccCccccccccEEEecCCCCHhHHHHHHhhcCCCe
Q 039837          255 VVMMN--RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVD--EFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQ  330 (544)
Q Consensus       255 ~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~  330 (544)
                      +++..  .+++..+++.++++++|.++++|+++..|.+.....  ....++++.  ++++|+++++++++.+.+.+ ++.
T Consensus       246 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~--i~~~G~~~~~~~~~~~~~~~-~~~  322 (534)
T PRK05852        246 VLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRF--IRSCSAPLTAETAQALQTEF-AAP  322 (534)
T ss_pred             EEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeE--EEECCCCCCHHHHHHHHHHh-CCC
Confidence            88854  467889999999999999999999999998765422  223456666  99999999999999999998 899


Q ss_pred             EEecccCccccccccccCCCCC---CCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhh
Q 039837          331 VQEAYGLTEHSCITLTYGDPAN---PSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEE  407 (544)
Q Consensus       331 i~~~yG~tE~~~~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~  407 (544)
                      +++.||+||++..++.......   .......+..|. .++++++++| ++++++++|+.|||+++|+.+++||+++++.
T Consensus       323 v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~  400 (534)
T PRK05852        323 VVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVG-SDGLPLPAGAVGEVWLRGTTVVRGYLGDPTI  400 (534)
T ss_pred             hhhccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEEC-CCCCCCCCCCceEEEEecCcccchhcCCccc
Confidence            9999999999876654321100   001122334444 6999999999 5789999999999999999999999999999


Q ss_pred             hhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEe
Q 039837          408 TARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVM  487 (544)
Q Consensus       408 ~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  487 (544)
                      +...| .+|||+|||+|++|+||++++.||.+|+|+.+|.+++|.+||++|.++|+|.+++|++.++...++.++++++.
T Consensus       401 t~~~~-~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~  479 (534)
T PRK05852        401 TAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVP  479 (534)
T ss_pred             chhhh-cCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEE
Confidence            98888 67999999999999999999999999999999999999999999999999999999999988888899999998


Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          488 NPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       488 ~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      .+....+.+++.++++++|+.+++|..++++++||+|.+||++|++|+++|..
T Consensus       480 ~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~  532 (534)
T PRK05852        480 RESAPPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGH  532 (534)
T ss_pred             CCCCCCCHHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHHHHHHhcc
Confidence            77666788999999999999999999999999999999999999999998854

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.8e-68  Score=547.35  Aligned_cols=492  Identities=33%  Similarity=0.519  Sum_probs=426.1

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      ..++.+.|.+.++.+|+++|+.+.  ++++||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus         4 ~~~i~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~   81 (513)
T PRK07656          4 WMTLPELLARAARRFGDKEAYVFG--DQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAV   81 (513)
T ss_pred             cccHHHHHHHHHHHCCCCeEEEeC--CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeE
Confidence            468999999999999999999986  789999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-----CCcEEE-ecccccc----cccCHHHHHHhhhh-----
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-----GLPIIV-LGEERIE----SAINWSELIEAADK-----  179 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~~~~-~~~~~~~----~~~~~~~~~~~~~~-----  179 (544)
                      ++|+++..+.+.+..++++++++++++++.........     ....+. .......    ....++.+......     
T Consensus        82 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (513)
T PRK07656         82 VVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERAP  161 (513)
T ss_pred             EEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhcCCCCCCcC
Confidence            99999999999999999999999999988765543321     122222 2111111    11344544432111     


Q ss_pred             -cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEc
Q 039837          180 -AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM  258 (544)
Q Consensus       180 -~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~  258 (544)
                       ........+.+||||||.||+|.+||+++.+.+......+  ++..+++++..+|++|.+++...++.++..|+++++.
T Consensus       162 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~  239 (513)
T PRK07656        162 EVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL--GLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL  239 (513)
T ss_pred             CCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh--CCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec
Confidence             1112234567899999999999999999998887777666  7788999999999999999888889999999999998


Q ss_pred             CccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCC-eEEecccC
Q 039837          259 NRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGV-QVQEAYGL  337 (544)
Q Consensus       259 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~-~i~~~yG~  337 (544)
                      +..++..+++.++++++|++.++|+++..|.+........+++++.  +++||+++++++.+.|.+.+ ++ .+++.||+
T Consensus       240 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~--v~~~g~~~~~~~~~~~~~~~-~~~~~~~~YG~  316 (513)
T PRK07656        240 PVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRL--AVTGAASMPVALLERFESEL-GVDIVLTGYGL  316 (513)
T ss_pred             CcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceee--EEecCCCCCHHHHHHHHHHc-CCCceEeEEcc
Confidence            8889999999999999999999999999999887666666777777  99999999999999999998 56 89999999


Q ss_pred             ccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCe
Q 039837          338 TEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGW  417 (544)
Q Consensus       338 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~  417 (544)
                      ||+++++..+.....  .....+++|.|+++++++++| +++.+++.|+.|||+++|+.++.||++++..+...+..++|
T Consensus       317 tE~~~~~~~~~~~~~--~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~  393 (513)
T PRK07656        317 SEASGVTTFNRLDDD--RKTVAGTIGTAIAGVENKIVN-ELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGW  393 (513)
T ss_pred             ccCCCceeecCcccc--ccccCCCccccCCCcEEEEEC-CCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCc
Confidence            999877665431111  112257899999999999999 57899999999999999999999999999999888867899


Q ss_pred             eecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHH
Q 039837          418 LHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDD  497 (544)
Q Consensus       418 ~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  497 (544)
                      |+|||+|+++++|.+++.||.+|+++++|.++++.+||++|.++++|.+++|++.++...|+.++++++..++...+.++
T Consensus       394 ~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~  473 (513)
T PRK07656        394 LHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEE  473 (513)
T ss_pred             eeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999998888888899999987766778899


Q ss_pred             HHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHH
Q 039837          498 IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD  536 (544)
Q Consensus       498 l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~  536 (544)
                      +.++++++|+++++|..++++++||+|++||++|++|++
T Consensus       474 l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~  512 (513)
T PRK07656        474 LIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE  512 (513)
T ss_pred             HHHHHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence            999999999999999999999999999999999999875

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.1e-68  Score=545.55  Aligned_cols=483  Identities=24%  Similarity=0.365  Sum_probs=418.6

Q ss_pred             CHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837           37 TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRS-LGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF  115 (544)
Q Consensus        37 ~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  115 (544)
                      .+.+.|+++|+.+|+++|+++.  ++.+||+||.++++++|++|++ .|+++||+|+++++|+++++++++||+++|+++
T Consensus         3 ~~~~~~~~~a~~~p~~~a~~~~--~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~   80 (496)
T PRK06839          3 GIAYWIEKRAYLHPDRIAIITE--EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIA   80 (496)
T ss_pred             cHHHHHHHHHHHCCCCeEEEEC--CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            5788999999999999999986  7899999999999999999985 699999999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-----CcEEEecccccccccCHHHHHHhh----hhcCCCCCC
Q 039837          116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----LPIIVLGEERIESAINWSELIEAA----DKAGNNFSN  186 (544)
Q Consensus       116 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  186 (544)
                      +|+++.++.+++..+++.+++++++++++....+.+..     ...+.+.+        +.......    .........
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  152 (496)
T PRK06839         81 VPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITS--------LKEIEDRKIDNFVEKNESASF  152 (496)
T ss_pred             EecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEecc--------hHhhhccCCCCCCCCCCCCcE
Confidence            99999999999999999999999999987765544322     11222211        11111110    011112234


Q ss_pred             CCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHH
Q 039837          187 DDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAF  266 (544)
Q Consensus       187 ~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~  266 (544)
                      .+.+||||||.||+|.+||+++..........+  ....+++++..+|++|.+|+...++.++..|+++++.+.+++..+
T Consensus       153 ~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~  230 (496)
T PRK06839        153 IICYTSGTTGKPKGAVLTQENMFWNALNNTFAI--DLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKA  230 (496)
T ss_pred             EEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc--CCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHH
Confidence            667899999999999999999877665555555  677889999999999999987777889999999999888999999


Q ss_pred             HHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccc
Q 039837          267 LDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLT  346 (544)
Q Consensus       267 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~  346 (544)
                      ++.++++++|++.++|+++..|++.......++++++.  +++||+++++++.+.+.+.  ++++++.||+||++..+..
T Consensus       231 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~  306 (496)
T PRK06839        231 LSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRW--FYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFM  306 (496)
T ss_pred             HHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccce--EEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCCcceEe
Confidence            99999999999999999999999876655566777777  9999999999999999886  8999999999999875543


Q ss_pred             cCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEE
Q 039837          347 YGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYI  426 (544)
Q Consensus       347 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~  426 (544)
                      ...   .......+++|+|+++++++|+| +++..++.|+.|||+|+|+.++.||+++++.+...+ .+|||+|||++++
T Consensus       307 ~~~---~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~  381 (496)
T PRK06839        307 LSE---EDARRKVGSIGKPVLFCDYELID-ENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARV  381 (496)
T ss_pred             ccc---ccccccCCCCcccCCCceEEEEC-CCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEE
Confidence            321   11234567899999999999999 466779999999999999999999999999988777 6899999999999


Q ss_pred             cCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcc
Q 039837          427 DDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNV  506 (544)
Q Consensus       427 ~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l  506 (544)
                      +++|.+++.||.+|+|+.+|.+|+|.+||++|.++|+|.+++|++.+++..++.+++++++.++...+.+++++++++.|
T Consensus       382 ~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l  461 (496)
T PRK06839        382 DEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFL  461 (496)
T ss_pred             cCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999988889999999998877778899999999999


Q ss_pred             cCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          507 ATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       507 ~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      +.+++|..+++++++|+|.+||++|++|+++.++
T Consensus       462 ~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~  495 (496)
T PRK06839        462 AKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS  495 (496)
T ss_pred             cCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence            9999999999999999999999999999987753

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-67  Score=556.99  Aligned_cols=498  Identities=24%  Similarity=0.339  Sum_probs=407.9

Q ss_pred             CCH-HHHHHhhhhhcCCceEEEEcc----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHH
Q 039837           36 VTL-PDFVLQDAELYADKVAFVEAV----SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA  110 (544)
Q Consensus        36 ~~l-~~~l~~~a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~  110 (544)
                      .|+ ...|.++++.+|+++|+++..    +.+++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||++
T Consensus        66 ~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  145 (637)
T PRK00174         66 LNVSYNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACAR  145 (637)
T ss_pred             eEHHHHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            344 355777888899999998642    235899999999999999999999999999999999999999999999999


Q ss_pred             hcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHH---------Hhh----cC-CCcEE-Eeccccc------ccccC
Q 039837          111 AGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYE---------KVK----GL-GLPII-VLGEERI------ESAIN  169 (544)
Q Consensus       111 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~----~~-~~~~~-~~~~~~~------~~~~~  169 (544)
                      +|++++|+++.++.+++.++++.++++++|+++....         .+.    .. ..+.+ .++....      .....
T Consensus       146 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (637)
T PRK00174        146 IGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLW  225 (637)
T ss_pred             cCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCcCCCCccc
Confidence            9999999999999999999999999999999765321         111    11 12222 2221110      01122


Q ss_pred             HHHHHHhhhh------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHh-hccccCCcccCccEEEEecchhHHHHHH
Q 039837          170 WSELIEAADK------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCS-TLFSVVPEMIGQVTTLGLIPFFHIYGIT  242 (544)
Q Consensus       170 ~~~~~~~~~~------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~g~~  242 (544)
                      +.++......      ........+.+||||||.||||+++|++++..... ....+  ++..+++++...|++|..++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~  303 (637)
T PRK00174        226 WHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF--DYKDGDVYWCTADVGWVTGHS  303 (637)
T ss_pred             HHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc--CCCCCcEEEEcCCchHhhhhH
Confidence            3443322111      11123345789999999999999999998755433 22333  667889999999999999887


Q ss_pred             HHHHhhHhccceEEEcCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCC--CccCccccccccEEEecCCCCH
Q 039837          243 GICCATLRNKGKVVMMNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPIV--DEFDLSKLQLRAVMTAAAPLAP  316 (544)
Q Consensus       243 ~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~v~~~G~~~~~  316 (544)
                      ..++.++..|+++++.+.    .++..+++.++++++|++.++|+++..|++....  ...+++++|.  ++++|+++++
T Consensus       304 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~--i~~~Ge~l~~  381 (637)
T PRK00174        304 YIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRL--LGSVGEPINP  381 (637)
T ss_pred             HHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeE--EEEeCCCCCH
Confidence            788999999999998753    4789999999999999999999999999876532  2345677777  9999999999


Q ss_pred             hHHHHHHhhcC--CCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEec
Q 039837          317 DLLSSFEKKFP--GVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRS  394 (544)
Q Consensus       317 ~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~  394 (544)
                      ++++++.+.++  ++++++.||+||++..+..... .  ......+++|+|++|++++|+| ++|++++.|+.|||+++|
T Consensus       382 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~-~--~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel~v~g  457 (637)
T PRK00174        382 EAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLP-G--ATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIKD  457 (637)
T ss_pred             HHHHHHHHHhCCCCCceEecccccccCCceEecCC-C--CCCcCCCcccCCCCCceEEEEC-CCCCCCCCCCcEEEEEcC
Confidence            99999998874  3789999999999876543221 0  0223457899999999999999 689999999999999999


Q ss_pred             --ccccccccCChhhhhccc--CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEE
Q 039837          395 --QCVMQGYYNNEEETARTI--DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV  470 (544)
Q Consensus       395 --~~~~~gy~~~~~~~~~~~--~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  470 (544)
                        |+++.|||++++.+...+  ..+|||+|||+|+++++|++++.||.||+||++|++|+|.+||++|.++|+|.+++|+
T Consensus       458 ~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vv  537 (637)
T PRK00174        458 PWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVV  537 (637)
T ss_pred             CCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEE
Confidence              689999999998877654  3478999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCceeEEEEEeCCCCCCC---HHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          471 SLPDEEAGEIPAACVVMNPNAKES---EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       471 ~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      +.+++..|+.+++++++.++...+   .++|.++++++|+.+++|..++++++||+|.+||++|+.|++.+.++
T Consensus       538 g~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  611 (637)
T PRK00174        538 GRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGE  611 (637)
T ss_pred             eeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence            999988899999999988765544   46899999999999999999999999999999999999999987543

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.2e-67  Score=548.32  Aligned_cols=502  Identities=28%  Similarity=0.453  Sum_probs=426.8

Q ss_pred             CCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           34 ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        34 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      ...|+.+.|.+.++++|+++|+++...++.+||+||.+++.++|.+|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        16 ~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~   95 (558)
T PRK12583         16 LTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGA   95 (558)
T ss_pred             ccCcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCC
Confidence            34589999999999999999998865568999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccchH-----HHhhcC---------------C---C-cEEEecccccccccC
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIY-----EKVKGL---------------G---L-PIIVLGEERIESAIN  169 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~---------------~---~-~~~~~~~~~~~~~~~  169 (544)
                      +++++++.++.+++..+++.++++++++++...     ..+...               .   . ..+..+.........
T Consensus        96 ~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (558)
T PRK12583         96 ILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLA  175 (558)
T ss_pred             EEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCCccccc
Confidence            999999999999999999999999999875421     111100               0   0 111111111112223


Q ss_pred             HHHHHHhhh------------hcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhH
Q 039837          170 WSELIEAAD------------KAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFH  237 (544)
Q Consensus       170 ~~~~~~~~~------------~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  237 (544)
                      |+.......            ...........+||||||.||+|.+||+++.+.+......+  ++..+++++..+|++|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~--~~~~~d~~~~~~p~~~  253 (558)
T PRK12583        176 WHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL--GLTEHDRLCVPVPLYH  253 (558)
T ss_pred             hHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh--CCCCCCeEEEecCchh
Confidence            333322110            01122233568999999999999999999998888777666  7788899999999999


Q ss_pred             HHHHHHHHHhhHhccceEEEcC-ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCH
Q 039837          238 IYGITGICCATLRNKGKVVMMN-RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAP  316 (544)
Q Consensus       238 ~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~  316 (544)
                      .+|....++.++..|+++++.. .+++..+++.++++++|++.++|+++..+++.......++++++.  +++||+++++
T Consensus       254 ~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~--i~~~G~~~~~  331 (558)
T PRK12583        254 CFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRT--GIMAGAPCPI  331 (558)
T ss_pred             hhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheE--EEecCCCCCH
Confidence            9999888999999999998653 578999999999999999999999999888766555556777777  9999999999


Q ss_pred             hHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEeccc
Q 039837          317 DLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQC  396 (544)
Q Consensus       317 ~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~  396 (544)
                      ++.+++.+.+++..+++.||+||++.++......  ........++|+|++++.++|+|++ +.+++.|+.|||+++|+.
T Consensus       332 ~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~--~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~g~~  408 (558)
T PRK12583        332 EVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAA--DDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYS  408 (558)
T ss_pred             HHHHHHHHHcCCcceeccccccccccceeccCcc--cccccccCCCCccCCCCeEEEECCC-CCCCCCCCeeEEEEEeCc
Confidence            9999999998667899999999999876544311  1123356789999999999999964 899999999999999999


Q ss_pred             ccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCC
Q 039837          397 VMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEE  476 (544)
Q Consensus       397 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~  476 (544)
                      ++.||++++..+...++.++||+|||+|+++++|++++.||.+|+|+++|.+|+|.+||++|.++|+|.+++|+++++..
T Consensus       409 ~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~  488 (558)
T PRK12583        409 VMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEK  488 (558)
T ss_pred             cchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCC
Confidence            99999999999988887889999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837          477 AGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM  542 (544)
Q Consensus       477 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~  542 (544)
                      .++.++++++..++...+.+++.++++++|+++++|..+++++++|+|.+||++|++|+++..+++
T Consensus       489 ~~~~~~~~v~~~~~~~~~~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~~~~~~  554 (558)
T PRK12583        489 YGEEIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIEEL  554 (558)
T ss_pred             CCcEEEEEEEECCCCCCCHHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHHHHHHHHhhc
Confidence            788899999988776677899999999999999999999999999999999999999999987765

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-67  Score=551.30  Aligned_cols=494  Identities=26%  Similarity=0.427  Sum_probs=415.9

Q ss_pred             CCCHH-HHHHhhhh-hcCCceEEEEcc--CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHH
Q 039837           35 NVTLP-DFVLQDAE-LYADKVAFVEAV--SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA  110 (544)
Q Consensus        35 ~~~l~-~~l~~~a~-~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~  110 (544)
                      ..|+. +.+.++|. .+|+++|+.+..  ..+++||+||.++++++|.+|.+.|+++||+|+++++|++++++++|||++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~  120 (570)
T PRK04319         41 KVNIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALK  120 (570)
T ss_pred             ceeHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            34444 67777776 589999998642  236899999999999999999999999999999999999999999999999


Q ss_pred             hcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC---Cc-EEEecccc--cccccCHHHHHHhhhh-----
Q 039837          111 AGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG---LP-IIVLGEER--IESAINWSELIEAADK-----  179 (544)
Q Consensus       111 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~-~~~~~~~~--~~~~~~~~~~~~~~~~-----  179 (544)
                      +|++++|+++.++.+++.++++.+++++++++...........   .. .+.++...  ......+.+.......     
T Consensus       121 ~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (570)
T PRK04319        121 NGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDEFDIE  200 (570)
T ss_pred             cCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchhcCCCceEEEEECCCcCCCcCccCHHHHHhhcCCcCCcc
Confidence            9999999999999999999999999999999877654432111   12 22232211  1122345444332111     


Q ss_pred             -cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEc
Q 039837          180 -AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM  258 (544)
Q Consensus       180 -~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~  258 (544)
                       ..........+||||||.||||++||+++.+.+......+  ++..++++++..|++|.+|+...++.++..|+++++.
T Consensus       201 ~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~  278 (570)
T PRK04319        201 WTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL--DLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVID  278 (570)
T ss_pred             ccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc--CCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEE
Confidence             1122344667999999999999999999998877766666  6778899999999999998878889999999999887


Q ss_pred             C-ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCC--CCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecc
Q 039837          259 N-RFELRAFLDALITHEVTFAPIVPPIILSLVKDPI--VDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAY  335 (544)
Q Consensus       259 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  335 (544)
                      . .+++..+++.++++++|++.++|+++..|++...  ....++++++.  ++++|+++++++.+++.+.+ +.++++.|
T Consensus       279 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~--~~~gG~~l~~~~~~~~~~~~-g~~i~~~Y  355 (570)
T PRK04319        279 GGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRH--ILSVGEPLNPEVVRWGMKVF-GLPIHDNW  355 (570)
T ss_pred             CCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceE--EEEcccCCCHHHHHHHHHHh-CCCeEece
Confidence            5 5789999999999999999999999999987543  22345677777  99999999999999999988 78999999


Q ss_pred             cCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEec--ccccccccCChhhhhcccC
Q 039837          336 GLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRS--QCVMQGYYNNEEETARTID  413 (544)
Q Consensus       336 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~  413 (544)
                      |+||++..+....    .......+++|+|+++++++|+| +++.+++.|+.|||+++|  +.++.|||++++.+.+.|.
T Consensus       356 G~tE~~~~~~~~~----~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~  430 (570)
T PRK04319        356 WMTETGGIMIANY----PAMDIKPGSMGKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA  430 (570)
T ss_pred             eecccCCEEEecC----CCCCCCCCcCcCCCCCCEEEEEC-CCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhc
Confidence            9999987654322    11234567899999999999999 678888999999999997  8999999999999998884


Q ss_pred             CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCC
Q 039837          414 KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKE  493 (544)
Q Consensus       414 ~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  493 (544)
                       +|||+|||+++++++|++++.||.+|+|+++|++|+|.+||++|.++|.|.+++|++.+++..++.+++++++.++...
T Consensus       431 -~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~  509 (570)
T PRK04319        431 -GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEP  509 (570)
T ss_pred             -CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCC
Confidence             8999999999999999999999999999999999999999999999999999999999998889999999998876544


Q ss_pred             CH---HHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          494 SE---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       494 ~~---~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      +.   +++.++++++|+.+++|..++++++||+|++||++|++|+++..
T Consensus       510 ~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~  558 (570)
T PRK04319        510 SEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWEL  558 (570)
T ss_pred             CHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHh
Confidence            33   58899999999999999999999999999999999999999864

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-67  Score=546.62  Aligned_cols=500  Identities=27%  Similarity=0.423  Sum_probs=431.9

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG  112 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G  112 (544)
                      ....|+.++|...|+.+|+++|+.+.  ++.+||+||.+++.++|+.|.+.|+++||+|+++++|+.+++++++||+++|
T Consensus         8 ~~~~~l~~~l~~~a~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G   85 (523)
T PRK08316          8 ARRQTIGDILRRSARRYPDKTALVFG--DRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAG   85 (523)
T ss_pred             ccCCCHHHHHHHHHHHCCCCeEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence            34568999999999999999999986  6899999999999999999999999999999999999999999999999999


Q ss_pred             CeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC----CcEEEecc-----cccccccCHHHHHHhhh-----
Q 039837          113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG----LPIIVLGE-----ERIESAINWSELIEAAD-----  178 (544)
Q Consensus       113 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~-----  178 (544)
                      ++++|+++..+.+++..+++.+++++++++.+....+....    ........     ........+........     
T Consensus        86 ~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (523)
T PRK08316         86 AVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFADWAEAGSVAEPD  165 (523)
T ss_pred             cEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHHHHhcCCCccCc
Confidence            99999999999999999999999999999988766554321    11111100     01111223333322111     


Q ss_pred             -hcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEE
Q 039837          179 -KAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVM  257 (544)
Q Consensus       179 -~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~  257 (544)
                       ...........+||||||.||+|.+||+++..........+  ++..+++++..+|++|.+++...++.++..|+++++
T Consensus       166 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~  243 (523)
T PRK08316        166 VELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG--DMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVI  243 (523)
T ss_pred             cCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh--CCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEE
Confidence             11122234567899999999999999999998877766666  678899999999999999987677788999999999


Q ss_pred             cCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccC
Q 039837          258 MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGL  337 (544)
Q Consensus       258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  337 (544)
                      .+..++..+++.++++++|++.++|+++..|++.......++++++.  +++||+.++.++.+.+.+.+++.++++.||+
T Consensus       244 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~  321 (523)
T PRK08316        244 LDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRK--GYYGASIMPVEVLKELRERLPGLRFYNCYGQ  321 (523)
T ss_pred             ecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceE--EEEcCCcCCHHHHHHHHHHcCCCceeeeecc
Confidence            98889999999999999999999999999999877655666777777  9999999999999999999988999999999


Q ss_pred             ccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCe
Q 039837          338 TEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGW  417 (544)
Q Consensus       338 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~  417 (544)
                      ||++.+.......   ......+++|+|+++++++|+| +++++++.|+.|||+++|+.++.||+++++.+...| .++|
T Consensus       322 tE~~~~~~~~~~~---~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~  396 (523)
T PRK08316        322 TEIAPLATVLGPE---EHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGW  396 (523)
T ss_pred             cccCccccccCcc---ccccccCCcccCCCCcEEEEEc-CCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh-hCCC
Confidence            9998766554311   1224457899999999999999 678999999999999999999999999999998888 6899


Q ss_pred             eecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHH
Q 039837          418 LHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDD  497 (544)
Q Consensus       418 ~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  497 (544)
                      |+|||+|+++++|.+++.||.+|+|+++|.+++|.+||+.|+++++|.+++|++.+++..++.++++++..++...+.++
T Consensus       397 ~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  476 (523)
T PRK08316        397 FHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDE  476 (523)
T ss_pred             eeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999888888999999988776677889


Q ss_pred             HHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhhh
Q 039837          498 IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR  543 (544)
Q Consensus       498 l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~~  543 (544)
                      +.++++++++++++|..+++++++|+|++||++|++|+++|.+.++
T Consensus       477 l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~~~  522 (523)
T PRK08316        477 LIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGAFT  522 (523)
T ss_pred             HHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999988775

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=5.2e-68  Score=558.43  Aligned_cols=499  Identities=19%  Similarity=0.250  Sum_probs=390.8

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEcc-----CC--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHH
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEAV-----SG--KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA  105 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~  105 (544)
                      +...|+.++|.++++++|+++|+.+..     .+  ..+||+||.++++++|++|++.|+++||+|+++++|+++|++++
T Consensus        42 ~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~  121 (666)
T PLN02614         42 EGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISM  121 (666)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            344599999999999999999997421     11  35899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC------Cc-EEEeccccc----------cccc
Q 039837          106 LGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG------LP-IIVLGEERI----------ESAI  168 (544)
Q Consensus       106 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~------~~-~~~~~~~~~----------~~~~  168 (544)
                      +||+++|+++||+++.++.+++.+++++++++++|++.+....+....      ++ ++.++....          ....
T Consensus       122 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~  201 (666)
T PLN02614        122 EACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIY  201 (666)
T ss_pred             HHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEE
Confidence            999999999999999999999999999999999999876554442211      22 233321100          0123


Q ss_pred             CHHHHHHhhhh-------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccC---CcccCccEEEEecchhHH
Q 039837          169 NWSELIEAADK-------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV---PEMIGQVTTLGLIPFFHI  238 (544)
Q Consensus       169 ~~~~~~~~~~~-------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~  238 (544)
                      .++++......       ........+.|||||||.||||++||+++.+.+......+.   ..+..+|++++++|++|.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~  281 (666)
T PLN02614        202 AWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHI  281 (666)
T ss_pred             EHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHH
Confidence            45554432111       11223345689999999999999999999987765543321   145788999999999999


Q ss_pred             HHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCC----C-------------------
Q 039837          239 YGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIV----D-------------------  295 (544)
Q Consensus       239 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~-------------------  295 (544)
                      ++.. ..+.++..|+++++.+ .++..+++.++++++|+++++|+++..+.+....    .                   
T Consensus       282 ~~~~-~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  359 (666)
T PLN02614        282 FDRV-IEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNM  359 (666)
T ss_pred             HHHH-HHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            9984 4566778999998875 5889999999999999999999999887642100    0                   


Q ss_pred             --------cc-------------Cc-cccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCC
Q 039837          296 --------EF-------------DL-SKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANP  353 (544)
Q Consensus       296 --------~~-------------~~-~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~  353 (544)
                              ..             .+ +++++  +++||+++++++ ++|.+.++++.+++.||+||++...+...    +
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~--~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~----~  432 (666)
T PLN02614        360 KKGQSHVEASPLCDKLVFNKVKQGLGGNVRI--ILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSL----P  432 (666)
T ss_pred             HcCCCCcccchHHHHHHHHHHHHHhCCcEEE--EEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeec----c
Confidence                    00             01 34555  999999999875 66777775689999999999876543322    1


Q ss_pred             CCCCCCCcccccCCCceEEEEeC-C-CCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCc
Q 039837          354 SAGSKKNSVGFILPNLEVKFINP-E-TGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGD  431 (544)
Q Consensus       354 ~~~~~~~~~G~~~~~~~~~i~d~-~-~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  431 (544)
                      ......+++|+|+|+++++|+|. + .+.+++.|+.|||+|+||+++.|||++|+.|.+.| .+|||+|||+|++|+||+
T Consensus       433 ~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~  511 (666)
T PLN02614        433 DELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL-IDGWLHTGDVGEWQPNGS  511 (666)
T ss_pred             ccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhh-ccCCcccceEEEEcCCCC
Confidence            11234679999999999999983 3 24678999999999999999999999999999998 589999999999999999


Q ss_pred             EEEEeecCCceee-cceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCC----------CCCH-----
Q 039837          432 IFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA----------KESE-----  495 (544)
Q Consensus       432 ~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~~~~-----  495 (544)
                      +++.||.+|+||+ +|++|+|.+||++|.+||.|.+++|++.+..   ..++|++++....          ..+.     
T Consensus       512 l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~---~~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~  588 (666)
T PLN02614        512 MKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFE---SFLVAIANPNQQILERWAAENGVSGDYNALCQ  588 (666)
T ss_pred             EEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEeCCHHHHHHHHHhcCCCcCHHHHhc
Confidence            9999999999997 7999999999999999999999999987633   3688888875421          0011     


Q ss_pred             -----HHHHHHH-----HhcccCCCceeEEEEeec-C-----CCCCCcccchHHHHHHHHHhhhC
Q 039837          496 -----DDIMDFV-----ASNVATYKKVRVLHFVDG-I-----PKSHSGKIMRRILKDKMLEKMRK  544 (544)
Q Consensus       496 -----~~l~~~l-----~~~l~~~~~p~~~~~~~~-~-----P~t~~GKi~r~~l~~~~~~~~~~  544 (544)
                           +.+.+.+     ++.|+.+.+++.|+.+.+ |     .+|+++|++|..+.+.|+++|++
T Consensus       589 ~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~  653 (666)
T PLN02614        589 NEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDE  653 (666)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHH
Confidence                 1222322     345999999999988743 2     48999999999999999999863

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=3.8e-67  Score=543.17  Aligned_cols=488  Identities=25%  Similarity=0.394  Sum_probs=416.7

Q ss_pred             CCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           34 ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        34 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      ...|+.++|+++|+.+|+++|+++.  ++.+||+||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus        19 ~~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~   96 (542)
T PRK06155         19 SERTLPAMLARQAERYPDRPLLVFG--GTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGA   96 (542)
T ss_pred             cccCHHHHHHHHHHHCCCCeEEEeC--CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCC
Confidence            4568999999999999999999986  68999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-----C-cEEEecccccc-cccCHHH--HHHhh-----hh
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----L-PIIVLGEERIE-SAINWSE--LIEAA-----DK  179 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~-~~~~~~~~~~~-~~~~~~~--~~~~~-----~~  179 (544)
                      +++|+++.++.+++..+++.+++++++++.+....+....     . ..+.++..... ....+..  .....     ..
T Consensus        97 ~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (542)
T PRK06155         97 IAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAAA  176 (542)
T ss_pred             EEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchhhhcccCCCCCCCC
Confidence            9999999999999999999999999999987766654432     1 22333321110 0001110  00000     00


Q ss_pred             cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcC
Q 039837          180 AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN  259 (544)
Q Consensus       180 ~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~  259 (544)
                      ........+.+||||||.||+|+++|+++..........+  ++..++++++.+|++|..++ ..++.++..|+++++.+
T Consensus       177 ~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~--~~~~~~~~l~~~pl~~~~~~-~~~~~~l~~G~~~~~~~  253 (542)
T PRK06155        177 VQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL--EIGADDVLYTTLPLFHTNAL-NAFFQALLAGATYVLEP  253 (542)
T ss_pred             CCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc--CCCCCCEEEEecCHHHHHHH-HHHHHHHHcCceEEeeC
Confidence            1122334578899999999999999999988776666666  77889999999999999988 45689999999999998


Q ss_pred             ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcc
Q 039837          260 RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE  339 (544)
Q Consensus       260 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE  339 (544)
                      .+++..+++.++++++|++.++|+++..|.+.........++++.  ++.+|  +++++.+.+.+.+ ++++++.||+||
T Consensus       254 ~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~--~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~tE  328 (542)
T PRK06155        254 RFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRV--ALGPG--VPAALHAAFRERF-GVDLLDGYGSTE  328 (542)
T ss_pred             CCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEE--EEEcC--CCHHHHHHHHHHc-CCCEEeeecccc
Confidence            889999999999999999999999999998876555445555555  66555  6788999999988 899999999999


Q ss_pred             ccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecc---cccccccCChhhhhcccCCCC
Q 039837          340 HSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQ---CVMQGYYNNEEETARTIDKNG  416 (544)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~~~  416 (544)
                      ++.++....      .....+++|.+.++++++|+| +++++++.|+.|||+++|+   +++.||+++++.+...| .++
T Consensus       329 ~~~~~~~~~------~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~  400 (542)
T PRK06155        329 TNFVIAVTH------GSQRPGSMGRLAPGFEARVVD-EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNL  400 (542)
T ss_pred             cCccccCCC------CCCCCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh-cCC
Confidence            987665432      234567899999999999999 5789999999999999998   69999999999998887 689


Q ss_pred             eeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 039837          417 WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED  496 (544)
Q Consensus       417 ~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  496 (544)
                      ||+|||+|+++++|++++.||.+|+|+++|.+++|.+||++|.++|+|.+++|+++++...++.+.+++++.++...+..
T Consensus       401 ~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~  480 (542)
T PRK06155        401 WFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPV  480 (542)
T ss_pred             cEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999988778888888888877777889


Q ss_pred             HHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       497 ~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      +++++++++++.+++|..+++++++|+|.+||++|++|++++.
T Consensus       481 ~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~  523 (542)
T PRK06155        481 ALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGV  523 (542)
T ss_pred             HHHHHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhcc
Confidence            9999999999999999999999999999999999999999764

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.1e-68  Score=564.44  Aligned_cols=476  Identities=20%  Similarity=0.292  Sum_probs=401.1

Q ss_pred             CCHHHHHHhhhhh--cCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           36 VTLPDFVLQDAEL--YADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        36 ~~l~~~l~~~a~~--~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      .|+.++|.++|..  +||++|+.+.   ..+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~---~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~   80 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA---DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGV   80 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec---CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence            4889999998886  7999999864   4799999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhh----hhcCCCCCCCCC
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAA----DKAGNNFSNDDD  189 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  189 (544)
                      +++|++|.++.+++.+++++++++++|++......+....  ...... .      +.......    ........+++.
T Consensus        81 ~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~-~------~~~~~~~~~~~~~~~~~~~~a~il  151 (705)
T PRK06060         81 MAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPSR--VAEAAE-L------MSEAARVAPGGYEPMGGDALAYAT  151 (705)
T ss_pred             EEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcccc--cchhhh-h------hhhccccCCCCCCCCCCCCeEEEE
Confidence            9999999999999999999999999999876554432211  000000 0      00000000    001112334678


Q ss_pred             CCCCCCcCcceeeccHHHHHHHHHhhc-cccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcC-ccCHHHHH
Q 039837          190 VKQTDLWISKGVMLTHRNLVANLCSTL-FSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN-RFELRAFL  267 (544)
Q Consensus       190 ~tsgttG~PKgV~~t~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~  267 (544)
                      +||||||.||||+++|+++.+.+.... ..+  ++...++++...|++|.+++...++.++..|+++++.+ .+++..+.
T Consensus       152 ~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~  229 (705)
T PRK06060        152 YTSGTTGPPKAAIHRHADPLTFVDAMCRKAL--RLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAA  229 (705)
T ss_pred             ECCCCCCCCcEEEEccccHHHHHHHHHHHhh--CCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHH
Confidence            999999999999999999988776543 234  66788999999999999888677888999999999876 46788889


Q ss_pred             HHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcccccccccc
Q 039837          268 DALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTY  347 (544)
Q Consensus       268 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~  347 (544)
                      ..+.++++|+++++|+++..+++...  ...+++++.  +++||+++++++.++|.+.|++++++|.||+||++..+...
T Consensus       230 ~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~--i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  305 (705)
T PRK06060        230 ILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRC--VVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSN  305 (705)
T ss_pred             HHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeE--EEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEec
Confidence            99999999999999999999987543  234566666  99999999999999999999789999999999998655432


Q ss_pred             CCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEc
Q 039837          348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYID  427 (544)
Q Consensus       348 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~  427 (544)
                      .     ......+++|+|+++++++|+| +++++++.|+.|||+|+|++++.|||++++.+.   ..++||+|||+|+++
T Consensus       306 ~-----~~~~~~~~iG~p~~~~~v~i~d-~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~  376 (705)
T PRK06060        306 R-----VDEWRLGTLGRVLPPYEIRVVA-PDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCID  376 (705)
T ss_pred             c-----CCCCCcCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEEC
Confidence            2     1223457899999999999999 578999999999999999999999999988653   357999999999999


Q ss_pred             CCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHh
Q 039837          428 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE---DDIMDFVAS  504 (544)
Q Consensus       428 ~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~  504 (544)
                      +||++++.||.||+||++|++|++.+||++|.+++.|.+++|++.++...++.++++++..++...+.   .++.+++++
T Consensus       377 ~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~  456 (705)
T PRK06060        377 SDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLN  456 (705)
T ss_pred             CCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998877888999998776544433   478889999


Q ss_pred             cccCCCceeEEEEeecCCCCCCcccchHHHHHHH
Q 039837          505 NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM  538 (544)
Q Consensus       505 ~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~  538 (544)
                      +|+.|++|..++++++||+|.+||++|++|++++
T Consensus       457 ~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~  490 (705)
T PRK06060        457 RLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS  490 (705)
T ss_pred             hCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence            9999999999999999999999999999999875

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=9.9e-68  Score=550.60  Aligned_cols=496  Identities=19%  Similarity=0.291  Sum_probs=398.1

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCC--------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHH
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSG--------KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVAL  106 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~--------~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~l  106 (544)
                      ..|+.+.|.+.++++|+++|+++...+        +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus         5 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~l   84 (552)
T PRK09274          5 MANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTF   84 (552)
T ss_pred             hhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHH
Confidence            358899999999999999999875321        289999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEecc--chHHHhhcCC---C-cEEEecccccccccCHHHHHHhhh--
Q 039837          107 GIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYA--PIYEKVKGLG---L-PIIVLGEERIESAINWSELIEAAD--  178 (544)
Q Consensus       107 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~--~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~--  178 (544)
                      ||+++|++++|+++.++.+++.+++++++++++|+++  .....+....   . ..+.++.........+..+.....  
T Consensus        85 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  164 (552)
T PRK09274         85 ALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLRDGAAA  164 (552)
T ss_pred             HHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccccccCCccHHHhcccCccc
Confidence            9999999999999999999999999999999999865  2222222111   1 122222111111122333221100  


Q ss_pred             -----hcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccc
Q 039837          179 -----KAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKG  253 (544)
Q Consensus       179 -----~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~  253 (544)
                           ...........+||||||.||+|++||+++.+.+......+  ++..+++.+..+|++|.+++        ..|.
T Consensus       165 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~~~~pl~~~~~~--------~~g~  234 (552)
T PRK09274        165 PFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY--GIEPGEIDLPTFPLFALFGP--------ALGM  234 (552)
T ss_pred             cCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh--CCCCCceeeeccCHHHhhhh--------hhCC
Confidence                 01122334567899999999999999999999888777666  67888999999999876543        3466


Q ss_pred             eEEEcC-------ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhc
Q 039837          254 KVVMMN-------RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKF  326 (544)
Q Consensus       254 ~~~~~~-------~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~  326 (544)
                      ++++..       .+++..+++.++++++|+++++|+++..|.+.......++++++.  +++||+++++++.+++.+.|
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~--~~~gG~~~~~~~~~~~~~~~  312 (552)
T PRK09274        235 TSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRR--VISAGAPVPIAVIERFRAML  312 (552)
T ss_pred             eEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhE--EEecCCcCCHHHHHHHHHHc
Confidence            776653       357899999999999999999999999998876555567778777  99999999999999999999


Q ss_pred             C-CCeEEecccCccccccccccCCC-C----CCCCCCCCCcccccCCCceEEEEeCC--------CCCcCCCCCCceEEE
Q 039837          327 P-GVQVQEAYGLTEHSCITLTYGDP-A----NPSAGSKKNSVGFILPNLEVKFINPE--------TGKSLPSNTPGELCV  392 (544)
Q Consensus       327 ~-~~~i~~~yG~tE~~~~~~~~~~~-~----~~~~~~~~~~~G~~~~~~~~~i~d~~--------~~~~~~~g~~Gel~v  392 (544)
                      + ++++++.||+||++.++...... .    .........++|+|+++++++|+|++        ++++++.|+.|||++
T Consensus       313 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v  392 (552)
T PRK09274        313 PPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVV  392 (552)
T ss_pred             CCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEE
Confidence            6 47999999999998765433211 0    00011223478999999999999852        467889999999999


Q ss_pred             ecccccccccCChhhhhccc--CCCC--eeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceE
Q 039837          393 RSQCVMQGYYNNEEETARTI--DKNG--WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAA  468 (544)
Q Consensus       393 ~~~~~~~gy~~~~~~~~~~~--~~~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  468 (544)
                      +|+.++.|||++++.+...+  +.+|  ||+|||+|+++++|++++.||.+|+|+++|.+|+|.+||++|.+||+|.+++
T Consensus       393 ~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~  472 (552)
T PRK09274        393 AGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSA  472 (552)
T ss_pred             ecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeE
Confidence            99999999999999988765  3456  9999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccC---CCceeEEEEeecCCCC--CCcccchHHHHHHHHHhhh
Q 039837          469 VVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVAT---YKKVRVLHFVDGIPKS--HSGKIMRRILKDKMLEKMR  543 (544)
Q Consensus       469 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~---~~~p~~~~~~~~~P~t--~~GKi~r~~l~~~~~~~~~  543 (544)
                      |++++++ .++.+++++++.++...+.+++.+.+++.+..   ++.|..++++++||+|  .+|||+|++|++++.+++.
T Consensus       473 v~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~~~~  551 (552)
T PRK09274        473 LVGVGVP-GAQRPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAAKQLK  551 (552)
T ss_pred             EEEeCCC-CCceEEEEEEccCccccchHHHhhhhHHHHHhcCCCcceeEEeccCCCCccccccccccHHHHHHHHHHhhc
Confidence            9999875 35678888888877666666677777665554   4567889999999999  7999999999999988764

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=9e-69  Score=650.00  Aligned_cols=522  Identities=20%  Similarity=0.274  Sum_probs=445.2

Q ss_pred             CCCCcceeeccccccCCccee-eecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHH
Q 039837            2 AMPNSFSVPVPLAAAHDEEHI-FRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKAL   80 (544)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L   80 (544)
                      ++|+..+..+++..+++..++ ..++....+.+...++.++|.++|+++|+++|+++.  ++++||+||.++++++|..|
T Consensus      3060 ~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L 3137 (3956)
T PRK12467       3060 NNPAARLGELPTLAAHERRQVLHAWNATAAAYPSERLVHQLIEAQVARTPEAPALVFG--DQQLSYAELNRRANRLAHRL 3137 (3956)
T ss_pred             hCcCCchhhccCCCHHHHHHHHHhhccCCCCCCccccHHHHHHHHHHhCCCcceEeeC--CcccCHHHHHHHHHHHHHHH
Confidence            578888999999988887776 345555555666679999999999999999999997  78999999999999999999


Q ss_pred             HHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-CCcEEEe
Q 039837           81 RSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-GLPIIVL  159 (544)
Q Consensus        81 ~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~  159 (544)
                      .+.|+++|++|+++++|++++++++|||+++|++++|++|.++.+++.++++.+++++++++....+.+... ....+.+
T Consensus      3138 ~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~~ 3217 (3956)
T PRK12467       3138 IAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTL 3217 (3956)
T ss_pred             HHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccccCCceeee
Confidence            999999999999999999999999999999999999999999999999999999999999998776554332 1233333


Q ss_pred             cccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHH
Q 039837          160 GEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIY  239 (544)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  239 (544)
                      +......... .   ...........+++.+||||||.||||+++|+++.+.+.+....+  ++..+++++.++|++|..
T Consensus      3218 ~~~~~~~~~~-~---~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~--~~~~~d~~l~~~~~~fd~ 3291 (3956)
T PRK12467       3218 DRLDLNGYSE-N---NPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY--ELDANDRVLLFMSFSFDG 3291 (3956)
T ss_pred             cchhhcccCC-C---CCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc--CCCcCCEEEEecCccHhH
Confidence            3211100000 0   000011223345788999999999999999999999999888877  788999999999999998


Q ss_pred             HHHHHHHhhHhccceEEEcCc--cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHh
Q 039837          240 GITGICCATLRNKGKVVMMNR--FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPD  317 (544)
Q Consensus       240 g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~  317 (544)
                      +. ..++.++..|+++++.+.  .++..+++.|+++++|++.++|+++..|++...  ...++++|.  +++|||+++++
T Consensus      3292 ~~-~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~--~~~gGe~~~~~ 3366 (3956)
T PRK12467       3292 AQ-ERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG--GADCASLDI--YVFGGEAVPPA 3366 (3956)
T ss_pred             HH-HHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc--ccCCCCceE--EEEecCCCCHH
Confidence            86 788999999999999875  689999999999999999999999999987542  335667777  99999999999


Q ss_pred             HHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccc
Q 039837          318 LLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCV  397 (544)
Q Consensus       318 ~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~  397 (544)
                      +.++|.+.++++.++|.||+||++..++......+........++|+|++|++++|+| +.+++++.|+.|||+|+|+.+
T Consensus      3367 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v 3445 (3956)
T PRK12467       3367 AFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGL 3445 (3956)
T ss_pred             HHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhh
Confidence            9999999888899999999999987666543322221223457899999999999999 689999999999999999999


Q ss_pred             cccccCChhhhhcccCCCC-------eeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEE
Q 039837          398 MQGYYNNEEETARTIDKNG-------WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV  470 (544)
Q Consensus       398 ~~gy~~~~~~~~~~~~~~~-------~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  470 (544)
                      ++||+++|+.|.+.|..++       ||+|||+|++++||++++.||.||+||++|.+|++.+||++|.++|+|.+++|+
T Consensus      3446 ~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~ 3525 (3956)
T PRK12467       3446 ARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVL 3525 (3956)
T ss_pred             hhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEE
Confidence            9999999999999885544       699999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHH
Q 039837          471 SLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM  538 (544)
Q Consensus       471 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~  538 (544)
                      +.. ...+..++++++.........++++++++++||.|++|..++++++||+|++||++|++|++..
T Consensus      3526 ~~~-~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467       3526 ARD-GAGGKQLVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKALPDPD 3592 (3956)
T ss_pred             Eec-CCCCcEEEEEEeCCCCCcccHHHHHHHHhccCChhhCCCeeeeeccCCCCCCCccchhhcCCCC
Confidence            875 3457789999988766566778999999999999999999999999999999999999998754

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.3e-67  Score=539.45  Aligned_cols=489  Identities=26%  Similarity=0.380  Sum_probs=418.7

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF  115 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  115 (544)
                      +|+.+.|+++|+++|+++|+++.  ++.+||.||.+++.++|.+|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~a~~~~--~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   79 (497)
T PRK06145          2 FNLSASIAFHARRTPDRAALVYR--DQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVF   79 (497)
T ss_pred             ccHHHHHHHHHHHCCCceEEEEC--CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            58899999999999999999986  7899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhh------hhcCCCCCCCCC
Q 039837          116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAA------DKAGNNFSNDDD  189 (544)
Q Consensus       116 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  189 (544)
                      +|+++..+.+++.++++.+++++++++.+....... ....+.++.....   .+..+....      ............
T Consensus        80 v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~i~  155 (497)
T PRK06145         80 LPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-ETPKIVIDAAAQA---DSRRLAQGGLEIPPQAAVAPTDLVRLM  155 (497)
T ss_pred             EecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-ccceEEecCcccc---hhHHHhccCCCCCCCCCCCccceEEEE
Confidence            999999999999999999999999998776543321 1122222211000   011111000      011122233467


Q ss_pred             CCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHH
Q 039837          190 VKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDA  269 (544)
Q Consensus       190 ~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~  269 (544)
                      +||||||.||+|++||+++...+......+  +...++.++...|++|.+++....+.++..|+++++.+.+++..+++.
T Consensus       156 ~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~  233 (497)
T PRK06145        156 YTSGTTDRPKGVMHSYGNLHWKSIDHVIAL--GLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAA  233 (497)
T ss_pred             eCCCCCCCCcEEEEecHHHHHHHHHHHHhh--CCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHH
Confidence            899999999999999999987665555555  678889999999999999887767788999999999988999999999


Q ss_pred             HHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCC
Q 039837          270 LITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGD  349 (544)
Q Consensus       270 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~  349 (544)
                      ++++++|++.++|+++..++........++++++.  +++||++++.++++.+.+.|+++++++.||+||++...+....
T Consensus       234 i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~--~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  311 (497)
T PRK06145        234 IERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAW--CIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEA  311 (497)
T ss_pred             HHHhCCeEEEehHHHHHHHHcCCCccccccccceE--EEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccC
Confidence            99999999999999999998876555556677666  9999999999999999999988999999999999875543321


Q ss_pred             CCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCC
Q 039837          350 PANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDD  429 (544)
Q Consensus       350 ~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~  429 (544)
                      .   ......+++|+|+++++++++| +++..++.|+.|||+++|+.++.||+++++.+...| .++||+|||+++++.+
T Consensus       312 ~---~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~  386 (497)
T PRK06145        312 G---REIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEE  386 (497)
T ss_pred             c---cccccCCCcccCCCCceEEEEC-CCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCC
Confidence            1   1223456899999999999999 578899999999999999999999999999998888 5789999999999999


Q ss_pred             CcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 039837          430 GDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATY  509 (544)
Q Consensus       430 g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~  509 (544)
                      |++++.||.+|+||++|.++++.+||+.|.++|+|.+++|++.+++..++.+++++++.+....+.+++.++++++|+++
T Consensus       387 g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~  466 (497)
T PRK06145        387 GFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQRLASF  466 (497)
T ss_pred             CcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHHHHHHHHHhhhcC
Confidence            99999999999999999999999999999999999999999999888888899999987766678899999999999999


Q ss_pred             CceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          510 KKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       510 ~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      ++|..++++++||+|++||++|++|++++.
T Consensus       467 ~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        467 KVPRQLKVRDELPRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             CCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence            999999999999999999999999998763

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.2e-66  Score=537.31  Aligned_cols=491  Identities=26%  Similarity=0.392  Sum_probs=423.8

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      +.+|.+++.++| .+|+++|+.+. +++.+||+||.++++++|.+|++.|+++||+|+++++|+.+++++++||+++|++
T Consensus         2 ~~~l~~~~~~~~-~~~~~~a~~~~-~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~   79 (504)
T PRK07514          2 NNNLFDALRAAF-ADRDAPFIETP-DGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAV   79 (504)
T ss_pred             CccHHHHHHHHh-hCCCCeEEEeC-CCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence            458899999999 99999999874 3679999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC----Cc-EEEecccccccccCHHHHHHh------hhhcCCC
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG----LP-IIVLGEERIESAINWSELIEA------ADKAGNN  183 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  183 (544)
                      ++|+++.++..++..+++.++++++++++.....+....    .. .+.++....   ..+.+....      .......
T Consensus        80 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  156 (504)
T PRK07514         80 FLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGT---GSLLEAAAAAPDDFETVPRGAD  156 (504)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCc---ccHHHhhhhcCcccCcccCCCC
Confidence            999999999999999999999999999987665543321    22 222222111   111111110      0011223


Q ss_pred             CCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCH
Q 039837          184 FSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFEL  263 (544)
Q Consensus       184 ~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~  263 (544)
                      ....+.+||||||.||+|.+||+++...+......+  +...++++++.+|++|..|+...++.++..|+++++.+..++
T Consensus       157 ~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~  234 (504)
T PRK07514        157 DLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW--RFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDP  234 (504)
T ss_pred             CeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh--CCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCH
Confidence            344678999999999999999999999887776666  677889999999999999987788899999999999988899


Q ss_pred             HHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcccccc
Q 039837          264 RAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCI  343 (544)
Q Consensus       264 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~  343 (544)
                      ..+++.+  .++|++.++|+++..+++........+++++.  +++||+++++++.+.|.+.+ +.++++.||+||++..
T Consensus       235 ~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~  309 (504)
T PRK07514        235 DAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRL--FISGSAPLLAETHREFQERT-GHAILERYGMTETNMN  309 (504)
T ss_pred             HHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceee--EEecCCCCCHHHHHHHHHHh-CCcceeeccccccccc
Confidence            9999998  37999999999999998876555556777777  99999999999999999988 7899999999998865


Q ss_pred             ccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCce
Q 039837          344 TLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDI  423 (544)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~  423 (544)
                      .....     .......++|.|+++++++++|++++++++.|+.|||+++|+.++.||+++++.+...|..++||+|||+
T Consensus       310 ~~~~~-----~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl  384 (504)
T PRK07514        310 TSNPY-----DGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDL  384 (504)
T ss_pred             ccCCc-----cccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecce
Confidence            43221     1233456899999999999999889999999999999999999999999999999988888899999999


Q ss_pred             EEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHH
Q 039837          424 GYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVA  503 (544)
Q Consensus       424 ~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~  503 (544)
                      ++++++|.+++.||.+|+||++|.+++|.+||+++.++++|.+++|+++++...++.++++++..++...+.+++.+.++
T Consensus       385 ~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  464 (504)
T PRK07514        385 GKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAALK  464 (504)
T ss_pred             EEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998887788899999988777778899999999


Q ss_pred             hcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837          504 SNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM  542 (544)
Q Consensus       504 ~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~  542 (544)
                      ++++++++|..+++++++|+|.+||++|++|+++|++.+
T Consensus       465 ~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~~  503 (504)
T PRK07514        465 GRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADLF  503 (504)
T ss_pred             hhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHhhc
Confidence            999999999999999999999999999999999987653

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.9e-67  Score=550.58  Aligned_cols=498  Identities=22%  Similarity=0.267  Sum_probs=404.1

Q ss_pred             CCH-HHHHHhhhhhcCCceEEEEcc----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHH
Q 039837           36 VTL-PDFVLQDAELYADKVAFVEAV----SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA  110 (544)
Q Consensus        36 ~~l-~~~l~~~a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~  110 (544)
                      .|+ ...|+++++.+|+++|+++..    ..+.+||+||.+++.++|++|++.|+++||+|+++++|+++++++++||++
T Consensus        52 ~n~~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  131 (629)
T PRK10524         52 TNLCHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACAR  131 (629)
T ss_pred             eeHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            455 556778888899999998631    236899999999999999999999999999999999999999999999999


Q ss_pred             hcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchH---------HHhh---c----CCCcEEEeccccc------cccc
Q 039837          111 AGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIY---------EKVK---G----LGLPIIVLGEERI------ESAI  168 (544)
Q Consensus       111 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~---~----~~~~~~~~~~~~~------~~~~  168 (544)
                      +|++++|+++.++.+++..++++++++++|+++...         +.+.   .    ....++.++....      ....
T Consensus       132 ~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  211 (629)
T PRK10524        132 IGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDV  211 (629)
T ss_pred             hCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcc
Confidence            999999999999999999999999999999875421         1111   1    1123333332110      1122


Q ss_pred             CHHHHHHhhhh-------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHh-hccccCCcccCccEEEEecchhHHHH
Q 039837          169 NWSELIEAADK-------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCS-TLFSVVPEMIGQVTTLGLIPFFHIYG  240 (544)
Q Consensus       169 ~~~~~~~~~~~-------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~g  240 (544)
                      .+..+......       ........+.+||||||.||||+++|.+++..... ....+  ++..++++++..|+.|..+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~  289 (629)
T PRK10524        212 DYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF--GGKAGETFFCASDIGWVVG  289 (629)
T ss_pred             cHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc--CCCCCCEEEEcCCCCeecc
Confidence            34443322110       11233446789999999999999999987544332 33333  6678899999999999988


Q ss_pred             HHHHHHhhHhccceEEEcCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCC--CCccCccccccccEEEecCCC
Q 039837          241 ITGICCATLRNKGKVVMMNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPI--VDEFDLSKLQLRAVMTAAAPL  314 (544)
Q Consensus       241 ~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~v~~~G~~~  314 (544)
                      ....++.++..|+++++.+.    .++..+++.++++++|++.++|+++..|.+...  ....++++++.  +++||+++
T Consensus       290 ~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~--i~~~Ge~l  367 (629)
T PRK10524        290 HSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRA--LFLAGEPL  367 (629)
T ss_pred             chHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeE--EEEeCCCC
Confidence            77788899999999998752    468899999999999999999999999877542  13345677777  99999999


Q ss_pred             CHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEec
Q 039837          315 APDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRS  394 (544)
Q Consensus       315 ~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~  394 (544)
                      ++++.+++.+.+ ++++++.||+||++..+....... .......+++|+|++|++++|+|+++|++++.|+.|||+++|
T Consensus       368 ~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~g  445 (629)
T PRK10524        368 DEPTASWISEAL-GVPVIDNYWQTETGWPILAIARGV-EDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEG  445 (629)
T ss_pred             CHHHHHHHHHhc-CCCeEeccccccccchhhcCCCCc-ccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcC
Confidence            999999999988 789999999999985433322110 112345678999999999999995589999999999999999


Q ss_pred             c---cccccccCChhhhhccc---CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceE
Q 039837          395 Q---CVMQGYYNNEEETARTI---DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAA  468 (544)
Q Consensus       395 ~---~~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  468 (544)
                      |   +.+.|||++++.+...+   ..++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus       446 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~  525 (629)
T PRK10524        446 PLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVA  525 (629)
T ss_pred             CCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEE
Confidence            8   57889999998776543   14689999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCceeEEEEEeCCCCCCC--------HHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          469 VVSLPDEEAGEIPAACVVMNPNAKES--------EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       469 v~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      |+++++...|+.+++++++.++...+        .++++++++++|+.+++|..++++++||+|.+||++|+.|++++.
T Consensus       526 vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~  604 (629)
T PRK10524        526 VVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAE  604 (629)
T ss_pred             EEccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHc
Confidence            99999988889999999987654322        367889999999999999999999999999999999999999864

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.3e-67  Score=603.00  Aligned_cols=529  Identities=16%  Similarity=0.206  Sum_probs=422.6

Q ss_pred             CCCCcceeeccccccCCcceeeecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEc-------cCCceeeHHHHHHHHH
Q 039837            2 AMPNSFSVPVPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEA-------VSGKAYTYAQVARDTR   74 (544)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~-------~~~~~~Ty~el~~~~~   74 (544)
                      ++|++.+.++++.++.+.+.+..............++.++|.++|+.+|+++|+++.       ..++++||+||.++++
T Consensus       202 ~~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~  281 (1389)
T TIGR03443       202 SNPDEPIGKVSLITPSQKSLLPDPTKDLDWSGFRGAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASN  281 (1389)
T ss_pred             hCcCCceecccCCCHHHHhhhhccccccCcCcccCcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHH
Confidence            588999999999887776544322111111122458999999999999999999863       1357899999999999


Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccch---HHHhhc
Q 039837           75 GFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPI---YEKVKG  151 (544)
Q Consensus        75 ~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---~~~~~~  151 (544)
                      ++|++|.+.|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++++....   ...+..
T Consensus       282 ~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~  361 (1389)
T TIGR03443       282 ILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRD  361 (1389)
T ss_pred             HHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999986542   111110


Q ss_pred             C---------CCcEEEeccc-cc-ccccCH--HHHHH-------hh--hhcCCCCCCCCCCCCCCCcCcceeeccHHHHH
Q 039837          152 L---------GLPIIVLGEE-RI-ESAINW--SELIE-------AA--DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLV  209 (544)
Q Consensus       152 ~---------~~~~~~~~~~-~~-~~~~~~--~~~~~-------~~--~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~  209 (544)
                      .         ..+.+.+... .. ......  .+...       ..  ........+.+.|||||||.||||++||+++.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~  441 (1389)
T TIGR03443       362 YIDKELELRTEIPALALQDDGSLVGGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLA  441 (1389)
T ss_pred             hhhcccccccccceEEecccccccccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHH
Confidence            0         0111111110 00 000000  00000       00  00112334567899999999999999999999


Q ss_pred             HHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc---cCHHHHHHHHHHcCceeeecchHHHH
Q 039837          210 ANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR---FELRAFLDALITHEVTFAPIVPPIIL  286 (544)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~  286 (544)
                      +.+.+....+  ++...++++..+|++|..++ ..++.++..|+++++.+.   .++..+.+.++++++|++.++|+++.
T Consensus       442 ~~~~~~~~~~--~~~~~d~~~~~~~~~~d~~~-~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~  518 (1389)
T TIGR03443       442 YYFPWMAKRF--GLSENDKFTMLSGIAHDPIQ-RDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQ  518 (1389)
T ss_pred             HHHHHHHHhc--CCCCCCEEEEecCceecchH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHH
Confidence            9988887777  77889999999999998876 678899999999999764   35788999999999999999999999


Q ss_pred             HHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCC------CCCCCC
Q 039837          287 SLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPS------AGSKKN  360 (544)
Q Consensus       287 ~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~------~~~~~~  360 (544)
                      .|....   ...+++++.  +++||+++++.+.+++.+.+++++++|.||+||++..++.........      ......
T Consensus       519 ~l~~~~---~~~~~~lr~--~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (1389)
T TIGR03443       519 LLSAQA---TTPIPSLHH--AFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVM  593 (1389)
T ss_pred             HHHhcc---cccCCCccE--EEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcC
Confidence            987543   234667666  999999999999999998888999999999999987655432111100      012346


Q ss_pred             cccccCCCceEEEEeCC-CCCcCCCCCCceEEEecccccccccCChhhhhcccC--------------------------
Q 039837          361 SVGFILPNLEVKFINPE-TGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTID--------------------------  413 (544)
Q Consensus       361 ~~G~~~~~~~~~i~d~~-~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--------------------------  413 (544)
                      ++|+|+++++++|+|++ .+.+++.|+.|||+|+|+++++||+++|+.|.+.|.                          
T Consensus       594 ~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  673 (1389)
T TIGR03443       594 PAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWL  673 (1389)
T ss_pred             cCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccC
Confidence            79999999999999953 357899999999999999999999999999988773                          


Q ss_pred             --CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCC
Q 039837          414 --KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA  491 (544)
Q Consensus       414 --~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  491 (544)
                        .++||+|||+|++++||.+++.||.||+||++|++|+|.+||++|.+||.|.+++|++.++...+..+++++++....
T Consensus       674 ~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~  753 (1389)
T TIGR03443       674 GPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKS  753 (1389)
T ss_pred             CCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCcc
Confidence              257999999999999999999999999999999999999999999999999999999888777778899998876221


Q ss_pred             -C-------------------------CCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHH
Q 039837          492 -K-------------------------ESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM  538 (544)
Q Consensus       492 -~-------------------------~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~  538 (544)
                       .                         ...++++++++++|+.|++|..++++++||+|++||++|++|+..+
T Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~~  826 (1389)
T TIGR03443       754 DELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPD  826 (1389)
T ss_pred             ccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCCCc
Confidence             1                         0136788999999999999999999999999999999999997543

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3.8e-67  Score=552.47  Aligned_cols=499  Identities=20%  Similarity=0.262  Sum_probs=389.2

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEc-----cCC--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHH
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEA-----VSG--KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA  105 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~-----~~~--~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~  105 (544)
                      +...|+.++|.+.++++|+++|+...     ..+  +++||+||.++++++|++|.+.|+++||+|+++++|+++|++++
T Consensus        40 ~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~  119 (660)
T PLN02861         40 ADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAM  119 (660)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            34568999999999999999999642     112  47999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC------CCc-EEEecccc----------ccccc
Q 039837          106 LGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL------GLP-IIVLGEER----------IESAI  168 (544)
Q Consensus       106 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~-~~~~~~~~----------~~~~~  168 (544)
                      +||+++|+++||+++.++.+++.+++++++++++|++.+....+...      .++ ++.++...          .....
T Consensus       120 lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~  199 (660)
T PLN02861        120 EACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCF  199 (660)
T ss_pred             HHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEE
Confidence            99999999999999999999999999999999999987665544221      122 22222111          01113


Q ss_pred             CHHHHHHhhh------hcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccC---CcccCccEEEEecchhHHH
Q 039837          169 NWSELIEAAD------KAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV---PEMIGQVTTLGLIPFFHIY  239 (544)
Q Consensus       169 ~~~~~~~~~~------~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~  239 (544)
                      .++++.....      .........+.+||||||.||||++||+++.+.+......+.   .....++++++++|++|.+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~  279 (660)
T PLN02861        200 SWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVY  279 (660)
T ss_pred             EHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHH
Confidence            4554443211      011223345789999999999999999999988766554331   0246789999999999999


Q ss_pred             HHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCC---------------------------
Q 039837          240 GITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDP---------------------------  292 (544)
Q Consensus       240 g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------------------  292 (544)
                      ++.. .+.++..|+++++.. .++..+++.|+++++|+++++|+++..|.+..                           
T Consensus       280 ~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~  357 (660)
T PLN02861        280 DQVI-ETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLR  357 (660)
T ss_pred             HHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Confidence            9854 455899999998874 58899999999999999999999999886410                           


Q ss_pred             ----------CCCccC-------c-cccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCC
Q 039837          293 ----------IVDEFD-------L-SKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPS  354 (544)
Q Consensus       293 ----------~~~~~~-------~-~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~  354 (544)
                                ......       + +++|+  +++||+++++++. +|.+.++...+++.||+||+++.++...    ..
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~--~~~Ggapl~~~~~-~~~~~~~~~~l~~~YG~TE~~~~~~~~~----~~  430 (660)
T PLN02861        358 KGLKQEEASPRLDRLVFDKIKEGLGGRVRL--LLSGAAPLPRHVE-EFLRVTSCSVLSQGYGLTESCGGCFTSI----AN  430 (660)
T ss_pred             cCCCCcCccHhHHHHHHHHHHHHhCCcEEE--EEECCCCCCHHHH-HHHHHHcCCCeeEecchhhhhhceeecc----cc
Confidence                      000000       1 24445  9999999999975 5666664457999999999976554332    11


Q ss_pred             CCCCCCcccccCCCceEEEEe-CCCC-CcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcE
Q 039837          355 AGSKKNSVGFILPNLEVKFIN-PETG-KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDI  432 (544)
Q Consensus       355 ~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~  432 (544)
                      .....+++|+|+++++++|+| ++.| ..++.+..|||+++||+++.|||++|+.|.+.| .+|||+|||+|++|+||++
T Consensus       431 ~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l  509 (660)
T PLN02861        431 VFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPNGAM  509 (660)
T ss_pred             cCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhh-hccCcccCceEEECCCCcE
Confidence            123467999999999999998 3334 344566789999999999999999999999999 5899999999999999999


Q ss_pred             EEEeecCCceee-cceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCC--------C--CCCH------
Q 039837          433 FIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN--------A--KESE------  495 (544)
Q Consensus       433 ~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--------~--~~~~------  495 (544)
                      ++.||.||+||+ +|++|+|.+||++|.+||.|.+++|++.+.   +..++|++++...        .  ..+.      
T Consensus       510 ~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~---~~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~  586 (660)
T PLN02861        510 KIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF---ESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKN  586 (660)
T ss_pred             EEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC---cceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcC
Confidence            999999999997 799999999999999999999999998762   3578899887532        0  0111      


Q ss_pred             ----HHHHHHHHh-----cccCCCceeEEEEee-cC-----CCCCCcccchHHHHHHHHHhhhC
Q 039837          496 ----DDIMDFVAS-----NVATYKKVRVLHFVD-GI-----PKSHSGKIMRRILKDKMLEKMRK  544 (544)
Q Consensus       496 ----~~l~~~l~~-----~l~~~~~p~~~~~~~-~~-----P~t~~GKi~r~~l~~~~~~~~~~  544 (544)
                          ..+.+.+++     .++.+.++..+...+ .|     .+|+++|++|+.+.+.|+++|++
T Consensus       587 ~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~  650 (660)
T PLN02861        587 LKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQ  650 (660)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHH
Confidence                123333432     478899999888864 56     89999999999999999999863

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=2.1e-66  Score=537.19  Aligned_cols=487  Identities=24%  Similarity=0.357  Sum_probs=410.8

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      ..|+.++|+++|+.+|+++|+++.  ++.+||+||.++++++|.+|.+.|+++||+|+++++|+.+++++++||+++|++
T Consensus        22 ~~~l~~~~~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~   99 (527)
T TIGR02275        22 DKPLTDILRDQAARYPDAIAIICG--NRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIA   99 (527)
T ss_pred             CCcHHHHHHHHHHHCCCceEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeE
Confidence            458999999999999999999986  789999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccchH--------HHhhcC--CCcEEEecccccccccCHHHHHHhh------h
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPIY--------EKVKGL--GLPIIVLGEERIESAINWSELIEAA------D  178 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------~  178 (544)
                      ++++++..+.+++.++++.+++++++++....        ..+...  ....+.+..... ............      .
T Consensus       100 ~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  178 (527)
T TIGR02275       100 PVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTR-VEAELFLWLESPAEPVKFP  178 (527)
T ss_pred             EeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCC-CcchhhHHhhCcCccccCC
Confidence            99999999999999999999999999986531        111111  112222211110 000011111100      0


Q ss_pred             hcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHH-HHHhhHhccceEEE
Q 039837          179 KAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITG-ICCATLRNKGKVVM  257 (544)
Q Consensus       179 ~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~  257 (544)
                      ...........+||||||.||||++||+++..++......+  ....+++++..+|++|.+++.. .++.++..|+++++
T Consensus       179 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~--~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~  256 (527)
T TIGR02275       179 PTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC--WLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVL  256 (527)
T ss_pred             CCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc--CCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEE
Confidence            11122334567899999999999999999998887776665  6788999999999999998754 47888999999999


Q ss_pred             cCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccC
Q 039837          258 MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGL  337 (544)
Q Consensus       258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  337 (544)
                      .+..++..+++.++++++|++.++|+++..|++........+++++.  +++||+++++++.+++.+.+ ++++++.||+
T Consensus       257 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~--~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~  333 (527)
T TIGR02275       257 APDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKL--LQVGGAKFSEAAARRVPAVF-GCQLQQVFGM  333 (527)
T ss_pred             CCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEE--EEEcCCCCCHHHHHHHHHHh-CCeEEeeecc
Confidence            88889999999999999999999999999998876655566677777  99999999999999999988 8999999999


Q ss_pred             ccccccccccCCCCCCCCCCCCCcccccC-CCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCC
Q 039837          338 TEHSCITLTYGDPANPSAGSKKNSVGFIL-PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNG  416 (544)
Q Consensus       338 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~  416 (544)
                      ||++.......    .......+++|+|+ ++..++++| +++++++.|+.|||+++|+.++.||+++++.+...++.+|
T Consensus       334 tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg  408 (527)
T TIGR02275       334 AEGLVNYTRLD----DPAEIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEG  408 (527)
T ss_pred             CccCccccCCC----CccccccccCCCCCCCCceEEEEC-CCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCC
Confidence            99653332211    11223456789999 588999999 6789999999999999999999999999999999898899


Q ss_pred             eeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 039837          417 WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED  496 (544)
Q Consensus       417 ~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  496 (544)
                      ||+|||+|+++++|++++.||.+|+|+++|.+++|.+||++|.++|+|.+++|++.++...++.+++++++.++ ..+..
T Consensus       409 ~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~-~~~~~  487 (527)
T TIGR02275       409 FYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP-ALKAA  487 (527)
T ss_pred             CEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC-CCCHH
Confidence            99999999999999999999999999999999999999999999999999999999998888899999987654 46788


Q ss_pred             HHHHHHHhc-ccCCCceeEEEEeecCCCCCCcccchHHHH
Q 039837          497 DIMDFVASN-VATYKKVRVLHFVDGIPKSHSGKIMRRILK  535 (544)
Q Consensus       497 ~l~~~l~~~-l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~  535 (544)
                      ++.++++++ ++.+++|..++++++||+|.+||++|++|+
T Consensus       488 ~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~  527 (527)
T TIGR02275       488 QLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR  527 (527)
T ss_pred             HHHHHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence            999999985 999999999999999999999999999874

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.8e-66  Score=537.49  Aligned_cols=498  Identities=32%  Similarity=0.501  Sum_probs=429.6

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG  112 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G  112 (544)
                      +.+.++.++|.+.++.+|+++|+.+.  ++.+||+||+++++++|++|.+.|+++|++|+++++|+.+++++++||+++|
T Consensus         3 ~~~~~l~~~l~~~~~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G   80 (521)
T PRK06187          3 DYPLTIGRILRHGARKHPDKEAVYFD--GRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIG   80 (521)
T ss_pred             cccCCHHHHHHHHHHHCCCceEEEeC--CceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            34679999999999999999999987  6779999999999999999999999999999999999999999999999999


Q ss_pred             CeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-----C-cEEEeccccc----ccccCHHHHHHhhhhc--
Q 039837          113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----L-PIIVLGEERI----ESAINWSELIEAADKA--  180 (544)
Q Consensus       113 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~-~~~~~~~~~~----~~~~~~~~~~~~~~~~--  180 (544)
                      ++++++++.++.+++..+++.+++++++++.+..+.+....     . ..+..++...    .....+.++.......  
T Consensus        81 ~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (521)
T PRK06187         81 AVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFD  160 (521)
T ss_pred             eEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhcCCccCC
Confidence            99999999999999999999999999999988766654432     1 2233322211    2233444443321111  


Q ss_pred             ----CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEE
Q 039837          181 ----GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVV  256 (544)
Q Consensus       181 ----~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~  256 (544)
                          .........+||||||.||+|.+||+++.+........+  ++..+++++..+|++|.+++...+ .++..|++++
T Consensus       161 ~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~-~~l~~G~~~v  237 (521)
T PRK06187        161 FPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL--KLSRDDVYLVIVPMFHVHAWGLPY-LALMAGAKQV  237 (521)
T ss_pred             CCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh--CCCCCCEEEEeCCchHHhhHHHHH-HHHHhCCEEE
Confidence                112234567899999999999999999998888777766  788999999999999999885444 4999999999


Q ss_pred             EcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEeccc
Q 039837          257 MMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYG  336 (544)
Q Consensus       257 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  336 (544)
                      +.+..++..+++.++++++|+++++|+++..|.+........+++++.  +++||+++++++++.|.+.| ++++++.||
T Consensus       238 ~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~--v~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG  314 (521)
T PRK06187        238 IPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRL--VIYGGAALPPALLREFKEKF-GIDLVQGYG  314 (521)
T ss_pred             ecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhE--EEEcCcCCCHHHHHHHHHHh-Ccchheeec
Confidence            998889999999999999999999999999999887765666777777  99999999999999999999 899999999


Q ss_pred             CccccccccccCCCCCC-CCCCCCCcccccCCCceEEEEeCCCCCcCCC--CCCceEEEecccccccccCChhhhhcccC
Q 039837          337 LTEHSCITLTYGDPANP-SAGSKKNSVGFILPNLEVKFINPETGKSLPS--NTPGELCVRSQCVMQGYYNNEEETARTID  413 (544)
Q Consensus       337 ~tE~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~~~  413 (544)
                      +||+|.+.......... .......++|.|++++.++|+| +++.+++.  |+.|||+++|+.++.||+++++.+...| 
T Consensus       315 ~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~-  392 (521)
T PRK06187        315 MTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI-  392 (521)
T ss_pred             cCccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHh-
Confidence            99998766554311100 0013667899999999999999 56888888  9999999999999999999999998888 


Q ss_pred             CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCC
Q 039837          414 KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKE  493 (544)
Q Consensus       414 ~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  493 (544)
                      .++||+|||+++++++|.+++.||.+|+++++|.++++.+||++|.++++|.+++|++.+++..++.+++++++.++...
T Consensus       393 ~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  472 (521)
T PRK06187        393 DGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATL  472 (521)
T ss_pred             hCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCC
Confidence            56799999999999999999999999999999999999999999999999999999999888888899999998887777


Q ss_pred             CHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          494 SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       494 ~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      +.+++.++++++++++.+|..++++++||+|++||++|+.|+++|++
T Consensus       473 ~~~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~  519 (521)
T PRK06187        473 DAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAE  519 (521)
T ss_pred             CHHHHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhc
Confidence            88999999999999999999999999999999999999999999975

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.5e-67  Score=541.62  Aligned_cols=499  Identities=22%  Similarity=0.297  Sum_probs=394.8

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      ..|+.+.|.++|+++|+++|+++..+++.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus        13 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v   92 (540)
T PRK05857         13 PSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAI   92 (540)
T ss_pred             CcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeE
Confidence            44789999999999999999986544568999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-----CCcEEEecccccccc--cCHHHHHH-hhhhcCCCCCC
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-----GLPIIVLGEERIESA--INWSELIE-AADKAGNNFSN  186 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~  186 (544)
                      ++|++++++.+++.++++.++++++++++.........     ..+.+.++.......  ........ ...........
T Consensus        93 ~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  172 (540)
T PRK05857         93 AVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGSEDPL  172 (540)
T ss_pred             EEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecccccccccccccccccccccCCCCCCeE
Confidence            99999999999999999999999999987653221111     122333321110000  00000000 00111222334


Q ss_pred             CCCCCCCCCcCcceeeccHHHHHHHHHhhccc-c-CCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHH
Q 039837          187 DDDVKQTDLWISKGVMLTHRNLVANLCSTLFS-V-VPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELR  264 (544)
Q Consensus       187 ~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~  264 (544)
                      ...+||||||.||||.+||+++.++....... . ......+++.+..+|++|.+++. ..+.++..|+++++ .+.++.
T Consensus       173 ~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~-~~~~~l~~G~~~v~-~~~~~~  250 (540)
T PRK05857        173 AMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLW-WILTCLMHGGLCVT-GGENTT  250 (540)
T ss_pred             EEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHH-HHHHHhhcceeEEe-cCCChh
Confidence            67899999999999999999998765433211 0 01445678899999999999884 56778889998776 446788


Q ss_pred             HHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccc
Q 039837          265 AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCIT  344 (544)
Q Consensus       265 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~  344 (544)
                      .+++.++++++|+++++|+++..|++.......++++++.  +++||++++....+ +.+.+ ++++++.||+||++...
T Consensus       251 ~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~--~~~gG~~~~~~~~~-~~~~~-g~~i~~~YG~TE~~~~~  326 (540)
T PRK05857        251 SLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRL--VGYGGSRAIAADVR-FIEAT-GVRTAQVYGLSETGCTA  326 (540)
T ss_pred             HHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceE--EEEcCccCCchhHH-HHHHh-CCeeecccCCCcCCcee
Confidence            9999999999999999999999998876555566777777  99999999987775 55566 89999999999998644


Q ss_pred             cccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcC-----CCCCCceEEEecccccccccCChhhhhcccCCCCeee
Q 039837          345 LTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSL-----PSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLH  419 (544)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~-----~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~  419 (544)
                      .............+.+++|+|++|++++|+|++...++     +.|+.|||+++|+.++.|||++++.+.+.| .+|||+
T Consensus       327 ~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~  405 (540)
T PRK05857        327 LCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVN  405 (540)
T ss_pred             eecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCcee
Confidence            33221111101234578999999999999995333233     457899999999999999999999998888 689999


Q ss_pred             cCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCC-CHHH-
Q 039837          420 TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKE-SEDD-  497 (544)
Q Consensus       420 TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~-  497 (544)
                      |||+|+++++|++++.||.+|+||++|.+|+|.+||++|..||+|.+++|++.++...++.++++++..+..+. ..++ 
T Consensus       406 TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l  485 (540)
T PRK05857        406 TGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARAL  485 (540)
T ss_pred             ccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999988777788888776543221 1233 


Q ss_pred             ---HHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          498 ---IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       498 ---l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                         +.+.+++.++++++|..++++++||+|++||++|++|++.+.+
T Consensus       486 ~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~  531 (540)
T PRK05857        486 KHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATA  531 (540)
T ss_pred             HHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhh
Confidence               4445567799999999999999999999999999999998864

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=3.7e-66  Score=538.21  Aligned_cols=498  Identities=26%  Similarity=0.398  Sum_probs=418.5

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      ..|+.++|++.++.+|+++|+++. +++++||+||++++.++|++|++.|+++||+|+++++|+++++++++||+++|++
T Consensus        22 ~~~l~~~~~~~~~~~pd~~a~~~~-~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  100 (547)
T PRK06087         22 DASLADYWQQTARAMPDKIAVVDN-HGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAV  100 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEcC-CCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence            357999999999999999999875 3579999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccch-----HHHhh----cC-CC-cEEEecccc-cccccCHHHHHHhhh----
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPI-----YEKVK----GL-GL-PIIVLGEER-IESAINWSELIEAAD----  178 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-----~~~~~----~~-~~-~~~~~~~~~-~~~~~~~~~~~~~~~----  178 (544)
                      ++|+++.++.+++..+++.+++++++++...     .+.+.    .. .. .++.++... ......+..+.....    
T Consensus       101 ~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (547)
T PRK06087        101 SVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTT  180 (547)
T ss_pred             EeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhccCCcccC
Confidence            9999999999999999999999999997532     11111    11 11 222222111 111123333322111    


Q ss_pred             --hcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEE
Q 039837          179 --KAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVV  256 (544)
Q Consensus       179 --~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~  256 (544)
                        .........+.+||||||.||+|++||+++..........+  ++.++++++..+|++|.+|+...++.++..|++++
T Consensus       181 ~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~  258 (547)
T PRK06087        181 AITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL--NLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSV  258 (547)
T ss_pred             CCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc--CCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEE
Confidence              01112233567899999999999999999988877766655  67889999999999999998788899999999999


Q ss_pred             EcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEeccc
Q 039837          257 MMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYG  336 (544)
Q Consensus       257 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  336 (544)
                      +.+.+++..+++.++++++++++++|+++..+++........+++++.  +++||+++++++.+.+.+.  ++++++.||
T Consensus       259 ~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~--i~~gG~~~~~~~~~~~~~~--~~~l~~~YG  334 (547)
T PRK06087        259 LLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRF--FLCGGTTIPKKVARECQQR--GIKLLSVYG  334 (547)
T ss_pred             ecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEE--EEEcCCCCCHHHHHHHHHc--CCcEEEEec
Confidence            999899999999999999999999888888887765544556677777  9999999999999988764  899999999


Q ss_pred             CccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCC
Q 039837          337 LTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNG  416 (544)
Q Consensus       337 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~  416 (544)
                      +||++.+......   ........++|.|++++.++++| +++.+++.|+.|||+++|+.++.||+++++.+...++.++
T Consensus       335 ~TE~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g  410 (547)
T PRK06087        335 STESSPHAVVNLD---DPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEG  410 (547)
T ss_pred             ccccCCccccCCC---cchhhcCCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCC
Confidence            9999876654321   10122345789999999999999 6889999999999999999999999999999988887889


Q ss_pred             eeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCC-CCCCCH
Q 039837          417 WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP-NAKESE  495 (544)
Q Consensus       417 ~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~~~  495 (544)
                      ||+|||+++++++|.+++.||.+|+|+.+|.+++|.+||++|.++|+|.++++++.+++..|+.++++++..+ ....+.
T Consensus       411 ~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~  490 (547)
T PRK06087        411 WYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTL  490 (547)
T ss_pred             CcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCH
Confidence            9999999999999999999999999999999999999999999999999999999998888899999998875 344567


Q ss_pred             HHHHHHHH-hcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhhh
Q 039837          496 DDIMDFVA-SNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR  543 (544)
Q Consensus       496 ~~l~~~l~-~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~~  543 (544)
                      +++.+++. +.++.+++|..++++++||+|.+||++|++|++++.+++.
T Consensus       491 ~~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~~  539 (547)
T PRK06087        491 EEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRLT  539 (547)
T ss_pred             HHHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHhh
Confidence            88888875 5799999999999999999999999999999999988763

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2.6e-66  Score=540.39  Aligned_cols=494  Identities=26%  Similarity=0.399  Sum_probs=397.5

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF  115 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  115 (544)
                      .|+.++|.++|+.+|+++|+.+.  +.++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~   91 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIYG--KTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVL   91 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEC--CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEE
Confidence            47899999999999999999986  6899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-----------CCcEEEeccccc-----ccccCHHHHHHhhhh
Q 039837          116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-----------GLPIIVLGEERI-----ESAINWSELIEAADK  179 (544)
Q Consensus       116 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  179 (544)
                      +|+++.++.+++.++++.++++++|++++..+.+.+.           .++++.++....     .....+.++......
T Consensus        92 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (579)
T PLN03102         92 NPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRGEP  171 (579)
T ss_pred             eeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHHHhccCC
Confidence            9999999999999999999999999987765544321           123444432111     012234443322111


Q ss_pred             -----------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhh
Q 039837          180 -----------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCAT  248 (544)
Q Consensus       180 -----------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~  248 (544)
                                 ........+.+||||||.||+|++||+++..........+  .+...++++..+|++|..++. ..+.+
T Consensus       172 ~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~--~~~~~~~~l~~~pl~h~~g~~-~~~~~  248 (579)
T PLN03102        172 TPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW--EMGTCPVYLWTLPMFHCNGWT-FTWGT  248 (579)
T ss_pred             CCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc--CCCCCCeEEecCChhhhcchh-HHHHH
Confidence                       0112334567899999999999999999765544333333  556677889999999998874 45667


Q ss_pred             HhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCC
Q 039837          249 LRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPG  328 (544)
Q Consensus       249 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~  328 (544)
                      +..|+++++...+++..+++.|+++++|++.++|+++..|.+.........++++.  +++||+++++.+.+++.+ + +
T Consensus       249 ~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~--~~~gg~~~~~~~~~~~~~-~-g  324 (579)
T PLN03102        249 AARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVH--VLTGGSPPPAALVKKVQR-L-G  324 (579)
T ss_pred             HHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceE--EEECCCCCCHHHHHHHHH-c-C
Confidence            88899988888888899999999999999999999999998865433333344444  999999999999999876 5 8


Q ss_pred             CeEEecccCccccccccccCCCCC----CC-----CCCCCCcccccCCCceEEEEeCCCCCcCCC--CCCceEEEecccc
Q 039837          329 VQVQEAYGLTEHSCITLTYGDPAN----PS-----AGSKKNSVGFILPNLEVKFINPETGKSLPS--NTPGELCVRSQCV  397 (544)
Q Consensus       329 ~~i~~~yG~tE~~~~~~~~~~~~~----~~-----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~~~~~  397 (544)
                      +++++.||+||+++.++.......    +.     .....+..+.++++  ++++|.+.+++++.  ++.|||+++|+.+
T Consensus       325 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~~~~~~~GEl~v~g~~~  402 (579)
T PLN03102        325 FQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLAD--VDVKNKETQESVPRDGKTMGEIVIKGSSI  402 (579)
T ss_pred             CeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccc--eEEeccccccccCCCCCCceEEEEECcch
Confidence            899999999999865433211000    00     00112333444444  45666556777764  3679999999999


Q ss_pred             cccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCC
Q 039837          398 MQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEA  477 (544)
Q Consensus       398 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~  477 (544)
                      +.|||++++.+...| .+|||+|||+|++|+||++++.||.+|+|+++|++|+|.+||++|.++|.|.+++|++++++..
T Consensus       403 ~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~  481 (579)
T PLN03102        403 MKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTW  481 (579)
T ss_pred             hhhhcCChhhhHhhh-ccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccc
Confidence            999999999999888 6799999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CceeEEEEEeCCCCCC----------CHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          478 GEIPAACVVMNPNAKE----------SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       478 ~~~~~~~v~~~~~~~~----------~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ++.+++++++.++...          +..+++++++++|++|++|..++++++||+|++||++|++|++++.+.
T Consensus       482 ~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~~  555 (579)
T PLN03102        482 GETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKGL  555 (579)
T ss_pred             cceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHHHHHHHHh
Confidence            8899999988765432          356899999999999999999999999999999999999999987653

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.8e-66  Score=536.08  Aligned_cols=500  Identities=26%  Similarity=0.394  Sum_probs=422.7

Q ss_pred             CCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHH
Q 039837           29 AVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGI  108 (544)
Q Consensus        29 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~  108 (544)
                      +......+|+.+.+..+|+.+|+++|+.+.  ++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus        10 ~~~~~~~~n~~~~~~~~a~~~~~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~   87 (542)
T PRK07786         10 QPYLARRQNWVNQLARHALMQPDAPALRFL--GNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAA   87 (542)
T ss_pred             CCCcccccCHHHHHHHHHHHCCCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            334566789999999999999999999986  679999999999999999999999999999999999999999999999


Q ss_pred             HHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-----Cc-EEEecccccccccCHHHHHHhhhhc--
Q 039837          109 MAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----LP-IIVLGEERIESAINWSELIEAADKA--  180 (544)
Q Consensus       109 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~--  180 (544)
                      +++|++++|+++..+.+++..+++.+++++++++......+....     .. .+..++........+.++.......  
T Consensus        88 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (542)
T PRK07786         88 NMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLLAEAGPAHA  167 (542)
T ss_pred             HHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHhhccCCCCC
Confidence            999999999999999999999999999999999877655443221     22 2222221222234455443321111  


Q ss_pred             ----CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcc-cCccEEEEecchhHHHHHHHHHHhhHhccceE
Q 039837          181 ----GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEM-IGQVTTLGLIPFFHIYGITGICCATLRNKGKV  255 (544)
Q Consensus       181 ----~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~  255 (544)
                          .........+||||||.||+|.+||+++...+......+  +. ...++++...|++|.+|+ ..++.++..|+++
T Consensus       168 ~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~  244 (542)
T PRK07786        168 PVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN--GADINSDVGFVGVPLFHIAGI-GSMLPGLLLGAPT  244 (542)
T ss_pred             CCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc--CCCCCCceEEEecchHHHHHH-HHHHHHHHccCEE
Confidence                111233567899999999999999999998887766655  44 567899999999999988 6788899999999


Q ss_pred             EEcC--ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEe
Q 039837          256 VMMN--RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQE  333 (544)
Q Consensus       256 ~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~  333 (544)
                      ++.+  .+++..+++.++++++|++.++|+++..|++........   +.+|.+++||+++++++++.+.+.|++.++++
T Consensus       245 v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~---~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~  321 (542)
T PRK07786        245 VIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD---LALRVLSWGAAPASDTLLRQMAATFPEAQILA  321 (542)
T ss_pred             EEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC---cceEEEEECCCCCCHHHHHHHHHHcCCCeEEe
Confidence            9865  568999999999999999999999999998765433222   23445999999999999999999999999999


Q ss_pred             cccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccC
Q 039837          334 AYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTID  413 (544)
Q Consensus       334 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~  413 (544)
                      .||+||++.+.+....   .......+++|+|++++.++|+| +++..++.|+.|||+++|+.++.||+++++.+...| 
T Consensus       322 ~YG~tE~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f-  396 (542)
T PRK07786        322 AFGQTEMSPVTCMLLG---EDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF-  396 (542)
T ss_pred             eecccccccceEecCc---ccccccCCCccccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHh-
Confidence            9999999876543321   11223457899999999999999 678999999999999999999999999999998888 


Q ss_pred             CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCC-C
Q 039837          414 KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA-K  492 (544)
Q Consensus       414 ~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~  492 (544)
                      .++||+|||+++++++|.+++.||.+|+|+++|.++++.+||++|+++|.|.+++|++.+++..++.+++++++.+.. .
T Consensus       397 ~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  476 (542)
T PRK07786        397 AGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAA  476 (542)
T ss_pred             hCCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCC
Confidence            579999999999999999999999999999999999999999999999999999999998877788888888877643 3


Q ss_pred             CCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          493 ESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       493 ~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ...+++.++++++++++++|..++++++||+|++||++|++|+++|.+.
T Consensus       477 ~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~  525 (542)
T PRK07786        477 LTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGAC  525 (542)
T ss_pred             CCHHHHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhh
Confidence            5678999999999999999999999999999999999999999999765

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.1e-66  Score=536.62  Aligned_cols=497  Identities=26%  Similarity=0.434  Sum_probs=415.3

Q ss_pred             CCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           34 ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        34 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      ..+|+.+++.+.|+++|+++|+.+.  ++++||+||.+++.++|..|++.|+++||+|+++++|+++++++++||+++|+
T Consensus         5 ~~~~~~~~~~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~   82 (528)
T PRK07470          5 RVMNLAHFLRQAARRFPDRIALVWG--DRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGA   82 (528)
T ss_pred             cCCCHHHHHHHHHHHCCCceEEEEC--CccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCe
Confidence            4678999999999999999999986  68999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC---C---CcEEEecccccccccCHHHHHHhhh-------hc
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL---G---LPIIVLGEERIESAINWSELIEAAD-------KA  180 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  180 (544)
                      +++++++.++.+++.++++.++++.++++.+..+.....   .   ...+.+...  .....+..+.....       ..
T Consensus        83 ~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  160 (528)
T PRK07470         83 VWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGA--RAGLDYEALVARHLGARVANAAV  160 (528)
T ss_pred             EEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCC--cccccHHHHHhcCCCCCCCcccC
Confidence            999999999999999999999999999998765443221   1   122222211  11233444433210       01


Q ss_pred             CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcC-
Q 039837          181 GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN-  259 (544)
Q Consensus       181 ~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-  259 (544)
                      .......+.+||||||.||+|++||+++...+......+..+....++++..+|++|.+++. .++ .+..|++.++.+ 
T Consensus       161 ~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~-~~~~g~~~~~~~~  238 (528)
T PRK07470        161 DHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIH-QLC-QVARGAATVLLPS  238 (528)
T ss_pred             CCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHH-HHH-HHhcCceEEEecc
Confidence            12234457889999999999999999997655443332222457788999999999998874 344 566677766654 


Q ss_pred             -ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCc
Q 039837          260 -RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLT  338 (544)
Q Consensus       260 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  338 (544)
                       .+++..+++.++++++|++.++|+++..+.+........+++++.  +++||+++++.+.+++.+.+ +..+++.||+|
T Consensus       239 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~T  315 (528)
T PRK07470        239 ERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRY--VIYAGAPMYRADQKRALAKL-GKVLVQYFGLG  315 (528)
T ss_pred             cCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEE--EEEcCCCCCHHHHHHHHHHh-CcHHHHhCCCc
Confidence             468999999999999999999999999998876655566777776  99999999999999998888 78899999999


Q ss_pred             cccccccccCCC--C-CCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCC
Q 039837          339 EHSCITLTYGDP--A-NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKN  415 (544)
Q Consensus       339 E~~~~~~~~~~~--~-~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~  415 (544)
                      |++..+......  . ........+++|.|+++++++++| +++.+++.|+.|||+++|+.++.||+++++.+...| .+
T Consensus       316 E~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~~  393 (528)
T PRK07470        316 EVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RD  393 (528)
T ss_pred             ccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh-cC
Confidence            998765443210  0 000123457889999999999999 578999999999999999999999999999998877 68


Q ss_pred             CeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 039837          416 GWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE  495 (544)
Q Consensus       416 ~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  495 (544)
                      +||+|||+++++++|++++.||.+|++|++|.+++|.+||+.|.+++.|.+++|++.++...++.++++++..++...+.
T Consensus       394 ~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (528)
T PRK07470        394 GWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDE  473 (528)
T ss_pred             CcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999998887888888888877666788


Q ss_pred             HHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          496 DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       496 ~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      +++.+++++.|+++++|..++++++||+|++||++|+.|+++|+++
T Consensus       474 ~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~  519 (528)
T PRK07470        474 AELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEER  519 (528)
T ss_pred             HHHHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999998764

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=3.9e-66  Score=530.64  Aligned_cols=474  Identities=28%  Similarity=0.423  Sum_probs=406.8

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF  115 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  115 (544)
                      +|+.+.|.++|.++|+++|+.+.  ++.+||+||.++++++|++|.+.|+++||+|+++++|+.++++++|||+++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   79 (483)
T PRK03640          2 ETMPNWLKQRAFLTPDRTAIEFE--EKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVA   79 (483)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEE
Confidence            68999999999999999999987  6899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhh-------hhcCCCCCCCC
Q 039837          116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAA-------DKAGNNFSNDD  188 (544)
Q Consensus       116 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  188 (544)
                      +|+++..+.+++..++++++++.++++............             ..++++....       ...........
T Consensus        80 v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i  146 (483)
T PRK03640         80 VLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS-------------VKFAELMNGPKEEAEIQEEFDLDEVATI  146 (483)
T ss_pred             EecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc-------------ccHHHHhhcccccCCCCCCCCCCCeEEE
Confidence            999999999999999999999999998765544322110             0011111110       01112233356


Q ss_pred             CCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHH
Q 039837          189 DVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLD  268 (544)
Q Consensus       189 ~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~  268 (544)
                      .+||||||.||+|++||+++...+......+  ++..+++++..+|++|.+++ ..++.++..|+++++.+..++..+++
T Consensus       147 ~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~  223 (483)
T PRK03640        147 MYTSGTTGKPKGVIQTYGNHWWSAVGSALNL--GLTEDDCWLAAVPIFHISGL-SILMRSVIYGMRVVLVEKFDAEKINK  223 (483)
T ss_pred             EeCCCcCCCCcEEEEecHHHHHHHHHHHHhc--CCCcCcEEEEecCHHHHHHH-HHHHHHHhcCCEEEecCCCCHHHHHH
Confidence            7899999999999999999988776666555  77899999999999999988 45788899999999999889999999


Q ss_pred             HHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccC
Q 039837          269 ALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYG  348 (544)
Q Consensus       269 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~  348 (544)
                      .++++++|++.++|+++..|++..... ....+++.  +++||+++++.+.+.+.+.  ++++++.||+||++..+....
T Consensus       224 ~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~--~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~  298 (483)
T PRK03640        224 LLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRC--MLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQIVTLS  298 (483)
T ss_pred             HHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceE--EEEcCCCCCHHHHHHHHHh--CCCeeeeeccCcccccccccC
Confidence            999999999999999999998754322 22345555  9999999999999998875  899999999999876543322


Q ss_pred             CCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcC
Q 039837          349 DPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDD  428 (544)
Q Consensus       349 ~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~  428 (544)
                      .   .......+++|+|++++++++.|+  +.+++.|+.|||+++|+.++.||+++++.+...| .++||+|||++++++
T Consensus       299 ~---~~~~~~~~~vG~p~~~~~~~i~~~--~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~  372 (483)
T PRK03640        299 P---EDALTKLGSAGKPLFPCELKIEKD--GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDE  372 (483)
T ss_pred             c---ccccccCCCcccccCCcEEEEecC--CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcC
Confidence            1   112345678999999999999883  4789999999999999999999999999998888 689999999999999


Q ss_pred             CCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccC
Q 039837          429 DGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVAT  508 (544)
Q Consensus       429 ~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~  508 (544)
                      ||.+++.||.+|++|.+|.++++.+||+.+.++++|.++++++.+++..+..++++++..  ...+.+++.+++++.|++
T Consensus       373 ~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~l~~  450 (483)
T PRK03640        373 EGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS--GEVTEEELRHFCEEKLAK  450 (483)
T ss_pred             CCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC--CCCCHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999998887777888877743  456788999999999999


Q ss_pred             CCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          509 YKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       509 ~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      +++|..+++++++|+|++||++|++|++++++
T Consensus       451 ~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        451 YKVPKRFYFVEELPRNASGKLLRHELKQLVEE  482 (483)
T ss_pred             CCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence            99999999999999999999999999999864

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-66  Score=545.15  Aligned_cols=499  Identities=18%  Similarity=0.253  Sum_probs=390.5

Q ss_pred             CCCCCCHHHHHHhhhhhcCCceEEEEccCC---ceeeHHHHHHHHHHHHHHHHHc---CCCCC-----------CEEEEE
Q 039837           32 VPENVTLPDFVLQDAELYADKVAFVEAVSG---KAYTYAQVARDTRGFAKALRSL---GLRKG-----------QVVIVV   94 (544)
Q Consensus        32 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~---~~~Ty~el~~~~~~la~~L~~~---Gi~~g-----------d~V~i~   94 (544)
                      .....|+.++|.++++++|+++|+++...+   +.+||+||.+++.++|++|.+.   |+++|           |+|+|+
T Consensus        57 ~~~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~  136 (746)
T PTZ00342         57 LYVYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLY  136 (746)
T ss_pred             ccccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEE
Confidence            344679999999999999999999864222   6899999999999999999974   99999           999999


Q ss_pred             cCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-----CCc-EEEecccccc---
Q 039837           95 LPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-----GLP-IIVLGEERIE---  165 (544)
Q Consensus        95 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~~~~~---  165 (544)
                      ++|+++|+++.+||+++|++.||+++.++.+++.++++++++++++++.+..+.+...     .++ ++.++.....   
T Consensus       137 ~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  216 (746)
T PTZ00342        137 GSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEI  216 (746)
T ss_pred             cCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccc
Confidence            9999999999999999999999999999999999999999999999987766655432     122 3334321100   


Q ss_pred             ----------------cc-------------------------------cC-----------------HHHHHHhh----
Q 039837          166 ----------------SA-------------------------------IN-----------------WSELIEAA----  177 (544)
Q Consensus       166 ----------------~~-------------------------------~~-----------------~~~~~~~~----  177 (544)
                                      ..                               ..                 ++++....    
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  296 (746)
T PTZ00342        217 NINKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNY  296 (746)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcccCC
Confidence                            00                               00                 11111100    


Q ss_pred             --hhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceE
Q 039837          178 --DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV  255 (544)
Q Consensus       178 --~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~  255 (544)
                        ........+.+.+||||||.||||++||+++.+.+..............+++++.+|++|++++. ..+.++..|+++
T Consensus       297 ~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~-~~~~~l~~G~~i  375 (746)
T PTZ00342        297 KIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERV-IAYLSFMLGGTI  375 (746)
T ss_pred             CCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHH-HHHHHHHcCCEE
Confidence              01112233457899999999999999999999887655432111123458899999999999985 566789999999


Q ss_pred             EEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcC--------CCCCc-------------------------------
Q 039837          256 VMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKD--------PIVDE-------------------------------  296 (544)
Q Consensus       256 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------~~~~~-------------------------------  296 (544)
                      ++.+. ++..+++.|+++++|+++++|.++..+.+.        +....                               
T Consensus       376 ~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~k  454 (746)
T PTZ00342        376 NIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSK  454 (746)
T ss_pred             EEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence            98764 789999999999999999999999888652        10000                               


Q ss_pred             ---cCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccC-CCceEE
Q 039837          297 ---FDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFIL-PNLEVK  372 (544)
Q Consensus       297 ---~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~  372 (544)
                         ...+++|.  +++||+++++++.+.|...+ ++.++++||+||+++.++...    . .....+++|.|+ |+++++
T Consensus       455 ir~~lg~~lr~--~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~~----~-~~~~~gsvG~p~~pg~e~k  526 (746)
T PTZ00342        455 IKDKVNPNLEV--ILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQH----A-DDNNTESIGGPISPNTKYK  526 (746)
T ss_pred             HHHhhCCCeEE--EEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeecc----C-CCCCcccccCcCCCcEEEE
Confidence               00134455  99999999999999999888 899999999999976655432    1 345678999998 999999


Q ss_pred             EEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceee-cceeeCh
Q 039837          373 FINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAP  451 (544)
Q Consensus       373 i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~-~G~~v~~  451 (544)
                      |+|.+++.....+..|||+++||+++.|||++|+.|.+.|+.+|||+|||+|++|+||++++.||.+|+||+ +|++|+|
T Consensus       527 i~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p  606 (746)
T PTZ00342        527 VRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIET  606 (746)
T ss_pred             EecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEch
Confidence            998554444455567999999999999999999999999988999999999999999999999999999996 7999999


Q ss_pred             HHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCC--------C------CC---CH-----------HHHHHH--
Q 039837          452 AELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN--------A------KE---SE-----------DDIMDF--  501 (544)
Q Consensus       452 ~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--------~------~~---~~-----------~~l~~~--  501 (544)
                      .+||++|.++|.|.+++|++.+.   ...++|+|++...        .      ..   +.           .++.+.  
T Consensus       607 ~eIE~~l~~~p~V~~~~VvG~~~---~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~  683 (746)
T PTZ00342        607 DMLNNLYSQISFINFCVVYGDDS---MDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVK  683 (746)
T ss_pred             HHHHHHHhcCCCccEEEEEccCC---ccccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHH
Confidence            99999999999999999998632   2468888887641        0      00   11           111222  


Q ss_pred             -----H--HhcccCCCceeEEEEee-cC----CCCCCcccchHHHHHHHHHhhh
Q 039837          502 -----V--ASNVATYKKVRVLHFVD-GI----PKSHSGKIMRRILKDKMLEKMR  543 (544)
Q Consensus       502 -----l--~~~l~~~~~p~~~~~~~-~~----P~t~~GKi~r~~l~~~~~~~~~  543 (544)
                           +  +..|+.+.++..|+.+. .|    -+|++.|++|..+.+.|+..|+
T Consensus       684 ~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~~i~  737 (746)
T PTZ00342        684 GKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAFFID  737 (746)
T ss_pred             HHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHHHHH
Confidence                 2  23588999999888873 22    3899999999999999985553

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.8e-66  Score=529.57  Aligned_cols=483  Identities=25%  Similarity=0.358  Sum_probs=404.9

Q ss_pred             HhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCC
Q 039837           43 LQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTA  122 (544)
Q Consensus        43 ~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~  122 (544)
                      +.+|+.+||++|+.+..++..+||+||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|+++.+
T Consensus         2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~   81 (488)
T PRK09088          2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL   81 (488)
T ss_pred             chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence            45678899999998754578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceee
Q 039837          123 HASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVM  202 (544)
Q Consensus       123 ~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~  202 (544)
                      +.+++..++++++++++++++.....    ....+.++... .........  ..............+||||||.||+|.
T Consensus        82 ~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~~TSGTTG~PK~v~  154 (488)
T PRK09088         82 SASELDALLQDAEPRLLLGDDAVAAG----RTDVEDLAAFI-ASADALEPA--DTPSIPPERVSLILFTSGTSGQPKGVM  154 (488)
T ss_pred             CHHHHHHHHHhCCCCEEEEcchhhcc----cccccchhhhh-hhccccccc--cCCCCCCCCceEEEeCCCCCCCCcEEE
Confidence            99999999999999999997654321    00000000000 000000000  000111223346788999999999999


Q ss_pred             ccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHH--HcCceeeec
Q 039837          203 LTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI--THEVTFAPI  280 (544)
Q Consensus       203 ~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~--~~~~t~~~~  280 (544)
                      +||+++...+.......  .....+++++.+|++|.+|+...++.++..|+++++.+.+++..++..+.  ++++|++.+
T Consensus       155 ~s~~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  232 (488)
T PRK09088        155 LSERNLQQTAHNFGVLG--RVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFC  232 (488)
T ss_pred             EehHHHHHHHHHHHHhh--CCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEee
Confidence            99999988777666554  56788999999999999999888889999999999988888888888886  478999999


Q ss_pred             chHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCC
Q 039837          281 VPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKN  360 (544)
Q Consensus       281 ~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~  360 (544)
                      +|+++..+.+........+++++.  +++||++++.+..+.+.+.  ++++++.||+||++.+.......  .......+
T Consensus       233 ~P~~~~~l~~~~~~~~~~~~~l~~--~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~--~~~~~~~~  306 (488)
T PRK09088        233 VPQMAQAFRAQPGFDAAALRHLTA--LFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDC--DVIRAKAG  306 (488)
T ss_pred             HHHHHHHHHhCcCcCccccccceE--EEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCCCc--ccccccCC
Confidence            999999998765444445667777  9999999999998888865  78999999999998654322110  11123557


Q ss_pred             cccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCC
Q 039837          361 SVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKE  440 (544)
Q Consensus       361 ~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d  440 (544)
                      ++|.|.++++++|+| +++..++.|+.|||+++|++++.||+++++.+...++.+|||+|||+|+++++|.+++.||.+|
T Consensus       307 ~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d  385 (488)
T PRK09088        307 AAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKD  385 (488)
T ss_pred             ccccCCCCcEEEEEC-CCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccc
Confidence            899999999999999 6789999999999999999999999999999988888899999999999999999999999999


Q ss_pred             ceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeec
Q 039837          441 LIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDG  520 (544)
Q Consensus       441 ~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~  520 (544)
                      +|+.+|.+++|.+||++|+++|+|.+++|++.++...|+..++++++.++...+.+++.++++++++++++|..++++++
T Consensus       386 ~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~  465 (488)
T PRK09088        386 MFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKHLRLVDA  465 (488)
T ss_pred             eEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCCEEEEccc
Confidence            99999999999999999999999999999999887778888899888776666788999999999999999999999999


Q ss_pred             CCCCCCcccchHHHHHHHHHh
Q 039837          521 IPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       521 ~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ||+|++||++|++|++++.+.
T Consensus       466 iP~t~~gKi~r~~l~~~~~~~  486 (488)
T PRK09088        466 LPRTASGKLQKARLRDALAAG  486 (488)
T ss_pred             CCCCCCCceeHHHHHHHHHhc
Confidence            999999999999999988653

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.6e-66  Score=536.99  Aligned_cols=496  Identities=32%  Similarity=0.552  Sum_probs=414.5

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF  115 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  115 (544)
                      .++.+.|.+.+..+|+++|+++.  ++.+||+||.+++.++|++|.+.|+++||+|+++++|+.++++++|||+++|+++
T Consensus        24 ~~~~~~~~~~a~~~p~~~a~~~~--~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~  101 (563)
T PRK06710         24 QPLHKYVEQMASRYPEKKALHFL--GKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIV  101 (563)
T ss_pred             ccHHHHHHHHHHHCCCceEEEec--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEE
Confidence            58999999999999999999986  7899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC----CcEEEecc-ccc--------------------------
Q 039837          116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG----LPIIVLGE-ERI--------------------------  164 (544)
Q Consensus       116 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~----~~~~~~~~-~~~--------------------------  164 (544)
                      +|++|..+.+++.++++.++++++++++.....+....    ...+.+.. ...                          
T Consensus       102 vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (563)
T PRK06710        102 VQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSES  181 (563)
T ss_pred             eccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhccccccccccccc
Confidence            99999999999999999999999999876544332211    11111100 000                          


Q ss_pred             ccccCHHHHHHhhhh------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHH
Q 039837          165 ESAINWSELIEAADK------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHI  238 (544)
Q Consensus       165 ~~~~~~~~~~~~~~~------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  238 (544)
                      .....+.........      ..........+||||||.||+|.+||+++..........+.......+++++.+|++|.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~  261 (563)
T PRK06710        182 ETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHV  261 (563)
T ss_pred             chhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHH
Confidence            000011111110000      00112335679999999999999999999765433322211112345688999999999


Q ss_pred             HHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhH
Q 039837          239 YGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDL  318 (544)
Q Consensus       239 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~  318 (544)
                      +|+...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++........+++++.  +++||+++++++
T Consensus       262 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--v~~gg~~~~~~~  339 (563)
T PRK06710        262 YGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRA--CISGSAPLPVEV  339 (563)
T ss_pred             HHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhh--eeeCCCcCCHHH
Confidence            998777778999999999988889999999999999999999999999998866555556677777  999999999999


Q ss_pred             HHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEeccccc
Q 039837          319 LSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVM  398 (544)
Q Consensus       319 ~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~  398 (544)
                      .+++.+.+ ++.+++.||+||++.+.....    .......+++|.|.+++.++++|++++.+++.|+.|||+++|+.++
T Consensus       340 ~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~  414 (563)
T PRK06710        340 QEKFETVT-GGKLVEGYGLTESSPVTHSNF----LWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIM  414 (563)
T ss_pred             HHHHHHhh-CCCEecccccccCccccccCc----ccccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccc
Confidence            99999988 889999999999987554322    1122345689999999999999988899999999999999999999


Q ss_pred             ccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCC
Q 039837          399 QGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAG  478 (544)
Q Consensus       399 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~  478 (544)
                      .||+++++.+...+ .+|||+|||+++++++|.+++.||.+|+|+++|.+|+|.+||++|.++|.|.+++|++.++...|
T Consensus       415 ~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g  493 (563)
T PRK06710        415 KGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRG  493 (563)
T ss_pred             hhhhCChHHHhhhc-ccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcC
Confidence            99999999998877 68999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             ceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          479 EIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       479 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      +.++++++..++...+.+++.++++++++.+++|..++++++||+|.+||++|++|++++..+
T Consensus       494 ~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~~  556 (563)
T PRK06710        494 ETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKRK  556 (563)
T ss_pred             ceeEEEEEECCCCCCCHHHHHHHHHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHhhc
Confidence            999999998887777889999999999999999999999999999999999999999988654

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.1e-67  Score=551.60  Aligned_cols=498  Identities=22%  Similarity=0.336  Sum_probs=397.2

Q ss_pred             CCCCCCCHHHHHHhhhhhcCCceEEEEcc-------CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHH
Q 039837           31 PVPENVTLPDFVLQDAELYADKVAFVEAV-------SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGI  103 (544)
Q Consensus        31 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~-------~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~  103 (544)
                      ..+...|+.+.|.++|+.+|+++|+++..       ..+.+||+||.++++++|++|.+. +++||+|+++++|++++++
T Consensus        16 ~~~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~   94 (631)
T PRK07769         16 RFPPNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLI   94 (631)
T ss_pred             cccccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHH
Confidence            34556799999999999999999998631       125799999999999999999987 8999999999999999999


Q ss_pred             HHHHHHHhcCeeecC-CCCCC--HHHHHHHHHhcCceEEEeccchHHHhhcC----C----CcEEEecccccccccCHHH
Q 039837          104 VALGIMAAGGVFSGA-NPTAH--ASELKKQVDAADAKLIVSYAPIYEKVKGL----G----LPIIVLGEERIESAINWSE  172 (544)
Q Consensus       104 ~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~  172 (544)
                      ++|||+++|++++|+ ++..+  .+++.++++.++++++|++++..+.+...    .    ..++.++...  ...  ..
T Consensus        95 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~  170 (631)
T PRK07769         95 AFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVP--DEV--GA  170 (631)
T ss_pred             HHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccccc--ccc--cc
Confidence            999999999999999 55554  67899999999999999987765443221    1    1222222100  000  00


Q ss_pred             HHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhcc
Q 039837          173 LIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNK  252 (544)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G  252 (544)
                      .. ............+.+||||||.||||++||+++...+......+  ++..+++++.++|++|.+|+.. ++.++..|
T Consensus       171 ~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~Pl~h~~gl~~-~~~~~~~G  246 (631)
T PRK07769        171 TW-VPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL--EGQEGDRGVSWLPFFHDMGLIT-VLLPALLG  246 (631)
T ss_pred             cc-CCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc--CCCCcceEEEeCCCcCchhhHH-HHHHHhhC
Confidence            00 00011223334678999999999999999999998877776666  6778899999999999999854 45566778


Q ss_pred             ceEEEcCc--c--CHHHHHHHHHHcCc---eeeecchHHHHHHhcCC---C--CCccCccccccccEEEecCCCCHhHHH
Q 039837          253 GKVVMMNR--F--ELRAFLDALITHEV---TFAPIVPPIILSLVKDP---I--VDEFDLSKLQLRAVMTAAAPLAPDLLS  320 (544)
Q Consensus       253 ~~~~~~~~--~--~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~~~---~--~~~~~~~~l~~~~v~~~G~~~~~~~~~  320 (544)
                      +++++..+  +  ++..+++.+.++++   +++..+|+++..++...   .  ....++++++.  +++||+++++++.+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~--~~~gg~~l~~~~~~  324 (631)
T PRK07769        247 HYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKG--LLNGSEPVSPASMR  324 (631)
T ss_pred             CeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheee--EEeccCCCCHHHHH
Confidence            88887753  3  78899999999876   78999999887766421   1  11346677777  99999999999999


Q ss_pred             HHHhhcC-----CCeEEecccCccccccccccCCCCCC----------------------CCCCCCCcccccCCCceEEE
Q 039837          321 SFEKKFP-----GVQVQEAYGLTEHSCITLTYGDPANP----------------------SAGSKKNSVGFILPNLEVKF  373 (544)
Q Consensus       321 ~~~~~~~-----~~~i~~~yG~tE~~~~~~~~~~~~~~----------------------~~~~~~~~~G~~~~~~~~~i  373 (544)
                      +|.+.|+     ...+++.||+||++..++........                      .......++|+|.+++.++|
T Consensus       325 ~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~i  404 (631)
T PRK07769        325 KFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVI  404 (631)
T ss_pred             HHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEE
Confidence            9999872     34699999999987655543211100                      00112357899999999999


Q ss_pred             EeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccC-----------------CCCeeecCceEEEcCCCcEEEEe
Q 039837          374 INPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTID-----------------KNGWLHTGDIGYIDDDGDIFIVD  436 (544)
Q Consensus       374 ~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------------~~~~~~TGD~~~~~~~g~~~~~G  436 (544)
                      +|++++.+++.|+.|||+++||+++.|||++++.|.+.|.                 .++||+|||+|++ .+|+++++|
T Consensus       405 vd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~-~dG~l~i~G  483 (631)
T PRK07769        405 VDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVY-FDGELYITG  483 (631)
T ss_pred             EcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccE-ECCEEEEEc
Confidence            9977899999999999999999999999999999988773                 2489999999999 599999999


Q ss_pred             ecCCceeecceeeChHHHHHHHhc-CCCccc--eEEEeecC-------------------CCCCceeEEEEEeCCCC-CC
Q 039837          437 RIKELIKYKGFQVAPAELEAILLT-HPSVED--AAVVSLPD-------------------EEAGEIPAACVVMNPNA-KE  493 (544)
Q Consensus       437 R~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~--~~v~~~~~-------------------~~~~~~~~~~v~~~~~~-~~  493 (544)
                      |.||+||++|++|+|.+||++|.+ ||.|.+  ++|+++++                   +..++.+++++++.++. ..
T Consensus       484 R~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~  563 (631)
T PRK07769        484 RVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKL  563 (631)
T ss_pred             ccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccccc
Confidence            999999999999999999999996 899998  88998887                   45778899999988763 56


Q ss_pred             CHHHHHHHHHhcccC-CC-ceeEEEEee--cCCCCCCcccchHHHHHHHHH
Q 039837          494 SEDDIMDFVASNVAT-YK-KVRVLHFVD--GIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       494 ~~~~l~~~l~~~l~~-~~-~p~~~~~~~--~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      +.++|.++++++|.. ++ .|..+++++  +||+|++|||+|++|+++|.+
T Consensus       564 ~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~  614 (631)
T PRK07769        564 DPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLD  614 (631)
T ss_pred             cHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHc
Confidence            788999999999985 56 488888886  799999999999999998864

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.9e-66  Score=530.61  Aligned_cols=480  Identities=22%  Similarity=0.331  Sum_probs=407.0

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCccHHHHHHHHHHh
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSL-GLRKGQVVIVVLPNVAEYGIVALGIMAA  111 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gi~~gd~V~i~~~n~~~~~~~~lA~~~~  111 (544)
                      +...++.++|.++|.  ++++++++.  ++++||.||.+++.++|++|++. |++++++|+++++|+++++++++||+++
T Consensus         2 ~~~~~~~~~l~~~a~--~~~~a~~~~--~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~   77 (529)
T PRK07867          2 SSAPTVAELLLPLAE--DDDRGLYFE--DSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALS   77 (529)
T ss_pred             CccccHHHHHHHhcc--cCCceEEEC--CcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence            455689999998885  789999886  68999999999999999999997 8999999999999999999999999999


Q ss_pred             cCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC--CcEEEecccccccccCHHHHHHhhh-------hcCC
Q 039837          112 GGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG--LPIIVLGEERIESAINWSELIEAAD-------KAGN  182 (544)
Q Consensus       112 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  182 (544)
                      |++++|+++.++.+++.++++++++++++++++....+....  ...+.++.      ..+.+......       ....
T Consensus        78 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~  151 (529)
T PRK07867         78 GIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVDS------PAWADELAAHRDAEPPFRVADP  151 (529)
T ss_pred             CCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhccCceEEEecc------ccHHHHhcccCCCCCCcccCCc
Confidence            999999999999999999999999999999988776555432  22222221      11222221100       0112


Q ss_pred             CCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccC
Q 039837          183 NFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFE  262 (544)
Q Consensus       183 ~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~  262 (544)
                      .....+.+||||||.||||++||+++..........+  ++...|+++..+|++|.+++...++.++..|+++++.+.++
T Consensus       152 ~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~  229 (529)
T PRK07867        152 DDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF--GLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFS  229 (529)
T ss_pred             cceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh--CCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCC
Confidence            2234567999999999999999999998888777766  67889999999999999998777888999999999988889


Q ss_pred             HHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccc
Q 039837          263 LRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSC  342 (544)
Q Consensus       263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~  342 (544)
                      +..+++.++++++|++.++|+.+..++..........++++   +++||+.+++.. .+|.+.+ ++++++.||+||++.
T Consensus       230 ~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr---~~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~TE~~~  304 (529)
T PRK07867        230 ASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLR---IVYGNEGAPGDI-ARFARRF-GCVVVDGFGSTEGGV  304 (529)
T ss_pred             HHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceE---EEecCCCChHHH-HHHHHHh-CCcEEEeeccccccc
Confidence            99999999999999999999999998876543222223443   346888887765 6777778 889999999999986


Q ss_pred             cccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCC------------CceEEE-ecccccccccCChhhhh
Q 039837          343 ITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNT------------PGELCV-RSQCVMQGYYNNEEETA  409 (544)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~------------~Gel~v-~~~~~~~gy~~~~~~~~  409 (544)
                      .....       .....+++|.|+++  ++++|++++.+++.|+            .|||++ +|++++.||+++++.+.
T Consensus       305 ~~~~~-------~~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~  375 (529)
T PRK07867        305 AITRT-------PDTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADA  375 (529)
T ss_pred             ccccC-------CCCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhh
Confidence            54422       12245678999999  6778877788888888            999999 99999999999999998


Q ss_pred             cccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCC
Q 039837          410 RTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP  489 (544)
Q Consensus       410 ~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  489 (544)
                      ..+ .+|||+|||+++++++|.+++.||.+|+|+++|++++|.+||++|.++|+|.+++|++++++..|+.+++++++.+
T Consensus       376 ~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~  454 (529)
T PRK07867        376 ERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAP  454 (529)
T ss_pred             hhh-cCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECC
Confidence            888 5899999999999999999999999999999999999999999999999999999999999988999999999988


Q ss_pred             CCCCCHHHHHHHHHhc--ccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          490 NAKESEDDIMDFVASN--VATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       490 ~~~~~~~~l~~~l~~~--l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      +...+.+++.++++++  |+.+++|..++++++||+|.+||++|++|+++..
T Consensus       455 ~~~~~~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~  506 (529)
T PRK07867        455 GAKFDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGV  506 (529)
T ss_pred             CCCCCHHHHHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcC
Confidence            7778889999999875  9999999999999999999999999999999764

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=8.1e-66  Score=543.81  Aligned_cols=498  Identities=17%  Similarity=0.208  Sum_probs=396.0

Q ss_pred             CCCCHHHHHH-hhhhhcCCceEEEEccCC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHH
Q 039837           34 ENVTLPDFVL-QDAELYADKVAFVEAVSG------KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVAL  106 (544)
Q Consensus        34 ~~~~l~~~l~-~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~l  106 (544)
                      ...|+.+.+. ++++.+|+++|+++..++      +++||+||.+++.++|++|++.|+++||+|+++++|++++++++|
T Consensus       172 ~~ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~L  251 (728)
T PLN03052        172 AVLNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYL  251 (728)
T ss_pred             CEeEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3456766444 455678999999875432      479999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHH---------Hhhc-CCCcEEEecccc-------cccccC
Q 039837          107 GIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYE---------KVKG-LGLPIIVLGEER-------IESAIN  169 (544)
Q Consensus       107 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~-~~~~~~~~~~~~-------~~~~~~  169 (544)
                      ||+++|++++|+++.++.+++.+++++++++++|+.+....         .+.. .....+++....       ......
T Consensus       252 A~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~  331 (728)
T PLN03052        252 AIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKLREGDMS  331 (728)
T ss_pred             HHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCccccccccCCcc
Confidence            99999999999999999999999999999999999865321         1111 111222222110       012334


Q ss_pred             HHHHHHhhhh-----------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHH
Q 039837          170 WSELIEAADK-----------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHI  238 (544)
Q Consensus       170 ~~~~~~~~~~-----------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  238 (544)
                      |+++......           ........+.+||||||.||||+++|.+++..+......+  ++.++|+++...|+.|+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~--~l~~~d~~~~~~~l~w~  409 (728)
T PLN03052        332 WDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL--DIRKGDIVCWPTNLGWM  409 (728)
T ss_pred             HHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc--CCCCCcEEEECCCcHHH
Confidence            5554432100           0112334578999999999999999999877665544444  67889999999999999


Q ss_pred             HHHHHHHHhhHhccceEEEcCc-cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHh
Q 039837          239 YGITGICCATLRNKGKVVMMNR-FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPD  317 (544)
Q Consensus       239 ~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~  317 (544)
                      ++. ..++.+|..|+++++.+. .++..+++.++++++|++.++|+++..|.+.......+++++|.  ++++|++++++
T Consensus       410 ~g~-~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~--i~s~Ge~l~~~  486 (728)
T PLN03052        410 MGP-WLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRC--FGSTGEASSVD  486 (728)
T ss_pred             hHH-HHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeE--EEecCCCCCHH
Confidence            997 567899999999999874 45567999999999999999999999998765445667888777  99999999999


Q ss_pred             HHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCC--CceEEEecc
Q 039837          318 LLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNT--PGELCVRSQ  395 (544)
Q Consensus       318 ~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~--~Gel~v~~~  395 (544)
                      ...++.+.++...+++.||+||+++.+....    .......+++|.|.+|++++|+| ++|++++.|+  .|||++.++
T Consensus       487 ~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~----~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~  561 (728)
T PLN03052        487 DYLWLMSRAGYKPIIEYCGGTELGGGFVTGS----LLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPL  561 (728)
T ss_pred             HHHHHHHhcCCCCeEeeccChhhCcccccCC----CCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCC
Confidence            9888888764467999999999986544322    11223457899999999999999 6899999885  599999865


Q ss_pred             c--ccccccCChhhhhcccC------CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHh-cCCCccc
Q 039837          396 C--VMQGYYNNEEETARTID------KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILL-THPSVED  466 (544)
Q Consensus       396 ~--~~~gy~~~~~~~~~~~~------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~  466 (544)
                      .  ...+|+++. .+...|.      +..||+|||+++++++|+++++||+||+||++|++|++.|||++|. .||.|.+
T Consensus       562 ~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~e  640 (728)
T PLN03052        562 MFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLE  640 (728)
T ss_pred             CCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcce
Confidence            3  334666653 3333442      2338999999999999999999999999999999999999999995 7899999


Q ss_pred             eEEEeecCCCCC-ceeEEEEEeC--CCCCCCHHHHHHH----HHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          467 AAVVSLPDEEAG-EIPAACVVMN--PNAKESEDDIMDF----VASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       467 ~~v~~~~~~~~~-~~~~~~v~~~--~~~~~~~~~l~~~----l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      ++|++++++..| +.+++++++.  ++...+.++|+++    ++++|+++++|..|+++++||+|.+||++|+.|++++.
T Consensus       641 aaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~  720 (728)
T PLN03052        641 TAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLA  720 (728)
T ss_pred             EEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHHHHHHH
Confidence            999999988766 7899999987  5555565666655    56778889999999999999999999999999999987


Q ss_pred             Hhh
Q 039837          540 EKM  542 (544)
Q Consensus       540 ~~~  542 (544)
                      +..
T Consensus       721 ~~~  723 (728)
T PLN03052        721 QEL  723 (728)
T ss_pred             hhh
Confidence            654

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=7e-66  Score=532.87  Aligned_cols=491  Identities=26%  Similarity=0.401  Sum_probs=412.0

Q ss_pred             CCCCHHHHHHhhhhhcCCceEEEEcc---CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHH
Q 039837           34 ENVTLPDFVLQDAELYADKVAFVEAV---SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA  110 (544)
Q Consensus        34 ~~~~l~~~l~~~a~~~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~  110 (544)
                      ...|+.++++++|+++|+++|+.+..   +.+.+||+||.++++++|++|.+.|+++||+|+++++|+.+++++++||++
T Consensus         5 ~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~   84 (517)
T PRK08008          5 GGQHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAK   84 (517)
T ss_pred             ccccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            34689999999999999999998642   126899999999999999999999999999999999999999999999999


Q ss_pred             hcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC------CCcEE-Eeccc--ccccccCHHHHHHhhhh--
Q 039837          111 AGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL------GLPII-VLGEE--RIESAINWSELIEAADK--  179 (544)
Q Consensus       111 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~~~-~~~~~--~~~~~~~~~~~~~~~~~--  179 (544)
                      +|++++++++..+.+++.++++++++++++++.+....+.+.      ..+.+ ..+..  .......++........  
T Consensus        85 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (517)
T PRK08008         85 IGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQPATL  164 (517)
T ss_pred             cCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCCccc
Confidence            999999999999999999999999999999988766554332      12222 22211  11122333333221110  


Q ss_pred             -----cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccce
Q 039837          180 -----AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGK  254 (544)
Q Consensus       180 -----~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~  254 (544)
                           ..........+||||||.||+|++||+++...........  .+..+++++..+|++|..+....++.++..|++
T Consensus       165 ~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~  242 (517)
T PRK08008        165 CYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC--ALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGAT  242 (517)
T ss_pred             cccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc--CCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcE
Confidence                 0112234567999999999999999999986544333222  467889999999999988877888999999999


Q ss_pred             EEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEec
Q 039837          255 VVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEA  334 (544)
Q Consensus       255 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  334 (544)
                      +++.+++++..+++.++++++|++.++|+++..++............++.  +.++ .+++++....|.+.+ ++++++.
T Consensus       243 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~--~~~~-~~~~~~~~~~~~~~~-~~~~~~~  318 (517)
T PRK08008        243 FVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLRE--VMFY-LNLSDQEKDAFEERF-GVRLLTS  318 (517)
T ss_pred             EEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcccccccccee--eEEe-cCCCHHHHHHHHHHh-CCeEEee
Confidence            99999899999999999999999999999999988765433333344444  6665 478999999999988 8999999


Q ss_pred             ccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEec---ccccccccCChhhhhcc
Q 039837          335 YGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRS---QCVMQGYYNNEEETART  411 (544)
Q Consensus       335 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~---~~~~~gy~~~~~~~~~~  411 (544)
                      ||+||++..+....    ........++|.|+++++++++| +++.+++.|+.|||+++|   ++++.|||++++.+.+.
T Consensus       319 YG~tE~~~~~~~~~----~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~  393 (517)
T PRK08008        319 YGMTETIVGIIGDR----PGDKRRWPSIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKV  393 (517)
T ss_pred             ccccccccccccCC----ccccccCCccccCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhc
Confidence            99999986554332    11234456899999999999999 688999999999999998   68999999999999999


Q ss_pred             cCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCC
Q 039837          412 IDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA  491 (544)
Q Consensus       412 ~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  491 (544)
                      +..+|||+|||+|+++++|.+++.||.+|+||++|++++|.+||+++.+++.|.+++|+++++...++.+.+++++.++.
T Consensus       394 ~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~  473 (517)
T PRK08008        394 LEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGE  473 (517)
T ss_pred             ccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCC
Confidence            98899999999999999999999999999999999999999999999999999999999999888888899999998877


Q ss_pred             CCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHH
Q 039837          492 KESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK  535 (544)
Q Consensus       492 ~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~  535 (544)
                      ..+.+++.++++++++++++|..++++++||+|++||++|+.|+
T Consensus       474 ~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~  517 (517)
T PRK08008        474 TLSEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK  517 (517)
T ss_pred             CCCHHHHHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence            77889999999999999999999999999999999999999874

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=1.2e-65  Score=533.07  Aligned_cols=487  Identities=25%  Similarity=0.339  Sum_probs=411.5

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEcc----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHH
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAV----SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA  110 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~  110 (544)
                      ..|+.+.+.+.++.+|+++|++...    .++.+||+||.+++.++|.+|++.|+++||+|+++++|+++++++++||++
T Consensus        21 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~  100 (538)
T TIGR03208        21 DRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACAR  100 (538)
T ss_pred             cCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence            3589999999999999999987521    246899999999999999999999999999999999999999999999999


Q ss_pred             hcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchH-----HHhh---c-CC-C-cEEEecccccccccCHHHHHHhh--
Q 039837          111 AGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIY-----EKVK---G-LG-L-PIIVLGEERIESAINWSELIEAA--  177 (544)
Q Consensus       111 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~---~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~--  177 (544)
                      +|++++|+++.++.+++.++++.++++++++++...     ....   . .. . .++..+..   ....++......  
T Consensus       101 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  177 (538)
T TIGR03208       101 IGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGD---GDDSFDRVLMTPER  177 (538)
T ss_pred             cCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCC---CCcCHHHHhhcccc
Confidence            999999999999999999999999999999976532     1111   1 11 1 22222211   111222222100  


Q ss_pred             ------------hhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHH
Q 039837          178 ------------DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGIC  245 (544)
Q Consensus       178 ------------~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~  245 (544)
                                  ..........+.+||||||.||||+++|+++...+......+  +...+++++..+|++|..|+...+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~--~~~~~d~~l~~~pl~h~~g~~~~~  255 (538)
T TIGR03208       178 DDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL--ELGGGDVILMASPMAHQTGFMYGL  255 (538)
T ss_pred             ccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc--CCCCCCeEEEeCCchhHHHHHHHH
Confidence                        011122334567899999999999999999999888777766  677889999999999999987888


Q ss_pred             HhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhh
Q 039837          246 CATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKK  325 (544)
Q Consensus       246 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~  325 (544)
                      +.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+........+++++.  +++||+++++++.+++.+.
T Consensus       256 ~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~--~~~gG~~~~~~~~~~~~~~  333 (538)
T TIGR03208       256 MMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFT--FLCAGAPIPGILVERAWEL  333 (538)
T ss_pred             HHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceE--EEEcCCCCCHHHHHHHHHH
Confidence            99999999999988889999999999999999999999999988765434455677666  9999999999999999998


Q ss_pred             cCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCCh
Q 039837          326 FPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNE  405 (544)
Q Consensus       326 ~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~  405 (544)
                      + ++.+++.||+||++.+.......   .......++|+|+++++++|+| +++.+++.|+.|||+++|+.++.||++++
T Consensus       334 ~-~~~~~~~YG~tE~~~~~~~~~~~---~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~  408 (538)
T TIGR03208       334 L-GALIVSAWGMTENGAVTVTEPDD---ALEKASTTDGRPLPGVEVKVID-ANGAKLSQGETGRLLVRGCSNFGGYLKRP  408 (538)
T ss_pred             c-CCeEEeeeccCcCCCccccCccc---chhhccCcccccCCCCEEEEEC-CCCCCCcCCCCcEEEEecCcccccccCCc
Confidence            8 78999999999998766543211   0122245789999999999999 57889999999999999999999999998


Q ss_pred             hhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEE
Q 039837          406 EETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACV  485 (544)
Q Consensus       406 ~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v  485 (544)
                      +.+.  .+.++||+|||+|+++++|.+++.||.+|+|+++|++|+|.+||++|.++|+|.+++|++.++...++.+++++
T Consensus       409 ~~~~--~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  486 (538)
T TIGR03208       409 HLNS--TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVV  486 (538)
T ss_pred             cccc--ccCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEE
Confidence            8764  34789999999999999999999999999999999999999999999999999999999999888888999999


Q ss_pred             EeCCCCCCCHHHHHHHHHh-cccCCCceeEEEEeecCCCCCCcccchHHHH
Q 039837          486 VMNPNAKESEDDIMDFVAS-NVATYKKVRVLHFVDGIPKSHSGKIMRRILK  535 (544)
Q Consensus       486 ~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~  535 (544)
                      ++.++...+.+++.+++++ +++.+++|..+++++++|+|++||++|++|+
T Consensus       487 ~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~  537 (538)
T TIGR03208       487 VPKPGCTLDFAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR  537 (538)
T ss_pred             EECCCCCCCHHHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence            9887777788899999985 7999999999999999999999999999986

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=2.5e-67  Score=647.06  Aligned_cols=524  Identities=19%  Similarity=0.249  Sum_probs=442.3

Q ss_pred             CCCCcceeeccccccCCcceeee-cCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHH
Q 039837            2 AMPNSFSVPVPLAAAHDEEHIFR-SRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKAL   80 (544)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L   80 (544)
                      ++|+..+.++++..+.+.+++.. ++.+..+.+...++.+.|.++|+++|+++|+++.  ++++||+||.++++++|..|
T Consensus      1968 ~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~~--~~~lTy~eL~~~a~~lA~~L 2045 (5163)
T PRK12316       1968 EDAQAALGELALLDAGERQRILADWDRTPEAYPRGPGVHQRIAEQAARAPEAIAVVFG--DQHLSYAELDSRANRLAHRL 2045 (5163)
T ss_pred             hCcccccccccCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEcC--CCeEcHHHHHHHHHHHHHHH
Confidence            57899999999999888877644 4555555666679999999999999999999986  78999999999999999999


Q ss_pred             HHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-CCcEEEe
Q 039837           81 RSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-GLPIIVL  159 (544)
Q Consensus        81 ~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~  159 (544)
                      .+.|+++|++|+++++|++++++++|||+++|+++||++|.++.+++.++++++++++++++++....+... ....+.+
T Consensus      2046 ~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~ 2125 (5163)
T PRK12316       2046 RARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPL 2125 (5163)
T ss_pred             HHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccccccceEec
Confidence            999999999999999999999999999999999999999999999999999999999999988766554321 1222322


Q ss_pred             cccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHH
Q 039837          160 GEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIY  239 (544)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  239 (544)
                      +...  ........ ...........+++.|||||||.||||+++|+++.+.+.+....+  ++.++++++.+.|++|..
T Consensus      2126 ~~~~--~~~~~~~~-~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~--~~~~~d~~l~~~~~~fd~ 2200 (5163)
T PRK12316       2126 DRDA--EWADYPDT-APAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY--ELSPADCELQFMSFSFDG 2200 (5163)
T ss_pred             cchh--hhhccCcc-CCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc--CCCCcceEEEecCchHHH
Confidence            2110  00000000 000111223345788999999999999999999999998888777  788999999999999987


Q ss_pred             HHHHHHHhhHhccceEEEcCc--cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHh
Q 039837          240 GITGICCATLRNKGKVVMMNR--FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPD  317 (544)
Q Consensus       240 g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~  317 (544)
                      ++ ..++.++..|+++++.+.  +++..+.+.++++++|++.++|+++..|.+...... ...++|.  +++|||+++++
T Consensus      2201 ~~-~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~lr~--~~~gGe~l~~~ 2276 (5163)
T PRK12316       2201 AH-EQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG-RPPAVRV--YCFGGEAVPAA 2276 (5163)
T ss_pred             HH-HHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhccc-CCcceeE--EEEecccCCHH
Confidence            76 788999999999987663  588999999999999999999999999987543222 2235556  99999999999


Q ss_pred             HHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccc
Q 039837          318 LLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCV  397 (544)
Q Consensus       318 ~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~  397 (544)
                      +.++|.+.+++..++|.||+||++..++...............++|+|+++++++|+| +++++++.|++|||+|+|+++
T Consensus      2277 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~g~~GEl~i~G~~v 2355 (5163)
T PRK12316       2277 SLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILD-ADLNLLAPGMAGELYLGGEGL 2355 (5163)
T ss_pred             HHHHHHHhCCCcEEEECccchhheeeeeeeecccccccCCCcCCcccccCCCEEEEEC-CCCCCCCCCCeeEEEecchhh
Confidence            9999999888899999999999987665433211111122336799999999999999 678999999999999999999


Q ss_pred             cccccCChhhhhcccC-------CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEE
Q 039837          398 MQGYYNNEEETARTID-------KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV  470 (544)
Q Consensus       398 ~~gy~~~~~~~~~~~~-------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  470 (544)
                      ++||+++|+.|.+.|.       +.+||+|||+|++++||.++++||.||+||++|++|++.+||++|.++|+|.+++|+
T Consensus      2356 ~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~ 2435 (5163)
T PRK12316       2356 ARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVV 2435 (5163)
T ss_pred             cccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEE
Confidence            9999999999998883       346999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHH
Q 039837          471 SLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM  538 (544)
Q Consensus       471 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~  538 (544)
                      +.++. .++.++++++..++.....++++++++++||.|++|..++++++||+|++||++|++|++..
T Consensus      2436 ~~~~~-~~~~l~a~v~~~~~~~~~~~~l~~~l~~~Lp~~~vP~~~~~l~~lP~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316       2436 AQDGA-SGKQLVAYVVPDDAAEDLLAELRAWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred             EEecC-CCeEEEEEEEecCCCccCHHHHHHHHHhhCchhcCcceEeeecccCCCCCCccCHhhcCCCc
Confidence            88755 67889999998877777889999999999999999999999999999999999999997643

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.9e-66  Score=545.54  Aligned_cols=494  Identities=17%  Similarity=0.203  Sum_probs=398.4

Q ss_pred             CCCCCCHHHHHHhhhhhcCCceEEEEccC---CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHH
Q 039837           32 VPENVTLPDFVLQDAELYADKVAFVEAVS---GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGI  108 (544)
Q Consensus        32 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~---~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~  108 (544)
                      .....|+.+.+.++  .+|+++|+++..+   .+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||
T Consensus        82 ~~~~~n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~  159 (655)
T PRK03584         82 PGARLNYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLAT  159 (655)
T ss_pred             CCCEeeHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            33445777777653  5799999986422   268999999999999999999999999999999999999999999999


Q ss_pred             HHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchH---------HHh----hcCC-C-cEEEeccc-------cccc
Q 039837          109 MAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIY---------EKV----KGLG-L-PIIVLGEE-------RIES  166 (544)
Q Consensus       109 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~----~~~~-~-~~~~~~~~-------~~~~  166 (544)
                      +++|++++|+++.++.+++.++++.++++++|+++...         ..+    .... + .++.++..       ....
T Consensus       160 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  239 (655)
T PRK03584        160 ASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPG  239 (655)
T ss_pred             HHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCC
Confidence            99999999999999999999999999999999976531         111    1111 1 22222211       1112


Q ss_pred             ccCHHHHHHhhhh-------cCCCCCCCCCCCCCCCcCcceeeccHHHHHH-HHHhhccccCCcccCccEEEEecchhHH
Q 039837          167 AINWSELIEAADK-------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVA-NLCSTLFSVVPEMIGQVTTLGLIPFFHI  238 (544)
Q Consensus       167 ~~~~~~~~~~~~~-------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~  238 (544)
                      ...|.++......       ........+.+||||||.||||++||++++. ........+  ++..+++++...++.|.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~  317 (655)
T PRK03584        240 ALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC--DLGPGDRFFWYTTCGWM  317 (655)
T ss_pred             cccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc--CCCCCCEEEEcCCchHH
Confidence            2345554431111       1123334678999999999999999998754 344444444  67888999999998887


Q ss_pred             HHHHHHHHhhHhccceEEEcCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCC--CCccCccccccccEEEecC
Q 039837          239 YGITGICCATLRNKGKVVMMNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPI--VDEFDLSKLQLRAVMTAAA  312 (544)
Q Consensus       239 ~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~v~~~G~  312 (544)
                      .+.  .++.++..|+++++.+.    .++..+++.++++++|++.++|+++..|.+...  ....+++++|.  +++||+
T Consensus       318 ~~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~--i~~~Ge  393 (655)
T PRK03584        318 MWN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRT--IGSTGS  393 (655)
T ss_pred             hHH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEE--EEEecC
Confidence            543  46688999999998752    478999999999999999999999999876432  23356777777  999999


Q ss_pred             CCCHhHHHHHHhhc-CCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEE
Q 039837          313 PLAPDLLSSFEKKF-PGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELC  391 (544)
Q Consensus       313 ~~~~~~~~~~~~~~-~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~  391 (544)
                      ++++++.+++.+.+ +++.+.+.||+||++.......    .......+++|.|.+|++++|+| ++|.++ .|+.|||+
T Consensus       394 ~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~----~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~-~g~~GeL~  467 (655)
T PRK03584        394 PLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGN----PLLPVYRGEIQCRGLGMAVEAWD-EDGRPV-VGEVGELV  467 (655)
T ss_pred             CCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCC----CCCCcCCCccCCCcCCceeEEEC-CCCCCC-CCCceEEE
Confidence            99999999999988 4688999999999865433221    11234567899999999999999 678888 79999999


Q ss_pred             Eecc--cccccccCChhhhh--c-cc-CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCcc
Q 039837          392 VRSQ--CVMQGYYNNEEETA--R-TI-DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVE  465 (544)
Q Consensus       392 v~~~--~~~~gy~~~~~~~~--~-~~-~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~  465 (544)
                      |+||  +++.|||++++.++  . .+ ..++||+|||+|++|+||++++.||+||+||++|++|+|.+||++|.+||.|.
T Consensus       468 v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~  547 (655)
T PRK03584        468 CTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVL  547 (655)
T ss_pred             EccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcc
Confidence            9996  78999999987543  1 12 12579999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          466 DAAVVSLPDEEAGEIPAACVVMNPNAKESE---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       466 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      +++|++++++..++.+++++++.++...+.   +++.++++++|+.+++|..++++++||+|.+|||+|+.|++.+.
T Consensus       548 ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~  624 (655)
T PRK03584        548 DSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLH  624 (655)
T ss_pred             eEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccchHHHHHHHHc
Confidence            999999999888899999999987655443   57899999999999999999999999999999999999999875

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.9e-66  Score=536.05  Aligned_cols=502  Identities=22%  Similarity=0.321  Sum_probs=413.7

Q ss_pred             CCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHH
Q 039837           28 PAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALG  107 (544)
Q Consensus        28 ~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA  107 (544)
                      |+.+.+...++.++|.+.|+.+|+++|+++.  ++++||+||.+++.++|++|.+.|+++||+|+++++|+.+++++++|
T Consensus         2 ~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la   79 (540)
T PRK06164          2 PHDAAPRADTLASLLDAHARARPDAVALIDE--DRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLA   79 (540)
T ss_pred             ccccccCCCCHHHHHHHHHHhCCCCeEEecC--CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            3455677779999999999999999999965  68999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchH-----HHhhcC------CCc-EEEecccc--cccc--cCHH
Q 039837          108 IMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIY-----EKVKGL------GLP-IIVLGEER--IESA--INWS  171 (544)
Q Consensus       108 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~------~~~-~~~~~~~~--~~~~--~~~~  171 (544)
                      |+++|++++|+++..+.+++.++++.+++++++++.+..     +.+...      .++ ++.++...  ....  ..+.
T Consensus        80 ~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (540)
T PRK06164         80 CARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARV  159 (540)
T ss_pred             HHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCccccc
Confidence            999999999999999999999999999999999976642     111111      111 22222110  0000  0000


Q ss_pred             HHHHhh----------hhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHH
Q 039837          172 ELIEAA----------DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGI  241 (544)
Q Consensus       172 ~~~~~~----------~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~  241 (544)
                      ......          ............+||||||.||+|++||+++.+.+......+  ++..++++++.+|++|.+|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~l~~~p~~~~~g~  237 (540)
T PRK06164        160 QLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY--GYDPGAVLLAALPFCGVFGF  237 (540)
T ss_pred             ccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc--CCCCCCEEEEcCCchhHHHH
Confidence            000000          000112223456799999999999999999999888777777  67789999999999999998


Q ss_pred             HHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEec-CCCCHhHHH
Q 039837          242 TGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAA-APLAPDLLS  320 (544)
Q Consensus       242 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G-~~~~~~~~~  320 (544)
                       ..++.++..|+++++.+.+++..+++.++++++|+++++|+++..|.+.. .....+++++.  +.++| .+...++.+
T Consensus       238 -~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~--~~~~~~~~~~~~~~~  313 (540)
T PRK06164        238 -STLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARL--FGFASFAPALGELAA  313 (540)
T ss_pred             -HHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceee--eeeccCCcchHHHHH
Confidence             57889999999999998899999999999999999999999999998862 23445677665  66665 455566666


Q ss_pred             HHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccC-CCceEEEEeCCCCCcCCCCCCceEEEecccccc
Q 039837          321 SFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFIL-PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQ  399 (544)
Q Consensus       321 ~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~  399 (544)
                      ++.+.  ++++++.||+||++.++.......  .......+.|.++ +++.++|+|++++.+++.|+.|||+++|++++.
T Consensus       314 ~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~  389 (540)
T PRK06164        314 LARAR--GVPLTGLYGSSEVQALVALQPATD--PVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMR  389 (540)
T ss_pred             HHhhc--CCceecceeeccccceeeccCCCC--CCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccc
Confidence            66654  789999999999987665433111  1223334567775 899999999888999999999999999999999


Q ss_pred             cccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCc
Q 039837          400 GYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGE  479 (544)
Q Consensus       400 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~  479 (544)
                      ||+++++.|...|..++||+|||+|+++++|.+++.||.+|++|++|.+++|.+||+.|+++++|.+++|++.+. ..+.
T Consensus       390 gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~-~~~~  468 (540)
T PRK06164        390 GYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR-DGKT  468 (540)
T ss_pred             cccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC-CCce
Confidence            999999999999988999999999999999999999999999999999999999999999999999999999873 3456


Q ss_pred             eeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCc---ccchHHHHHHHHHhh
Q 039837          480 IPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSG---KIMRRILKDKMLEKM  542 (544)
Q Consensus       480 ~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~G---Ki~r~~l~~~~~~~~  542 (544)
                      .+++++++.++...+.+++.++++++++++++|..+++++.+|+|.+|   |++|++|++++++..
T Consensus       469 ~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~  534 (540)
T PRK06164        469 VPVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARL  534 (540)
T ss_pred             eEEEEEEeCCCCCCCHHHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhh
Confidence            788998887776778899999999999999999999999999999999   999999999987654

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=9.9e-66  Score=532.13  Aligned_cols=487  Identities=25%  Similarity=0.355  Sum_probs=414.6

Q ss_pred             CHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeee
Q 039837           37 TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFS  116 (544)
Q Consensus        37 ~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v  116 (544)
                      ++.+.|.++++++|+++|+.+.  ++++||+||.+++.++|++|++.|+++||+|+++++|+.+++++++||+++|++++
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v   78 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH--DRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFV   78 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEE
Confidence            4688999999999999999986  67999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-----C-cEEEecccc-----cccccCHHHHHHhhhh-----c
Q 039837          117 GANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----L-PIIVLGEER-----IESAINWSELIEAADK-----A  180 (544)
Q Consensus       117 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~-~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~  180 (544)
                      |+++.++.+++..+++.+++++++++.+....+....     . .++.++...     ......|+++......     .
T Consensus        79 ~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (515)
T TIGR03098        79 PINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALGDADPPHPV  158 (515)
T ss_pred             eCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhccccccccCCC
Confidence            9999999999999999999999999877655443221     1 122332211     1112234444332111     1


Q ss_pred             CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc
Q 039837          181 GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR  260 (544)
Q Consensus       181 ~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  260 (544)
                      .........+||||||.||+|.+||+++...+......+  ....+++++..+|++|.+++ ..++.++..|+++++.+.
T Consensus       159 ~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~  235 (515)
T TIGR03098       159 IDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL--ENRPDDRLLAVLPLSFDYGF-NQLTTAFYVGATVVLHDY  235 (515)
T ss_pred             CcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh--CCCcccEEEEECchhhHhHH-HHHHHHHHcCCEEEEcCC
Confidence            112223467899999999999999999998888777666  67888999999999999988 567899999999999988


Q ss_pred             cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccc
Q 039837          261 FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEH  340 (544)
Q Consensus       261 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~  340 (544)
                      .++..+++.++++++|++.++|+++..|.+.... ...+++++.  ++++|+++++++.+.+.+.++++.+++.||+||+
T Consensus       236 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~~~l~~--~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~  312 (515)
T TIGR03098       236 LLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP-ESAAPSLRY--LTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEA  312 (515)
T ss_pred             CCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-CCCccceEE--EEecCCcCCHHHHHHHHHHCCCCeEeeeeccccc
Confidence            8999999999999999999999999999875322 234556666  9999999999999999999988999999999998


Q ss_pred             cccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCC------
Q 039837          341 SCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDK------  414 (544)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------  414 (544)
                      +.......    .......+++|+|+++++++|+| ++++.++.|+.|||+++|+.++.|||++++.+...+..      
T Consensus       313 ~~~~~~~~----~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~  387 (515)
T TIGR03098       313 FRSTYLPP----EEVDRRPDSIGKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPG  387 (515)
T ss_pred             cceEeccc----ccccCCCCCcceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccc
Confidence            76443321    11234567899999999999999 67889999999999999999999999999888665532      


Q ss_pred             -----CCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCC
Q 039837          415 -----NGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP  489 (544)
Q Consensus       415 -----~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  489 (544)
                           ++||+|||+|+++++|++++.||.+|+|+++|.+++|.+||+++.++|.|.+++|++++++..++.++++++..+
T Consensus       388 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~  467 (515)
T TIGR03098       388 ELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPG  467 (515)
T ss_pred             cccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCC
Confidence                 348999999999999999999999999999999999999999999999999999999998888999999988766


Q ss_pred             CCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHH
Q 039837          490 NAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD  536 (544)
Q Consensus       490 ~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~  536 (544)
                      +...+.+++.++++++|+++++|..++++++||+|.+||++|++|++
T Consensus       468 ~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       468 GEELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA  514 (515)
T ss_pred             CCCCCHHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence            66678899999999999999999999999999999999999999875

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.3e-66  Score=534.43  Aligned_cols=479  Identities=23%  Similarity=0.336  Sum_probs=398.6

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGL-RKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      .|+.++|.+++  .|+++|+++.  +..+||+||.++++++|..|.+.|+ ++||+|+++++|+++++++++||+++|++
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~--~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~   78 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG--DRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYV   78 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCE
Confidence            47888888765  6999999986  6899999999999999999999999 89999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC---CCcEEEecccccccccCHHHHHHhh------hhcCCCCC
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL---GLPIIVLGEERIESAINWSELIEAA------DKAGNNFS  185 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  185 (544)
                      ++|++|.++.+++.++++++++++++++++....+.+.   ...++.++..      .+.+.....      ........
T Consensus        79 ~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  152 (540)
T PRK13388         79 LVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVDTP------AYAELVAAAGALTPHREVDAMDP  152 (540)
T ss_pred             EEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcccCceEEEccch------hhhhhhccccCcCCCCCCCCCCe
Confidence            99999999999999999999999999988766555443   2233333211      111111100      01112333


Q ss_pred             CCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHH
Q 039837          186 NDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRA  265 (544)
Q Consensus       186 ~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~  265 (544)
                      ....+||||||.||||.++|+++..........+  +...+++++..+|++|.+++...++.++..|+++++.+.+++..
T Consensus       153 a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~  230 (540)
T PRK13388        153 FMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF--GLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASG  230 (540)
T ss_pred             EEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh--CCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHH
Confidence            4568999999999999999999988887776666  77889999999999999988766777899999999988889999


Q ss_pred             HHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcccccccc
Q 039837          266 FLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITL  345 (544)
Q Consensus       266 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~  345 (544)
                      +++.++++++|++..+|..+..++............++   +. .|+.+++....+|.+.+ ++++++.||+||++.++.
T Consensus       231 ~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~---~~-~G~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~  305 (540)
T PRK13388        231 FLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLR---VA-FGNEASPRDIAEFSRRF-GCQVEDGYGSSEGAVIVV  305 (540)
T ss_pred             HHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceE---EE-ECCCCCHHHHHHHHHHh-CCceecccccccccceee
Confidence            99999999999999999999998876543222222322   23 36677888889999888 789999999999987664


Q ss_pred             ccCCCCCCCCCCCCCcccccCCCceEE-----------EEeCCCCCcC-CCCCCceEEEe-cccccccccCChhhhhccc
Q 039837          346 TYGDPANPSAGSKKNSVGFILPNLEVK-----------FINPETGKSL-PSNTPGELCVR-SQCVMQGYYNNEEETARTI  412 (544)
Q Consensus       346 ~~~~~~~~~~~~~~~~~G~~~~~~~~~-----------i~d~~~~~~~-~~g~~Gel~v~-~~~~~~gy~~~~~~~~~~~  412 (544)
                      ..       .....+++|+|++++++.           ++| ++|+.+ +.+..|||+++ |+.++.||+++++.+.+.|
T Consensus       306 ~~-------~~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~  377 (540)
T PRK13388        306 RE-------PGTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM  377 (540)
T ss_pred             cC-------CCCCCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCcccccccCChHHHHHHh
Confidence            32       123457899999997653           334 345544 34678999998 9999999999999998888


Q ss_pred             CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCC
Q 039837          413 DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK  492 (544)
Q Consensus       413 ~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  492 (544)
                       .+|||+|||+|+++++|++++.||.+|+||++|++|+|.+||++|.++|+|.+++|+++++...|+.+++++++.++..
T Consensus       378 -~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~  456 (540)
T PRK13388        378 -RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGAT  456 (540)
T ss_pred             -hcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCc
Confidence             5799999999999999999999999999999999999999999999999999999999998888888888888887777


Q ss_pred             CCHHHHHHHHHhc--ccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          493 ESEDDIMDFVASN--VATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       493 ~~~~~l~~~l~~~--l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      .+.+++.++++.+  |+.+++|..++++++||+|.+||++|++|+++..+
T Consensus       457 ~~~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~  506 (540)
T PRK13388        457 FDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWA  506 (540)
T ss_pred             CCHHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccC
Confidence            7888999999764  99999999999999999999999999999987643

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=3.1e-67  Score=636.67  Aligned_cols=523  Identities=20%  Similarity=0.245  Sum_probs=440.3

Q ss_pred             CCCCcceeeccccccCCcceeee-cCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHH
Q 039837            2 AMPNSFSVPVPLAAAHDEEHIFR-SRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKAL   80 (544)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L   80 (544)
                      ++|+..+.++++..+.+...+.. ++.+..+.+...++.++|.++|+++|+++|+++.  ++.+||+||.++++++|++|
T Consensus      1539 ~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L 1616 (3956)
T PRK12467       1539 ADPERRLGELDLLDEAERRQILEGWNATHTGYPLARLVHQLIEDQAAATPEAVALVFG--EQELTYGELNRRANRLAHRL 1616 (3956)
T ss_pred             hCccCceeeccccchHHhhhhHHhhcCCccCCCccccHHHHHHHHHHhCCCCeEEEeC--CcEEeHHHHHHHHHHHHHHH
Confidence            57899999999999988887754 5555555666679999999999999999999986  78999999999999999999


Q ss_pred             HHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-CCcEEEe
Q 039837           81 RSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-GLPIIVL  159 (544)
Q Consensus        81 ~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~  159 (544)
                      .+.|+++|++|++++++++++++++|||+++|++++|++|.++.+++.++++++++++++++......+... ....+.+
T Consensus      1617 ~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 1696 (3956)
T PRK12467       1617 IALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVL 1696 (3956)
T ss_pred             HHcCCCCCCEEEEEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccccCCcEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999987765554332 2333433


Q ss_pred             ccccc--ccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhH
Q 039837          160 GEERI--ESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFH  237 (544)
Q Consensus       160 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  237 (544)
                      +....  .....    ............+++.+||||||.||||+++|+++.+.+.+....+  ++...++++.+.|++|
T Consensus      1697 ~~~~~~~~~~~~----~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~~~~f 1770 (3956)
T PRK12467       1697 DQEDDWLEGYSD----SNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY--QLSAADVVLQFTSFAF 1770 (3956)
T ss_pred             ccccchhccCCC----CCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc--CCCcccEEEEecCccH
Confidence            32110  00000    0000011223345788999999999999999999999998887777  7888999999999999


Q ss_pred             HHHHHHHHHhhHhccceEEEcCc---cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCC
Q 039837          238 IYGITGICCATLRNKGKVVMMNR---FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPL  314 (544)
Q Consensus       238 ~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~  314 (544)
                      ..++ +.++.++..|+++++.+.   .++..+++.|+++++|++.++|+++..|.+... ....+++++.  +++|||++
T Consensus      1771 d~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~--v~~gGe~l 1846 (3956)
T PRK12467       1771 DVSV-WELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRR--VVCGGEAL 1846 (3956)
T ss_pred             HHHH-HHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceE--EEEccccC
Confidence            9887 678899999999999863   478999999999999999999999999987432 2234567666  99999999


Q ss_pred             CHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEec
Q 039837          315 APDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRS  394 (544)
Q Consensus       315 ~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~  394 (544)
                      ++++.++|.+.+++..++|.||+||++..++...............++|+|+++++++|+| +.+++++.|+.|||+|+|
T Consensus      1847 ~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~GEl~i~G 1925 (3956)
T PRK12467       1847 EVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGG 1925 (3956)
T ss_pred             CHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecc
Confidence            9999999999888889999999999987665433211111223356899999999999999 689999999999999999


Q ss_pred             ccccccccCChhhhhcccC-------CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccce
Q 039837          395 QCVMQGYYNNEEETARTID-------KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDA  467 (544)
Q Consensus       395 ~~~~~gy~~~~~~~~~~~~-------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  467 (544)
                      +++++||+++|+.|.+.|.       +.+||+|||+|++++||.++++||.||+||++|++|++.+||++|.++|+|.++
T Consensus      1926 ~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a 2005 (3956)
T PRK12467       1926 VGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREA 2005 (3956)
T ss_pred             ccccccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceE
Confidence            9999999999999998873       345999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCCceeEEEEEeCCCCCC--------CHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHH
Q 039837          468 AVVSLPDEEAGEIPAACVVMNPNAKE--------SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM  538 (544)
Q Consensus       468 ~v~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~  538 (544)
                      +|++.+ ...+..++++++...+...        ..++++++++++||.|++|..++++++||+|++||++|++|.+..
T Consensus      2006 ~vv~~~-~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidr~~L~~~~ 2083 (3956)
T PRK12467       2006 VVIAQD-GANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKALPAPD 2083 (3956)
T ss_pred             EEEEec-CCCCcEEEEEEEecCcccccccccccccHHHHHHHHHhhCchhhCchhhhhhhcCCCCCCCCcchhhCCCCc
Confidence            999886 4456789999987654321        346799999999999999999999999999999999999997654

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.4e-66  Score=592.87  Aligned_cols=519  Identities=19%  Similarity=0.235  Sum_probs=430.5

Q ss_pred             CCCCcceeeccccccCCcceeeecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHH
Q 039837            2 AMPNSFSVPVPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALR   81 (544)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~   81 (544)
                      ++|+..+.++++..+.+...+...+....+.+. .++.++|.++++.+|+++|+++.  ++.+||+||.++++++|+.|.
T Consensus       425 ~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~~~Al~~~--~~~~Ty~eL~~~~~~la~~L~  501 (1296)
T PRK10252        425 ADPALLCGDVDILLPGEYAQLAQVNATAVEIPE-TTLSALVAQQAAKTPDAPALADA--RYQFSYREMREQVVALANLLR  501 (1296)
T ss_pred             hCCCCChhhcCCCCHHHHHHHHHhcCCCCCCCc-CCHHHHHHHHHHhCCCCeEEEcC--CCcEeHHHHHHHHHHHHHHHH
Confidence            467888888888877766655444444444443 68999999999999999999987  689999999999999999999


Q ss_pred             HcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-CcEEEec
Q 039837           82 SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-LPIIVLG  160 (544)
Q Consensus        82 ~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~  160 (544)
                      +.|+++||+|+++++|+++++++++||+++|++++|++++++.+++..+++.+++++++++.+....+.... ......+
T Consensus       502 ~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  581 (1296)
T PRK10252        502 ERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPDLTSLCYN  581 (1296)
T ss_pred             HcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCCCceeeecc
Confidence            999999999999999999999999999999999999999999999999999999999999887665554321 1111111


Q ss_pred             ccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHH
Q 039837          161 EERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYG  240 (544)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  240 (544)
                      ......  ...    ..........+++.+||||||.||||+++|+++.+.+.+....+  ++.++++++...|++|..+
T Consensus       582 ~~~~~~--~~~----~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~--~~~~~d~~l~~~~~~fd~~  653 (1296)
T PRK10252        582 APLAPQ--GAA----PLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY--PLTADDVVLQKTPCSFDVS  653 (1296)
T ss_pred             cccccc--cCC----CCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc--CCCCCCEEEEeCCcchhhh
Confidence            100000  000    00011223345788999999999999999999999998888877  7889999999999999988


Q ss_pred             HHHHHHhhHhccceEEEcC---ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCc--cCccccccccEEEecCCCC
Q 039837          241 ITGICCATLRNKGKVVMMN---RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDE--FDLSKLQLRAVMTAAAPLA  315 (544)
Q Consensus       241 ~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~l~~~~v~~~G~~~~  315 (544)
                      + ..++.++..|+++++.+   ..++..+.+.++++++|++.++|+++..+++......  ..+++++.  +++|||+++
T Consensus       654 ~-~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~--i~~gGe~l~  730 (1296)
T PRK10252        654 V-WEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQ--VFCSGEALP  730 (1296)
T ss_pred             H-HHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccE--EEEecCCCC
Confidence            7 67888999999999976   3578999999999999999999999999887543222  23456666  999999999


Q ss_pred             HhHHHHHHhhcCCCeEEecccCccccccccccCCCCCC--CCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEe
Q 039837          316 PDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANP--SAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVR  393 (544)
Q Consensus       316 ~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~  393 (544)
                      +++.++|.+.+ +++++|.||+||++..++........  .......++|+|++++.++|+| +.+++++.|+.|||+|+
T Consensus       731 ~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~  808 (1296)
T PRK10252        731 ADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLT  808 (1296)
T ss_pred             HHHHHHHHhcC-CCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEec
Confidence            99999999877 89999999999998766544321111  0123456899999999999999 78999999999999999


Q ss_pred             cccccccccCChhhhhcccCC------CCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccce
Q 039837          394 SQCVMQGYYNNEEETARTIDK------NGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDA  467 (544)
Q Consensus       394 ~~~~~~gy~~~~~~~~~~~~~------~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  467 (544)
                      |+.+++||+++|+.|...|..      .+||+|||+|++++||.++++||.||+||++|++|++.+||++|.++|+|.++
T Consensus       809 g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a  888 (1296)
T PRK10252        809 GIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQA  888 (1296)
T ss_pred             ccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccce
Confidence            999999999999999888743      34999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeec----CCCCC--ceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHH
Q 039837          468 AVVSLP----DEEAG--EIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD  536 (544)
Q Consensus       468 ~v~~~~----~~~~~--~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~  536 (544)
                      +|+...    +...+  ..++++++...+...+.++++++++++|+.|++|..++.+++||+|++||++|++|++
T Consensus       889 ~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~  963 (1296)
T PRK10252        889 VTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPL  963 (1296)
T ss_pred             EEEEEeccccccCCCCccEEEEEEEcCCCCCCCHHHHHHHHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCC
Confidence            877552    11122  3689998877665667889999999999999999999999999999999999999865

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=1.6e-65  Score=540.00  Aligned_cols=492  Identities=17%  Similarity=0.201  Sum_probs=392.9

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEccC---CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHH
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEAVS---GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIM  109 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~---~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~  109 (544)
                      ....|+...+.++   .++++|+++..+   .+++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||+
T Consensus        84 ~~~~n~~~~~~~~---~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~  160 (652)
T TIGR01217        84 GARLNYAENLLRA---AGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATA  160 (652)
T ss_pred             CCeeeHHHHHhcc---CCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4556787777664   578999876422   2589999999999999999999999999999999999999999999999


Q ss_pred             HhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchH---------HHhh----cCC-Cc-EEEecccc--------ccc
Q 039837          110 AAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIY---------EKVK----GLG-LP-IIVLGEER--------IES  166 (544)
Q Consensus       110 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~----~~~-~~-~~~~~~~~--------~~~  166 (544)
                      ++|++++|+++.++.+++.+++++++++++|+++...         +.+.    ... ++ ++.+....        ...
T Consensus       161 ~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  240 (652)
T TIGR01217       161 SVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDG  240 (652)
T ss_pred             HhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccC
Confidence            9999999999999999999999999999999976531         2221    111 12 22222100        012


Q ss_pred             ccCHHHHHHhhhh-------cCCCCCCCCCCCCCCCcCcceeeccHHHHHH-HHHhhccccCCcccCccEEEEecchhHH
Q 039837          167 AINWSELIEAADK-------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVA-NLCSTLFSVVPEMIGQVTTLGLIPFFHI  238 (544)
Q Consensus       167 ~~~~~~~~~~~~~-------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~  238 (544)
                      ...++++......       ........+.+||||||.||||++||++++. ........+  ++.++|+++...|+.|.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~  318 (652)
T TIGR01217       241 ALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC--DLGPGDRLFYYTTTGWM  318 (652)
T ss_pred             cccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc--CCCCCcEEEEeCCcchh
Confidence            2345554432111       1113344678999999999999999998654 333333344  67888999999999987


Q ss_pred             HHHHHHHHhhHhccceEEEcCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCC--CCccCccccccccEEEecC
Q 039837          239 YGITGICCATLRNKGKVVMMNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPI--VDEFDLSKLQLRAVMTAAA  312 (544)
Q Consensus       239 ~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~v~~~G~  312 (544)
                      ++  ..++.++..|+++++.+.    .++..+++.++++++|++.+.|+++..+.+...  ....+++++|.  +++||+
T Consensus       319 ~~--~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~--i~~gGe  394 (652)
T TIGR01217       319 MW--NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQC--VASTGS  394 (652)
T ss_pred             hh--HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeE--EEeecC
Confidence            54  235579999999999752    268899999999999999888888877765321  23456788777  999999


Q ss_pred             CCCHhHHHHHHhhcC-CCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEE
Q 039837          313 PLAPDLLSSFEKKFP-GVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELC  391 (544)
Q Consensus       313 ~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~  391 (544)
                      ++++++.+++.+.++ +..+.+.||+||++.......    .......+++|.|.+|++++|+| ++|+++ .|+.|||+
T Consensus       395 ~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~----~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~-~g~~GEl~  468 (652)
T TIGR01217       395 PLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGAN----PTLPVHIGEIQAPGLGTAVQSWD-PEGKPV-TGEVGELV  468 (652)
T ss_pred             CCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCC----CCCCCcCCccCCCcCCCceEEEC-CCCCCC-CCCccEEE
Confidence            999999999998873 456789999999754333221    11223457889999999999999 678887 59999999


Q ss_pred             Eecc--cccccccCChhhhh---cccC-CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCcc
Q 039837          392 VRSQ--CVMQGYYNNEEETA---RTID-KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVE  465 (544)
Q Consensus       392 v~~~--~~~~gy~~~~~~~~---~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~  465 (544)
                      ++||  +++.|||++++.++   ..|. .+|||+|||+|++|+||+++++||+||+||++|++|+|.+||++|.+||+|.
T Consensus       469 v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~  548 (652)
T TIGR01217       469 CTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVR  548 (652)
T ss_pred             EecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcc
Confidence            9996  68999999998654   2232 3689999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          466 DAAVVSLPDEEAGEIPAACVVMNPNAKESE---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       466 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      +++|++++++..|+.++++|++.++...+.   ++++++++++|+.+++|..++++++||+|.+|||+|+.|++.+.
T Consensus       549 eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~  625 (652)
T TIGR01217       549 ESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQ  625 (652)
T ss_pred             eEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHc
Confidence            999999999988999999999987765554   58999999999999999999999999999999999999999874

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=6.4e-67  Score=643.38  Aligned_cols=518  Identities=19%  Similarity=0.252  Sum_probs=440.2

Q ss_pred             CCCCcceeeccccccCCcceee-ecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHH
Q 039837            2 AMPNSFSVPVPLAAAHDEEHIF-RSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKAL   80 (544)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L   80 (544)
                      ++|+..+..+++..+.+..++. .++.+....+...++.++|.+.|+++|+++|+++.  ++++||+||.++++++|+.|
T Consensus       476 ~~p~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~~--~~~~TY~eL~~~~~~lA~~L  553 (5163)
T PRK12316        476 ENPQARVDELPMLDAEERGQLVEGWNATAAEYPLQRGVHRLFEEQVERTPEAPALAFG--EETLDYAELNRRANRLAHAL  553 (5163)
T ss_pred             hccccccccCCCCCHHHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHCCCCeEEEeC--CceEcHHHHHHHHHHHHHHH
Confidence            5788999999999888876653 34444445555679999999999999999999986  68999999999999999999


Q ss_pred             HHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-CCcEEEe
Q 039837           81 RSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-GLPIIVL  159 (544)
Q Consensus        81 ~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~  159 (544)
                      .+.|+++|++|+++++|++++++++|||+++|++++|++|.++.+++.++++.+++++++++......+... ....+.+
T Consensus       554 ~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  633 (5163)
T PRK12316        554 IERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDL  633 (5163)
T ss_pred             HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcccCceEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999987765544322 2333333


Q ss_pred             cccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHH
Q 039837          160 GEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIY  239 (544)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  239 (544)
                      +..... ...... ............+++.+||||||.||||+++|+++.+.+.+....+  ++..+++++..+|++|..
T Consensus       634 ~~~~~~-~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~fd~  709 (5163)
T PRK12316        634 DRPAAW-LEGYSE-ENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY--GLGVGDTVLQKTPFSFDV  709 (5163)
T ss_pred             cCcchh-hccCCC-CCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc--CCCCCCEEEeeCCeehHH
Confidence            211100 000000 0000011222334678999999999999999999999999888877  788999999999999999


Q ss_pred             HHHHHHHhhHhccceEEEcC---ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCH
Q 039837          240 GITGICCATLRNKGKVVMMN---RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAP  316 (544)
Q Consensus       240 g~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~  316 (544)
                      ++ ..++.++..|+++++.+   ..++..+.+.++++++|++.++|+++..|++...  ...+++++.  +++|||++++
T Consensus       710 ~~-~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~--~~~gGe~l~~  784 (5163)
T PRK12316        710 SV-WEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--VASCTSLRR--IVCSGEALPA  784 (5163)
T ss_pred             HH-HHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCccE--EEEeeccCCH
Confidence            97 67899999999999985   3689999999999999999999999999987543  234667777  9999999999


Q ss_pred             hHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEeccc
Q 039837          317 DLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQC  396 (544)
Q Consensus       317 ~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~  396 (544)
                      ++.++|.+.+++++++|.||+||++..++....   ........++|+|++|++++|+| +++++++.|+.|||+|+|++
T Consensus       785 ~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~---~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~  860 (5163)
T PRK12316        785 DAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTC---VEEGGDSVPIGRPIANLACYILD-ANLEPVPVGVLGELYLAGRG  860 (5163)
T ss_pred             HHHHHHHHhCCCCeEEeCcCcChheeeeeEEec---ccccCCCCCCccccCCCEEEEEC-CCCCCCCCCCceEEEecccc
Confidence            999999988888999999999999865443322   11234456899999999999999 57899999999999999999


Q ss_pred             ccccccCChhhhhcccC------CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEE
Q 039837          397 VMQGYYNNEEETARTID------KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV  470 (544)
Q Consensus       397 ~~~gy~~~~~~~~~~~~------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  470 (544)
                      ++.||+++|+.|...|.      +++||+|||+|++++||.+++.||.||+||++|++|+|.+||++|.+||+|.+++|+
T Consensus       861 v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~  940 (5163)
T PRK12316        861 LARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVL  940 (5163)
T ss_pred             cChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEE
Confidence            99999999999998873      346999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHH
Q 039837          471 SLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM  538 (544)
Q Consensus       471 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~  538 (544)
                      +.+    ++.+++++++.++.....++++++++++|+.|++|..++++++||+|++||++|++|.+..
T Consensus       941 ~~~----~~~lva~vv~~~~~~~~~~~l~~~l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~ 1004 (5163)
T PRK12316        941 AVD----GKQLVGYVVLESEGGDWREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKALPAPE 1004 (5163)
T ss_pred             EcC----CCeEEEEEEccCCCCCCHHHHHHHHHhhCCCccCCCeEEEHhhCCCCCCCChhHHhhcCcc
Confidence            886    5789999998776667788999999999999999999999999999999999999998653

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=2.2e-65  Score=530.09  Aligned_cols=490  Identities=23%  Similarity=0.338  Sum_probs=412.4

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      ..++.+.|+++|+  |+++|+++.  ++.+||+||.+++.++|.+|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v   99 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVICG--ERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVA   99 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeE
Confidence            4689999999887  999999986  689999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccch--------HHHhhcC--CCcEEEecccccccccCHHHHHHhhh------
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPI--------YEKVKGL--GLPIIVLGEERIESAINWSELIEAAD------  178 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------  178 (544)
                      ++++.+.....++..+++.+++++++++...        ...+...  ....+.+...  .....+........      
T Consensus       100 ~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  177 (536)
T PRK10946        100 PVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLND--DGEHSLDDAINHPAEDFTAT  177 (536)
T ss_pred             EecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecC--CCCccHHHHhhCcccccccC
Confidence            8888777778889999999999999987542        1222221  1222322211  11222333332211      


Q ss_pred             hcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHH-HHHhhHhccceEEE
Q 039837          179 KAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITG-ICCATLRNKGKVVM  257 (544)
Q Consensus       179 ~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~  257 (544)
                      ...........+||||||.||||++||+++...+......+  ++..++++++.+|++|.+++.. .++.++..|+++++
T Consensus       178 ~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~--~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~  255 (536)
T PRK10946        178 PSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC--GFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVL  255 (536)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc--CCCCCceEEEecCccccccchhhhHHHHhhcCcEEEE
Confidence            11122233567899999999999999999999988777666  7788899999999999888754 56788999999999


Q ss_pred             cCccCHHHHHHHHHHcCceeeecchHHHHHHhcCC--CCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecc
Q 039837          258 MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDP--IVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAY  335 (544)
Q Consensus       258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  335 (544)
                      .+..++..+++.++++++|++.++|.++..|++..  ......+++++.  +++||+++++++.++|.+.+ ++++++.|
T Consensus       256 ~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~--v~~gg~~l~~~~~~~~~~~~-g~~~~~~Y  332 (536)
T PRK10946        256 APDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKL--LQVGGARLSETLARRIPAEL-GCQLQQVF  332 (536)
T ss_pred             CCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeE--EEECCCCCCHHHHHHHHHhc-CCeEEEee
Confidence            88889999999999999999999999999998752  222334566666  99999999999999999988 89999999


Q ss_pred             cCccccccccccCCCCCCCCCCCCCcccccC-CCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCC
Q 039837          336 GLTEHSCITLTYGDPANPSAGSKKNSVGFIL-PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDK  414 (544)
Q Consensus       336 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~  414 (544)
                      |+||++.......    ........++|+|+ +++.++++| +++++++.|+.|||+++|+.++.||+++++.+...|+.
T Consensus       333 G~tE~~~~~~~~~----~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~  407 (536)
T PRK10946        333 GMAEGLVNYTRLD----DSDERIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDA  407 (536)
T ss_pred             cccccceeeecCC----CccccccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchhhcCCcccchhhccc
Confidence            9999653332111    11233457899998 899999999 68899999999999999999999999999999999988


Q ss_pred             CCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCC
Q 039837          415 NGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES  494 (544)
Q Consensus       415 ~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  494 (544)
                      ++||+|||+|+++++|++++.||.+|+++++|.+++|.+||+.|.++|+|.+++|++.++...|+.+++++++.++  .+
T Consensus       408 d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~--~~  485 (536)
T PRK10946        408 NGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP--LK  485 (536)
T ss_pred             CCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC--CC
Confidence            9999999999999999999999999999999999999999999999999999999999988888889999987654  77


Q ss_pred             HHHHHHHHHhc-ccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837          495 EDDIMDFVASN-VATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM  542 (544)
Q Consensus       495 ~~~l~~~l~~~-l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~  542 (544)
                      .+++.+++++. +++|++|..+++++++|+|++||++|++|++++.++.
T Consensus       486 ~~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~~  534 (536)
T PRK10946        486 AVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA  534 (536)
T ss_pred             HHHHHHHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhhc
Confidence            88999999886 9999999999999999999999999999999987764

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.6e-65  Score=531.50  Aligned_cols=492  Identities=28%  Similarity=0.481  Sum_probs=407.2

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSL-GLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      ..++.+.|.++++.+|+++|+.+.  ++.+||.||.++++++|++|.+. |+++||+|+++++|+++++++++||+++|+
T Consensus        23 ~~~~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~  100 (562)
T PRK12492         23 YKSVVEVFERSCKKFADRPAFSNL--GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGL  100 (562)
T ss_pred             cCcHHHHHHHHHHhCCCCeeEecC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCe
Confidence            468999999999999999999875  67999999999999999999985 999999999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC----CCcEEEec---c-----------------------cc
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----GLPIIVLG---E-----------------------ER  163 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~---~-----------------------~~  163 (544)
                      +++++++.++.+++.+++++++++++++++...+.+...    ........   +                       ..
T Consensus       101 v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (562)
T PRK12492        101 IVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYH  180 (562)
T ss_pred             EEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccccC
Confidence            999999999999999999999999999876543322211    00100000   0                       00


Q ss_pred             cccccCHHHHHHhhhh-------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCC-c------ccC-ccE
Q 039837          164 IESAINWSELIEAADK-------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVP-E------MIG-QVT  228 (544)
Q Consensus       164 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~-~------~~~-~~~  228 (544)
                      ......++........       ........+.+||||||.||||++||+++...+......+.. .      ... .++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (562)
T PRK12492        181 LPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEV  260 (562)
T ss_pred             CcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeE
Confidence            0011223333222110       111223456789999999999999999998776554433210 1      122 356


Q ss_pred             EEEecchhHHHHHHHHHHhhHhccceEEEcC-ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccE
Q 039837          229 TLGLIPFFHIYGITGICCATLRNKGKVVMMN-RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAV  307 (544)
Q Consensus       229 ~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v  307 (544)
                      ++..+|++|.+++...++..+..|...++.. +.++..+++.++++++|++.++|+++..|++.......+++++++  +
T Consensus       261 ~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~--~  338 (562)
T PRK12492        261 MIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKL--T  338 (562)
T ss_pred             EEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeE--E
Confidence            7889999999998777778888888776654 568899999999999999999999999998876655566777777  9


Q ss_pred             EEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCC
Q 039837          308 MTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTP  387 (544)
Q Consensus       308 ~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~  387 (544)
                      ++||+++++++.++|.+.+ ++++++.||+||++.++.....    ......+++|+|+++++++|+| +++.+++.|+.
T Consensus       339 ~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~----~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~~  412 (562)
T PRK12492        339 NSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPY----GELARLGTVGIPVPGTALKVID-DDGNELPLGER  412 (562)
T ss_pred             EeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCC----cccccCCccceecCCCEEEEEC-CCCCCCCCCCc
Confidence            9999999999999999887 8999999999999876654331    1223456899999999999999 57899999999


Q ss_pred             ceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccce
Q 039837          388 GELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDA  467 (544)
Q Consensus       388 Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  467 (544)
                      |||+++|+.++.|||++++.+...|+.++||+|||+|+++++|.+++.||.+|+++++|.+++|.+||+.|.++|.|.++
T Consensus       413 Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~  492 (562)
T PRK12492        413 GELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANC  492 (562)
T ss_pred             eEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEE
Confidence            99999999999999999999998887789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 039837          468 AVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK  537 (544)
Q Consensus       468 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~  537 (544)
                      +|++.++...++.++++++..+. ..+.+++.++++++|+.+++|..++++++||+|.+||++|++|+++
T Consensus       493 ~v~~~~~~~~~~~~~~~v~~~~~-~~~~~~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~  561 (562)
T PRK12492        493 AAIGVPDERSGEAVKLFVVARDP-GLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDI  561 (562)
T ss_pred             EEEeccCCCCCceEEEEEEeCCC-CCCHHHHHHHHHHhcccccCCcEEEEeccCCCCCCCceeHHHHHhh
Confidence            99999888788888888876543 4577899999999999999999999999999999999999999875

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=9.3e-66  Score=530.43  Aligned_cols=484  Identities=20%  Similarity=0.285  Sum_probs=405.3

Q ss_pred             CHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeee
Q 039837           37 TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFS  116 (544)
Q Consensus        37 ~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v  116 (544)
                      ++.+.|.+.|+.+|+++|+.+.  ++.+||+||.+++.++|+.|.+.|+++||+|+++++|+.+++++++||+++|++++
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v   78 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ--GQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYI   78 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC--CcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence            5778999999999999999876  78999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhh------hhcCCCCCCCCCC
Q 039837          117 GANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAA------DKAGNNFSNDDDV  190 (544)
Q Consensus       117 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  190 (544)
                      |+++.++.+++.++++..+++.++++.+.......  ...+.++.        ........      ..........+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~il~  148 (502)
T TIGR01734        79 PVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--TQIITLSA--------LEQAETSGGPVSFDHAVKGDDNYYIIY  148 (502)
T ss_pred             CCCCcChHHHHHHHHHhcCCCEEEecccccccccC--CceEEchH--------hhhhhhhcCCccccccCCCCCeEEEEE
Confidence            99999999999999999999999998765433322  12222210        00000000      0111222335788


Q ss_pred             CCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc---cCHHHHH
Q 039837          191 KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR---FELRAFL  267 (544)
Q Consensus       191 tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~  267 (544)
                      ||||||.||+|.+||+++...+.+....+  ....++.++...|++|..++ ..++.++..|+++++.++   .++..++
T Consensus       149 TSGTTG~PK~v~~s~~~~~~~~~~~~~~~--~~~~~~~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~  225 (502)
T TIGR01734       149 TSGSTGNPKGVQISHDNLVSFTNWMLADF--PLSEGKQFLNQAPFSFDLSV-MDLYPCLASGGTLHCLDKDITNNFKLLF  225 (502)
T ss_pred             CCCCCCCCCEEEEecHHHHHHHHHHHHhC--CCCCCceEEeecCceechhH-HHHHHHHHCCCEEEEcCHHHhcCHHHHH
Confidence            99999999999999999999888777666  77888999999999999887 677889999999998874   4788999


Q ss_pred             HHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcccccccccc
Q 039837          268 DALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTY  347 (544)
Q Consensus       268 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~  347 (544)
                      +.+.+++++.+.++|+++..++.........+++++.  ++++|++++.++.+++.+.++++.+++.||+||++..+...
T Consensus       226 ~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~--~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~  303 (502)
T TIGR01734       226 EELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTH--FLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSV  303 (502)
T ss_pred             HHHHHcCCeEEEEChhHHHHHHhccccccccCCcccE--EEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEE
Confidence            9999999999999999998877654444455667666  99999999999999999999899999999999998655433


Q ss_pred             CCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhccc---CCCCeeecCceE
Q 039837          348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI---DKNGWLHTGDIG  424 (544)
Q Consensus       348 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~~~~~TGD~~  424 (544)
                      ....+........++|.+.++++++|+| +++.+++.|+.|||+++|+.++.||+++++.+...|   ++.+||+|||+|
T Consensus       304 ~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg  382 (502)
T TIGR01734       304 KITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAG  382 (502)
T ss_pred             EccccccccCCccccccccCCCEEEEEC-CCCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEE
Confidence            2211121234456799999999999999 578999999999999999999999999999887665   344699999999


Q ss_pred             EEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeec-CCCCCceeEEEEEeCCCCCCCH----HHHH
Q 039837          425 YIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLP-DEEAGEIPAACVVMNPNAKESE----DDIM  499 (544)
Q Consensus       425 ~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~-~~~~~~~~~~~v~~~~~~~~~~----~~l~  499 (544)
                      +++++ ++++.||.+|+|+++|++|+|.+||+++.++|.|.++++++.. ....++.++++++..+......    .++.
T Consensus       383 ~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~  461 (502)
T TIGR01734       383 TITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIK  461 (502)
T ss_pred             EEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHHHHH
Confidence            99876 9999999999999999999999999999999999999999875 4445678888888765433222    6788


Q ss_pred             HHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          500 DFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       500 ~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      +.+++.++++++|..+++++++|+|++||++|++|++++.
T Consensus       462 ~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       462 KELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN  501 (502)
T ss_pred             HHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence            8999999999999999999999999999999999999864

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.6e-65  Score=546.96  Aligned_cols=483  Identities=21%  Similarity=0.272  Sum_probs=394.9

Q ss_pred             CCCCHHHHHHhhhhhcCC-ceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc
Q 039837           34 ENVTLPDFVLQDAELYAD-KVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG  112 (544)
Q Consensus        34 ~~~~l~~~l~~~a~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G  112 (544)
                      ...|+.+.|.++++++|+ ++|+.+. +.+++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|
T Consensus       202 ~~~t~~~~l~~~~~~~p~~~~a~~~~-~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G  279 (718)
T PRK08043        202 PRETLYEALLSAQYRYGAGKPCIEDV-NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRR  279 (718)
T ss_pred             CCCCHHHHHHHHHHHhCCCCcceEcC-CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcC
Confidence            346899999999999998 5777653 247899999999999999999987 5999999999999999999999999999


Q ss_pred             CeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhc--C-----CCcEEEecccccccccCHHHH-H---Hh--h--
Q 039837          113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKG--L-----GLPIIVLGEERIESAINWSEL-I---EA--A--  177 (544)
Q Consensus       113 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~-~---~~--~--  177 (544)
                      ++++|+++.++.++++++++++++++++++.+..+....  .     ....+.+++.  .....+... .   ..  .  
T Consensus       280 ~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~  357 (718)
T PRK08043        280 RIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDL--KDDVTTADKLWIFAHLLMPRL  357 (718)
T ss_pred             CcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhh--hhhcchhHHHHHHHHHhCCcc
Confidence            999999999999999999999999999998775443110  0     1122222211  011111110 0   00  0  


Q ss_pred             --hhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceE
Q 039837          178 --DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV  255 (544)
Q Consensus       178 --~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~  255 (544)
                        ............+||||||.||||++||+++.+.+.+....+  ++..+|++++.+|++|.+|+...++.++..|+++
T Consensus       358 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~v  435 (718)
T PRK08043        358 AQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA--DFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEV  435 (718)
T ss_pred             ccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh--CCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEE
Confidence              011123334567999999999999999999999887776665  7788999999999999999877788999999999


Q ss_pred             EEcCc-cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEec
Q 039837          256 VMMNR-FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEA  334 (544)
Q Consensus       256 ~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  334 (544)
                      ++.+. .++..+.+.+.++++|++.++|+++..+.+..  ...++++++.  +++||+++++++.++|.+.| ++++++.
T Consensus       436 v~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~--i~~gg~~l~~~~~~~~~~~~-g~~l~~~  510 (718)
T PRK08043        436 FLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRY--VVAGAEKLQESTKQLWQDKF-GLRILEG  510 (718)
T ss_pred             EEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEE--EEEeCccCCHHHHHHHHHHc-CCCeecc
Confidence            98764 56778889999999999999999998887642  2345677777  99999999999999999988 8999999


Q ss_pred             ccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCC--hhh-----
Q 039837          335 YGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNN--EEE-----  407 (544)
Q Consensus       335 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~--~~~-----  407 (544)
                      ||+||++.+++...    + .....+++|+|++|++++++|. ++.    ++.|||+++|++++.|||++  ++.     
T Consensus       511 YG~TE~~~~~~~~~----~-~~~~~~svG~p~pg~~~~i~d~-~~~----~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~  580 (718)
T PRK08043        511 YGVTECAPVVSINV----P-MAAKPGTVGRILPGMDARLLSV-PGI----EQGGRLQLKGPNIMNGYLRVEKPGVLEVPT  580 (718)
T ss_pred             cCcccccceEEecC----C-cccCCCCCCCcCCCCeeEEecC-CCC----CCceEEEEecCCccccccCCCCcccccccc
Confidence            99999987655332    1 2335689999999999999984 332    56699999999999999983  442     


Q ss_pred             --hhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEE
Q 039837          408 --TARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACV  485 (544)
Q Consensus       408 --~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v  485 (544)
                        +...+..+|||+|||+|++|+||++++.||.+|+||++|++|+|.+||+++.+++.+.+++|++.+++..++.+++++
T Consensus       581 ~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~  660 (718)
T PRK08043        581 AENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFT  660 (718)
T ss_pred             cccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEE
Confidence              222233579999999999999999999999999999999999999999999999988888899888888888877765


Q ss_pred             EeCCCCCCCHHHHHHHHHhc-ccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          486 VMNPNAKESEDDIMDFVASN-VATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       486 ~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      .   +...+.+++.++++++ |+.|++|..++++++||+|++||++|++|++++.+
T Consensus       661 ~---~~~~~~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~  713 (718)
T PRK08043        661 T---DSELTREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE  713 (718)
T ss_pred             c---CcccCHHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhc
Confidence            3   3446778899999987 99999999999999999999999999999998753

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.2e-65  Score=526.46  Aligned_cols=494  Identities=28%  Similarity=0.414  Sum_probs=419.7

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      +.|+.++|.++++++|+++|+++.  ++.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~   88 (524)
T PRK06188         11 GATYGHLLVSALKRYPDRPALVLG--DTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLR   88 (524)
T ss_pred             CccHHHHHHHHHHHCCCCeEEEEC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCE
Confidence            448999999999999999999986  689999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccc-hHHHhhcCC-----Cc-EEEecccccccccCHHHHHH-hh-----hhcC
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAP-IYEKVKGLG-----LP-IIVLGEERIESAINWSELIE-AA-----DKAG  181 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~-~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~-~~-----~~~~  181 (544)
                      ++++++..+.+++..+++.++++.+++++. .........     .. ++.+....  .......... ..     ....
T Consensus        89 ~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  166 (524)
T PRK06188         89 RTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVP--DGVDLLAAAAKFGPAPLVAAAL  166 (524)
T ss_pred             EEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCcc--chhhHHHhhhccCcccccccCC
Confidence            999999999999999999999999999876 332222111     11 22222110  0000000000 00     0001


Q ss_pred             CCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCcc
Q 039837          182 NNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRF  261 (544)
Q Consensus       182 ~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~  261 (544)
                      ......+.+||||||.||+|.+||.++...+......+  +...+++++..+|++|.+++  .++.++..|+++++.+..
T Consensus       167 ~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~--~~~~~~~~l~~~pl~~~~g~--~~~~~l~~G~~~~~~~~~  242 (524)
T PRK06188        167 PPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW--EWPADPRFLMCTPLSHAGGA--FFLPTLLRGGTVIVLAKF  242 (524)
T ss_pred             CCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc--CCCcCcEEEEecCchhhhhH--HHHHHHHcCCEEEEcCCC
Confidence            11234567899999999999999999999888877776  77889999999999998886  357889999999999989


Q ss_pred             CHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcccc
Q 039837          262 ELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHS  341 (544)
Q Consensus       262 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~  341 (544)
                      ++..+++.++++++|++.++|+++..|++........+++++.  +++||++++++..+.+.+.+ +..+++.||+||++
T Consensus       243 ~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~--~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~  319 (524)
T PRK06188        243 DPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLET--VYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAP  319 (524)
T ss_pred             CHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeE--EEEcCCCCCHHHHHHHHHHh-CchhhheeCccccC
Confidence            9999999999999999999999999999877655566777777  99999999999999998888 77899999999997


Q ss_pred             ccccccCCCC-CCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeec
Q 039837          342 CITLTYGDPA-NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHT  420 (544)
Q Consensus       342 ~~~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~T  420 (544)
                      ..+....... .........++|+|++++.++|+| +++++++.|+.|||+++|+.++.||++++..+...+ .+|||+|
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~T  397 (524)
T PRK06188        320 MVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHT  397 (524)
T ss_pred             CceeecCchhccccccccCCccccccCCcEEEEEc-CCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhh-cCCceee
Confidence            6555432111 111234567899999999999999 568999999999999999999999999999998888 6899999


Q ss_pred             CceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 039837          421 GDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMD  500 (544)
Q Consensus       421 GD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  500 (544)
                      ||+++++++|.+++.||.+|+++++|++++|.+||++|.++++|.+++|++.++...++.+++++++.++...+.+++.+
T Consensus       398 GDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  477 (524)
T PRK06188        398 GDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQA  477 (524)
T ss_pred             cceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998887888999999988777778899999


Q ss_pred             HHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          501 FVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       501 ~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ++++.++.+++|..++++++||+|++||++|++|+++|.+.
T Consensus       478 ~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~~  518 (524)
T PRK06188        478 HVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWEG  518 (524)
T ss_pred             HHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHhh
Confidence            99999999999999999999999999999999999998543

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-64  Score=528.33  Aligned_cols=500  Identities=27%  Similarity=0.413  Sum_probs=413.7

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      ..++.+.|+++|+.+|+++|+.+.  ++.+||.||.+++.++|.+|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        32 ~~~l~~~l~~~a~~~p~~~al~~~--~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  109 (567)
T PRK06178         32 ERPLTEYLRAWARERPQRPAIIFY--GHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAV  109 (567)
T ss_pred             cccHHHHHHHHHHHCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeE
Confidence            368999999999999999999886  689999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC----CcEEEecc--ccccc----------------ccCHHH
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG----LPIIVLGE--ERIES----------------AINWSE  172 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~----~~~~~~~~--~~~~~----------------~~~~~~  172 (544)
                      ++|++|..+..++.+++++++++++++++...+.+....    ...+.+..  .....                ...+.+
T Consensus       110 ~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (567)
T PRK06178        110 HVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAID  189 (567)
T ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEecccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999988766554321    22221110  00000                001111


Q ss_pred             HHHhhh---------hcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHH
Q 039837          173 LIEAAD---------KAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITG  243 (544)
Q Consensus       173 ~~~~~~---------~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~  243 (544)
                      +.....         ...........+||||||.||+|++||+++........... ......++++..+|++|.+|+..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~~~~~g~~~  268 (567)
T PRK06178        190 LLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA-VVGGEDSVFLSFLPEFWIAGENF  268 (567)
T ss_pred             HHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh-ccCCCCcEEEEecchHHHHHHHH
Confidence            111110         01122334568999999999999999999987655443321 15678899999999999999877


Q ss_pred             HHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHH
Q 039837          244 ICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFE  323 (544)
Q Consensus       244 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~  323 (544)
                      .++.++..|+++++.+++++..+++.++++++|.+.++|..+..+.+.......++++++.......++.+++++.+.|.
T Consensus       269 ~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  348 (567)
T PRK06178        269 GLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWR  348 (567)
T ss_pred             HHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHHHHHHH
Confidence            78889999999999998999999999999999999999999999887654444556666652233446899999999999


Q ss_pred             hhcCCCeEE-ecccCccccccccccCCCCCCC--CCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEeccccccc
Q 039837          324 KKFPGVQVQ-EAYGLTEHSCITLTYGDPANPS--AGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQG  400 (544)
Q Consensus       324 ~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~g  400 (544)
                      +.+ +..++ +.||+||++..+..........  .....+++|+|++|++++++|++++.+++.|+.|||+++|++++.|
T Consensus       349 ~~~-g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~g  427 (567)
T PRK06178        349 ALT-GSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKG  427 (567)
T ss_pred             HHh-CCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCccccc
Confidence            988 55555 5799999986544322111110  1234567999999999999997789999999999999999999999


Q ss_pred             ccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCce
Q 039837          401 YYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEI  480 (544)
Q Consensus       401 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~  480 (544)
                      |+++++.+...+ .+|||+|||+++++++|++++.||.+|+|+++|.+++|.+||+++.++++|.++++++.++...++.
T Consensus       428 Y~~~~~~~~~~~-~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~  506 (567)
T PRK06178        428 YWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQV  506 (567)
T ss_pred             ccCChhhhhhcc-cCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcc
Confidence            999999998777 5789999999999999999999999999999999999999999999999999999999988878888


Q ss_pred             eEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          481 PAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       481 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      +++++++.++...+.+++.++++++++.+++|. +++++++|+|++||++|++|++++++
T Consensus       507 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~  565 (567)
T PRK06178        507 PVAFVQLKPGADLTAAALQAWCRENMAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEE  565 (567)
T ss_pred             eEEEEEeCCCCcCCHHHHHHHHHhcCcccCCce-EEEeccCCCCCccceeHHHHHHHHHh
Confidence            999999887767788999999999999999997 78889999999999999999998865

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=3e-65  Score=536.33  Aligned_cols=492  Identities=18%  Similarity=0.253  Sum_probs=397.9

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG  112 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G  112 (544)
                      ....|+.+.|.++++++|+++|+++.  ++++||+||.++++++|.+|.+.|+++||+|+++++|+.+++++++||+++|
T Consensus        34 ~~~~tl~~~l~~~a~~~p~~~Ai~~~--~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G  111 (600)
T PRK08279         34 DSKRSLGDVFEEAAARHPDRPALLFE--DQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLG  111 (600)
T ss_pred             CCcccHHHHHHHHHHhCCCCcEEEeC--CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence            34569999999999999999999986  6899999999999999999999999999999999999999999999999999


Q ss_pred             CeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-----CcEEEe-cccccccccCHHHHHHhhhh-------
Q 039837          113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----LPIIVL-GEERIESAINWSELIEAADK-------  179 (544)
Q Consensus       113 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~-------  179 (544)
                      ++++++++.++.+++.++++.++++++|++.+..+.+....     ...+.. ++........+.++......       
T Consensus       112 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (600)
T PRK08279        112 AVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPA  191 (600)
T ss_pred             cEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHhhhcccCCccCCC
Confidence            99999999999999999999999999999987766554321     111222 11111011222222221100       


Q ss_pred             ----cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceE
Q 039837          180 ----AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV  255 (544)
Q Consensus       180 ----~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~  255 (544)
                          ........+.+||||||.||||++||+++.+.+.+....+  ++.++++++..+|++|.+|+...++.++..|+++
T Consensus       192 ~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~  269 (600)
T PRK08279        192 SRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL--RLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATL  269 (600)
T ss_pred             cccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc--CCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEE
Confidence                0112234568999999999999999999999998877766  7889999999999999999977888889999999


Q ss_pred             EEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecc
Q 039837          256 VMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAY  335 (544)
Q Consensus       256 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  335 (544)
                      ++.+.+++..+++.++++++|++..+|+++..+++..........+  +  .+++|+.++++++++|.+.|+...+++.|
T Consensus       270 v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~--l--~~~~g~~l~~~~~~~~~~~~~~~~l~~~Y  345 (600)
T PRK08279        270 ALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHR--L--RLMIGNGLRPDIWDEFQQRFGIPRILEFY  345 (600)
T ss_pred             EEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcc--e--eEEecCCCCHHHHHHHHHHhCcceeeeee
Confidence            9999899999999999999999999999999998765433322333  4  23457889999999999999656799999


Q ss_pred             cCccccccccccCCCCCCCCCCCCCcccccCC----CceEEEEeCC--------CC--CcCCCCCCceEE--Eecccccc
Q 039837          336 GLTEHSCITLTYGDPANPSAGSKKNSVGFILP----NLEVKFINPE--------TG--KSLPSNTPGELC--VRSQCVMQ  399 (544)
Q Consensus       336 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~----~~~~~i~d~~--------~~--~~~~~g~~Gel~--v~~~~~~~  399 (544)
                      |+||++......        ....+++|.+.+    +..+...+.+        ++  ..++.|+.|||+  +.|+.++.
T Consensus       346 G~tE~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~  417 (600)
T PRK08279        346 AASEGNVGFINV--------FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFD  417 (600)
T ss_pred             cccccceeeccc--------CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccc
Confidence            999988543321        123345666555    3332222211        22  357889999998  77999999


Q ss_pred             cccCChhhhhccc------CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeec
Q 039837          400 GYYNNEEETARTI------DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLP  473 (544)
Q Consensus       400 gy~~~~~~~~~~~------~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~  473 (544)
                      || +++..+...+      ..++||+|||+|++++||++++.||.+|+||++|++|+|.+||++|.++|+|.+++|++++
T Consensus       418 GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~  496 (600)
T PRK08279        418 GY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVE  496 (600)
T ss_pred             cc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEee
Confidence            99 8888877654      2468999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCC-CceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          474 DEEA-GEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       474 ~~~~-~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ++.. +...+++++..++...+.+++.++++++|+.|++|..++++++||+|.+||++|++|++++.++
T Consensus       497 ~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  565 (600)
T PRK08279        497 VPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDP  565 (600)
T ss_pred             cCCCCCccceeEEEecCCccCCHHHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCc
Confidence            6543 4445566666655567889999999999999999999999999999999999999999987654

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.2e-64  Score=525.78  Aligned_cols=493  Identities=29%  Similarity=0.505  Sum_probs=409.4

Q ss_pred             CCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           34 ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        34 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      ...|+.++|.++|+++|+++|+++.  ++.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        21 ~~~~i~~~l~~~a~~~p~~~a~~~~--~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~   98 (557)
T PRK07059         21 QYPSLADLLEESFRQYADRPAFICM--GKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGY   98 (557)
T ss_pred             CCCCHHHHHHHHHHHcCCCceEEEc--CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCe
Confidence            3468999999999999999999986  68999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC----CCcEEEeccc-------------------------cc
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----GLPIIVLGEE-------------------------RI  164 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~~~-------------------------~~  164 (544)
                      +++|+++.++.+++.++++.++++++++++.....+...    ..+.+.+...                         ..
T Consensus        99 ~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (557)
T PRK07059         99 VVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSL  178 (557)
T ss_pred             EEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccccccccccccccccCC
Confidence            999999999999999999999999999987765443321    1111111100                         00


Q ss_pred             ccccCHHHHHHhhhh-------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCC--c---ccCccEEEEe
Q 039837          165 ESAINWSELIEAADK-------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVP--E---MIGQVTTLGL  232 (544)
Q Consensus       165 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~--~---~~~~~~~~~~  232 (544)
                      .....+.+.......       ......+.+.+||||||.||+|+++|.++..++......+..  .   ......++..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (557)
T PRK07059        179 PGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCA  258 (557)
T ss_pred             CCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEe
Confidence            111223333222111       112233457889999999999999999998765433222110  1   1124567888


Q ss_pred             cchhHHHHHHHHHHhhHhccceEEEcC-ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEec
Q 039837          233 IPFFHIYGITGICCATLRNKGKVVMMN-RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAA  311 (544)
Q Consensus       233 ~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G  311 (544)
                      +|++|.+++....+.++..|++.++.+ ..++..+++.++++++|.+.++|+++..+.+.......++++++.  ++.||
T Consensus       259 ~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~--~~~gg  336 (557)
T PRK07059        259 LPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIV--ANGGG  336 (557)
T ss_pred             CCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheE--EEecc
Confidence            999999887667777888888876655 457889999999999999999999999998876655556677777  99999


Q ss_pred             CCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEE
Q 039837          312 APLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELC  391 (544)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~  391 (544)
                      +++++.+.++|.+.+ ++++++.||+||++.++....    ........++|.|+++++++++| +++++++.|+.|||+
T Consensus       337 ~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~----~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Gel~  410 (557)
T PRK07059        337 MAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNP----VDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEIC  410 (557)
T ss_pred             ccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCC----CCCCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceEEE
Confidence            999999999999988 899999999999987665432    11223457899999999999999 678999999999999


Q ss_pred             EecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEe
Q 039837          392 VRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS  471 (544)
Q Consensus       392 v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~  471 (544)
                      ++|+.++.||+++++.+...+..+|||+|||+++++++|.+++.||.+|+++++|.+++|.+||++|.++++|.+++|++
T Consensus       411 v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~  490 (557)
T PRK07059        411 IRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVG  490 (557)
T ss_pred             EeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEe
Confidence            99999999999999999988878999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 039837          472 LPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK  537 (544)
Q Consensus       472 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~  537 (544)
                      .++...++.++++++... ...+.+++.++++++++.+++|..+++++++|+|.+||++|++|+++
T Consensus       491 ~~~~~~ge~~~~~v~~~~-~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        491 VPDEHSGEAVKLFVVKKD-PALTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRDG  555 (557)
T ss_pred             cccCCCCeeEEEEEEeCC-CCCCHHHHHHHHHHhcccccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence            998888888888888654 34677899999999999999999999999999999999999999874

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-64  Score=524.72  Aligned_cols=494  Identities=22%  Similarity=0.372  Sum_probs=405.9

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEccC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAVS--GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      .++.++|.++|..+|++.++.+...  .+.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~   89 (539)
T PRK07008         10 LLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGA   89 (539)
T ss_pred             CCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence            4789999999999999999876422  26899999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-----CcE-EEecccc-----cccccCHHHHHHhhhh---
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----LPI-IVLGEER-----IESAINWSELIEAADK---  179 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~~-~~~~~~~-----~~~~~~~~~~~~~~~~---  179 (544)
                      +++|+++.++.+++..+++.+++++++++.+..+.+.+..     +.. +.+....     ......++++......   
T Consensus        90 ~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  169 (539)
T PRK07008         90 VCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQDGDYD  169 (539)
T ss_pred             EEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhcccCCCcC
Confidence            9999999999999999999999999999887655443321     111 2221111     0112334444322111   


Q ss_pred             ---cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHH--hhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccce
Q 039837          180 ---AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLC--STLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGK  254 (544)
Q Consensus       180 ---~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~  254 (544)
                         ..........+||||||.||+|++||++++....  .....+  +...+++++...|++|.+++ ...+.++..|++
T Consensus       170 ~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~--~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~  246 (539)
T PRK07008        170 WPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM--GLSARDAVLPVVPMFHVNAW-GLPYSAPLTGAK  246 (539)
T ss_pred             cccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc--CCCCCceEEecCchHHhhhH-HHHHHHHhcCce
Confidence               1112233567999999999999999999865432  222334  67788999999999998776 445677889999


Q ss_pred             EEEcC-ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEe
Q 039837          255 VVMMN-RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQE  333 (544)
Q Consensus       255 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~  333 (544)
                      +++.. .+++..+++.++++++|++.++|+++..|++.......++++++.  ++++|++++++++++|.+.+ ++.+++
T Consensus       247 ~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~--~~~~G~~l~~~~~~~~~~~~-~~~l~~  323 (539)
T PRK07008        247 LVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRR--TVIGGSACPPAMIRTFEDEY-GVEVIH  323 (539)
T ss_pred             EEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceE--EEEcCCCCCHHHHHHHHHHh-CCceec
Confidence            99864 568999999999999999999999999999876655566777776  99999999999999999988 899999


Q ss_pred             cccCccccccccccCCCCCC------CCCCCCCcccccCCCceEEEEeCCCCCcCCCC--CCceEEEecccccccccCCh
Q 039837          334 AYGLTEHSCITLTYGDPANP------SAGSKKNSVGFILPNLEVKFINPETGKSLPSN--TPGELCVRSQCVMQGYYNNE  405 (544)
Q Consensus       334 ~yG~tE~~~~~~~~~~~~~~------~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~  405 (544)
                      .||+||++..+.........      .......++|+|++++.++|+| +++..++.+  +.|||+++|+.++.||++++
T Consensus       324 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~  402 (539)
T PRK07008        324 AWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGD  402 (539)
T ss_pred             ccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCCh
Confidence            99999998755433211000      0011246789999999999999 577777653  57999999999999999988


Q ss_pred             hhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEE
Q 039837          406 EETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACV  485 (544)
Q Consensus       406 ~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v  485 (544)
                      ..   .+ .+|||+|||++++++||++++.||.+|+|+.+|.+++|.+||++|.++|.|.++++++.++...++.+++++
T Consensus       403 ~~---~~-~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v  478 (539)
T PRK07008        403 AS---PL-VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVV  478 (539)
T ss_pred             hh---hh-cCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEE
Confidence            42   23 368999999999999999999999999999999999999999999999999999999999887788889998


Q ss_pred             EeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          486 VMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       486 ~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      +..++...+.+++.++++++++++++|..++++++||+|.+||++|++|+++|.+
T Consensus       479 ~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~  533 (539)
T PRK07008        479 VKRPGAEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRD  533 (539)
T ss_pred             EeCCCCccCHHHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHh
Confidence            8877766788999999999999999999999999999999999999999998864

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.8e-65  Score=523.72  Aligned_cols=479  Identities=22%  Similarity=0.325  Sum_probs=402.0

Q ss_pred             CCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           34 ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        34 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      ...|+.+.|.++|+.+|+++|+.+.  ++.+||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+
T Consensus        33 ~~~~~~~~~~~~a~~~p~~~a~~~~--~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~  110 (516)
T PRK13383         33 GGTNPYTLLAVTAARWPGRTAIIDD--DGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGA  110 (516)
T ss_pred             cCCcHHHHHHHHHHHCCCCcEEEeC--CCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCe
Confidence            4678999999999999999999885  67899999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhhhcCCCCCCCCCCCCC
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQT  193 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsg  193 (544)
                      +++|+++.++.+++.++++.+++++++++++....+......+..++.....    ...  .............+.+|||
T Consensus       111 v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~p~~~~~~~~il~TSG  184 (516)
T PRK13383        111 DVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPATAG----AEE--SGGRPAVAAPGRIVLLTSG  184 (516)
T ss_pred             EEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhcceEEeccchhh----hhc--CCCCCCCCCCCcEEEECCC
Confidence            9999999999999999999999999999887766655433333333211100    000  0000111222346789999


Q ss_pred             CCcCcceeeccHHHHHHHH--HhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHH
Q 039837          194 DLWISKGVMLTHRNLVANL--CSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI  271 (544)
Q Consensus       194 ttG~PKgV~~t~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~  271 (544)
                      |||.||+|++||.......  ......+  ++..+++++..+|++|.+|+ ..++.++..|+++++...+++..+++.++
T Consensus       185 TTG~PK~v~~s~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~pl~h~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~  261 (516)
T PRK13383        185 TTGKPKGVPRAPQLRSAVGVWVTILDRT--RLRTGSRISVAMPMFHGLGL-GMLMLTIALGGTVLTHRHFDAEAALAQAS  261 (516)
T ss_pred             CCCCCCeeeecchhhhhhhhHHhHHhhh--ccCCCCeEEEecCCcchhhH-HHHHHHHhcCCEEEECCCCCHHHHHHHHH
Confidence            9999999999997432221  1112222  56788999999999999998 55677899999999988889999999999


Q ss_pred             HcCceeeecchHHHHHHhcCCCC--CccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCC
Q 039837          272 THEVTFAPIVPPIILSLVKDPIV--DEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGD  349 (544)
Q Consensus       272 ~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~  349 (544)
                      ++++|.+.++|+++..|.+....  ....+++++.  +++||+++++++.++|.+.| +..+++.||+||++..+.... 
T Consensus       262 ~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~--i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~-  337 (516)
T PRK13383        262 LHRADAFTAVPVVLARILELPPRVRARNPLPQLRV--VMSSGDRLDPTLGQRFMDTY-GDILYNGYGSTEVGIGALATP-  337 (516)
T ss_pred             HhCCcEEEecHHHHHHHHhccccccccCCCCceEE--EEECCCCCCHHHHHHHHHHc-Cchhhhcccccccccceeccc-
Confidence            99999999999999999875432  1234566666  99999999999999999999 788999999999986554332 


Q ss_pred             CCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCC
Q 039837          350 PANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDD  429 (544)
Q Consensus       350 ~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~  429 (544)
                         .......+++|+|+++++++|+| +++++++.|+.|||+++|+.++.||++++..   .+ .+|||+|||+|+++++
T Consensus       338 ---~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~---~~-~~g~~~TGDl~~~d~~  409 (516)
T PRK13383        338 ---ADLRDAPETVGKPVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTRYTDGGGK---AV-VDGMTSTGDMGYLDNA  409 (516)
T ss_pred             ---cccccCCCcccCCCCCcEEEEEC-CCCCCCCCCCceEEEEecCcccccccCCchh---he-ecCceecceeEEEcCC
Confidence               11223457899999999999999 5789999999999999999999999987642   22 5799999999999999


Q ss_pred             CcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 039837          430 GDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATY  509 (544)
Q Consensus       430 g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~  509 (544)
                      |++++.||.+|+||++|.+|+|.+||++|.++|.|.+++++++++...++.+.++++..++...+.+++.++++++++++
T Consensus       410 G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~  489 (516)
T PRK13383        410 GRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRF  489 (516)
T ss_pred             ccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHHhcccC
Confidence            99999999999999999999999999999999999999999999888889999999988776677889999999999999


Q ss_pred             CceeEEEEeecCCCCCCcccchHHHH
Q 039837          510 KKVRVLHFVDGIPKSHSGKIMRRILK  535 (544)
Q Consensus       510 ~~p~~~~~~~~~P~t~~GKi~r~~l~  535 (544)
                      ++|..++++++||+|.+||++|++|+
T Consensus       490 ~~p~~i~~v~~iP~t~~gKi~r~~L~  515 (516)
T PRK13383        490 EQPRDINIVSSIPRNPTGKVLRKELP  515 (516)
T ss_pred             CCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence            99999999999999999999999874

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=9.3e-65  Score=572.62  Aligned_cols=498  Identities=25%  Similarity=0.349  Sum_probs=417.9

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG  112 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G  112 (544)
                      +...++.+.+.++|+++|+++|+++. .++++||+||.++++++|+.|++ ++++||+|+++++|+++++++++||+++|
T Consensus       612 ~~~~~l~~~~~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G  689 (1146)
T PRK08633        612 EALPPLAEAWIDTAKRNWSRLAVADS-TGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAG  689 (1146)
T ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEcC-CCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcC
Confidence            34468999999999999999999874 35799999999999999999987 48999999999999999999999999999


Q ss_pred             CeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC--------CCcEEEecccccccccC---HHHHHHh-----
Q 039837          113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL--------GLPIIVLGEERIESAIN---WSELIEA-----  176 (544)
Q Consensus       113 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~---~~~~~~~-----  176 (544)
                      ++++|+++..+.+++.++++++++++++++++..+.+...        ..+++..++. ......   +......     
T Consensus       690 ~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  768 (1146)
T PRK08633        690 KVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDL-KAKISKVDKLTALLAARLLPA  768 (1146)
T ss_pred             CEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehh-ccccchhHHHHHHHHhccCCH
Confidence            9999999999999999999999999999998776665421        1122222211 011111   1111000     


Q ss_pred             -------hhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhH
Q 039837          177 -------ADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATL  249 (544)
Q Consensus       177 -------~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l  249 (544)
                             .............+||||||.||||.+||+++.+.+......+  +..++|++++.+|++|.+|+...++.++
T Consensus       769 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~--~~~~~d~~l~~~p~~h~~g~~~~~~~~l  846 (1146)
T PRK08633        769 RLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF--NLRNDDVILSSLPFFHSFGLTVTLWLPL  846 (1146)
T ss_pred             HHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc--CCCCCCEEEEcCcHHHHHhHHHHHHHHH
Confidence                   0111223344578999999999999999999999888777766  6788999999999999999877788899


Q ss_pred             hccceEEEcC-ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCC
Q 039837          250 RNKGKVVMMN-RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPG  328 (544)
Q Consensus       250 ~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~  328 (544)
                      ..|+++++.+ ..++..+++.++++++|++.++|++++.+.+.......+++++|.  +++||+++++++.+++.+.+ +
T Consensus       847 ~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--~~~gg~~~~~~~~~~~~~~~-g  923 (1146)
T PRK08633        847 LEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRL--VVAGAEKLKPEVADAFEEKF-G  923 (1146)
T ss_pred             HCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeee--EEEcCCcCCHHHHHHHHHHh-C
Confidence            9999998866 478999999999999999999999999998866555666777777  99999999999999999998 8


Q ss_pred             CeEEecccCccccccccccCCCCCC-----CCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccC
Q 039837          329 VQVQEAYGLTEHSCITLTYGDPANP-----SAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYN  403 (544)
Q Consensus       329 ~~i~~~yG~tE~~~~~~~~~~~~~~-----~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~  403 (544)
                      +++++.||+||++.+++........     ......+++|+|+|+++++|+|++++++++.|+.|||+++|+.++.||++
T Consensus       924 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~ 1003 (1146)
T PRK08633        924 IRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLG 1003 (1146)
T ss_pred             CCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccC
Confidence            9999999999998766543211100     01235678999999999999998889999999999999999999999999


Q ss_pred             ChhhhhcccCC---CCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCC--CccceEEEeecCCCCC
Q 039837          404 NEEETARTIDK---NGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHP--SVEDAAVVSLPDEEAG  478 (544)
Q Consensus       404 ~~~~~~~~~~~---~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~--~v~~~~v~~~~~~~~~  478 (544)
                      +|+.+.+.+..   ++||+|||+|++|+||++++.||.||++|++|++|+|.+||++|.+||  .+.+++|++++++..|
T Consensus      1004 ~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g 1083 (1146)
T PRK08633       1004 DPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKG 1083 (1146)
T ss_pred             CccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCC
Confidence            99998877732   389999999999999999999999999999999999999999999998  4667999999998889


Q ss_pred             ceeEEEEEeCCCCCCCHHHHHHHHHh-cccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          479 EIPAACVVMNPNAKESEDDIMDFVAS-NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       479 ~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      +.++++++.   ...+.+++++++++ .++.+++|..+++++++|+|++||++|++|+++.++.
T Consensus      1084 ~~~~~~v~~---~~~~~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633       1084 EKLVVLHTC---GAEDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred             cEEEEEEec---CccCHHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence            998888875   24567889988875 6999999999999999999999999999999986553

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.7e-64  Score=521.95  Aligned_cols=496  Identities=24%  Similarity=0.365  Sum_probs=406.8

Q ss_pred             CCCCHHHHHHhhhhhcCCceEEEEccC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHh
Q 039837           34 ENVTLPDFVLQDAELYADKVAFVEAVS--GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAA  111 (544)
Q Consensus        34 ~~~~l~~~l~~~a~~~p~~~a~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~  111 (544)
                      .+.|+.++|+++|+++|++++++....  .+++||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~   87 (542)
T PRK06018          8 WPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGI   87 (542)
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhc
Confidence            457999999999999999999985322  378999999999999999999999999999999999999999999999999


Q ss_pred             cCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-----CCc-EEEecccc------cccccCHHHHHHhhhh
Q 039837          112 GGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-----GLP-IIVLGEER------IESAINWSELIEAADK  179 (544)
Q Consensus       112 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~~~------~~~~~~~~~~~~~~~~  179 (544)
                      |++++|+++.++.+++..+++.+++++++++.+....+.+.     ... ++.+.+..      ......+.++......
T Consensus        88 G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (542)
T PRK06018         88 GAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEADG  167 (542)
T ss_pred             CeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhccCCc
Confidence            99999999999999999999999999999988765544321     122 22222111      0112234443322111


Q ss_pred             c------CCCCCCCCCCCCCCCcCcceeeccHHHHH-HH-HHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhc
Q 039837          180 A------GNNFSNDDDVKQTDLWISKGVMLTHRNLV-AN-LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRN  251 (544)
Q Consensus       180 ~------~~~~~~~~~~tsgttG~PKgV~~t~~~l~-~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  251 (544)
                      .      .........+||||||.||||++||++.. +. .......+  ++..+++++...|++|.+++. ..+.++..
T Consensus       168 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~p~~h~~~~~-~~~~~~~~  244 (542)
T PRK06018        168 DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL--GTSAADTMLPVVPLFHANSWG-IAFSAPSM  244 (542)
T ss_pred             ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc--CCCCCCEEEEecCHHHHhhhH-HHHhhhhc
Confidence            1      11223356789999999999999999743 22 22223333  677889999999999998874 44567889


Q ss_pred             cceEEEcC-ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCe
Q 039837          252 KGKVVMMN-RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQ  330 (544)
Q Consensus       252 G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~  330 (544)
                      |+++++.. .+++..+++.++++++|++.++|+++..|.+.......++++++.  ++++|+++++++.++|++ + +++
T Consensus       245 g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~--~~~~G~~l~~~~~~~~~~-~-~~~  320 (542)
T PRK06018        245 GTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKM--VVCGGSAMPRSMIKAFED-M-GVE  320 (542)
T ss_pred             CceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceE--EEEcCCCCCHHHHHHHHH-h-CCC
Confidence            99998864 568899999999999999999999999998776555556677777  999999999999999999 6 899


Q ss_pred             EEecccCccccccccccCCCCCCC------CCCCCCcccccCCCceEEEEeCCCCCcCCCC--CCceEEEeccccccccc
Q 039837          331 VQEAYGLTEHSCITLTYGDPANPS------AGSKKNSVGFILPNLEVKFINPETGKSLPSN--TPGELCVRSQCVMQGYY  402 (544)
Q Consensus       331 i~~~yG~tE~~~~~~~~~~~~~~~------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~Gel~v~~~~~~~gy~  402 (544)
                      +++.||+||++.++..........      ......++|+|.++++++|+| ++++.++.+  ..|||+++|+.++.|||
T Consensus       321 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~  399 (542)
T PRK06018        321 VRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYY  399 (542)
T ss_pred             eEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhh
Confidence            999999999987665432111100      011235789999999999999 577777653  67999999999999999


Q ss_pred             CChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeE
Q 039837          403 NNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPA  482 (544)
Q Consensus       403 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~  482 (544)
                      +.   +...++.++||+|||+++++++|++++.||.+|+++++|.++++.+||+++.++|+|.+++|++.++...++.+.
T Consensus       400 ~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~  476 (542)
T PRK06018        400 RV---DGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPL  476 (542)
T ss_pred             cC---cccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeE
Confidence            83   234456789999999999999999999999999999999999999999999999999999999999888788899


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          483 ACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       483 ~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      +++++.++...+.+++.++++++++.+++|..++++++||+|.+||++|++|+++|.+
T Consensus       477 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        477 LIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKD  534 (542)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhc
Confidence            9999888777788999999999999999999999999999999999999999999865

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.6e-65  Score=529.42  Aligned_cols=487  Identities=18%  Similarity=0.251  Sum_probs=376.8

Q ss_pred             CC-HHHHHHhhhhhcCCceEEEEccCC--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc
Q 039837           36 VT-LPDFVLQDAELYADKVAFVEAVSG--KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG  112 (544)
Q Consensus        36 ~~-l~~~l~~~a~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G  112 (544)
                      || +.+.|+++|+++|+++|+++.+.+  +++||+||.++++++|++|.+.  ++||+|+++++|+++++++++||+++|
T Consensus         1 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G   78 (525)
T PRK05851          1 MNELAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAG   78 (525)
T ss_pred             CchHHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcC
Confidence            34 788999999999999999986322  7899999999999999999987  799999999999999999999999999


Q ss_pred             CeeecCCCC-------CCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhhhcCCCCC
Q 039837          113 GVFSGANPT-------AHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFS  185 (544)
Q Consensus       113 ~~~v~l~~~-------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (544)
                      +++++++..       ...+++.+++..+++++++++....+.+......+ .+.+..........   ...........
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~d~  154 (525)
T PRK05851         79 AAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSSV-TVHDLATAAHTNRS---ASLTPPDSGGP  154 (525)
T ss_pred             CCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhccc-cccccccccccccc---ccCCCCCCCCe
Confidence            986544311       22345567789999999999877655443321111 11000000000000   00001122334


Q ss_pred             CCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCccc-CccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc--c-
Q 039837          186 NDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMI-GQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR--F-  261 (544)
Q Consensus       186 ~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~-  261 (544)
                      ..+.+||||||.||||++||+++.+.+......+  +.. .+++++.++|++|.+|+ ..++.++..|+++++.+.  + 
T Consensus       155 a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~~~~~~~~~~~~  231 (525)
T PRK05851        155 AVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV--GLDAATDVGCSWLPLYHDMGL-AFLLTAALAGAPLWLAPTTAFS  231 (525)
T ss_pred             EEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh--CCCCCCCeEEEcCCCccCccH-HHHHHHHHcCCeEEEcCHHHHH
Confidence            4678999999999999999999999888777666  667 88999999999999998 467889999999999763  3 


Q ss_pred             -CHHHHHHHHHHcCceeeecchHHHHHHhcCCC-CCccCccccccccEEEecCCCCHhHHHHHHhh---c--CCCeEEec
Q 039837          262 -ELRAFLDALITHEVTFAPIVPPIILSLVKDPI-VDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKK---F--PGVQVQEA  334 (544)
Q Consensus       262 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~---~--~~~~i~~~  334 (544)
                       ++..+++.+.++++|++...|.++..+.+... ....++++++.  +++||+++++++.++|.+.   +  ++..+++.
T Consensus       232 ~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~--~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~  309 (525)
T PRK05851        232 ASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRV--ALNGGEPVDCDGFERFATAMAPFGFDAGAAAPS  309 (525)
T ss_pred             HCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhhe--eEeccccCCHHHHHHHHHHHhhcCCChhhcccc
Confidence             57789999999999988655544444433221 12345667777  9999999999999999875   2  23469999


Q ss_pred             ccCccccccccccCCCC----------CCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCC
Q 039837          335 YGLTEHSCITLTYGDPA----------NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNN  404 (544)
Q Consensus       335 yG~tE~~~~~~~~~~~~----------~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~  404 (544)
                      ||+||++..+.......          +.......+++|+|++|++++|+|++.+.+++.|+.|||+++|++++.|||++
T Consensus       310 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~  389 (525)
T PRK05851        310 YGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQ  389 (525)
T ss_pred             cchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccC
Confidence            99999976554321100          00011234679999999999999965556789999999999999999999998


Q ss_pred             hhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEE
Q 039837          405 EEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAAC  484 (544)
Q Consensus       405 ~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  484 (544)
                      ++.+     .++||+|||+|+++ +|.++++||.||+||++|++|+|.+||++|.+||+|.+++|++++++..++.+.++
T Consensus       390 ~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~  463 (525)
T PRK05851        390 APID-----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLV  463 (525)
T ss_pred             CccC-----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEE
Confidence            8643     57899999999996 89999999999999999999999999999999999999999999887777777666


Q ss_pred             EEeCCCCCCCHHHHHHHHHhcccCC--CceeEEEEee--cCCCCCCcccchHHHHHHHHH
Q 039837          485 VVMNPNAKESEDDIMDFVASNVATY--KKVRVLHFVD--GIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       485 v~~~~~~~~~~~~l~~~l~~~l~~~--~~p~~~~~~~--~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      ++... ...+.+++.++++++++.+  ++|..+++++  +||+|++||++|++|++.+++
T Consensus       464 v~~~~-~~~~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~~  522 (525)
T PRK05851        464 IAAEF-RGPDEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEA  522 (525)
T ss_pred             EEEEe-cCcchHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcchHHHHHHHHHHHHh
Confidence            65432 2235567777888888776  8999999998  899999999999999998854

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=6.5e-65  Score=533.60  Aligned_cols=491  Identities=20%  Similarity=0.226  Sum_probs=391.6

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEcc---CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHh
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAV---SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAA  111 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~  111 (544)
                      ..|+.+.|.++++++|+++|+.+..   +.+++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++
T Consensus        38 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~  117 (614)
T PRK08180         38 PRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYA  117 (614)
T ss_pred             CccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHc
Confidence            5689999999999999999998641   1268999999999999999999999999999999999999999999999999


Q ss_pred             cCeeecCCCCCC-----HHHHHHHHHhcCceEEEeccc--hHHHhhcC---CCcEEEecccc-cccccCHHHHHHhhh--
Q 039837          112 GGVFSGANPTAH-----ASELKKQVDAADAKLIVSYAP--IYEKVKGL---GLPIIVLGEER-IESAINWSELIEAAD--  178 (544)
Q Consensus       112 G~~~v~l~~~~~-----~~~l~~~l~~~~~~~ii~~~~--~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~--  178 (544)
                      |++++|+++.++     .+++.+++++++++++|++..  ....+...   ....+..+... ......+..+.....  
T Consensus       118 Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  197 (614)
T PRK08180        118 GVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRAATPFAALLATPPTA  197 (614)
T ss_pred             CCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCCCCCcccccHHHHhcccccc
Confidence            999999999998     789999999999999999754  22222211   22233322111 011234444432210  


Q ss_pred             -------hcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhc
Q 039837          179 -------KAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRN  251 (544)
Q Consensus       179 -------~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  251 (544)
                             .........+.+||||||.||||++||+++.+.+......+.......+++++++|++|.+|+...++.++..
T Consensus       198 ~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~  277 (614)
T PRK08180        198 AVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYN  277 (614)
T ss_pred             chhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHhc
Confidence                   1112334467899999999999999999999888776655521112568999999999999987788889999


Q ss_pred             cceEEEcCc-cC---HHHHHHHHHHcCceeeecchHHHHHHhcCCC----CCccCccccccccEEEecCCCCHhHHHHHH
Q 039837          252 KGKVVMMNR-FE---LRAFLDALITHEVTFAPIVPPIILSLVKDPI----VDEFDLSKLQLRAVMTAAAPLAPDLLSSFE  323 (544)
Q Consensus       252 G~~~~~~~~-~~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~  323 (544)
                      |+++++.+. ++   ...+++.++++++|+++++|+++..|++...    .....+++++.  +++||+++++++.+++.
T Consensus       278 G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~--v~~gGa~l~~~~~~~~~  355 (614)
T PRK08180        278 GGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKL--LFYAGAALSQDVWDRLD  355 (614)
T ss_pred             CCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeE--EEEccCCCCHHHHHHHH
Confidence            999998752 33   3467888999999999999999998876422    12234567777  99999999999999998


Q ss_pred             hh----c-CCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEeccccc
Q 039837          324 KK----F-PGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVM  398 (544)
Q Consensus       324 ~~----~-~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~  398 (544)
                      +.    + .++.+++.||+||++.+++....     .....+++|+|++|++++++|+        |..|||+++|++++
T Consensus       356 ~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~-----~~~~~~svG~p~pg~~v~i~d~--------~~~GEi~vrg~~v~  422 (614)
T PRK08180        356 RVAEATCGERIRMMTGLGMTETAPSATFTTG-----PLSRAGNIGLPAPGCEVKLVPV--------GGKLEVRVKGPNVT  422 (614)
T ss_pred             HHHHhhcCCCceeeeeecccccCCceEeccc-----ccCCCCcccCccCCcEEEEecC--------CCCcEEEEecCccc
Confidence            75    3 24789999999999876654321     2345678999999999999983        34599999999999


Q ss_pred             ccccCChhhhhcccCCCCeeecCceEEE----cCCCcEEEEeecCCceee-cceeeC--hHHHHHHHhcCCCccceEEEe
Q 039837          399 QGYYNNEEETARTIDKNGWLHTGDIGYI----DDDGDIFIVDRIKELIKY-KGFQVA--PAELEAILLTHPSVEDAAVVS  471 (544)
Q Consensus       399 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~----~~~g~~~~~GR~~d~i~~-~G~~v~--~~~iE~~l~~~~~v~~~~v~~  471 (544)
                      .|||++|+.|...|+.+|||+|||+|++    +++|++++.||.+|+|++ +|++++  +.++|.++.+||.|.+++|++
T Consensus       423 ~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g  502 (614)
T PRK08180        423 PGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITG  502 (614)
T ss_pred             hhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEc
Confidence            9999999999999988999999999999    468999999999999986 798776  778889999999999999999


Q ss_pred             ecCCCCCceeEEEEEeCCCC---------------CCCHHHHHHHHHhcccCCC--------ceeEEEEeecCCCCC---
Q 039837          472 LPDEEAGEIPAACVVMNPNA---------------KESEDDIMDFVASNVATYK--------KVRVLHFVDGIPKSH---  525 (544)
Q Consensus       472 ~~~~~~~~~~~~~v~~~~~~---------------~~~~~~l~~~l~~~l~~~~--------~p~~~~~~~~~P~t~---  525 (544)
                      .+++    .+.++|++.++.               ..+.+++.+++++.|..++        +|..+++++++|++.   
T Consensus       503 ~~~~----~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk  578 (614)
T PRK08180        503 HDRD----EIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGE  578 (614)
T ss_pred             CCCC----ceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCc
Confidence            8765    567888776541               1244678888888877766        899999999888864   


Q ss_pred             ---CcccchHHHHHHHHHhhhC
Q 039837          526 ---SGKIMRRILKDKMLEKMRK  544 (544)
Q Consensus       526 ---~GKi~r~~l~~~~~~~~~~  544 (544)
                         +||++|+++.+.|+++|++
T Consensus       579 ~t~~~~~~R~~~~~~y~~~i~~  600 (614)
T PRK08180        579 ITDKGYINQRAVLARRAALVEA  600 (614)
T ss_pred             cCccccccHHHHHHHhHHHHHH
Confidence               5688999999999999864

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-64  Score=520.55  Aligned_cols=480  Identities=25%  Similarity=0.378  Sum_probs=389.5

Q ss_pred             HhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCC
Q 039837           43 LQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTA  122 (544)
Q Consensus        43 ~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~  122 (544)
                      ..+|+++|+++|+++..+++++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++++++.+
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~   83 (501)
T PRK13390          4 GTHAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHL   83 (501)
T ss_pred             chhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCC
Confidence            35678899999998764568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCceEEEeccchHHHhhcCC--CcE-EEecccccccccCHHHHHHhhhhc--CCCCCCCCCCCCCCCcC
Q 039837          123 HASELKKQVDAADAKLIVSYAPIYEKVKGLG--LPI-IVLGEERIESAINWSELIEAADKA--GNNFSNDDDVKQTDLWI  197 (544)
Q Consensus       123 ~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~tsgttG~  197 (544)
                      +.+++.+++..+++++++++...........  ... +.+. ........++.........  .......+.+||||||.
T Consensus        84 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~  162 (501)
T PRK13390         84 TAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFG-GEIDGFGSFEAALAGAGPRLTEQPCGAVMLYSSGTTGF  162 (501)
T ss_pred             CHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEEEec-CcccccccHHHHhcccCCCCCCCcccEEEEeCCCCCCC
Confidence            9999999999999999999876543322211  111 1111 1111112233222211110  11122467899999999


Q ss_pred             cceeec--cHHHHHHHHH----hhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHH
Q 039837          198 SKGVML--THRNLVANLC----STLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI  271 (544)
Q Consensus       198 PKgV~~--t~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~  271 (544)
                      ||||++  +|.++.....    .....+  .+...++++..+|++|.+++... +..+..|+++++.+.+++..+++.++
T Consensus       163 PKgV~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~h~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~i~  239 (501)
T PRK13390        163 PKGIQPDLPGRDVDAPGDPIVAIARAFY--DISESDIYYSSAPIYHAAPLRWC-SMVHALGGTVVLAKRFDAQATLGHVE  239 (501)
T ss_pred             CCEEEeeccccccccchhhhHhhHHHHh--CCCCCCeEEecccchhhhHHHHH-HHHHhcCceEEEcCCcCHHHHHHHHH
Confidence            999995  5555443211    111223  56788999999999999887443 34567899999988889999999999


Q ss_pred             HcCceeeecchHHHHHHhcCCCC--CccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCC
Q 039837          272 THEVTFAPIVPPIILSLVKDPIV--DEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGD  349 (544)
Q Consensus       272 ~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~  349 (544)
                      ++++|++.++|+++..|++....  ...++++++.  ++.+|+++++++.+.+.+.+ +..+++.||+||++.++.... 
T Consensus       240 ~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~--v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~-  315 (501)
T PRK13390        240 RYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRA--VIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTEAHGMTFIDS-  315 (501)
T ss_pred             HcCCeEEEecHHHHHHHHhccchhcccCChhhhhe--EEEcCCCCCHHHHHHHHHhc-CCceeeeecccccCceEEecc-
Confidence            99999999999999998865432  2344566666  99999999999999999987 788999999999986543321 


Q ss_pred             CCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCC--CCeeecCceEEEc
Q 039837          350 PANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDK--NGWLHTGDIGYID  427 (544)
Q Consensus       350 ~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~  427 (544)
                         .......+++|+|+++ .++++| +++++++.|+.|||+++|++++.||+++++.+...+..  ++|++|||+|+++
T Consensus       316 ---~~~~~~~~~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~  390 (501)
T PRK13390        316 ---PDWLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVD  390 (501)
T ss_pred             ---hhhccCCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEEC
Confidence               1122345689999999 799999 68899999999999999999999999999999877643  6799999999999


Q ss_pred             CCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCC---HHHHHHHHHh
Q 039837          428 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES---EDDIMDFVAS  504 (544)
Q Consensus       428 ~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~  504 (544)
                      ++|.+++.||.+|++|++|.+|+|.+||++|.++|.|.+++|+++++...++.+++++++.++...+   .+++.+++++
T Consensus       391 ~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~  470 (501)
T PRK13390        391 EDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRS  470 (501)
T ss_pred             CCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999888888999998877654333   3688999999


Q ss_pred             cccCCCceeEEEEeecCCCCCCcccchHHHH
Q 039837          505 NVATYKKVRVLHFVDGIPKSHSGKIMRRILK  535 (544)
Q Consensus       505 ~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~  535 (544)
                      +|+.+++|..++++++||+|++||++|++|+
T Consensus       471 ~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~  501 (501)
T PRK13390        471 RIAHYKAPRSVEFVDELPRTPTGKLVKGLLR  501 (501)
T ss_pred             hcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence            9999999999999999999999999999874

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.1e-64  Score=525.14  Aligned_cols=501  Identities=22%  Similarity=0.352  Sum_probs=407.5

Q ss_pred             CCCCHHHHHHhhhhhcCCceEEEEc-cCCceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCccHHHHHHHHHHh
Q 039837           34 ENVTLPDFVLQDAELYADKVAFVEA-VSGKAYTYAQVARDTRGFAKALRS-LGLRKGQVVIVVLPNVAEYGIVALGIMAA  111 (544)
Q Consensus        34 ~~~~l~~~l~~~a~~~p~~~a~~~~-~~~~~~Ty~el~~~~~~la~~L~~-~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~  111 (544)
                      .++|+.++|+.+|..+|+++|+++. .+++.+||+||.+++.++|.+|.+ .|+++||+|+++++|+.+++++++||+++
T Consensus         8 ~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~   87 (576)
T PRK05620          8 VPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACM   87 (576)
T ss_pred             CCCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhc
Confidence            3468999999999999999998764 234789999999999999999986 79999999999999999999999999999


Q ss_pred             cCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-----Cc-EEEeccccc----------ccccCHHHHHH
Q 039837          112 GGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----LP-IIVLGEERI----------ESAINWSELIE  175 (544)
Q Consensus       112 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~-~~~~~~~~~----------~~~~~~~~~~~  175 (544)
                      |++++++++.++.+++.++++.++++++|+++...+.+.+..     .+ ++.++....          .....+..+..
T Consensus        88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  167 (576)
T PRK05620         88 GAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD  167 (576)
T ss_pred             CCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhh
Confidence            999999999999999999999999999999987665543321     12 222221110          11223555543


Q ss_pred             hhhh------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhH
Q 039837          176 AADK------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATL  249 (544)
Q Consensus       176 ~~~~------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l  249 (544)
                      ....      ..........+||||||.||||++||+++..............+..+++++..+|++|.+++ ...+.++
T Consensus       168 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~-~~~~~~l  246 (576)
T PRK05620        168 GRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSW-GVPLAAF  246 (576)
T ss_pred             cCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhh-HHHHHHH
Confidence            2111      01122345678999999999999999998665443221111267788999999999999998 4567889


Q ss_pred             hccceEEEcC-ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCC
Q 039837          250 RNKGKVVMMN-RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPG  328 (544)
Q Consensus       250 ~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~  328 (544)
                      ..|+++++.. .+++..+++.++++++|++.++|+++..|+...........+++.  +++||+++++++.++|.+.+ +
T Consensus       247 ~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~--~~~gG~~~~~~~~~~~~~~~-~  323 (576)
T PRK05620        247 MSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQE--IYVGGSAVPPILIKAWEERY-G  323 (576)
T ss_pred             hcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeE--EEEcCCCCCHHHHHHHHHHh-C
Confidence            9999998875 578999999999999999999999999887654322333345555  99999999999999999988 7


Q ss_pred             CeEEecccCccccccccccCCCCCCC---CCCCCCcccccCCCceEEEEeCCCCCcCC--CCCCceEEEecccccccccC
Q 039837          329 VQVQEAYGLTEHSCITLTYGDPANPS---AGSKKNSVGFILPNLEVKFINPETGKSLP--SNTPGELCVRSQCVMQGYYN  403 (544)
Q Consensus       329 ~~i~~~yG~tE~~~~~~~~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~--~g~~Gel~v~~~~~~~gy~~  403 (544)
                      +++++.||+||++..+..........   ......+.|++.++++++++| + +..++  ++..|||+++|+.++.|||+
T Consensus       324 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~  401 (576)
T PRK05620        324 VDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYH  401 (576)
T ss_pred             CceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccC
Confidence            89999999999987655432111000   011234789999999999998 4 66553  57889999999999999999


Q ss_pred             Chhhh----------------hcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccce
Q 039837          404 NEEET----------------ARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDA  467 (544)
Q Consensus       404 ~~~~~----------------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  467 (544)
                      +++.+                ...+..++||+|||++++++||.+++.||.+|+|+.+|.++++.+||++|.++|.|.++
T Consensus       402 ~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~  481 (576)
T PRK05620        402 SPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVEC  481 (576)
T ss_pred             CccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEE
Confidence            99877                23344678999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCCceeEEEEEeCCCCC---CCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          468 AVVSLPDEEAGEIPAACVVMNPNAK---ESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       468 ~v~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      +|++.++...|+.+++++++.++..   .+.++++++++++|+++++|..++++++||+|.+||++|++|++++.+
T Consensus       482 ~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~~~~~~  557 (576)
T PRK05620        482 AVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQHLAD  557 (576)
T ss_pred             EEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCcHHHHHHHHhc
Confidence            9999998888889999998877643   356899999999999999999999999999999999999999999874

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=8.6e-65  Score=532.94  Aligned_cols=495  Identities=22%  Similarity=0.365  Sum_probs=386.0

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEcc-------CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHH
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEAV-------SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA  105 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~-------~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~  105 (544)
                      +..+|+.+++.++++.+|+++|+++.+       ..+.+||+||.++++++|++|.+. +++||+|+++++|++++++++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~  109 (612)
T PRK12476         31 PPGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGF  109 (612)
T ss_pred             CccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHH
Confidence            445789999999999999999998632       124899999999999999999986 999999999999999999999


Q ss_pred             HHHHHhcCeeecC-CCCCC--HHHHHHHHHhcCceEEEeccchHHHhhcC----C----CcEEEecccccccccCHHHHH
Q 039837          106 LGIMAAGGVFSGA-NPTAH--ASELKKQVDAADAKLIVSYAPIYEKVKGL----G----LPIIVLGEERIESAINWSELI  174 (544)
Q Consensus       106 lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~  174 (544)
                      +||+++|++++|+ ++.++  .+++.++++.+++++++++++....+...    .    ..++.++.......   ... 
T Consensus       110 lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~-  185 (612)
T PRK12476        110 FAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPDSAG---ESF-  185 (612)
T ss_pred             HHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEecccccccc---ccc-
Confidence            9999999999999 57766  78999999999999999987765544321    1    12222221100000   000 


Q ss_pred             HhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCc-ccCccEEEEecchhHHHHHHHHHHhhHhccc
Q 039837          175 EAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPE-MIGQVTTLGLIPFFHIYGITGICCATLRNKG  253 (544)
Q Consensus       175 ~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~  253 (544)
                      .. ..........+.+||||||.||||++||+++.+++......+  + +.+++++++++|++|.+|+...++.++..|.
T Consensus       186 ~~-~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~  262 (612)
T PRK12476        186 VP-VELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI--DLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGH  262 (612)
T ss_pred             cC-CCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh--ccCCCCceEEEeCCcccccchHHHHHHHhcCCe
Confidence            00 011122334678999999999999999999988776655444  4 5678899999999999998655555555555


Q ss_pred             eEEEcC-cc--CHHHHHHHHH--HcCceeeecchHHHHHHhcCCC----CCccCccccccccEEEecCCCCHhHHHHHHh
Q 039837          254 KVVMMN-RF--ELRAFLDALI--THEVTFAPIVPPIILSLVKDPI----VDEFDLSKLQLRAVMTAAAPLAPDLLSSFEK  324 (544)
Q Consensus       254 ~~~~~~-~~--~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~----~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~  324 (544)
                      ++++.+ .+  ++..+++.++  +++++.+..+|+++..++....    ....++++  +| +++||+++++++.++|.+
T Consensus       263 ~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~--lr-~~~gg~~~~~~~~~~~~~  339 (612)
T PRK12476        263 STLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSN--VV-LIIGSEPVSIDAVTTFNK  339 (612)
T ss_pred             EEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhH--he-EEecccCCCHHHHHHHHH
Confidence            444443 23  7889999995  4899999999999888775321    11223444  45 899999999999999998


Q ss_pred             hc-----CCCeEEecccCccccccccccCCCCCC----------------------CCCCCCCcccccCCCceEEEEeCC
Q 039837          325 KF-----PGVQVQEAYGLTEHSCITLTYGDPANP----------------------SAGSKKNSVGFILPNLEVKFINPE  377 (544)
Q Consensus       325 ~~-----~~~~i~~~yG~tE~~~~~~~~~~~~~~----------------------~~~~~~~~~G~~~~~~~~~i~d~~  377 (544)
                      .|     |...+++.||+||++..++........                      ......+++|+|+++++++|+|++
T Consensus       340 ~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~  419 (612)
T PRK12476        340 AFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPD  419 (612)
T ss_pred             HHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCC
Confidence            87     234699999999987554332110000                      001123578999999999999965


Q ss_pred             CCCcCCCCCCceEEEecccccccccCChhhhhcccC------------------CCCeeecCceEEEcCCCcEEEEeecC
Q 039837          378 TGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTID------------------KNGWLHTGDIGYIDDDGDIFIVDRIK  439 (544)
Q Consensus       378 ~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~------------------~~~~~~TGD~~~~~~~g~~~~~GR~~  439 (544)
                      ++.+++.|+.|||+++|++++.|||++|+.|.+.|.                  .++||+|||+|++ .||+++++||.+
T Consensus       420 ~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~-~dG~l~i~GR~~  498 (612)
T PRK12476        420 TGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-LDGELYITGRIA  498 (612)
T ss_pred             CCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee-ECCEEEEEeccC
Confidence            599999999999999999999999999999988773                  1359999999998 599999999999


Q ss_pred             CceeecceeeChHHHHHHHhc-CCCccc--eEEEeecCCCCCceeEEEEEeCCCCC-CCHHHHHHHHHhccc-CCCc-ee
Q 039837          440 ELIKYKGFQVAPAELEAILLT-HPSVED--AAVVSLPDEEAGEIPAACVVMNPNAK-ESEDDIMDFVASNVA-TYKK-VR  513 (544)
Q Consensus       440 d~i~~~G~~v~~~~iE~~l~~-~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~l~~~l~-~~~~-p~  513 (544)
                      |+||++|++|+|.+||++|.+ ||.|.+  ++|++++++. ++.+++++++.++.. .+.+++.+++++++. .+++ |.
T Consensus       499 d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~  577 (612)
T PRK12476        499 DLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRADPAPAIDAIRAAVSRRHGLAVA  577 (612)
T ss_pred             cEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcccccHHHHHHHHHHHHHHhhCCcce
Confidence            999999999999999999985 799999  6777877766 788899988876543 567888999998887 4777 57


Q ss_pred             EEEEee--cCCCCCCcccchHHHHHHHHH
Q 039837          514 VLHFVD--GIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       514 ~~~~~~--~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      .+++++  +||+|++|||+|++|+++|.+
T Consensus       578 ~v~~v~~~~lP~t~~GKi~r~~L~~~~~~  606 (612)
T PRK12476        578 DVRLVPAGAIPRTTSGKLARRACRAQYLD  606 (612)
T ss_pred             EEEEECCCCcCcCCchHHHHHHHHHHHHc
Confidence            787876  699999999999999999864

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=1e-63  Score=521.36  Aligned_cols=492  Identities=29%  Similarity=0.473  Sum_probs=405.7

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALR-SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~-~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      ..++.+.|.++++.+|+++|+++.  ++.+||+||.+++.++|+.|. +.|+++||+|+++++|+.+++++++||+++|+
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~  101 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSF--GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGL  101 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEEC--CceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCe
Confidence            358999999999999999999975  789999999999999999997 68999999999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC----CCcEEEe-cccc-------------------------
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----GLPIIVL-GEER-------------------------  163 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~-~~~~-------------------------  163 (544)
                      +++|++|.++.+++.+++++++++++++++.....+...    ....+.. +...                         
T Consensus       102 ~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (560)
T PRK08751        102 TVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYR  181 (560)
T ss_pred             EEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhccccccC
Confidence            999999999999999999999999999987665443321    1111111 1000                         


Q ss_pred             cccccCHHHHHHhhhhc-------CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCC--cccC-ccEEEEec
Q 039837          164 IESAINWSELIEAADKA-------GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVP--EMIG-QVTTLGLI  233 (544)
Q Consensus       164 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~--~~~~-~~~~~~~~  233 (544)
                      ......+.+........       .........+||||||.||+|.+||+++...+......+..  .... .++++..+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (560)
T PRK08751        182 INGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITAL  261 (560)
T ss_pred             CCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEec
Confidence            00111222222211100       11122345789999999999999999998877655443311  1223 35778889


Q ss_pred             chhHHHHHHHHHHhhHhccceEEEc-CccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecC
Q 039837          234 PFFHIYGITGICCATLRNKGKVVMM-NRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAA  312 (544)
Q Consensus       234 p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~  312 (544)
                      |++|.+++....+.++..|++.++. +..++..+++.++++++|++.++|.++..+.+.......++++++.  +++||+
T Consensus       262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~--v~~gG~  339 (560)
T PRK08751        262 PLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKM--TLGGGM  339 (560)
T ss_pred             ChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhhee--eeeCCC
Confidence            9999999866566666677766654 4568899999999999999999999999999876555556777777  999999


Q ss_pred             CCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEE
Q 039837          313 PLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCV  392 (544)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v  392 (544)
                      ++++++.++|++.+ ++.+++.||+||++..+.....    ......+++|.|++++.++++| +++.+++.|+.|||++
T Consensus       340 ~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~----~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v  413 (560)
T PRK08751        340 AVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPL----TLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCI  413 (560)
T ss_pred             CCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccc----cccccCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEE
Confidence            99999999999988 8899999999999876554321    1223456799999999999999 6889999999999999


Q ss_pred             ecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEee
Q 039837          393 RSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSL  472 (544)
Q Consensus       393 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~  472 (544)
                      +|+.++.||+++++.+...++.+|||+|||+|+++++|.+++.||.+|+|+++|.+++|.+||++|..+++|.+++|+++
T Consensus       414 ~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~  493 (560)
T PRK08751        414 KGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGV  493 (560)
T ss_pred             ecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEec
Confidence            99999999999999999888788999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 039837          473 PDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK  537 (544)
Q Consensus       473 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~  537 (544)
                      ++...++.++++++.. +...+.+++.++++++++.+++|..++++++||+|.+||++|++|++.
T Consensus       494 ~~~~~ge~~~~~v~~~-~~~~~~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~  557 (560)
T PRK08751        494 PDEKSGEIVKVVIVKK-DPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDA  557 (560)
T ss_pred             CCCCCCceEEEEEEcC-CCCCCHHHHHHHHHHhhhhccCCeEEEEhhhCCCCccccccHHHHHHh
Confidence            9887788777777654 445677899999999999999999999999999999999999999876

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-64  Score=552.10  Aligned_cols=507  Identities=18%  Similarity=0.202  Sum_probs=403.7

Q ss_pred             CCCcceeeccccccCCcceeeecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHH
Q 039837            3 MPNSFSVPVPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRS   82 (544)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~   82 (544)
                      +|+..+..+.+.++.+...+.++...+.  ....|+.+.|.+.++++|+++|+++.  ++.+||+||.++++++|+.|.+
T Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~sl~~ll~~~a~~~pd~~Al~~~--~~~lTY~eL~~ra~rlA~~L~~  491 (994)
T PRK07868        416 AANRSVRTLAVETARTLPRLARLGQIND--HTRISLGRIIAEQARDAPKGEFLLFD--GRVHTYEAVNRRINNVVRGLIA  491 (994)
T ss_pred             HhhhhhHHHHHHHHHhhhhHHHhhhcCC--CCCccHHHHHHHHHHHCCCCeEEEeC--CceeeHHHHHHHHHHHHHHHHH
Confidence            4666777788888888888855554443  66779999999999999999999986  6899999999999999999999


Q ss_pred             cCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEeccc
Q 039837           83 LGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEE  162 (544)
Q Consensus        83 ~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  162 (544)
                      .|+++||+|+++++|+++++++++||+++|++++|++|.   +++.++++.++++++|++++..+.+.....++++++..
T Consensus       492 ~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~~~~iiv~~~~  568 (994)
T PRK07868        492 VGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQLPGRVLVLGGG  568 (994)
T ss_pred             cCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhcCceEEEecCC
Confidence            999999999999999999999999999999999999985   58899999999999999987776665444445544321


Q ss_pred             ccc--------cccCHHHHHHhh---------hhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccC
Q 039837          163 RIE--------SAINWSELIEAA---------DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIG  225 (544)
Q Consensus       163 ~~~--------~~~~~~~~~~~~---------~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~  225 (544)
                      ...        ....+++.....         ..........+.+| +|+|.||++.++|.++..........+  ++..
T Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~--~l~~  645 (994)
T PRK07868        569 ESRDLDLPDDADVIDMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA--ALDR  645 (994)
T ss_pred             ccccccCCcchhhhhhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc--CCCC
Confidence            100        001111110000         00001222345676 577778888888876654444433444  6788


Q ss_pred             ccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccc
Q 039837          226 QVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLR  305 (544)
Q Consensus       226 ~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~  305 (544)
                      ++++++.+|++|.+++...++.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++.......+++++|+ 
T Consensus       646 ~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~-  724 (994)
T PRK07868        646 RDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRL-  724 (994)
T ss_pred             CCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEE-
Confidence            9999999999999998766777888888888888889999999999999999999999999998865433445566665 


Q ss_pred             cEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCc-eEEEE--eC------
Q 039837          306 AVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNL-EVKFI--NP------  376 (544)
Q Consensus       306 ~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~--d~------  376 (544)
                       ++  |+.++++++++|.+.|+++.+++.||+||++..... .      .....+++|+|++++ +++|.  |+      
T Consensus       725 -~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~-~------~~~~~~svG~p~pg~~~v~i~~~d~~~g~li  794 (994)
T PRK07868        725 -FI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN-V------SGAKIGSKGRPLPGAGRVELAAYDPEHDLIL  794 (994)
T ss_pred             -Ee--cCCCCHHHHHHHHHHhCchheeeeeecccccccccc-c------CCCCCcccCCccCCCCceeEEEecCcCCcee
Confidence             65  345999999999999977899999999998754321 1      223567899999998 66654  11      


Q ss_pred             --CCC--CcCCCCCCceEEEecccccccccCChhhh--hcccC-CCCeeecCceEEEcCCCcEEEEeecCCceeecceee
Q 039837          377 --ETG--KSLPSNTPGELCVRSQCVMQGYYNNEEET--ARTID-KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQV  449 (544)
Q Consensus       377 --~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~--~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v  449 (544)
                        ++|  +.++.|+.|||+++++..    + +|+.+  ...|. .+|||+|||+|++|+||+++++||.||+||++|.+|
T Consensus       795 ~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I  869 (994)
T PRK07868        795 EDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPV  869 (994)
T ss_pred             ecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceE
Confidence              345  567889999999998753    3 34332  22342 479999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCccc
Q 039837          450 APAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKI  529 (544)
Q Consensus       450 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi  529 (544)
                      +|.+||++|.+||+|.+++|++++++. ++.+++++++.++...+.++|++++++ ++.|++|..|+++++||+|++||+
T Consensus       870 ~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi  947 (994)
T PRK07868        870 YTEPVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAITAADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRP  947 (994)
T ss_pred             cHHHHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCCCcCCHHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccE
Confidence            999999999999999999999998765 578899999888777888999999986 999999999999999999999999


Q ss_pred             chHHHHHH
Q 039837          530 MRRILKDK  537 (544)
Q Consensus       530 ~r~~l~~~  537 (544)
                      +|++|++.
T Consensus       948 ~r~~L~~~  955 (994)
T PRK07868        948 TVSALRAA  955 (994)
T ss_pred             ehHHHHhc
Confidence            99999865

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=6.3e-64  Score=517.27  Aligned_cols=485  Identities=23%  Similarity=0.314  Sum_probs=406.2

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF  115 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  115 (544)
                      +++.+.|.++|+.+|+++++.+.  ++++||.||.++++++|.+|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~--~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~   79 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYL--GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAY   79 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeC--CcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence            57889999999999999999876  6899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHH-h-----hhhcCCCCCCCCC
Q 039837          116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIE-A-----ADKAGNNFSNDDD  189 (544)
Q Consensus       116 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~  189 (544)
                      +|+++.++.+++.++++..+++++++..+...  .......+..++        +..... .     .............
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~  149 (503)
T PRK04813         80 IPVDVSSPAERIEMIIEVAKPSLIIATEELPL--EILGIPVITLDE--------LKDIFATGNPYDFDHAVKGDDNYYII  149 (503)
T ss_pred             ecCCCCChHHHHHHHHHhcCCCEEEecccccc--cccCCcEEehHH--------hhhhhhccccccccccCCCCCcEEEE
Confidence            99999999999999999999999999876521  111122221110        011000 0     0001112233467


Q ss_pred             CCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc---cCHHHH
Q 039837          190 VKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR---FELRAF  266 (544)
Q Consensus       190 ~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~  266 (544)
                      +||||||.||+|.+||+++.....+....+  .+...++++...|++|..++ ..++.++..|+++++.+.   .++..+
T Consensus       150 ~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~v~~~~~~~~~~~~~  226 (503)
T PRK04813        150 FTSGTTGKPKGVQISHDNLVSFTNWMLEDF--ALPEGPQFLNQAPYSFDLSV-MDLYPTLASGGTLVALPKDMTANFKQL  226 (503)
T ss_pred             ECCCCCCCCcEEEeehHHHHHHHHHHHHHc--CCCcCceeeecCCcchhHhH-HHHHHHHhcCCEEEEcChhhhcCHHHH
Confidence            899999999999999999999888777666  67888999999999999887 567789999999998874   478899


Q ss_pred             HHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccc
Q 039837          267 LDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLT  346 (544)
Q Consensus       267 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~  346 (544)
                      ++.+++++++++..+|+++..++.........+++++.  ++++|+++++.+.+++.+.|+++.+++.||+||++..+..
T Consensus       227 ~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~--i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~  304 (503)
T PRK04813        227 FETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTH--FLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTS  304 (503)
T ss_pred             HHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceE--EEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEE
Confidence            99999999999999999998876654434455677777  9999999999999999999988999999999999865543


Q ss_pred             cCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhccc---CCCCeeecCce
Q 039837          347 YGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI---DKNGWLHTGDI  423 (544)
Q Consensus       347 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~~~~~TGD~  423 (544)
                      ..............++|++.++++++|+| +++.+++.|+.|||+++|+.++.||+++++.+...|   ++.+||+|||+
T Consensus       305 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~  383 (503)
T PRK04813        305 IEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDA  383 (503)
T ss_pred             EEecccccccCCCCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCce
Confidence            32111111234556799999999999999 688999999999999999999999999999888766   33469999999


Q ss_pred             EEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCC----CHHHHH
Q 039837          424 GYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKE----SEDDIM  499 (544)
Q Consensus       424 ~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~  499 (544)
                      |++ .+|++++.||.+|+++++|+++++.+||+.+.++|+|.+++|++.++...++.+++++++.++...    -.+++.
T Consensus       384 ~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  462 (503)
T PRK04813        384 GYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIK  462 (503)
T ss_pred             EEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHHH
Confidence            999 999999999999999999999999999999999999999999998777677888998887654211    114688


Q ss_pred             HHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          500 DFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       500 ~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      ++++++++.+++|..++++++||+|.+||++|++|++++.
T Consensus       463 ~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~  502 (503)
T PRK04813        463 KELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVN  502 (503)
T ss_pred             HHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhc
Confidence            8999999999999999999999999999999999999875

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=2.1e-64  Score=533.68  Aligned_cols=499  Identities=22%  Similarity=0.299  Sum_probs=384.1

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEc----------cCC-----------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEE
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEA----------VSG-----------KAYTYAQVARDTRGFAKALRSLGLRKGQVV   91 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~----------~~~-----------~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V   91 (544)
                      +...|+.++|.++|+.+||++|+...          .++           +.+||+||.++++++|++|.+.|+++||+|
T Consensus        55 ~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~V  134 (696)
T PLN02387         55 EGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERV  134 (696)
T ss_pred             CCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence            44569999999999999999999431          012           238999999999999999999999999999


Q ss_pred             EEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-----C-cEEEeccccc-
Q 039837           92 IVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----L-PIIVLGEERI-  164 (544)
Q Consensus        92 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~-~~~~~~~~~~-  164 (544)
                      +|+++|+++|+++++||+++|+++||+++.++.+++.+++++++++++|++.+....+....     + .++.+++... 
T Consensus       135 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (696)
T PLN02387        135 AIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVD  214 (696)
T ss_pred             EEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCch
Confidence            99999999999999999999999999999999999999999999999999987666554321     2 2333332111 


Q ss_pred             ----------ccccCHHHHHHhhhh-------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCcc
Q 039837          165 ----------ESAINWSELIEAADK-------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQV  227 (544)
Q Consensus       165 ----------~~~~~~~~~~~~~~~-------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~  227 (544)
                                .....+.++......       ........+.|||||||.||||++||+++.+.+......+ ..+..+|
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~-~~~~~~d  293 (696)
T PLN02387        215 SDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVV-PKLGKND  293 (696)
T ss_pred             hhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhc-CCCCCCC
Confidence                      011234444432111       1122334568999999999999999999998887665432 1467889


Q ss_pred             EEEEecchhHHHHHHHHHHhhHhccceEEEcCccC--------HHHHHHHHHHcCceeeecchHHHHHHhcCCCCC----
Q 039837          228 TTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFE--------LRAFLDALITHEVTFAPIVPPIILSLVKDPIVD----  295 (544)
Q Consensus       228 ~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----  295 (544)
                      ++++++|++|.+++.. .+..+..|+++.......        +..+.+.++.+++|++.++|.++..+.+.....    
T Consensus       294 ~~l~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~  372 (696)
T PLN02387        294 VYLAYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAK  372 (696)
T ss_pred             EEEEECcHHHHHHHHH-HHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcc
Confidence            9999999999999854 344566777776644321        133566789999999999999999886421100    


Q ss_pred             ---------------------------cc-----C----------c-cccccccEEEecCCCCHhHHHHHHhhcCCCeEE
Q 039837          296 ---------------------------EF-----D----------L-SKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQ  332 (544)
Q Consensus       296 ---------------------------~~-----~----------~-~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~  332 (544)
                                                 ..     +          + +++|.  +++||+++++++.+.+...+ ++.++
T Consensus       373 ~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~--i~~GGapl~~~~~~~~~~~~-g~~v~  449 (696)
T PLN02387        373 GGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRF--MLSGGAPLSGDTQRFINICL-GAPIG  449 (696)
T ss_pred             cHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEE--EEEcCCCCCHHHHHHHHHHc-CCCee
Confidence                                       00     0          0 34445  99999999999988777777 89999


Q ss_pred             ecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeC-CCCCcC--CCCCCceEEEecccccccccCChhhhh
Q 039837          333 EAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINP-ETGKSL--PSNTPGELCVRSQCVMQGYYNNEEETA  409 (544)
Q Consensus       333 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~--~~g~~Gel~v~~~~~~~gy~~~~~~~~  409 (544)
                      +.||+||++..++...    . .....+++|.|+|+++++|+|. +.+...  .++..|||+|+||+++.|||++|+.|.
T Consensus       450 ~~YG~TEt~~~~~~~~----~-~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~  524 (696)
T PLN02387        450 QGYGLTETCAGATFSE----W-DDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTD  524 (696)
T ss_pred             EeechhhcccceeecC----c-ccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHh
Confidence            9999999986655432    1 2345678999999999999984 333332  234579999999999999999999999


Q ss_pred             ccc--CCCC--eeecCceEEEcCCCcEEEEeecCCceee-cceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEE
Q 039837          410 RTI--DKNG--WLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAAC  484 (544)
Q Consensus       410 ~~~--~~~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  484 (544)
                      +.|  +.+|  ||+|||+|++|+||++++.||.+|+||+ +|++|+|.+||++|.+||.|.+++|++.+..   ..++|+
T Consensus       525 ~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~  601 (696)
T PLN02387        525 EVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFH---SYCVAL  601 (696)
T ss_pred             hhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCc---ceEEEE
Confidence            887  3345  9999999999999999999999999998 6999999999999999999999999986533   467888


Q ss_pred             EEeCCCC--------C---CC----------HHHHHHHH-----HhcccCCCceeEEEEeecC------CCCCCcccchH
Q 039837          485 VVMNPNA--------K---ES----------EDDIMDFV-----ASNVATYKKVRVLHFVDGI------PKSHSGKIMRR  532 (544)
Q Consensus       485 v~~~~~~--------~---~~----------~~~l~~~l-----~~~l~~~~~p~~~~~~~~~------P~t~~GKi~r~  532 (544)
                      +++.+..        .   .+          .+.+.+.+     +.+|+.+.+|+.|.++.+-      -+|++.|++|+
T Consensus       602 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~  681 (696)
T PLN02387        602 VVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKRE  681 (696)
T ss_pred             EEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhH
Confidence            8875421        0   01          01222222     3368999999999888542      36888899999


Q ss_pred             HHHHHHHHhhhC
Q 039837          533 ILKDKMLEKMRK  544 (544)
Q Consensus       533 ~l~~~~~~~~~~  544 (544)
                      .+++.|+++|++
T Consensus       682 ~i~~~y~~~i~~  693 (696)
T PLN02387        682 QIRKKFKDDLKK  693 (696)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999863

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=3e-65  Score=624.85  Aligned_cols=519  Identities=18%  Similarity=0.236  Sum_probs=434.3

Q ss_pred             CCCCcceeeccccccCCcceeee-cCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHH
Q 039837            2 AMPNSFSVPVPLAAAHDEEHIFR-SRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKAL   80 (544)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L   80 (544)
                      ++|+..+.++++..+++..++.. ++.+..+.+...++++.|.+.++++|+++|+++.  +.++||+||.++++++|+.|
T Consensus      3685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~--~~~~tY~eL~~~~~~la~~L 3762 (4334)
T PRK05691       3685 QGFHGDLSELPLLGEQERDFLLDGCNRSERDYPLEQSYVRLFEAQVAAHPQRIAASCL--DQQWSYAELNRAANRLGHAL 3762 (4334)
T ss_pred             hCcCCChhhcCCCCHHHHHHHHHhhCCccCCCccccCHHHHHHHHHHhCCCceEEEcC--CCcccHHHHHHHHHHHHHHH
Confidence            57888999999998888776643 4445555666779999999999999999999987  78899999999999999999


Q ss_pred             HHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-------
Q 039837           81 RSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-------  153 (544)
Q Consensus        81 ~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------  153 (544)
                      .+.|+++|++|+++++++.++++++|||+++|+++||++|.++.+++.++++++++++++++...........       
T Consensus      3763 ~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 3842 (4334)
T PRK05691       3763 RAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCAN 3842 (4334)
T ss_pred             HHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999876543322111       


Q ss_pred             CcEEEe-cccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEe
Q 039837          154 LPIIVL-GEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGL  232 (544)
Q Consensus       154 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~  232 (544)
                      .+.+.+ ++........    ........+...+++.|||||||.||||+++|+++.+.+.+....+  ++.+.++++..
T Consensus      3843 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~--~~~~~~~~~~~ 3916 (4334)
T PRK05691       3843 RPRLLVWEEVQAGEVAS----HNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL--ALSEADVIAQT 3916 (4334)
T ss_pred             ccceeeecccccccccc----cCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc--CCCccceEEEe
Confidence            111111 1110000000    0000111233445789999999999999999999999998888777  88999999999


Q ss_pred             cchhHHHHHHHHHHhhHhccceEEEcCc---cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEE
Q 039837          233 IPFFHIYGITGICCATLRNKGKVVMMNR---FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMT  309 (544)
Q Consensus       233 ~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~  309 (544)
                      .++.+..++ ..++.++..|+++++.+.   .++..+.+.++++++|++.++|+++..++...   ...++++|.  +++
T Consensus      3917 ~s~~fd~s~-~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~--~~~ 3990 (4334)
T PRK05691       3917 ASQSFDISV-WQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALDGLRW--MLP 3990 (4334)
T ss_pred             cCCchhHHH-HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCCCceE--EEe
Confidence            999999887 788999999999999764   47889999999999999999999999987642   223566666  999


Q ss_pred             ecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCce
Q 039837          310 AAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGE  389 (544)
Q Consensus       310 ~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Ge  389 (544)
                      |||++++++.++|.+.+|+++++|.||+||++..++........ ......++|+|+++++++|+| +.++++|.|..||
T Consensus      3991 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GE 4068 (4334)
T PRK05691       3991 TGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAS-TRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGE 4068 (4334)
T ss_pred             cCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEccccc-ccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceE
Confidence            99999999999999998899999999999998766544322111 223446799999999999999 7899999999999


Q ss_pred             EEEecccccccccCChhhhhcccC-------CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCC
Q 039837          390 LCVRSQCVMQGYYNNEEETARTID-------KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHP  462 (544)
Q Consensus       390 l~v~~~~~~~gy~~~~~~~~~~~~-------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~  462 (544)
                      |+|+|+++++||+++|+.|.+.|.       +.+||+|||+|++++||.++++||.|++||++|.+|.+.+||++|+++|
T Consensus      4069 L~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~ 4148 (4334)
T PRK05691       4069 LCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQA 4148 (4334)
T ss_pred             EEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCC
Confidence            999999999999999999998883       3569999999999999999999999999999999999999999999999


Q ss_pred             CccceEEEeecCCCCCceeEEEEEeCCCCCC---CHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 039837          463 SVEDAAVVSLPDEEAGEIPAACVVMNPNAKE---SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK  537 (544)
Q Consensus       463 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~  537 (544)
                      +|.+++|+... ...+..++++++.......   ..++++++++++||.|++|..++++++||+|+||||||++|++.
T Consensus      4149 ~v~~a~v~~~~-~~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4149 EVREAAVAVQE-GVNGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred             CccEEEEEEec-CCCCcEEEEEEeCCcccccchHHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCCC
Confidence            99998887654 3456788999886554322   23678899999999999999999999999999999999999764

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=5.1e-63  Score=513.61  Aligned_cols=491  Identities=27%  Similarity=0.434  Sum_probs=405.1

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      ..++.++|.++++.+|+++|+.+.  ++.+||.||.++++++|.+|.+.|+++||+|+++++|+.+++++++||+++|++
T Consensus        20 ~~~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~   97 (541)
T TIGR03205        20 RGTLPDLLSKAAADYGPRPALEFR--DRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGAR   97 (541)
T ss_pred             CCCHHHHHHHHHHHcCCCceEEEC--CcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeE
Confidence            448999999999999999999885  689999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccch--HHHhhc----CCCc-EEEecccc-------------cccccCHHHHH
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPI--YEKVKG----LGLP-IIVLGEER-------------IESAINWSELI  174 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~--~~~~~~----~~~~-~~~~~~~~-------------~~~~~~~~~~~  174 (544)
                      ++|+++..+.+++.++++.++++++++++..  .....+    .... ++..+...             ......++...
T Consensus        98 ~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (541)
T TIGR03205        98 VVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFV  177 (541)
T ss_pred             EEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHH
Confidence            9999999999999999999999999987531  111111    1111 22222110             01122344443


Q ss_pred             Hhhhh------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccc---cCCcccCccEEEEecchhHHHHHHHHH
Q 039837          175 EAADK------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFS---VVPEMIGQVTTLGLIPFFHIYGITGIC  245 (544)
Q Consensus       175 ~~~~~------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~  245 (544)
                      +....      ..........+||||||.||+|++||+++..........   ........+.++...|++|.+++...+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~  257 (541)
T TIGR03205       178 KGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVIL  257 (541)
T ss_pred             hcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHHHHHH
Confidence            22100      111223346789999999999999999987654422110   001223457889999999999987778


Q ss_pred             HhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhh
Q 039837          246 CATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKK  325 (544)
Q Consensus       246 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~  325 (544)
                      +.++..|+++++....++..+++.++++++|++.++|+++..|++........+++++.  ++.||+++++++.+++.+.
T Consensus       258 ~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~--i~~gg~~~~~~~~~~~~~~  335 (541)
T TIGR03205       258 LRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLAT--IGSGGAPLPVEVANFFERK  335 (541)
T ss_pred             HHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccce--EEEccccCCHHHHHHHHHH
Confidence            88999999999888889999999999999999999999999998765444445667777  9999999999999999887


Q ss_pred             cCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEe-CCCCCcCCCCCCceEEEecccccccccCC
Q 039837          326 FPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFIN-PETGKSLPSNTPGELCVRSQCVMQGYYNN  404 (544)
Q Consensus       326 ~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~g~~Gel~v~~~~~~~gy~~~  404 (544)
                      + +.++++.||+||++..++....    ......+++|.|++++.+++++ .+.+++++.|+.|||+++|++++.||+++
T Consensus       336 ~-~~~~~~~YG~TE~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~  410 (541)
T TIGR03205       336 T-GLKLKSGWGMTETCSPGTGHPP----EGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNR  410 (541)
T ss_pred             h-CCCeecccccccCCcccccCCC----CCCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCC
Confidence            7 7899999999999876654431    1223456899999999998864 26778899999999999999999999999


Q ss_pred             hhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEE
Q 039837          405 EEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAAC  484 (544)
Q Consensus       405 ~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  484 (544)
                      ++.+.+.| .++||+|||+++++++|++++.||.+|+||++|++++|.+||+.++++++|.+++|++++++..++.++++
T Consensus       411 ~~~~~~~~-~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  489 (541)
T TIGR03205       411 PEESAEAF-VGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAF  489 (541)
T ss_pred             hhhhHhhh-ccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEE
Confidence            99998887 57899999999999999999999999999999999999999999999999999999999988778889999


Q ss_pred             EEeCCCCC-CCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHH
Q 039837          485 VVMNPNAK-ESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK  535 (544)
Q Consensus       485 v~~~~~~~-~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~  535 (544)
                      +++.++.. .+.+++.++++++|+.+++|..++++++||+|.+||++|++|+
T Consensus       490 v~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       490 VKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR  541 (541)
T ss_pred             EEECCCCCcCCHHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence            98876543 5778999999999999999999999999999999999999874

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.7e-64  Score=533.35  Aligned_cols=494  Identities=22%  Similarity=0.283  Sum_probs=379.4

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEcc-------------------------CCceeeHHHHHHHHHHHHHHHHHcCCCCCC
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAV-------------------------SGKAYTYAQVARDTRGFAKALRSLGLRKGQ   89 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~-------------------------~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd   89 (544)
                      ..|+.++|.++++++|+++|+.+..                         +.+++||+||.++++++|.+|.+.|+++||
T Consensus        68 ~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd  147 (700)
T PTZ00216         68 GPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGS  147 (700)
T ss_pred             CCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            4589999999999999999998731                         247899999999999999999999999999


Q ss_pred             EEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-------CCcEEEeccc
Q 039837           90 VVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-------GLPIIVLGEE  162 (544)
Q Consensus        90 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-------~~~~~~~~~~  162 (544)
                      +|+|+++|+++|+++++||+++|++++|+++.++.+++.++++++++++++++......+...       ...++.++..
T Consensus       148 ~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~~~  227 (700)
T PTZ00216        148 NVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSL  227 (700)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEECCC
Confidence            999999999999999999999999999999999999999999999999999987655443211       1233333321


Q ss_pred             c------cccccCHHHHHHhhh----------hcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCC---cc
Q 039837          163 R------IESAINWSELIEAAD----------KAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVP---EM  223 (544)
Q Consensus       163 ~------~~~~~~~~~~~~~~~----------~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~---~~  223 (544)
                      .      ......++++.....          .......+.+.+||||||.||||++||+++.+.+......+..   ..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~  307 (700)
T PTZ00216        228 PASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPP  307 (700)
T ss_pred             ccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCC
Confidence            1      011234555543320          0011223456789999999999999999999887766543311   23


Q ss_pred             cCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHH-------HHHHcCceeeecchHHHHHHhcCCCC--
Q 039837          224 IGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLD-------ALITHEVTFAPIVPPIILSLVKDPIV--  294 (544)
Q Consensus       224 ~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~-------~i~~~~~t~~~~~P~~~~~l~~~~~~--  294 (544)
                      ...+++++++|++|.+++.. ....+..|+++.+.   ++..+.+       .++++++|++.++|.++..+.+....  
T Consensus       308 ~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~  383 (700)
T PTZ00216        308 EEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKL  383 (700)
T ss_pred             CCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHH
Confidence            67889999999999998743 45567788877764   3444444       67889999999999999887542100  


Q ss_pred             -----------------------CccC---------------c-cccccccEEEecCCCCHhHHHHHHhhcCCCeEEecc
Q 039837          295 -----------------------DEFD---------------L-SKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAY  335 (544)
Q Consensus       295 -----------------------~~~~---------------~-~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  335 (544)
                                             ....               + ++++.  +++||+++++++.+.+...+ + .+++.|
T Consensus       384 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~--i~~GGa~l~~~~~~~~~~~~-~-~l~~~Y  459 (700)
T PTZ00216        384 PPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRA--MLSGGGPLSAATQEFVNVVF-G-MVIQGW  459 (700)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEE--EEECCCCCCHHHHHHHHHHh-h-hHhhcc
Confidence                                   0000               0 34445  99999999999998877766 6 899999


Q ss_pred             cCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCC-CcCCCCCCceEEEecccccccccCChhhhhcccCC
Q 039837          336 GLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG-KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDK  414 (544)
Q Consensus       336 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~-~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~  414 (544)
                      |+||++..++...     ......+++|+|+++++++|+|.++. ...+++..|||+|+|++++.|||++|+.|.+.|+.
T Consensus       460 G~TEt~~~~~~~~-----~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~  534 (700)
T PTZ00216        460 GLTETVCCGGIQR-----TGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDE  534 (700)
T ss_pred             CcccccccccccC-----CCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccc
Confidence            9999986554332     13345689999999999999995331 23455678999999999999999999999999988


Q ss_pred             CCeeecCceEEEcCCCcEEEEeecCCcee-ecceeeChHHHHHHHhcCCCccce--EEEeecCCCCCceeEEEEEeCCCC
Q 039837          415 NGWLHTGDIGYIDDDGDIFIVDRIKELIK-YKGFQVAPAELEAILLTHPSVEDA--AVVSLPDEEAGEIPAACVVMNPNA  491 (544)
Q Consensus       415 ~~~~~TGD~~~~~~~g~~~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~--~v~~~~~~~~~~~~~~~v~~~~~~  491 (544)
                      +|||+|||+|++++||++++.||.||+|| .+|++|+|.+||+++.++|.|.++  +|+..++.   ..+++++++....
T Consensus       535 dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~---~~l~a~vv~~~~~  611 (700)
T PTZ00216        535 DGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPAR---SYICALVLTDEAK  611 (700)
T ss_pred             cCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCC---ceEEEEEecCHHH
Confidence            99999999999999999999999999999 699999999999999999999973  44443322   5678888764310


Q ss_pred             --------C--CC------HH----HHHHHH-----HhcccCCCceeEEEEee------cCCCCCCcccchHHHHHHHHH
Q 039837          492 --------K--ES------ED----DIMDFV-----ASNVATYKKVRVLHFVD------GIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       492 --------~--~~------~~----~l~~~l-----~~~l~~~~~p~~~~~~~------~~P~t~~GKi~r~~l~~~~~~  540 (544)
                              .  .+      ..    .+.+.+     ++.+..+..++.|+++.      +-.+|+++|++|+++++.|++
T Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~  691 (700)
T PTZ00216        612 AMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYAD  691 (700)
T ss_pred             HHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHH
Confidence                    0  01      11    122222     23577888999888873      345699999999999999999


Q ss_pred             hhhC
Q 039837          541 KMRK  544 (544)
Q Consensus       541 ~~~~  544 (544)
                      +|++
T Consensus       692 ~i~~  695 (700)
T PTZ00216        692 LIKE  695 (700)
T ss_pred             HHHH
Confidence            9863

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.4e-64  Score=616.92  Aligned_cols=517  Identities=20%  Similarity=0.291  Sum_probs=437.8

Q ss_pred             CCCCcceeeccccccCCcceeeecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHH
Q 039837            2 AMPNSFSVPVPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALR   81 (544)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~   81 (544)
                      ++|+..+.++++.++++..++..++.... .+...++.++|.++|+++|+++|+++.  ++++||+||.++++++|++|+
T Consensus      1098 ~~p~~~~~~l~l~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~a~~~p~~~Al~~~--~~~lTY~eL~~~~~~lA~~L~ 1174 (4334)
T PRK05691       1098 EDPQRALGDVQLLDAAERAQLAQWGQAPC-APAQAWLPELLNEQARQTPERIALVWD--GGSLDYAELHAQANRLAHYLR 1174 (4334)
T ss_pred             hCcccchhhhcCCCHHHHHHHHhccCCCC-CCccCCHHHHHHHHHHhCCCCeEEEEC--CceEeHHHHHHHHHHHHHHHH
Confidence            57888999999999888887766654332 234568999999999999999999986  679999999999999999999


Q ss_pred             HcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-CcEEEec
Q 039837           82 SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-LPIIVLG  160 (544)
Q Consensus        82 ~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~  160 (544)
                      +.|+++|++|++++++++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+.... ...+.++
T Consensus      1175 ~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 1254 (4334)
T PRK05691       1175 DKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAIALD 1254 (4334)
T ss_pred             HcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccccCceEEeec
Confidence            999999999999999999999999999999999999999999999999999999999999987665544321 1222222


Q ss_pred             ccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHH
Q 039837          161 EERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYG  240 (544)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  240 (544)
                      ..........    ...........++..+||||||.||||+++|+++.+.+.+....+  ++.++++++...|++|..+
T Consensus      1255 ~~~~~~~~~~----~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~--~~~~~d~~l~~~~~~fd~s 1328 (4334)
T PRK05691       1255 SLHLDSWPSQ----APGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY--ALDDSDVLMQKAPISFDVS 1328 (4334)
T ss_pred             cccccccCCC----CCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc--CCCCCCEEEEeCCccHHHH
Confidence            1111000000    000011123344778999999999999999999999998887777  7889999999999999888


Q ss_pred             HHHHHHhhHhccceEEEcC---ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHh
Q 039837          241 ITGICCATLRNKGKVVMMN---RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPD  317 (544)
Q Consensus       241 ~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~  317 (544)
                      + ..++.++..|+++++.+   ..++..+.+.++++++|++.++|+++..|.+...  ...+++++.  +++|||+++++
T Consensus      1329 ~-~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~--~~~gGe~l~~~ 1403 (4334)
T PRK05691       1329 V-WECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL--AAACTSLRR--LFSGGEALPAE 1403 (4334)
T ss_pred             H-HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc--cccCCcccE--EEEeecCCCHH
Confidence            7 67889999999999975   3578999999999999999999999999986542  234667677  99999999999


Q ss_pred             HHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccc
Q 039837          318 LLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCV  397 (544)
Q Consensus       318 ~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~  397 (544)
                      +.++|.+.+|+++++|.||+||++..++......   ......++|+|++++.++|+| +.+++++.|+.|||+|+|+++
T Consensus      1404 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v 1479 (4334)
T PRK05691       1404 LRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQA---EDGERSPIGRPLGNVLCRVLD-AELNLLPPGVAGELCIGGAGL 1479 (4334)
T ss_pred             HHHHHHHhCCCcEEEeCCCcChheeeeeeeeccc---ccCCCCcccceeCCCEEEEEC-CCCCCCCCCCceEEEecCccc
Confidence            9999999998999999999999987665432111   223456899999999999999 678999999999999999999


Q ss_pred             cccccCChhhhhcccCC-------CCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEE
Q 039837          398 MQGYYNNEEETARTIDK-------NGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV  470 (544)
Q Consensus       398 ~~gy~~~~~~~~~~~~~-------~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  470 (544)
                      ++||+++|+.|.+.|..       .+||+|||+|++++||.++++||.||+||++|++|+|.+||++|.++|+|.+++|+
T Consensus      1480 ~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~ 1559 (4334)
T PRK05691       1480 ARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVL 1559 (4334)
T ss_pred             chhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEE
Confidence            99999999999988732       35999999999999999999999999999999999999999999999999999998


Q ss_pred             eecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 039837          471 SLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK  537 (544)
Q Consensus       471 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~  537 (544)
                      ...+. .+..++++++...+.....++++++++++||.|++|..++++++||+|++||++|++|++.
T Consensus      1560 ~~~~~-~~~~lva~~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691       1560 VREGA-AGAQLVGYYTGEAGQEAEAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred             EeeCC-CCCEEEEEEEeCCCCCCCHHHHHHHHHHhCccccCCcEEEEccccCCCCCCCcChhhcCcc
Confidence            66543 4578899988777666777899999999999999999999999999999999999999754

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-63  Score=507.39  Aligned_cols=458  Identities=25%  Similarity=0.373  Sum_probs=388.4

Q ss_pred             hhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCH
Q 039837           45 DAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHA  124 (544)
Q Consensus        45 ~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~  124 (544)
                      .++..++++|+++.  ++++||+||.++++++|..|+     ++|+|+++++|+++++++++||+++|++++|+++..+.
T Consensus         9 ~~~~~~~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~   81 (471)
T PRK07787          9 VAAAADIADAVRIG--GRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGV   81 (471)
T ss_pred             hhcccCCceEEEeC--CcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCCh
Confidence            34456789999886  789999999999999999996     46999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeecc
Q 039837          125 SELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLT  204 (544)
Q Consensus       125 ~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t  204 (544)
                      +++..+++.+++++++++.+...    ..++........    ..+...    ..........+.+||||||.||||.+|
T Consensus        82 ~~l~~~l~~~~~~~il~~~~~~~----~~~~~~~~~~~~----~~~~~~----~~~~~~~~a~i~~TSGTTG~PK~v~~t  149 (471)
T PRK07787         82 AERRHILADSGAQAWLGPAPDDP----AGLPHVPVRLHA----RSWHRY----PEPDPDAPALIVYTSGTTGPPKGVVLS  149 (471)
T ss_pred             HHHHHHHHhcCCCEEEecCCccc----ccccceeeeccc----cccccC----CCCCCCceEEEEECCCCCCCCCEEEEe
Confidence            99999999999999999764210    011111111000    000000    011223344678999999999999999


Q ss_pred             HHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHH
Q 039837          205 HRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPI  284 (544)
Q Consensus       205 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~  284 (544)
                      |+++...+......+  +...+++++..+|++|.+|+...++.++..|+++++.+..++..+++.++ +++|++.++|++
T Consensus       150 ~~~l~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~  226 (471)
T PRK07787        150 RRAIAADLDALAEAW--QWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTV  226 (471)
T ss_pred             HHHHHHHHHHHHHhc--CCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-hCceEEEcchHH
Confidence            999999887777666  67788999999999999999888999999999999998889999999999 999999999999


Q ss_pred             HHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccc
Q 039837          285 ILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGF  364 (544)
Q Consensus       285 ~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~  364 (544)
                      +..|++.... ...+++++.  ++.||++++++++++|.+.+ +..+++.||+||++.......     ......+++|+
T Consensus       227 ~~~l~~~~~~-~~~l~~l~~--~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~-----~~~~~~~~vG~  297 (471)
T PRK07787        227 WSRIAADPEA-ARALRGARL--LVSGSAALPVPVFDRLAALT-GHRPVERYGMTETLITLSTRA-----DGERRPGWVGL  297 (471)
T ss_pred             HHHHHhCccc-cccccceeE--EEECCCCCCHHHHHHHHHHc-CCCeecccCccccCcceecCC-----CCcccCCcccc
Confidence            9999875432 234566666  99999999999999999988 789999999999986543321     12334568999


Q ss_pred             cCCCceEEEEeCCCCCcCC-CCC-CceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeec-CCc
Q 039837          365 ILPNLEVKFINPETGKSLP-SNT-PGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRI-KEL  441 (544)
Q Consensus       365 ~~~~~~~~i~d~~~~~~~~-~g~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~-~d~  441 (544)
                      |++++.++|+| +++.+++ .|+ .|||+++|+.++.||+++++.+...|..++||+|||+|++++||.+++.||. +|+
T Consensus       298 ~~~g~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~  376 (471)
T PRK07787        298 PLAGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDL  376 (471)
T ss_pred             cCCCcEEEEEC-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCcee
Confidence            99999999999 4577776 344 7999999999999999999999998877899999999999999999999996 889


Q ss_pred             eeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecC
Q 039837          442 IKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGI  521 (544)
Q Consensus       442 i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~  521 (544)
                      ++.+|.+++|.+||++|.+++.|.+++|++.++...++.++++++..  ...+.+++.++++++|+++++|..++++++|
T Consensus       377 i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~--~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~i  454 (471)
T PRK07787        377 IKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGA--DDVAADELIDFVAQQLSVHKRPREVRFVDAL  454 (471)
T ss_pred             EeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeC--CCCCHHHHHHHHHhhcccccCCcEEEEeccC
Confidence            99999999999999999999999999999998888888999998873  3467889999999999999999999999999


Q ss_pred             CCCCCcccchHHHHH
Q 039837          522 PKSHSGKIMRRILKD  536 (544)
Q Consensus       522 P~t~~GKi~r~~l~~  536 (544)
                      |+|.+||++|++|++
T Consensus       455 P~~~~GKi~r~~L~~  469 (471)
T PRK07787        455 PRNAMGKVLKKQLLS  469 (471)
T ss_pred             CCCCCccccHHHhcc
Confidence            999999999999976

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1.1e-62  Score=507.68  Aligned_cols=484  Identities=24%  Similarity=0.382  Sum_probs=403.9

Q ss_pred             HHHHHhh-hhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeec
Q 039837           39 PDFVLQD-AELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSG  117 (544)
Q Consensus        39 ~~~l~~~-a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~  117 (544)
                      .+++.++ ++.+|+++|+++.  ++.+||.||.++++++|++|.+.|+++|++|+++++|+.+++++++||+++|++++|
T Consensus         7 ~~~~~~~~~~~~p~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~   84 (508)
T TIGR02262         7 EDLLDRNVVEGRGGKTAFIDD--ISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVA   84 (508)
T ss_pred             HHHHHHHHhcccCCceEEEeC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEee
Confidence            4455555 6779999999886  689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-----Cc-EEEecccccccccCHHHHHHhhh------hcCCCCC
Q 039837          118 ANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----LP-IIVLGEERIESAINWSELIEAAD------KAGNNFS  185 (544)
Q Consensus       118 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  185 (544)
                      +++.++.+++.++++.+++++++++.+....+.+..     .. .+..+. .......+.+......      .......
T Consensus        85 l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (508)
T TIGR02262        85 LNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGR-PEAGEVQLAELLATESEQFKPAATQADDP  163 (508)
T ss_pred             ccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCC-CCcccccHHHHhhcCCCccCCCCCCCCCc
Confidence            999999999999999999999999987665543321     11 222221 1111122332222111      0112233


Q ss_pred             CCCCCCCCCCcCcceeeccHHHHHHHHHh-hccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcC-ccCH
Q 039837          186 NDDDVKQTDLWISKGVMLTHRNLVANLCS-TLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN-RFEL  263 (544)
Q Consensus       186 ~~~~~tsgttG~PKgV~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~  263 (544)
                      ....+||||||.||||.+||+++...+.. ....+  ++..++.++..+|++|.+++...++.++..|+++++.+ ..++
T Consensus       164 a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  241 (508)
T TIGR02262       164 AFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL--GIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTP  241 (508)
T ss_pred             EEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc--CCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCH
Confidence            45678999999999999999999887765 33334  67888999999999999998777788899999998876 4589


Q ss_pred             HHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcccccc
Q 039837          264 RAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCI  343 (544)
Q Consensus       264 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~  343 (544)
                      ..+++.++++++|++.++|+++..+++..........+++.  ++++|+++++++.+.|.+.| ++++++.||+||++.+
T Consensus       242 ~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~--~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~  318 (508)
T TIGR02262       242 DAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRL--CTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEMLHI  318 (508)
T ss_pred             HHHHHHHHHHCCcEEecchHHHHHHhcCcccccccccccee--EEEcCCCCCHHHHHHHHHHh-CCchhhCccccccCce
Confidence            99999999999999999999999887765433334456666  99999999999999999998 8899999999999876


Q ss_pred             ccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCce
Q 039837          344 TLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDI  423 (544)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~  423 (544)
                      .....     ......+++|.|++++.++++| +++.+++.|+.|||+++|+.++.||+++++.+...| .++||+|||+
T Consensus       319 ~~~~~-----~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~  391 (508)
T TIGR02262       319 FLSNL-----PGDVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDK  391 (508)
T ss_pred             eecCC-----ccCCCCCCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhh-hcCceeccce
Confidence            55332     1223456899999999999999 789999999999999999999999999999998877 6799999999


Q ss_pred             EEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCC---CCHHHHHH
Q 039837          424 GYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK---ESEDDIMD  500 (544)
Q Consensus       424 ~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~  500 (544)
                      ++++++|.+++.||.+|+++++|.++++.+||+.|.++++|.++++++.++...++.+.+++++.++..   ...+++.+
T Consensus       392 ~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~  471 (508)
T TIGR02262       392 YVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKE  471 (508)
T ss_pred             EEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHH
Confidence            999999999999999999999999999999999999999999999999887777778888888766542   34678999


Q ss_pred             HHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 039837          501 FVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK  537 (544)
Q Consensus       501 ~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~  537 (544)
                      .++++|+++++|..+++++++|+|++||++|++|+++
T Consensus       472 ~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~  508 (508)
T TIGR02262       472 HVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLREG  508 (508)
T ss_pred             HHHHhcccCCCCceEEEecCCCCCCCCcEehhhccCC
Confidence            9999999999999999999999999999999998753

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.1e-62  Score=509.95  Aligned_cols=496  Identities=29%  Similarity=0.495  Sum_probs=408.7

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRS-LGLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      ..++.++|..+|+++|+++|+.+.  ++.+||+||.++++++|.+|++ .|+++||+|+++++|++++++++|||+++|+
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~   99 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFINM--GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGM   99 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEEC--CccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence            457999999999999999999986  7899999999999999999984 8999999999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC----CCcEEEecc--cc------------------------
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----GLPIIVLGE--ER------------------------  163 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~~--~~------------------------  163 (544)
                      +++|+++.++.+++.++++.+++++++++.+..+.+.+.    ....+....  ..                        
T Consensus       100 ~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (560)
T PRK08974        100 IVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYH  179 (560)
T ss_pred             EEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhccccccccc
Confidence            999999999999999999999999999987654433221    111111100  00                        


Q ss_pred             cccccCHHHHHHhhhh-------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCC-cccCccEEEEecch
Q 039837          164 IESAINWSELIEAADK-------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVP-EMIGQVTTLGLIPF  235 (544)
Q Consensus       164 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~p~  235 (544)
                      ......+.+.......       ........+.+||||||.||+|.++|+++..++......+.. .....+.++..+|+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~  259 (560)
T PRK08974        180 LPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPL  259 (560)
T ss_pred             CCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcH
Confidence            0001111111111000       112223456789999999999999999998876544332211 23445678889999


Q ss_pred             hHHHHHHHHHHhhHhccceEEEcC-ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCC
Q 039837          236 FHIYGITGICCATLRNKGKVVMMN-RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPL  314 (544)
Q Consensus       236 ~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~  314 (544)
                      +|.+++....+.++..|+++++.. ..++..+++.++++++|.+.++|+++..|++........++++++  +++||+++
T Consensus       260 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~--~~~gg~~~  337 (560)
T PRK08974        260 YHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKL--SVGGGMAV  337 (560)
T ss_pred             HHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeE--EEecCccC
Confidence            999998776777888888877654 567888999999999999999999999998876544555667776  99999999


Q ss_pred             CHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEec
Q 039837          315 APDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRS  394 (544)
Q Consensus       315 ~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~  394 (544)
                      ++.+.++|.+.+ ++.+++.||+||++..+.....    ......+++|.|++++.++++| +++..++.|+.|||+++|
T Consensus       338 ~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g  411 (560)
T PRK08974        338 QQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPY----DLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKG  411 (560)
T ss_pred             CHHHHHHHHHHh-CCcEEeeecccccCceeeccCC----CCcccCCccccCcCCCEEEEEC-CCCCCCCCCCceEEEEec
Confidence            999999999987 8999999999999876655431    1223356899999999999999 578999999999999999


Q ss_pred             ccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecC
Q 039837          395 QCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPD  474 (544)
Q Consensus       395 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  474 (544)
                      +.++.||+++++.+...+ .+|||+|||+++++++|.+++.||.+|+++++|.++++.+||++|.++|+|.+++|++.++
T Consensus       412 ~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~  490 (560)
T PRK08974        412 PQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPS  490 (560)
T ss_pred             CCcchhhcCChhhhhhhh-hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeec
Confidence            999999999999988888 7899999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837          475 EEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM  542 (544)
Q Consensus       475 ~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~  542 (544)
                      ...++.++++++..+ ...+.+++.++++++++.+++|..++++++||+|.+||++|+.|+++..++.
T Consensus       491 ~~~g~~~~~~v~~~~-~~~~~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~~  557 (560)
T PRK08974        491 EVSGEAVKIFVVKKD-PSLTEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAKV  557 (560)
T ss_pred             CCcceEEEEEEECCC-CCCCHHHHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhhh
Confidence            888887777776543 4456788999999999999999999999999999999999999999987764

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=1.4e-62  Score=512.28  Aligned_cols=495  Identities=26%  Similarity=0.394  Sum_probs=398.0

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      .+|....+.+.++.+|+++|+.+.  +.++||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        19 ~~~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v   96 (567)
T PLN02479         19 ALTPLWFLERAAVVHPTRKSVVHG--SVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAV   96 (567)
T ss_pred             ccCHHHHHHHHHhhCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcE
Confidence            357889999999999999999986  678999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC------------CCc-EEEecccc----------cccccCHH
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL------------GLP-IIVLGEER----------IESAINWS  171 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------------~~~-~~~~~~~~----------~~~~~~~~  171 (544)
                      ++|+++.++.+++.++++.++++++++++...+...+.            ..+ ++.+....          ......+.
T Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (567)
T PLN02479         97 VNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYE  176 (567)
T ss_pred             EEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHH
Confidence            99999999999999999999999999988765433211            111 22222110          01222344


Q ss_pred             HHHHhhhhcC-------CCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHH
Q 039837          172 ELIEAADKAG-------NNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGI  244 (544)
Q Consensus       172 ~~~~~~~~~~-------~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~  244 (544)
                      ++........       ........+||||||.||||++||+++..........+  ++..+++++..+|++|.+++...
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~h~~~~~~~  254 (567)
T PLN02479        177 KFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW--GMNEGAVYLWTLPMFHCNGWCFT  254 (567)
T ss_pred             HHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc--CCCCCCEEEEecchhhhhhHHHH
Confidence            4433211110       01123467999999999999999999876665554444  66788999999999999997655


Q ss_pred             HHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCc-cCccccccccEEEecCCCCHhHHHHHH
Q 039837          245 CCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDE-FDLSKLQLRAVMTAAAPLAPDLLSSFE  323 (544)
Q Consensus       245 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~l~~~~v~~~G~~~~~~~~~~~~  323 (544)
                      +...+..|.++++ ..+++..+++.++++++|++.++|+++..|++...... ..+++++.  ++++|+++++.+.++|.
T Consensus       255 ~~~~~~~g~~~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~--~~~~G~~~~~~~~~~~~  331 (567)
T PLN02479        255 WTLAALCGTNICL-RQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVH--VMTAGAAPPPSVLFAMS  331 (567)
T ss_pred             HHHHhhcCceEec-cCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeE--EEEcCCCCCHHHHHHHH
Confidence            5556666666554 56889999999999999999999999999987644322 24566666  99999999999999998


Q ss_pred             hhcCCCeEEecccCccccccccccCCCCC------CCCCCCCCcccccCCCce-EEEEeCCCCCcCCCC--CCceEEEec
Q 039837          324 KKFPGVQVQEAYGLTEHSCITLTYGDPAN------PSAGSKKNSVGFILPNLE-VKFINPETGKSLPSN--TPGELCVRS  394 (544)
Q Consensus       324 ~~~~~~~i~~~yG~tE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~~-~~i~d~~~~~~~~~g--~~Gel~v~~  394 (544)
                      +.  +.++++.||+||+++.+........      ........+.|.+.+++. ++++|++++.+++.+  +.|||+++|
T Consensus       332 ~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g  409 (567)
T PLN02479        332 EK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRG  409 (567)
T ss_pred             hc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEec
Confidence            75  7899999999998654332210000      000111235677888875 788886677888754  679999999


Q ss_pred             ccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecC
Q 039837          395 QCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPD  474 (544)
Q Consensus       395 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  474 (544)
                      +.++.|||++++.+...| .++||+|||+++++++|++++.||.+|+|+++|.+|++.+||++|.++|.|.+++|++.++
T Consensus       410 ~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~  488 (567)
T PLN02479        410 NMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPD  488 (567)
T ss_pred             cchhhhhhcCcccccchh-cCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccc
Confidence            999999999999999888 6899999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCceeEEEEEeCCCCC-----CCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          475 EEAGEIPAACVVMNPNAK-----ESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       475 ~~~~~~~~~~v~~~~~~~-----~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      ...++.+++++++.++..     ...+++.++++++|+.++.|..+++ .+||+|.+||++|+.|++.+.+
T Consensus       489 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gKv~r~~L~~~~~~  558 (567)
T PLN02479        489 ERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAKE  558 (567)
T ss_pred             hhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEe-ccCCCCCccCeeHHHHHHHHHh
Confidence            777888999998776532     3347899999999999999998776 7899999999999999998765

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-62  Score=508.46  Aligned_cols=492  Identities=24%  Similarity=0.288  Sum_probs=403.0

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF  115 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  115 (544)
                      .|+.++|.++|+++|+++|+.+.  ++.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus         3 ~~l~~~~~~~a~~~p~~~a~~~~--~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~   80 (533)
T PRK07798          3 WNIADLFEAVADAVPDRVALVCG--DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVP   80 (533)
T ss_pred             ccHHHHHHHHHHhCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEE
Confidence            58999999999999999999986  7899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-----Cc-EEEecccccc----cccCHHHHHHhhhhc-----
Q 039837          116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----LP-IIVLGEERIE----SAINWSELIEAADKA-----  180 (544)
Q Consensus       116 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~-~~~~~~~~~~----~~~~~~~~~~~~~~~-----  180 (544)
                      +++++.++.+++.++++++++++++++......+.+..     .. ++.++.....    ....+++........     
T Consensus        81 v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (533)
T PRK07798         81 VNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPERDFGE  160 (533)
T ss_pred             EecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCCcCCCCC
Confidence            99999999999999999999999999887665554321     11 2233322111    122455544331111     


Q ss_pred             CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccC-------Ccc------cCccEEEEecchhHHHHHHHHHHh
Q 039837          181 GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV-------PEM------IGQVTTLGLIPFFHIYGITGICCA  247 (544)
Q Consensus       181 ~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~-------~~~------~~~~~~~~~~p~~~~~g~~~~~~~  247 (544)
                      .......+.+||||||.||+|++||+++..........+.       ...      ..+++++..+|++|..++ ..++.
T Consensus       161 ~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~-~~~~~  239 (533)
T PRK07798        161 RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQ-WAAFA  239 (533)
T ss_pred             CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhH-HHHHH
Confidence            0111235788999999999999999998765543221110       011      466889999999999998 47889


Q ss_pred             hHhccceEEEcC--ccCHHHHHHHHHHcCceeeecchHHHHH-HhcCCC-CCccCccccccccEEEecCCCCHhHHHHHH
Q 039837          248 TLRNKGKVVMMN--RFELRAFLDALITHEVTFAPIVPPIILS-LVKDPI-VDEFDLSKLQLRAVMTAAAPLAPDLLSSFE  323 (544)
Q Consensus       248 ~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~-l~~~~~-~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~  323 (544)
                      ++..|+++++.+  .+++..+++.++++++|.+.++|..+.. +.+... .....+++++.  +++||+++++++.++|.
T Consensus       240 ~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~--i~~gG~~~~~~~~~~~~  317 (533)
T PRK07798        240 ALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFA--IASGGALFSPSVKEALL  317 (533)
T ss_pred             HHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEE--EEECCCCCCHHHHHHHH
Confidence            999999999998  7889999999999999999999865533 333222 22344566666  99999999999999999


Q ss_pred             hhcCCCeEEecccCccccccccccCCCCCCCCCCCCCccc--ccCCCceEEEEeCCCCCcCCCCCC--ceEEEecccccc
Q 039837          324 KKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVG--FILPNLEVKFINPETGKSLPSNTP--GELCVRSQCVMQ  399 (544)
Q Consensus       324 ~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~i~d~~~~~~~~~g~~--Gel~v~~~~~~~  399 (544)
                      +.++++.+++.||+||++.+......       ......|  .+.++..++++| +++.+++.|+.  |+++ .++.++.
T Consensus       318 ~~~~~~~~~~~YG~tE~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~  388 (533)
T PRK07798        318 ELLPNVVLTDSIGSSETGFGGSGTVA-------KGAVHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPL  388 (533)
T ss_pred             HHcCCCeEEeeecccccccccccCCC-------CCCccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccc
Confidence            99988999999999999765543321       1111233  788999999999 57778999887  6665 4567999


Q ss_pred             cccCChhhhhcccC---CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCC
Q 039837          400 GYYNNEEETARTID---KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEE  476 (544)
Q Consensus       400 gy~~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~  476 (544)
                      ||+++++.+...|.   +.+||+|||+++++++|++++.||.+|+++.+|.+|++.+||++|.++|+|.+++|++.++..
T Consensus       389 gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~  468 (533)
T PRK07798        389 GYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDER  468 (533)
T ss_pred             cccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcc
Confidence            99999999887763   346999999999999999999999999999999999999999999999999999999998887


Q ss_pred             CCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          477 AGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       477 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      .++.+.+++++.++...+.+++.++++++|+.+++|..+++++++|+|.+||++|+.|+++..++
T Consensus       469 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~~~~~  533 (533)
T PRK07798        469 WGQEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWAKEQAAER  533 (533)
T ss_pred             cCceEEEEEEECCCCCCCHHHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHHHHhhhhccC
Confidence            78889999988877667889999999999999999999999999999999999999999988653

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=6.4e-63  Score=519.32  Aligned_cols=499  Identities=23%  Similarity=0.252  Sum_probs=385.7

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEcc--CC-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHH
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEAV--SG-----KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA  105 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~--~~-----~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~  105 (544)
                      +...|+.++|.+.++++|+++|+....  .+     ..+||+|+.++++++|.+|.+.|+++||+|+|+++|+++|++++
T Consensus        39 ~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~  118 (660)
T PLN02430         39 SDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAM  118 (660)
T ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            456699999999999999999986431  11     34799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHH-HhhcC-----CCc-EEEeccccc----------cccc
Q 039837          106 LGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYE-KVKGL-----GLP-IIVLGEERI----------ESAI  168 (544)
Q Consensus       106 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-~~~~~-----~~~-~~~~~~~~~----------~~~~  168 (544)
                      +||+++|+++||+++.++.+++.++++.++++++|++..... .+...     .++ ++.++....          ....
T Consensus       119 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~  198 (660)
T PLN02430        119 EACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTY  198 (660)
T ss_pred             HHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEE
Confidence            999999999999999999999999999999999999875432 22111     122 223322110          0123


Q ss_pred             CHHHHHHhhhh-------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccc---cCCcccCccEEEEecchhHH
Q 039837          169 NWSELIEAADK-------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFS---VVPEMIGQVTTLGLIPFFHI  238 (544)
Q Consensus       169 ~~~~~~~~~~~-------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~  238 (544)
                      .++++......       ..+.....+.+||||||.||||++||+++...+......   +...+...+++++++|++|.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~  278 (660)
T PLN02430        199 SWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHI  278 (660)
T ss_pred             EHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHH
Confidence            45555433211       112233456889999999999999999998877654321   11245788999999999999


Q ss_pred             HHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCC------------------------
Q 039837          239 YGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIV------------------------  294 (544)
Q Consensus       239 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------  294 (544)
                      ++... .+.++..|+++++... ++..+.+.+++.++|++.++|.++..+.+....                        
T Consensus       279 ~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
T PLN02430        279 LDRMI-EEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWM  356 (660)
T ss_pred             HHHHH-HHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            99855 4557889999887643 678899999999999999999999877642100                        


Q ss_pred             -------Ccc---C----------c-cccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCC
Q 039837          295 -------DEF---D----------L-SKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANP  353 (544)
Q Consensus       295 -------~~~---~----------~-~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~  353 (544)
                             ...   +          + ++++.  +++||+++++++.+.++ .+.++.+++.||+||+++.++...    .
T Consensus       357 ~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~--~~~gga~l~~~~~~~~~-~~~~~~i~~~YG~TE~~~~~~~~~----~  429 (660)
T PLN02430        357 NRGYSHKKASPMADFLAFRKVKAKLGGRLRL--LISGGAPLSTEIEEFLR-VTSCAFVVQGYGLTETLGPTTLGF----P  429 (660)
T ss_pred             hcCCCCCCcchhHHHHHHHHHHHHhCCeEEE--EEECCCCCCHHHHHHHH-HhcCCCeeeecchhhhhhceEeec----c
Confidence                   000   0          0 34455  99999999999865554 453578999999999987655432    1


Q ss_pred             CCCCCCCcccccCCCceEEEEe-CCCC-CcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCc
Q 039837          354 SAGSKKNSVGFILPNLEVKFIN-PETG-KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGD  431 (544)
Q Consensus       354 ~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  431 (544)
                      ......+++|.|.++++++++| ++.+ .+++.+..|||+|+|++++.|||++|+.|...| .+|||+|||+|++++||+
T Consensus       430 ~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw~~TGDig~~d~dG~  508 (660)
T PLN02430        430 DEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPNGV  508 (660)
T ss_pred             ccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-hccceeccceEEECCCCc
Confidence            1233468999999999999987 3333 455666789999999999999999999999888 689999999999999999


Q ss_pred             EEEEeecCCceee-cceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCC----------CCC------
Q 039837          432 IFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA----------KES------  494 (544)
Q Consensus       432 ~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~~~------  494 (544)
                      +++.||.+|+||+ +|++|+|.+||++|.++|.|.+++|++..   .+..++|++++.+..          ..+      
T Consensus       509 l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~  585 (660)
T PLN02430        509 LKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCS  585 (660)
T ss_pred             EEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhc
Confidence            9999999999997 79999999999999999999999999842   346789999876421          001      


Q ss_pred             HHHHH----HHH-----HhcccCCCceeEEEEeec------CCCCCCcccchHHHHHHHHHhhhC
Q 039837          495 EDDIM----DFV-----ASNVATYKKVRVLHFVDG------IPKSHSGKIMRRILKDKMLEKMRK  544 (544)
Q Consensus       495 ~~~l~----~~l-----~~~l~~~~~p~~~~~~~~------~P~t~~GKi~r~~l~~~~~~~~~~  544 (544)
                      ..+++    +.+     ++.|+.+.++..|++.++      =.+|+++|++|+.+.+.|+++|++
T Consensus       586 ~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~  650 (660)
T PLN02430        586 LPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDE  650 (660)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHH
Confidence            11122    222     235899999998888742      258999999999999999998863

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=3.2e-63  Score=500.08  Aligned_cols=431  Identities=21%  Similarity=0.277  Sum_probs=357.0

Q ss_pred             eeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEe
Q 039837           63 AYTYAQVARDTRGFAKALRSLGL-RKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVS  141 (544)
Q Consensus        63 ~~Ty~el~~~~~~la~~L~~~Gi-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~  141 (544)
                      -+.|+||.++++++|++|++.|+ ++|++|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~   98 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG   98 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence            37899999999999999999988 57999999999999999999999999999999999999999999999999999998


Q ss_pred             ccchHHHhhcCCCcEEEecccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCC
Q 039837          142 YAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVP  221 (544)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~  221 (544)
                      +.+.....         .. ..     ...    . ............+||||||.||||++||+++...+......+  
T Consensus        99 ~~~~~~~~---------~~-~~-----~~~----~-~~~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~~--  156 (452)
T PRK07445         99 LDQLKLSH---------PP-PL-----PSQ----G-ILPNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRYF--  156 (452)
T ss_pred             cCcccccc---------CC-CC-----Ccc----c-cCCCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHHHh--
Confidence            76532110         00 00     000    0 011122334567899999999999999999988887766555  


Q ss_pred             cccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccc
Q 039837          222 EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSK  301 (544)
Q Consensus       222 ~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  301 (544)
                      +... +..++.+|++|.+|+ ..++.++..|+++++.+.............++++++.++|+++..+++..   ...+++
T Consensus       157 ~~~~-~~~~~~~Pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~---~~~l~~  231 (452)
T PRK07445        157 QLQQ-VNSFCVLPLYHVSGL-MQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQLR---PQWLAQ  231 (452)
T ss_pred             cCCC-CceEeccCchhhhhH-HHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhhC---hhhhhc
Confidence            4443 357889999999998 56778999999999887432222233345688999999999999998632   234566


Q ss_pred             cccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCc
Q 039837          302 LQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKS  381 (544)
Q Consensus       302 l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~  381 (544)
                      ++.  +++||+++++++.+++.+ + ++++++.||+||++..+.... +  ........++|+|+++++++|+       
T Consensus       232 l~~--i~~gG~~l~~~~~~~~~~-~-~~~l~~~YG~TE~~~~~~~~~-~--~~~~~~~~~~G~~~p~~~v~i~-------  297 (452)
T PRK07445        232 FRT--ILLGGAPAWPSLLEQARQ-L-QLRLAPTYGMTETASQIATLK-P--DDFLAGNNSSGQVLPHAQITIP-------  297 (452)
T ss_pred             ceE--EEECCccCCHHHHHHHHh-c-CCeEecCcchhhhcccccccC-c--hhhccCCCcCCccCCCCeEEEc-------
Confidence            666  999999999999998876 4 889999999999986544322 0  0012245679999999999997       


Q ss_pred             CCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcC
Q 039837          382 LPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTH  461 (544)
Q Consensus       382 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~  461 (544)
                        .|+.|||+++|+.++.||++++.      ..++||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.+|
T Consensus       298 --~g~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~  369 (452)
T PRK07445        298 --ANQTGNITIQAQSLALGYYPQIL------DSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILAT  369 (452)
T ss_pred             --CCCcceEEEeCCccchhhcCCcc------CCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhC
Confidence              36779999999999999998542      2578999999999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          462 PSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       462 ~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      |+|.+++|++.+++..|+.++++++..++ ..+.++++++++++|+.+++|..++++++||+|++||++|++|++++.++
T Consensus       370 p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  448 (452)
T PRK07445        370 GLVQDVCVLGLPDPHWGEVVTAIYVPKDP-SISLEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQR  448 (452)
T ss_pred             CCcceEEEEeccCcCCCcEEEEEEEeCCC-CCCHHHHHHHHHHhCCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHh
Confidence            99999999999998888999999987655 45678999999999999999999999999999999999999999999998


Q ss_pred             hh
Q 039837          542 MR  543 (544)
Q Consensus       542 ~~  543 (544)
                      |+
T Consensus       449 ~~  450 (452)
T PRK07445        449 LG  450 (452)
T ss_pred             hC
Confidence            85

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.7e-62  Score=501.91  Aligned_cols=485  Identities=24%  Similarity=0.385  Sum_probs=397.3

Q ss_pred             HhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCC
Q 039837           43 LQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTA  122 (544)
Q Consensus        43 ~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~  122 (544)
                      ..+|+++|+++|+++..+++.+||.||.+++.++|++|.+.|+++|++|+++++|+++++++++||+++|++++++++.+
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~   83 (511)
T PRK13391          4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHL   83 (511)
T ss_pred             hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecccccc
Confidence            46788899999998755578899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCceEEEeccchHHHhhcCC-----C-cEEEecc-cccccccCHHHHHHhhhhc---CCCCCCCCCCCC
Q 039837          123 HASELKKQVDAADAKLIVSYAPIYEKVKGLG-----L-PIIVLGE-ERIESAINWSELIEAADKA---GNNFSNDDDVKQ  192 (544)
Q Consensus       123 ~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~-~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ts  192 (544)
                      +.+++.++++.++++.++++......+.+..     . ..+.++. ........+.+........   .........+||
T Consensus        84 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TS  163 (511)
T PRK13391         84 TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAGLPATPIADESLGTDMLYSS  163 (511)
T ss_pred             CHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcCCCCCCCCCcccccEEEECC
Confidence            9999999999999999999877655443221     1 1122221 1111122223222111100   111223568999


Q ss_pred             CCCcCcceeec--cHHHHHHH---HHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHH
Q 039837          193 TDLWISKGVML--THRNLVAN---LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFL  267 (544)
Q Consensus       193 gttG~PKgV~~--t~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~  267 (544)
                      ||||.||||++  +|.++...   .......+  .+...++++..+|++|.+++ ...+.++..|+++++.+.+++..++
T Consensus       164 GtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~p~~h~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~  240 (511)
T PRK13391        164 GTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW--GFRSDMVYLSPAPLYHSAPQ-RAVMLVIRLGGTVIVMEHFDAEQYL  240 (511)
T ss_pred             CCCCCCCEEEEccccchhhhhhHHHHHHHHhc--CCCCCCeEEEcCCHHHHHHH-HHHHHHHHcCceEEECCCCCHHHHH
Confidence            99999999995  46655322   22233333  56788899999999999887 4567788999999999888999999


Q ss_pred             HHHHHcCceeeecchHHHHHHhcCCCC--CccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcccccccc
Q 039837          268 DALITHEVTFAPIVPPIILSLVKDPIV--DEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITL  345 (544)
Q Consensus       268 ~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~  345 (544)
                      +.++++++|++.++|+++..+++....  ...++++++.  +++||+++++++.+++.+.+ +..+++.||+||++.+..
T Consensus       241 ~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~--~~~gg~~~~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~  317 (511)
T PRK13391        241 ALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEV--AIHAAAPCPPQVKEQMIDWW-GPIIHEYYAATEGLGFTA  317 (511)
T ss_pred             HHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeE--EEEccCCCCHHHHHHHHHHc-CCceeeeeccccccceEE
Confidence            999999999999999999988765431  2334666666  99999999999999999988 788999999999987654


Q ss_pred             ccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCC-CeeecCceE
Q 039837          346 TYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKN-GWLHTGDIG  424 (544)
Q Consensus       346 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~-~~~~TGD~~  424 (544)
                      ...    .......+++|+|+++ .++++| +++.+++.|+.|||+++|+ ++.||+++++.+...+..+ +||+|||+|
T Consensus       318 ~~~----~~~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g  390 (511)
T PRK13391        318 CDS----EEWLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIG  390 (511)
T ss_pred             ecC----ccccccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEE
Confidence            322    1122345789999999 689999 6889999999999999999 8899999999998877554 999999999


Q ss_pred             EEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCC---CCHHHHHHH
Q 039837          425 YIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK---ESEDDIMDF  501 (544)
Q Consensus       425 ~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~  501 (544)
                      +++++|.+++.||.+|++|++|.++++.+||++|.++|.|.+++|++.+++..++.+++++++.++..   ...+++.++
T Consensus       391 ~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  470 (511)
T PRK13391        391 YVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAF  470 (511)
T ss_pred             EECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888888899888765432   234789999


Q ss_pred             HHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          502 VASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       502 l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      ++++++.+++|..+++++++|+|++||++|+.|++.|..
T Consensus       471 ~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~  509 (511)
T PRK13391        471 CRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWG  509 (511)
T ss_pred             HHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence            999999999999999999999999999999999998864

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=2.6e-63  Score=495.14  Aligned_cols=485  Identities=27%  Similarity=0.373  Sum_probs=379.7

Q ss_pred             CCCCCCHHHHHHhhhhhcCCceEEEEccCC--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHH
Q 039837           32 VPENVTLPDFVLQDAELYADKVAFVEAVSG--KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIM  109 (544)
Q Consensus        32 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~  109 (544)
                      .....++..++.++++.+|+.+++.....+  ..+||+|+.+++.++|.+|+..|+..||+|+|++.|+++|+++.+||+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~   91 (613)
T COG1022          12 VAEIHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAIL   91 (613)
T ss_pred             hhhcccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence            345568999999999999999898865433  689999999999999999999999779999999999999999999999


Q ss_pred             HhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhc-CCC--c-EEE----ec---cc-----------ccccc
Q 039837          110 AAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKG-LGL--P-IIV----LG---EE-----------RIESA  167 (544)
Q Consensus       110 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~-~~~--~-~~~----~~---~~-----------~~~~~  167 (544)
                      .+|++.||+.++.++++++++|+.++++++|++......... ...  + +..    .+   ..           ...+.
T Consensus        92 ~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (613)
T COG1022          92 ALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGI  171 (613)
T ss_pred             HcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccc
Confidence            999999999999999999999999999999998754433222 111  0 000    00   00           00001


Q ss_pred             cCHHHHHHhh-----hhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHH
Q 039837          168 INWSELIEAA-----DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGIT  242 (544)
Q Consensus       168 ~~~~~~~~~~-----~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~  242 (544)
                      ..+ ......     ........+.+.+||||||.||||++||+|+++++......+. ....+|+.++++|+.|++..+
T Consensus       172 ~~~-~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~-~~~~~d~~LsfLPlaHi~Er~  249 (613)
T COG1022         172 SLF-LIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLP-PIGPGDRVLSFLPLAHIFERA  249 (613)
T ss_pred             hhh-hhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCC-CCCCCcEEEEeCcHHHHHHHH
Confidence            111 000000     0122333446789999999999999999999999999988873 378999999999999999986


Q ss_pred             HHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCC--------CC--------------------
Q 039837          243 GICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDP--------IV--------------------  294 (544)
Q Consensus       243 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------~~--------------------  294 (544)
                      +.....+..|.++..  ..++..+++.++..+||.++++|..|+.+.+..        ..                    
T Consensus       250 ~~~~~~~~~g~~~~~--~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~  327 (613)
T COG1022         250 FEGGLALYGGVTVLF--KEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRAL  327 (613)
T ss_pred             HHHHHHhhcceEEEe--cCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhh
Confidence            555555555555554  347999999999999999999999987763210        00                    


Q ss_pred             -C------------------ccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCC
Q 039837          295 -D------------------EFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSA  355 (544)
Q Consensus       295 -~------------------~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~  355 (544)
                       .                  ...+. =+++.+++||+++++++...++..  ++++.++||+||++..++..+     ..
T Consensus       328 ~~~~~~~~~~~~d~LVf~Kir~~lG-gri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~~-----~~  399 (613)
T COG1022         328 LGGGPLSWLLVADRLVFRKIRDALG-GRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVNP-----PD  399 (613)
T ss_pred             cccCCcchhhhhhHHHHHHHHHHhC-CcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEcc-----cc
Confidence             0                  00011 135559999999999999999887  899999999999998888763     37


Q ss_pred             CCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEE
Q 039837          356 GSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIV  435 (544)
Q Consensus       356 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~  435 (544)
                      ....+++|+|+|+++++|+|.           |||+|+||.+|.|||++|+.|.+.|+.||||+|||+|.++++|++++.
T Consensus       400 ~~~~gtvG~p~p~~evKI~d~-----------GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~  468 (613)
T COG1022         400 RFVLGTVGKPLPGIEVKIADD-----------GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVIT  468 (613)
T ss_pred             CcccCCcCCcCCCceEEEccC-----------ceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEe
Confidence            788899999999999999983           999999999999999999999999999999999999999999999999


Q ss_pred             eecCCceee-cceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCC------------CCH------H
Q 039837          436 DRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK------------ESE------D  496 (544)
Q Consensus       436 GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~------------~~~------~  496 (544)
                      ||++|+||. +|++|.|..||..+.++|.|.+++|++ .++   ..+.|++++..+.-            .+.      .
T Consensus       469 gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k---~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~  544 (613)
T COG1022         469 GRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDK---KFLVALIVPDFDALEKWAESLNKVISASREELARDP  544 (613)
T ss_pred             ecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCC---cceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCH
Confidence            999999998 899999999999999999999999998 333   46888888765310            111      1


Q ss_pred             HHHHHH-------HhcccCCCceeEEEEe-e-----cCCCCCCcccchHHHHHHHHHhhh
Q 039837          497 DIMDFV-------ASNVATYKKVRVLHFV-D-----GIPKSHSGKIMRRILKDKMLEKMR  543 (544)
Q Consensus       497 ~l~~~l-------~~~l~~~~~p~~~~~~-~-----~~P~t~~GKi~r~~l~~~~~~~~~  543 (544)
                      ++++..       ...+..+..+..+... .     .--.|++-|++|..+.+.|+++++
T Consensus       545 ~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~  604 (613)
T COG1022         545 KLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIE  604 (613)
T ss_pred             HHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHH
Confidence            222221       1123444555555554 2     234589999999999999988775

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.3e-62  Score=502.76  Aligned_cols=472  Identities=27%  Similarity=0.426  Sum_probs=393.3

Q ss_pred             CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEE
Q 039837           60 SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLI  139 (544)
Q Consensus        60 ~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  139 (544)
                      .++.+||.||.+.+.++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++
T Consensus         8 ~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~i   87 (502)
T PRK08276          8 SGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVL   87 (502)
T ss_pred             CCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEE
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccchHHHhhcC------CCcEEEecccccccccCHHHHHHhhhh---cCCCCCCCCCCCCCCCcCcceeeccHHHHHH
Q 039837          140 VSYAPIYEKVKGL------GLPIIVLGEERIESAINWSELIEAADK---AGNNFSNDDDVKQTDLWISKGVMLTHRNLVA  210 (544)
Q Consensus       140 i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~  210 (544)
                      ++++.....+...      ....+.+.+........++........   ..........+||||||.||+|+++|.++..
T Consensus        88 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~~~~~~~~  167 (502)
T PRK08276         88 IVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDP  167 (502)
T ss_pred             EEccchhhHHHHHhhhccccccEEEEeCCCCCccccHHHHHhcCCCCCCCCCCcceEEEECCCCCCCCceEEEccCCcch
Confidence            9988766654332      233333332222222334433322111   1112234678999999999999998877543


Q ss_pred             HH------HhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHH
Q 039837          211 NL------CSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPI  284 (544)
Q Consensus       211 ~~------~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~  284 (544)
                      ..      .......  .....++++...|++|..++.. .+.++..|+++++.+.+++..+++.++++++|++.++|++
T Consensus       168 ~~~~~~~~~~~~~~~--~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~  244 (502)
T PRK08276        168 DEAPGMMLALLGFGM--YGGPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTM  244 (502)
T ss_pred             hhhhHHhhhhhhhcc--cCCCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcCCCCHHHHHHHHHHhCCeEEEehHHH
Confidence            22      1111111  2346788999999999998744 4578999999999988899999999999999999999999


Q ss_pred             HHHHhcCCCC--CccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcc
Q 039837          285 ILSLVKDPIV--DEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSV  362 (544)
Q Consensus       285 ~~~l~~~~~~--~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~  362 (544)
                      +..+++....  ...++++++.  ++++|++++.++++++.+.+ +..+++.||+||++.+++...    .......+++
T Consensus       245 ~~~l~~~~~~~~~~~~~~~lr~--i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~----~~~~~~~~~~  317 (502)
T PRK08276        245 FVRMLKLPEEVRARYDVSSLRV--AIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITS----EDWLAHPGSV  317 (502)
T ss_pred             HHHHHhCccccCCCCCcccceE--EEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecC----ccccccCCCc
Confidence            9999876542  2345677777  99999999999999999988 788999999999987555432    1122345689


Q ss_pred             cccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCce
Q 039837          363 GFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELI  442 (544)
Q Consensus       363 G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i  442 (544)
                      |+|+ ++.++++| +++.+++.|+.|||+++|+.++.||+++++.+...+..++||+|||+++++++|.+++.||.+|++
T Consensus       318 G~~~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i  395 (502)
T PRK08276        318 GKAV-LGEVRILD-EDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMI  395 (502)
T ss_pred             ceec-ccEEEEEC-CCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceE
Confidence            9999 88999999 578899999999999999999999999999999888777999999999999999999999999999


Q ss_pred             eecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcccCCCceeEEEEee
Q 039837          443 KYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE---DDIMDFVASNVATYKKVRVLHFVD  519 (544)
Q Consensus       443 ~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~~~  519 (544)
                      +++|.++++.+||.+|.++|+|.++++++..++..++.+++++++.++...+.   +.+.+.++++++.+++|..+++++
T Consensus       396 ~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~  475 (502)
T PRK08276        396 ISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFED  475 (502)
T ss_pred             EeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCcEEEEec
Confidence            99999999999999999999999999999998888899999999876544333   478999999999999999999999


Q ss_pred             cCCCCCCcccchHHHHHHHHHhhh
Q 039837          520 GIPKSHSGKIMRRILKDKMLEKMR  543 (544)
Q Consensus       520 ~~P~t~~GKi~r~~l~~~~~~~~~  543 (544)
                      ++|+|++||++|++|++.|.++-+
T Consensus       476 ~lP~t~~GKi~r~~L~~~~~~~~~  499 (502)
T PRK08276        476 ELPRTPTGKLYKRRLRDRYWEGRQ  499 (502)
T ss_pred             CCCCCcccchhHHHHHHHHHhhhh
Confidence            999999999999999999887654

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.4e-63  Score=518.63  Aligned_cols=493  Identities=19%  Similarity=0.235  Sum_probs=380.7

Q ss_pred             CCCCCCCHHHHHHhhhhhcCCceEEEEccC--C--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHH
Q 039837           31 PVPENVTLPDFVLQDAELYADKVAFVEAVS--G--KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVAL  106 (544)
Q Consensus        31 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~--~--~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~l  106 (544)
                      +.....|+.+.|+++|+++|+++|+++...  +  +.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus        44 ~~~~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l  123 (624)
T PRK12582         44 LGPYPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTL  123 (624)
T ss_pred             CCCcccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHH
Confidence            344567899999999999999999986421  1  689999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCeeecCCCCCCH-----HHHHHHHHhcCceEEEeccch-H-HHh---hcCCCcEEEecccc-cccccCHHHHHH
Q 039837          107 GIMAAGGVFSGANPTAHA-----SELKKQVDAADAKLIVSYAPI-Y-EKV---KGLGLPIIVLGEER-IESAINWSELIE  175 (544)
Q Consensus       107 A~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~ii~~~~~-~-~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~  175 (544)
                      ||+++|++++|+++.++.     +++.++++.++++++|++... . ..+   .......+.++... ......+.++..
T Consensus       124 A~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  203 (624)
T PRK12582        124 AAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAFADLAA  203 (624)
T ss_pred             HHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCceEEEEcCCCcccccccHHHHhh
Confidence            999999999999999874     899999999999999997642 1 111   11123344433211 111223333332


Q ss_pred             hhh---------hcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCccc---CccEEEEecchhHHHHHHH
Q 039837          176 AAD---------KAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMI---GQVTTLGLIPFFHIYGITG  243 (544)
Q Consensus       176 ~~~---------~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~g~~~  243 (544)
                      ...         .........+.+||||||.||||++||+++.+.........  ...   ..++++.++|++|.+|+..
T Consensus       204 ~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~~~~~~l~~lPl~h~~g~~~  281 (624)
T PRK12582        204 TPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLR--PREPDPPPPVSLDWMPWNHTMGGNA  281 (624)
T ss_pred             cCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhc--cccCCCCCceEEEechHHHHHhHHH
Confidence            110         01122334578999999999999999999988776554333  222   2578999999999999877


Q ss_pred             HHHhhHhccceEEEcCc-cCH---HHHHHHHHHcCceeeecchHHHHHHhcCCCCC----ccCccccccccEEEecCCCC
Q 039837          244 ICCATLRNKGKVVMMNR-FEL---RAFLDALITHEVTFAPIVPPIILSLVKDPIVD----EFDLSKLQLRAVMTAAAPLA  315 (544)
Q Consensus       244 ~~~~~l~~G~~~~~~~~-~~~---~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~~~~~~l~~~~v~~~G~~~~  315 (544)
                      .++.++..|+++++.+. +.+   ..+++.++++++|+++++|+++..|++.....    ...++++|.  +++||++++
T Consensus       282 ~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~--i~~gGa~l~  359 (624)
T PRK12582        282 NFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRL--MAYGGATLS  359 (624)
T ss_pred             HHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeE--EEecCCCCC
Confidence            77889999999998753 333   45677788999999999999999887532211    123566666  999999999


Q ss_pred             HhHHHHHHhhc-----CCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceE
Q 039837          316 PDLLSSFEKKF-----PGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGEL  390 (544)
Q Consensus       316 ~~~~~~~~~~~-----~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel  390 (544)
                      +++.++|.+.+     +++.+++.||+||++.++....    . .....+++|+|++|+++++++        .|+.|||
T Consensus       360 ~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~----~-~~~~~~svG~p~pg~~v~i~~--------~G~~GEl  426 (624)
T PRK12582        360 DDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTH----W-DTERVGLIGLPLPGVELKLAP--------VGDKYEV  426 (624)
T ss_pred             HHHHHHHHHHHHhhcCCCceEEeccccccccceeeccc----C-CCCCCCCCCcCCCCcEEEEcc--------CCCceEE
Confidence            99999998863     1468999999999987654321    1 224567899999999999964        3778999


Q ss_pred             EEecccccccccCChhhhhcccCCCCeeecCceEEE-c---CCCcEEEEeecCCceee-cceeeChHHHH--HHHhcCCC
Q 039837          391 CVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYI-D---DDGDIFIVDRIKELIKY-KGFQVAPAELE--AILLTHPS  463 (544)
Q Consensus       391 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~-~---~~g~~~~~GR~~d~i~~-~G~~v~~~~iE--~~l~~~~~  463 (544)
                      +++|++++.|||++|+.|.+.|+.+|||+|||+|++ |   ++|++++.||.+|+|++ +|++|+|.+||  .++.+||.
T Consensus       427 ~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~  506 (624)
T PRK12582        427 RVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPV  506 (624)
T ss_pred             EEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcc
Confidence            999999999999999999999988999999999998 4   46999999999999996 89999999885  68899999


Q ss_pred             ccceEEEeecCCCCCceeEEEEEeCC----------CC----CCCHHHHHHHHHhcccCC-------C-ceeEEEEeecC
Q 039837          464 VEDAAVVSLPDEEAGEIPAACVVMNP----------NA----KESEDDIMDFVASNVATY-------K-KVRVLHFVDGI  521 (544)
Q Consensus       464 v~~~~v~~~~~~~~~~~~~~~v~~~~----------~~----~~~~~~l~~~l~~~l~~~-------~-~p~~~~~~~~~  521 (544)
                      |.+++|++++++..+    +++++..          +.    ..+.+++.++++..|..+       . +|..+++++++
T Consensus       507 V~~a~VvG~~~~~~g----~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  582 (624)
T PRK12582        507 IHDAVVAGQDRAFIG----LLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEP  582 (624)
T ss_pred             hheEEEEcCCCCcEE----EEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCCC
Confidence            999999998766433    3433221          10    013355666665555444       4 99999999776


Q ss_pred             C------CCCCcccchHHHHHHHHHhhhC
Q 039837          522 P------KSHSGKIMRRILKDKMLEKMRK  544 (544)
Q Consensus       522 P------~t~~GKi~r~~l~~~~~~~~~~  544 (544)
                      |      +|++||++|+.+.+.|+++|++
T Consensus       583 ~~~~~g~~t~~~~~~R~~~~~~y~~~i~~  611 (624)
T PRK12582        583 PSIDAGEITDKGYINQRAVLERRAALVER  611 (624)
T ss_pred             CCccCCcCCccccccHHHHHHHHHHHHHH
Confidence            5      4678889999999999999863

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.7e-62  Score=499.21  Aligned_cols=454  Identities=21%  Similarity=0.292  Sum_probs=380.5

Q ss_pred             CHHHHH-HhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837           37 TLPDFV-LQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF  115 (544)
Q Consensus        37 ~l~~~l-~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  115 (544)
                      ++.+.+ ..+|+++|+++|+.+.  ++.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus         3 ~~~~~~~~~~a~~~~~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~   80 (458)
T PRK09029          3 IFSDWPWRHWAQVRPQAIALRLN--DEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARV   80 (458)
T ss_pred             hhhcChHHHHHHhCCCceeeecC--CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEE
Confidence            444444 4668999999999875  7899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCC
Q 039837          116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDL  195 (544)
Q Consensus       116 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgtt  195 (544)
                      +|+++..+.+++..+++.+++++++++++... +...  ........  ..        ...............+|||||
T Consensus        81 v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~--~~~~~~~~--~~--------~~~~~~~~~~~a~i~~TSGTT  147 (458)
T PRK09029         81 LPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSAL--TSLHLQLV--EG--------AHAVAWQPQRLATMTLTSGST  147 (458)
T ss_pred             eecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhhc--cccccccc--cc--------cCcccCCCCCeEEEEECCCCC
Confidence            99999999999999999999999998766432 1110  00000000  00        000011122234678999999


Q ss_pred             cCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCc
Q 039837          196 WISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEV  275 (544)
Q Consensus       196 G~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~  275 (544)
                      |.||||.+||+++...+......+  +...+++++..+|++|.+|+ ..++.++..|+++++.+.   ..+.+.+  .++
T Consensus       148 G~PKgv~~s~~~~~~~~~~~~~~~--~~~~~~~~l~~~p~~h~~g~-~~~~~~l~~G~~v~~~~~---~~~~~~i--~~~  219 (458)
T PRK09029        148 GLPKAAVHTAQAHLASAEGVLSLM--PFTAQDSWLLSLPLFHVSGQ-GIVWRWLYAGATLVVRDK---QPLEQAL--AGC  219 (458)
T ss_pred             CCCCEEEEeHHHHHHHHHHHhhcC--CCCccceEEEecCcHhhhhh-HHHHHHHhCCceEEeCCh---HHHHHHH--hhc
Confidence            999999999999999988877766  67888999999999999997 466778999999998774   4566666  378


Q ss_pred             eeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCC
Q 039837          276 TFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSA  355 (544)
Q Consensus       276 t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~  355 (544)
                      |.+..+|+++..|+.....    ..+++.  +++||+++++.+.+.+.+.  ++++++.||+||++...+...       
T Consensus       220 t~~~~~P~~~~~l~~~~~~----~~~l~~--i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~-------  284 (458)
T PRK09029        220 THASLVPTQLWRLLDNRSE----PLSLKA--VLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCAKR-------  284 (458)
T ss_pred             eeeecChHHHHHHHhcccc----CCcceE--EEECCCCCCHHHHHHHHHc--CCcEeccccccccCcceeccC-------
Confidence            9999999999999876432    234555  9999999999999998864  899999999999986554322       


Q ss_pred             CCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEE
Q 039837          356 GSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIV  435 (544)
Q Consensus       356 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~  435 (544)
                      .....++|+|++++.+++++            |||+++|+.++.||+++++.+.... .++||+|||+|+++ +|.+++.
T Consensus       285 ~~~~~~~G~~~~~~~~~i~~------------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~~~  350 (458)
T PRK09029        285 ADGLAGVGSPLPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELTIL  350 (458)
T ss_pred             CCCCCCCCCCCCCCEEEEeC------------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-CCEEEEe
Confidence            12234699999999999986            8999999999999999888775443 67999999999998 9999999


Q ss_pred             eecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEE
Q 039837          436 DRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVL  515 (544)
Q Consensus       436 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~  515 (544)
                      ||++|+||++|.+|+|.+||++|+++|+|.+++|++.+++..++.++++++...  ..+.+++.++++++|+.|++|..+
T Consensus       351 gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~~~~~~l~~~~~~~l~~~~~P~~~  428 (458)
T PRK09029        351 GRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS--EAAVVNLAEWLQDKLARFQQPVAY  428 (458)
T ss_pred             cccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc--ccCHHHHHHHHHhhchhccCCeEE
Confidence            999999999999999999999999999999999999999888899999988653  457789999999999999999999


Q ss_pred             EEeecCCCCCCcccchHHHHHHHHHhhhC
Q 039837          516 HFVDGIPKSHSGKIMRRILKDKMLEKMRK  544 (544)
Q Consensus       516 ~~~~~~P~t~~GKi~r~~l~~~~~~~~~~  544 (544)
                      ++++++|+|.+||++|+.|++++.+..++
T Consensus       429 ~~~~~~p~t~~gKi~r~~L~~~~~~~~~~  457 (458)
T PRK09029        429 YLLPPELKNGGIKISRQALKEWVAQQLGN  457 (458)
T ss_pred             EEecccccCcCCCcCHHHHHHHHHhccCC
Confidence            99999999999999999999999887654

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7e-61  Score=498.59  Aligned_cols=495  Identities=25%  Similarity=0.386  Sum_probs=398.0

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      +++..+.|++.++.+|+++|+.+.  +..+||+||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~a~~~~--~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~   94 (545)
T PRK08162         17 PLTPLSFLERAAEVYPDRPAVIHG--DRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAV   94 (545)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEEC--CeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcE
Confidence            468889999999999999999886  689999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC----C-CcEEEeccccc-------ccccCHHHHHHhhhhc--
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----G-LPIIVLGEERI-------ESAINWSELIEAADKA--  180 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--  180 (544)
                      ++|++++++.+++..+++.++++.++++.+....+.+.    . ...+.++....       .....++.+.......  
T Consensus        95 ~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (545)
T PRK08162         95 LNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDPDFA  174 (545)
T ss_pred             EeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCCcccc
Confidence            99999999999999999999999999998876655431    1 11222221110       1122344333221110  


Q ss_pred             -----CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceE
Q 039837          181 -----GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV  255 (544)
Q Consensus       181 -----~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~  255 (544)
                           .........+||||||.||||+++|+++...+......+  .+..+++++..+|++|..++...++..+. |++.
T Consensus       175 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~--~~~~~~~~l~~~pl~h~~~~~~~~~~~~~-~g~~  251 (545)
T PRK08162        175 WTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW--GMPKHPVYLWTLPMFHCNGWCFPWTVAAR-AGTN  251 (545)
T ss_pred             ccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc--CCCCCCeeEeccCcHhhhhHHHHHHHHHH-ccEE
Confidence                 001123467899999999999999998876665554444  56778899999999999988655555554 4455


Q ss_pred             EEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecc
Q 039837          256 VMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAY  335 (544)
Q Consensus       256 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  335 (544)
                      ++...+++..+++.++++++|++.++|+++..|++........+...+.  ++++|+.+++++.+.+.+.  ++++++.|
T Consensus       252 ~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~--~~~~~~~Y  327 (545)
T PRK08162        252 VCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVH--AMVAGAAPPAAVIAKMEEI--GFDLTHVY  327 (545)
T ss_pred             EEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceE--EEECCCCCCHHHHHHHHHh--CCceeecc
Confidence            5556689999999999999999999999999998765433333444334  7899999999999998874  89999999


Q ss_pred             cCccccccccccCCCCCC------CCCCCCCcccccCCC-ceEEEEeCCCCCcCCC-C-CCceEEEecccccccccCChh
Q 039837          336 GLTEHSCITLTYGDPANP------SAGSKKNSVGFILPN-LEVKFINPETGKSLPS-N-TPGELCVRSQCVMQGYYNNEE  406 (544)
Q Consensus       336 G~tE~~~~~~~~~~~~~~------~~~~~~~~~G~~~~~-~~~~i~d~~~~~~~~~-g-~~Gel~v~~~~~~~gy~~~~~  406 (544)
                      |+||++..+..+......      .......+.|.+.+. ..++++|++++.+++. | +.|||+++|+.++.||+++++
T Consensus       328 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~  407 (545)
T PRK08162        328 GLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPK  407 (545)
T ss_pred             cccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChh
Confidence            999986544432211000      001122445655543 3578888777888876 3 469999999999999999999


Q ss_pred             hhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEE
Q 039837          407 ETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV  486 (544)
Q Consensus       407 ~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~  486 (544)
                      .+...| .++||+|||+|+++++|.+++.||.+|++|++|.+++|.+||+.|.++|+|.+++|++.+++..++.++++++
T Consensus       408 ~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~  486 (545)
T PRK08162        408 ATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVE  486 (545)
T ss_pred             hhHHHh-hCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEE
Confidence            999888 6789999999999999999999999999999999999999999999999999999999988877888999999


Q ss_pred             eCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          487 MNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       487 ~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      +.++...+.+++.+++++.|+.+++|..+++ .+||+|.+||++|+.|++++.+
T Consensus       487 ~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~~  539 (545)
T PRK08162        487 LKDGASATEEEIIAHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKS  539 (545)
T ss_pred             eCCCCCCCHHHHHHHHHHhcccccCCcEEEe-cccCCCCCcCCcHHHHHHHHhh
Confidence            8877667889999999999999999998865 6899999999999999998754

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.7e-61  Score=495.61  Aligned_cols=473  Identities=25%  Similarity=0.385  Sum_probs=391.0

Q ss_pred             EEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHh
Q 039837           54 AFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDA  133 (544)
Q Consensus        54 a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~  133 (544)
                      |+++.  ++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++++++.++.+++.++++.
T Consensus         4 ~~~~~--~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~   81 (509)
T PRK12406          4 TIISG--DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILED   81 (509)
T ss_pred             EEEEC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhc
Confidence            45554  6899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEeccchHHHhhcCC---CcEEEeccc---------------ccccccCHHHHHHhhh---hcCCCCCCCCCCCC
Q 039837          134 ADAKLIVSYAPIYEKVKGLG---LPIIVLGEE---------------RIESAINWSELIEAAD---KAGNNFSNDDDVKQ  192 (544)
Q Consensus       134 ~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~---------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ts  192 (544)
                      +++++++++......+.+..   ...+.....               .......+++......   ...........+||
T Consensus        82 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS  161 (509)
T PRK12406         82 SGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEPYDGPPVPQPQSMIYTS  161 (509)
T ss_pred             cCCcEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccCccCCCCCCCceEEEECC
Confidence            99999999877666543221   112111100               0111223333322111   11223344678999


Q ss_pred             CCCcCcceeeccHHHHH---HHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHH
Q 039837          193 TDLWISKGVMLTHRNLV---ANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDA  269 (544)
Q Consensus       193 gttG~PKgV~~t~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~  269 (544)
                      ||||.||+|.++|.+..   .........+  ++..+++++..+|++|..+... .+.++..|+++++.+..++..+++.
T Consensus       162 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~  238 (509)
T PRK12406        162 GTTGHPKGVRRAAPTPEQAAAAEQMRALIY--GLKPGIRALLTGPLYHSAPNAY-GLRAGRLGGVLVLQPRFDPEELLQL  238 (509)
T ss_pred             CCCCCCceEEEechhHHHHHHHHHhhhhhc--CCCCCceEEEEeCCcccchHHH-HHHHHhhheEEEEccCCCHHHHHHH
Confidence            99999999998766543   3333333344  6678899999999999887644 4456788999999888899999999


Q ss_pred             HHHcCceeeecchHHHHHHhcCCC--CCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcccccccccc
Q 039837          270 LITHEVTFAPIVPPIILSLVKDPI--VDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTY  347 (544)
Q Consensus       270 i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~  347 (544)
                      ++++++|++.++|+++..|++...  ....++++++.  +++||+++++++++++.+.+ ++.+++.||+||++.+++..
T Consensus       239 l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~--v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~  315 (509)
T PRK12406        239 IERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRH--VIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTESGAVTFAT  315 (509)
T ss_pred             HHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeE--EEEcCCCCCHHHHHHHHHHc-CCcEEeeccccccCceEecC
Confidence            999999999999999999987543  23345677766  99999999999999999988 78899999999999765533


Q ss_pred             CCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccc-cccCChhhhhcccCCCCeeecCceEEE
Q 039837          348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQ-GYYNNEEETARTIDKNGWLHTGDIGYI  426 (544)
Q Consensus       348 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~-gy~~~~~~~~~~~~~~~~~~TGD~~~~  426 (544)
                      .    .......+++|.|++++.++++| +++++++.|+.|||+++|+.++. +|+++++.+...+ .++||+|||++++
T Consensus       316 ~----~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~  389 (509)
T PRK12406        316 S----EDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RGGFITSGDVGYL  389 (509)
T ss_pred             c----ccccccCCCcCccCCCcEEEEEC-CCCCCCCCCCceEEEEECCccccccccCCchhccccc-CCCCeEEccEEEE
Confidence            2    11223457899999999999999 57899999999999999998875 8999988887665 7899999999999


Q ss_pred             cCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcc
Q 039837          427 DDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNV  506 (544)
Q Consensus       427 ~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l  506 (544)
                      +++|.+++.||.+|++|++|.+|++.+||+.|+++++|.++++++.++...++.+++++++.++...+.+++.+.+++.+
T Consensus       390 ~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l  469 (509)
T PRK12406        390 DADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKARL  469 (509)
T ss_pred             cCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCCCHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999998887788899999887766668899999999999


Q ss_pred             cCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          507 ATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       507 ~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      +++++|..+++++++|+|.+||++|++|++.+.+
T Consensus       470 ~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~  503 (509)
T PRK12406        470 AGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWA  503 (509)
T ss_pred             ccCCCCcEEEEeccCCCCCccchhHHHHHHHHHh
Confidence            9999999999999999999999999999998864

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=4.1e-61  Score=540.56  Aligned_cols=485  Identities=23%  Similarity=0.302  Sum_probs=397.6

Q ss_pred             CCCHHHHHHhhhhhcCC-ceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           35 NVTLPDFVLQDAELYAD-KVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      ..++.+.+.+.++++|+ +.++.+. +++++||+||.++++++|+.|++ |+++||+|+++++|+++++++++||+++|+
T Consensus       630 ~~~~~~~l~~~~~~~~~~~~ai~~~-~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~  707 (1140)
T PRK06814        630 DRTLFEALIEAAKIHGFKKLAVEDP-VNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGR  707 (1140)
T ss_pred             cCCHHHHHHHHHHHcCCCCeEeECC-CCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCC
Confidence            45788899999999874 5666553 36789999999999999999975 999999999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHh------hcC--CCcEEEecccccccccCHHHHHH---hhh----
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKV------KGL--GLPIIVLGEERIESAINWSELIE---AAD----  178 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~----  178 (544)
                      +++++++..+.+++.++++++++++++++++..+..      .+.  ...++.+++.. .....++....   ...    
T Consensus       708 v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~  786 (1140)
T PRK06814        708 VPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVR-AQIGLADKIKGLLAGRFPLVY  786 (1140)
T ss_pred             EEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhh-ccCChHHHHHHHhhccCCccc
Confidence            999999999999999999999999999987654322      111  12333333211 11111111111   000    


Q ss_pred             --hcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEE
Q 039837          179 --KAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVV  256 (544)
Q Consensus       179 --~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~  256 (544)
                        ...........+||||||.||||.+||+++.+........+  +...+|++++.+|++|.+++...++.++..|++++
T Consensus       787 ~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~--~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~  864 (1140)
T PRK06814        787 FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI--DFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVF  864 (1140)
T ss_pred             cCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh--CCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEE
Confidence              01223334568899999999999999999998888777766  77889999999999999998778889999999999


Q ss_pred             EcCc-cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecc
Q 039837          257 MMNR-FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAY  335 (544)
Q Consensus       257 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  335 (544)
                      +.+. .+...+.+.++++++|++.++|+++..+.+..  ...+++++|.  +++||+++++++.+.+.+.+ ++++++.|
T Consensus       865 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~--v~~gg~~l~~~~~~~~~~~~-~~~~~~~Y  939 (1140)
T PRK06814        865 LYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRY--VFAGAEKVKEETRQTWMEKF-GIRILEGY  939 (1140)
T ss_pred             EecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeE--EEEcCCcCCHHHHHHHHHHh-CCcEEecc
Confidence            8763 56778889999999999999999999987753  2345677777  99999999999999999988 89999999


Q ss_pred             cCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCC
Q 039837          336 GLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKN  415 (544)
Q Consensus       336 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~  415 (544)
                      |+||++..+....    + .....+++|+|++++++++.+. .+    .|+.|||+++|+.++.||+++++........+
T Consensus       940 G~TE~~~~~~~~~----~-~~~~~~~vG~p~~g~~~~~~~~-~~----~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~ 1009 (1140)
T PRK06814        940 GVTETAPVIALNT----P-MHNKAGTVGRLLPGIEYRLEPV-PG----IDEGGRLFVRGPNVMLGYLRAENPGVLEPPAD 1009 (1140)
T ss_pred             ccccccceEEecC----C-CCCCCCcCCccCCCCeEEEeec-CC----CCCceEEEEeCCCcchhhcCCCCCCccccCCC
Confidence            9999987655432    1 2345678999999999999873 32    36789999999999999998765432222358


Q ss_pred             CeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 039837          416 GWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE  495 (544)
Q Consensus       416 ~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  495 (544)
                      |||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.+++.+.+++|++++++..|+.+++++.   +.+.+.
T Consensus      1010 g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~---~~~~~~ 1086 (1140)
T PRK06814       1010 GWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT---ASDATR 1086 (1140)
T ss_pred             CeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc---CCCcCH
Confidence            99999999999999999999999999999999999999999999999999999999998888888776653   344567


Q ss_pred             HHHHHHHHhc-ccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837          496 DDIMDFVASN-VATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM  542 (544)
Q Consensus       496 ~~l~~~l~~~-l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~  542 (544)
                      +++.+++++. ++++++|..+++++++|+|++||++|++|++++.+..
T Consensus      1087 ~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 1134 (1140)
T PRK06814       1087 AAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAA 1134 (1140)
T ss_pred             HHHHHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhh
Confidence            8899999875 9999999999999999999999999999999887654

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.9e-61  Score=504.60  Aligned_cols=493  Identities=24%  Similarity=0.383  Sum_probs=375.3

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEcc-------CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHH
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAV-------SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGI  108 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~-------~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~  108 (544)
                      +++.+.|+++|..+|+++|+++..       ..+++||+||.+++.++|++|.+.| ++||+|+++++|++++++++|||
T Consensus         1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~   79 (578)
T PRK05850          1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA   79 (578)
T ss_pred             CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence            478899999999999999998632       1268999999999999999999999 68999999999999999999999


Q ss_pred             HHhcCeeecCCC---CCCHHHHHHHHHhcCceEEEeccchHHHhhcC-------CC-cEEEecccccccccCHHHHHHhh
Q 039837          109 MAAGGVFSGANP---TAHASELKKQVDAADAKLIVSYAPIYEKVKGL-------GL-PIIVLGEERIESAINWSELIEAA  177 (544)
Q Consensus       109 ~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~  177 (544)
                      +++|++++|+++   ..+.+++.++++.+++++++++++..+.+...       .. .++.++.........     ...
T Consensus        80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  154 (578)
T PRK05850         80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLDLDSPRG-----SDA  154 (578)
T ss_pred             HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeecccccccCCc-----ccc
Confidence            999999999997   45788999999999999999998776665431       11 112111100000000     000


Q ss_pred             hhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhcccc-CC---cccCccEEEEecchhHHHHHHHHHHhhHhccc
Q 039837          178 DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSV-VP---EMIGQVTTLGLIPFFHIYGITGICCATLRNKG  253 (544)
Q Consensus       178 ~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~  253 (544)
                      ............+||||||.||||++||+++.+.+......+ ..   .....+++++++|++|.+|+...++.+++.|+
T Consensus       155 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~  234 (578)
T PRK05850        155 RPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGC  234 (578)
T ss_pred             CCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCC
Confidence            111223344678999999999999999999988765543321 10   13557899999999999998888999999999


Q ss_pred             eEEEcCcc----CHHHHHHHHHHcCceeeecchHHHH-HHhcCC---CCCccCccccccccEEEecCCCCHhHHHHHHhh
Q 039837          254 KVVMMNRF----ELRAFLDALITHEVTFAPIVPPIIL-SLVKDP---IVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKK  325 (544)
Q Consensus       254 ~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~-~l~~~~---~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~  325 (544)
                      ++++.++.    ++..+++.+.++++++. .+|.++. .+....   .....++++++.  ++.||+++++++.++|.+.
T Consensus       235 ~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~--~~~gg~~~~~~~~~~~~~~  311 (578)
T PRK05850        235 PAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLG--IISGSERVHPATLKRFADR  311 (578)
T ss_pred             cEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhhee--EEECcCCCCHHHHHHHHHH
Confidence            99998742    68899999999999866 4565543 333211   112334566666  9999999999999999987


Q ss_pred             cC-----CCeEEecccCccccccccccCCCCCCC---------C-----------CCCCCcccccCCCceEEEEeCCCCC
Q 039837          326 FP-----GVQVQEAYGLTEHSCITLTYGDPANPS---------A-----------GSKKNSVGFILPNLEVKFINPETGK  380 (544)
Q Consensus       326 ~~-----~~~i~~~yG~tE~~~~~~~~~~~~~~~---------~-----------~~~~~~~G~~~~~~~~~i~d~~~~~  380 (544)
                      |+     +..+++.||+||++..+..........         .           .....++|.|. +.+++++|++++.
T Consensus       312 ~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~  390 (578)
T PRK05850        312 FAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCI  390 (578)
T ss_pred             HHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCc
Confidence            72     357999999999875443321000000         0           00112345554 5789999977788


Q ss_pred             cCCCCCCceEEEecccccccccCChhhhhcccC-----------CCCeeecCceEEEcCCCcEEEEeecCCceeecceee
Q 039837          381 SLPSNTPGELCVRSQCVMQGYYNNEEETARTID-----------KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQV  449 (544)
Q Consensus       381 ~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v  449 (544)
                      +++.|+.|||+++|+.++.|||++++.+.+.|.           .++||+|||+|+++ +|++++.||.+|+||++|++|
T Consensus       391 ~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i  469 (578)
T PRK05850        391 ECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNH  469 (578)
T ss_pred             CCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEECCeec
Confidence            999999999999999999999999999998874           25799999999997 999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH------HHHHHHHHhcccC--CCceeEEEEe--e
Q 039837          450 APAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE------DDIMDFVASNVAT--YKKVRVLHFV--D  519 (544)
Q Consensus       450 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~l~~~l~~--~~~p~~~~~~--~  519 (544)
                      +|.+||++|.+||.+ +++++++++. .++.+++++++.++...+.      ..+.+.+.+.++.  ...|..++++  +
T Consensus       470 ~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~~  547 (578)
T PRK05850        470 YPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLVLVAPG  547 (578)
T ss_pred             CHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCCCceEEEEeCCC
Confidence            999999999999985 5778888876 6788999998876544332      3455555555543  2346556666  4


Q ss_pred             cCCCCCCcccchHHHHHHHHHh
Q 039837          520 GIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       520 ~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      .||+|.+||++|++|+++|.+.
T Consensus       548 ~iP~t~~GKi~R~~l~~~~~~~  569 (578)
T PRK05850        548 SIPITTSGKIRRAACVEQYRQD  569 (578)
T ss_pred             CcCCCCCchHHHHHHHHHHHcC
Confidence            8999999999999999998653

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-61  Score=506.45  Aligned_cols=496  Identities=22%  Similarity=0.312  Sum_probs=394.1

Q ss_pred             CCCCCCCCCCHHHHHHhhhhhcCCceEEEEccC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHH
Q 039837           28 PAVPVPENVTLPDFVLQDAELYADKVAFVEAVS--GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA  105 (544)
Q Consensus        28 ~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~  105 (544)
                      -+++.+...|+.++|+..++.+|+..++ +...  .+.+||.||..++.++|++|++.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~   91 (579)
T PRK09192         13 LPRRYADFPTLVEALDYAALGEAGMNFY-DRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAF   91 (579)
T ss_pred             ccccccchhhHHHHHHHhhccCCceEEE-ecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHH
Confidence            3455677789999999999999866654 4322  267999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCeeecCCCCCC-------HHHHHHHHHhcCceEEEeccchHHHhhcCC--CcEEEecccccccccCHHHHHHh
Q 039837          106 LGIMAAGGVFSGANPTAH-------ASELKKQVDAADAKLIVSYAPIYEKVKGLG--LPIIVLGEERIESAINWSELIEA  176 (544)
Q Consensus       106 lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  176 (544)
                      +||+++|++++|+++..+       .+++.++++.++++++++++.....+....  .....+        ..+..+...
T Consensus        92 lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  163 (579)
T PRK09192         92 FACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHV--------LSHAWFKAL  163 (579)
T ss_pred             HHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccccce--------eehhhhccc
Confidence            999999999999987543       589999999999999999987665554321  111100        011111000


Q ss_pred             h------hhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhcc-ccCCcccCccEEEEecchhHHHHHHHHHHhhH
Q 039837          177 A------DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLF-SVVPEMIGQVTTLGLIPFFHIYGITGICCATL  249 (544)
Q Consensus       177 ~------~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l  249 (544)
                      .      ..........+.+||||||.||||.+||+++...+..... .+  +...+++++.++|++|.+|+...++.++
T Consensus       164 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~d~~l~~~p~~h~~g~~~~~~~~l  241 (579)
T PRK09192        164 PEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL--KVRPGDRCVSWLPFYHDMGLVGFLLTPV  241 (579)
T ss_pred             CCCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc--cCCCCCeEEEeCCCCCcchhHHHHHHHH
Confidence            0      0111122345688999999999999999999988877665 55  7788999999999999999877788889


Q ss_pred             hccceEEEcCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCC---CCccCccccccccEEEecCCCCHhHHHHH
Q 039837          250 RNKGKVVMMNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPI---VDEFDLSKLQLRAVMTAAAPLAPDLLSSF  322 (544)
Q Consensus       250 ~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~~~~~~~~l~~~~v~~~G~~~~~~~~~~~  322 (544)
                      ..|+++++.+.    .++..+++.+.+++++++...|..+..+.....   ....++++++.  +++||+++++.+.++|
T Consensus       242 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~--~~~gG~~l~~~~~~~~  319 (579)
T PRK09192        242 ATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRV--AGIGADMIRPDVLHQF  319 (579)
T ss_pred             HhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhhe--eEecCccCCHHHHHHH
Confidence            99999877652    267889999999999988776555554443221   12345667666  9999999999999999


Q ss_pred             HhhcCC-----CeEEecccCccccccccccCCCCCC-----------------------CCCCCCCcccccCCCceEEEE
Q 039837          323 EKKFPG-----VQVQEAYGLTEHSCITLTYGDPANP-----------------------SAGSKKNSVGFILPNLEVKFI  374 (544)
Q Consensus       323 ~~~~~~-----~~i~~~yG~tE~~~~~~~~~~~~~~-----------------------~~~~~~~~~G~~~~~~~~~i~  374 (544)
                      .+.++.     ..+++.||+||++..++........                       .......++|.++++++++|+
T Consensus       320 ~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~  399 (579)
T PRK09192        320 AEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIR  399 (579)
T ss_pred             HHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEE
Confidence            987731     3589999999998665543211000                       000113578999999999999


Q ss_pred             eCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHH
Q 039837          375 NPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAEL  454 (544)
Q Consensus       375 d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~i  454 (544)
                      | +++..++.|+.|||+++|+.++.|||++ ..+...+..++||+|||+|++ .+|+++++||.+|+||++|++|+|.+|
T Consensus       400 d-~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eI  476 (579)
T PRK09192        400 N-EAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDI  476 (579)
T ss_pred             C-CCCCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHH
Confidence            9 5788999999999999999999999999 666677778999999999999 999999999999999999999999999


Q ss_pred             HHHHhcCCCcc--ceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhccc-CCCceeEEEEee--cCCCCCCccc
Q 039837          455 EAILLTHPSVE--DAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVA-TYKKVRVLHFVD--GIPKSHSGKI  529 (544)
Q Consensus       455 E~~l~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~-~~~~p~~~~~~~--~~P~t~~GKi  529 (544)
                      |++|++||+|.  +++|++++++. ++.++++++..++...+.+++.+++++.+. .++.|..++++.  +||+|.+||+
T Consensus       477 E~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~~~~~~lP~t~~GKv  555 (579)
T PRK09192        477 EWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAAVELVPPHSLPRTSSGKL  555 (579)
T ss_pred             HHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCceEEEeCCCCcCCCCCcch
Confidence            99999999998  89999988774 457888887766555567889999998874 688888777774  8999999999


Q ss_pred             chHHHHHHHHH
Q 039837          530 MRRILKDKMLE  540 (544)
Q Consensus       530 ~r~~l~~~~~~  540 (544)
                      +|++|++++.+
T Consensus       556 ~R~~l~~~~~~  566 (579)
T PRK09192        556 SRAKAKKRYLS  566 (579)
T ss_pred             hHHHHHHHHHc
Confidence            99999999865

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=7e-61  Score=469.64  Aligned_cols=502  Identities=26%  Similarity=0.332  Sum_probs=394.1

Q ss_pred             CCCCCCHHHHHHhhhhhcCCceEEEEcc------CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHH
Q 039837           32 VPENVTLPDFVLQDAELYADKVAFVEAV------SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA  105 (544)
Q Consensus        32 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~------~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~  105 (544)
                      .....|+++.+.+.+..+|+.+++-...      .-..+||.|.++++..++..|++.|+++++.|+|+.-|+++|+++.
T Consensus        71 ~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~  150 (691)
T KOG1256|consen   71 FDGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISE  150 (691)
T ss_pred             CCCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhH
Confidence            3467899999999999999999986442      1267899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEec-cchHHHhhcC-------CCcEE-Eecccc------c----cc
Q 039837          106 LGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSY-APIYEKVKGL-------GLPII-VLGEER------I----ES  166 (544)
Q Consensus       106 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~-~~~~~~~~~~-------~~~~~-~~~~~~------~----~~  166 (544)
                      +||...|.+.|||-..++++.++++++++++.+++++ ++....+.+.       .++.+ .+++..      .    ..
T Consensus       151 ~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~  230 (691)
T KOG1256|consen  151 MACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVE  230 (691)
T ss_pred             HHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeE
Confidence            9999999999999999999999999999999999999 4444444331       13333 333221      1    12


Q ss_pred             ccCHHHHHHhhhhcC--------CCCCCCCCCCCCCCcCcceeeccHHHHHHHHHh---hccccC-CcccCccEEEEecc
Q 039837          167 AINWSELIEAADKAG--------NNFSNDDDVKQTDLWISKGVMLTHRNLVANLCS---TLFSVV-PEMIGQVTTLGLIP  234 (544)
Q Consensus       167 ~~~~~~~~~~~~~~~--------~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~---~~~~~~-~~~~~~~~~~~~~p  234 (544)
                      ..+|+++.+.+....        +...+.+.|||||||.||||++||+|+.+.+..   ...... ......|++++.+|
T Consensus       231 v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLP  310 (691)
T KOG1256|consen  231 VYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLP  310 (691)
T ss_pred             EEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCc
Confidence            567888877653222        122233578999999999999999999986543   222211 12234699999999


Q ss_pred             hhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCC----------------------
Q 039837          235 FFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDP----------------------  292 (544)
Q Consensus       235 ~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------------  292 (544)
                      +.|++..+.. ...+..|+++.+.. .|+..+.+.++..+||.+.++|..+.++.+..                      
T Consensus       311 LAHi~er~~~-~~~~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k  388 (691)
T KOG1256|consen  311 LAHIFERVVE-LYTFYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYK  388 (691)
T ss_pred             HHHHHHHHHH-HhHhhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            9999998544 44558899999877 57888888899999999999999887763200                      


Q ss_pred             ----CCCccCc--cc---------------cccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCC
Q 039837          293 ----IVDEFDL--SK---------------LQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPA  351 (544)
Q Consensus       293 ----~~~~~~~--~~---------------l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~  351 (544)
                          ...+...  ..               =+.|.+++|++|+++++...++..+ ++.|+++||+||++..++...   
T Consensus       389 ~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~---  464 (691)
T KOG1256|consen  389 LEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTL---  464 (691)
T ss_pred             HHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEecc---
Confidence                0011111  00               0344599999999999999999998 899999999999985554443   


Q ss_pred             CCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCc
Q 039837          352 NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGD  431 (544)
Q Consensus       352 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  431 (544)
                       + .+...+++|.|+|+++++++|.++..-.+.|..|||+|+|+.++.|||++|+.|.+.++.+||++|||+|+|+++|.
T Consensus       465 -~-~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~  542 (691)
T KOG1256|consen  465 -P-GDNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGT  542 (691)
T ss_pred             -C-CCCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCcc
Confidence             2 33478999999999999999976777677777999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCceee-cceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH-------H-------
Q 039837          432 IFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE-------D-------  496 (544)
Q Consensus       432 ~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~-------~-------  496 (544)
                      +.+.||.+++||+ +|++|.|+.||++..+.+-|.+.+|.+....   ..++++|+++++...+.       .       
T Consensus       543 l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~---~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~  619 (691)
T KOG1256|consen  543 LKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLR---SFLVAIVVPDPEVLKSWAAKDGVKGTFEELCR  619 (691)
T ss_pred             EEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcch---hcEEEEEecChhhchhhHHHccCchhHHHHhc
Confidence            9999999999998 8999999999999999999999999875533   57899999866421110       1       


Q ss_pred             ----------HHHHHHH-hcccCCCceeEEEEe------ecCCCCCCcccchHHHHHHHHHhhhC
Q 039837          497 ----------DIMDFVA-SNVATYKKVRVLHFV------DGIPKSHSGKIMRRILKDKMLEKMRK  544 (544)
Q Consensus       497 ----------~l~~~l~-~~l~~~~~p~~~~~~------~~~P~t~~GKi~r~~l~~~~~~~~~~  544 (544)
                                ++.+.-+ +.+..+.....+...      +.=-+||+-|++|..+.+.|++||++
T Consensus       620 n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~  684 (691)
T KOG1256|consen  620 NLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDE  684 (691)
T ss_pred             ChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHH
Confidence                      1111111 235566666666663      34456899999999999999999863

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=5e-60  Score=485.02  Aligned_cols=438  Identities=16%  Similarity=0.177  Sum_probs=341.5

Q ss_pred             cCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccch------HHHhhc----CCCcEEEecc-cc
Q 039837           95 LPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPI------YEKVKG----LGLPIIVLGE-ER  163 (544)
Q Consensus        95 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~------~~~~~~----~~~~~~~~~~-~~  163 (544)
                      ++|+++++++++||+++|++++|+++.++.+++.++++.++++++|+++..      .+.+..    .....+++.. ..
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            589999999999999999999999999999999999999999999997642      111111    1112222211 00


Q ss_pred             ------cccccCHHHHHHhhh--------h-----cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCccc
Q 039837          164 ------IESAINWSELIEAAD--------K-----AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMI  224 (544)
Q Consensus       164 ------~~~~~~~~~~~~~~~--------~-----~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~  224 (544)
                            ......+..+.....        .     ........+.+||||||.||||++||+++..........+  ++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~--~~~  158 (499)
T PLN03051         81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHM--DIQ  158 (499)
T ss_pred             ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhc--CCC
Confidence                  011223444432100        0     0112334567999999999999999999877665544444  677


Q ss_pred             CccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc-cCHHHHHHHHHHcCceeeecchHHHHHHhcCCC--CCccCccc
Q 039837          225 GQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR-FELRAFLDALITHEVTFAPIVPPIILSLVKDPI--VDEFDLSK  301 (544)
Q Consensus       225 ~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~  301 (544)
                      .+|++++.+|++|.+++ ..++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|++...  ....++++
T Consensus       159 ~~d~~l~~~pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~  237 (499)
T PLN03051        159 PGDVVCWPTNLGWMMGP-WLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSK  237 (499)
T ss_pred             CCCEEEEccCcceeeeh-HHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchh
Confidence            88999999999999987 567889999999998874 678899999999999999999999999987543  23456777


Q ss_pred             cccccEEEecCCCCHhHHHHHHhhc-CCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCC
Q 039837          302 LQLRAVMTAAAPLAPDLLSSFEKKF-PGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGK  380 (544)
Q Consensus       302 l~~~~v~~~G~~~~~~~~~~~~~~~-~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~  380 (544)
                      +|.  +++||+++++++.+++.+.+ .++.+++.||+||++..+.....    ......+++|+|.++++++|+| ++|+
T Consensus       238 Lr~--i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~ivd-~~g~  310 (499)
T PLN03051        238 LRV--FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTL----LQPQAPGAFSTASLGTRFVLLN-DNGV  310 (499)
T ss_pred             heE--EEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccc----cCCCCCccccCCCCCceEEEEC-CCCC
Confidence            777  99999999999998777633 14789999999998754332211    0123457899999999999999 6889


Q ss_pred             cCCCC--CCceEEEecccc--cccccCChhhhhcccCC--------CCeeecCceEEEcCCCcEEEEeecCCceeeccee
Q 039837          381 SLPSN--TPGELCVRSQCV--MQGYYNNEEETARTIDK--------NGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQ  448 (544)
Q Consensus       381 ~~~~g--~~Gel~v~~~~~--~~gy~~~~~~~~~~~~~--------~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~  448 (544)
                      +++.|  +.|||+++||.+  +.|||+++ .+...+++        .+||+|||+|++|+||++++.||.||+||++|++
T Consensus       311 ~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~  389 (499)
T PLN03051        311 PYPDDQPCVGEVALAPPMLGASDRLLNAD-HDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIK  389 (499)
T ss_pred             CCCCCCCcceEEEEecCcCCCCccccCCc-ccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEE
Confidence            99988  589999999976  57999765 33333322        2278999999999999999999999999999999


Q ss_pred             eChHHHHHHHhc-CCCccceEEEeecCCCCC-ceeEEEE---EeCCCC-CCCHHHHHHHH----HhcccCCCceeEEEEe
Q 039837          449 VAPAELEAILLT-HPSVEDAAVVSLPDEEAG-EIPAACV---VMNPNA-KESEDDIMDFV----ASNVATYKKVRVLHFV  518 (544)
Q Consensus       449 v~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~-~~~~~~v---~~~~~~-~~~~~~l~~~l----~~~l~~~~~p~~~~~~  518 (544)
                      |+|.|||++|.+ ||+|.+++|++++++..| +.+++++   +++++. ..+.+++++++    +++|+.++.|..++++
T Consensus       390 v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v  469 (499)
T PLN03051        390 TSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIV  469 (499)
T ss_pred             CCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhcCCccCCceEEEc
Confidence            999999999986 999999999999998888 6788888   666654 35667777665    4557776667679999


Q ss_pred             ecCCCCCCcccchHHHHHHHHHhhh
Q 039837          519 DGIPKSHSGKIMRRILKDKMLEKMR  543 (544)
Q Consensus       519 ~~~P~t~~GKi~r~~l~~~~~~~~~  543 (544)
                      ++||+|++||++|++|++.+.++++
T Consensus       470 ~~lP~t~~GKi~r~~L~~~~~~~~~  494 (499)
T PLN03051        470 PELPRNASNKLLRRVLRDQLKKELS  494 (499)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHhhc
Confidence            9999999999999999998877654

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-59  Score=462.65  Aligned_cols=502  Identities=25%  Similarity=0.345  Sum_probs=407.9

Q ss_pred             CCCCCCCHHHHHHhhh--hhcCCceEEEEcc----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHH
Q 039837           31 PVPENVTLPDFVLQDA--ELYADKVAFVEAV----SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIV  104 (544)
Q Consensus        31 ~~~~~~~l~~~l~~~a--~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~  104 (544)
                      ......|....+..+.  ...++++++++..    +...+||.|+.+.+.++|..|.+.|+++||+|++++|+.++++++
T Consensus        58 ~~g~~ln~~~n~~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia  137 (626)
T KOG1175|consen   58 FPGAFLNACYNCLDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIA  137 (626)
T ss_pred             cccchhhhhHhhhhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHH
Confidence            3344556666665443  2257888887542    224589999999999999999988999999999999999999999


Q ss_pred             HHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEE-----------------Eecccccccc
Q 039837          105 ALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPII-----------------VLGEERIESA  167 (544)
Q Consensus       105 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~  167 (544)
                      ++||.++|++.+++...+++.++...+..++++++++.+..............                 .+--......
T Consensus       138 ~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d  217 (626)
T KOG1175|consen  138 MLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRD  217 (626)
T ss_pred             HHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEeccccc
Confidence            99999999999999999999999999999999999997765443332221000                 0000111123


Q ss_pred             cCHHHHHHhhhhc------CCCCCCCCCCCCCCCcCcceeeccHHHHHHHH-HhhccccCCcccCccEEEEecchhHHHH
Q 039837          168 INWSELIEAADKA------GNNFSNDDDVKQTDLWISKGVMLTHRNLVANL-CSTLFSVVPEMIGQVTTLGLIPFFHIYG  240 (544)
Q Consensus       168 ~~~~~~~~~~~~~------~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~g  240 (544)
                      ..++.........      ....+..+.+|||+||.||++.+|+...+-.. ......+  .+.++|++++.....++.|
T Consensus       218 ~~~~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~--d~q~~dv~~~~~d~GWi~g  295 (626)
T KOG1175|consen  218 LFWSLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF--DLQPSDVLWCASDLGWITG  295 (626)
T ss_pred             ccHHHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec--cCCCcceEEEecccCeeec
Confidence            3444443322111      12233457899999999999999887654444 4444444  8899999999999999999


Q ss_pred             HHHHHHhhHhccceEEEcC--ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCc--cCccccccccEEEecCCCCH
Q 039837          241 ITGICCATLRNKGKVVMMN--RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDE--FDLSKLQLRAVMTAAAPLAP  316 (544)
Q Consensus       241 ~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~l~~~~v~~~G~~~~~  316 (544)
                      .++.++.+|..|+++++.+  ++++..+++.+.++++|++.+.|+.++.|.+......  ..++++|.  +.++||++.+
T Consensus       296 ~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~--~~S~Gepi~~  373 (626)
T KOG1175|consen  296 HSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRT--CGSVGEPINP  373 (626)
T ss_pred             cchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEE--EeecCccCCc
Confidence            9888999999999999976  4589999999999999999999999998876555333  33345666  9999999999


Q ss_pred             hHHHHHHhhcCCC-eEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCC-CCceEEEec
Q 039837          317 DLLSSFEKKFPGV-QVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSN-TPGELCVRS  394 (544)
Q Consensus       317 ~~~~~~~~~~~~~-~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g-~~Gel~v~~  394 (544)
                      +.+..+.+.+ +. .|++.||+||+|+.++......+   ...+++.+.|.+|+.+.|.| ++|+.++.+ +.|+|+++.
T Consensus       374 ~~~ew~~~~~-~~~pv~e~~~qtEtG~~~i~~~~g~~---p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~~~G~l~~~~  448 (626)
T KOG1175|consen  374 EAWEWWKRVT-GLDPIYETYGQTETGGICITPKPGKL---PIKPGSAGKPFPGYDVQILD-ENGNELPPSTGNGELRLKP  448 (626)
T ss_pred             chHHHHHHhc-CccchhhceeeeccCceeeeccCCCC---CcCccccCCCCCCcceEEEC-CCCCCcCCCCceeEEEEeC
Confidence            9999999998 55 69999999999998887652111   57889999999999999999 588888876 889999997


Q ss_pred             --c-cccccccCChhhhhcccCC--CCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEE
Q 039837          395 --Q-CVMQGYYNNEEETARTIDK--NGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV  469 (544)
Q Consensus       395 --~-~~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  469 (544)
                        | +.+++||+|++..+..+..  .|+|.|||.+++|+||++++.||.||+|+++|+++.+.|||+++.+||.|.|++|
T Consensus       449 ~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAv  528 (626)
T KOG1175|consen  449 PWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAV  528 (626)
T ss_pred             CCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheee
Confidence              3 7799999999955444334  7899999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          470 VSLPDEEAGEIPAACVVMNPNAKESE---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       470 ~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ++.+++..|+.+++|+++.++....+   ++|++++++.+.++..|+.|++++.||+|.+||+-|+.||+....+
T Consensus       529 Vg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~  603 (626)
T KOG1175|consen  529 VGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK  603 (626)
T ss_pred             ecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhccC
Confidence            99999999999999999999854333   5677778888999999999999999999999999999999987543

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=3.7e-58  Score=465.36  Aligned_cols=429  Identities=24%  Similarity=0.375  Sum_probs=360.7

Q ss_pred             eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccc
Q 039837           65 TYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAP  144 (544)
Q Consensus        65 Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~  144 (544)
                      ||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+.+..++++++++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hHHHhhcCCCcEEEecccccccccCHHHHHHh-------hhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhcc
Q 039837          145 IYEKVKGLGLPIIVLGEERIESAINWSELIEA-------ADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLF  217 (544)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~  217 (544)
                      .....    ....           .+......       .............+||||||.||+|.+||+++...+.....
T Consensus        81 ~~~~~----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~  145 (436)
T TIGR01923        81 LEEKD----FQAD-----------SLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKE  145 (436)
T ss_pred             ccccc----eeec-----------chHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHh
Confidence            42110    0000           00000000       00111122335678999999999999999999998888877


Q ss_pred             ccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCcc
Q 039837          218 SVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEF  297 (544)
Q Consensus       218 ~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  297 (544)
                      .+  +..++++++..+|++|.+++ ..++.++..|+++++.+.++  .+++.++++++|++.++|+++..|++.....  
T Consensus       146 ~~--~~~~~d~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~~--~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~--  218 (436)
T TIGR01923       146 NL--GFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKFN--QLLEMIANERVTHISLVPTQLNRLLDEGGHN--  218 (436)
T ss_pred             hc--CCCCCceEEEccCcHhHHHH-HHHHHHHhcCceEEecchHH--HHHHHHHHhCCeEEEeHHHHHHHHHhCcCCC--
Confidence            77  78889999999999999888 56789999999999987653  8999999999999999999999998865321  


Q ss_pred             CccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCC
Q 039837          298 DLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPE  377 (544)
Q Consensus       298 ~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~  377 (544)
                        ++++.  ++++|+++++++.+.+.+.  ++.+++.||+||++..++.....    ......++|.|++++++++.+.+
T Consensus       219 --~~l~~--~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~----~~~~~~~~G~~~~~~~~~i~~~~  288 (436)
T TIGR01923       219 --ENLRK--ILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPE----MLHARPDVGRPLAGREIKIKVDN  288 (436)
T ss_pred             --CceEE--EEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCcc----ccccccCCCccCCCcEEEEEeCC
Confidence              45555  9999999999999988774  89999999999998765543311    11112248999999999994422


Q ss_pred             CCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHH
Q 039837          378 TGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAI  457 (544)
Q Consensus       378 ~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~  457 (544)
                      .      ++.|||+++|+.++.||+++++.+...+ .++||+|||+++++.||.+++.||.+|++|++|.++++.+||++
T Consensus       289 ~------~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~  361 (436)
T TIGR01923       289 K------EGHGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETV  361 (436)
T ss_pred             C------CCceEEEEECCccchhhCCChhhhhhhh-cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHH
Confidence            2      2779999999999999999888776655 67999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHH
Q 039837          458 LLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL  534 (544)
Q Consensus       458 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l  534 (544)
                      |++++.|.++++++.++...+..+.+++++.+  ..+..++.+++++.++.+++|..++++++||+|++||++|++|
T Consensus       362 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~l~~~l~~~~~p~~i~~~~~iP~t~~GK~~r~~L  436 (436)
T TIGR01923       362 LYQHPGIQEAVVVPKPDAEWGQVPVAYIVSES--DISQAKLIAYLTEKLAKYKVPIAFEKLDELPYNASGKILRNQL  436 (436)
T ss_pred             HHhCCCeeEEEEeCCcchhcCCeeEEEEEECC--CCCHHHHHHHHHHhhhCCCCCeEEEEecCCCCCCCCceecccC
Confidence            99999999999999887777778888888765  3677899999999999999999999999999999999999865

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8e-58  Score=458.26  Aligned_cols=406  Identities=18%  Similarity=0.233  Sum_probs=350.2

Q ss_pred             EEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhc
Q 039837           55 FVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAA  134 (544)
Q Consensus        55 ~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~  134 (544)
                      +++.  ++++||+||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+.+..+++++
T Consensus         2 ~~~~--~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~   78 (414)
T PRK08308          2 LIVN--DEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRA   78 (414)
T ss_pred             eEec--CceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhC
Confidence            4554  689999999999999999985 6899999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHh
Q 039837          135 DAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCS  214 (544)
Q Consensus       135 ~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~  214 (544)
                      +++++++++....           ..  .             .............+||||||.||||.+||+++.+++..
T Consensus        79 ~~~~~i~~~~~~~-----------~~--~-------------~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~  132 (414)
T PRK08308         79 GCHGLLYGESDFT-----------KL--E-------------AVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEA  132 (414)
T ss_pred             CCCEEEecCcccc-----------cc--c-------------CCCCCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHH
Confidence            9999998753210           00  0             00112223447889999999999999999999998887


Q ss_pred             hccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCC
Q 039837          215 TLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIV  294 (544)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  294 (544)
                      ....+  ....+++.+..+|++|.+|+...++.++..|+++++.+..++..+++.++++++|++.++|+++..|.+....
T Consensus       133 ~~~~~--~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~  210 (414)
T PRK08308        133 YNEAL--NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPG  210 (414)
T ss_pred             HHHhh--CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc
Confidence            77666  6678889999999999999888889999999999999888999999999999999999999999999875432


Q ss_pred             CccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEE
Q 039837          295 DEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFI  374 (544)
Q Consensus       295 ~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~  374 (544)
                      .    .+++.  ++.+|+++++++.++|.+.  ..++++.||+||++.+....       .....+++|+|++++++++.
T Consensus       211 ~----~~l~~--~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~-------~~~~~~~~G~p~~~~~~~~~  275 (414)
T PRK08308        211 T----FQFHA--VMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSICP-------DMKSHLDLGNPLPHVSVSAG  275 (414)
T ss_pred             c----ccccE--EEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeeecC-------CCCCCCccCccCCCeEEEEe
Confidence            1    23444  9999999999999999987  57899999999998544321       22345679999999999987


Q ss_pred             eCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHH
Q 039837          375 NPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAEL  454 (544)
Q Consensus       375 d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~i  454 (544)
                      +.       .++.|||++++                   .++||+|||+|++++||++++.||.+|+||++|++|+|.+|
T Consensus       276 ~~-------~~~~gel~v~~-------------------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eI  329 (414)
T PRK08308        276 SD-------ENAPEEIVVKM-------------------GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEV  329 (414)
T ss_pred             cC-------CCCCceEEEEc-------------------CCceEECCceEEECCCccEEEecccCCeEEECCEEECHHHH
Confidence            52       35679999974                   35799999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHH
Q 039837          455 EAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL  534 (544)
Q Consensus       455 E~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l  534 (544)
                      |++|.++|+|.+++|++.+++..++.++++++...  ..+.+++.++++++|+.+++|..++++++||+|++||++|+.|
T Consensus       330 E~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~  407 (414)
T PRK08308        330 EDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EIDPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLL  407 (414)
T ss_pred             HHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CCCHHHHHHHHHHhCccccCCcEEEEeccCCCCCCcCeehhhh
Confidence            99999999999999999998888888888887654  5677899999999999999999999999999999999999954

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.6e-58  Score=478.01  Aligned_cols=486  Identities=22%  Similarity=0.311  Sum_probs=377.7

Q ss_pred             CHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeee
Q 039837           37 TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFS  116 (544)
Q Consensus        37 ~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v  116 (544)
                      ++.+.|.+.|+..|+.+++.+.+.++.+||.||+++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~   82 (545)
T PRK07768          3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT   82 (545)
T ss_pred             hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence            57888999999999999998776678899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHH-------HHHHHhcCceEEEeccchHHHhhcC---CCcEEEecccccccccCHHHHHHhh----hhcCC
Q 039837          117 GANPTAHASEL-------KKQVDAADAKLIVSYAPIYEKVKGL---GLPIIVLGEERIESAINWSELIEAA----DKAGN  182 (544)
Q Consensus       117 ~l~~~~~~~~l-------~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  182 (544)
                      ++++..+.+++       ..+++.++++.+++++.........   ....+..           +++....    .....
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~~  151 (545)
T PRK07768         83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVLTV-----------ADLLAADPIDPVETGE  151 (545)
T ss_pred             ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcccCCceeeh-----------hhhcccCCCCcCCCCC
Confidence            99998775544       5567888999999987654433221   1122211           1111110    11122


Q ss_pred             CCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCc-cEEEEecchhHHHHHHHHHHhhHhccceEEEcCc-
Q 039837          183 NFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQ-VTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR-  260 (544)
Q Consensus       183 ~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-  260 (544)
                      .....+.+||||||.||||++||+++...+......+  ++... +++++.+|++|.+++...++.++..|+++++..+ 
T Consensus       152 ~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~--~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~  229 (545)
T PRK07768        152 DDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA--EFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPM  229 (545)
T ss_pred             CCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc--CCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHH
Confidence            3334678999999999999999999998887766665  55655 8999999999999987778888999999988764 


Q ss_pred             ---cCHHHHHHHHHHcCceeeecchHHHHHHhcCC----CCCccCccccccccEEEecCCCCHhHHHHHHhh---c--CC
Q 039837          261 ---FELRAFLDALITHEVTFAPIVPPIILSLVKDP----IVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKK---F--PG  328 (544)
Q Consensus       261 ---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~---~--~~  328 (544)
                         .++..+.+.+++++++++.+.|..+..+.+..    .....++++++.  ++++|+++++++.+.+.+.   +  +.
T Consensus       230 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~--~~~~g~~~~~~~~~~~~~~~~~~g~~~  307 (545)
T PRK07768        230 DFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRF--ALNGAEPIDPADVEDLLDAGARFGLRP  307 (545)
T ss_pred             HHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheee--EEeccCCCCHHHHHHHHHHHHhcCCCc
Confidence               26778899999999999988777766655422    112355667676  9999999999999998874   4  22


Q ss_pred             CeEEecccCccccccccccCCCCC---------------------CCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCC
Q 039837          329 VQVQEAYGLTEHSCITLTYGDPAN---------------------PSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTP  387 (544)
Q Consensus       329 ~~i~~~yG~tE~~~~~~~~~~~~~---------------------~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~  387 (544)
                      ..+++.||+||++..+........                     .......+++|+|+++++++++| +++++++.|+.
T Consensus       308 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~  386 (545)
T PRK07768        308 EAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGV  386 (545)
T ss_pred             ccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCCE
Confidence            359999999999875543221100                     00122446899999999999999 67899999999


Q ss_pred             ceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccce
Q 039837          388 GELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDA  467 (544)
Q Consensus       388 Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  467 (544)
                      |||+++|+.++.||++.+.... .++.++||+|||+++++++|.++++||.+|+|+++|.++++.+||+.|+++|+|.++
T Consensus       387 Gel~v~~~~~~~gy~~~~~~~~-~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~  465 (545)
T PRK07768        387 GVIELRGESVTPGYLTMDGFIP-AQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPG  465 (545)
T ss_pred             EEEEEccCcccccccCCCCCcc-cccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccc
Confidence            9999999999999998654433 334678999999999999999999999999999999999999999999999999998


Q ss_pred             EEEeec--CCCCCceeEEEEEeCCCCC-CCHHHHHHHHHhcccCC--CceeEEEEee--cCCCCCCcccchHHHHHHHH
Q 039837          468 AVVSLP--DEEAGEIPAACVVMNPNAK-ESEDDIMDFVASNVATY--KKVRVLHFVD--GIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       468 ~v~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~l~~~l~~~l~~~--~~p~~~~~~~--~~P~t~~GKi~r~~l~~~~~  539 (544)
                      +|+++.  +...++..++++....... ....++.+.+++.+...  ..|..+.+++  +||+|++||++|+.|+++|.
T Consensus       466 ~vv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~  544 (545)
T PRK07768        466 NAVAVRLDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELVT  544 (545)
T ss_pred             eEEEEEecCCCCceEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence            777654  3333444444444332211 12245667777766543  5788788876  89999999999999999874

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=5.4e-55  Score=410.64  Aligned_cols=489  Identities=21%  Similarity=0.319  Sum_probs=402.7

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG  112 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G  112 (544)
                      -...|+.+.+.++++++|+++|+++..+++.+||+|+.++++++|+.|...|++.||.|+++|+|.++++.++|+++++|
T Consensus        74 r~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlG  153 (649)
T KOG1179|consen   74 RERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLG  153 (649)
T ss_pred             ccCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhC
Confidence            35679999999999999999999998667899999999999999999999999999999999999999999999999999


Q ss_pred             CeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-------CcEEEecccccccccCHHHHHHhhhhcCC---
Q 039837          113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-------LPIIVLGEERIESAINWSELIEAADKAGN---  182 (544)
Q Consensus       113 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  182 (544)
                      ++...||.+.-.+.+.+.++.++++++|++.+..+.+.+..       +.....+  ........+++....+....   
T Consensus       154 v~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~--~~~~~~g~~~L~~~l~~~~~~~v  231 (649)
T KOG1179|consen  154 VITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLG--PTSVPDGIESLLAKLSAAPKHPV  231 (649)
T ss_pred             ceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecC--CCCCCchHHHHHHhhcccccCCC
Confidence            99999999999999999999999999999999887776652       2222222  22223333344333221111   


Q ss_pred             ----------CCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhcc
Q 039837          183 ----------NFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNK  252 (544)
Q Consensus       183 ----------~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G  252 (544)
                                ..+..-.+||||||.||+.++||......+......+  +++++|+++..+|++|..+.+..+..++..|
T Consensus       232 p~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~--g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~G  309 (649)
T KOG1179|consen  232 PVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF--GMTADDVVYTTLPLYHSAAGILGIGGCLLHG  309 (649)
T ss_pred             CcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh--CCCccceEEEcchhHHHHHHHHHHHHHHhcC
Confidence                      1112235799999999999999999988887677777  8999999999999999999999999999999


Q ss_pred             ceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEE
Q 039837          253 GKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQ  332 (544)
Q Consensus       253 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~  332 (544)
                      +++++-.+++...|++...++++|++.-.--+.+.|++.+......-..+|+    .-|..+.+++|+.|.++|...+|.
T Consensus       310 aT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRl----a~GNGLR~diW~~Fv~RFg~~~Ig  385 (649)
T KOG1179|consen  310 ATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRL----AYGNGLRPDIWQQFVKRFGIIKIG  385 (649)
T ss_pred             ceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEE----EecCCCCchHHHHHHHHcCCCeEE
Confidence            9999999999999999999999999999999999999987655444334443    567789999999999999666699


Q ss_pred             ecccCccccccccccCCCCCCCCCCCCCcccc------cCCCceEEEEeCCCCC----------cCCCCCCceEEEe--c
Q 039837          333 EAYGLTEHSCITLTYGDPANPSAGSKKNSVGF------ILPNLEVKFINPETGK----------SLPSNTPGELCVR--S  394 (544)
Q Consensus       333 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~------~~~~~~~~i~d~~~~~----------~~~~g~~Gel~v~--~  394 (544)
                      +.||+||........        +...+.+|+      -+--+++-=+|+++|+          ++++||.|.++-+  .
T Consensus       386 E~YgaTEgn~~~~N~--------d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~  457 (649)
T KOG1179|consen  386 EFYGATEGNSNLVNY--------DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQ  457 (649)
T ss_pred             EEeccccCcceeeee--------cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEecc
Confidence            999999976544332        233344443      2222344445666665          4788999966433  2


Q ss_pred             ccc---cccccCChhhhhccc------CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCcc
Q 039837          395 QCV---MQGYYNNEEETARTI------DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVE  465 (544)
Q Consensus       395 ~~~---~~gy~~~~~~~~~~~------~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~  465 (544)
                      ...   +.||.+..+.|+++.      .+|-||.|||+-.+|+.|++|+.+|.+|.++..|+||+..|+|.+|..+.++.
T Consensus       458 k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~  537 (649)
T KOG1179|consen  458 KNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQ  537 (649)
T ss_pred             CCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhcccc
Confidence            233   889999888887654      45679999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeecCCCC-CceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 039837          466 DAAVVSLPDEEA-GEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK  537 (544)
Q Consensus       466 ~~~v~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~  537 (544)
                      |+.|+++.-+.. |..-.|.++..|+.+.+.+.+-+++++.||+|.+|.++.++++|++|.+-|..+.+|+++
T Consensus       538 dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~e  610 (649)
T KOG1179|consen  538 DVNVYGVTVPGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQKE  610 (649)
T ss_pred             ceeEEEEecCCccCccceEEEEecCcccchHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHHHc
Confidence            999999976654 334455566788888899999999999999999999999999999999999999998875

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=1.4e-56  Score=451.03  Aligned_cols=394  Identities=30%  Similarity=0.490  Sum_probs=318.2

Q ss_pred             HHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCC
Q 039837           42 VLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPT  121 (544)
Q Consensus        42 l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~  121 (544)
                      |+++|+++||++|+++ ..++.+||+||+++++++|..|++.|+++||+|+++++|+++++++++||+++|++++|++|.
T Consensus         1 f~~~a~~~pd~~a~~~-~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~   79 (417)
T PF00501_consen    1 FERQAQRYPDRIALID-DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPS   79 (417)
T ss_dssp             HHHHHHHSTTSEEEEE-TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETT
T ss_pred             ChhHHhhCCCceEEEE-CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccccccc
Confidence            5789999999999999 348999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCceEEEe----ccchHHHhhc----CCC--cEEEecccccccccCHHHHHHh--hhh--cCCCCCCC
Q 039837          122 AHASELKKQVDAADAKLIVS----YAPIYEKVKG----LGL--PIIVLGEERIESAINWSELIEA--ADK--AGNNFSND  187 (544)
Q Consensus       122 ~~~~~l~~~l~~~~~~~ii~----~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~  187 (544)
                      ++.+++.++++.++++++|+    +......+..    ...  ..+.++................  ...  ........
T Consensus        80 ~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (417)
T PF00501_consen   80 LSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEALKSASLSDEPQSPEDSPDDPAF  159 (417)
T ss_dssp             SSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHHHHHHHCHCSHSTTHTTTSEEE
T ss_pred             cccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccccccccccccccccccccCCCCccceeE
Confidence            99999999999999999997    2222221111    111  1333332221111111110000  000  02234446


Q ss_pred             CCCCCCCCcCcceeeccHHHHHHHHHhhc--cccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccC---
Q 039837          188 DDVKQTDLWISKGVMLTHRNLVANLCSTL--FSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFE---  262 (544)
Q Consensus       188 ~~~tsgttG~PKgV~~t~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~---  262 (544)
                      ..+||||||.||+|.+||+++++.+..+.  ..+  ++.  +++++.+|++|.+|+...++.++..|+++++++...   
T Consensus       160 i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~--~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~  235 (417)
T PF00501_consen  160 ILFTSGTTGKPKGVVLTHRNLLAQARALALPEYF--GLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFD  235 (417)
T ss_dssp             EEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTT--TTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHH
T ss_pred             eecccccccccccccccccccccccccccccccc--ccC--ceEEeeccccccccccccccccccccccccccccccccc
Confidence            78999999999999999999999987764  112  223  599999999999998789999999999999998654   


Q ss_pred             HHHHHHHHHHcCceeeecchHHHHHHhcCCCCC----ccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCc
Q 039837          263 LRAFLDALITHEVTFAPIVPPIILSLVKDPIVD----EFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLT  338 (544)
Q Consensus       263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  338 (544)
                      +..+++.++++++|++.++|+++..|++.....    ..+++++|.  ++++|+++++++.+++++.++.+++++.||+|
T Consensus       236 ~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~--v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t  313 (417)
T PF00501_consen  236 PESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRT--VISGGEPLPPDLLRRLRKAFGNAPIINLYGST  313 (417)
T ss_dssp             HHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SE--EEEESST-CHHHHHHHHHHHTTSEEEEEEEEG
T ss_pred             cccchhcccccccccccccccccccccccccccccccccccccccc--cccccccCChhhccccccccccccceeccccc
Confidence            467899999999999999999999999833222    346777777  99999999999999999999556999999999


Q ss_pred             cccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCee
Q 039837          339 EHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWL  418 (544)
Q Consensus       339 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~  418 (544)
                      |++.+++...   ........+++|.|+++++++|+|+++++++++|+.|||+++|+.++.||+++|+.+...|..+|||
T Consensus       314 E~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~  390 (417)
T PF00501_consen  314 ETGSIATIRP---PEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWY  390 (417)
T ss_dssp             GGSSEEEEEE---TTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEE
T ss_pred             ccceeeeccc---ccccccccccccccccccccccccccccccccccccccccccCCccceeeeccccccccccccccce
Confidence            9998887542   0112245678999999999999997779999999999999999999999999999999998666899


Q ss_pred             ecCceEEEcCCCcEEEEeecCCceeec
Q 039837          419 HTGDIGYIDDDGDIFIVDRIKELIKYK  445 (544)
Q Consensus       419 ~TGD~~~~~~~g~~~~~GR~~d~i~~~  445 (544)
                      +|||+|++|+||++++.||.||+||++
T Consensus       391 ~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  391 RTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             EEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             ecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            999999999999999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-55  Score=411.97  Aligned_cols=505  Identities=23%  Similarity=0.302  Sum_probs=395.4

Q ss_pred             CCCCCCCCCHHHHHHhhhhhcCCceEEEEc----------cCC-----------ceeeHHHHHHHHHHHHHHHHHcCCCC
Q 039837           29 AVPVPENVTLPDFVLQDAELYADKVAFVEA----------VSG-----------KAYTYAQVARDTRGFAKALRSLGLRK   87 (544)
Q Consensus        29 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~----------~~~-----------~~~Ty~el~~~~~~la~~L~~~Gi~~   87 (544)
                      ..+.+.-.|+.+.+.+.++++.++.++-..          .+|           ..+||.|+.+++.++|++|.+.|+++
T Consensus        34 ~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~  113 (678)
T KOG1180|consen   34 SPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKP  113 (678)
T ss_pred             CCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCC
Confidence            344556679999999999999999987321          112           46799999999999999999999998


Q ss_pred             CCE-EEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-----CcE-EEec
Q 039837           88 GQV-VIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----LPI-IVLG  160 (544)
Q Consensus        88 gd~-V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~~-~~~~  160 (544)
                      ++. ++|+++.+.+|+.+++||++-+...|.+-..+..+.+.+-++.++++.+||+.+.++.+....     ++. +..+
T Consensus       114 ~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~~d  193 (678)
T KOG1180|consen  114 KETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIYFD  193 (678)
T ss_pred             CCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEEec
Confidence            776 999999999999999999999999999999999999999999999999999999888664431     232 2333


Q ss_pred             c---c-----------ccccccCHHHHHHhhhhc-------CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhcccc
Q 039837          161 E---E-----------RIESAINWSELIEAADKA-------GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSV  219 (544)
Q Consensus       161 ~---~-----------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~  219 (544)
                      +   .           ......+++++.......       .+...+.+.+|||+||.||||+++|+|+.+.+.......
T Consensus       194 ~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v  273 (678)
T KOG1180|consen  194 PIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENV  273 (678)
T ss_pred             CCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccC
Confidence            1   1           112234566666544332       122233467899999999999999999999998887766


Q ss_pred             CCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHH--------HHHHHcCceeeecchHHHHHHhcC
Q 039837          220 VPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFL--------DALITHEVTFAPIVPPIILSLVKD  291 (544)
Q Consensus       220 ~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~--------~~i~~~~~t~~~~~P~~~~~l~~~  291 (544)
                      . .+.+.|+++..+|+.|++.+. +=+.++.-|+.+-..++.+...-.        ..+...+||++.++|..+.+..+.
T Consensus       274 ~-~lg~~D~yi~yLPLAHIlEl~-aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKg  351 (678)
T KOG1180|consen  274 P-ELGPKDRYIAYLPLAHILELT-AELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKG  351 (678)
T ss_pred             c-ccCCCceEEEechHHHHHHHH-HHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHH
Confidence            5 789999999999999999994 456788899888876643322222        223456899999999887665321


Q ss_pred             C--------------------------CCCcc---Ccc-----------ccccccEEEecCCCCHhHHHHHHhhcCCCeE
Q 039837          292 P--------------------------IVDEF---DLS-----------KLQLRAVMTAAAPLAPDLLSSFEKKFPGVQV  331 (544)
Q Consensus       292 ~--------------------------~~~~~---~~~-----------~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i  331 (544)
                      .                          +....   .+.           .=++|.+++||++++++..+.+.-.+ .+++
T Consensus       352 Vl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~-C~Pv  430 (678)
T KOG1180|consen  352 VLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICF-CCPV  430 (678)
T ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhc-cccc
Confidence            0                          00000   000           11356699999999999988888877 7799


Q ss_pred             EecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCC--CceEEEecccccccccCChhhhh
Q 039837          332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNT--PGELCVRSQCVMQGYYNNEEETA  409 (544)
Q Consensus       332 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~--~Gel~v~~~~~~~gy~~~~~~~~  409 (544)
                      ..+||.||++...+...     ..+...+.+|.|++.++++++|-+++.=.+.+.  .||||++|+++..|||++|+.|.
T Consensus       431 ~qGYGLTEtca~~tv~e-----~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~  505 (678)
T KOG1180|consen  431 LQGYGLTETCAAATVLE-----PEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTK  505 (678)
T ss_pred             cccccccchhcccEecC-----hhhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhh
Confidence            99999999987776652     367778899999999999999965554444443  79999999999999999999999


Q ss_pred             cccCC-CC--eeecCceEEEcCCCcEEEEeecCCceee-cceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEE
Q 039837          410 RTIDK-NG--WLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACV  485 (544)
Q Consensus       410 ~~~~~-~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v  485 (544)
                      +.|.. +|  ||+|||+|++.+||+|.+.+|++|.+|+ +|+.|+++.+|.+++..|.|.+.+|++....   ..++++|
T Consensus       506 e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~---s~~VaiV  582 (678)
T KOG1180|consen  506 EDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNK---SKPVAIV  582 (678)
T ss_pred             hhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEeccccc---ceeEEEE
Confidence            99977 78  9999999999999999999999999998 9999999999999999999999999976544   6889999


Q ss_pred             EeCCCC--------CCCH-----------------HHHHHHH-HhcccCCCceeEEEEeec------CCCCCCcccchHH
Q 039837          486 VMNPNA--------KESE-----------------DDIMDFV-ASNVATYKKVRVLHFVDG------IPKSHSGKIMRRI  533 (544)
Q Consensus       486 ~~~~~~--------~~~~-----------------~~l~~~l-~~~l~~~~~p~~~~~~~~------~P~t~~GKi~r~~  533 (544)
                      ++.+..        ....                 ++|.+.- .+.|..+.+|..|++.++      =-.|..-|+.|+.
T Consensus       583 VPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~  662 (678)
T KOG1180|consen  583 VPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKE  662 (678)
T ss_pred             cCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHHhhHHH
Confidence            987541        1111                 1222222 345889999999988743      1234557999999


Q ss_pred             HHHHHHHhhhC
Q 039837          534 LKDKMLEKMRK  544 (544)
Q Consensus       534 l~~~~~~~~~~  544 (544)
                      ++..|+++|++
T Consensus       663 I~~~~k~ei~~  673 (678)
T KOG1180|consen  663 ILAAYKKEIDR  673 (678)
T ss_pred             HHHHHHHHHHH
Confidence            99999999863

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=2e-52  Score=419.87  Aligned_cols=395  Identities=24%  Similarity=0.328  Sum_probs=327.3

Q ss_pred             eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEecc
Q 039837           65 TYAQVARDTRGFAKALRS-LGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYA  143 (544)
Q Consensus        65 Ty~el~~~~~~la~~L~~-~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~  143 (544)
                      ||.||.++++++|++|.+ .|+++||+|+++++|+.+++++++||+++|++++|+++.++.+.+.++++++++++++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             chHHHhhcCCCcEEEecccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcc
Q 039837          144 PIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEM  223 (544)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~  223 (544)
                      +....+........................................+||||||.||+|.+||+++..........+  ..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~--~~  158 (408)
T TIGR01733        81 ALASRLAGLVLPIILVDPLELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRY--GL  158 (408)
T ss_pred             chhhhccccCCceEEechhhhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhc--CC
Confidence            8777665544333332211000000000000000001122334668899999999999999999999888887766  77


Q ss_pred             cCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccC---HHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCcc
Q 039837          224 IGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFE---LRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLS  300 (544)
Q Consensus       224 ~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  300 (544)
                      ..+++++...|++|.+++ ..++.++..|+++++.+...   +..+.+.++++++|.+.++|.++..|++...   ..++
T Consensus       159 ~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~---~~~~  234 (408)
T TIGR01733       159 DPDDRVLQFASLSFDASV-EEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP---PALA  234 (408)
T ss_pred             CCCceEEEecCCccchhH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh---hccc
Confidence            788999999999999887 67899999999999887543   6889999999999999999999999998654   4566


Q ss_pred             ccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCC-CCCcccccCCCceEEEEeCCCC
Q 039837          301 KLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGS-KKNSVGFILPNLEVKFINPETG  379 (544)
Q Consensus       301 ~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~-~~~~~G~~~~~~~~~i~d~~~~  379 (544)
                      +++.  ++++|+++++++++.|.+.++++.+++.||+||++.++......... ... ...++|.|++++.++|+|+ ++
T Consensus       235 ~l~~--v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~~~-~~  310 (408)
T TIGR01733       235 SLRL--VILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADD-APRESPVPIGRPLANTRLYVLDD-DL  310 (408)
T ss_pred             CceE--EEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccc-cCCccccccCcccCCceEEEECC-CC
Confidence            7777  99999999999999999999669999999999999777533211111 111 3678999999999999995 48


Q ss_pred             CcCCCCCCceEEEecccccccccCChhhhhcccCCC------C--eeecCceEEEcCCCcEEEEeecCCceeecceeeCh
Q 039837          380 KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKN------G--WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAP  451 (544)
Q Consensus       380 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~------~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~  451 (544)
                      +.++.|+.|||+++|+.++.||+++++.+...|...      +  ||+|||+++++++|++++.||.+|+++++|++++|
T Consensus       311 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~  390 (408)
T TIGR01733       311 RPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIEL  390 (408)
T ss_pred             CCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEech
Confidence            999999999999999999999999999888776332      2  99999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCccceEE
Q 039837          452 AELEAILLTHPSVEDAAV  469 (544)
Q Consensus       452 ~~iE~~l~~~~~v~~~~v  469 (544)
                      .+||+++.+++.|.+++|
T Consensus       391 ~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       391 GEIEAALLRHPGVREAVV  408 (408)
T ss_pred             HHHHHHHhcCcchhhhcC
Confidence            999999999999998765

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.6e-46  Score=367.64  Aligned_cols=317  Identities=26%  Similarity=0.387  Sum_probs=272.7

Q ss_pred             CCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEc---Cc
Q 039837          184 FSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM---NR  260 (544)
Q Consensus       184 ~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~---~~  260 (544)
                      ......+||||||.||||++||+++.+........+    ...+.++..+|++|.+|+ ..++.++..|+++++.   ..
T Consensus        36 d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~----~~~~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v~~~~~~~  110 (358)
T PRK07824         36 DVALVVATSGTTGTPKGAMLTAAALTASADATHDRL----GGPGQWLLALPAHHIAGL-QVLVRSVIAGSEPVELDVSAG  110 (358)
T ss_pred             CeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc----CCCCeEEEECChHHHHHH-HHHHHHHHcCCeEEecCcCCC
Confidence            345778999999999999999999988877655443    345678899999999998 4567788888888873   35


Q ss_pred             cCHHHHHHHHHHcC--ceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCc
Q 039837          261 FELRAFLDALITHE--VTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLT  338 (544)
Q Consensus       261 ~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  338 (544)
                      +++..+++.+++++  .++...+|..+..++..... ...+++++.  +++||+++++++.+++.+.  ++++++.||+|
T Consensus       111 ~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~~~~~~l~~--i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~T  185 (358)
T PRK07824        111 FDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-TAALAELDA--VLVGGGPAPAPVLDAAAAA--GINVVRTYGMS  185 (358)
T ss_pred             cCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-cCCcccceE--EEECCCCCCHHHHHHHHhc--CCcEEecccCC
Confidence            78999999999998  56677789888877765432 234566666  9999999999999998864  89999999999


Q ss_pred             cccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCee
Q 039837          339 EHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWL  418 (544)
Q Consensus       339 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~  418 (544)
                      |++..+.               ..|.|++++++++.|            |||+++|+.++.||+++++.+  .+..++||
T Consensus       186 E~~~~~~---------------~~G~~~~g~~v~i~~------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~  236 (358)
T PRK07824        186 ETSGGCV---------------YDGVPLDGVRVRVED------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWF  236 (358)
T ss_pred             ccCCCcC---------------cCceeCCCCEEEecC------------CEEEEecCccccccCCCcccc--cccCCCce
Confidence            9875331               258899999999954            999999999999999988754  34467899


Q ss_pred             ecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHH
Q 039837          419 HTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDI  498 (544)
Q Consensus       419 ~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  498 (544)
                      +|||+|++ .+|.+++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..|+.++++++...+...+.+++
T Consensus       237 ~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i  315 (358)
T PRK07824        237 RTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEAL  315 (358)
T ss_pred             ecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHHHH
Confidence            99999999 89999999999999999999999999999999999999999999998888899999998777667788999


Q ss_pred             HHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          499 MDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       499 ~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      ++++++.|+.+++|..++++++||+|.+||++|++|+++|.+
T Consensus       316 ~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  357 (358)
T PRK07824        316 RAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG  357 (358)
T ss_pred             HHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence            999999999999999999999999999999999999999865

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=2.8e-44  Score=391.54  Aligned_cols=464  Identities=14%  Similarity=0.088  Sum_probs=338.1

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEc-cCC--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHH
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEA-VSG--KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIM  109 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~-~~~--~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~  109 (544)
                      +...|+.++|.+.++++|+++|+... ..+  +++||+|+.++++++|.+|.+.|+++||+|+|+++|+++|+++.+||+
T Consensus       424 ~~~~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~  503 (1452)
T PTZ00297        424 AGVRSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACA  503 (1452)
T ss_pred             ccCCCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            34469999999999999999998642 112  679999999999999999999999999999999999999999999999


Q ss_pred             HhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC---CCc-EEEeccc---cc--------ccccCHHHHH
Q 039837          110 AAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL---GLP-IIVLGEE---RI--------ESAINWSELI  174 (544)
Q Consensus       110 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~-~~~~~~~---~~--------~~~~~~~~~~  174 (544)
                      ++|++.||+.+  +.+++.+++++++++++|++.+....+.+.   .++ +++++..   ..        .....|+++.
T Consensus       504 ~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll  581 (1452)
T PTZ00297        504 LYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVE  581 (1452)
T ss_pred             HcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHHHH
Confidence            99999999975  467999999999999999998877766443   233 3344321   00        0134577776


Q ss_pred             Hhhhh--c------CCCCCCCCC---CCCCCCcCcceeeccHHHHHHHHHhhcccc-CCcccCccEEEEecchhHHHHHH
Q 039837          175 EAADK--A------GNNFSNDDD---VKQTDLWISKGVMLTHRNLVANLCSTLFSV-VPEMIGQVTTLGLIPFFHIYGIT  242 (544)
Q Consensus       175 ~~~~~--~------~~~~~~~~~---~tsgttG~PKgV~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~g~~  242 (544)
                      .....  .      .......+.   +||||||.||||++||+|++.++....... ......++++++++|++|+++. 
T Consensus       582 ~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er-  660 (1452)
T PTZ00297        582 QKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNR-  660 (1452)
T ss_pred             hcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHH-
Confidence            64321  0      011111123   499999999999999999999988765422 1134578999999999999996 


Q ss_pred             HHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCC-------------------------cc
Q 039837          243 GICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVD-------------------------EF  297 (544)
Q Consensus       243 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------~~  297 (544)
                      ...+.++..|+++..   +++..+++.|++++||+++++|+++..+.+....+                         ..
T Consensus       661 ~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~  737 (1452)
T PTZ00297        661 VFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHR  737 (1452)
T ss_pred             HHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCC
Confidence            456778899999874   36889999999999999999999988764321000                         00


Q ss_pred             Cc---------cc------cccccEEEecC--CCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCC
Q 039837          298 DL---------SK------LQLRAVMTAAA--PLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKN  360 (544)
Q Consensus       298 ~~---------~~------l~~~~v~~~G~--~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~  360 (544)
                      ..         +.      =++|.+++||.  +++..+.     .  ++++..+||+||+..   ...    . ....  
T Consensus       738 ~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~-----~--~i~i~~g~glTE~~~---~~~----~-~~~~--  800 (1452)
T PTZ00297        738 RDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLL-----E--HISVCYVPCLREVFF---LPS----E-GVFC--  800 (1452)
T ss_pred             CCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHh-----C--CceEEEecceEEeee---ecC----C-CCcc--
Confidence            00         00      02444777763  4443332     2  577888999999531   111    1 1222  


Q ss_pred             cccccCCCceEEEEeC-CCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecC
Q 039837          361 SVGFILPNLEVKFINP-ETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIK  439 (544)
Q Consensus       361 ~~G~~~~~~~~~i~d~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~  439 (544)
                      ..|.|+|+++++|.+. +.+.   .+..|||+++       |+++|+.|.+.+  ++|+         +||.|++.||++
T Consensus       801 ~~G~PlpgvEvKI~~~~E~~~---~~~~GEIlvr-------~~kdpe~T~e~~--~gW~---------~dG~L~IidRkK  859 (1452)
T PTZ00297        801 VDGTPAPSLQVDLEPFDEPSD---GAGIGQLVLA-------KKGEPRRTLPIA--AQWK---------RDRTLRLLGPPL  859 (1452)
T ss_pred             cCCeecCceEEEEcccccccC---CCCCCeEEEE-------ECCChHHHHHhh--CcCc---------cCCeEEEEeccc
Confidence            2399999999999873 3222   1346999995       458899888743  4554         699999999999


Q ss_pred             Cceee-cceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCC-------------------CCHHHH-
Q 039837          440 ELIKY-KGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK-------------------ESEDDI-  498 (544)
Q Consensus       440 d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-------------------~~~~~l-  498 (544)
                      |+||. +|++|.|..||+.+.++|.|.+++|++.+.+    .++|+|++....-                   .+..++ 
T Consensus       860 dlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~  935 (1452)
T PTZ00297        860 GILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----PIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELV  935 (1452)
T ss_pred             cceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----ceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHH
Confidence            99998 8999999999999999999999999987654    3788888763210                   022222 


Q ss_pred             -------HHHH---H--hcccCCCceeEEEEe-ecC-----CCCCCcccchHHHHHHHHHhhhC
Q 039837          499 -------MDFV---A--SNVATYKKVRVLHFV-DGI-----PKSHSGKIMRRILKDKMLEKMRK  544 (544)
Q Consensus       499 -------~~~l---~--~~l~~~~~p~~~~~~-~~~-----P~t~~GKi~r~~l~~~~~~~~~~  544 (544)
                             .+.+   .  +.+..+.++..++++ ++|     -+|++.|++|+.+.+.|+++|++
T Consensus       936 ~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~  999 (1452)
T PTZ00297        936 AYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIER  999 (1452)
T ss_pred             HhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHH
Confidence                   2222   1  125567788776665 334     57999999999999999999863

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=9.9e-42  Score=361.39  Aligned_cols=443  Identities=21%  Similarity=0.262  Sum_probs=354.8

Q ss_pred             CCCCcceeeccccccCCcceeeecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHH
Q 039837            2 AMPNSFSVPVPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALR   81 (544)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~   81 (544)
                      .+|...+..+++..++++   ..+.....+.+...++.+.+.+.+...|++.|+.+.  +..+||+++..+++++|..|.
T Consensus       196 ~~~~~~~~~l~ll~~~e~---~~~~~~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~~--~~~lty~el~~~a~~la~~l~  270 (642)
T COG1020         196 DAPRTSLSALPLLLPSER---EVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRG--GQQLTYAELDARANRLARLLI  270 (642)
T ss_pred             hCcccCcccCCCCCHHHH---hhccccccCCCccchHHHHHHHHHHhCCCceeEecC--CCcccHHHHHHHHHHHHHHHH
Confidence            355666777788877777   112244555555689999999999999999999987  789999999999999999999


Q ss_pred             HcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecc
Q 039837           82 SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGE  161 (544)
Q Consensus        82 ~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~  161 (544)
                      +.|++++++|+++.+.+.++++.++|++++|+.++|+++.++.+++..+++.++++.+++.............  +.++.
T Consensus       271 ~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  348 (642)
T COG1020         271 SLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG--LALDD  348 (642)
T ss_pred             HcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc--ccccc
Confidence            9999999999999999999999999999999999999999999999999999999999998443222111111  11111


Q ss_pred             cccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHH
Q 039837          162 ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGI  241 (544)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~  241 (544)
                      .... .......   .........++..+|||+||.||||..+|+++.+...+....+  .....+.++...++.+..+.
T Consensus       349 ~~~~-~~~~~~~---~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~--~~~~~d~~l~~~s~~fD~~~  422 (642)
T COG1020         349 ALSE-IPDTDPI---PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF--GLDADDRVLALASLSFDASV  422 (642)
T ss_pred             cccc-CCccCcc---cccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc--CCCcccEEeecCCcccchhH
Confidence            1100 0000000   0111223344778999999999999999999999888777776  78888999999998777665


Q ss_pred             HHHHHhhHhccceEEEcCc---cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhH
Q 039837          242 TGICCATLRNKGKVVMMNR---FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDL  318 (544)
Q Consensus       242 ~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~  318 (544)
                       ..++.++..|+++++.+.   .++..+.+.+.++++|++..+|.++..++..............+|.+++||+.++.++
T Consensus       423 -~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~  501 (642)
T COG1020         423 -FEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLAL  501 (642)
T ss_pred             -HHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHH
Confidence             788999999999999874   5788999999999999999999999999876322221112212344999999999999


Q ss_pred             HHHHHhhcC-CCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccc
Q 039837          319 LSSFEKKFP-GVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCV  397 (544)
Q Consensus       319 ~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~  397 (544)
                      ..++....+ ...+.|.||+||+.............  .. ..++|+|+++..++|.| +.+++++.|..||+++.|.++
T Consensus       502 ~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~--~~-~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~  577 (642)
T COG1020         502 VQRLLQLAALARRLLNLYGPTEATLDAPSFPISAEL--ES-RVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGL  577 (642)
T ss_pred             HHHHHHhccccceEeeccCccHHhhheeeEEccccc--CC-CCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcch
Confidence            999988764 57899999999965544433221111  11 56899999999999999 789999999999999999999


Q ss_pred             cccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCC
Q 039837          398 MQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHP  462 (544)
Q Consensus       398 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~  462 (544)
                      .+||+++|+.|...|..+.+|+|||++++..+|.+.++||.|+++|++|.++.+.+||..+.++|
T Consensus       578 a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         578 ALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             hhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence            99999999999999855458999999999999999999999999999999999999999998875

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=3.3e-38  Score=307.63  Aligned_cols=288  Identities=19%  Similarity=0.189  Sum_probs=230.3

Q ss_pred             CCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHH
Q 039837          185 SNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELR  264 (544)
Q Consensus       185 ~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~  264 (544)
                      .....+||||||.||||++||+++.+.+......+.......+++++.+|++|.+|+...++.++..|+++++...+++.
T Consensus        97 ~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~~~  176 (386)
T TIGR02372        97 ARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAPAS  176 (386)
T ss_pred             ceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCChH
Confidence            44678899999999999999999998887776665222234468999999999999877788899999999998888888


Q ss_pred             HHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccc
Q 039837          265 AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCIT  344 (544)
Q Consensus       265 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~  344 (544)
                      .+++.++.+  |++.++|+++..|.+..    ..+++++   +++||+++++++++.+.+.. ...+++.||+||++++.
T Consensus       177 ~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr---~i~gGa~l~~~l~~~~~~~g-~~~v~~~YG~TEt~~i~  246 (386)
T TIGR02372       177 GIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVV---GVSSGAPSTAATWRCLLAAG-LARLLEVYGATETGGIG  246 (386)
T ss_pred             HHHHhhccC--CEEEECcHHHHHHHhhC----cCCCcce---eEecCCCCCHHHHHHHHHhc-ccchhheeccccccccc
Confidence            888877643  88999999999997643    2345544   36789999999999998852 34699999999998755


Q ss_pred             cccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceE
Q 039837          345 LTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIG  424 (544)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~  424 (544)
                      +...          ....|.++|++++.+ +  ++.        +   .|                   ...|++|||++
T Consensus       247 ~~~~----------~~~~~~~~p~~~~~~-~--~~~--------~---~g-------------------~~~~~~tgD~g  283 (386)
T TIGR02372       247 LREA----------PDDPFRLLPDLACFA-D--TLS--------S---AG-------------------LARRLDLQDRL  283 (386)
T ss_pred             cccC----------CCCCcccCCCccccC-C--Ccc--------C---CC-------------------ccceeecCceE
Confidence            4321          123467777776543 1  111        0   01                   12368999999


Q ss_pred             EEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCC--HHHHHHHH
Q 039837          425 YIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES--EDDIMDFV  502 (544)
Q Consensus       425 ~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~l  502 (544)
                      +++++|++++.||.||+||++|++|+|.+||++|.++|+|.+++|..     .++.+.+++++.++...+  .+++.+++
T Consensus       284 ~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~~~~~l~~~~  358 (386)
T TIGR02372       284 AWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAELEIELRATA  358 (386)
T ss_pred             EEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998863     356788998887643332  46888999


Q ss_pred             HhcccCCCceeEEEEeecCCCCCCcccc
Q 039837          503 ASNVATYKKVRVLHFVDGIPKSHSGKIM  530 (544)
Q Consensus       503 ~~~l~~~~~p~~~~~~~~~P~t~~GKi~  530 (544)
                      +++++.+++|..+.++++||+|++||++
T Consensus       359 ~~~L~~~~~P~~i~~~~~lP~t~~GKi~  386 (386)
T TIGR02372       359 ARHLPAPARPDRFRFGTELPRTGAGKLA  386 (386)
T ss_pred             HHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence            9999999999999999999999999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=5.2e-36  Score=300.27  Aligned_cols=317  Identities=17%  Similarity=0.189  Sum_probs=231.7

Q ss_pred             CCCCCCCCcCcceeeccHHHHHHHHHhhcccc-CCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHH
Q 039837          188 DDVKQTDLWISKGVMLTHRNLVANLCSTLFSV-VPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAF  266 (544)
Q Consensus       188 ~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~  266 (544)
                      ..+||||||.||++.+||.++..........+ ..+...+|+++...++....+.....+.++..|++++..+..++..+
T Consensus        80 ~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  159 (422)
T TIGR02155        80 IHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQTEKQ  159 (422)
T ss_pred             EEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCCHHHH
Confidence            45899999999999999999876543322211 11667788888776654433433445667888999988877778999


Q ss_pred             HHHHHHcCceeeecchHHHHHHhcCCCCCccCc--cccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccc
Q 039837          267 LDALITHEVTFAPIVPPIILSLVKDPIVDEFDL--SKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCIT  344 (544)
Q Consensus       267 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~--~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~  344 (544)
                      ++.|+++++|++.++|+++..|++.......+.  .+++.  ++++||++++++.+.+.+.| ++++++.||+||+++..
T Consensus       160 ~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~--i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~tE~~~~~  236 (422)
T TIGR02155       160 VQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQV--GIFGAEPWTNAMRKEIEARL-GMKATDIYGLSEVIGPG  236 (422)
T ss_pred             HHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEE--EEEeCCcCCHHHHHHHHHHh-CCceEecccchhhcCCc
Confidence            999999999999999999999886543332222  34455  99999999999999999999 89999999999985321


Q ss_pred             cccCCCCCCCCCCCCCcccccC--CCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCc
Q 039837          345 LTYGDPANPSAGSKKNSVGFIL--PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGD  422 (544)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~G~~~--~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD  422 (544)
                      ....+.     .   ...|.++  +++.++|+|++++.++++|+.|||++++..            ...+ +.+||+|||
T Consensus       237 ~~~~~~-----~---~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~~------------~~~~-p~~ry~TGD  295 (422)
T TIGR02155       237 VAMECV-----E---TQDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTLT------------KEAL-PVIRYRTRD  295 (422)
T ss_pred             eeeccc-----c---cCCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecCC------------cccc-ceeeEEcCc
Confidence            111110     0   0122233  457778999778999999999999999732            2233 567999999


Q ss_pred             eEEEcCC-C-----cEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCC-C-
Q 039837          423 IGYIDDD-G-----DIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKE-S-  494 (544)
Q Consensus       423 ~~~~~~~-g-----~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~-  494 (544)
                      +++++++ |     .+++.||.+|+|+++|.+|+|.+||.+|.++|+|...+.+........+.+.+.++..++... . 
T Consensus       296 l~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~  375 (422)
T TIGR02155       296 LTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYTLRL  375 (422)
T ss_pred             EEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccc
Confidence            9999775 4     468999999999999999999999999999999985444455444444567776666543211 1 


Q ss_pred             -------HHHHHHHHHhcccCCCceeEEEEe--ecCCCCCCcccchH
Q 039837          495 -------EDDIMDFVASNVATYKKVRVLHFV--DGIPKSHSGKIMRR  532 (544)
Q Consensus       495 -------~~~l~~~l~~~l~~~~~p~~~~~~--~~~P~t~~GKi~r~  532 (544)
                             .++|.+.+++.+..+.   .+.++  ++||+|. ||++|.
T Consensus       376 ~~~~~~~~~~i~~~~~~~~~~~~---~v~~~~~~~lp~~~-GK~~~~  418 (422)
T TIGR02155       376 HEQASLLAGEIQHTIKQEVGVSM---DVHLVEPGSLPRSE-GKARRV  418 (422)
T ss_pred             hHHHHHHHHHHHHHHHhccCcEE---EEEEECCCCccCCC-CCceEE
Confidence                   3556677777665553   24444  6999988 999874

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=100.00  E-value=9.8e-33  Score=276.87  Aligned_cols=496  Identities=17%  Similarity=0.213  Sum_probs=347.6

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEc----cCCceeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCccHHHHHHHHHH
Q 039837           36 VTLPDFVLQDAELYADKVAFVEA----VSGKAYTYAQVARDTRGFAKALRSL-GLRKGQVVIVVLPNVAEYGIVALGIMA  110 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~----~~~~~~Ty~el~~~~~~la~~L~~~-Gi~~gd~V~i~~~n~~~~~~~~lA~~~  110 (544)
                      .++.+.|++.++.+|+++|+..-    ....++||++|.+++.+++.+|+.. -+++||.|++++++++|++++++||+.
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly  849 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY  849 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence            68999999999999999999753    2237899999999999999999976 589999999999999999999999999


Q ss_pred             hcCeeecCCCCC------CHHHHHHHHHhcCceEEEeccchHHHhhcCC---------CcEEEecccccccccCHHHHHH
Q 039837          111 AGGVFSGANPTA------HASELKKQVDAADAKLIVSYAPIYEKVKGLG---------LPIIVLGEERIESAINWSELIE  175 (544)
Q Consensus       111 ~G~~~v~l~~~~------~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  175 (544)
                      +|.+++|+.|..      +-..+..+++.+++.+|+++......+....         .+.+...++....+.....-..
T Consensus       850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~~k~~~~~~  929 (1363)
T KOG3628|consen  850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETIRKRKKNIK  929 (1363)
T ss_pred             cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhhhhhhhhhh
Confidence            999999999853      3446888999999999999988766554322         1111111111111000000000


Q ss_pred             hhhhc------CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhH
Q 039837          176 AADKA------GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATL  249 (544)
Q Consensus       176 ~~~~~------~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l  249 (544)
                      .....      .....+...+.-.+.|.--++.+||+++++.+.......  .+.+..-++...+.+...|+...++..+
T Consensus       930 k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~--~l~~~rpl~~~~~~~sGlgf~~wcLlgV 1007 (1363)
T KOG3628|consen  930 KLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC--QLYKSRPLLGCSSPYSGLGFNHWCLLGV 1007 (1363)
T ss_pred             ccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH--ccccCCceEEEecCccchhHHHHHHHHH
Confidence            00000      001111222333344777899999999999999988888  8888888999999999999999999999


Q ss_pred             hccceEEEcCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccc----cccEEEecCCCCHhHHHH
Q 039837          250 RNKGKVVMMNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQ----LRAVMTAAAPLAPDLLSS  321 (544)
Q Consensus       250 ~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~----~~~v~~~G~~~~~~~~~~  321 (544)
                      ++|...++.++    .++..|++.++++++.-++.+-..+..+.+.......+++...    ..+++..-++....+...
T Consensus      1008 ysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~RPr~ali~s 1087 (1363)
T KOG3628|consen 1008 YSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEERPRIALIAS 1087 (1363)
T ss_pred             HcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCccHHHHHHH
Confidence            99999888775    3688899999999998888888877777654332222222111    022666677777788888


Q ss_pred             HHhhcCC-----CeEEecccCccccccccccCCCCCC-----------------C-----CCCCCCcccccCCCceEEEE
Q 039837          322 FEKKFPG-----VQVQEAYGLTEHSCITLTYGDPANP-----------------S-----AGSKKNSVGFILPNLEVKFI  374 (544)
Q Consensus       322 ~~~~~~~-----~~i~~~yG~tE~~~~~~~~~~~~~~-----------------~-----~~~~~~~~G~~~~~~~~~i~  374 (544)
                      +.+.|..     -.+.-.|+..=--.++....-...+                 .     ........|...+++++.|+
T Consensus      1088 f~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Iv 1167 (1363)
T KOG3628|consen 1088 FKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIV 1167 (1363)
T ss_pred             HHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEe
Confidence            8887621     1122233332221111110000000                 0     01111134788899999999


Q ss_pred             eCCCCCcCCCCCCceEEEecccccccccCChhhh-hccc---------CCCCeeecCceEEEcC------CC----cEEE
Q 039837          375 NPETGKSLPSNTPGELCVRSQCVMQGYYNNEEET-ARTI---------DKNGWLHTGDIGYIDD------DG----DIFI  434 (544)
Q Consensus       375 d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~-~~~~---------~~~~~~~TGD~~~~~~------~g----~~~~  434 (544)
                      +||+..++.+|+.||||+.|.+-+.+|+...+.. ...|         ...+|-||||+|++..      +|    -+|+
T Consensus      1168 nPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyV 1247 (1363)
T KOG3628|consen 1168 NPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYV 1247 (1363)
T ss_pred             CCccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEE
Confidence            9999999999999999999999888877532111 1111         3557999999999842      22    3999


Q ss_pred             EeecCCceeecceeeChHHHHHHHh-cCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH-HhcccCCCce
Q 039837          435 VDRIKELIKYKGFQVAPAELEAILL-THPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV-ASNVATYKKV  512 (544)
Q Consensus       435 ~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l-~~~l~~~~~p  512 (544)
                      +|-.++.+.++|.+.+|.+||..+. .||.|..|+||...     ..++.++++..  +....+|.-.+ ...|..+.+.
T Consensus      1248 lG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~-----glvVvviE~~g--q~~~~~LvPlIv~~vL~eH~iI 1320 (1363)
T KOG3628|consen 1248 LGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQAT-----GLVVVVIECHG--QQELADLVPLIVNVVLEEHYII 1320 (1363)
T ss_pred             eecccceeeecCcccCcchHHHHHHHhcccccceeeEeeC-----CeEEEEEEecC--chhHhhhhHHHHHHHHhhcceE
Confidence            9999999999999999999999884 58999999999543     35666666554  22333343333 3446665555


Q ss_pred             -eEEEEe--ecCCCCCCcccchHHHHHHHHH
Q 039837          513 -RVLHFV--DGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       513 -~~~~~~--~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                       ..+.++  ..+|+++.|..+|..+++.|..
T Consensus      1321 ~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~ 1351 (1363)
T KOG3628|consen 1321 LDVVAFVDKGVFPRNSRGEKQRAHILDSWLA 1351 (1363)
T ss_pred             EEEEEEecCCccccCCchhhHHHHHHHHHHh
Confidence             455555  5699999999999999998754

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.8e-32  Score=284.11  Aligned_cols=516  Identities=18%  Similarity=0.163  Sum_probs=333.2

Q ss_pred             eccccccCCcceeeecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEcc----CC--ceeeHHHHHHHHHHHHHHHHHc
Q 039837           10 PVPLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAV----SG--KAYTYAQVARDTRGFAKALRSL   83 (544)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~----~~--~~~Ty~el~~~~~~la~~L~~~   83 (544)
                      .+++.+......+.+...........-++...+.+.+...|...+..+..    .+  ..+||.+....++.+++.|...
T Consensus        10 ~~~~~~~~~~d~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~   89 (1032)
T KOG1178|consen   10 SLSLITYRQEDSLPDETKQIGFEQFMGTLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSL   89 (1032)
T ss_pred             cceeeccccccccCChhhhhhhhhhhcchhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhc
Confidence            33333333333444444433334444577788889999999888875421    11  5799999999999999999999


Q ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCC----HHHHHHHHHhcC-ceEEEeccchHHHhhcCC-CcEE
Q 039837           84 GLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAH----ASELKKQVDAAD-AKLIVSYAPIYEKVKGLG-LPII  157 (544)
Q Consensus        84 Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~----~~~l~~~l~~~~-~~~ii~~~~~~~~~~~~~-~~~~  157 (544)
                      |..+|+.|++++..+.++++..++++++|..+++++|+++    ++.+..+..... ...-+......-.+.... .+..
T Consensus        90 ~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~~~~~~~~~~  169 (1032)
T KOG1178|consen   90 GSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDILLNSLFPKL  169 (1032)
T ss_pred             ccccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHHHhhcccccc
Confidence            9999999999999999999999999999999999999999    332222211111 101111111111110000 0000


Q ss_pred             EecccccccccCHHHHHHhhhhc-----CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEe
Q 039837          158 VLGEERIESAINWSELIEAADKA-----GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGL  232 (544)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~  232 (544)
                      .++..    ...+..+.......     .....+...+|||++|.||+|..+|..+.+...|....+  ....++.+-..
T Consensus       170 sv~~~----~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f--~~t~s~~~~~~  243 (1032)
T KOG1178|consen  170 SVETI----ADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF--PPTGSDRFTFK  243 (1032)
T ss_pred             chhhc----cchhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC--CcCccchhhhh
Confidence            00000    00111111110000     111122456899999999999999999999999999887  56666654111


Q ss_pred             cchhHHHHHHHHHHhhHhccceEEEcCcc---CHHHHHHHHHHcCceeeecchHHHHHHhcCCCCC----------c---
Q 039837          233 IPFFHIYGITGICCATLRNKGKVVMMNRF---ELRAFLDALITHEVTFAPIVPPIILSLVKDPIVD----------E---  296 (544)
Q Consensus       233 ~p~~~~~g~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------~---  296 (544)
                      ...+........+...+..|..+..+...   .+.++.+.++++.++..+.+|++.+.++......          .   
T Consensus       244 ~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~  323 (1032)
T KOG1178|consen  244 TSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLL  323 (1032)
T ss_pred             heeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhccccc
Confidence            12212112213344455556656555432   3789999999999999999999988876644321          0   


Q ss_pred             cCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCC-------Cc
Q 039837          297 FDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILP-------NL  369 (544)
Q Consensus       297 ~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~-------~~  369 (544)
                      ...+.+++  ...+|++....+...+...+...-...-|++++..+........... .......++.+..       ..
T Consensus       324 ~~~~~Lkl--~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~-~ll~~~~v~~~p~~~~~~~~~~  400 (1032)
T KOG1178|consen  324 TKRSCLKL--VVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSK-VLLTNENVYSVPKFDSIIGSLT  400 (1032)
T ss_pred             ccchhhee--eeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCccc-ceecceeEEeccchhhccCCCc
Confidence            11224556  99999999999998777766333334448888876655443211111 0000001111111       11


Q ss_pred             eEEEEeCCCCCcCCCCCCceE----EEecccccccccCChhhhhccc-----CCCCeeecCceEEEcCCCcEEEEeecCC
Q 039837          370 EVKFINPETGKSLPSNTPGEL----CVRSQCVMQGYYNNEEETARTI-----DKNGWLHTGDIGYIDDDGDIFIVDRIKE  440 (544)
Q Consensus       370 ~~~i~d~~~~~~~~~g~~Gel----~v~~~~~~~gy~~~~~~~~~~~-----~~~~~~~TGD~~~~~~~g~~~~~GR~~d  440 (544)
                      ...+.. ..+.+.+.++.+..    +-.+.....| +..++.....+     ..+.+|+|||+|+..++|.+.+.||.|+
T Consensus       401 ~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~  478 (1032)
T KOG1178|consen  401 VLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADR  478 (1032)
T ss_pred             ceeeee-ccCcccCCcccceeecccccccceeecc-ccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccc
Confidence            222222 22333332222222    2222333444 33344332222     2345799999999989999999999999


Q ss_pred             ceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCC-CHHHHHHHHHhcccCCCceeEEEEee
Q 039837          441 LIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKE-SEDDIMDFVASNVATYKKVRVLHFVD  519 (544)
Q Consensus       441 ~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~l~~~l~~~~~p~~~~~~~  519 (544)
                      +||++|.++...+|+.++..+|.|.++++....+...++.+.+|+++...... ...++++++++.|+.|++|..++.++
T Consensus       479 qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~~~~~i~~~l~~~La~y~vPs~~V~l~  558 (1032)
T KOG1178|consen  479 QIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSVLIRDIRNYLKKELASYMLPSLVVPLA  558 (1032)
T ss_pred             eEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCchhHHHHHHhhcccccceecceEEEEhh
Confidence            99999999999999999999999999999999888888999999987655433 34779999999999999999999999


Q ss_pred             cCCCCCCcccchHHHHH
Q 039837          520 GIPKSHSGKIMRRILKD  536 (544)
Q Consensus       520 ~~P~t~~GKi~r~~l~~  536 (544)
                      ++|+|++||||+++|..
T Consensus       559 ~vPl~~~GKvDkkaL~~  575 (1032)
T KOG1178|consen  559 KVPLNPNGKVDKKALLE  575 (1032)
T ss_pred             hCCcCCCCCcChhhhhh
Confidence            99999999999999998

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.97  E-value=7.6e-29  Score=248.33  Aligned_cols=320  Identities=13%  Similarity=0.066  Sum_probs=216.4

Q ss_pred             CCCCCCCCcCcceeeccHHHHHHHHHhhcccc-CCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHH
Q 039837          188 DDVKQTDLWISKGVMLTHRNLVANLCSTLFSV-VPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAF  266 (544)
Q Consensus       188 ~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~  266 (544)
                      ..+||||||.||+|.+||.++..........+ ..++.++|+++...++.+..+.....+.++..|++++....  ....
T Consensus        91 i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~--~~~~  168 (445)
T TIGR03335        91 IHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK--CTFP  168 (445)
T ss_pred             EEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc--hhHH
Confidence            45699999999999999999877654443322 12677889999988887766654555667888888765443  3456


Q ss_pred             HHHHHHcCceeeecchHHHHHHhcCCCCCccC--ccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccc
Q 039837          267 LDALITHEVTFAPIVPPIILSLVKDPIVDEFD--LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCIT  344 (544)
Q Consensus       267 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~  344 (544)
                      ++.|+++++|.+.++|+.+..|.+.....+.+  ..+++.  +++|||++++++.+.+.+.| ++++++.||+||++. +
T Consensus       169 ~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~--ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~TE~~~-~  244 (445)
T TIGR03335       169 IRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRR--LVVGGESFADESRNYVEELW-GCEVYNTYGSTEGTM-C  244 (445)
T ss_pred             HHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceE--EEEcCCCCCHHHHHHHHHHh-CCcEEecCChhhhhh-e
Confidence            88999999999999999988877643322222  234445  99999999999999999988 899999999999863 2


Q ss_pred             cccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceE
Q 039837          345 LTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIG  424 (544)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~  424 (544)
                      ..+.         .......+.+.+.++|+|++++.++++|+.|||++++-....        ++..+ +--.|+|||++
T Consensus       245 ~~c~---------~~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~--------~r~~~-PliRYrtgD~~  306 (445)
T TIGR03335       245 GECQ---------AVAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPG--------ERCGS-LLINYDTEDTT  306 (445)
T ss_pred             EEec---------CCCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCC--------ccCCc-eEEEeecCceE
Confidence            2111         011122334568899999888889999999999999643100        00000 22359999999


Q ss_pred             EEcC-C----Cc----EEEEeecCCceeecceeeChHHHHHHHhcC---CCcc-ceEEEeecCCCCCceeEEEEEeCCCC
Q 039837          425 YIDD-D----GD----IFIVDRIKELIKYKGFQVAPAELEAILLTH---PSVE-DAAVVSLPDEEAGEIPAACVVMNPNA  491 (544)
Q Consensus       425 ~~~~-~----g~----~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~---~~v~-~~~v~~~~~~~~~~~~~~~v~~~~~~  491 (544)
                      ++.. +    |+    +...||.||+++++|.+++|.+||++|.++   +++. +..++........+.+.+.++..+..
T Consensus       307 ~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~  386 (445)
T TIGR03335       307 VVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEEGEITLRVSLECEDKD  386 (445)
T ss_pred             EEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCCCCceEEEEEEecCcc
Confidence            9732 2    21    445699999999999999999999999994   5554 34444333222223455555555543


Q ss_pred             CCCHHHHHHHHHhc----cc-------CCCceeEEEEe--ecCCCCC-Ccccch
Q 039837          492 KESEDDIMDFVASN----VA-------TYKKVRVLHFV--DGIPKSH-SGKIMR  531 (544)
Q Consensus       492 ~~~~~~l~~~l~~~----l~-------~~~~p~~~~~~--~~~P~t~-~GKi~r  531 (544)
                      ..+.+++.+.+.+.    ++       ...+...+.++  ..+|++. .||..|
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r  440 (445)
T TIGR03335       387 NCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR  440 (445)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence            33344444444443    22       22222334444  6799983 588776

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.96  E-value=1.8e-27  Score=225.11  Aligned_cols=320  Identities=19%  Similarity=0.225  Sum_probs=235.5

Q ss_pred             CCCCCCCCcCcceeeccHHHHHHHHHhhccccCC-cccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHH
Q 039837          188 DDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVP-EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAF  266 (544)
Q Consensus       188 ~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~  266 (544)
                      +-.||||||.|+-+.+|+..+......+...+.. +...+|++..+.-+....|-......+-..|++++...+.+....
T Consensus        95 ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~~~~  174 (438)
T COG1541          95 IHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNTERQ  174 (438)
T ss_pred             EEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccHHHH
Confidence            4569999999999999999988777666655543 667778776654432222222445666668888888777788999


Q ss_pred             HHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccc
Q 039837          267 LDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLT  346 (544)
Q Consensus       267 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~  346 (544)
                      +++++++++|++.++|+++..|.+.....+.+...++++.+++|+|++++++.+.+.+.| |+..++.||+||..+....
T Consensus       175 ~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYGltE~~g~g~~  253 (438)
T COG1541         175 LELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGLTEGFGPGAG  253 (438)
T ss_pred             HHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeeccccccccCCccc
Confidence            999999999999999999999998777665444445566699999999999999999999 9999999999999766422


Q ss_pred             cCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEE
Q 039837          347 YGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYI  426 (544)
Q Consensus       347 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~  426 (544)
                              ++..........+...++|+||++|+.+++|+.|||+++.-.            +..+ +--.|+|||++.+
T Consensus       254 --------eC~~~~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~------------~~~~-PlIRYrtgDit~i  312 (438)
T COG1541         254 --------ECTERNGLHIWEDHFIFEIVDPETGEQLPDGERGELVITTLT------------KEGM-PLIRYRTGDITVI  312 (438)
T ss_pred             --------ccccccCCCcchhhceeeeecCCcCccCCCCCeeEEEEEecc------------ccCc-ceEEEEcCCeeEe
Confidence                    122222344556788899999999999999999999998522            1111 3336999999999


Q ss_pred             cCC----Cc-----EEEEeecCCceeecceeeChHHHHHHHhcCCCcc-ceEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 039837          427 DDD----GD-----IFIVDRIKELIKYKGFQVAPAELEAILLTHPSVE-DAAVVSLPDEEAGEIPAACVVMNPNAKESED  496 (544)
Q Consensus       427 ~~~----g~-----~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~-~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  496 (544)
                      .++    |+     ..+.||+||++++.|.+|+|.+||++|.+.+.+. +..++... ++..+.+.+-+++.++......
T Consensus       313 ~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~L~V~vE~~~~~~~~~~  391 (438)
T COG1541         313 LSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDELTVRVELENEAEELED  391 (438)
T ss_pred             cccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCceEEEEEEecCcccchHH
Confidence            764    32     5689999999999999999999999999999999 66666655 5555677777777664222222


Q ss_pred             --HHHHHHHhccc-CCCcee--EEEEeecCCCCCCcccch
Q 039837          497 --DIMDFVASNVA-TYKKVR--VLHFVDGIPKSHSGKIMR  531 (544)
Q Consensus       497 --~l~~~l~~~l~-~~~~p~--~~~~~~~~P~t~~GKi~r  531 (544)
                        .+.+.+.+.+. ......  .++...++|++.. |..|
T Consensus       392 ~~~~~~~l~~~~~~~~~~~~~v~~v~~g~l~r~~~-K~kr  430 (438)
T COG1541         392 ERRLAKKLIKNIKSELGVRVEVELVEPGELPRTEG-KAKR  430 (438)
T ss_pred             HHHHHHHHHHHHHhhcCCceEEEEEeccceecccC-ceeE
Confidence              22234433322 222222  3444478999984 6544

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.91  E-value=4.4e-23  Score=186.32  Aligned_cols=205  Identities=15%  Similarity=0.070  Sum_probs=156.3

Q ss_pred             HHhhhhhcCCceEEEEc-c---CCceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeee
Q 039837           42 VLQDAELYADKVAFVEA-V---SGKAYTYAQVARDTRGFAKALRS-LGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFS  116 (544)
Q Consensus        42 l~~~a~~~p~~~a~~~~-~---~~~~~Ty~el~~~~~~la~~L~~-~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v  116 (544)
                      |...++.+|+++|++.. +   ++.++||+||.++++++|++|++ .|+++||+|+++++|+++++++++||+++|++++
T Consensus         2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v   81 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV   81 (227)
T ss_pred             hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence            46778889999999743 1   23479999999999999999998 7999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEec-----c----cccccccCHHHHHHhhhh-------c
Q 039837          117 GANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLG-----E----ERIESAINWSELIEAADK-------A  180 (544)
Q Consensus       117 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~-------~  180 (544)
                      |++             .+++++++++++....+... ...+.+.     .    ........+.........       .
T Consensus        82 p~n-------------~s~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (227)
T TIGR03089        82 LAG-------------DPDADVVVTGPDRLAAAAGS-GEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGDQFAPYEPP  147 (227)
T ss_pred             eCC-------------CCCCCEEEeCcchhhhcccC-CceEEEeccccccCCCCCCCCcccchhhhhhccCCCCCCCCCC
Confidence            995             77899999988877765422 2233221     0    011122344443332111       1


Q ss_pred             CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc
Q 039837          181 GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR  260 (544)
Q Consensus       181 ~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  260 (544)
                      .........||||+         +|.++....    ...  ++.++|+++ .+|++|.+|+...++.++..|+++++.++
T Consensus       148 ~~~D~a~l~yTsg~---------~~~~~~~~~----~~~--~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~r  211 (227)
T TIGR03089       148 DATAPALVAGGGEW---------TGAELVAAA----RAA--GLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTH  211 (227)
T ss_pred             CCCcceeeeccccc---------cHHHHHHHH----hhc--CCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecC
Confidence            11233456777643         666665554    223  678899999 99999999998889999999999999999


Q ss_pred             cCHHHHHHHHHHcCce
Q 039837          261 FELRAFLDALITHEVT  276 (544)
Q Consensus       261 ~~~~~~~~~i~~~~~t  276 (544)
                      +++..+++.|+++|+|
T Consensus       212 Fd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       212 PDPARLDQIAETERVT  227 (227)
T ss_pred             CCHHHHHHHHHhhcCC
Confidence            9999999999999986

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.88  E-value=3.8e-21  Score=194.28  Aligned_cols=501  Identities=15%  Similarity=0.168  Sum_probs=331.3

Q ss_pred             CcceeeecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccC-C--ceeeHHHHHHHHHHHHH-HHHHcCCCCCCEEEE
Q 039837           18 DEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVS-G--KAYTYAQVARDTRGFAK-ALRSLGLRKGQVVIV   93 (544)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~-~--~~~Ty~el~~~~~~la~-~L~~~Gi~~gd~V~i   93 (544)
                      .+.++.++..+.........+..+++..-..++..+|.++.+. |  ..+||..+..++.+.|+ .|.+.|+.++|+|.+
T Consensus        76 ~~~~~~~~~ntsss~~a~~d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL  155 (1363)
T KOG3628|consen   76 ARFPINDPRNTSSSMMALTDIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVL  155 (1363)
T ss_pred             cccccCCCCCCchhhhhhcchHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEE
Confidence            3333333333333444555667777777778888888775321 2  57999999999999999 666779999999999


Q ss_pred             EcCCC--ccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHH
Q 039837           94 VLPNV--AEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWS  171 (544)
Q Consensus        94 ~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (544)
                      +...+  +++++..++|...|.+.+|+.+..+.+++..+++....+++++............            ...++.
T Consensus       156 ~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~------------~~~s~~  223 (1363)
T KOG3628|consen  156 YYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDN------------SPVSLA  223 (1363)
T ss_pred             EEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhcc------------CcccHH
Confidence            98866  7999999999999999999999999999999999999999999877665544321            011111


Q ss_pred             HHHHh---------------hhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhcccc-----------------
Q 039837          172 ELIEA---------------ADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSV-----------------  219 (544)
Q Consensus       172 ~~~~~---------------~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~-----------------  219 (544)
                      +.+..               ..+.....-..+.++.+.+|.--|++.+|+ ++.+.+.+....                 
T Consensus       224 k~v~~w~t~~~k~~~~~~k~~~P~~~~~~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~  302 (1363)
T KOG3628|consen  224 KAVAWWKTNDFKGNYTKDKIKKPRMQLPYGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHA  302 (1363)
T ss_pred             HHHHhhhcccccceeehhhccCCceeeeeEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhh
Confidence            11110               000001112345667778888888888887 544432221111                 


Q ss_pred             -CCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc---cCHHHHHHHHHHcCceeeecchHHHHHHhcC----
Q 039837          220 -VPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR---FELRAFLDALITHEVTFAPIVPPIILSLVKD----  291 (544)
Q Consensus       220 -~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----  291 (544)
                       .......+.++.........|+++.++.++++|.+.+.+++   ..|..+.+.+.++|++++..-...+......    
T Consensus       303 ~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~  382 (1363)
T KOG3628|consen  303 HVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQED  382 (1363)
T ss_pred             hccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCC
Confidence             01345566777777778888999999999999999999886   6788899999999999998765555443221    


Q ss_pred             C-------CCCccCccccccccEEEecCCCCHhHHHHHHhhc----C-----------------CCeEEecccCcccccc
Q 039837          292 P-------IVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKF----P-----------------GVQVQEAYGLTEHSCI  343 (544)
Q Consensus       292 ~-------~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~----~-----------------~~~i~~~yG~tE~~~~  343 (544)
                      +       +....++++++.  +++....++.+...-....|    .                 |...+..=+++|.+..
T Consensus       383 p~a~~s~~k~~t~d~sslk~--C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~  460 (1363)
T KOG3628|consen  383 PKATLSFKKYKTPDLSSLKG--CMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTV  460 (1363)
T ss_pred             cccccchhhccCCCccceee--eEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcc
Confidence            1       112346778777  88888888877655444332    0                 1112222334555544


Q ss_pred             ccccCCC-----CC--------------------CCCCCCCCcccccCCC-ceEEEEeCCCCCcCCCCCCceEEEecccc
Q 039837          344 TLTYGDP-----AN--------------------PSAGSKKNSVGFILPN-LEVKFINPETGKSLPSNTPGELCVRSQCV  397 (544)
Q Consensus       344 ~~~~~~~-----~~--------------------~~~~~~~~~~G~~~~~-~~~~i~d~~~~~~~~~g~~Gel~v~~~~~  397 (544)
                      ....+..     .+                    .-.......+|...+| +.+.++++++...|.++++|||||.++++
T Consensus       461 ~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~  540 (1363)
T KOG3628|consen  461 SIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSL  540 (1363)
T ss_pred             cccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCc
Confidence            3322210     00                    0011122234554444 56777888889999999999999999999


Q ss_pred             cccccCChhhhhccc------------CCCCeeecCceEEEcCCCcEEEEeecCCcee-ecceeeChHH----------H
Q 039837          398 MQGYYNNEEETARTI------------DKNGWLHTGDIGYIDDDGDIFIVDRIKELIK-YKGFQVAPAE----------L  454 (544)
Q Consensus       398 ~~gy~~~~~~~~~~~------------~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~-~~G~~v~~~~----------i  454 (544)
                      ..+||.-+..|...|            ....|.|||-+|++ .+|.++++|-.+|++. +.|...+..+          |
T Consensus       541 ~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv-~~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~i  619 (1363)
T KOG3628|consen  541 GKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFV-HNGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELI  619 (1363)
T ss_pred             ccceeeccccccceEEeeeccccCCCCccchhhhhcceeee-eCCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHH
Confidence            999999888887766            12247899999999 5666777777777665 4777665544          4


Q ss_pred             HHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCC-CHHHHHHHHHhcccCCCcee----EEEEeecCCCCCCccc
Q 039837          455 EAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKE-SEDDIMDFVASNVATYKKVR----VLHFVDGIPKSHSGKI  529 (544)
Q Consensus       455 E~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~l~~~l~~~~~p~----~~~~~~~~P~t~~GKi  529 (544)
                      +.+.+..+.|-++.+|-      .+..+.+++..|.... +.-+....+.+.+-..+...    .++.-+.+|+|+.|.|
T Consensus       620 ktV~R~v~~VF~~saf~------~E~~~Vv~~esP~a~e~~~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi  693 (1363)
T KOG3628|consen  620 KTVMRGVIAVFDVSAFE------DEHIVVVVLESPDATEENSFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGI  693 (1363)
T ss_pred             HHHHhccceEEEEeeee------cceEEEEEEeCcchhhhhhhhHHHHHHHHHHHHhcccceEEEEeccccCCCcccccc
Confidence            45556678888888884      3455555554444311 11222223333333222222    2344489999999999


Q ss_pred             chHHHHHHHHH
Q 039837          530 MRRILKDKMLE  540 (544)
Q Consensus       530 ~r~~l~~~~~~  540 (544)
                      .-.+.++.|.+
T Consensus       694 ~~~~~k~~F~~  704 (1363)
T KOG3628|consen  694 HNNECKQAFLE  704 (1363)
T ss_pred             ccHHHHHHHHc
Confidence            99999999975

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.87  E-value=1.2e-21  Score=186.89  Aligned_cols=118  Identities=24%  Similarity=0.258  Sum_probs=110.0

Q ss_pred             CCCeeecCceEEE-cCCCcEEEEeecCCceeecc---eeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCC
Q 039837          414 KNGWLHTGDIGYI-DDDGDIFIVDRIKELIKYKG---FQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP  489 (544)
Q Consensus       414 ~~~~~~TGD~~~~-~~~g~~~~~GR~~d~i~~~G---~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  489 (544)
                      .+|||+|||+|++ |++|++++.||.+     +|   ++|+|. ||++|.+||+|.+++|++++++..|+.++|++++..
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~  280 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL  280 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence            6899999999998 7999999999998     78   799999 999999999999999999999999999999998763


Q ss_pred             CCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          490 NAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       490 ~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                        ..+.++++++++++|+. ++|..++++++||+|++||++|++|++.+.+
T Consensus       281 --~~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~  328 (365)
T PRK09188        281 --PADEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMN  328 (365)
T ss_pred             --CCCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhc
Confidence              45778999999999999 9999999999999999999999999997644

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.69  E-value=4.3e-15  Score=145.50  Aligned_cols=240  Identities=13%  Similarity=0.149  Sum_probs=152.0

Q ss_pred             CCCCCCCCcCcceeeccHHHHHHHHHhhcc-ccCCcccCccEEEEe--cchhHHHHHHHHHHhhHhcc-ceEEEcC-ccC
Q 039837          188 DDVKQTDLWISKGVMLTHRNLVANLCSTLF-SVVPEMIGQVTTLGL--IPFFHIYGITGICCATLRNK-GKVVMMN-RFE  262 (544)
Q Consensus       188 ~~~tsgttG~PKgV~~t~~~l~~~~~~~~~-~~~~~~~~~~~~~~~--~p~~~~~g~~~~~~~~l~~G-~~~~~~~-~~~  262 (544)
                      ...||||||.|-.+..+............. ..+.+...++.+..+  .+. +.+.       ++... ..+...+ ..+
T Consensus       104 v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~ly~-------~~~~~~~~~~~~~l~~~  175 (430)
T TIGR02304       104 VGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NLYQ-------SVNNRWISLDFFDLLAP  175 (430)
T ss_pred             EEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hHHH-------HHHhccceeeecCCCcC
Confidence            345999999999999988865433322222 221233443433333  111 2111       11111 1112222 245


Q ss_pred             HHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccc
Q 039837          263 LRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSC  342 (544)
Q Consensus       263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~  342 (544)
                      .+.+++.|++++|+++.+.|+.+..|++.....+..   +..+.++++||.++++..+.+.+.| ++++++.||+|| |.
T Consensus       176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~---~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~  250 (430)
T TIGR02304       176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT---IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GF  250 (430)
T ss_pred             HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC---CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hh
Confidence            788999999999999999999999998865443332   3345599999999999999999999 899999999999 64


Q ss_pred             cccccCCCCCCCCCCCCCcccccCCCceEE--EEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeec
Q 039837          343 ITLTYGDPANPSAGSKKNSVGFILPNLEVK--FINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHT  420 (544)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~--i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~T  420 (544)
                      ++..+.          .+....-...+-++  ++|+ ++.       ++.+|++=.      +      ..+ +--.|+|
T Consensus       251 la~eC~----------~g~lHl~ed~~~vE~~ivD~-~~~-------~~~ViT~L~------n------~~~-PlIRYrt  299 (430)
T TIGR02304       251 LASTCR----------CGTLHLNEDLVHIEKQYLDE-HKR-------FVPIITDFT------R------TTQ-PIVRYRL  299 (430)
T ss_pred             eEEecC----------CCCEEEccccEEEEeeEECC-CCc-------eEEEEecCC------C------ccc-eEEeeeC
Confidence            433221          12222222334444  7774 332       344665421      1      011 2335999


Q ss_pred             CceEEEcCC----Cc----E-EEEeecCCceee---cce--eeChHHHHHHHh-cCCCccceEEEe
Q 039837          421 GDIGYIDDD----GD----I-FIVDRIKELIKY---KGF--QVAPAELEAILL-THPSVEDAAVVS  471 (544)
Q Consensus       421 GD~~~~~~~----g~----~-~~~GR~~d~i~~---~G~--~v~~~~iE~~l~-~~~~v~~~~v~~  471 (544)
                      ||++.+..+    |.    + .+.||.+|++++   +|.  +++|..++.++. ..++|.++.++.
T Consensus       300 GD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q  365 (430)
T TIGR02304       300 NDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQ  365 (430)
T ss_pred             CCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEE
Confidence            999998554    32    3 388999999985   454  459999998854 568999988874

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=99.30  E-value=4.2e-12  Score=92.31  Aligned_cols=70  Identities=39%  Similarity=0.616  Sum_probs=61.8

Q ss_pred             HHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCce--eEEEEeec-CCCCCCcc
Q 039837          453 ELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKV--RVLHFVDG-IPKSHSGK  528 (544)
Q Consensus       453 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p--~~~~~~~~-~P~t~~GK  528 (544)
                      |||++|.+||+|.+++|++.+++..|+.+++++++      +.+++.++++++|+.|++|  ..++.+++ ||+|++||
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~GK   73 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSGK   73 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCcceeeEEEEccccCcCCCCCCCC
Confidence            69999999999999999999999889999999988      4499999999999999999  55666677 99999998

...

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.90  E-value=8.2e-08  Score=92.34  Aligned_cols=224  Identities=17%  Similarity=0.195  Sum_probs=130.0

Q ss_pred             CCCCCCCCCcCcceeeccHHHHHHHHHhhccccC--Ccc-cCccEEEEecchhHH---HHH-HHHHHhhHhccceEEEcC
Q 039837          187 DDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV--PEM-IGQVTTLGLIPFFHI---YGI-TGICCATLRNKGKVVMMN  259 (544)
Q Consensus       187 ~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~--~~~-~~~~~~~~~~p~~~~---~g~-~~~~~~~l~~G~~~~~~~  259 (544)
                      ....+|||+|.|--+.+.+..+......+...+.  ... .....++...|-...   ++. ....+.....+....+-+
T Consensus        93 ~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  172 (365)
T PF04443_consen   93 KVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGSRFALDN  172 (365)
T ss_pred             eEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCceeeecC
Confidence            3467899999986666666655554433332221  011 112233333333211   111 112223334555534422


Q ss_pred             -ccCHHHHHHHHH----HcCceeeecchHHHHHHhcCCCCCc--cCccc-cccccEEEec------CCCCH-hHHHHHHh
Q 039837          260 -RFELRAFLDALI----THEVTFAPIVPPIILSLVKDPIVDE--FDLSK-LQLRAVMTAA------APLAP-DLLSSFEK  324 (544)
Q Consensus       260 -~~~~~~~~~~i~----~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~-l~~~~v~~~G------~~~~~-~~~~~~~~  324 (544)
                       .++.+.+.+.+.    +.++..++++|.++..++...+...  ..++. ..+  +..||      +.+++ ++.+.+.+
T Consensus       173 ~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~v--i~~GGwK~~~~e~v~r~ef~~~l~~  250 (365)
T PF04443_consen  173 DELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIV--IHGGGWKGRRKEAVSREEFYARLQE  250 (365)
T ss_pred             CccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEE--EeCCCCCccccCccCHHHHHHHHHH
Confidence             356665555553    4678999999998877765433332  23332 223  44444      24654 66667777


Q ss_pred             hcCCC----eEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEeccccccc
Q 039837          325 KFPGV----QVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQG  400 (544)
Q Consensus       325 ~~~~~----~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~g  400 (544)
                      .| |+    .+++.|||||.....+.+.          .+.  .+.|-. +.|.|+++..+++.|+.|-|.+-++... .
T Consensus       251 ~~-Gv~~~~~i~~~ygmtEl~s~~~~~~----------~~~--~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~~~-s  315 (365)
T PF04443_consen  251 VF-GVIPIENIYDMYGMTELNSQAYECG----------HGH--FHVPPW-VIIRDPETLEPLPPGETGLIQVIDLANT-S  315 (365)
T ss_pred             HH-CCCCHHHeeeeeeccccchhheeCC----------CCc--ccCCCe-EEEECCCCCcCCCCCCeeEEEEEccccc-C
Confidence            78 55    7999999999876554331          011  122222 7777999999999999999988765432 1


Q ss_pred             ccCChhhhhcccCCCCeeecCceEEEcCC--------CcEEEEeecCC
Q 039837          401 YYNNEEETARTIDKNGWLHTGDIGYIDDD--------GDIFIVDRIKE  440 (544)
Q Consensus       401 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~--------g~~~~~GR~~d  440 (544)
                                   ..+..-|.|+|.+..+        .++.++||.+.
T Consensus       316 -------------~p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~  350 (365)
T PF04443_consen  316 -------------YPGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG  350 (365)
T ss_pred             -------------CCcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence                         2345779999988654        26899999874

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.03  E-value=7.5e-05  Score=76.46  Aligned_cols=178  Identities=16%  Similarity=0.239  Sum_probs=101.2

Q ss_pred             ccccccccEEEecCCCCHhHHHHHHhhcCCCeEE-ecccCccccccccccCCCCCCCCCCCCCcccccCCCc-eEEEEeC
Q 039837          299 LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQ-EAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNL-EVKFINP  376 (544)
Q Consensus       299 ~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~  376 (544)
                      ++.+++  |.+.+..-......++++.++++.++ ..|++||.- +.+..       ....  ..+...++. -++.++.
T Consensus       266 WP~L~~--v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~-i~i~~-------~~~~--~~~~l~~~~~ffEFip~  333 (528)
T PF03321_consen  266 WPNLKL--VSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGF-IGIPL-------DPED--PGYVLAPDSGFFEFIPV  333 (528)
T ss_dssp             STT--E--EEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEE-EEEES--------CCC----EEE-TTSSEEEEEE-
T ss_pred             CCCCcE--EEEEcCCChHHHHHHHHHHcCCCceeeccccccceE-EEEec-------CCCC--CceEeecCCeEEEEEec
Confidence            556665  65555555556778888888776655 459999953 33221       1111  122233332 4555553


Q ss_pred             CC--------CC-----cCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcC--CC--cEEEEeecC
Q 039837          377 ET--------GK-----SLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDD--DG--DIFIVDRIK  439 (544)
Q Consensus       377 ~~--------~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~--~g--~~~~~GR~~  439 (544)
                      ++        .+     .+..|+..||+++..+   |.|+              |+.||+++...  ++  .+.|.||.+
T Consensus       334 ~~~~~~~~~~~~~l~~~ele~G~~YelviTt~~---GLyR--------------Y~iGDvVrv~gf~~~~P~i~F~~R~~  396 (528)
T PF03321_consen  334 DEDEQNPSEQPKTLLLHELEVGEEYELVITTNS---GLYR--------------YRIGDVVRVTGFYNQTPRIEFVGRRG  396 (528)
T ss_dssp             STT-------SSSEEGGG--TT-EEEEEEESTT---S-SS--------------EEECEEEEEEEEETTEEEEEEEEETT
T ss_pred             cCCcccccCCCceecHHHhcCCCeEEEEEeccc---ceee--------------eecCCEEEEeeccCCCcEEEEeccCC
Confidence            32        22     3567888899998642   3332              89999999843  34  699999999


Q ss_pred             CceeecceeeChHHHHHHHhcC-----CCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcc
Q 039837          440 ELIKYKGFQVAPAELEAILLTH-----PSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNV  506 (544)
Q Consensus       440 d~i~~~G~~v~~~~iE~~l~~~-----~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l  506 (544)
                      ..+.+.|++++-.++++++.+.     -.+.+..+...........-+.++++... ..+.+.+.+.+.+.|
T Consensus       397 ~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~-~~~~~~~~~~lD~~L  467 (528)
T PF03321_consen  397 QVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE-PDDLEELAKALDESL  467 (528)
T ss_dssp             EEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS--HHHHHHHHHHHHHCS
T ss_pred             ceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC-chHHHHHHHHHHHHh
Confidence            9999999999999999999775     34667777655322333445566665544 223455666665555

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.85  E-value=0.003  Score=65.05  Aligned_cols=135  Identities=16%  Similarity=0.192  Sum_probs=83.1

Q ss_pred             cccccccc-EEEecCCCCHhHHHHHHhhcCCCe-EEecccCccccccccccCCCCCCCCCCCCCccccc--CCCceEEEE
Q 039837          299 LSKLQLRA-VMTAAAPLAPDLLSSFEKKFPGVQ-VQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFI--LPNLEVKFI  374 (544)
Q Consensus       299 ~~~l~~~~-v~~~G~~~~~~~~~~~~~~~~~~~-i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~--~~~~~~~i~  374 (544)
                      ++.+++-. +..||..   .....++..+++.. +...|++||.-..+-..       ....+...+..  ..+.-.+.+
T Consensus       301 WPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~-------~~~~p~~~~~~l~~~~~ffEFi  370 (597)
T PLN02249        301 WPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLN-------PMCKPSEVSYTIMPNMAYFEFL  370 (597)
T ss_pred             CCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecC-------CCCCCCCcceEecCCcEEEEee
Confidence            45655433 4444433   56677777776665 55669999954322111       11111112211  224455565


Q ss_pred             eCC-CC------------CcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcC----CCcEEEEee
Q 039837          375 NPE-TG------------KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDD----DGDIFIVDR  437 (544)
Q Consensus       375 d~~-~~------------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR  437 (544)
                      +.+ .+            ..+..|+..+|+|+..+   |.|              .|+.||+++...    --++.|.||
T Consensus       371 P~~~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT~~---GLy--------------RY~iGDvVrvtgf~~~~P~i~F~gR  433 (597)
T PLN02249        371 PHNHDGDGALDETSLVELADVEVGKEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFKFIRR  433 (597)
T ss_pred             ecccCCcccCCCCcEecHHHcCCCCeEEEEEEccc---cee--------------EeecCCEEEEeeccCCCcEEEEEcc
Confidence            421 11            12456777889998532   222              288999999854    246999999


Q ss_pred             cCCceeecceeeChHHHHHHHhc
Q 039837          438 IKELIKYKGFQVAPAELEAILLT  460 (544)
Q Consensus       438 ~~d~i~~~G~~v~~~~iE~~l~~  460 (544)
                      .+..+.+.|+++.-.+++++|.+
T Consensus       434 ~~~~ls~~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        434 KNVLLSIESDKTDEADLQKAVEN  456 (597)
T ss_pred             CCcceecccccCCHHHHHHHHHH
Confidence            99999999999999999998876

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.77  E-value=0.0023  Score=65.30  Aligned_cols=138  Identities=12%  Similarity=0.138  Sum_probs=85.5

Q ss_pred             ccccccccEEEecCCCCHhHHHHHHhhcCCCeEEec-ccCccccccccccCCCCCCCCCCCCCcccccCCCce-EEEEeC
Q 039837          299 LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEA-YGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLE-VKFINP  376 (544)
Q Consensus       299 ~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~-yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~i~d~  376 (544)
                      ++.+++  |.+....-.......++..+++++++.. |++||+-+.+-..+      ........+..+|+.. .+.++.
T Consensus       303 WP~lk~--I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P------~~~p~~~sy~L~p~~~yFEFip~  374 (612)
T PLN02620        303 WPNTKY--VDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNP------LCKPSEVSYTLIPTMAYFEFLPV  374 (612)
T ss_pred             CCCCcE--EEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCC------CCCcccceeeecCCcEEEEEeec
Confidence            455555  5555444555666777777778877665 99999654443222      1111111223334433 334431


Q ss_pred             CC-------------------CC-----cCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEc----C
Q 039837          377 ET-------------------GK-----SLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYID----D  428 (544)
Q Consensus       377 ~~-------------------~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~----~  428 (544)
                      +.                   ++     .+..|+.-||+|+.-+   |.|              .||.||+.+..    .
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~~---GLy--------------RYrlGDvv~V~Gf~n~  437 (612)
T PLN02620        375 HRNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTYA---GLY--------------RYRVGDVLRVAGFKNK  437 (612)
T ss_pred             cCcccccccccccccccccccCccccHHHccCCCeEEEEEEecC---ceE--------------EEecCCEEEEeeecCC
Confidence            11                   11     1466778899998522   222              38899999974    3


Q ss_pred             CCcEEEEeecCCceeecceeeChHHHHHHHhcC
Q 039837          429 DGDIFIVDRIKELIKYKGFQVAPAELEAILLTH  461 (544)
Q Consensus       429 ~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~  461 (544)
                      .-.+.|++|.+.+..+.|++.+-.++-+++.+.
T Consensus       438 ~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a  470 (612)
T PLN02620        438 APQFSFICRKNVVLSIDSDKTDEVELQNAVKNA  470 (612)
T ss_pred             CceEEEEeecCceeecccccCCHHHHHHHHHHH
Confidence            457999999999999999999999998877653

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=97.74  E-value=8.3e-05  Score=56.93  Aligned_cols=84  Identities=21%  Similarity=0.374  Sum_probs=48.7

Q ss_pred             ceeeChHHHHHHHhcCCCcc-ceEEEeecCCCCCceeEEEEEeCCCCCC---CHHHHHHHHHhcccC-CCceeEEEEe--
Q 039837          446 GFQVAPAELEAILLTHPSVE-DAAVVSLPDEEAGEIPAACVVMNPNAKE---SEDDIMDFVASNVAT-YKKVRVLHFV--  518 (544)
Q Consensus       446 G~~v~~~~iE~~l~~~~~v~-~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~-~~~p~~~~~~--  518 (544)
                      |.|++|.+||++|.++|++. ++.++ +......+.+.+.++..++...   ..+.+.+.+.+.+.. ..+-..+.++  
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~-v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~~V~lv~~   79 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIV-VTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRPEVELVPP   79 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEE-EEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-EEEEEE-T
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEE-EEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceEEEEEECC
Confidence            78999999999999999999 45544 4434456778888888775432   224444444443321 1222245455  


Q ss_pred             ecCCCCCCcccch
Q 039837          519 DGIPKSHSGKIMR  531 (544)
Q Consensus       519 ~~~P~t~~GKi~r  531 (544)
                      ++||++ .||..|
T Consensus        80 gtLpr~-~~K~~R   91 (96)
T PF14535_consen   80 GTLPRS-EGKAKR   91 (96)
T ss_dssp             T-S----SSSS-S
T ss_pred             CCccCC-CCcceE
Confidence            689998 578766

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.18  E-value=0.0051  Score=62.93  Aligned_cols=138  Identities=14%  Similarity=0.165  Sum_probs=88.0

Q ss_pred             ccccccccEEEecCCCCHhHHHHHHhhcCCCeEEe-cccCccccccccccCCCCCCCCCCCCCcccccCCCce-EEEEeC
Q 039837          299 LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQE-AYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLE-VKFINP  376 (544)
Q Consensus       299 ~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~-~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~i~d~  376 (544)
                      ++.+++  |.+....-.......++..+++++++. .||+||+-+.+-..+      ........+..+|+.. .+.++.
T Consensus       292 WP~lk~--I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p------~~~p~~~sy~L~p~~~yFEFip~  363 (606)
T PLN02247        292 WPRTKY--IEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKP------LSDPSDVSYTLLPNMAYFEFLPV  363 (606)
T ss_pred             CCCCcE--EEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCc------CCCccCCceeecCCcEEEEEeec
Confidence            566666  555544456667778887778888776 599999654443221      1111112233334433 334431


Q ss_pred             CCCC-----------------------------cCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEc
Q 039837          377 ETGK-----------------------------SLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYID  427 (544)
Q Consensus       377 ~~~~-----------------------------~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~  427 (544)
                      +++.                             .+..|+.-||+|+.-+   |.|              .||.||+.+..
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~~---GLY--------------RYrlGDvv~V~  426 (606)
T PLN02247        364 DKNNGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTFT---GLY--------------RYRVGDILMVT  426 (606)
T ss_pred             CCCcccccccccccccccccccccccCceecHHHccCCCeEEEEEEecC---ceE--------------EEecCCEEEEe
Confidence            2211                             3456777889888421   222              38899999974


Q ss_pred             ----CCCcEEEEeecCCceeecceeeChHHHHHHHhcC
Q 039837          428 ----DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTH  461 (544)
Q Consensus       428 ----~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~  461 (544)
                          ..-.+.|++|.+.+..+.|++.+-.++-+++.+.
T Consensus       427 GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a  464 (606)
T PLN02247        427 GFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA  464 (606)
T ss_pred             eecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence                3467999999999999999999999998888663

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=94.72  E-value=0.23  Score=48.81  Aligned_cols=87  Identities=16%  Similarity=0.099  Sum_probs=72.5

Q ss_pred             eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--ccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEE
Q 039837           63 AYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNV--AEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV  140 (544)
Q Consensus        63 ~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii  140 (544)
                      -+|+.|+...+..+|+.|...|...||+|..+..-+  ..-+...+|+.++|++++|+.+.. .+.-..++++.++.+|.
T Consensus       109 ~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~-~~~~~~l~~df~~tvI~  187 (438)
T COG1541         109 GYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGN-TERQLELMKDFKPTVIA  187 (438)
T ss_pred             ecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCcc-HHHHHHHHHhcCCcEEE
Confidence            489999999999999999999999999998877722  122677889999999999999844 45667889999999999


Q ss_pred             eccchHHHhh
Q 039837          141 SYAPIYEKVK  150 (544)
Q Consensus       141 ~~~~~~~~~~  150 (544)
                      +.+.....+.
T Consensus       188 ~tps~~l~la  197 (438)
T COG1541         188 ATPSYLLYLA  197 (438)
T ss_pred             EChHHHHHHH
Confidence            9888665543

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=86.19  E-value=5.1  Score=40.30  Aligned_cols=86  Identities=12%  Similarity=0.077  Sum_probs=65.2

Q ss_pred             eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc--cHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEE
Q 039837           63 AYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVA--EYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV  140 (544)
Q Consensus        63 ~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii  140 (544)
                      .+|..++......++..+...|+++||++......+.  ......++....|+..++++... .+.+...+++.++++++
T Consensus        94 ~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~  172 (422)
T TIGR02155        94 GYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIM  172 (422)
T ss_pred             ccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEE
Confidence            3688888777777777888889999999887765543  22234567888999999887765 56788899999999999


Q ss_pred             eccchHHHh
Q 039837          141 SYAPIYEKV  149 (544)
Q Consensus       141 ~~~~~~~~~  149 (544)
                      ..+.....+
T Consensus       173 ~~Ps~l~~L  181 (422)
T TIGR02155       173 VTPSYMLNL  181 (422)
T ss_pred             EcHHHHHHH
Confidence            887765443

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=86.15  E-value=6.3  Score=39.97  Aligned_cols=80  Identities=13%  Similarity=0.122  Sum_probs=60.7

Q ss_pred             eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcc--HHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEE
Q 039837           63 AYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAE--YGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV  140 (544)
Q Consensus        63 ~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii  140 (544)
                      .+|..++...+...+..+...|+.+||++.+..+.+..  .....+++...|+..++...   ......+++..++.+++
T Consensus       105 ~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l~  181 (445)
T TIGR03335       105 FLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGIV  181 (445)
T ss_pred             eecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEEE
Confidence            47999999988888888888899999999998876543  23445778899998876643   23456778889999887


Q ss_pred             eccch
Q 039837          141 SYAPI  145 (544)
Q Consensus       141 ~~~~~  145 (544)
                      .....
T Consensus       182 ~~ps~  186 (445)
T TIGR03335       182 ASVFK  186 (445)
T ss_pred             ECHHH
Confidence            65443

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	544
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		4e-95
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		3e-87
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		3e-56
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		2e-55
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		4e-55
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		4e-55
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		6e-52
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		8e-51
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-50
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-50
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		3e-42
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		2e-28
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		1e-27
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		1e-25
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		7e-25
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		8e-21
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		4e-20
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		9e-20
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		9e-20
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		1e-19
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-19
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		3e-19
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		3e-19
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		5e-19
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		9e-17
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		2e-16
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		3e-16
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		4e-16
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		5e-16
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		1e-15
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-15
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		5e-15
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-14
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		3e-14
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		2e-11
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		7e-11
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		7e-11
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		7e-11
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		8e-11
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		8e-11
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		3e-10
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		3e-10
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		6e-10
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		6e-07
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		1e-05
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		4e-05
3t5a_A	480	Crystal Structure Of N-Terminal Domain Of Faal28 G3		6e-05
3e53_A	480	Crystal Structure Of N-Terminal Domain Of A Fatty A		1e-04
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		1e-04
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		3e-04
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		6e-04

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  345 bits (885), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 188/531 (35%), Positives = 300/531 (56%), Gaps = 13/531 (2%)
Query: 19  EEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAK 78
           EE IFRS+ P + +P+N+ L  +VL++   ++ K   +   +G  YTYA V    R  A 
Sbjct: 5   EEFIFRSKLPDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVAS 64
Query: 79  ALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKL 138
            L  +G+++G V+++ LP+  E+ +  LG    G + + ANP +  +EL K   A+ AKL
Sbjct: 65  GLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKL 124
Query: 139 IVSYAPIYEKVKGLGLPI---IVLGEERIESAINWSELIEAADKAGN--NFSNDDDV--- 190
           +++ A  YEKVK         ++  +   +  +++SEL +A +      + S DD V   
Sbjct: 125 LITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALP 184
Query: 191 -KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMI--GQVTTLGLIPFFHIYGITGICCA 247
                  + KGVMLTH+ L+ ++   +    P +    +   L ++P FHIY +  I   
Sbjct: 185 YSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLC 244
Query: 248 TLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAV 307
            LR    +++M +FE+ + L  +  ++V+ AP+VPP+++S+ K P +D+ DLS   LR +
Sbjct: 245 GLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLS--SLRMI 302
Query: 308 MTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILP 367
            +           +   KFP  ++ + YG+TE   +       A      K  + G ++ 
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362
Query: 368 NLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXX 427
           N E+K ++PETG SLP N PGE+C+R   +M+GY N+ E T+RTIDK GWLHT       
Sbjct: 363 NAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID 422
Query: 428 XXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVM 487
                      KELIKYKGFQVAPAELEA+L+ HP + DAAVV L DE+AGE+P A VV 
Sbjct: 423 DDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVK 482
Query: 488 NPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
           +  ++ +ED+I  +++  V  YK+++ + F++ IPK+ SGKI+R+ LK+K+
Sbjct: 483 SEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKL 533

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  319 bits (817), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 184/542 (33%), Positives = 295/542 (54%), Gaps = 23/542 (4%)
Query: 17  HDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGF 76
           ++ + IFRS+ P + +P +++L D++ Q+   +A K   +   +G  YTY+ V   +R  
Sbjct: 42  NNSDVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQI 101
Query: 77  AKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADA 136
           A     LG+ +  VV+++LPN  E+ +  L     G   + ANP    +E+ KQ  A++ 
Sbjct: 102 AANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNT 161
Query: 137 KLIVSYAPIYEKVKGL----GLPIIVLGEERI----ESAINWSELIEAADKAGN-----N 183
           KLI++ A   +K+K L    G+ I+ + +       E  + ++EL ++  +A        
Sbjct: 162 KLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVE 221
Query: 184 FSNDDDV----KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMI--GQVTTLGLIPFFH 237
            S DD V          + KGVMLTH+ LV ++   +    P +        L ++P FH
Sbjct: 222 ISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFH 281
Query: 238 IYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEF 297
           IY +  I    LR    +++M +FE+   L+ +   +VT AP+VPPI+L++ K    +++
Sbjct: 282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKY 341
Query: 298 DLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHS-CITLTYGDPANPSAG 356
           DLS   +R V +           +   KFP  ++ + YG+TE    + ++ G    P   
Sbjct: 342 DLS--SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFP- 398
Query: 357 SKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNG 416
            K  + G ++ N E+K ++P+TG SL  N PGE+C+R   +M+GY NN   TA TIDK+G
Sbjct: 399 VKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDG 458
Query: 417 WLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEE 476
           WLHT                  KELIKYKGFQVAPAELEA+L+ HP + D AVV++ +E 
Sbjct: 459 WLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEA 518
Query: 477 AGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
           AGE+P A VV + +++ SEDD+  FV+  V  YK++  + F + IPK+ SGKI+R+ L+ 
Sbjct: 519 AGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRA 578
Query: 537 KM 538
           K+
Sbjct: 579 KL 580

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  216 bits (550), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 162/554 (29%), Positives = 264/554 (47%), Gaps = 34/554 (6%)
Query: 12  PLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYA---DKVAFVEAVSGKAYTYAQ 68
           PL +  D ++I +   P  P+ E+ T  + + +  + YA     +AF +A      TYA+
Sbjct: 2   PLGSMEDAKNIKKGPAPFYPL-EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAE 60
Query: 69  VARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELK 128
               +   A+A++  GL     ++V   N  ++ +  LG +  G   + AN   +  EL 
Sbjct: 61  YFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELL 120
Query: 129 KQVDAADAKLIVSYAPIYEKVKGL--GLPII---VLGEERIESAINWSELIEAADKAGNN 183
             ++ +   ++       +K+  +   LPII   ++ + + +     S            
Sbjct: 121 NSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPG 180
Query: 184 FSNDDDVKQT---------------DLWISKGVMLTHRNLVANLCSTLFSVVP-EMIGQV 227
           F+  D V ++                  + KGV L HR            +   ++I   
Sbjct: 181 FNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDT 240
Query: 228 TTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILS 287
             L ++PF H +G+       L    +VV+M RFE   FL +L  +++  A +VP +   
Sbjct: 241 AILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 299
Query: 288 LVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTY 347
             K  ++D++DLS L    + +           +  K+F    +++ YGLTE +   L  
Sbjct: 300 FAKSTLIDKYDLSNLH--EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI- 356
Query: 348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEE 407
                P    K  +VG ++P  E K ++ +TGK+L  N  GELCVR   +M GY NN E 
Sbjct: 357 ----TPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEA 412
Query: 408 TARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDA 467
           T   IDK+GWLH+                  K LIKYKG+QVAPAELE+ILL HP++ DA
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDA 472
Query: 468 AVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHS 526
            V  LPD++AGE+PAA VV+      +E +I+D+VAS V T KK+R  + FVD +PK  +
Sbjct: 473 GVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLT 532
Query: 527 GKIMRRILKDKMLE 540
           GK+  R +++ +++
Sbjct: 533 GKLDARKIREILIK 546

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  213 bits (543), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 164/554 (29%), Positives = 264/554 (47%), Gaps = 34/554 (6%)
Query: 12  PLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYA---DKVAFVEAVSGKAYTYAQ 68
           PL +  D ++I +   P  P+ E+ T  + + +  + YA     +AF +A      TYA+
Sbjct: 2   PLGSMEDAKNIKKGPAPFYPL-EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAE 60
Query: 69  VARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELK 128
               +   A+A++  GL     ++V   N  ++ +  LG +  G   + AN   +  EL 
Sbjct: 61  YFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELL 120
Query: 129 KQVDAADAKLIVSYAPIYEKVKGL--GLPII---VLGEERIESAINWSELIEAADKAGNN 183
             ++ +   ++       +K+  +   LPII   ++ + + +     S            
Sbjct: 121 NSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPG 180
Query: 184 FSNDDDVKQT---------------DLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVT 228
           F+  D V ++                  + KGV L HR L          +    I   T
Sbjct: 181 FNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGNQIAPDT 240
Query: 229 T-LGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILS 287
             L ++PF H +G+       L +  +VV+M RFE   FL +L  +++  A +VP +   
Sbjct: 241 AILSVVPFHHGFGMF-TTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 299
Query: 288 LVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTY 347
           L K  ++D++DLS L    + +           +  K+F    +++ YGLTE +   L  
Sbjct: 300 LAKSTLIDKYDLSNLH--EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI- 356
Query: 348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEE 407
                P    K  +VG ++P  E K ++ +TGK+L  N  GEL VR   +M GY NN E 
Sbjct: 357 ----TPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEA 412
Query: 408 TARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDA 467
           T   IDK+GWLH+                  K LIKYKG QVAPAELE+ILL HP++ DA
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDA 472
Query: 468 AVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHS 526
            V  LPD++AGE+PAA VV+      +E +I+D+VAS V T KK+R  + FVD +PK  +
Sbjct: 473 GVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLT 532
Query: 527 GKIMRRILKDKMLE 540
           GK+  R +++ +++
Sbjct: 533 GKLDARKIREILIK 546

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  212 bits (540), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 152/510 (29%), Positives = 244/510 (47%), Gaps = 30/510 (5%)
Query: 53  VAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG 112
           +AF +A      TYA+    +   A+A++  GL     ++V   N  ++ +  LG +  G
Sbjct: 40  IAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIG 99
Query: 113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL--GLPII---VLGEERIESA 167
              + AN   +  EL   ++ +   ++       +K+  +   LPII   ++ + + +  
Sbjct: 100 VAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ 159
Query: 168 INWSELIEAADKAGNNFSNDDDVKQT---------------DLWISKGVMLTHRNLVANL 212
              S            F+  D V ++                  + KGV L HR      
Sbjct: 160 GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRF 219
Query: 213 CSTLFSVVP-EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI 271
                 +   ++I     L ++PF H +G+       L    +VV+M RFE   FL +L 
Sbjct: 220 SHARDPIFGNQIIPDTAILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQ 278
Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQV 331
            +++  A +VP +     K  ++D++DLS L    + +           +  K+F    +
Sbjct: 279 DYKIQSALLVPTLFSFFAKSTLIDKYDLSNLH--EIASGGAPLSKEVGEAVAKRFHLPGI 336
Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELC 391
           ++ YGLTE +   L       P    K  +VG ++P  E K ++ +TGK+L  N  GELC
Sbjct: 337 RQGYGLTETTSAILI-----TPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELC 391
Query: 392 VRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAP 451
           VR   +M GY NN E T   IDK+GWLH+                  K LIKYKG+QVAP
Sbjct: 392 VRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAP 451
Query: 452 AELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKK 511
           AELE+ILL HP++ DA V  LPD++AGE+PAA VV+      +E +I+D+VAS V T KK
Sbjct: 452 AELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKK 511
Query: 512 VR-VLHFVDGIPKSHSGKIMRRILKDKMLE 540
           +R  + FVD +PK  +GK+  R +++ +++
Sbjct: 512 LRGGVVFVDEVPKGLTGKLDARKIREILIK 541

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  212 bits (540), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 152/510 (29%), Positives = 244/510 (47%), Gaps = 30/510 (5%)
Query: 53  VAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG 112
           +AF +A      TYA+    +   A+A++  GL     ++V   N  ++ +  LG +  G
Sbjct: 40  IAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIG 99
Query: 113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL--GLPII---VLGEERIESA 167
              + AN   +  EL   ++ +   ++       +K+  +   LPII   ++ + + +  
Sbjct: 100 VAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ 159
Query: 168 INWSELIEAADKAGNNFSNDDDVKQT---------------DLWISKGVMLTHRNLVANL 212
              S            F+  D V ++                  + KGV L HR      
Sbjct: 160 GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRF 219
Query: 213 CSTLFSVVP-EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI 271
                 +   ++I     L ++PF H +G+       L    +VV+M RFE   FL +L 
Sbjct: 220 SHARDPIFGNQIIPDTAILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQ 278
Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQV 331
            +++  A +VP +     K  ++D++DLS L    + +           +  K+F    +
Sbjct: 279 DYKIQSALLVPTLFSFFAKSTLIDKYDLSNLH--EIASGGAPLSKEVGEAVAKRFHLPGI 336
Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELC 391
           ++ YGLTE +   L       P    K  +VG ++P  E K ++ +TGK+L  N  GELC
Sbjct: 337 RQGYGLTETTSAILI-----TPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELC 391
Query: 392 VRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAP 451
           VR   +M GY NN E T   IDK+GWLH+                  K LIKYKG+QVAP
Sbjct: 392 VRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAP 451
Query: 452 AELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKK 511
           AELE+ILL HP++ DA V  LPD++AGE+PAA VV+      +E +I+D+VAS V T KK
Sbjct: 452 AELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKK 511
Query: 512 VR-VLHFVDGIPKSHSGKIMRRILKDKMLE 540
           +R  + FVD +PK  +GK+  R +++ +++
Sbjct: 512 LRGGVVFVDEVPKGLTGKLDARKIREILIK 541

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  201 bits (512), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 162/553 (29%), Positives = 261/553 (47%), Gaps = 37/553 (6%)
Query: 14  AAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYAD---KVAFVEAVSGKAYTYAQVA 70
            +  D ++I     P  P+ E+ T  + + +  + YA     +AF +A +    TY++  
Sbjct: 33  GSMEDAKNIMHGPPPFYPL-EDGTAGEQLHKAMKRYAQVPGTIAFTDAHAEVNITYSEYF 91
Query: 71  RDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQ 130
                 A+ ++  GL     + V   N  ++ +   G +  G   +  N   +  EL   
Sbjct: 92  EMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYNERELYNS 151
Query: 131 VDAADAKLIVSYAPIYEKVKGL--GLPII---VLGEERIESAINWS--ELIEAADKAGNN 183
           +  +   ++       +K+ G+   LPII   V+ + R +     S    IE+   AG N
Sbjct: 152 LSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILDSREDYMGKQSMYSFIESHLPAGFN 211
Query: 184 ---FSNDDDVKQT----------DLWISKGVMLTHRNLVANLCSTLFSVVP-EMIGQVTT 229
              +  D   ++T             + KGV LTH+N+          V   ++I     
Sbjct: 212 EYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAI 271
Query: 230 LGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLV 289
           L +IPF H +G+       L    ++V+M RFE   FL +L  +++  A +VP +     
Sbjct: 272 LTVIPFHHGFGMF-TTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA 330
Query: 290 KDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEH-SCITLT-Y 347
           K  +VD++DLS L    + +           +  K+F    +++ YGLTE  S I +T  
Sbjct: 331 KSTLVDKYDLSNLH--EIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPR 388
Query: 348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEE 407
           G    P A  K      ++P    K ++ +TGK+L  N  GELCV+   +M+GY NN E 
Sbjct: 389 GRDDKPGACGK------VVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEA 442
Query: 408 TARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDA 467
           T+  IDK+GWLH+                  K LIKYKG+QV PAELE+ILL HP + DA
Sbjct: 443 TSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDA 502
Query: 468 AVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHS 526
            V  +PD +AGE+PAA VV+      +E ++MD+VA  V   K++R  + FVD +PK  +
Sbjct: 503 GVAGIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVTASKRLRGGVKFVDEVPKGLT 562
Query: 527 GKIMRRILKDKML 539
           GKI  R +++ ++
Sbjct: 563 GKIDARKIREILM 575

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  198 bits (503), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 162/549 (29%), Positives = 257/549 (46%), Gaps = 41/549 (7%)
Query: 17  HDEEHIFRSRHPAVPVPEN---VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDT 73
            ++E+I     P  P+ E      L  ++ + A+L A  +AF  AV+G  Y+YA+    +
Sbjct: 5   ENDENIVVGPKPFYPIEEGSAGTQLRKYMERYAKLGA--IAFTNAVTGVDYSYAEYLEKS 62
Query: 74  RGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDA 133
               KAL++ GL     + +   N  E+ I  +  +  G   +  N      EL   +  
Sbjct: 63  XXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGI 122
Query: 134 ADAKLIVSYAPIYEKVKGLGLPIIVLGEERI-ESAINW------SELIEAADKAGNNFSN 186
           +   ++ S     +KV  +   +  +    I +S +++         I+     G   S+
Sbjct: 123 SKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASS 182
Query: 187 D-----DDVKQTDLWIS--------KGVMLTHRNLVANLCSTLFSVVPEMIGQVT-TLGL 232
                 D  +Q  L ++        KGV LTH N+V         +    +   T  L +
Sbjct: 183 FKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTV 242
Query: 233 IPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDP 292
           +PF H +G+       L    +VVM+ +F+   FL  L  ++ T   +VP +   L K  
Sbjct: 243 VPFHHGFGMF-TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE 301
Query: 293 IVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEH-SCITLTYGDPA 351
           +++++DLS   L  + +           +  ++F    V++ YGLTE  S I +T     
Sbjct: 302 LLNKYDLS--NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT----- 354
Query: 352 NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETART 411
            P    K  + G ++P  + K I+ +T KSL  N  GE+CV+   +M+GY NN E T   
Sbjct: 355 -PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL 413
Query: 412 IDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS 471
           ID+ GWLHT                  K LIKYKG+QV PAELE++LL HPS+ DA V  
Sbjct: 414 IDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAG 473
Query: 472 LPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHSGKI- 529
           +PD  AGE+P A VV+      +E ++MD+VAS V+  K++R  + FVD +PK  +GKI 
Sbjct: 474 VPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKID 533
Query: 530 ---MRRILK 535
              +R ILK
Sbjct: 534 GRAIREILK 542

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  197 bits (501), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 162/549 (29%), Positives = 257/549 (46%), Gaps = 41/549 (7%)
Query: 17  HDEEHIFRSRHPAVPVPEN---VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDT 73
            ++E+I     P  P+ E      L  ++ + A+L A  +AF  AV+G  Y+YA+    +
Sbjct: 5   ENDENIVVGPKPFYPIEEGSAGTQLRKYMERYAKLGA--IAFTNAVTGVDYSYAEYLEKS 62
Query: 74  RGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDA 133
               KAL++ GL     + +   N  E+ I  +  +  G   +  N      EL   +  
Sbjct: 63  CXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGI 122
Query: 134 ADAKLIVSYAPIYEKVKGLGLPIIVLGEERI-ESAINW------SELIEAADKAGNNFSN 186
           +   ++ S     +KV  +   +  +    I +S +++         I+     G   S+
Sbjct: 123 SKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGYQASS 182
Query: 187 D-----DDVKQTDLWIS--------KGVMLTHRNLVANLCSTLFSVVPEMIGQVT-TLGL 232
                 D  +Q  L ++        KGV LTH N+V         +    +   T  L +
Sbjct: 183 FKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTV 242
Query: 233 IPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDP 292
           +PF H +G+       L    +VVM+ +F+   FL  L  ++ T   +VP +   L K  
Sbjct: 243 VPFHHGFGMF-TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKSE 301
Query: 293 IVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEH-SCITLTYGDPA 351
           +++++DLS   L  + +           +  ++F    V++ YGLTE  S I +T     
Sbjct: 302 LLNKYDLS--NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT----- 354
Query: 352 NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETART 411
            P    K  + G ++P  + K I+ +T KSL  N  GE+CV+   +M+GY NN E T   
Sbjct: 355 -PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL 413
Query: 412 IDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS 471
           ID+ GWLHT                  K LIKYKG+QV PAELE++LL HPS+ DA V  
Sbjct: 414 IDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAG 473
Query: 472 LPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHSGKI- 529
           +PD  AGE+P A VV+      +E ++MD+VAS V+  K++R  + FVD +PK  +GKI 
Sbjct: 474 VPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKID 533
Query: 530 ---MRRILK 535
              +R ILK
Sbjct: 534 GRAIREILK 542

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  197 bits (501), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 162/549 (29%), Positives = 257/549 (46%), Gaps = 41/549 (7%)
Query: 17  HDEEHIFRSRHPAVPVPEN---VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDT 73
            ++E+I     P  P+ E      L  ++ + A+L A  +AF  AV+G  Y+YA+    +
Sbjct: 5   ENDENIVVGPKPFYPIEEGSAGTQLRKYMERYAKLGA--IAFTNAVTGVDYSYAEYLEKS 62
Query: 74  RGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDA 133
               KAL++ GL     + +   N  E+ I  +  +  G   +  N      EL   +  
Sbjct: 63  CXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGI 122
Query: 134 ADAKLIVSYAPIYEKVKGLGLPIIVLGEERI-ESAINW------SELIEAADKAGNNFSN 186
           +   ++ S     +KV  +   +  +    I +S +++         I+     G   S+
Sbjct: 123 SKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASS 182
Query: 187 D-----DDVKQTDLWIS--------KGVMLTHRNLVANLCSTLFSVVPEMIGQVT-TLGL 232
                 D  +Q  L ++        KGV LTH N+V         +    +   T  L +
Sbjct: 183 FKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTV 242
Query: 233 IPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDP 292
           +PF H +G+       L    +VVM+ +F+   FL  L  ++ T   +VP +   L K  
Sbjct: 243 VPFHHGFGMF-TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE 301
Query: 293 IVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEH-SCITLTYGDPA 351
           +++++DLS   L  + +           +  ++F    V++ YGLTE  S I +T     
Sbjct: 302 LLNKYDLS--NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT----- 354
Query: 352 NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETART 411
            P    K  + G ++P  + K I+ +T KSL  N  GE+CV+   +M+GY NN E T   
Sbjct: 355 -PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL 413
Query: 412 IDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS 471
           ID+ GWLHT                  K LIKYKG+QV PAELE++LL HPS+ DA V  
Sbjct: 414 IDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAG 473
Query: 472 LPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHSGKI- 529
           +PD  AGE+P A VV+      +E ++MD+VAS V+  K++R  + FVD +PK  +GKI 
Sbjct: 474 VPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKID 533
Query: 530 ---MRRILK 535
              +R ILK
Sbjct: 534 GRAIREILK 542

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 158/565 (27%), Positives = 264/565 (46%), Gaps = 86/565 (15%)
Query: 28  PAVPVPENVTLPDFVLQDAELYADKVAFVEAVSG------KAYTYAQVARDTRGFAKALR 81
           P++  P+ ++L D +   AE + +K A + A         ++  + ++   T+  A  + 
Sbjct: 12  PSLYYPK-ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGIS 70
Query: 82  SLGLRKGQVVIVVLPNVAEY--GIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLI 139
             G+RKG+ V V +PN  +Y   I AL  +AA  V    NP   + EL+  ++ ++A  +
Sbjct: 71  RKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPV--PINPXYKSFELEHILNDSEATTL 128
Query: 140 VSYAPIYEKVK------GLGLPIIVLGEERIESAINWSELIEAADKAGNNFSN-----DD 188
           V ++ +YE  K      G+    +V GE      +N   L E  D    +F N     ++
Sbjct: 129 VVHSXLYENFKPVLEKTGVERVFVVGGE------VN--SLSEVXDSGSEDFENVKVNPEE 180
Query: 189 DV-----KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHI--YGI 241
           DV             KGV LTH NL AN      +V   +    T +G  P FH   +G+
Sbjct: 181 DVALIPYTGGTTGXPKGVXLTHFNLAANALQ--LAVATGLSHXDTIVGCXPXFHSAEFGL 238
Query: 242 TGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVK--DPIVDEFDL 299
             +   T+ N+   V+   F      + +  ++ TF+  VPP +  LV   +     +D 
Sbjct: 239 VNLXV-TVGNE--YVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDW 295
Query: 300 SKLQLRAV----MTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSA 355
           S L++ A     +           ++ +   P ++  + +G TE +C  +T   P     
Sbjct: 296 SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTE-ACPXVTTNPPLRLD- 353
Query: 356 GSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA------ 409
             K  + G    ++E+K I+ E G+ L     GE+ +R   + +GY+  E+E        
Sbjct: 354 --KSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYD 411
Query: 410 -------RT-----IDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAI 457
                  RT     ID+ G+LH                   KE+IKYKG+ +AP ELEA+
Sbjct: 412 EKGRKFFRTGDVGFIDEEGFLH--------------FQDRVKEVIKYKGYTIAPFELEAL 457
Query: 458 LLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP--NAKESEDDIMDFVASNVATYKKVRVL 515
           L  H +V D AV+  PDEEAGE+P A +V+ P    K  E+DI+++V   ++ YK+VR +
Sbjct: 458 LXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREV 517
Query: 516 HFVDGIPKSHSGKIMRRILKDKMLE 540
            FV+ +P++ SGK++RR+L++K  E
Sbjct: 518 EFVEELPRTASGKLLRRLLREKEAE 542

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 127/501 (25%), Positives = 222/501 (44%), Gaps = 41/501 (8%)
Query: 54  AFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG 113
           A+VE  +    TYAQ+       A  L +LG+ KG  V +++PN  E+  +  G    G 
Sbjct: 34  AYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGA 93
Query: 114 VFSGANPTAHASELKKQVDAADAKLIV---SYAPIYEKVKGLGLPIIVLGE--------E 162
           V    N    A E+   +  + +K+++     AP+ + ++    P   + +        E
Sbjct: 94  VAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAE 153
Query: 163 RIESAINWSELIEAADKAGNNFSNDDDV----KQTDLWISKGVMLTHRNLVANLCSTLFS 218
           R+ SA        AAD+       DD++            KGV+ TH + V +  S+  S
Sbjct: 154 RLRSA--------AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHES-VHSAASSWAS 204
Query: 219 VVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFA 278
            +         L L P FH+  +T +  + +R    ++ M +F+       ++   V   
Sbjct: 205 TIDVRYRDRLLLPL-PMFHVAALTTVIFSAMRGV-TLISMPQFDATKVWSLIVEERVCIG 262
Query: 279 PIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLT 338
             VP I+  + + P   E D      R  +T            +  K   ++V + Y LT
Sbjct: 263 GAVPAILNFMRQVPEFAELDAP--DFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALT 318
Query: 339 EHSCI--TLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQC 396
           E SC   TL   + A   AGS   +  F   ++ V+  +      +  +  GE+ ++S  
Sbjct: 319 E-SCGGGTLLLSEDALRKAGSAGRATMFT--DVAVRGDD----GVIREHGEGEVVIKSDI 371
Query: 397 VMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEA 456
           +++ Y+N  E T    D NGW  T                  K++I   G  V PAE+E+
Sbjct: 372 LLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIES 430
Query: 457 ILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLH 516
           +++  P V + AV+ LPDE+ GEI AA VV + N + SE  I+++  + +A YK  + + 
Sbjct: 431 VIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQN-EVSEQQIVEYCGTRLARYKLPKKVI 489
Query: 517 FVDGIPKSHSGKIMRRILKDK 537
           F + IP++ +GKI++ +L+++
Sbjct: 490 FAEAIPRNPTGKILKTVLREQ 510

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 124/529 (23%), Positives = 231/529 (43%), Gaps = 24/529 (4%)
Query: 28  PAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAY--TYAQVARDTRGFAKALRSLGL 85
           P+  + E + L DF+ + A L+  K       +G+ +  TYA+V +  R     LR+LG+
Sbjct: 10  PSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGV 69
Query: 86  RKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV---SY 142
             G  V  +  N   +      +   G V   ANP     E+   ++ A+ K+++   + 
Sbjct: 70  GVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNL 129
Query: 143 APIYEKVKGLGLPI---IVLGEERIESAINWSE-LIEAAD--KAGNNFSNDDDVKQTDLW 196
            P+ E ++G    +   +V+ E+  E  + + E L E AD  +     +           
Sbjct: 130 LPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTG 189
Query: 197 ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVV 256
           + KGV+ +HR LV +  +        +  +   L ++P FH+        ATL    +V+
Sbjct: 190 LPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVL 249
Query: 257 MMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXX 316
              R +  + ++      VTF   VP + L+L     ++        LR ++        
Sbjct: 250 PGPRLDPASLVELFDGEGVTFTAGVPTVWLALAD--YLESTGHRLKTLRRLVVGGSAAPR 307
Query: 317 XXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSK------KNSVGFILPNLE 370
              + FE+   GV+V++ YGLTE S + +     ++  + S+      K   G  +P + 
Sbjct: 308 SLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVR 365
Query: 371 VKFINPETGKSLPSNTP--GELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXX 428
           ++  + E G+ +P +    GE+ ++   +  GYY NEE T   +  +G+  T        
Sbjct: 366 LRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424
Query: 429 XXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMN 488
                     K+LIK  G  ++  +LE  L+ HP V++AAVV++P  +  E P A VV  
Sbjct: 425 EGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR 484
Query: 489 PNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
                 E+     + +  A ++      F + IP++ +GK ++R L+++
Sbjct: 485 GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQ 533

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 122/496 (24%), Positives = 210/496 (42%), Gaps = 35/496 (7%)
Query: 56  VEAVSGKAYTYAQ-VARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV 114
           +E  +G   +YA+ VAR  R  A  L + GL+ G  V        E  ++ L  + AGGV
Sbjct: 21  IETAAGDKISYAELVARAGR-VANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79
Query: 115 FSGANPTAHASELKKQVDAADAKLIV-------SYAPIYEKVKGLGLPIIVLGEERIESA 167
           +   N      EL   +  A+ K++V         A I  KV   G  +  LG +   S 
Sbjct: 80  YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV---GATVETLGPDGRGSL 136
Query: 168 INWSELIEAA----DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTL--FSVVP 221
            + +     A    D+  ++ +       T    SKG  L+H NL +N  + +  +   P
Sbjct: 137 TDAAAGASEAFATIDRGADDLAAILYTSGT-TGRSKGAXLSHDNLASNSLTLVDYWRFTP 195
Query: 222 EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIV 281
           + +     +  +P +H +G+      TL  +G  + + +F+    LD  +    T    V
Sbjct: 196 DDV----LIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGV 249
Query: 282 PPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHS 341
           P     L++ P + +   +    R  ++            +  K  G  V E YG TE +
Sbjct: 250 PTFYTRLLQSPRLTK--ETTGHXRLFISGSAPLLADTHREWSAK-TGHAVLERYGXTETN 306
Query: 342 CITLTYGDPANPSAGSK-KNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQG 400
             T      +NP  G +   +VG  LP +  +  +PETGK LP    G + V+   V +G
Sbjct: 307 XNT------SNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKG 360
Query: 401 YYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLT 460
           Y+   E+T      +G+  T                  K+L+   GF V P E+E+ +  
Sbjct: 361 YWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDA 420
Query: 461 HPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDG 520
            P V ++AV+ +P  + GE   A VV +  A   E  ++  +   +A +K  + + FVD 
Sbjct: 421 XPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKXPKKVIFVDD 480
Query: 521 IPKSHSGKIMRRILKD 536
           +P++  GK+ + +L++
Sbjct: 481 LPRNTXGKVQKNVLRE 496

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score =  112 bits (279), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 132/528 (25%), Positives = 210/528 (39%), Gaps = 61/528 (11%)
Query: 34  ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIV 93
            + TL D   ++A L+ D+ AF+  V G   T+          A  L   G+  G  V +
Sbjct: 4   HDFTLADVYRRNAALFPDRTAFM--VDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAI 61
Query: 94  VLPNVAEY----GIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKV 149
           +  N +E     G VAL     G +    N   +A E+   +      ++V+     + V
Sbjct: 62  LSQNCSEMIELIGAVAL----IGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIV 117
Query: 150 KGLGLPIIVLGEERIESAINWSELIEAADKAG-----NNFSNDDDVKQTDLWISKGVMLT 204
            G+ LP   LG  +   AI         D +G      + ++D      +   + G ++ 
Sbjct: 118 AGV-LP--SLGGVKKAYAIG--------DGSGPFAPFKDLASDTPFSAPEFGAADGFVII 166
Query: 205 HRNLVANLC-STLFSVVPEMIGQVT------------TLGLIPFFHIYGITGICCATLRN 251
           H   V       L S    +I Q +             LG++P FH+ G+ G+     + 
Sbjct: 167 HTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGL-GLMLTLQQA 225
Query: 252 KGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXX 311
            G  V+  +F+       +  H+VT      P++ +     I+D+   +  QL ++    
Sbjct: 226 GGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN-----ILDQ--AAPAQLASLRAVT 278
Query: 312 XXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITL--TYGDPANPSAGSKKNSVGFILPNL 369
                     FE   P       +G +E S ++    Y D        +  S G  L   
Sbjct: 279 GLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRD--------RPKSAGRPLFWR 330
Query: 370 EVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXX 429
            V  ++ E  + LP    GE+ +R   V +GY+NN   T     +NGW HT         
Sbjct: 331 TVAVVDAED-RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDAD 388
Query: 430 XXXXXXXXX--KELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVM 487
                      KELIK  G  V PAE+E  L  HP++ DA V+ +PD +  E   A  V 
Sbjct: 389 GYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVC 448
Query: 488 NPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
            P    + D + +FVAS +A YKK + + FV+ +PK   G I R  +K
Sbjct: 449 KPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVK 496

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 98.6 bits (244), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 124/528 (23%), Positives = 212/528 (40%), Gaps = 42/528 (7%)
Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRG--FAKALRSLGLRKGQVVIVV 94
           T  D +   A  Y D++A         ++Y ++  DTR    A   + LG+++   V+V 
Sbjct: 26  TFGDLLRDRAAKYGDRIAIT--CGNTHWSYREL--DTRADRLAAGFQKLGIQQKDRVVVQ 81
Query: 95  LPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV--------SYAPIY 146
           LPN+ E+  V   +   G +   A P+  +SE+    + A+A   +         Y  + 
Sbjct: 82  LPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLA 141
Query: 147 EKVKGLGLP----IIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTD---LWISK 199
            +V+   LP    IIV GE   E  +   +L     K     S+D    Q       +SK
Sbjct: 142 RQVQS-KLPTLKNIIVAGE--AEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSK 198
Query: 200 GVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIY-----GITGICCATLRNKGK 254
            +  TH + + +L  ++   V  +      L  +P  H Y     G+ G+  A     G+
Sbjct: 199 LIPRTHDDYIYSLKRSV--EVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAG----GR 252
Query: 255 VVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXX 314
           VV+            +   +VT   +VPP+ +  +        DLS LQ   V+      
Sbjct: 253 VVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQ---VLQVGGAK 309
Query: 315 XXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFI 374
                +   K   G  +Q+ +G+ E         DP      ++   +    P  E +  
Sbjct: 310 FSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMS---PYDESRVW 366
Query: 375 NPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXX 434
           +       P  T G L  R    ++GYY  EE  A +  ++G+  T              
Sbjct: 367 DDHDRDVKPGET-GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425
Query: 435 XXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES 494
               K+ I   G +VA  E+E  LL HP+V DAA+VS+PD+  GE     ++    A ++
Sbjct: 426 EGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKA 485
Query: 495 EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 542
            +         +A YK    + FV+  P++  GK+ ++ L++ + EK+
Sbjct: 486 AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 147/343 (42%), Gaps = 18/343 (5%)
Query: 199 KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM 258
           KG ++  R L   L +   +   +  G+   +  +P FH++G+       LR  G V  +
Sbjct: 171 KGAVIPRRALATTLDA--LADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL 228
Query: 259 NRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXX 318
            RF        L         +  P +   + + +  + +L+K  L              
Sbjct: 229 GRFSTEGAARELNDGATMLFGV--PTMYHRIAETLPADPELAK-ALAGARLLVSGSAALP 285
Query: 319 XSSFEK--KFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINP 376
               E+     G +V E YG+TE    T    D   P AG+    VG  LP +E++ +  
Sbjct: 286 VHDHERIAAATGRRVIERYGMTETLMNTSVRAD-GEPRAGT----VGVPLPGVELRLVE- 339
Query: 377 ETGK---SLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXX-XX 432
           E G    +L   + GE+ VR   +   Y N  + TA    ++G+  T             
Sbjct: 340 EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVR 399
Query: 433 XXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGE-IPAACVVMNPNA 491
                  +LIK  G+++   E+E  LL HP V +AAV   PD + GE I A  V  +P A
Sbjct: 400 IVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA 459
Query: 492 KESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
             +   + D VA+ +A +K+ RV+ ++D +P++  GKIM+R L
Sbjct: 460 PPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRAL 502

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 117/524 (22%), Positives = 230/524 (43%), Gaps = 74/524 (14%)
Query: 59  VSGKA----YTYAQVARDTRGFAKALR-SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG 113
           V+GK     + + +++ +++  A  L  + GL++G  V VVLP V E+ +V LG + AG 
Sbjct: 65  VNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGL 124
Query: 114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----LPI-IVLGEERIESA 167
           +F        ++++  ++  + AK IV+   + ++V  +      L I +++ E+  +  
Sbjct: 125 IFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGW 184
Query: 168 INWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQ- 226
           +N+ +L+  A    +        + + ++ + G                 S +P+M    
Sbjct: 185 LNFKKLLNEASTTHHCVETGSQ-EASAIYFTSGT----------------SGLPKMAEHS 227
Query: 227 VTTLGLIPFFHIYGITGICCA----TLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVP 282
            ++LGL       G TG+  +    T+ + G ++ +    L + ++       TF  ++P
Sbjct: 228 YSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNI----LCSLMEPWALGACTFVHLLP 282
Query: 283 ---PIIL----------SLVKDPIVDEF----DLSKLQLRAVMTXXXXXXXXXXSSFE-- 323
              P+++          S++  PIV       DLS  +   +             + E  
Sbjct: 283 KFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENW 342
Query: 324 KKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLP 383
           +   G+ ++E+YG TE     +      + +   K   +G      +V+ I+ + G  LP
Sbjct: 343 RAQTGLDIRESYGQTETGLTCMV-----SKTMKIKPGYMGTAASCYDVQIID-DKGNVLP 396
Query: 384 SNTPGELCVRSQ-----CVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXX 438
             T G++ +R +      +  GY +N ++TA  I  + WL                    
Sbjct: 397 PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRA 455
Query: 439 KELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV-----MNPNAKE 493
            ++I   G+++ P+E+E  L+ HP+V + AV+S PD   GE+  A VV     ++ + ++
Sbjct: 456 DDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQ 515
Query: 494 SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
              ++   V S  A YK  R + FV  +PK+ +GKI R  L+DK
Sbjct: 516 LTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 117/524 (22%), Positives = 230/524 (43%), Gaps = 74/524 (14%)
Query: 59  VSGKA----YTYAQVARDTRGFAKALR-SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG 113
           V+GK     + + +++ +++  A  L  + GL++G  V VVLP V E+ +V LG + AG 
Sbjct: 65  VNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGL 124
Query: 114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----LPI-IVLGEERIESA 167
           +F        ++++  ++  + AK IV+   + ++V  +      L I +++ E+  +  
Sbjct: 125 IFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGW 184
Query: 168 INWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQ- 226
           +N+ +L+  A    +        + + ++ + G                 S +P+M    
Sbjct: 185 LNFKKLLNEASTTHHCVETGSQ-EASAIYFTSGT----------------SGLPKMAEHS 227
Query: 227 VTTLGLIPFFHIYGITGICCA----TLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVP 282
            ++LGL       G TG+  +    T+ + G ++ +    L + ++       TF  ++P
Sbjct: 228 YSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNI----LCSLMEPWALGACTFVHLLP 282
Query: 283 ---PIIL----------SLVKDPIVDEF----DLSKLQLRAVMTXXXXXXXXXXSSFE-- 323
              P+++          S++  PIV       DLS  +   +             + E  
Sbjct: 283 KFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENW 342
Query: 324 KKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLP 383
           +   G+ ++E+YG TE     +      + +   K   +G      +V+ I+ + G  LP
Sbjct: 343 RAQTGLDIRESYGQTETGLTCMV-----SKTMKIKPGYMGTAASCYDVQIID-DKGNVLP 396
Query: 384 SNTPGELCVRSQ-----CVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXX 438
             T G++ +R +      +  GY +N ++TA  I  + WL                    
Sbjct: 397 PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRA 455
Query: 439 KELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV-----MNPNAKE 493
            ++I   G+++ P+E+E  L+ HP+V + AV+S PD   GE+  A VV     ++ + ++
Sbjct: 456 DDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQ 515
Query: 494 SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
              ++   V S  A YK  R + FV  +PK+ +GKI R  L+DK
Sbjct: 516 LTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 118/549 (21%), Positives = 225/549 (40%), Gaps = 66/549 (12%)
Query: 32  VPENVTLPDFVLQDAELYA----DKVAFV---EAVSGKAYTYAQVARDTRGFAKALRSLG 84
           VPEN    +F     ++YA    +K+A +   +  + K +T+  +   +   A      G
Sbjct: 51  VPENF---NFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHG 107
Query: 85  LRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAP 144
           + KG  V++ L +  ++    LG+   G +   A       ++  +++ A  K+IV  A 
Sbjct: 108 IGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAE 167
Query: 145 ---------IYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDL 195
                     + +   + L    +G + +E  I++ + +E +       + +   K  D+
Sbjct: 168 DDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDI 227
Query: 196 ---WISKGV-----MLTHRNL--VANLCSTLFSVVPEMIGQVTTL-----GLIPFFHIYG 240
              + S G      M+ H N   + ++ +  +    E  G   T+     G   +  +YG
Sbjct: 228 CLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYG 287
Query: 241 ITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLS 300
                CA       V   +RFE +  L+    + VT     P I   L+K+      DLS
Sbjct: 288 QWIAGCAVF-----VYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE------DLS 336
Query: 301 KLQLRAVMTXXXXXXXXXXSSFEK--KFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSK 358
                 +              F +  +F G+++ E +G TE      T+     P    K
Sbjct: 337 HYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF-----PWMEPK 391
Query: 359 KNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQG-------YYNNEEETART 411
             S+G   P  +++ ++ + G+       GE+ + +   M+G       +Y  + E    
Sbjct: 392 PGSIGKPTPGYKIELMDRD-GRLCEVGEEGEIVINT---MEGKPVGLFVHYGKDPERTEE 447
Query: 412 IDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS 471
              +G+ HT                   ++IK  G++V P E+E+ L+ HP+V + A+  
Sbjct: 448 TWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITG 507
Query: 472 LPDEEAGEIPAACVVMNPNAKESE---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGK 528
           +PD   G++  A +V+  +   S+   +++ D V +  A YK  R++ FV  +PK+ SGK
Sbjct: 508 VPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGK 567
Query: 529 IMRRILKDK 537
           I R  ++DK
Sbjct: 568 IRRVEIRDK 576

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 143/346 (41%), Gaps = 18/346 (5%)
Query: 198 SKGVMLTHRNLVANLCSTL--FSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV 255
           S G ML+H NL +N  + +  +   P+ +     +  +P +H +G+      TL  +G +
Sbjct: 170 SXGAMLSHDNLASNSLTLVDYWRFTPDDV----LIHALPIYHTHGLFVASNVTLFARGSM 225
Query: 256 VMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXX 315
           + +  F+    LD +    V     VP     L++ P +       ++L    +      
Sbjct: 226 IFLPXFDPDXILDLMARATVLMG--VPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLAD 283
Query: 316 XXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSK-KNSVGFILPNLEVKFI 374
                S      G  V E YG+TE +  T      +NP  G +   +VG  LP +  +  
Sbjct: 284 THREWS---AXTGHAVLERYGMTETNMNT------SNPYDGDRVPGAVGPALPGVSARVT 334
Query: 375 NPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXX 434
           +PETG  LP    G + V    V  GY+   E T      +G+  T              
Sbjct: 335 DPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHI 394
Query: 435 XXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES 494
                +L+   GF V P E+E+ +   P V ++AV+ +P  + GE   A VV +  A   
Sbjct: 395 LGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDXGATID 454
Query: 495 EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE 540
           E  ++  +   +A +     + FVD +P++  G +   +L++   +
Sbjct: 455 EAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRETYXD 500

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 142/343 (41%), Gaps = 18/343 (5%)
Query: 198 SKGVMLTHRNLVANLCSTL--FSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV 255
           S G ML+H NL +N  + +  +   P+ +     +  +P +H +G+      TL  +G +
Sbjct: 170 SXGAMLSHDNLASNSLTLVDYWRFTPDDV----LIHALPIYHTHGLFVASNVTLFARGSM 225
Query: 256 VMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXX 315
           + +  F+    LD +    V     VP     L++ P +       ++L    +      
Sbjct: 226 IFLPXFDPDXILDLMARATVLMG--VPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLAD 283
Query: 316 XXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSK-KNSVGFILPNLEVKFI 374
                S      G  V E YG+TE +  T      +NP  G +   +VG  LP +  +  
Sbjct: 284 THREWS---AXTGHAVLERYGMTETNMNT------SNPYDGDRVPGAVGPALPGVSARVT 334
Query: 375 NPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXX 434
           +PETG  LP    G + V    V  GY+   E T      +G+  T              
Sbjct: 335 DPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHI 394
Query: 435 XXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES 494
                +L+   GF V P E+E+ +   P V ++AV+ +P  + GE   A VV+      S
Sbjct: 395 LGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPS 454
Query: 495 EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
           E  ++  +   +A +     + FVD +P++  G +   +L++ 
Sbjct: 455 EAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRET 497

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 144/346 (41%), Gaps = 21/346 (6%)
Query: 198 SKGVMLTHRNLVANLCSTL--FSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV 255
           S G ML+H NL +N  + +  +   P+ +     +  +P +H +G+      TL  +G +
Sbjct: 170 SXGAMLSHDNLASNSLTLVDYWRFTPDDV----LIHALPIYHTHGLFVASNVTLFARGSM 225
Query: 256 VMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXX 315
           + +  F+    LD +    V     VP     L++ P +       ++L    +      
Sbjct: 226 IFLPXFDPDXILDLMARATVLMG--VPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLAD 283
Query: 316 XXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSK-KNSVGFILPNLEVKFI 374
                S      G  V E YG+TE +  T      +NP  G +   +VG  LP +  +  
Sbjct: 284 THREWS---AXTGHAVLERYGMTETNMNT------SNPYDGDRVPGAVGPALPGVSARVT 334
Query: 375 NPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXX 434
           +PETG  LP    G + V    V  GY+   E T      +G+  T              
Sbjct: 335 DPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHI 394
Query: 435 XXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES 494
                +L+   GF V P E+E+ +   P V ++AV+ +P  + GE   A VV+      S
Sbjct: 395 LGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPS 454
Query: 495 E---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
           E   +++  FV   +A +     + FVD +P++  G +   +L++ 
Sbjct: 455 EILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRET 500

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 124/528 (23%), Positives = 206/528 (39%), Gaps = 42/528 (7%)
Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRG--FAKALRSLGLRKGQVVIVV 94
           T  D +   A  Y D++A         ++Y ++  DTR    A   + LG+++   V+V 
Sbjct: 26  TFGDLLRDRAAKYGDRIAIT--CGNTHWSYREL--DTRADRLAAGFQKLGIQQKDRVVVQ 81
Query: 95  LPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV--------SYAPIY 146
           LPN+ E+  V   +   G +   A P+  +SE+    + A+A   +         Y  + 
Sbjct: 82  LPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLA 141
Query: 147 EKVKGLGLP----IIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTD---LWISK 199
            +V+   LP    IIV GE   E  +   +L     K     S+D    Q       +SK
Sbjct: 142 RQVQS-KLPTLKNIIVAGE--AEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSK 198
Query: 200 GVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIY-----GITGICCATLRNKGK 254
            +  TH + + +L  ++   V  +      L  +P  H Y     G+ G+  A     G+
Sbjct: 199 LIPRTHDDYIYSLKRSV--EVCWLDHSTVYLAALPXAHNYPLSSPGVLGVLYAG----GR 252
Query: 255 VVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXX 314
           VV+            +   +VT   +VPP+             DLS LQ   V+      
Sbjct: 253 VVLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQ---VLQVGGAK 309
Query: 315 XXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFI 374
                +   K   G  +Q+ +G  E         DP      ++        P  E +  
Sbjct: 310 FSAEAARRVKAVFGCTLQQVFGXAEGLVNYTRLDDPEEIIVNTQGKPXS---PYDESRVW 366
Query: 375 NPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXX 434
           +       P  T G L  R    ++GYY  EE  A +  ++G+  T              
Sbjct: 367 DDHDRDVKPGET-GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425
Query: 435 XXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES 494
               K+ I   G +VA  E+E  LL HP+V DAA VS PD+  GE     ++    A ++
Sbjct: 426 EGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPKA 485
Query: 495 EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 542
            +         +A YK    + FV+  P++  GK+ ++ L++ + EK+
Sbjct: 486 AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 117/522 (22%), Positives = 215/522 (41%), Gaps = 45/522 (8%)
Query: 41  FVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAE 100
           ++ +  E  A K A+++       TY ++    R FA ALR+LG+   + +++V+ +   
Sbjct: 28  YLFRLNETRAGKTAYIDDTGST--TYGELEERARRFASALRTLGVHPEERILLVMLDTVA 85
Query: 101 YGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-------G 153
             +  LG + AG V   AN     ++    +  + A+ +++   + + V          G
Sbjct: 86  LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDG 145
Query: 154 LPIIVLGEERIESAIN--WSELIEAADKAGNNFSND-DDVKQTDLWI--------SKGVM 202
             +IV      E  +   + ELI+AA  A    +   DD+     W+         KG +
Sbjct: 146 CQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIA---FWLYSSGSTGKPKGTV 202
Query: 203 LTHRNL--VANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGI-TGICCATLRNKGKVVMMN 259
            TH NL   A L +     + E             F  YG+  G+          ++M  
Sbjct: 203 HTHANLYWTAELYAKPILGIAE---NDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE 259
Query: 260 RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXX 319
           R    A    L+ H  T    VP +  +++  P +     + + +R   +          
Sbjct: 260 RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPA--RADVAIRICTSAGEALPREIG 317
Query: 320 SSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG 379
             F   F G ++ +  G TE   I L+     N +   +  + G  +P  E++ +  E G
Sbjct: 318 ERFTAHF-GCEILDGIGSTEMLHIFLS-----NRAGAVEYGTTGRPVPGYEIE-LRDEAG 370
Query: 380 KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXK 439
            ++P    G+L ++       Y+NN E++ R      W+ +                   
Sbjct: 371 HAVPDGEVGDLYIKGPSAAVMYWNNREKS-RATFLGEWIRSGDKYCRLPNGCYVYAGRSD 429
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPA-ACVVMNPNAKESE--- 495
           +++K  G  V+P E+E +L+ H +V +AAVV +  +  G +   A VV+      SE   
Sbjct: 430 DMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV--DHGGLVKTRAFVVLKREFAPSEILA 487
Query: 496 DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
           +++  FV   +A +K  R + FVD +PK+ +GKI R  L+++
Sbjct: 488 EELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 121/511 (23%), Positives = 200/511 (39%), Gaps = 20/511 (3%)
Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           T+ + + + A    D  A      G   T+A++       A  L + GLR  Q V VV P
Sbjct: 3   TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAAD--AKLIVSYAPIYEKV--KGL 152
           N A+  I  L +   G V +  NP   ++EL + +   +  A +I     + + +   G 
Sbjct: 63  NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 153 GLPIIVLGE-ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVAN 211
           G  II LG+  R     ++   IE   +     +       T   + K  ++  R   + 
Sbjct: 123 GARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTT-GLPKAAIIPQRAAESR 181
Query: 212 LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI 271
           +      V          LGL+P +H+ G   +  A L   G  V++  F     L  + 
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQ 241
Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQV 331
             +VT     P  + +L          L    LR V             +  +  PG +V
Sbjct: 242 QEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301
Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG--KSLPSNTPGE 389
             AYG TE   +   Y     P  G++  + GF     EV+ +    G  + + +   GE
Sbjct: 302 N-AYGTTE--AMNSLYMR--QPKTGTEM-APGFFS---EVRIVRIGGGVDEIVANGEEGE 352
Query: 390 LCVR-SQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQ 448
           L V  S     GY N  + TA  + ++GW  T                   ++I   G  
Sbjct: 353 LIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGEN 411
Query: 449 VAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV-ASNVA 507
           + P+E+E +L T P V +  V+ L D+  G+   ACVV       S D +  F  +S +A
Sbjct: 412 IHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELA 471
Query: 508 TYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
            +K+ +    +D +PK+   K++RR L  ++
Sbjct: 472 DFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 121/511 (23%), Positives = 199/511 (38%), Gaps = 20/511 (3%)
Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           T+ + + + A    D  A      G   T+A++       A  L + GLR  Q V VV P
Sbjct: 3   TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAAD--AKLIVSYAPIYEKV--KGL 152
           N A+  I  L +   G V +  NP   ++EL + +   +  A +I     + + +   G 
Sbjct: 63  NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 153 GLPIIVLGE-ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVAN 211
           G  II LG+  R     ++   IE   +     +       T   + K  ++  R   + 
Sbjct: 123 GARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTT-GLPKAAIIPQRAAESR 181
Query: 212 LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI 271
           +      V          LGL+P +H+ G   +  A L   G  V++  F     L  + 
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQ 241
Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQV 331
             +VT     P  + +L          L    LR V             +  +  PG +V
Sbjct: 242 QEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301
Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG--KSLPSNTPGE 389
              YG TE   +   Y     P  G++  + GF     EV+ +    G  + + +   GE
Sbjct: 302 N-IYGTTE--AMNSLYMR--QPKTGTEM-APGFFS---EVRIVRIGGGVDEIVANGEEGE 352
Query: 390 LCVR-SQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQ 448
           L V  S     GY N  E TA  + ++GW  T                   ++I   G  
Sbjct: 353 LIVAASDSAFVGYLNQPEATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGEN 411
Query: 449 VAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV-ASNVA 507
           + P+E+E +L T P V +  V+ L D+  G+   ACVV       S D +  F  +S +A
Sbjct: 412 IHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELA 471
Query: 508 TYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
            +K+ +    +D +PK+   K++RR L  ++
Sbjct: 472 DFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 123/545 (22%), Positives = 227/545 (41%), Gaps = 49/545 (8%)
Query: 23  FRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRS 82
           F  R+      +++ L D + + A   +D +A ++    +  +Y ++ +     A +LR 
Sbjct: 14  FARRYREKGYWQDLPLTDILTRHAA--SDSIAVIDG--ERQLSYRELNQAADNLACSLRR 69
Query: 83  LGLRKGQVVIVVLPNVAE-----YGIVALGIMAAGGVFSGANP--TAHASELKKQVDAAD 135
            G++ G+  +V L NVAE     + ++ LG+     +FS       A+AS+++  +  AD
Sbjct: 70  QGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIAD 129
Query: 136 AK--------LIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSND 187
            +         + ++   +  ++ + L +   GE  ++ AIN       A+      S  
Sbjct: 130 RQHALFSGDDFLNTFVTEHSSIRVVQL-LNDSGEHNLQDAIN-----HPAEDFTATPSPA 183
Query: 188 DDVKQTDLWISKGVMLTHRNLVANLCSTLFSV-----VPEMIGQVTTLGLIPFFHIYGIT 242
           D+V    L  S G   T + +        +SV     + +   Q   L  IP  H Y ++
Sbjct: 184 DEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMS 241
Query: 243 GICCATLRNKGKVVMMNRFELRAFLDALI-THEVTFAPIVPPIILSLVKDPIVDEFDLSK 301
                 +   G  V++           LI  H+V    +VPP +   ++  I  E   S+
Sbjct: 242 SPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGE---SR 298
Query: 302 LQLRAVMTXXXXXXXXXXSSFEKKFP---GVQVQEAYGLTEHSCITLTYGDPANPSAGSK 358
            QL A +           ++   + P   G Q+Q+ +G+ E   +  T  D    SA   
Sbjct: 299 AQL-ASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAE-GLVNYTRLDD---SAEKI 353
Query: 359 KNSVGF-ILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGW 417
            ++ G+ + P+ EV   + E G  LP    G L  R     +GYY + +  A   D NG+
Sbjct: 354 IHTQGYPMCPDDEVWVADAE-GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGF 412
Query: 418 LHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEA 477
             +                  K+ I   G ++A  E+E +LL HP+V  AA+VS+ DE  
Sbjct: 413 YCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELM 472
Query: 478 GEIPAACVVMNPNAKESEDDIMDFV-ASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
           GE   A +V+    +  +  +  F+    +A +K    +  VD +P +  GK+ ++ L+ 
Sbjct: 473 GEKSCAYLVVKEPLRAVQ--VRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQ 530
Query: 537 KMLEK 541
            +  +
Sbjct: 531 WLASR 535

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 120/511 (23%), Positives = 199/511 (38%), Gaps = 20/511 (3%)
Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           T+ + + + A    D  A      G   T+A++       A  L + GLR  Q V VV P
Sbjct: 3   TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAAD--AKLIVSYAPIYEKV--KGL 152
           N A+  I  L +   G V +  NP   ++EL + +   +  A +I     + + +   G 
Sbjct: 63  NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 153 GLPIIVLGE-ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVAN 211
           G  II LG+  R     ++   IE   +     +       T   + K  ++  R   + 
Sbjct: 123 GARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTT-GLPKAAIIPQRAAESR 181
Query: 212 LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI 271
           +      V          LGL+P +H+ G   +  A L   G  V++  F     L  + 
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQ 241
Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQV 331
             +VT     P  + +L          L    LR V             +  +  PG +V
Sbjct: 242 QEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301
Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG--KSLPSNTPGE 389
              YG TE   +   Y     P  G++  + GF     EV+ +    G  + + +   GE
Sbjct: 302 N-GYGTTE--AMNSLYMR--QPKTGTEM-APGFFS---EVRIVRIGGGVDEIVANGEEGE 352
Query: 390 LCVR-SQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQ 448
           L V  S     GY N  + TA  + ++GW  T                   ++I   G  
Sbjct: 353 LIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGEN 411
Query: 449 VAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV-ASNVA 507
           + P+E+E +L T P V +  V+ L D+  G+   ACVV       S D +  F  +S +A
Sbjct: 412 IHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELA 471
Query: 508 TYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
            +K+ +    +D +PK+   K++RR L  ++
Sbjct: 472 DFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 120/511 (23%), Positives = 199/511 (38%), Gaps = 20/511 (3%)
Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           T+ + + + A    D  A      G   T+A++       A  L + GLR  Q V VV P
Sbjct: 3   TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAAD--AKLIVSYAPIYEKV--KGL 152
           N A+  I  L +   G V +  NP   ++EL + +   +  A +I     + + +   G 
Sbjct: 63  NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 153 GLPIIVLGE-ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVAN 211
           G  II LG+  R     ++   IE   +     +       T   + K  ++  R   + 
Sbjct: 123 GARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTT-GLPKAAIIPQRAAESR 181
Query: 212 LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI 271
           +      V          LGL+P +H+ G   +  A L   G  V++  F     L  + 
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQ 241
Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQV 331
             +VT     P  + +L          L    LR V             +  +  PG +V
Sbjct: 242 QEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301
Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG--KSLPSNTPGE 389
              YG TE   +   Y     P  G++  + GF     EV+ +    G  + + +   GE
Sbjct: 302 N-IYGTTE--AMNSLYMR--QPKTGTEM-APGFFS---EVRIVRIGGGVDEIVANGEEGE 352
Query: 390 LCVR-SQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQ 448
           L V  S     GY N  + TA  + ++GW  T                   ++I   G  
Sbjct: 353 LIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGEN 411
Query: 449 VAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV-ASNVA 507
           + P+E+E +L T P V +  V+ L D+  G+   ACVV       S D +  F  +S +A
Sbjct: 412 IHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELA 471
Query: 508 TYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
            +K+ +    +D +PK+   K++RR L  ++
Sbjct: 472 DFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 120/511 (23%), Positives = 199/511 (38%), Gaps = 20/511 (3%)
Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           T+ + + + A    D  A      G   T+A++       A  L + GLR  Q V VV P
Sbjct: 3   TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAAD--AKLIVSYAPIYEKV--KGL 152
           N A+  I  L +   G V +  NP   ++EL + +   +  A +I     + + +   G 
Sbjct: 63  NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 153 GLPIIVLGE-ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVAN 211
           G  II LG+  R     ++   IE   +     +       T   + K  ++  R   + 
Sbjct: 123 GARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTT-GLPKAAIIPQRAAESR 181
Query: 212 LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI 271
           +      V          LGL+P +H+ G   +  A L   G  V++  F     L  + 
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQ 241
Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQV 331
             +VT     P  + +L          L    LR V             +  +  PG +V
Sbjct: 242 QEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301
Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG--KSLPSNTPGE 389
              YG TE   +   Y     P  G++  + GF     EV+ +    G  + + +   GE
Sbjct: 302 N-IYGTTE--AMNSLYMR--QPKTGTEM-APGFFS---EVRIVRIGGGVDEIVANGEEGE 352
Query: 390 LCVR-SQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQ 448
           L V  S     GY N  + TA  + ++GW  T                   ++I   G  
Sbjct: 353 LIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGEN 411
Query: 449 VAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV-ASNVA 507
           + P+E+E +L T P V +  V+ L D+  G+   ACVV       S D +  F  +S +A
Sbjct: 412 IHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELA 471
Query: 508 TYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
            +K+ +    +D +PK+   K++RR L  ++
Sbjct: 472 DFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 190/497 (38%), Gaps = 20/497 (4%)
Query: 51  DKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA 110
           D  A      G   T+A++       A  L + GLR  Q V VV PN A+  I  L +  
Sbjct: 17  DHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHR 76
Query: 111 AGGVFSGANPTAHASELKKQVDAAD--AKLIVSYAPIYEKV--KGLGLPIIVLGE-ERIE 165
            G V +  NP   ++EL + +   +  A +I     + + +   G G  II LG+  R  
Sbjct: 77  LGAVPALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDG 136
Query: 166 SAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIG 225
              ++   IE   +     +       T   + K  ++  R   + +      V      
Sbjct: 137 EPYSYGPPIEDPQREPAQPAFIFYTSGTT-GLPKAAIIPQRAAESRVLFXSTQVGLRHGR 195
Query: 226 QVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPII 285
               LGL P +H+ G   +  A L   G  V++  F     L  +   +VT     P  +
Sbjct: 196 HNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHL 255
Query: 286 LSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITL 345
            +L          L    LR V             +  +  PG +V   YG TE      
Sbjct: 256 DALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVN-IYGTTEAXNSLY 314
Query: 346 TYGDPANPSAGSKKNSVGFILPNLEVKFINPETG--KSLPSNTPGELCVR-SQCVMQGYY 402
                  P  G++  + GF     EV+ +    G  + + +   GEL V  S     GY 
Sbjct: 315 XR----QPKTGTEX-APGFFS---EVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYL 366
Query: 403 NNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHP 462
           N  + TA  + ++GW  T                   + I   G  + P+E+E +L T P
Sbjct: 367 NQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAP 425
Query: 463 SVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV-ASNVATYKKVRVLHFVDGI 521
            V +  V+ L D+  G+   ACVV       S D +  F  +S +A +K+ +    +D +
Sbjct: 426 GVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQL 485
Query: 522 PKSHSGKIMRRILKDKM 538
           PK+   K++RR L  ++
Sbjct: 486 PKNALNKVLRRQLVQQV 502

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 109/495 (22%), Positives = 200/495 (40%), Gaps = 34/495 (6%)
Query: 62  KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPT 121
           +  +Y ++ R +   A  L   GL KG   +V LPNVAE+ IV   ++ AG V   A  +
Sbjct: 54  RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYS 113
Query: 122 AHASELKKQVDAADAKLIV--------SYAPIYEKVKGLGL-PIIVLGEERIESAINWSE 172
               EL   +     KL++        S     + +  + L P I+L      +     +
Sbjct: 114 HRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLD 173
Query: 173 LIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSV--VPEMIG---QV 227
            IE   +   +FS+    +     +S G   T + +        +SV    E+ G     
Sbjct: 174 WIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNT 233
Query: 228 TTLGLIPFFHIYGITGI-CCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIIL 286
             L  +P  H + ++       L   G VVM    E       +  H+V  A +VP  ++
Sbjct: 234 RLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVI 293
Query: 287 SLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGV---QVQEAYGLTEHSCI 343
             ++     +  +  L+L  V             S  ++ P V   ++Q+ +G+ E   +
Sbjct: 294 MWLEKAAQYKDQIQSLKLLQV------GGASFPESLARQVPEVLNCKLQQVFGMAE-GLV 346
Query: 344 TLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYN 403
             T  D ++    + +     I  + E+K ++ E  + +P    G L  R      GYY 
Sbjct: 347 NYTRLDDSDEQIFTTQGRP--ISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQ 403
Query: 404 NEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPS 463
           + E  ++  D++ + ++                  K+ I   G ++A  E+E ++L HP 
Sbjct: 404 SPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPE 463
Query: 464 VEDAAVVSLPDEEAGEIPAACVV-MNPNAKES--EDDIMDFVASNVATYKKVRVLHFVDG 520
           V  AA+V++ DE+ GE   A +V  NP  K       +M+     +A YK    +  ++ 
Sbjct: 464 VMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMEL---GIAQYKLPDQIKLIES 520
Query: 521 IPKSHSGKIMRRILK 535
           +P +  GK+ ++ L+
Sbjct: 521 LPLTAVGKVDKKQLR 535

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 132/305 (43%), Gaps = 21/305 (6%)
Query: 230 LGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLV 289
           L ++P +HI G++ +  A +     V ++++F     L  +    +T   +VP  +  L+
Sbjct: 208 LSVLPIYHISGLSVLLRAVIEGF-TVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLM 266
Query: 290 KDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGD 349
           +  + + ++L K+ L               ++ +   P   +  ++G+TE +C       
Sbjct: 267 QQGLHEPYNLQKILLGGA----KLSATMIETALQYNLP---IYNSFGMTE-TCSQFLTAT 318
Query: 350 PANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA 409
           P    A  + ++VG    N++VK  NP           GEL ++   VM GY    + T 
Sbjct: 319 PEMLHA--RPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTG 370
Query: 410 RTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAV 469
               +NG+ +T                  K+LI   G  + P ++E +    P + DA  
Sbjct: 371 TF--ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVC 428
Query: 470 VSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKI 529
           V  PD+  G++P    V   +  +++  ++ +++ ++A YK  +    VD +P + +GK+
Sbjct: 429 VGHPDDTWGQVPKLYFVSESDISKAQ--LIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKL 486
Query: 530 MRRIL 534
            R  L
Sbjct: 487 QRNKL 491

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED--- 496
           +++   G ++  AE+E+ L+ HP + +AAVV +P    G+   A V +N   + S +   
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577
Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
           ++ ++VA  +       VLH+ D +PK+ SGKIMRRIL+
Sbjct: 578 EVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED--- 496
           +++   G ++  AE+E+ L+ HP + +AAVV +P    G+   A V +N   + S +   
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577
Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
           ++ ++V   +       VLH+ D +PK+ SGKIMRRIL+
Sbjct: 578 EVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED--- 496
           +++   G ++  AE+E+ L+ HP + +AAVV +P    G+   A V +N   + S +   
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577
Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
           ++ ++V   +       VLH+ D +PK+ SGKIMRRIL+
Sbjct: 578 EVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED--- 496
           +++   G ++  AE+E+ L+ HP + +AAVV +P    G+   A V +N   + S +   
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577
Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
           ++ ++V   +       VLH+ D +PK+ SGKIMRRIL+
Sbjct: 578 EVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED--- 496
           +++   G ++  AE+E+ L+ HP + +AAVV +P    G+   A V +N   + S +   
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577
Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
           ++ ++V   +       VLH+ D +PK+ SGKIMRRIL+
Sbjct: 578 EVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED--- 496
           +++   G ++  AE+E+ L+ HP + +AAVV +P    G+   A V +N   + S +   
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577
Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
           ++ ++V   +       VLH+ D +PK+ SGKIMRRIL+
Sbjct: 578 EVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 143/367 (38%), Gaps = 55/367 (14%)
Query: 200 GVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN 259
           G +LT R         +F    + IG +T    +    +YG     CATL  +G     N
Sbjct: 290 GALLTMRYTFDTHQEDVFFTAGD-IGWITGHTYV----VYGPLLYGCATLVFEGTPAYPN 344
Query: 260 RFELRAFLDALITHEVTFAPIVPPIILSLVK---DPIVDEFDLSKLQLRAVMTXXXXXXX 316
                 + D +  H+VT    V P  L L+K   D  ++   L  L+    +        
Sbjct: 345 ---YSRYWDIIDEHKVT-QFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEV 400
Query: 317 XXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGS----KKNSVGFILPNLEVK 372
               S +     + + + Y  TE     +T      P AG     K  S  F    ++  
Sbjct: 401 WEWYSEKIGKNEIPIVDTYWQTESGSHLVT------PLAGGVTPMKPGSASFPFFGIDAV 454
Query: 373 FINPETGKSL-PSNTPGELCVRSQCVMQGYYNNEEETARTIDKN-------------GWL 418
            ++P TG+ L  S+  G L V++              ARTI KN             G+ 
Sbjct: 455 VLDPNTGEELNTSHAEGVLAVKAAW---------PSFARTIWKNHDRYLDTYLNPYPGYY 505
Query: 419 HTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAG 478
            T                   +++   G +++ AE+EA ++  P V + AVV   D+  G
Sbjct: 506 FTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTG 565
Query: 479 EIPAACVVMNPNAKES---EDDIMDF-------VASNVATYKKVRVLHFVDGIPKSHSGK 528
           +  AA VV+   +  S   +D++ D        V  ++  +   +++  VD +PK+ SGK
Sbjct: 566 QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGK 625
Query: 529 IMRRILK 535
           IMRRIL+
Sbjct: 626 IMRRILR 632

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED--- 496
           +++   G ++  AE+E+ L+ HP + +AAVV +P    G+   A V +N   + S +   
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577
Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
           ++ ++V   +       VLH+ D +PK+ SG IMRRIL+
Sbjct: 578 EVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRILR 616

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 156/384 (40%), Gaps = 40/384 (10%)
Query: 54  AFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG 113
           A+VE  +    TYAQ+       A  L +LG+ KG  V +++PN  E+  +  G    G 
Sbjct: 20  AYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGA 79
Query: 114 VFSGANPTAHASELKKQVDAADAKLIV---SYAPIYEKVKGLGLPIIVLGE--------E 162
           V    N    A E+   +  + +K+++     AP+ + ++    P   + +        E
Sbjct: 80  VAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAE 139
Query: 163 RIESAINWSELIEAADKAGNNFSNDDDV----KQTDLWISKGVMLTHRNLVANLCSTLFS 218
           R+ SA        AAD+       DD++            KGV+ TH + V +  S+  S
Sbjct: 140 RLRSA--------AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHES-VHSAASSWAS 190
Query: 219 VVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFA 278
            +         L L P FH+  +T +  + +R    ++ M +F+       ++   V   
Sbjct: 191 TIDVRYRDRLLLPL-PMFHVAALTTVIFSAMRGV-TLISMPQFDATKVWSLIVEERVCIG 248
Query: 279 PIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLT 338
             VP I+  + + P   E D      R  +T            +  K   ++V + Y LT
Sbjct: 249 GAVPAILNFMRQVPEFAELDAP--DFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALT 304
Query: 339 EHSC--ITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQC 396
           E SC   TL   + A   AGS   +  F   ++ V+  +      +  +  GE+ ++S  
Sbjct: 305 E-SCGGGTLLLSEDALRKAGSAGRATMFT--DVAVRGDD----GVIREHGEGEVVIKSDI 357
Query: 397 VMQGYYNNEEETARTIDKNGWLHT 420
           +++ Y+N  E T    D NGW  T
Sbjct: 358 LLKEYWNRPEATRDAFD-NGWFRT 380

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 100/491 (20%), Positives = 188/491 (38%), Gaps = 38/491 (7%)
Query: 60  SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGAN 119
           SG+  +Y ++  +    A+ L+  G  KG VV +      E  I  LG++ AG  +   +
Sbjct: 486 SGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVD 545
Query: 120 PTAHASELKKQVDAADAKLIVSYAPIYEKVKGL---GLPIIVLGEERIE-SAINWSELIE 175
           P      +   +  + A  ++++  + E+   L   G  + +  + R E  A + +  I+
Sbjct: 546 PKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAID 605
Query: 176 AADKAGNNFSNDDDVKQTDLWISKGVMLTHRN---LVANLCSTLFSVVPEMIGQVTTLGL 232
             D A   +++    K       KG + TH N   LV ++    FS     +  V+    
Sbjct: 606 PNDPAYIMYTSGTTGK------PKGNITTHANIQGLVKHVDYMAFSDQDTFLS-VSNYAF 658
Query: 233 IPF-FHIYGITGICCATLRNKGKVVMMNRFEL--RAFLDALITHEVTFAPIVPPIILSLV 289
             F F  Y       A++ N  ++++ +   L     L  LI  E          + +L+
Sbjct: 659 DAFTFDFY-------ASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLL 711
Query: 290 KDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGD 349
            D   D        LR ++               +     ++   YG TE +     +  
Sbjct: 712 TDAGEDWMK----GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVV 767
Query: 350 PANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA 409
              P + S    +G  + N  V  +N E  +  P    GELC+    V +GY N  + T 
Sbjct: 768 HDLPDSISSL-PIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTK 825
Query: 410 RTIDKNGW------LHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPS 463
               +N +        T                   + +K +G ++   E+E  L  +P 
Sbjct: 826 EKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPG 885
Query: 464 VEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPK 523
           V+DA VV+    E+G+      ++N   + S +D+   +   +  Y   +   F+D +P 
Sbjct: 886 VKDAVVVA-DRHESGDASINAYLVN-RTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPL 943
Query: 524 SHSGKIMRRIL 534
           + +GK+ +R+L
Sbjct: 944 TTNGKVNKRLL 954

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 115/537 (21%), Positives = 196/537 (36%), Gaps = 41/537 (7%)
Query: 16  AHDEEHI--FRSRHPAVP-VPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARD 72
           AH E H    R   PAV   P    + +     A    D VA +        TY  +   
Sbjct: 52  AHIEHHWTDLRPTGPAVERAPAGACVHELFEAQAARAPDAVALLH--EADELTYGALNER 109
Query: 73  TRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVD 132
               A  L  LG+  G +V V L    +  +  L ++ AGG ++  +P      L   ++
Sbjct: 110 ANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLE 169
Query: 133 AADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQ 192
              A L+V+  P+  ++ G     +         A N +  +   D A   F++    + 
Sbjct: 170 DTGAPLLVTSRPLSGRLTGTTTLYVEDEAASDAPAGNLATGVGPEDVACVMFTSGSTGR- 228
Query: 193 TDLWISKGVMLTHRNLVANLCSTLFSVV--PEMIGQVTTLGLIPF-FHIYG--ITGICCA 247
                 KGVM  HR L        ++     E+  Q + +    F   ++G  + G  C 
Sbjct: 229 -----PKGVMSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARC- 282
Query: 248 TLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAV 307
            L++      +   EL A       H VT   +   +   LV D + + F+     +R  
Sbjct: 283 VLQSGQNPDPLEIGELVA------RHGVTMLQLSASLFNFLV-DEVPEAFE----GVRYA 331
Query: 308 MTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILP 367
           +T          +   +  P +++   YG  E    T  +   A   +G+    +G  L 
Sbjct: 332 ITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTAL-PIGVPLA 390
Query: 368 NLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGW--------LH 419
                 ++ +  K   +   GEL V    +  GY +    TA     + +          
Sbjct: 391 GKRAYVLDDDL-KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYR 449
Query: 420 TXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAG- 478
           T                   + +K +GF+V P E+EA L+ HP+V  AAV++  D   G 
Sbjct: 450 TGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQ-DSRLGD 508
Query: 479 -EIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
            ++ A  V    +A     ++   VA  +  Y        VD +P++ +GK+ RR L
Sbjct: 509 KQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRAL 565

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 11/224 (4%)
Query: 324 KKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLP 383
           ++FP  ++   YG TE +    +     +  + S+   VGF  P++ + FI  E G+ LP
Sbjct: 282 ERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNI-FIMDEEGQPLP 340
Query: 384 SNTPGELCVRSQCVMQGYYNNEEETARTI--DKNGWLHTXXXXXXXXXXXXXXXXXXKEL 441
               GE+ +    V +GY    E T +     +  W +                      
Sbjct: 341 EGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQ 400
Query: 442 IKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDD---- 497
           IK  G+++   E+E  +     V  A V+  P +  G +      + P   E E +    
Sbjct: 401 IKLHGYRMELEEIEFHVRQSQYVRSAVVI--PYQPNGTVEYLIAAIVPEEHEFEKEFQLT 458
Query: 498 --IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML 539
             I   +A+++  Y   R   + D I  + +GKI R+ + +++L
Sbjct: 459 SAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVL 502

>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 154/422 (36%), Gaps = 65/422 (15%)
Query: 39  PDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNV 98
           P F   D E   D VA          T++Q+ R T   A+ L   G   G  V++  P  
Sbjct: 41  PAFTFMDYEQDWDGVAIT-------LTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQG 92
Query: 99  AEYGIVALGIMAAGGVFSGAN-PTAHASELKKQV---DAADAKLIVSYAPIYEKVKGLGL 154
            EY +  LG + AG +    + P    ++ +      D++   ++ + + + + V+ +  
Sbjct: 93  LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVAR 152
Query: 155 PIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKG-------VMLTHRN 207
                GE     +I   +L++     G  F  D+      L  + G       V+++H+N
Sbjct: 153 ---RPGES--PPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQN 207
Query: 208 LVANLCSTLFSVVPEMIG----QVTTLGLIPFFHIYG-ITGICCATLRN-----KGKVVM 257
           +  N    +     +  G        +  +PF+H  G + GIC   L          V  
Sbjct: 208 VRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSF 267
Query: 258 MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXX 317
           + R      L A   H  + AP        L      D+ D++   L  ++T        
Sbjct: 268 LQRPARWMHLMASDFHAFSAAPN---FAFELAARRTTDD-DMAGRDLGNILTILSGSERV 323
Query: 318 XXSS---FEKKFPGVQVQE-----AYGLTEHSCITLTY--GDP---------------AN 352
             ++   F  +F    +QE     +Y L E +    T   G P               A 
Sbjct: 324 QAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAK 383
Query: 353 PSAGSKKNS-VGFILPNLE-VKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETAR 410
           P AG    S + ++LP    V+ ++ +T    P  T GE+ V    V  GY+   +E+ R
Sbjct: 384 PCAGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESER 443
Query: 411 TI 412
           T 
Sbjct: 444 TF 445

>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp Ligase Faal28 From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/422 (22%), Positives = 155/422 (36%), Gaps = 65/422 (15%)
Query: 39  PDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNV 98
           P F   D E   D VA          T++Q+ R T   A+ L   G   G  V++  P  
Sbjct: 41  PAFTFXDYEQDWDGVAIT-------LTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQG 92
Query: 99  AEYGIVALGIMAAGGVFSGAN-PTAHASELKKQV---DAADAKLIVSYAPIYEKVKGLGL 154
            EY +  LG + AG +    + P    ++ +      D++   ++ + + + + V+ +  
Sbjct: 93  LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVAR 152
Query: 155 PIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKG-------VMLTHRN 207
                GE     +I   +L++     G  F  D+      L  + G       V+ +H+N
Sbjct: 153 ---RPGES--PPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVXSHQN 207
Query: 208 LVAN---LCSTLFSVVPEMIGQVTTL-GLIPFFHIYG-ITGICCATLRN-----KGKVVM 257
           +  N   L S  F+    +    + L   +PF+H  G + GIC   L          V  
Sbjct: 208 VRVNFEQLXSGYFADTDGIPPPNSALVSWLPFYHDXGLVIGICAPILGGYPAVLTSPVSF 267
Query: 258 MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXX 317
           + R      L A   H  + AP        L      D+ D +   L  ++T        
Sbjct: 268 LQRPARWXHLXASDFHAFSAAPN---FAFELAARRTTDD-DXAGRDLGNILTILSGSERV 323
Query: 318 XXSS---FEKKFPGVQVQE-----AYGLTEHSCITLTY--GDP---------------AN 352
             ++   F  +F    +QE     +YGL E +    T   G P               A 
Sbjct: 324 QAATIKRFADRFARFNLQERVIRPSYGLAEATVYVATSKPGQPPETVDFDTESLSAGHAK 383
Query: 353 PSAGSKKNS-VGFILPNLE-VKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETAR 410
           P AG    S + + LP    V+ ++ +T    P  T GE+ V    V  GY+   +E+ R
Sbjct: 384 PCAGGGATSLISYXLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESER 443
Query: 411 TI 412
           T 
Sbjct: 444 TF 445

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 110/493 (22%), Positives = 185/493 (37%), Gaps = 42/493 (8%)
Query: 61  GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANP 120
           G+  TY Q+ RD+   A  + SL L     V+V      +     + +  +G  +   + 
Sbjct: 27  GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDV 86
Query: 121 TAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKA 180
            +    +   ++ A   LI++       ++G+ L  + L E  IESA    +L E   + 
Sbjct: 87  HSAPERILAIIEIAKPSLIIAIEEFPLTIEGISL--VSLSE--IESA----KLAEMPYER 138
Query: 181 GNNFSNDDD----VKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFF 236
            ++   DD+             KGV ++H NL++     +     ++  Q   L   P+ 
Sbjct: 139 THSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYS 198
Query: 237 HIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSL--VKDPIV 294
               +      TL   G +  + + EL A    L T   T A +   I  S     D  +
Sbjct: 199 FDLSVM-YWAPTLALGGTLFALPK-ELVADFKQLFT---TIAQLPVGIWTSTPSFADMAM 253
Query: 295 DEFDLSKLQLRAVMTXXXXXXXXXXSSFEK---KFPGVQVQEAYGLTEH----SCITLTY 347
              D  + ++ A+            S+  K   +FP  ++  AYG TE     S I +T 
Sbjct: 254 LSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITR 313
Query: 348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEE 407
               N +    +  +G+  P+     I+ E GK L S   GE+ V    V +GY NN E+
Sbjct: 314 EMVDNYT----RLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEK 368
Query: 408 TAR---TIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSV 464
           TA    T       HT                     IKY G+++   ++   L   P V
Sbjct: 369 TAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMV 428
Query: 465 EDA-AVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDF-------VASNVATYKKVRVLH 516
             A AV     E   +   A +V+    KE  D  ++        V  ++ +Y       
Sbjct: 429 ASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFL 488
Query: 517 FVDGIPKSHSGKI 529
           + D +P + +GKI
Sbjct: 489 YRDSLPLTPNGKI 501

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 95/543 (17%), Positives = 201/543 (37%), Gaps = 59/543 (10%)
Query: 15  AAHDEE-HIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDT 73
             H+EE ++F   +     P + T+     +      + VA V     +  TY ++    
Sbjct: 17  GTHEEEQYLFAVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIV--CENEQLTYHELNVKA 74
Query: 74  RGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDA 133
              A+     G+ K  +V +++    +  I  L ++ AGG +   +       ++  +D 
Sbjct: 75  NQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDD 134
Query: 134 ADAKLIVSYAPIYEKVKGLGL--PIIVLGEERIE-----------SAINWSELIEAADKA 180
           + A+++++   +   +  +     + +  E+ I+            + + + +I  +   
Sbjct: 135 SQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTT 194
Query: 181 GNNFSNDDDVKQTDLWISKGVMLTHR---NLVANLCSTLFSVVPEMIGQVTTLGLIPFFH 237
           GN                KG ML H+   NL     ++L     + IGQ  ++       
Sbjct: 195 GN---------------PKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW 239
Query: 238 IYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEF 297
              +  +  A+L    K  + +  +   +++     E+T   + P  ++ L  + I    
Sbjct: 240 EMFMALLTGASLYIILKDTINDFVKFEQYINQ---KEITVITLPPTYVVHLDPERI---- 292
Query: 298 DLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGS 357
               L ++ ++T          + +++K   +    AYG TE +    T+   A      
Sbjct: 293 ----LSIQTLITAGSATSPSLVNKWKEKVTYIN---AYGPTETTICATTW--VATKETIG 343
Query: 358 KKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGW 417
               +G  + N ++ +I  E  +       GELC+  + + +GY+   E T++    N +
Sbjct: 344 HSVPIGAPIQNTQI-YIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPF 402
Query: 418 L------HTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS 471
           +       T                     +K +G +V   E+E+ILL H  + + AV  
Sbjct: 403 VPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSV 462
Query: 472 LPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMR 531
             D +  E P  C           + +  F +  + TY        +D +P + +GKI R
Sbjct: 463 HKDHQ--EQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDR 520
Query: 532 RIL 534
           + L
Sbjct: 521 KQL 523

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/374 (20%), Positives = 139/374 (37%), Gaps = 52/374 (13%)
Query: 199 KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV--V 256
           +GV++THR + ANL +     +    G    +  +PF+H  G+ G     +  +  V  +
Sbjct: 191 RGVIITHREVXANLRAISHDGIKLRPGD-RCVSWLPFYHDXGLVGFLLTPVATQLSVDYL 249
Query: 257 MMNRFELRAF-LDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQL---RAVMTXXX 312
               F  R      LI+       + PP    L +   V+E DL++L L   R       
Sbjct: 250 RTQDFAXRPLQWLKLISKNRGTVSVAPPFGYELCQRR-VNEKDLAELDLSCWRVAGIGAE 308
Query: 313 XXXXXXXSSFEKKFPGVQVQE-----AYGLTEHSCITLTYGDPAN--------------- 352
                    F + F  V          YGL E++ + +++ D A+               
Sbjct: 309 PISAEQLHQFAECFRQVNFDNKTFXPCYGLAENA-LAVSFSDEASGVVVNEVDRDILEYQ 367
Query: 353 -----PSAGSKKNSV----GFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYN 403
                P A ++  S     G  LP   ++  N E G  +     G +C+    +  GY+ 
Sbjct: 368 GKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGXPVAERVVGHICISGPSLXSGYFG 426
Query: 404 NEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPS 463
           + + +   I   GWL T                  K+LI  +G  + P ++E I    P 
Sbjct: 427 D-QVSQDEIAATGWLDT-GDLGYLLDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPE 484
Query: 464 VEDA-AVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVD--- 519
           +    A+  +  +E   +   C + +   +E    ++  +A+ + +  +  V   +D   
Sbjct: 485 IHSGDAIAFVTAQEKIILQIQCRISD---EERRGQLIHALAARIQS--EFGVTAAIDLLP 539
Query: 520 --GIPKSHSGKIMR 531
              IP++ SGK  R
Sbjct: 540 PHSIPRTSSGKPAR 553

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	544
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	0.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	0.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	0.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	0.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	0.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-146
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	1e-133
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-132
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	1e-131
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	1e-129
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	1e-128
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-126
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-126
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-126
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-119
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	3e-86
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	7e-85
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-83
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-65
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	6e-62
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	3e-51
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	5e-24
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	9e-24
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-23
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	1e-22
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	2e-05
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	9e-22
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	9e-21
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	9e-04
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	3e-19
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	5e-19
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	6e-19
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	3e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	6e-08
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	8e-08
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	2e-07

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  695 bits (1795), Expect = 0.0
 Identities = 197/553 (35%), Positives = 316/553 (57%), Gaps = 23/553 (4%)

Query: 12  PLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVAR 71
             +  ++ + IFRS+ P + +P +++L D++ Q+   +A K   +   +G  YTY+ V  
Sbjct: 37  KQSNNNNSDVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHV 96

Query: 72  DTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQV 131
            +R  A     LG+ +  VV+++LPN  E+ +  L     G   + ANP    +E+ KQ 
Sbjct: 97  ISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQA 156

Query: 132 DAADAKLIVSYAPIYEKVKGL----GLPIIVLGEER----IESAINWSELIEAADKAGNN 183
            A++ KLI++ A   +K+K L    G+ I+ + +       E  + ++EL ++     + 
Sbjct: 157 KASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQS-TTEASE 215

Query: 184 FSNDDDVKQTDLW----------ISKGVMLTHRNLVANLCSTLFSVVPEMI--GQVTTLG 231
             +  ++   D+           + KGVMLTH+ LV ++   +    P +        L 
Sbjct: 216 VIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILC 275

Query: 232 LIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKD 291
           ++P FHIY +  I    LR    +++M +FE+   L+ +   +VT AP+VPPI+L++ K 
Sbjct: 276 VLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS 335

Query: 292 PIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPA 351
              +++DLS +  R V + AAPL  +L  +   KFP  ++ + YG+TE   +       A
Sbjct: 336 SETEKYDLSSI--RVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFA 393

Query: 352 NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETART 411
                 K  + G ++ N E+K ++P+TG SL  N PGE+C+R   +M+GY NN   TA T
Sbjct: 394 KEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAET 453

Query: 412 IDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS 471
           IDK+GWLHTGDIG IDDD ++FIVDR+KELIKYKGFQVAPAELEA+L+ HP + D AVV+
Sbjct: 454 IDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVA 513

Query: 472 LPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMR 531
           + +E AGE+P A VV + +++ SEDD+  FV+  V  YK++  + F + IPK+ SGKI+R
Sbjct: 514 MKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILR 573

Query: 532 RILKDKMLEKMRK 544
           + L+ K+   +  
Sbjct: 574 KDLRAKLANGLGS 586

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  676 bits (1746), Expect = 0.0
 Identities = 203/536 (37%), Positives = 320/536 (59%), Gaps = 23/536 (4%)

Query: 18  DEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFA 77
            EE IFRS+ P + +P+N+ L  +VL++   ++ K   +   +G  YTYA V    R  A
Sbjct: 4   QEEFIFRSKLPDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVA 63

Query: 78  KALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAK 137
             L  +G+++G V+++ LP+  E+ +  LG    G + + ANP +  +EL K   A+ AK
Sbjct: 64  SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123

Query: 138 LIVSYAPIYEKV----KGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQT 193
           L+++ A  YEKV    +   + ++ +     +  +++SEL +A +          D+   
Sbjct: 124 LLITQACYYEKVKDFARESDVKVMCVDSAP-DGCLHFSELTQADENEAPQV----DISPD 178

Query: 194 DLWI----------SKGVMLTHRNLVANLCSTLFSVVPEMI--GQVTTLGLIPFFHIYGI 241
           D+             KGVMLTH+ L+ ++   +    P +    +   L ++P FHIY +
Sbjct: 179 DVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYAL 238

Query: 242 TGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSK 301
             I    LR    +++M +FE+ + L  +  ++V+ AP+VPP+++S+ K P +D+ DLS 
Sbjct: 239 NSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSS 298

Query: 302 LQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNS 361
           L  R + +  APL  +L  +   KFP  ++ + YG+TE   +       A      K  +
Sbjct: 299 L--RMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGA 356

Query: 362 VGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTG 421
            G ++ N E+K ++PETG SLP N PGE+C+R   +M+GY N+ E T+RTIDK GWLHTG
Sbjct: 357 CGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTG 416

Query: 422 DIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIP 481
           DIGYIDDD ++FIVDR+KELIKYKGFQVAPAELEA+L+ HP + DAAVV L DE+AGE+P
Sbjct: 417 DIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVP 476

Query: 482 AACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
            A VV +  ++ +ED+I  +++  V  YK+++ + F++ IPK+ SGKI+R+ LK+K
Sbjct: 477 VAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEK 532

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  652 bits (1684), Expect = 0.0
 Identities = 171/553 (30%), Positives = 278/553 (50%), Gaps = 34/553 (6%)

Query: 17  HDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYA---DKVAFVEAVSGKAYTYAQVARDT 73
            D ++I +   P  P+  + T  + + +  + YA     +AF +A      TYA+    +
Sbjct: 2   EDAKNIKKGPAPFYPLE-DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMS 60

Query: 74  RGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDA 133
              A+A++  GL     ++V   N  ++ +  LG +  G   + AN   +  EL   ++ 
Sbjct: 61  VRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNI 120

Query: 134 ADAKLIVSYAPIYEKV----KGLGLP---IIVLGEERIESAINWSELIEAADKAGNNFSN 186
           +   ++       +K+    K L +    II+  +   +   +    + +    G N  +
Sbjct: 121 SQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYD 180

Query: 187 DDDVK---QTDLWI----------SKGVMLTHRNLVANLCSTLFSVVP-EMIGQVTTLGL 232
                      + +           KGV L HR            +   ++I     L +
Sbjct: 181 FVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSV 240

Query: 233 IPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDP 292
           +PF H +G+       L    +VV+M RFE   FL +L  +++  A +VP +     K  
Sbjct: 241 VPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST 299

Query: 293 IVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPAN 352
           ++D++DLS L    + +  APL+ ++  +  K+F    +++ YGLTE +   L       
Sbjct: 300 LIDKYDLSNL--HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL-----IT 352

Query: 353 PSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI 412
           P    K  +VG ++P  E K ++ +TGK+L  N  GELCVR   +M GY NN E T   I
Sbjct: 353 PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALI 412

Query: 413 DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSL 472
           DK+GWLH+GDI Y D+D   FIVDR+K LIKYKG+QVAPAELE+ILL HP++ DA V  L
Sbjct: 413 DKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGL 472

Query: 473 PDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRV-LHFVDGIPKSHSGKIMR 531
           PD++AGE+PAA VV+      +E +I+D+VAS V T KK+R  + FVD +PK  +GK+  
Sbjct: 473 PDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDA 532

Query: 532 RILKDKMLEKMRK 544
           R +++ +++  + 
Sbjct: 533 RKIREILIKAKKG 545

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  649 bits (1677), Expect = 0.0
 Identities = 166/551 (30%), Positives = 271/551 (49%), Gaps = 33/551 (5%)

Query: 18  DEEHIFRSRHPAVPVPENVTLPDFVLQDAELYAD--KVAFVEAVSGKAYTYAQVARDTRG 75
           ++E+I     P  P+    +    + +  E YA    +AF  AV+G  Y+YA+    +  
Sbjct: 6   NDENIVVGPKPFYPIE-EGSAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCC 64

Query: 76  FAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAAD 135
             KAL++ GL     + +   N  E+ I  +  +  G   +  N      EL   +  + 
Sbjct: 65  LGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISK 124

Query: 136 AKLIVSYAPIYEKV----KGLGLP---IIVLGEERIESAINWSELIEAADKAGNNFSNDD 188
             ++ S     +KV    K +      +I+  +            I+     G   S+  
Sbjct: 125 PTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFK 184

Query: 189 DVK---QTDLWI----------SKGVMLTHRNLVANLCSTLFSVVP-EMIGQVTTLGLIP 234
            V+   +  + +           KGV LTH N+V         +   ++      L ++P
Sbjct: 185 TVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVP 244

Query: 235 FFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIV 294
           F H +G+       L    +VVM+ +F+   FL  L  ++ T   +VP +   L K  ++
Sbjct: 245 FHHGFGMF-TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELL 303

Query: 295 DEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPS 354
           +++DLS L    + +  APL+ ++  +  ++F    V++ YGLTE +   +       P 
Sbjct: 304 NKYDLSNL--VEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII-----ITPE 356

Query: 355 AGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDK 414
              K  + G ++P  + K I+ +T KSL  N  GE+CV+   +M+GY NN E T   ID+
Sbjct: 357 GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDE 416

Query: 415 NGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPD 474
            GWLHTGDIGY D++   FIVDR+K LIKYKG+QV PAELE++LL HPS+ DA V  +PD
Sbjct: 417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPD 476

Query: 475 EEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRV-LHFVDGIPKSHSGKIMRRI 533
             AGE+P A VV+      +E ++MD+VAS V+  K++R  + FVD +PK  +GKI  R 
Sbjct: 477 PVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRA 536

Query: 534 LKDKMLEKMRK 544
           +++ + + + K
Sbjct: 537 IREILKKPVAK 547

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  588 bits (1519), Expect = 0.0
 Identities = 155/559 (27%), Positives = 273/559 (48%), Gaps = 52/559 (9%)

Query: 18  DEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVS------GKAYTYAQVAR 71
             E  ++   P++  P  ++L D +   AE + +K A + A         ++  + ++  
Sbjct: 2   SLELKYKIGFPSLYYP-KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICE 60

Query: 72  DTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQV 131
            T+  A  +   G+RKG+ V V +PN  +Y +    +          NP   + EL+  +
Sbjct: 61  VTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHIL 120

Query: 132 DAADAKLIVSYAPIYEKVK----GLGLPIIVLGEERIESAINWSELIEAADKAGNNFSND 187
           + ++A  +V ++ +YE  K      G+  + +    + S    SE++++  +    F N 
Sbjct: 121 NDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNS---LSEVMDSGSED---FENV 174

Query: 188 DDVKQTDL----------WISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFH 237
               + D+           + KGVMLTH NL AN      +V   +    T +G +P FH
Sbjct: 175 KVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQ--LAVATGLSHMDTIVGCMPMFH 232

Query: 238 IYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVK--DPIVD 295
                 +    +    + V+M  F      + +  ++ TF+  VPP +  LV   +    
Sbjct: 233 SAEFG-LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK 291

Query: 296 EFDLSKLQLRAVMTAAAPLAPDLLSSFEKKF------PGVQVQEAYGLTEHSCITLTYGD 349
            +D S L  +   T A P+AP L+    K        P ++  + +G+TE   +  T   
Sbjct: 292 TYDWSYL--KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTT--- 346

Query: 350 PANPSAGSKKN-SVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEET 408
             NP     K+ + G  + ++E+K I+ E G+ L     GE+ +R   + +GY+  E+E 
Sbjct: 347 --NPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKEN 404

Query: 409 ARTI----DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSV 464
                       +  TGD+G+ID++G +   DR+KE+IKYKG+ +AP ELEA+L+ H +V
Sbjct: 405 QECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAV 464

Query: 465 EDAAVVSLPDEEAGEIPAACVVMNPN--AKESEDDIMDFVASNVATYKKVRVLHFVDGIP 522
            D AV+  PDEEAGE+P A +V+ P    K  E+DI+++V   ++ YK+VR + FV+ +P
Sbjct: 465 MDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELP 524

Query: 523 KSHSGKIMRRILKDKMLEK 541
           ++ SGK++RR+L++K  E 
Sbjct: 525 RTASGKLLRRLLREKEAEG 543

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  428 bits (1102), Expect = e-146
 Identities = 131/509 (25%), Positives = 222/509 (43%), Gaps = 34/509 (6%)

Query: 43  LQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYG 102
           L D      K+A +E  +G   +YA++       A  L + GL+ G  V        E  
Sbjct: 9   LFDKLDDPHKLA-IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEAL 67

Query: 103 IVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----GLPIIV 158
           ++ L  + AGGV+   N      EL   +  A+ K++V      + +  +    G  +  
Sbjct: 68  VLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVET 127

Query: 159 LGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWI----------SKGVMLTHRNL 208
           LG +          L +AA  A   F+   D    DL            SKG ML+H NL
Sbjct: 128 LGPDG------RGSLTDAAAGASEAFA-TIDRGADDLAAILYTSGTTGRSKGAMLSHDNL 180

Query: 209 VANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLD 268
            +N  + +             +  +P +H +G+      TL  +G ++ + +F+    LD
Sbjct: 181 ASNSLTLVDYW--RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILD 238

Query: 269 ALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPG 328
            +     T    VP     L++ P + +     +  R  ++ +APL  D    +  K  G
Sbjct: 239 LM--ARATVLMGVPTFYTRLLQSPRLTKETTGHM--RLFISGSAPLLADTHREWSAKT-G 293

Query: 329 VQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPG 388
             V E YG+TE +  T                +VG  LP +  +  +PETGK LP    G
Sbjct: 294 HAVLERYGMTETNMNTSN-----PYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIG 348

Query: 389 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQ 448
            + V+   V +GY+   E+T      +G+  TGD+G ID+ G + I+ R K+L+   GF 
Sbjct: 349 MIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFN 408

Query: 449 VAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVAT 508
           V P E+E+ +   P V ++AV+ +P  + GE   A VV +  A   E  ++  +   +A 
Sbjct: 409 VYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAK 468

Query: 509 YKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
           +K  + + FVD +P++  GK+ + +L++ 
Sbjct: 469 FKMPKKVIFVDDLPRNTMGKVQKNVLRET 497

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  396 bits (1019), Expect = e-133
 Identities = 130/511 (25%), Positives = 229/511 (44%), Gaps = 27/511 (5%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
            +   + Q A +     A+VE  +    TYAQ+       A  L +LG+ KG  V +++P
Sbjct: 17  NIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMP 76

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPI 156
           N  E+  +  G    G V    N    A E+   +  + +K+++  AP    +  +    
Sbjct: 77  NSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA 136

Query: 157 IVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWI----------SKGVMLTHR 206
                  +   I    L E    A  +     +    D              KGV+ TH 
Sbjct: 137 DPP--GTVTDWIGADSLAERLRSAAADEP-AVECGGDDNLFIMYTSGTTGHPKGVVHTHE 193

Query: 207 NLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAF 266
           ++ +   S   ++  ++  +   L  +P FH+  +T +  + +R    ++ M +F+    
Sbjct: 194 SVHSAASSWASTI--DVRYRDRLLLPLPMFHVAALTTVIFSAMRG-VTLISMPQFDATKV 250

Query: 267 LDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKF 326
              ++   V     VP I+  + + P   E D      R  +T  AP+   L+  +    
Sbjct: 251 WSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDF--RYFITGGAPMPEALIKIYA--A 306

Query: 327 PGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNT 386
             ++V + Y LTE      T     +  A  K  S G      +V     + G       
Sbjct: 307 KNIEVVQGYALTESCGGG-TLLLSED--ALRKAGSAGRATMFTDVAVRGDD-GVIREHG- 361

Query: 387 PGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKG 446
            GE+ ++S  +++ Y+N  E T    D NGW  TGDIG IDD+G ++I DR+K++I   G
Sbjct: 362 EGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGG 420

Query: 447 FQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNV 506
             V PAE+E++++  P V + AV+ LPDE+ GEI AA VV +   + SE  I+++  + +
Sbjct: 421 ENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQ-NEVSEQQIVEYCGTRL 479

Query: 507 ATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
           A YK  + + F + IP++ +GKI++ +L+++
Sbjct: 480 ARYKLPKKVIFAEAIPRNPTGKILKTVLREQ 510

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  393 bits (1011), Expect = e-132
 Identities = 125/520 (24%), Positives = 212/520 (40%), Gaps = 43/520 (8%)

Query: 35  NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVV 94
           + TL D   ++A L+ D+ AF+    G   T+          A  L   G+  G  V ++
Sbjct: 5   DFTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLRDGVHTGDRVAIL 62

Query: 95  LPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-- 152
             N +E   +   +   G +    N   +A E+   +      ++V+     + V G+  
Sbjct: 63  SQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP 122

Query: 153 ---GLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWI----------SK 199
              G+       +       + +L      +        +    D ++           +
Sbjct: 123 SLGGVKKAYAIGDGSGPFAPFKDLASDTPFS------APEFGAADGFVIIHTAAVGGRPR 176

Query: 200 GVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN 259
           G +++  NL+    S + +    +      LG++P FH+ G+  +     +  G  V+  
Sbjct: 177 GALISQGNLLIAQSSLVDAW--RLTEADVNLGMLPLFHVTGLG-LMLTLQQAGGASVIAA 233

Query: 260 RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLL 319
           +F+       +  H+VT      P++ +++         L+ L  RAV     P   +  
Sbjct: 234 KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASL--RAVTGLDTPETIERF 289

Query: 320 SSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG 379
              E   P       +G +E S ++ T+          +  S G  L    V  ++ E  
Sbjct: 290 ---EATCPNATFWATFGQSETSGLS-TFAPYR-----DRPKSAGRPLFWRTVAVVDAE-D 339

Query: 380 KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRI- 438
           + LP    GE+ +R   V +GY+NN   T     +NGW HTGD+G  D DG +F   R  
Sbjct: 340 RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAP 398

Query: 439 -KELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDD 497
            KELIK  G  V PAE+E  L  HP++ DA V+ +PD +  E   A  V  P    + D 
Sbjct: 399 EKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADA 458

Query: 498 IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
           + +FVAS +A YKK + + FV+ +PK   G I R  +K  
Sbjct: 459 LAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTA 498

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  390 bits (1005), Expect = e-131
 Identities = 114/529 (21%), Positives = 210/529 (39%), Gaps = 33/529 (6%)

Query: 28  PAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRK 87
                P       ++ +  E  A K A+++     + TY ++    R FA ALR+LG+  
Sbjct: 15  TVEAPPALFNFAAYLFRLNETRAGKTAYIDD--TGSTTYGELEERARRFASALRTLGVHP 72

Query: 88  GQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYE 147
            + +++V+ +     +  LG + AG V   AN     ++    +  + A+ +++   + +
Sbjct: 73  EERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQ 132

Query: 148 KVKGL-----GLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTD--LWI--- 197
            V             ++  +  ES    + L E    A    +        D   W+   
Sbjct: 133 NVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSS 192

Query: 198 -----SKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNK 252
                 KG + TH NL           +  +            F  YG+       L   
Sbjct: 193 GSTGKPKGTVHTHANLYWT-AELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251

Query: 253 GKVVMM-NRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAA 311
              ++M  R    A    L+ H  T    VP +  +++  P +       +  R   +A 
Sbjct: 252 ATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAI--RICTSAG 309

Query: 312 APLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEV 371
             L  ++   F   F G ++ +  G TE   I L+     N +   +  + G  +P  E+
Sbjct: 310 EALPREIGERFTAHF-GCEILDGIGSTEMLHIFLS-----NRAGAVEYGTTGRPVPGYEI 363

Query: 372 KFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGD 431
           +  + E G ++P    G+L ++       Y+NN E++  T     W+ +GD      +G 
Sbjct: 364 ELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGC 421

Query: 432 IFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA 491
                R  +++K  G  V+P E+E +L+ H +V +AAVV +          A VV+    
Sbjct: 422 YVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG-LVKTRAFVVLKREF 480

Query: 492 KESE---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
             SE   +++  FV   +A +K  R + FVD +PK+ +GKI R  L+++
Sbjct: 481 APSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  386 bits (993), Expect = e-129
 Identities = 113/517 (21%), Positives = 190/517 (36%), Gaps = 32/517 (6%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           T+ + + + A    D  A      G   T+A++       A  L + GLR  Q V VV P
Sbjct: 3   TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPI 156
           N A+  I  L +   G V +  NP   ++EL + +   +    V  A   +    +    
Sbjct: 63  NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAV-IAVGRQVADAIFQSG 121

Query: 157 IVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWI---------SKGVMLTHRN 207
                  +   +   E         +             +I          K  ++  R 
Sbjct: 122 SGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQP----AFIFYTSGTTGLPKAAIIPQRA 177

Query: 208 LVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFL 267
             + +      V          LGL+P +H+ G   +  A L   G  V++  F     L
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL 237

Query: 268 DALITHEVTFAPIVPPIILSLVKDP--IVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKK 325
             +   +VT     P  + +L            L  L  R V  A A +   +L +  + 
Sbjct: 238 QLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL--RHVTFAGATMPDAVLETVHQH 295

Query: 326 FPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKS--LP 383
               +    YG TE          P       K  +        EV+ +    G    + 
Sbjct: 296 L-PGEKVNIYGTTEAMNSL-YMRQP-------KTGTEMAPGFFSEVRIVRIGGGVDEIVA 346

Query: 384 SNTPGELCVR-SQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELI 442
           +   GEL V  S     GY N  + TA  +  +GW  T D+     +G + I+ R+ ++I
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMI 405

Query: 443 KYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV 502
              G  + P+E+E +L T P V +  V+ L D+  G+   ACVV       S D +  F 
Sbjct: 406 ISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFC 465

Query: 503 -ASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
            +S +A +K+ +    +D +PK+   K++RR L  ++
Sbjct: 466 RSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  382 bits (984), Expect = e-128
 Identities = 102/525 (19%), Positives = 207/525 (39%), Gaps = 48/525 (9%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           +L  ++ + A+     +A  +    ++YTY  +  +    AK L      +   V + + 
Sbjct: 2   SLDFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRL---KAYQQSRVGLYID 56

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG--- 153
           N  +  I+      A    +  N     +E+  Q+ + D +LI    P+  +   +    
Sbjct: 57  NSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLD 116

Query: 154 -------LPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWI--------- 197
                          +        +       K   +   +      D+           
Sbjct: 117 DIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTG 176

Query: 198 -SKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVV 256
             K V  T RN  A+      S+          L ++P +HI G++ +    +     V 
Sbjct: 177 PQKAVPQTFRNHYASAIGCKESL--GFDRDTNWLSVLPIYHISGLS-VLLRAVIEGFTVR 233

Query: 257 MMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAP 316
           ++++F     L  +    +T   +VP  +  L++  + + ++L     + ++   A L+ 
Sbjct: 234 IVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNL-----QKILLGGAKLSA 288

Query: 317 DLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINP 376
            ++ +  +    + +  ++G+TE +C       P      ++ ++VG    N++VK  NP
Sbjct: 289 TMIETALQY--NLPIYNSFGMTE-TCSQFLTATPEM--LHARPDTVGMPSANVDVKIKNP 343

Query: 377 ETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVD 436
                      GEL ++   VM GY    +    T  +NG+ +TGDI  ID +G + I D
Sbjct: 344 NKE------GHGELMIKGANVMNGYLYPTD-LTGTF-ENGYFNTGDIAEIDHEGYVMIYD 395

Query: 437 RIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED 496
           R K+LI   G  + P ++E +    P + DA  V  PD+  G++P    V   +   S+ 
Sbjct: 396 RRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI--SKA 453

Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541
            ++ +++ ++A YK  +    VD +P + +GK+ R  L  +    
Sbjct: 454 QLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  380 bits (979), Expect = e-126
 Identities = 104/532 (19%), Positives = 204/532 (38%), Gaps = 40/532 (7%)

Query: 34  ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIV 93
            +  L   +    + +   +A +     +  +Y ++ R +   A  L   GL KG   +V
Sbjct: 28  IDQPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAEKGLGKGDTALV 85

Query: 94  VLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV--------SYAPI 145
            LPNVAE+ IV   ++ AG V   A  +    EL   +     KL++        S    
Sbjct: 86  QLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQF 145

Query: 146 YEKVKGLGLP----IIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQ-------TD 194
            + +          I++L  +  +  +       A      + +  D+V         T 
Sbjct: 146 IDSLHD-VNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTG 204

Query: 195 LWISKGVMLTHRNLVAN--LCSTLFSVVPEMIGQVTTLGLIPFFHIYGIT-GICCATLRN 251
               K +  TH +   +    + +  +          L  +P  H + ++       L  
Sbjct: 205 T--PKLIPRTHNDYDYSVRASAEICGLNSN----TRLLCALPAPHNFMLSSPGALGVLHA 258

Query: 252 KGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAA 311
            G VVM    E       +  H+V  A +VP  ++  ++     +  +  L  + +    
Sbjct: 259 GGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSL--KLLQVGG 316

Query: 312 APLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGF-ILPNLE 370
           A     L     +     ++Q+ +G+ E         D           + G  I  + E
Sbjct: 317 ASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDDSDE----QIFTTQGRPISSDDE 371

Query: 371 VKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDG 430
           +K ++    + +P    G L  R      GYY + E  ++  D++ + ++GD+     DG
Sbjct: 372 IKIVDE-QYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDG 430

Query: 431 DIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN 490
           ++ +V RIK+ I   G ++A  E+E ++L HP V  AA+V++ DE+ GE   A +V    
Sbjct: 431 NLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNP 490

Query: 491 AKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 542
             ++       +   +A YK    +  ++ +P +  GK+ ++ L+  +    
Sbjct: 491 ELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTST 542

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  379 bits (975), Expect = e-126
 Identities = 128/533 (24%), Positives = 219/533 (41%), Gaps = 44/533 (8%)

Query: 34  ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIV 93
              T  D +   A  Y D++A         ++Y ++       A   + LG+++   V+V
Sbjct: 23  AGETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVV 80

Query: 94  VLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV--------SYAPI 145
            LPN+ E+  V   +   G +   A P+  +SE+    + A+A   +         Y  +
Sbjct: 81  QLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSL 140

Query: 146 YEKVKGLGLP----IIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQ-------TD 194
             +V+   LP    IIV GE   E  +   +L     K         DV         T 
Sbjct: 141 ARQVQS-KLPTLKNIIVAGEA--EEFLPLEDLHTEPVKLPE--VKSSDVAFLQLSGGSTG 195

Query: 195 LWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGIT--GICCATLRNK 252
           L  SK +  TH + + +L       V  +      L  +P  H Y ++  G+    L   
Sbjct: 196 L--SKLIPRTHDDYIYSL--KRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVL-GVLYAG 250

Query: 253 GKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAA 312
           G+VV+            +   +VT   +VPP+ +  +        DLS   L+ +    A
Sbjct: 251 GRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLS--SLQVLQVGGA 308

Query: 313 PLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGF-ILPNLEV 371
             + +     +  F G  +Q+ +G+ E         DP         N+ G  + P  E 
Sbjct: 309 KFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLDDPEE----IIVNTQGKPMSPYDES 363

Query: 372 KFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGD 431
           +  +    + +     G L  R    ++GYY  EE  A +  ++G+  TGDI  +  DG 
Sbjct: 364 RVWDD-HDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGY 422

Query: 432 IFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA 491
           I +  R K+ I   G +VA  E+E  LL HP+V DAA+VS+PD+  GE     ++    A
Sbjct: 423 IVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA 482

Query: 492 KESEDDIMDFVAS-NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR 543
                ++  F+    +A YK    + FV+  P++  GK+ ++ L++ + EK+ 
Sbjct: 483 -PKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLL 534

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  376 bits (969), Expect = e-126
 Identities = 123/533 (23%), Positives = 209/533 (39%), Gaps = 55/533 (10%)

Query: 24  RSRHPAVPVPE----NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKA 79
              H +  VP     +   P          AD+ A       ++ TYA++A      A  
Sbjct: 7   HHHHSSGLVPRGSHMSSLFPALSPAPTGAPADRPALRF--GERSLTYAELAAAAGATAG- 63

Query: 80  LRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLI 139
                +     V V      E G+  +  + AG      NP +   EL   +  +   L+
Sbjct: 64  ----RIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLV 119

Query: 140 VSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWI-- 197
           ++            L  + +      +        + AD        D D       +  
Sbjct: 120 LAPPDAELPPALGALERVDVDVRARGAV-----PEDGAD--------DGDP----ALVVY 162

Query: 198 -------SKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLR 250
                   KG ++  R L   L +   +   +  G+   +  +P FH++G+       LR
Sbjct: 163 TSGTTGPPKGAVIPRRALATTLDA--LADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLR 220

Query: 251 NKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEF---DLSKLQLRAV 307
             G V  + RF         +    T    VP +   + +    D      L+    R +
Sbjct: 221 RGGSVRHLGRFSTEGAARE-LNDGATMLFGVPTMYHRIAETLPADPELAKALAGA--RLL 277

Query: 308 MTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILP 367
           ++ +A L             G +V E YG+TE + +  +      P AG+    VG  LP
Sbjct: 278 VSGSAALPVHDHERIAAAT-GRRVIERYGMTE-TLMNTSVRADGEPRAGT----VGVPLP 331

Query: 368 NLEVKFINPETG--KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGY 425
            +E++ +  +     +L   + GE+ VR   +   Y N  + TA    ++G+  TGD+  
Sbjct: 332 GVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAV 391

Query: 426 IDDDGDIFIVDR-IKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAAC 484
            D DG + IV R   +LIK  G+++   E+E  LL HP V +AAV   PD + GE   A 
Sbjct: 392 RDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAW 451

Query: 485 VVM-NPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
           +V  +P A  +   + D VA+ +A +K+ RV+ ++D +P++  GKIM+R L  
Sbjct: 452 IVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  363 bits (935), Expect = e-119
 Identities = 115/534 (21%), Positives = 208/534 (38%), Gaps = 47/534 (8%)

Query: 34  ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIV 93
           +++ L D + + A   +D +A ++    +  +Y ++ +     A +LR  G++ G+  +V
Sbjct: 25  QDLPLTDILTRHAA--SDSIAVIDG--ERQLSYRELNQAADNLACSLRRQGIKPGETALV 80

Query: 94  VLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV--------SYAPI 145
            L NVAE  I    ++  G     A  +   SEL       +  L++        S    
Sbjct: 81  QLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDF 140

Query: 146 YEKVKGLGLP----IIVLGEERIESAINWSELIEAADKAGNNFSND-DDVKQ-------T 193
                         + +L +       N  + I    +      +  D+V         T
Sbjct: 141 LNTFVT-EHSSIRVVQLLNDS---GEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTT 196

Query: 194 DLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGIT-GICCATLRNK 252
                K +  TH +   ++       + +   Q   L  IP  H Y ++           
Sbjct: 197 GT--PKLIPRTHNDYYYSV--RRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAG 252

Query: 253 GKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLV--KDPIVDEFDLSKLQLRAVMTA 310
           G VV+            +  H+V    +VPP +   +           L+ L  + +   
Sbjct: 253 GTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASL--KLLQVG 310

Query: 311 AAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGF-ILPNL 369
            A L+  L +    +  G Q+Q+ +G+ E         D A        ++ G+ + P+ 
Sbjct: 311 GARLSATLAARIPAEI-GCQLQQVFGMAEGLVNYTRLDDSAE----KIIHTQGYPMCPDD 365

Query: 370 EVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDD 429
           EV   + E G  LP    G L  R     +GYY + +  A   D NG+  +GD+  ID +
Sbjct: 366 EVWVADAE-GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPE 424

Query: 430 GDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP 489
           G I +  R K+ I   G ++A  E+E +LL HP+V  AA+VS+ DE  GE   A +V+  
Sbjct: 425 GYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE 484

Query: 490 NAKESEDDIMDFVAS-NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 542
                   +  F+    +A +K    +  VD +P +  GK+ ++ L+  +  + 
Sbjct: 485 PL--RAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  276 bits (709), Expect = 3e-86
 Identities = 120/590 (20%), Positives = 231/590 (39%), Gaps = 79/590 (13%)

Query: 5   NSFSVPVPLAAAHDEEHIFRSRHPAVPVPE--NVTLPDFV-----LQDAELYADKVAFV- 56
           +  S  V L   +        +     VP   N    D +     ++ A       A   
Sbjct: 6   HHHSSGVDLGTENLYFQSMSLQWGHQEVPAKFNFAS-DVLDHWADMEKAGKRPPSPALWW 64

Query: 57  --EAVSGKAYTYAQVARDTRGFAKALR-SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG 113
                    + + +++ +++  A  L  + GL++G  V VVLP V E+ +V LG + AG 
Sbjct: 65  VNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGL 124

Query: 114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL--GLP----IIVLGEERIESA 167
           +F        ++++  ++  + AK IV+   + ++V  +    P     +++ E+  +  
Sbjct: 125 IFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGW 184

Query: 168 INWSELIEAADKAGNNFSNDDDVKQTD-LWIS---------KGVMLTHRNLVANLCSTLF 217
           +N+ +L+  A        +  +    +   I          K    ++ +L         
Sbjct: 185 LNFKKLLNEAST----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAG 240

Query: 218 SVVPEMIGQVTTLGLIP---FFH------IYGITGICCATLRNKGKVVMMN--RFELRAF 266
                        GL      +       I  I               +    +F+    
Sbjct: 241 W-----------TGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVI 289

Query: 267 LDALITHEVT--FAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEK 324
           L  L ++ +        P +   L++   +  +    L  +  +T    L P+ L ++  
Sbjct: 290 LKTLSSYPIKSMMGA--PIVYRMLLQQD-LSSYKFPHL--QNCVTVGESLLPETLENWRA 344

Query: 325 KFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPS 384
           +  G+ ++E+YG TE     +        +   K   +G      +V+ I+ + G  LP 
Sbjct: 345 QT-GLDIRESYGQTETGLTCMVS-----KTMKIKPGYMGTAASCYDVQIIDDK-GNVLPP 397

Query: 385 NTPGELCVRSQ-----CVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIK 439
            T G++ +R +      +  GY +N ++TA  I +  +   GD G  D+DG    + R  
Sbjct: 398 GTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRAD 456

Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE---- 495
           ++I   G+++ P+E+E  L+ HP+V + AV+S PD   GE+  A VV+       +    
Sbjct: 457 DIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQL 516

Query: 496 -DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK 544
             ++   V S  A YK  R + FV  +PK+ +GKI R  L+DK  +   K
Sbjct: 517 TKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMSGK 566

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  272 bits (698), Expect = 7e-85
 Identities = 128/538 (23%), Positives = 232/538 (43%), Gaps = 60/538 (11%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKA--YTYAQVARDTRGFAKALRSLGLRKGQVVIVV 94
            L DF+ + A L+  K       +G+    TYA+V +  R     LR+LG+  G  V  +
Sbjct: 19  NLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATL 78

Query: 95  LPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV---SYAPIYEKVKG 151
             N   +      +   G V   ANP     E+   ++ A+ K+++   +  P+ E ++G
Sbjct: 79  GFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG 138

Query: 152 LGLP----IIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLW--IS------- 198
             L      +V+ E+  E  + + E +              D  +               
Sbjct: 139 E-LKTVQHFVVMDEKAPEGYLAYEEALGEEA----------DPVRVPERAACGMAYTTGT 187

Query: 199 ----KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHI------YGITGICCAT 248
               KGV+ +HR LV +  +        +  +   L ++P FH+      Y  T +    
Sbjct: 188 TGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVG--- 244

Query: 249 LRNKGKVVMMNRF-ELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAV 307
                K V+     +  + ++      VTF   VP + L+L          L    LR +
Sbjct: 245 ----AKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLK--TLRRL 298

Query: 308 MTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHS-----CITLTYGDPANPSA-GSKKNS 361
           +   +     L++ FE+   GV+V++ YGLTE S         ++ +  +     + K  
Sbjct: 299 VVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAK 356

Query: 362 VGFILPNLEVKFINPETGKSLPSN--TPGELCVRSQCVMQGYYNNEEETARTIDKNGWLH 419
            G  +P + ++  + E G+ +P +    GE+ ++   +  GYY NEE T   +  +G+  
Sbjct: 357 TGLPIPLVRLRVADEE-GRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFR 415

Query: 420 TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGE 479
           TGDI   D++G + I DR+K+LIK  G  ++  +LE  L+ HP V++AAVV++P  +  E
Sbjct: 416 TGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQE 475

Query: 480 IPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
            P A VV        E+     + +  A ++      F + IP++ +GK ++R L+++
Sbjct: 476 RPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQ 533

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  269 bits (691), Expect = 2e-83
 Identities = 117/544 (21%), Positives = 232/544 (42%), Gaps = 77/544 (14%)

Query: 46  AELYADKVAFV---EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYG 102
           A    +K+A +   +  + K +T+  +   +   A      G+ KG  V++ L +  ++ 
Sbjct: 66  ARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125

Query: 103 IVALGIMAAGGVFSGANPTAH---ASELKKQVDAADAKLIVSYA---------PIYEKVK 150
              LG+   G +     P  H     ++  +++ A  K+IV  A           + +  
Sbjct: 126 YCMLGLHKLGAIAV---PATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECG 182

Query: 151 GLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTD-LWIS---------KG 200
            + L    +G + +E  I++ + +E +       + +   K  D   +          K 
Sbjct: 183 DIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKM 242

Query: 201 VMLTHRNLVANLCSTL--FSVVPEMI-------GQVTTLGLIPFFHIYGITG--ICCATL 249
           V   +   + ++ +     +V  + +       G               + G  I     
Sbjct: 243 VEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGK-------CVWGKLYGQWIAGCA- 294

Query: 250 RNKGKVVM--MNRFELRAFLDALITHEVT--FAPIVPPIILSLVKDPIVDEFDLSKLQLR 305
                V +   +RFE +  L+    + VT   AP  P I   L+K+  +  ++ S L  +
Sbjct: 295 -----VFVYDYDRFEAKNMLEKASKYGVTTFCAP--PTIYRFLIKED-LSHYNFSTL--K 344

Query: 306 AVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFI 365
             + A  PL P++ + F +   G+++ E +G TE      T+     P    K  S+G  
Sbjct: 345 YAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATF-----PWMEPKPGSIGKP 398

Query: 366 LPNLEVKFINPETGKSLPSNTPGELCVRSQ-----CVMQGYYNNEEETARTIDKNGWLHT 420
            P  +++ ++ + G+       GE+ + +       +   Y  + E T  T   +G+ HT
Sbjct: 399 TPGYKIELMDRD-GRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHT 456

Query: 421 GDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEI 480
           GD+ ++D+DG ++ V R  ++IK  G++V P E+E+ L+ HP+V + A+  +PD   G++
Sbjct: 457 GDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQV 516

Query: 481 PAACVVMNPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
             A +V+  +   S+    ++ D V +  A YK  R++ FV  +PK+ SGKI R  ++DK
Sbjct: 517 IKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDK 576

Query: 538 MLEK 541
              +
Sbjct: 577 DQSQ 580

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  212 bits (543), Expect = 6e-62
 Identities = 112/582 (19%), Positives = 216/582 (37%), Gaps = 92/582 (15%)

Query: 31  PVPENVTLPDFVLQDAELYADKVA--FVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKG 88
              +  +L D V   A    +K +  F+     +  TY Q+ +  +  A  L++ G + G
Sbjct: 6   EYLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPG 65

Query: 89  QVVIVVLPNVAEYGIVALGIMAAGGV---FSGANPTAHASELKKQVDAADAKLIVSYAPI 145
             V+++           LG + AG +              + ++ V  +   +++  A  
Sbjct: 66  DRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADH 125

Query: 146 YEKVKG---------LGLPIIVLGEERIESAINWSEL-IEAADKAGNNFSNDDDVKQTDL 195
            +K            L +P I L    +  + +W    I++ D A   ++          
Sbjct: 126 IKKFTADELNTNPKFLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYT---------- 175

Query: 196 WIS------KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATL 249
             S      KGVM++H NL+ NL     S    M  +      +P  H  G+ G     +
Sbjct: 176 --SGSTMHPKGVMVSHHNLLDNLNKIFTSF--HMNDETIIFSWLPPHHDMGLIGCILTPI 231

Query: 250 RNKGKVVMM--NRFELR--AFLDALITHEVTFAPIVPP----IILSLVKDPIVDEFDLSK 301
               + +MM    F     ++L  +  ++ T +   P       +  +++   +  DLS 
Sbjct: 232 YGGIQAIMMSPFSFLQNPLSWLKHITKYKATISG-SPNFAYDYCVKRIREEKKEGLDLSS 290

Query: 302 LQLRAVMTAAAPLAPDLLSSFEKKF------PGVQVQEAYGLTEHSCITLTYGDP----- 350
                    A P+  + +  F + F              YGL E + + +T G P     
Sbjct: 291 W--VTAFNGAEPVREETMEHFYQAFKEFGFRKEA-FYPCYGLAEATLL-VTGGTPGSSYK 346

Query: 351 -------------ANPSAGSKKNSVGFI---LPNLEVKFINPETGKSLPSNTPGELCVRS 394
                         + +  +   S   +    P  EVK I+P+T      +  GE+ V+S
Sbjct: 347 TLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQS 406

Query: 395 QCVMQGYYNNEEETARTI--------DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKG 446
             V +GY+N  EET                +L TGD+G++  + ++++  RIK+LI   G
Sbjct: 407 NSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFL-HENELYVTGRIKDLIIIYG 465

Query: 447 FQVAPAELE-AILLTHPSVE--DAAVVSLPDEEAGEIPAACVVMNPNAKESE-DDIMDFV 502
               P ++E +++ +         A   + +E   ++   C V N    +   D++ + +
Sbjct: 466 KNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEI 525

Query: 503 ASNVA--TYKKVRVLHFVD--GIPKSHSGKIMRRILKDKMLE 540
              V      +V  +  +    +P + SGKI R   +  +L+
Sbjct: 526 FELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLD 567

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  181 bits (461), Expect = 3e-51
 Identities = 88/493 (17%), Positives = 166/493 (33%), Gaps = 81/493 (16%)

Query: 13  LAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFV-------EAVSGKAYT 65
           + ++H   H      P        +LP  +   A L     AF                T
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLT 60

Query: 66  YAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV---FSGANPTA 122
           ++Q+ R T   A+ L   G   G  V++  P   EY +  LG + AG +    S      
Sbjct: 61  WSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGV 119

Query: 123 HASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGN 182
                   +  +    I++ +   + V         +     ES  +  E+      A N
Sbjct: 120 TDERSDSVLSDSSPVAILTTSSAVDDVVQH------VARRPGESPPSIIEVDLLDLDAPN 173

Query: 183 NFSNDDDVKQTDLWI----------SKGVMLTHRNLVANLCSTL----FSVVPEMIGQVT 228
            ++   + +                  GV+++H+N+  N    +                
Sbjct: 174 GYT-FKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSA 232

Query: 229 TLGLIPFFHIYGITGICCATLRNKGKVVMM--NRFELR---AFLDALITHEVTFAPIVPP 283
            +  +PF+H  G+    CA +      V+     F L+    ++  + +    F+   P 
Sbjct: 233 LVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSF-LQRPARWMHLMASDFHAFSA-APN 290

Query: 284 ----IILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQE-----A 334
               +      D  +   DL    +  +++ +  +    +  F  +F    +QE     +
Sbjct: 291 FAFELAARRTTDDDMAGRDLG--NILTILSGSERVQAATIKRFADRFARFNLQERVIRPS 348

Query: 335 YGLTEHSCI------------------TLTYGDPANPSAGSKKNSVGFILPN-LEVKFIN 375
           Y L E +                    +L+ G     + G   + + ++LP    V+ ++
Sbjct: 349 YWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVD 408

Query: 376 PETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI-----------DKNGWLHTGDIG 424
            +T    P  T GE+ V    V  GY+   +E+ RT             +  WL TGD G
Sbjct: 409 SDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSG 468

Query: 425 YIDDDGDIFIVDR 437
           ++  DG +FI+ R
Sbjct: 469 FV-TDGKMFIIGR 480

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score =  104 bits (262), Expect = 5e-24
 Identities = 77/354 (21%), Positives = 133/354 (37%), Gaps = 33/354 (9%)

Query: 199 KGVMLTHRNLVANLCST--LFSVVPE-MIGQVTTLGLIPF----FHIYGITGICCATLRN 251
           KGV ++  NL +        F V    +           F      +Y         L++
Sbjct: 159 KGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFS---FDLSVMDLYP-------CLQS 208

Query: 252 KGKVVMMNRFELR---AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVM 308
            G +  + +  +       + L    +      P  +   + DP   +  L        M
Sbjct: 209 GGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLP--HADTFM 266

Query: 309 TAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGD-PANPSAGSKKNSVGFILP 367
                L   +  +  ++FP  ++   YG TE + + +T  +   +  + S+   VGF  P
Sbjct: 267 FCGEVLPVSVAKALLERFPKAKIFNTYGPTE-ATVAVTSVEITNDVISRSESLPVGFAKP 325

Query: 368 NLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA-RTI-DKNGWL-HTGDIG 424
           ++ + FI  E G+ LP    GE+ +    V +GY    E T       +  W   TGD G
Sbjct: 326 DMNI-FIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAG 384

Query: 425 YIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAAC 484
           +I D G IF   R+   IK  G+++   E+E  +     V  A V+        E   A 
Sbjct: 385 FIQD-GQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAA 443

Query: 485 VVMNPNAKESE----DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
           +V   +  E E      I   +A+++  Y   R   + D I  + +GKI R+ +
Sbjct: 444 IVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRI 497

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score =  103 bits (260), Expect = 9e-24
 Identities = 109/530 (20%), Positives = 189/530 (35%), Gaps = 78/530 (14%)

Query: 46  AELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
           A+  AD   +     G+  TY Q+ RD+   A  + SL L     V+V      +  +  
Sbjct: 14  AQTQADFPVYD--CLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDM-LAT 70

Query: 106 -LGIMAAGG--VFSGANP--TAHASE-LKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVL 159
            + +  +G   +     P     A E +   ++ A   LI++       ++G+   ++ L
Sbjct: 71  FVALTKSGHAYI-----PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI--SLVSL 123

Query: 160 GEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLW--I--S------KGVMLTHRNLV 209
                         IE+A  A   +     VK  D +  I  S      KGV ++H NL+
Sbjct: 124 ------------SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLL 171

Query: 210 ANLCS----TLFSVVPE-MIGQVTTLGLIPF----FHIYGITGICCATLRNKGKVVMMNR 260
           +          F V  +  +          F     +          TL   G +  + +
Sbjct: 172 SFTNWMIEDAAFDVPKQPQMLAQPPYS---FDLSVMYWAP-------TLALGGTLFALPK 221

Query: 261 FELR---AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPD 317
             +         +    V      P      +      +  +    L         L   
Sbjct: 222 ELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMP--ALTHFYFDGEELTVS 279

Query: 318 LLSSFEKKFPGVQVQEAYGLTEHSCITLTYGD-PANPSAGSKKNSVGFILPNLEVKFINP 376
                 ++FP  ++  AYG TE + + L+  +          +  +G+  P+    +I  
Sbjct: 280 TARKLFERFPSAKIINAYGPTE-ATVALSAIEITREMVDNYTRLPIGYPKPDSPT-YIID 337

Query: 377 ETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA-RTIDKNG-WL-HTGDIGYIDDDGDIF 433
           E GK L S   GE+ V    V +GY NN E+TA       G    HTGDIG + +D  + 
Sbjct: 338 EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILL 397

Query: 434 IVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIP--AACVVMNPNA 491
              R+   IKY G+++   ++   L   P V  A  V   ++E  ++    A +V+    
Sbjct: 398 YGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKE-HKVQNLLAYIVVKDGV 456

Query: 492 KESED-------DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
           KE  D        I   V  ++ +Y       + D +P + +GKI  + L
Sbjct: 457 KERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTL 506

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score =  102 bits (256), Expect = 3e-23
 Identities = 72/354 (20%), Positives = 129/354 (36%), Gaps = 33/354 (9%)

Query: 199 KGVMLTHRNLVANLCST--LFSVVPE-MIGQVTTLGLIPF----FHIYGITGICCATLRN 251
           KGV +T+  LV+        F++    +           F      IY        +L  
Sbjct: 160 KGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFS---FDLSVMDIYP-------SLVT 209

Query: 252 KGKVVMMNRFELR---AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVM 308
            G +  +++  +        +L   ++      P      + +    E  L    ++  +
Sbjct: 210 GGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLP--NMKTFL 267

Query: 309 TAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGD-PANPSAGSKKNSVGFILP 367
                L  ++     ++FP   +   YG TE + + +T            K   VG+   
Sbjct: 268 FCGEVLPNEVARKLIERFPKATIMNTYGPTE-ATVAVTGIHVTEEVLDQYKSLPVGYCKS 326

Query: 368 NLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA-RTIDKNG-WLH-TGDIG 424
           +  +  I  E G   P    GE+ +    V  GY  + E T       +G   + TGD G
Sbjct: 327 DCRL-LIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAG 385

Query: 425 YIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAAC 484
           Y+++ G +F   R+   IK  G+++   E+E  L     VE A +V +   E  +   A 
Sbjct: 386 YVEN-GLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAV 444

Query: 485 VVMNPNAKESE----DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
           VV   ++ E E      I   +   +  Y   R   +   IP + +GK+ R+ L
Sbjct: 445 VVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKL 498

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score =  101 bits (253), Expect = 1e-22
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 17/172 (9%)

Query: 377 ETGKSLPSNTPGELCVR----SQCVMQGYYNNEEETARTIDK-----NGWLHTGDIGYID 427
             G      T G L +      Q   +  + + E   R              +GD    D
Sbjct: 451 NEGHPQEGATEGNLVITDSWPGQ--ARTLFGDHE---RFEQTYFSTFKNMYFSGDGARRD 505

Query: 428 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVM 487
           +DG  +I  R+ +++   G ++  AE+E+ L+ HP + +AAVV +P    G+   A V +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTL 565

Query: 488 NPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
           N   + S +   ++ ++V   +       VLH+ D +PK+ SGKIMRRIL+ 
Sbjct: 566 NHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 617

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 20/103 (19%)

Query: 50  ADKVAFV----EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
            D+ A +    +    K  +Y ++ RD   FA  L  LG++KG VV + +P V E   VA
Sbjct: 90  GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE-AAVA 148

Query: 106 LGIMAA----GG----VFSGANPTAHASELKKQVDAADAKLIV 140
              M A    G     +F G +P A    +   +  + ++L++
Sbjct: 149 ---MLACARIGAVHSVIFGGFSPEA----VAGCIIDSSSRLVI 184

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 98.9 bits (247), Expect = 9e-22
 Identities = 100/553 (18%), Positives = 183/553 (33%), Gaps = 101/553 (18%)

Query: 28  PAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQV-ARDTRGFAKALRSLGLR 86
           PA        L  +  +      D  A   +  G+  +Y ++     R  A+ L+  G  
Sbjct: 457 PAQAHET-KPLTYWFKEAVNANPDAPALTYS--GQTLSYRELDEEANR-IARRLQKHGAG 512

Query: 87  KGQVVIVVLPNVAEYGIVA-LGIMAAGGVFSGANP--TAHASE-LKKQVDAADAKLIVSY 142
           KG VV +      E  ++  LG++ AG  +    P       + +   +  + A  ++++
Sbjct: 513 KGSVVALYTKRSLEL-VIGILGVLKAGAAYL---PVDPKLPEDRISYMLADSAAACLLTH 568

Query: 143 APIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDD---VKQTDLWIS- 198
             + E+   L      L        I+     E          + +D   +  T    S 
Sbjct: 569 QEMKEQAAELPYTGTTL-------FIDDQTRFEEQASDPATAIDPNDPAYIMYT----SG 617

Query: 199 -----KGVMLTHRNLVANLCSTL--FSVVPE-MIGQVTTLGLIPF----FHIYGITGICC 246
                KG + TH N+   L   +   +   +     V+      F    F  Y       
Sbjct: 618 TTGKPKGNITTHANIQ-GLVKHVDYMAFSDQDTFLSVSNYA---FDAFTFDFYA------ 667

Query: 247 ATLRNKGKVVMMNRFELR---AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQ 303
            ++ N  ++++ +   L       D ++   V        +   L      D  +     
Sbjct: 668 -SMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLT-----DAGEDWMKG 721

Query: 304 LRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVG 363
           LR ++      +   +    +     ++   YG TE   +  T     +         +G
Sbjct: 722 LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTE-GTVFATAHVVHDLPDSISSLPIG 780

Query: 364 FILPNLEV----KFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA---------- 409
             + N  V    +          P    GELC+    V +GY N  + T           
Sbjct: 781 KPISNASVYILNEQSQL-----QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKP 835

Query: 410 -----RTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSV 464
                R         TGD+     DG I    RI + +K +G ++   E+E  L  +P V
Sbjct: 836 GETLYR---------TGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGV 886

Query: 465 EDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRV-LHFV--DGI 521
           +DA VV+   E       A +V     + S +D+   +   +  Y    V   F   D +
Sbjct: 887 KDAVVVADRHESGDASINAYLV--NRTQLSAEDVKAHLKKQLPAYM---VPQTFTFLDEL 941

Query: 522 PKSHSGKIMRRIL 534
           P + +GK+ +R+L
Sbjct: 942 PLTTNGKVNKRLL 954

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 95.0 bits (237), Expect = 9e-21
 Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 25/191 (13%)

Query: 366 LPNLEVKFINPETGKSLPSN-TPGELCVR----SQCVMQGYYNNEEETARTID-----KN 415
              ++   ++P TG+ L ++   G L V+    S    +  + N +   R +D       
Sbjct: 448 FFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSF--ARTIWKNHD---RYLDTYLNPYP 502

Query: 416 GWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDE 475
           G+  TGD    D DG I+I+ R+ +++   G +++ AE+EA ++  P V + AVV   D+
Sbjct: 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 562

Query: 476 EAGEIPAACVVMNPNAKESED----------DIMDFVASNVATYKKVRVLHFVDGIPKSH 525
             G+  AA VV+   +  S             ++  V  ++  +   +++  VD +PK+ 
Sbjct: 563 LTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTR 622

Query: 526 SGKIMRRILKD 536
           SGKIMRRIL+ 
Sbjct: 623 SGKIMRRILRK 633

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 41.0 bits (97), Expect = 9e-04
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 21/104 (20%)

Query: 50  ADKVAFV----EAVSGKAYTYAQVARDTRGFAKALR-SLGLRKGQVVIVVLPNVAEYGIV 104
            +K A +    E   G + TY ++  +    A+ L  S+G+RKG  V V +P V E  I+
Sbjct: 96  PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE-AII 154

Query: 105 ALGIMAA----GG----VFSGANPTAHASELKKQVDAADAKLIV 140
               + A    G     VF+G +  +    L+ +++  D+K+++
Sbjct: 155 T---LLAISRIGAIHSVVFAGFSSNS----LRDRINDGDSKVVI 191

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 90.2 bits (225), Expect = 3e-19
 Identities = 79/353 (22%), Positives = 142/353 (40%), Gaps = 44/353 (12%)

Query: 199 KGVMLTHRNLVANLCSTL---FSVVPE-MIGQVTTLGLIPF----FHIYGITGICCATLR 250
           KG ML H+ +  NL        +V  +  IGQ  ++    F    + ++         L 
Sbjct: 198 KGTMLEHKGIS-NLKVFFENSLNVTEKDRIGQFASIS---FDASVWEMFM-------ALL 246

Query: 251 NKGKVVMMNRFELR---AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAV 307
               + ++ +  +     F   +   E+T   + P  ++ L  + I        L ++ +
Sbjct: 247 TGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPERI--------LSIQTL 298

Query: 308 MTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILP 367
           +TA +  +P L++ +      V    AYG TE + I  T    A          +G  + 
Sbjct: 299 ITAGSATSPSLVNKW---KEKVTYINAYGPTE-TTICATTW-VATKETIGHSVPIGAPIQ 353

Query: 368 NLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA-RTID----KNGWL-HTG 421
           N ++ +I  E  +       GELC+  + + +GY+   E T+ + +D        L  TG
Sbjct: 354 NTQI-YIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTG 412

Query: 422 DIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIP 481
           D      DG+I  + RI   +K +G +V   E+E+ILL H  + + AV    D +     
Sbjct: 413 DQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYL 472

Query: 482 AACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
            A  V         + +  F +  + TY        +D +P + +GKI R+ L
Sbjct: 473 CAYFV--SEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 523

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 89.5 bits (223), Expect = 5e-19
 Identities = 88/550 (16%), Positives = 162/550 (29%), Gaps = 122/550 (22%)

Query: 13  LAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARD 72
            +    +  +  S++  + +  + T+     + A L+  + A  +     +  Y Q+   
Sbjct: 4   DSFFRKKAIVRMSQNSLLDLYAHPTVVARFSEMAALHPHREAIRDR--FGSVDYRQLLDS 61

Query: 73  TRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA-LGIMAAGGVFSGANPTAHASELKKQV 131
               +  L     + G  + V      E  I   L I+ +G  +   +    A+   +  
Sbjct: 62  AEQLSDYLLEHYPQPGVCLGVYGEYSRES-ITCLLAILLSGHHYLYIDLKQPAAWNAELC 120

Query: 132 DAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKA------GNNFS 185
              D +LI+  +       GL  P + +       A        A   A      G    
Sbjct: 121 RQVDCRLILDCSTTPTPANGL--PCVPVRHLPAAPASVARPCFAADQIAYINFSSG---- 174

Query: 186 NDDDVKQTDLWIS----KGVMLTHRNLVANLC--STLFSVVPEM-IGQVTTLGLIPF--- 235
                       +    K +  TH   +  LC   +  +  P+M     + L    F   
Sbjct: 175 ------------TTGRPKAIACTHAG-ITRLCLGQSFLAFAPQMRFLVNSPLS---FDAA 218

Query: 236 -FHIYGITGICCATLRNKGKVVMMNRFEL--RAFLDALITHEVTFAPIVPPIILSLVKDP 292
              I+G        L N G  V+ +   L        +       A +   +  + + D 
Sbjct: 219 TLEIWG-------ALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASL-FNTLVDL 270

Query: 293 IVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE---HSCI-TLTYG 348
             D        LR ++T    L+   +     + P + +   YG TE    +C   +T  
Sbjct: 271 DPDCLG----GLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDD 326

Query: 349 DPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSN-TPGELCVRSQCVMQGYYNNEEE 407
           D            +G  +    V  +  E G+ +      GE+      + QGY N+   
Sbjct: 327 DLEEDDI-----PIGKAIAGTAV-LLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAAR 380

Query: 408 TA----------------RTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAP 451
           T                 R         TGD    D+ G +  + R    +K  G+++  
Sbjct: 381 TRASFVELPYRGRLLRAYR---------TGDRARYDEQGRLRFIGRGDGQVKLNGYRLDL 431

Query: 452 AELEAILLTHPSVEDAAVVSLPDE-----------EAGE-------------IPAACVVM 487
             LE      P + D A++                +A                P ACV +
Sbjct: 432 PALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLRQLPTWQRPHACVRV 491

Query: 488 -----NPNAK 492
                  + K
Sbjct: 492 EALPLTAHGK 501

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 89.2 bits (222), Expect = 6e-19
 Identities = 81/553 (14%), Positives = 165/553 (29%), Gaps = 75/553 (13%)

Query: 29  AVPVPENVTLPDFVLQDAELYADKVAFV--------EAVSGKAYTYAQV-ARDTRGFAKA 79
           +      V    ++   A+ + +  A          + +  + +TY ++     +  A  
Sbjct: 13  SAQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQ-VANL 71

Query: 80  LRSLGLRKGQVVIVVLPNVAEYGIVA-LGIMAAGGVFSGANPTAHASELKKQVDAADAKL 138
           +    L  G+ + V L           +GIM +G  +               +  + A +
Sbjct: 72  IIHASL-HGRAIAVSLDRSLIA-FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAM 129

Query: 139 IVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLW-- 196
                  ++ V+      ++  + +              + +  + S+  +    +L   
Sbjct: 130 AFVCDNNFDGVELPPETKVLDTKNQSF----------IENLSTQDTSDILNNYPENLDAY 179

Query: 197 -I--S------KGVMLTHRNLVANLCST---LFSVVPEMIGQVTTLGLIPFFHIYG---- 240
            +  S      KGV ++  NL  +       L   V     ++  +G             
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLS-SFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVH 238

Query: 241 ITGICCATLRNKGKVVMMNRFELR-AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDL 299
           I  +  A  R     V   R  +            VT A IVP ++      P  ++   
Sbjct: 239 IGEMFLA-WRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP--EDA-- 293

Query: 300 SKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKK 359
               L  +      + P     +      V +   YG TE   I  + G        S  
Sbjct: 294 --PHLVYLGVGGEKMTPRTQQIW-SSSDRVALVNVYGPTE-VTIGCSAGRI---LPDSDT 346

Query: 360 NSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLH 419
             +G  L +     + P + + +     GEL +    V  GY N  +           ++
Sbjct: 347 RCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMY 406

Query: 420 -TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAG 478
            TGDI  +D D  I  + R  E +K +G ++   E+  ++ +    +   V  L +    
Sbjct: 407 RTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGT 466

Query: 479 EIP--AACVVMNPNAKESEDDIMDFVASNVATYKKVR-----VL-------HFV--DGIP 522
                 + V    +      ++     +       +R      L         +    IP
Sbjct: 467 SKQFLVSFVA--SSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIP 524

Query: 523 -KSHSGKIMRRIL 534
            +  S K   + L
Sbjct: 525 LRDTSAKTDAKAL 537

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 82.5 bits (203), Expect = 3e-17
 Identities = 33/250 (13%), Positives = 68/250 (27%), Gaps = 34/250 (13%)

Query: 199 KGVMLTHRNLVANLCSTLFSVVPE-MIGQVTTLGLIP-FFHIYGITGICCATLRN----- 251
           K V+     + A +   +             TL  IP   HI G      A         
Sbjct: 107 KYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166

Query: 252 -------------KGKVVMMNRFE---LRAFLDALITHEVTFAPIVPPIILSLVKDPIVD 295
                        +G    + ++    +    + L+  ++ F    PP++  L+K P V 
Sbjct: 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV 226

Query: 296 EFDLSKLQLRAVMTAAAPLAPDLLSSF-EKKFPGVQVQEAYGLTEHSCITLTYGDPANPS 354
                 L    +      L  D +     +  P  +   +YG T    ++ +    +   
Sbjct: 227 LQMKQSL--AQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQ 284

Query: 355 AGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRS---QCVMQGYYNNEEETART 411
                       P +    ++  T +++     G + V               +    R 
Sbjct: 285 QVI----YDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPWAFYPRVAERDTAI-RL 339

Query: 412 IDKNGWLHTG 421
              +G+    
Sbjct: 340 PGVSGFAGDR 349

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 5e-09
 Identities = 68/524 (12%), Positives = 131/524 (25%), Gaps = 209/524 (39%)

Query: 20  EHIFRSRHPAVPV----------PENVTLPDFV---LQ-DAELYADKVAFV-EAVSGKAY 64
           +HI  S+                 E + +  FV   L+ + +     +       S    
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 65  TYAQ----VARDTRGFAK----------ALRS--LGLRKGQVVIVVLPNVAEYGIVALGI 108
            Y +    +  D + FAK           LR   L LR  + V++        G      
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-------DG------ 157

Query: 109 MAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAI 168
           +   G  SG           K   A D                      V    +++  +
Sbjct: 158 V--LG--SG-----------KTWVALD----------------------VCLSYKVQCKM 180

Query: 169 NWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVT 228
           +              F           W++     +   ++  L   L+ + P    +  
Sbjct: 181 D-----------FKIF-----------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 229 TLGLIPFFHIYGITGICCATLR-NKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILS 287
               I               LR +  +  +    + + + + L             ++L 
Sbjct: 219 HSSNIK--------------LRIHSIQAELRRLLKSKPYENCL-------------LVLL 251

Query: 288 LVKDP-IVDEFDLS-KLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEH----- 340
            V++    + F+LS K+ L  + T    +   L ++               LT       
Sbjct: 252 NVQNAKAWNAFNLSCKI-L--LTTRFKQVTDFLSAATTTHISLDHHSM--TLTPDEVKSL 306

Query: 341 --SCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVM 398
               +     D                LP  EV   NP        +   E         
Sbjct: 307 LLKYLDCRPQD----------------LPR-EVLTTNP-----RRLSIIAESI------- 337

Query: 399 QGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAIL 458
                  +  A     + W H                D++  +I+     + PAE   + 
Sbjct: 338 ------RDGLATW---DNWKHVN-------------CDKLTTIIESSLNVLEPAEYRKMF 375

Query: 459 LTHPSVEDAAVVSLPDEEAGEIPAA--CVVMNPNAKESEDDIMD 500
                 +  +V   P      IP     ++     K     +++
Sbjct: 376 ------DRLSV--FPPSA--HIPTILLSLIWFDVIKSDVMVVVN 409

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 53/323 (16%), Positives = 102/323 (31%), Gaps = 99/323 (30%)

Query: 285 ILSLVKDPIVDEFDLSKLQ--LRAVMTAAAP----LAPD-------LLSSFEKK------ 325
           ILS+ +D  VD FD   +Q   +++++        ++ D       L  +   K      
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 326 -FPGVQVQEAYG-LTEH--------SCITLTYGDPANPSAGS----KKNSVGFILPNLEV 371
            F    ++  Y  L           S +T  Y +  +          K +V  + P L++
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 372 KF----INPE----------TGKS-LPSNTPGELCVRS---QCVMQ--------GYYNNE 405
           +     + P           +GK+ +  +        S   QC M            N+ 
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDV-----CLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 406 EET-------ARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAIL 458
           E            ID N W    D           I   ++ L+K K ++     L  ++
Sbjct: 196 ETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---L--LV 249

Query: 459 LTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK---ESED-DIMDFVASNVATYKKVRV 514
           L +  V++A         A          N + K    +    + DF+  + AT   + +
Sbjct: 250 LLN--VQNAKAW-----NA---------FNLSCKILLTTRFKQVTDFL--SAATTTHISL 291

Query: 515 LHFVDGIPKSHSGKIMRRILKDK 537
            H    +       ++ + L  +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCR 314

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 45/254 (17%), Positives = 93/254 (36%), Gaps = 45/254 (17%)

Query: 297 FDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAG 356
            D  +  L+ ++  A P   +     E+    V+   ++G+TE +   + +        G
Sbjct: 201 IDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGMTEMNGPGVAFECQEQN--G 257

Query: 357 SKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNG 416
                  +++   E+  I+PETG+ +P    GEL +               T  T+D+  
Sbjct: 258 MHFWEDCYLV---EI--IDPETGEPVPEGEIGELVL---------------T--TLDREM 295

Query: 417 W----LHTGDIGYIDDD----GDIF-----IVDRIKELIKYKGFQVAPAELEAILLTHPS 463
                  T D+  I       G        I  R  ++   KG  + P ++E IL+  P 
Sbjct: 296 MPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPE 355

Query: 464 VEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDF---VASNVATYKKVRV-LHFVD 519
           +    +++L      +     V ++  + ++  ++      +   +     V   +  V 
Sbjct: 356 LGSNYLITLETVNNQDEMIVEVELSDLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVK 415

Query: 520 --GIPKSHSGKIMR 531
              +P+S  GK +R
Sbjct: 416 KGSLPQS-EGKAVR 428

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 47/257 (18%), Positives = 89/257 (34%), Gaps = 50/257 (19%)

Query: 297 FDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAG 356
            D ++  L+  +  A P    L +  E +  G+   + YGL+E     +           
Sbjct: 207 MDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVACECVETKD-- 263

Query: 357 SKKNSVGFILPN----LEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI 412
                 G ++       E+  I+P TG+ LP  + GEL                 T  ++
Sbjct: 264 ------GPVIWEDHFYPEI--IDPVTGEVLPDGSQGELVF---------------T--SL 298

Query: 413 DKNGW----LHTGDIGYID-DDGDIF-----IVDRIKELIKYKGFQVAPAELEAILLTHP 462
            K         T D+  +             I  R  +++  +G  V P+++E I++  P
Sbjct: 299 TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALP 358

Query: 463 SVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDD-----IMDFVASNVATYKKVRV-LH 516
            +     ++L  +   +     V +   A  S  D     +   +   + T   V   + 
Sbjct: 359 LLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVT 418

Query: 517 FVD--GIPKSHSGKIMR 531
            +   GIP + +GK  R
Sbjct: 419 VLAAGGIPATATGKARR 435

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 50/251 (19%), Positives = 86/251 (34%), Gaps = 41/251 (16%)

Query: 297 FDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAG 356
            D  +  LR  +  A P   D+  + E++  G+   + YGL+E     +          G
Sbjct: 205 LDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVMGPGVASECVETKD-G 262

Query: 357 SKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNG 416
                  F     E+  I+PETG+ LP    GEL                 T  ++ K  
Sbjct: 263 PTIWEDHFYP---EI--IDPETGEVLPDGELGELVF---------------T--SLTKEA 300

Query: 417 W----LHTGDIGYID-DDGDIF-----IVDRIKELIKYKGFQVAPAELEAILLTHPSVED 466
                  T D+  +             I  R  +++  +G  V P ++E  LL   ++  
Sbjct: 301 LPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAP 360

Query: 467 AAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDF---VASNVATYKKVRV-LHFVD--G 520
              + L  E   ++    V   P        I      +A ++ +   V   ++ +   G
Sbjct: 361 HYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNG 420

Query: 521 IPKSHSGKIMR 531
           I +S  GK  R
Sbjct: 421 IERS-VGKARR 430

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	544
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.96
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.56
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.56
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.54
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.41
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.38
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.76
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.47
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	91.21
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	81.81
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	81.41

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=2.7e-84  Score=669.84  Aligned_cols=519  Identities=39%  Similarity=0.692  Sum_probs=454.6

Q ss_pred             CcceeeecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Q 039837           18 DEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPN   97 (544)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n   97 (544)
                      ++..++.+..++.+.+..+|+.+.|.++|+++|+++|+++..+++++||+||.++++++|++|++.|+++||+|+++++|
T Consensus         4 ~~~~i~~~~~~~~~~p~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~   83 (536)
T 3ni2_A            4 QEEFIFRSKLPDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPS   83 (536)
T ss_dssp             -CCCCBCCSSCCCCCCSSCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS
T ss_pred             ccceEEecCCCCCCCCCCCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence            44567888888888888899999999999999999999987667899999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhc----CCCcEEEecccccccccCHHHH
Q 039837           98 VAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKG----LGLPIIVLGEERIESAINWSEL  173 (544)
Q Consensus        98 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  173 (544)
                      ++++++++|||+++|++++|+++.++.+++.++++.++++++|++....+.+..    ...+++.++. .......+.++
T Consensus        84 ~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  162 (536)
T 3ni2_A           84 SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDS-APDGCLHFSEL  162 (536)
T ss_dssp             SHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSC-CCTTCEETHHH
T ss_pred             cHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecC-CCCCccCHHHH
Confidence            999999999999999999999999999999999999999999999876655443    2344554442 22223334444


Q ss_pred             HHhhhh------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccC--CcccCccEEEEecchhHHHHHHHHH
Q 039837          174 IEAADK------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV--PEMIGQVTTLGLIPFFHIYGITGIC  245 (544)
Q Consensus       174 ~~~~~~------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~g~~~~~  245 (544)
                      ......      ........+.+||||||.||||++||+++.+.+........  ..+..++++++.+|++|.+++...+
T Consensus       163 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~  242 (536)
T 3ni2_A          163 TQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIM  242 (536)
T ss_dssp             HTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTH
T ss_pred             hhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHH
Confidence            332111      11233346789999999999999999999988766543221  2577899999999999999987778


Q ss_pred             HhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhh
Q 039837          246 CATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKK  325 (544)
Q Consensus       246 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~  325 (544)
                      +.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......+++++|.  +++||+++++++.++|.+.
T Consensus       243 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~--i~~gGe~l~~~~~~~~~~~  320 (536)
T 3ni2_A          243 LCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRM--IKSGGAPLGKELEDTVRAK  320 (536)
T ss_dssp             HHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCE--EEEESSCCCHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceE--EEECCCCCCHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999987766777888888  9999999999999999999


Q ss_pred             cCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCCh
Q 039837          326 FPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNE  405 (544)
Q Consensus       326 ~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~  405 (544)
                      ||++++++.||+||++.+++.+............+++|+|+++++++|+|++++.+++.|+.|||+|+|++++.|||++|
T Consensus       321 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p  400 (536)
T 3ni2_A          321 FPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDP  400 (536)
T ss_dssp             CTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCH
T ss_pred             CCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCCh
Confidence            99999999999999997655432111122445678899999999999999888999999999999999999999999999


Q ss_pred             hhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEE
Q 039837          406 EETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACV  485 (544)
Q Consensus       406 ~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v  485 (544)
                      +.|.+.|+.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.+++++
T Consensus       401 ~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~v  480 (536)
T 3ni2_A          401 EATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFV  480 (536)
T ss_dssp             HHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEE
Confidence            99999998999999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             EeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          486 VMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       486 ~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      +..++...+.++++++++++|+.|++|..++++++||+|++||++|++|++++.
T Consensus       481 v~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~  534 (536)
T 3ni2_A          481 VKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLA  534 (536)
T ss_dssp             EECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC--
T ss_pred             EecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhc
Confidence            998888889999999999999999999999999999999999999999999875

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1.9e-81  Score=649.45  Aligned_cols=517  Identities=30%  Similarity=0.460  Sum_probs=445.8

Q ss_pred             cceeeecCCCCCCCCCCCCHHH-HHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Q 039837           19 EEHIFRSRHPAVPVPENVTLPD-FVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPN   97 (544)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~l~~-~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n   97 (544)
                      ...++.+..+....+...|+.+ .|.++++++ +++|+++...++++||+||.++++++|++|++.|+++||+|+++++|
T Consensus         8 ~~~~~~~~~~~~~~p~~~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n   86 (548)
T 2d1s_A            8 ENIVVGPKPFYPIEEGSAGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSEN   86 (548)
T ss_dssp             TTSEECCCCSSCCCSSCHHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSS
T ss_pred             cceEecCCCCCCCCCCcCcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC
Confidence            3345666666666666679999 899999999 99999985446899999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC------CCcEEEeccccc-ccccCH
Q 039837           98 VAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL------GLPIIVLGEERI-ESAINW  170 (544)
Q Consensus        98 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~  170 (544)
                      +++++++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+...      ...++.++.... .....+
T Consensus        87 ~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (548)
T 2d1s_A           87 CEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCL  166 (548)
T ss_dssp             CTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBH
T ss_pred             chhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccH
Confidence            9999999999999999999999999999999999999999999998876554331      123333332110 112335


Q ss_pred             HHHHHhhhh-------cC-----C-CCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccC-CcccCccEEEEecchh
Q 039837          171 SELIEAADK-------AG-----N-NFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV-PEMIGQVTTLGLIPFF  236 (544)
Q Consensus       171 ~~~~~~~~~-------~~-----~-~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~p~~  236 (544)
                      .++......       ..     . .....+.+||||||.||||++||+++.+.+.+....+. .++.+++++++.+|++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  246 (548)
T 2d1s_A          167 DTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFH  246 (548)
T ss_dssp             HHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred             HHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHH
Confidence            555443210       01     1 22345689999999999999999999998877765511 2678899999999999


Q ss_pred             HHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCH
Q 039837          237 HIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAP  316 (544)
Q Consensus       237 ~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~  316 (544)
                      |.+|+...++.++ .|+++++.+.+++..+++.++++++|+++++|+++..|.+.......++++++.  +++||+++++
T Consensus       247 h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~--i~~gG~~l~~  323 (548)
T 2d1s_A          247 HGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVE--IASGGAPLSK  323 (548)
T ss_dssp             SHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCE--EEECSSCCCH
T ss_pred             HHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeE--EEEcCccCCH
Confidence            9999866677777 999999999899999999999999999999999999999876555566777777  9999999999


Q ss_pred             hHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEeccc
Q 039837          317 DLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQC  396 (544)
Q Consensus       317 ~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~  396 (544)
                      ++.++|.+.|+++.+++.||+||++.+++...     ......+++|+|+++++++|+|++++++++.|+.|||+++|++
T Consensus       324 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~-----~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~  398 (548)
T 2d1s_A          324 EVGEAVARRFNLPGVRQGYGLTETTSAIIITP-----EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPM  398 (548)
T ss_dssp             HHHHHHHHHTTCSCCEEEEECGGGSSEEEECC-----TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTT
T ss_pred             HHHHHHHHHcCCCceeeccccccccceeeecC-----cccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHH
Confidence            99999999998899999999999987665532     1235668899999999999999878999999999999999999


Q ss_pred             ccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCC
Q 039837          397 VMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEE  476 (544)
Q Consensus       397 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~  476 (544)
                      ++.|||++|+.|...|+.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.
T Consensus       399 v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~  478 (548)
T 2d1s_A          399 LMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPV  478 (548)
T ss_dssp             SCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETT
T ss_pred             HhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCC
Confidence            99999999999999998899999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCcee-EEEEeecCCCCCCcccchHHHHHHHHHhhhC
Q 039837          477 AGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHSGKIMRRILKDKMLEKMRK  544 (544)
Q Consensus       477 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~~~~~P~t~~GKi~r~~l~~~~~~~~~~  544 (544)
                      .|+.+++++++.++...+.++++++++++|+.+++|. .++++++||+|++||++|++|++++.+.|++
T Consensus       479 ~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~  547 (548)
T 2d1s_A          479 AGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVAK  547 (548)
T ss_dssp             TEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC--
T ss_pred             CCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhhc
Confidence            8889999999988777788999999999999999999 8999999999999999999999999988764

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.8e-80  Score=643.29  Aligned_cols=512  Identities=32%  Similarity=0.504  Sum_probs=338.0

Q ss_pred             eeecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEE---EccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC
Q 039837           22 IFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFV---EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNV   98 (544)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~---~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~   98 (544)
                      +...+.+..+.+ ..|+.+.|.++|+++|+++|++   +...++++||+||.++++++|++|++.|+++||+|+++++|+
T Consensus         7 ~~~~~~~~~~~~-~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~   85 (550)
T 3rix_A            7 IKKGPAPFYPLE-DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS   85 (550)
T ss_dssp             SEECCCCSSCCC-CSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC
T ss_pred             eeeCCCCCCCcc-cCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence            444555555555 5699999999999999999965   544468999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-----CCcE-EEeccc-ccccccCHH
Q 039837           99 AEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-----GLPI-IVLGEE-RIESAINWS  171 (544)
Q Consensus        99 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~~-~~~~~~-~~~~~~~~~  171 (544)
                      +++++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+...     .... +.++.. .......+.
T Consensus        86 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (550)
T 3rix_A           86 LQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMY  165 (550)
T ss_dssp             TTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHH
T ss_pred             ccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccHH
Confidence            999999999999999999999999999999999999999999998876655332     1233 333221 222344555


Q ss_pred             HHHHhhhhcC-------------CCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccC-CcccCccEEEEecchhH
Q 039837          172 ELIEAADKAG-------------NNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV-PEMIGQVTTLGLIPFFH  237 (544)
Q Consensus       172 ~~~~~~~~~~-------------~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~  237 (544)
                      .+........             ....+.+.+||||||.||||++||+++.+.+.+....+. .++.+++++++.+|++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~  245 (550)
T 3rix_A          166 TFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH  245 (550)
T ss_dssp             HHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred             HHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHH
Confidence            5544322110             112235679999999999999999999988877665421 26788999999999999


Q ss_pred             HHHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHh
Q 039837          238 IYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPD  317 (544)
Q Consensus       238 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~  317 (544)
                      .+|+ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++++++.  +++||++++++
T Consensus       246 ~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~--i~~gG~~l~~~  322 (550)
T 3rix_A          246 GFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHE--IASGGAPLSKE  322 (550)
T ss_dssp             HHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCE--EEECSSCCCHH
T ss_pred             HHHH-HHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccE--EEEecCCCCHH
Confidence            9998 56778899999999999999999999999999999999999999999987766777888887  99999999999


Q ss_pred             HHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccc
Q 039837          318 LLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCV  397 (544)
Q Consensus       318 ~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~  397 (544)
                      +.++|.+.|+...+++.||+||++..++...     ......+++|+|+++++++|+|++++++++.|+.|||+|+|+++
T Consensus       323 ~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v  397 (550)
T 3rix_A          323 VGEAVAKRFHLPGIRQGYGLTETTSAILITP-----EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMI  397 (550)
T ss_dssp             HHHHHHHHTTCSCCEEEEECGGGSSEEEECC-----TTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTS
T ss_pred             HHHHHHHHcCCCccccccCcCccccceecCC-----CCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCc
Confidence            9999999995456999999999997776553     13456789999999999999998889999999999999999999


Q ss_pred             cccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCC
Q 039837          398 MQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEA  477 (544)
Q Consensus       398 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~  477 (544)
                      +.|||++|+.|...|+.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..
T Consensus       398 ~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~  477 (550)
T 3rix_A          398 MSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDA  477 (550)
T ss_dssp             CSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC------------------------------------------
T ss_pred             chhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCC
Confidence            99999999999999989999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCcee-EEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837          478 GEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHSGKIMRRILKDKMLEKM  542 (544)
Q Consensus       478 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~~~~~P~t~~GKi~r~~l~~~~~~~~  542 (544)
                      ++.+++++++.++...+.++++++++++++.++.|. .++++++||+|++||++|++|++++.++.
T Consensus       478 g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  543 (550)
T 3rix_A          478 GELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK  543 (550)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             CceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhc
Confidence            999999999888777788999999999999886654 68899999999999999999999997654

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=7.6e-80  Score=638.49  Aligned_cols=503  Identities=30%  Similarity=0.495  Sum_probs=395.5

Q ss_pred             CCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc
Q 039837           26 RHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSG------KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVA   99 (544)
Q Consensus        26 ~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~   99 (544)
                      ..|+.+.+ .+|+.++|.++|+++|+++|+++...+      +++||+||.++++++|++|++.|+++||+|+++++|++
T Consensus        10 ~~p~~~~~-~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~   88 (549)
T 3g7s_A           10 GFPSLYYP-KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSI   88 (549)
T ss_dssp             CCCCCCCC-CCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH
T ss_pred             CCCCCCcC-CCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH
Confidence            33444444 579999999999999999999987311      78999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhc----CCCcEEEecccccccccCHHHHHH
Q 039837          100 EYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKG----LGLPIIVLGEERIESAINWSELIE  175 (544)
Q Consensus       100 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  175 (544)
                      ++++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+..    .....+.+..   .....+.++..
T Consensus        89 ~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  165 (549)
T 3g7s_A           89 DYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVG---GEVNSLSEVMD  165 (549)
T ss_dssp             HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEET---CSSSCHHHHHH
T ss_pred             HHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeC---CCCcCHHHHHh
Confidence            9999999999999999999999999999999999999999999887665533    2233332221   12334555544


Q ss_pred             hhhhc------CC-CCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhh
Q 039837          176 AADKA------GN-NFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCAT  248 (544)
Q Consensus       176 ~~~~~------~~-~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~  248 (544)
                      .....      .. ...+.+.+||||||.||||++||+++.+.+......+  ++...++++..+|++|.+++.. ++.+
T Consensus       166 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~~~~~-~~~~  242 (549)
T 3g7s_A          166 SGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT--GLSHMDTIVGCMPMFHSAEFGL-VNLM  242 (549)
T ss_dssp             HSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH--CCCTTCEEECCSCTTSHHHHHH-HTTH
T ss_pred             cCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc--CCCCCCEEEEeCcHHHHHHHHH-HHHH
Confidence            32211      01 2334678999999999999999999999988887777  7889999999999999999854 8889


Q ss_pred             HhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCc--cCccccccccEEEecCCCCHhHHHHHHhh-
Q 039837          249 LRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDE--FDLSKLQLRAVMTAAAPLAPDLLSSFEKK-  325 (544)
Q Consensus       249 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~l~~~~v~~~G~~~~~~~~~~~~~~-  325 (544)
                      +..|+++++.+.+++..+++.++++++|+++++|+++..|++......  .++++++.  +++||+++++++.+++.+. 
T Consensus       243 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~--~~~gg~~l~~~~~~~~~~~~  320 (549)
T 3g7s_A          243 VTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKV--FATGAWPVAPALVEKLLKLA  320 (549)
T ss_dssp             HHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCE--EEEESSCCCHHHHHHHHHHH
T ss_pred             HhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeE--EEeCCccCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999987543322  56677777  9999999999999999987 


Q ss_pred             ---c--CCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEeccccccc
Q 039837          326 ---F--PGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQG  400 (544)
Q Consensus       326 ---~--~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~g  400 (544)
                         +  |++++++.||+||++.+++...    ........++|+|+++++++|+|++++++++.|+.|||+|+|++++.|
T Consensus       321 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~----~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~G  396 (549)
T 3g7s_A          321 AEKCNNPRLRHNQIWGMTEACPMVTTNP----PLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKG  396 (549)
T ss_dssp             HHHSSCTTCEEEEEEECGGGSSEEEECC----GGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSE
T ss_pred             HhhcCCccccccceEeccccchhhhcCC----ccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhh
Confidence               5  2389999999999998776543    112245678999999999999998899999999999999999999999


Q ss_pred             ccCChhhhhcccC--CCC--eeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCC
Q 039837          401 YYNNEEETARTID--KNG--WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEE  476 (544)
Q Consensus       401 y~~~~~~~~~~~~--~~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~  476 (544)
                      ||++|+.|.+.|.  .+|  ||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.
T Consensus       397 Y~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~  476 (549)
T 3g7s_A          397 YWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEE  476 (549)
T ss_dssp             ETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC--
T ss_pred             hCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccc
Confidence            9999999998873  566  999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCceeEEEEEeCCC--CCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          477 AGEIPAACVVMNPN--AKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       477 ~~~~~~~~v~~~~~--~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      .++.+++++++.++  ...+.++++++++++|+.|++|..++++++||+|++||++|++|++++.++
T Consensus       477 ~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  543 (549)
T 3g7s_A          477 AGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEG  543 (549)
T ss_dssp             ----CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC-------------------
T ss_pred             cCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcc
Confidence            89999999999877  567889999999999999999999999999999999999999999988654

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=2.5e-80  Score=640.14  Aligned_cols=492  Identities=24%  Similarity=0.364  Sum_probs=422.7

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      ..|+.++|.++|+++|+++|+++.  ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~  101 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL  101 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence            469999999999999999999986  689999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccchH--------HHhhc-C-CCc-EEEecccccccccCHHHHHHhh------
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPIY--------EKVKG-L-GLP-IIVLGEERIESAINWSELIEAA------  177 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~------  177 (544)
                      ++|+++.++.+++.++++.++++++|++++..        ..+.. . .+. ++..+...  .   +..+....      
T Consensus       102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~  176 (539)
T 1mdb_A          102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE--E---FLPLEDLHTEPVKL  176 (539)
T ss_dssp             EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT--T---SEEGGGCCCCCCCC
T ss_pred             EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc--c---hhhhhhcccccccc
Confidence            99999999999999999999999999987531        11211 1 122 22222110  0   00000000      


Q ss_pred             hhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHH-HHHhhHhccceEE
Q 039837          178 DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITG-ICCATLRNKGKVV  256 (544)
Q Consensus       178 ~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~  256 (544)
                      ........+.+.+||||||.||||++||+++.+.+......+  ++..++++++.+|++|.+++.. .++.++..|++++
T Consensus       177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v  254 (539)
T 1mdb_A          177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC--WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV  254 (539)
T ss_dssp             CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH--TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred             CCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh--CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence            011122334578999999999999999999999888777666  7788999999999999999855 6889999999999


Q ss_pred             EcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEeccc
Q 039837          257 MMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYG  336 (544)
Q Consensus       257 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  336 (544)
                      +.+.+++..+++.++++++|++.++|+++..|++.......+++++|.  +++||+++++++.++|.+.+ ++++++.||
T Consensus       255 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~--~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG  331 (539)
T 1mdb_A          255 LSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQV--LQVGGAKFSAEAARRVKAVF-GCTLQQVFG  331 (539)
T ss_dssp             ECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCE--EEEESSCCCHHHHTTHHHHT-CSEEEEEEE
T ss_pred             ECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeE--EEEcCCCCCHHHHHHHHHHh-CCcEEEEEc
Confidence            999899999999999999999999999999998765444556788777  99999999999999999988 899999999


Q ss_pred             CccccccccccCCCCCCCCCCCCCcccccCCCc-eEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCC
Q 039837          337 LTEHSCITLTYGDPANPSAGSKKNSVGFILPNL-EVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKN  415 (544)
Q Consensus       337 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~  415 (544)
                      +||++..+....    .......+++|+|+++. +++|+| +++++++.|+.|||+|+|++++.|||++|+.|...|..+
T Consensus       332 ~TE~~~~~~~~~----~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~  406 (539)
T 1mdb_A          332 MAEGLVNYTRLD----DPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTED  406 (539)
T ss_dssp             CTTSCEEECCTT----SCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTT
T ss_pred             CCCCcccccCCC----CcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCC
Confidence            999654332211    00112346899999764 799999 689999999999999999999999999999999999889


Q ss_pred             CeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 039837          416 GWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE  495 (544)
Q Consensus       416 ~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  495 (544)
                      |||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..|+.+++++++.. ...+.
T Consensus       407 g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~  485 (539)
T 1mdb_A          407 GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKA  485 (539)
T ss_dssp             SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCH
T ss_pred             CCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCH
Confidence            99999999999999999999999999999999999999999999999999999999998888889999998873 45678


Q ss_pred             HHHHHHHHhc-ccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhhhC
Q 039837          496 DDIMDFVASN-VATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK  544 (544)
Q Consensus       496 ~~l~~~l~~~-l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~~~  544 (544)
                      ++++++++++ |+.|++|..++++++||+|++||++|++|++++.++|++
T Consensus       486 ~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~  535 (539)
T 1mdb_A          486 AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLA  535 (539)
T ss_dssp             HHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhc
Confidence            9999999998 999999999999999999999999999999999998864

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=3.2e-80  Score=633.96  Aligned_cols=488  Identities=25%  Similarity=0.386  Sum_probs=423.5

Q ss_pred             HHHHhhhhhcCCceEEEE-ccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecC
Q 039837           40 DFVLQDAELYADKVAFVE-AVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGA  118 (544)
Q Consensus        40 ~~l~~~a~~~p~~~a~~~-~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l  118 (544)
                      ++|.+.|+++|++.++.. ..+++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|+
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl   83 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL   83 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred             hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence            467889999999998874 2236899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCceEEEeccchHHHhhc----CCCcEEEecccccccccCHHHHHHhhhh------cCCCCCCCC
Q 039837          119 NPTAHASELKKQVDAADAKLIVSYAPIYEKVKG----LGLPIIVLGEERIESAINWSELIEAADK------AGNNFSNDD  188 (544)
Q Consensus       119 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  188 (544)
                      ++.++.+++.+++++++++++|++.+..+.+..    ....+..++...   ...+.........      ......+.+
T Consensus        84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~a~i  160 (503)
T 4fuq_A           84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDG---RGSLTDAAAGASEAFATIDRGADDLAAI  160 (503)
T ss_dssp             CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTS---CSHHHHHHHTSCSCCCCCCCCTTSEEEE
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCc---ccccchhhhcCCCCcCcCCCCCCCeEEE
Confidence            999999999999999999999998765443322    122233332111   1111111111110      111223457


Q ss_pred             CCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHH
Q 039837          189 DVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLD  268 (544)
Q Consensus       189 ~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~  268 (544)
                      .+||||||.||||++||+++.+.+......+  ++.++++++..+|++|.+|+...++.++..|+++++.+.+++..+++
T Consensus       161 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~  238 (503)
T 4fuq_A          161 LYTSGTTGRSKGAMLSHDNLASNSLTLVDYW--RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILD  238 (503)
T ss_dssp             EECC--CCSCCEEEEEHHHHHHHHHHHHHHT--TCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHH
T ss_pred             EECCCcccCCeEEEEeHHHHHHHHHHHHHHh--CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHH
Confidence            8999999999999999999999988888777  78899999999999999987666778899999999999999999999


Q ss_pred             HHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccC
Q 039837          269 ALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYG  348 (544)
Q Consensus       269 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~  348 (544)
                      .++  ++|++.++|+++..|++........+++++.  +++||+++++++.++|.+.+ +++++|.||+||++..+... 
T Consensus       239 ~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~-  312 (503)
T 4fuq_A          239 LMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRL--FISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNP-  312 (503)
T ss_dssp             HHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCE--EEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCCC-
T ss_pred             HHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEE--EEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccccC-
Confidence            998  8999999999999999987766667778777  99999999999999999998 88999999999998764322 


Q ss_pred             CCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcC
Q 039837          349 DPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDD  428 (544)
Q Consensus       349 ~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~  428 (544)
                          .......+++|+|+++++++|+|++++++++.|+.|||+|+|++++.|||++|+.|...|..+|||+|||+|++++
T Consensus       313 ----~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~  388 (503)
T 4fuq_A          313 ----YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE  388 (503)
T ss_dssp             ----SSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT
T ss_pred             ----CCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC
Confidence                1234556789999999999999988999999999999999999999999999999999998899999999999999


Q ss_pred             CCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccC
Q 039837          429 DGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVAT  508 (544)
Q Consensus       429 ~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~  508 (544)
                      ||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++++++..++.++++++..++...+.++++++++++|+.
T Consensus       389 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~  468 (503)
T 4fuq_A          389 RGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAK  468 (503)
T ss_dssp             TCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCG
T ss_pred             CCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999999999889999999999888888999999999999999


Q ss_pred             CCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837          509 YKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM  542 (544)
Q Consensus       509 ~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~  542 (544)
                      |++|..++++++||+|++||++|++|+++|++..
T Consensus       469 ~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~  502 (503)
T 4fuq_A          469 FKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDIY  502 (503)
T ss_dssp             GGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTTT
T ss_pred             CCCCCEEEEECCCCCCcccceeHHHHHHHHHHhh
Confidence            9999999999999999999999999999986543

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=2.1e-80  Score=637.44  Aligned_cols=501  Identities=25%  Similarity=0.380  Sum_probs=425.5

Q ss_pred             cCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHH
Q 039837           25 SRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIV  104 (544)
Q Consensus        25 ~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~  104 (544)
                      ++......+...|+.++|.++|+++|+++|+++...++++||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus         5 ~~~~~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~   84 (517)
T 3r44_A            5 HHHHVDDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL   84 (517)
T ss_dssp             -------CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred             ccccCCCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence            34445566778899999999999999999999874445999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC------CcEEEecccccccccCHHHHHHhhh
Q 039837          105 ALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG------LPIIVLGEERIESAINWSELIEAAD  178 (544)
Q Consensus       105 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  178 (544)
                      +|||+++|++++|+++.++.+++.+++++++++++|++......+....      ..++....     ...+........
T Consensus        85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  159 (517)
T 3r44_A           85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG-----ADSLAERLRSAA  159 (517)
T ss_dssp             HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE-----HHHHHHHHHHCC
T ss_pred             HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC-----cccHHHHhhccC
Confidence            9999999999999999999999999999999999999987765543321      01111110     011222222111


Q ss_pred             hc------CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhcc
Q 039837          179 KA------GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNK  252 (544)
Q Consensus       179 ~~------~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G  252 (544)
                      ..      .......+.+||||||.||||++||+++.+.+......+  ++..+++++..+|++|.+++...++..+ .|
T Consensus       160 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G  236 (517)
T 3r44_A          160 ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI--DVRYRDRLLLPLPMFHVAALTTVIFSAM-RG  236 (517)
T ss_dssp             CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS--CCCTTCEEEECSCTTSHHHHHHHHHHHH-HT
T ss_pred             cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc--CCCCCCEEEEeCchHHHHHHHHHHHHHh-cC
Confidence            11      112233578999999999999999999999998888777  7889999999999999999855555555 99


Q ss_pred             ceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEE
Q 039837          253 GKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQ  332 (544)
Q Consensus       253 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~  332 (544)
                      +++++.+.+++..+++.++++++|++.++|+++..|.+.......+++++|.  +++||+++++++.++|.+.  +++++
T Consensus       237 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--i~~gGe~l~~~~~~~~~~~--~~~~~  312 (517)
T 3r44_A          237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRY--FITGGAPMPEALIKIYAAK--NIEVV  312 (517)
T ss_dssp             CEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCE--EEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred             eEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccE--EEECCCCCCHHHHHHHHhc--CCcEE
Confidence            9999999999999999999999999999999999998876555566777777  9999999999999999986  89999


Q ss_pred             ecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhccc
Q 039837          333 EAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI  412 (544)
Q Consensus       333 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~  412 (544)
                      +.||+||++..++....   .......+++|+|+++++++++| +++.+++.| .|||+|+|++++.|||++|+.|.+.|
T Consensus       313 ~~YG~TE~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f  387 (517)
T 3r44_A          313 QGYALTESCGGGTLLLS---EDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF  387 (517)
T ss_dssp             EEEECGGGTTCEEEECG---GGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE
T ss_pred             EeecccccccceeecCC---ccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh
Confidence            99999999876654431   11245667899999999999999 688888888 89999999999999999999999999


Q ss_pred             CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCC
Q 039837          413 DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK  492 (544)
Q Consensus       413 ~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  492 (544)
                       .+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++ ..++..
T Consensus       388 -~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~  465 (517)
T 3r44_A          388 -DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNE  465 (517)
T ss_dssp             -ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTT
T ss_pred             -cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCC
Confidence             789999999999999999999999999999999999999999999999999999999999888888888887 556667


Q ss_pred             CCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhhhC
Q 039837          493 ESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK  544 (544)
Q Consensus       493 ~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~~~  544 (544)
                      .+.++++++++++|+.|++|..++++++||+|++||++|++|+++|.+++.+
T Consensus       466 ~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~k  517 (517)
T 3r44_A          466 VSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVPK  517 (517)
T ss_dssp             CCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCCC
T ss_pred             CCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhccC
Confidence            8889999999999999999999999999999999999999999999888754

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=8.6e-79  Score=632.32  Aligned_cols=497  Identities=24%  Similarity=0.359  Sum_probs=407.5

Q ss_pred             CCCCCCHH-HHHHhhhhhcCCceEEEEcc---CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHH
Q 039837           32 VPENVTLP-DFVLQDAELYADKVAFVEAV---SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALG  107 (544)
Q Consensus        32 ~~~~~~l~-~~l~~~a~~~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA  107 (544)
                      .+...|+. ++|+++|+++|+++|+++.+   .++++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        51 ~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA  130 (580)
T 3etc_A           51 VPENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLG  130 (580)
T ss_dssp             CCSSCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHH
T ss_pred             CcccchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            34556776 99999999999999998632   236899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchH--HHhhc-------CCCcEEEecccccccccCHHHHHHhhh
Q 039837          108 IMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIY--EKVKG-------LGLPIIVLGEERIESAINWSELIEAAD  178 (544)
Q Consensus       108 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (544)
                      |+++|++++|+++.++.+++.+++++++++++|++.+..  ..+..       .....+.++.........+.+......
T Consensus       131 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (580)
T 3etc_A          131 LHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESS  210 (580)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSC
T ss_pred             HHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCC
Confidence            999999999999999999999999999999999987643  33221       113344444333444455555554322


Q ss_pred             hc----------CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhh
Q 039837          179 KA----------GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCAT  248 (544)
Q Consensus       179 ~~----------~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~  248 (544)
                      ..          .......+.+||||||.||||.++|.++...+.......  ++...++++...|++|..+++..++.+
T Consensus       211 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (580)
T 3etc_A          211 PIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ--NVEDDGLHYTVADSGWGKCVWGKLYGQ  288 (580)
T ss_dssp             SCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS--CCCTTCEEEECCCTTSTHHHHHTTHHH
T ss_pred             cccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh--CCCCCceEEEeCChHHHHHHHHHHHHH
Confidence            11          112233567899999999999999999888776655555  778899999999999988886678889


Q ss_pred             HhccceEEEc--CccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhc
Q 039837          249 LRNKGKVVMM--NRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKF  326 (544)
Q Consensus       249 l~~G~~~~~~--~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~  326 (544)
                      +..|+++++.  ..+++..+++.++++++|+++++|+++..|++.. ....+++++|.  +++||+++++++.++|.+.+
T Consensus       289 l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~--i~~gGe~l~~~~~~~~~~~~  365 (580)
T 3etc_A          289 WIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKY--AVVAGEPLNPEVFNRFLEFT  365 (580)
T ss_dssp             HHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCE--EEECSSCCCHHHHHHHHHHH
T ss_pred             HhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceE--EEEccCCCCHHHHHHHHHHh
Confidence            9999999987  5689999999999999999999999999998863 34556778777  99999999999999999988


Q ss_pred             CCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEec-----ccccccc
Q 039837          327 PGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRS-----QCVMQGY  401 (544)
Q Consensus       327 ~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~-----~~~~~gy  401 (544)
                       ++++++.||+||++..++...     ......+++|+|+++++++|+| ++|++++.|+.|||+|+|     +.++.||
T Consensus       366 -g~~i~~~YG~TE~~~~~~~~~-----~~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY  438 (580)
T 3etc_A          366 -GIKLMEGFGQTETVVTIATFP-----WMEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHY  438 (580)
T ss_dssp             -SCCCEEEECCTTSSCCEECCT-----TSCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEE
T ss_pred             -CCeEecccccccccceeecCC-----CCCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccc
Confidence             899999999999987665442     1345678999999999999999 579999999999999997     7899999


Q ss_pred             cCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCcee
Q 039837          402 YNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIP  481 (544)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~  481 (544)
                      |++|+.|.+.| .+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..|+.+
T Consensus       439 ~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~  517 (580)
T 3etc_A          439 GKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVI  517 (580)
T ss_dssp             TTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred             cCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEE
Confidence            99999999999 68999999999999999999999999999999999999999999999999999999999999899999


Q ss_pred             EEEEEeCCCCCCCH---HHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          482 AACVVMNPNAKESE---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       482 ~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ++++++.++...+.   ++|+++++++|+.|++|..++++++||+|++|||+|++|++++++|
T Consensus       518 ~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~q  580 (580)
T 3etc_A          518 KATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQSQ  580 (580)
T ss_dssp             EEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC---------------------
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhcC
Confidence            99999988765443   6899999999999999999999999999999999999999998764

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=2.7e-78  Score=620.68  Aligned_cols=488  Identities=23%  Similarity=0.320  Sum_probs=414.6

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF  115 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  115 (544)
                      +|+.++|.++|+++|+++|+.+...++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   81 (504)
T 1t5h_X            2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP   81 (504)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence            58999999999999999999986446899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHhcCceEEEe--ccchHHHh-hcC-CCcEEEecccccccc-cCHHHHHHhhhhcCCCCCCCCCC
Q 039837          116 SGANPTAHASELKKQVDAADAKLIVS--YAPIYEKV-KGL-GLPIIVLGEERIESA-INWSELIEAADKAGNNFSNDDDV  190 (544)
Q Consensus       116 v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~-~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  190 (544)
                      +|+++.++.+++.+++++++++++++  +.+..+.+ ... ..+++..++...... ....... ..........+.+.+
T Consensus        82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~  160 (504)
T 1t5h_X           82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPI-EDPQREPAQPAFIFY  160 (504)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEEGGGTEETTEECCCSCCC-CCCCCCTTSEEEEEE
T ss_pred             EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEEecchhhcCcccccCCcc-CCCCCCCCCeEEEEe
Confidence            99999999999999999999999999  76655544 222 122222211100000 0000000 000111223346789


Q ss_pred             CCCCCcCcceeeccHHHHHHHHHhhccccCCcc--cCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHH
Q 039837          191 KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEM--IGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLD  268 (544)
Q Consensus       191 tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~  268 (544)
                      ||||||.||||++||+++.+.+.+....+  ++  ...+++++.+|++|.+|+...++.++..|+++++.+.+++..+++
T Consensus       161 TSGTTG~PKgV~~sh~~~~~~~~~~~~~~--~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~  238 (504)
T 1t5h_X          161 TSGTTGLPKAAIIPQRAAESRVLFMSTQV--GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQ  238 (504)
T ss_dssp             CCC---CCCEEEEEGGGHHHHHHHHHHTT--CCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHH
T ss_pred             CCCCCCCCCEEEecHHHHHHHHHHHHHhh--CCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHH
Confidence            99999999999999999999888776666  55  788999999999999998667889999999999999999999999


Q ss_pred             HHHHcCceeeecchHHHHHHhcCCC--CCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccc
Q 039837          269 ALITHEVTFAPIVPPIILSLVKDPI--VDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLT  346 (544)
Q Consensus       269 ~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~  346 (544)
                      .++++++|++.++|+++..|++...  ....+++++|.  +++||+++++++.++|.+.+ ++.+++.||+||++... .
T Consensus       239 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~--~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~-~  314 (504)
T 1t5h_X          239 LVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH--VTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSL-Y  314 (504)
T ss_dssp             HHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCE--EEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTTEEEE-E
T ss_pred             HHHHhCCeEEEeChHHHHHHHhhhccccccccCccccE--EEEcCCcCCHHHHHHHHHhc-Ccceeeeeccccccccc-c
Confidence            9999999999999999999987542  23445677777  99999999999999999999 78999999999994322 2


Q ss_pred             cCCCCCCCCCCCCCcccccCCCceEEEEeCCCC---CcCCCCCCceEEEe-cccccccccCChhhhhcccCCCCeeecCc
Q 039837          347 YGDPANPSAGSKKNSVGFILPNLEVKFINPETG---KSLPSNTPGELCVR-SQCVMQGYYNNEEETARTIDKNGWLHTGD  422 (544)
Q Consensus       347 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~---~~~~~g~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~~~~~~TGD  422 (544)
                      .       .....+++|.|.++++++++|. ++   ++++.|+.|||+++ |+.++.||+++|+.|.+.| .+|||+|||
T Consensus       315 ~-------~~~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGD  385 (504)
T 1t5h_X          315 M-------RQPKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSD  385 (504)
T ss_dssp             E-------ESCSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEE
T ss_pred             c-------cCCCCCccccCCCCCceeEEec-cCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCc
Confidence            1       1234578999999999999994 55   89999999999999 9999999999999999999 789999999


Q ss_pred             eEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH
Q 039837          423 IGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV  502 (544)
Q Consensus       423 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l  502 (544)
                      +|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..|+.+++++++.++...+.+++.+++
T Consensus       386 lg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~  465 (504)
T 1t5h_X          386 VAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFC  465 (504)
T ss_dssp             EEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred             EEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998889999999999887777889999999


Q ss_pred             Hh-cccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          503 AS-NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       503 ~~-~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      ++ +|+.|++|..++++++||+|++||++|++|+++|+
T Consensus       466 ~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          466 RSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             HTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred             hhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence            98 99999999999999999999999999999999874

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=2.1e-79  Score=675.88  Aligned_cols=521  Identities=37%  Similarity=0.650  Sum_probs=355.1

Q ss_pred             ceeeecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc
Q 039837           20 EHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVA   99 (544)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~   99 (544)
                      +.++.+..++.+.+..+|+.++|.++++++|+++|+++...++++||+||.++++++|++|++.|+++||+|+++++|++
T Consensus        45 ~~~~~~~~~~~~~p~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~  124 (979)
T 3tsy_A           45 DVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCP  124 (979)
T ss_dssp             CCCBCCSSCCCCCCTTSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCH
T ss_pred             CceeecCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCH
Confidence            33466777888888889999999999999999999998766789999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhc----CCCcEEEecccc----cccccCHH
Q 039837          100 EYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKG----LGLPIIVLGEER----IESAINWS  171 (544)
Q Consensus       100 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~  171 (544)
                      ++++++|||+++|++++|++|.++.+++.+++++++++++|++.+..+.+..    ....++.++...    ......+.
T Consensus       125 e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (979)
T 3tsy_A          125 EFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFT  204 (979)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEGG
T ss_pred             HHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccHH
Confidence            9999999999999999999999999999999999999999999876544332    233444443211    01111122


Q ss_pred             HHHHhh---------hhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccC--CcccCccEEEEecchhHHHH
Q 039837          172 ELIEAA---------DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV--PEMIGQVTTLGLIPFFHIYG  240 (544)
Q Consensus       172 ~~~~~~---------~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~g  240 (544)
                      ++....         ..........+.|||||||.||||++||+++.+.+........  ..+.+.+++++.+|++|.++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~  284 (979)
T 3tsy_A          205 ELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYA  284 (979)
T ss_dssp             GTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHH
T ss_pred             HHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHH
Confidence            211100         0112233446789999999999999999999988776544221  25778999999999999999


Q ss_pred             HHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHH
Q 039837          241 ITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLS  320 (544)
Q Consensus       241 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~  320 (544)
                      +...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......+++++|.  +++||+++++++.+
T Consensus       285 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~--~~~gg~~l~~~~~~  362 (979)
T 3tsy_A          285 LNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRV--VKSGAAPLGKELED  362 (979)
T ss_dssp             HHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCE--EEESSCCCCSSHHH
T ss_pred             HHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEE--EEEcCCCCCHHHHH
Confidence            8777889999999999999999999999999999999999999999999887666677888888  99999999999999


Q ss_pred             HHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEeccccccc
Q 039837          321 SFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQG  400 (544)
Q Consensus       321 ~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~g  400 (544)
                      +|.+.||+++++|.||+||++.+++..............+++|+|+++++++|+|++++++++.|+.|||+|+|+.++.|
T Consensus       363 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~G  442 (979)
T 3tsy_A          363 AVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKG  442 (979)
T ss_dssp             HHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSE
T ss_pred             HHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCcccc
Confidence            99999999999999999999976654321111223456788999999999999998889999999999999999999999


Q ss_pred             ccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCce
Q 039837          401 YYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEI  480 (544)
Q Consensus       401 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~  480 (544)
                      ||++|+.|.+.|+.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++++++..++.
T Consensus       443 Y~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~  522 (979)
T 3tsy_A          443 YLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEV  522 (979)
T ss_dssp             ETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC----------------------------------------
T ss_pred             ccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888899


Q ss_pred             eEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837          481 PAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM  542 (544)
Q Consensus       481 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~  542 (544)
                      ++++++..++...+.++++++++++|+.|++|..++++++||+|++||++|++|++++.+.+
T Consensus       523 ~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  584 (979)
T 3tsy_A          523 PVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL  584 (979)
T ss_dssp             --------------------------------------------------------------
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence            99999988777778889999999999999999999999999999999999999999998765

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=4.8e-79  Score=627.81  Aligned_cols=487  Identities=20%  Similarity=0.241  Sum_probs=417.0

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF  115 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  115 (544)
                      |||.+.|.++|+++|+++|+++.  ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~   78 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWR--DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAY   78 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCE
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC--CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            68999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhh--------hcCCCCCCC
Q 039837          116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAAD--------KAGNNFSND  187 (544)
Q Consensus       116 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  187 (544)
                      +|+++.++.+++.++++.+++++++++......  ......+..+        .+........        .........
T Consensus        79 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~a~  148 (512)
T 3fce_A           79 IPVDLSIPADRVQRIAENSGAKLLLSATAVTVT--DLPVRIVSED--------NLKDIFFTHKGNTPNPEHAVKGDENFY  148 (512)
T ss_dssp             EEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS--CCSSEEEETH--------HHHHHHHHTTTCCCCGGGSCCTTSEEE
T ss_pred             EeeCCCCcHHHHHHHHHhcCCCEEEecCccccc--ccccceechh--------hhhhhcccccccCCCccccCCCCCeEE
Confidence            999999999999999999999999987543211  1111111110        1111111100        111223345


Q ss_pred             CCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc---cCHH
Q 039837          188 DDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR---FELR  264 (544)
Q Consensus       188 ~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~  264 (544)
                      +.+||||||.||||++||+++.+.+.+....+  ++..+++++..+|++|.+++ ..++.++..|+++++.+.   .++.
T Consensus       149 i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~  225 (512)
T 3fce_A          149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF--NLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDMIARPK  225 (512)
T ss_dssp             EEEECC----CEEEEEEHHHHHHHHHHHHHHT--TCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCHHHHHSHH
T ss_pred             EEECCCCCCCCceEEEehHHHHHHHHHHHHhc--CCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCHHHhhCHH
Confidence            78999999999999999999999998887777  78899999999999999997 568899999999999886   6899


Q ss_pred             HHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccc
Q 039837          265 AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCIT  344 (544)
Q Consensus       265 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~  344 (544)
                      .+++.++++++|++.++|+++..++.........+++++.  +++||+++++++.++|.+.|+++++++.||+||++..+
T Consensus       226 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~  303 (512)
T 3fce_A          226 DLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKT--FLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAV  303 (512)
T ss_dssp             HHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCE--EEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCS
T ss_pred             HHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccE--EEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhhe
Confidence            9999999999999999999999999887766677888777  99999999999999999999999999999999998776


Q ss_pred             cccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhccc---CCCCeeecC
Q 039837          345 LTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI---DKNGWLHTG  421 (544)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~~~~~TG  421 (544)
                      +...............++|+|+++++++|+| ++|.+++.|+.|||+++||+++.|||++|+.|.+.|   ++++||+||
T Consensus       304 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG  382 (512)
T 3fce_A          304 TGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTG  382 (512)
T ss_dssp             EEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE
T ss_pred             eeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCC
Confidence            5432111100123557899999999999999 789999999999999999999999999999999887   457899999


Q ss_pred             ceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH----HH
Q 039837          422 DIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE----DD  497 (544)
Q Consensus       422 D~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~----~~  497 (544)
                      |+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.++...++.+++++++.++.....    ++
T Consensus       383 Dlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~  461 (512)
T 3fce_A          383 DAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSA  461 (512)
T ss_dssp             EEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHH
T ss_pred             ceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHH
Confidence            99999 89999999999999999999999999999999999999999999998888888999999876654443    57


Q ss_pred             HHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          498 IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       498 l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ++++++++|+.|++|..++++++||+|++||++|++|+++++++
T Consensus       462 l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~  505 (512)
T 3fce_A          462 IKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTAL  505 (512)
T ss_dssp             HHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-
T ss_pred             HHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhc
Confidence            88999999999999999999999999999999999999998754

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=3.9e-78  Score=620.50  Aligned_cols=486  Identities=20%  Similarity=0.269  Sum_probs=419.6

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSL-GLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      ||+.+.|.++|+++|+++|+++.  ++++||+||.++++++|.+|++. |.++||+|+++++|++++++++|||+++|++
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~   78 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHP   78 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCC
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCE
Confidence            58999999999999999999986  78999999999999999999875 8889999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhh-------hhcCCCCCCC
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAA-------DKAGNNFSND  187 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  187 (544)
                      ++|+++.++.+++.++++.++++++|++..............+.           +.++....       ..........
T Consensus        79 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~a~  147 (511)
T 3e7w_A           79 YIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVS-----------AEELLENEGGSVSQDQWVKEHETFY  147 (511)
T ss_dssp             EEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEEE-----------HHHHHTSCSCCCCGGGSCCTTSEEE
T ss_pred             EEecCCCChHHHHHHHHHhCCCCEEEecccccchhcccccceec-----------HhhhhccccCCccccccCCCCCeEE
Confidence            99999999999999999999999999965532211111122221           11211110       0112223346


Q ss_pred             CCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc---cCHH
Q 039837          188 DDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR---FELR  264 (544)
Q Consensus       188 ~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~  264 (544)
                      +.+||||||.||||++||+++.+.+.+....+  ++..+++++..+|++|.+++ ..++.++..|+++++.+.   .++.
T Consensus       148 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~  224 (511)
T 3e7w_A          148 IIYTSGSTGNPKGVQISAANLQSFTDWICADF--PVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDAVNKPK  224 (511)
T ss_dssp             EEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS--TTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEECCHHHHHSHH
T ss_pred             EEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc--CCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEcChhhhcCHH
Confidence            78999999999999999999999998887777  78899999999999999987 568899999999999876   6899


Q ss_pred             HHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccc
Q 039837          265 AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCIT  344 (544)
Q Consensus       265 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~  344 (544)
                      .+++.++++++|++.++|+++..+++........+++++.  +++||+++++++.+++.+.||++++++.||+||++..+
T Consensus       225 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~--~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~  302 (511)
T 3e7w_A          225 VLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADT--FMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAV  302 (511)
T ss_dssp             HHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCE--EEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCS
T ss_pred             HHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccE--EEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeee
Confidence            9999999999999999999999999887666667788777  99999999999999999999999999999999998766


Q ss_pred             cccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccC---CCCeeecC
Q 039837          345 LTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTID---KNGWLHTG  421 (544)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~~~~~~TG  421 (544)
                      +...............++|+|+++++++|+| ++|++++.|+.|||+|+|++++.|||++|+.|.+.|.   +..||+||
T Consensus       303 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TG  381 (511)
T 3e7w_A          303 TSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTG  381 (511)
T ss_dssp             EEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEE
T ss_pred             eEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCC
Confidence            5432111111234556799999999999999 6799999999999999999999999999999998872   22379999


Q ss_pred             ceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH----HH
Q 039837          422 DIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE----DD  497 (544)
Q Consensus       422 D~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~----~~  497 (544)
                      |+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++.++.....    ++
T Consensus       382 Dlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~  460 (511)
T 3e7w_A          382 DAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSA  460 (511)
T ss_dssp             EEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHH
T ss_pred             CeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHH
Confidence            99999 69999999999999999999999999999999999999999999998888899999999887655443    67


Q ss_pred             HHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          498 IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       498 l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ++++++++|+.|++|..++++++||+|++||++|++|++++.++
T Consensus       461 l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~  504 (511)
T 3e7w_A          461 IKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVR  504 (511)
T ss_dssp             HHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHH
T ss_pred             HHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhh
Confidence            88899999999999999999999999999999999999998754

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=7.4e-78  Score=623.59  Aligned_cols=511  Identities=18%  Similarity=0.251  Sum_probs=418.6

Q ss_pred             CCCCcceeeccccccCCcceee-ecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHH
Q 039837            2 AMPNSFSVPVPLAAAHDEEHIF-RSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKAL   80 (544)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L   80 (544)
                      ++++..+..+.+..+++..+.. .++....+.+...|+.++|.++|+++|+++|+++.  ++++||+||.++++++|++|
T Consensus         4 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L   81 (563)
T 1amu_A            4 SSKSILIHAQNKNGTHEEEQYLFAVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIF   81 (563)
T ss_dssp             -------------CCCHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHH
T ss_pred             cCCCccccccccCCHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHCCCCeEEEeC--CceecHHHHHHHHHHHHHHH
Confidence            3567778888888888777664 35556666677789999999999999999999986  78999999999999999999


Q ss_pred             HHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC--CcEEE
Q 039837           81 RSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG--LPIIV  158 (544)
Q Consensus        81 ~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~  158 (544)
                      ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+....  ..+..
T Consensus        82 ~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~  161 (563)
T 1amu_A           82 IEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEI  161 (563)
T ss_dssp             HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEE
T ss_pred             HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceee
Confidence            9999999999999999999999999999999999999999999999999999999999999987766554432  12222


Q ss_pred             ecccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHH
Q 039837          159 LGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHI  238 (544)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  238 (544)
                      ++......... .   ...........+.+.+||||||.||||++||+++.+.+.+....+  ++..+++++..+|++|.
T Consensus       162 ~~~~~~~~~~~-~---~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~  235 (563)
T 1amu_A          162 FEEDTIKIREG-T---NLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL--NVTEKDRIGQFASISFD  235 (563)
T ss_dssp             CCCSTTTTSCC-S---CCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS--CCCTTCEEEECSCTTST
T ss_pred             ecchhhccccC-c---cCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc--CCCCCCEEEEeCCccHH
Confidence            22111000000 0   000011122334678999999999999999999999888777766  78899999999999999


Q ss_pred             HHHHHHHHhhHhccceEEEcCc---cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCC
Q 039837          239 YGITGICCATLRNKGKVVMMNR---FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLA  315 (544)
Q Consensus       239 ~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~  315 (544)
                      .++ ..++.++..|+++++.+.   .++..+++.++++++|++.++|+++..|...      .+++++.  +++||++++
T Consensus       236 ~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~--~~~gG~~l~  306 (563)
T 1amu_A          236 ASV-WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQT--LITAGSATS  306 (563)
T ss_dssp             HHH-HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSE--EEEESSCCC
T ss_pred             HHH-HHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccE--EEEEEecCC
Confidence            887 567889999999999875   5889999999999999999999999887542      3456666  999999999


Q ss_pred             HhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecc
Q 039837          316 PDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQ  395 (544)
Q Consensus       316 ~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~  395 (544)
                      +++.++|.+   .+++++.||+||++.+++.......  ......++|+|+++++++|+| +++++++.|+.|||+|+|+
T Consensus       307 ~~~~~~~~~---~~~~~~~YG~TE~~~~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~  380 (563)
T 1amu_A          307 PSLVNKWKE---KVTYINAYGPTETTICATTWVATKE--TIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGE  380 (563)
T ss_dssp             HHHHHHHTT---TSEEEEEECCGGGSSCSEEEECCSS--CCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEET
T ss_pred             HHHHHHHHh---CCeEEEEECcCHHhHhheeeecccc--cCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEech
Confidence            999999987   4789999999999876654321111  223557899999999999999 6899999999999999999


Q ss_pred             cccccccCChhhhhcccC------CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEE
Q 039837          396 CVMQGYYNNEEETARTID------KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV  469 (544)
Q Consensus       396 ~~~~gy~~~~~~~~~~~~------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  469 (544)
                      +++.|||++|+.|.+.|.      +++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|
T Consensus       381 ~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~V  460 (563)
T 1amu_A          381 GLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAV  460 (563)
T ss_dssp             TCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEE
T ss_pred             hhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEE
Confidence            999999999999998873      24699999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 039837          470 VSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK  537 (544)
Q Consensus       470 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~  537 (544)
                      ++.++...++.++++++...  ..+.++++++++++|+.|++|..++++++||+|++||++|++|++.
T Consensus       461 v~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~  526 (563)
T 1amu_A          461 SVHKDHQEQPYLCAYFVSEK--HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEP  526 (563)
T ss_dssp             EEEECTTSCEEEEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCC
T ss_pred             EEeecCCCCeEEEEEEEeCC--CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCc
Confidence            99998888888999998753  4678899999999999999999999999999999999999999864

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=6.3e-79  Score=630.00  Aligned_cols=501  Identities=24%  Similarity=0.385  Sum_probs=382.3

Q ss_pred             CCCCHHHHHHhhhhhcCCceEEEEc--cCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHh
Q 039837           34 ENVTLPDFVLQDAELYADKVAFVEA--VSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAA  111 (544)
Q Consensus        34 ~~~~l~~~l~~~a~~~p~~~a~~~~--~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~  111 (544)
                      ...|+.+.|.++|+++|+++|+++.  ..++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus        16 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~   95 (541)
T 1v25_A           16 EELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM   95 (541)
T ss_dssp             CCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence            3468999999999999999999852  12578999999999999999999999999999999999999999999999999


Q ss_pred             cCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-----CCc-EEEecccccccccCHHHHHHhhh---hcCC
Q 039837          112 GGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-----GLP-IIVLGEERIESAINWSELIEAAD---KAGN  182 (544)
Q Consensus       112 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~  182 (544)
                      |++++|+++.++.+++.+++++++++++|++++....+...     ... ++.++.........++++.....   ....
T Consensus        96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (541)
T 1v25_A           96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPE  175 (541)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCCCCCCCT
T ss_pred             CcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccCCcccCCC
Confidence            99999999999999999999999999999998876554332     122 33333221112223433322111   0111


Q ss_pred             CCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhc--cccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc
Q 039837          183 NFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTL--FSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR  260 (544)
Q Consensus       183 ~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  260 (544)
                      .....+.+||||||.||||++||+++.+......  ..+  ++...+++++.+|++|.+++ ..++.++..|+++++.+.
T Consensus       176 ~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~~v~~~~  252 (541)
T 1v25_A          176 RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT--ALSEKDVVLPVVPMFHVNAW-CLPYAATLVGAKQVLPGP  252 (541)
T ss_dssp             TSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT--CCCTTCEEEECSCTTSHHHH-THHHHHHHHTCEEEECTT
T ss_pred             CCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc--cCCCCCEEEEeccchhhhHH-HHHHHHHhcCceEEeeCC
Confidence            2233568999999999999999999987766532  333  67889999999999999987 456788999999999874


Q ss_pred             -cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcc
Q 039837          261 -FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE  339 (544)
Q Consensus       261 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE  339 (544)
                       +++..+++.++++++|++.++|+++..|++.......++++++.  +++||+++++++.++| +.+ ++++++.||+||
T Consensus       253 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~--i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE  328 (541)
T 1v25_A          253 RLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRR--LVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTE  328 (541)
T ss_dssp             CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCE--EEECSSCCCHHHHHHH-HHT-TCEEEEEEECGG
T ss_pred             CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccE--EEECCCCCCHHHHHHH-HHh-CCceeecccccc
Confidence             69999999999999999999999999998754433445677777  9999999999999999 666 899999999999


Q ss_pred             ccccccccCCCCCCCC------CCCCCcccccCCCceEEEEeCCCCCcCCC--CCCceEEEecccccccccCChhhhhcc
Q 039837          340 HSCITLTYGDPANPSA------GSKKNSVGFILPNLEVKFINPETGKSLPS--NTPGELCVRSQCVMQGYYNNEEETART  411 (544)
Q Consensus       340 ~~~~~~~~~~~~~~~~------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~  411 (544)
                      ++.+++..........      ....+++|+|+++++++|+| +++++++.  ++.|||+|+||+++.|||++|+.|.+.
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~  407 (541)
T 1v25_A          329 TSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSA  407 (541)
T ss_dssp             GSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTT
T ss_pred             cccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhh
Confidence            9877665431100000      01346899999999999999 57888884  368999999999999999999999999


Q ss_pred             cCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCC
Q 039837          412 IDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA  491 (544)
Q Consensus       412 ~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  491 (544)
                      |..+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.+++++++. +.
T Consensus       408 f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~  486 (541)
T 1v25_A          408 LTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GE  486 (541)
T ss_dssp             BCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC------
T ss_pred             ccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CC
Confidence            98799999999999999999999999999999999999999999999999999999999999988889999998876 44


Q ss_pred             CCCHHHHHHHHHh-cccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhhh
Q 039837          492 KESEDDIMDFVAS-NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR  543 (544)
Q Consensus       492 ~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~~  543 (544)
                      ..+.+++.+++++ +|+.|++|..++++++||+|++||++|++|+++|.++++
T Consensus       487 ~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~  539 (541)
T 1v25_A          487 KPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYG  539 (541)
T ss_dssp             --------------CCCTTTSCSBC--------------CCTTHHHHSTTSSC
T ss_pred             CCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhC
Confidence            4567889999999 899999999999999999999999999999999987765

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=3e-79  Score=632.88  Aligned_cols=494  Identities=21%  Similarity=0.307  Sum_probs=331.4

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG  112 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G  112 (544)
                      ..+.|+.++|.++|+++|+++|+++.  ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus        27 ~~~~tl~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G  104 (544)
T 3o83_A           27 WIDQPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAG  104 (544)
T ss_dssp             CCCCCTTHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHhCCCceEEEcC--CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence            34578999999999999999999987  7899999999999999999999999999999999999999999999999999


Q ss_pred             CeeecCCCCCCHHHHHHHHHhcCceEEEeccchH--------HHhhcC--CCcEE-EecccccccccCHHHHHHhhhh--
Q 039837          113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIY--------EKVKGL--GLPII-VLGEERIESAINWSELIEAADK--  179 (544)
Q Consensus       113 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~--  179 (544)
                      ++++|+++.++.+++.+++++++++++|++....        ..+...  ....+ ..+...  ....+.+.......  
T Consensus       105 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  182 (544)
T 3o83_A          105 VVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQA--TDFGLLDWIETPAETF  182 (544)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCT--TSEEHHHHHHSCCSSC
T ss_pred             cEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCc--cccchhhhhhcccccc
Confidence            9999999999999999999999999999987542        222211  12222 222111  11123333222111  


Q ss_pred             -----cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHH-HHHhhHhccc
Q 039837          180 -----AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITG-ICCATLRNKG  253 (544)
Q Consensus       180 -----~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~  253 (544)
                           ......+.+.+||||||.||||++||+++.+.+......+  ++.+++++++.+|++|.+++.. .++.++..|+
T Consensus       183 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~--~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~  260 (544)
T 3o83_A          183 VDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC--GLNSNTRLLCALPAPHNFMLSSPGALGVLHAGG  260 (544)
T ss_dssp             CCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT--TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTC
T ss_pred             cccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh--CCCCCCeEEEecCcceEeecchHHHHHHHHcCC
Confidence                 1112234567899999999999999999999998888777  7889999999999999998854 5788999999


Q ss_pred             eEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEe
Q 039837          254 KVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQE  333 (544)
Q Consensus       254 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~  333 (544)
                      ++++.+.+++..+++.++++++|++.++|+++..|++.......++++++.  +++||+++++++.+++.+.+ ++++++
T Consensus       261 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--i~~gG~~l~~~~~~~~~~~~-~~~~~~  337 (544)
T 3o83_A          261 CVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKL--LQVGGASFPESLARQVPEVL-NCKLQQ  337 (544)
T ss_dssp             EEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCE--EEEESSCCCHHHHTHHHHHH-CSEEEE
T ss_pred             EEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceE--EEEcCCCCCHHHHHHHHHHh-CCcEEe
Confidence            999999999999999999999999999999999998876655666778777  99999999999999999998 899999


Q ss_pred             cccCccccccccccCCCCCCCCCCCCCcccccC-CCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhccc
Q 039837          334 AYGLTEHSCITLTYGDPANPSAGSKKNSVGFIL-PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI  412 (544)
Q Consensus       334 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~  412 (544)
                      .||+||++..+....    ........++|+|+ ++++++|+| +++++++.|+.|||+|+|++++.|||++|+.|...|
T Consensus       338 ~YG~TE~~~~~~~~~----~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f  412 (544)
T 3o83_A          338 VFGMAEGLVNYTRLD----DSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVF  412 (544)
T ss_dssp             EEECTTSCEEECCTT----SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHB
T ss_pred             eeccccccceeecCC----CchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhC
Confidence            999999875443321    11122346789996 899999999 789999999999999999999999999999999999


Q ss_pred             CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCC
Q 039837          413 DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK  492 (544)
Q Consensus       413 ~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  492 (544)
                      +.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..|+.++++++..+ ..
T Consensus       413 ~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~  491 (544)
T 3o83_A          413 DEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PE  491 (544)
T ss_dssp             CTTCCEEEEEEEEECTTSCEEEEEEEC-----------------------------------------------------
T ss_pred             CCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CC
Confidence            88999999999999999999999999999999999999999999999999999999999999888999999998765 45


Q ss_pred             CCHHHHHHHHHh-cccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          493 ESEDDIMDFVAS-NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       493 ~~~~~l~~~l~~-~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      .+.+++++++++ .|+.|++|..++++++||+|++||++|++|++++.+.
T Consensus       492 ~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  541 (544)
T 3o83_A          492 LKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS  541 (544)
T ss_dssp             --------------------------------------------------
T ss_pred             CCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence            567889999988 7999999999999999999999999999999998653

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=1.7e-76  Score=614.38  Aligned_cols=519  Identities=23%  Similarity=0.334  Sum_probs=420.4

Q ss_pred             eeeccccccCCcceeeecCCCCCCCCCCCC-HHHHHHhhhhh-----cCCceEEEEcc---CCceeeHHHHHHHHHHHHH
Q 039837            8 SVPVPLAAAHDEEHIFRSRHPAVPVPENVT-LPDFVLQDAEL-----YADKVAFVEAV---SGKAYTYAQVARDTRGFAK   78 (544)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~a~~-----~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~   78 (544)
                      ++-++|..+....+.+.........+...+ +.++|.++|+.     +|+++|+++..   .++++||+||.++++++|+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~   88 (570)
T 3c5e_A            9 SSGVDLGTENLYFQSMSLQWGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAAN   88 (570)
T ss_dssp             ------------------CCCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHH
T ss_pred             ccccccCcceeeeeecccccccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHH
Confidence            445556555555555443333334444444 56889999998     99999998732   1378999999999999999


Q ss_pred             HHHHc-CCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-----
Q 039837           79 ALRSL-GLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-----  152 (544)
Q Consensus        79 ~L~~~-Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----  152 (544)
                      +|++. |+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++++....+...     
T Consensus        89 ~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~  168 (570)
T 3c5e_A           89 VLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP  168 (570)
T ss_dssp             HHHTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCT
T ss_pred             HHHHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCC
Confidence            99998 999999999999999999999999999999999999999999999999999999999998776655331     


Q ss_pred             CCc-EEEecccccccccCHHHHHHhhhhc------CCCCCCCCCCCCCCCcCcceeeccHHHHHH-HHHhhccccCCccc
Q 039837          153 GLP-IIVLGEERIESAINWSELIEAADKA------GNNFSNDDDVKQTDLWISKGVMLTHRNLVA-NLCSTLFSVVPEMI  224 (544)
Q Consensus       153 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~tsgttG~PKgV~~t~~~l~~-~~~~~~~~~~~~~~  224 (544)
                      .+. ++.++.........+.++.......      .......+.+||||||.||||++||+.+.+ ..... ..+  ++.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~--~~~  245 (570)
T 3c5e_A          169 SLRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWT--GLQ  245 (570)
T ss_dssp             TCCEEEEESSSCCTTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTT--SCC
T ss_pred             ceeEEEEecccCccccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhc--CCC
Confidence            122 3334322222233455554432111      112233567899999999999999994432 33333 444  778


Q ss_pred             CccEEEEecchhHHHHHHHHHHhhHhccceEEEcC--ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCcccc
Q 039837          225 GQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN--RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKL  302 (544)
Q Consensus       225 ~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l  302 (544)
                      .+++++..+|++|.+++...++.++..|+++++.+  .+++..+++.++++++|++.++|+++..|++.. ....+++++
T Consensus       246 ~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~l  324 (570)
T 3c5e_A          246 ASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHL  324 (570)
T ss_dssp             TTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTC
T ss_pred             CCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccc
Confidence            89999999999999998667889999999999876  679999999999999999999999999998863 234456777


Q ss_pred             ccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcC
Q 039837          303 QLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSL  382 (544)
Q Consensus       303 ~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~  382 (544)
                      +.  +++||+++++++.++|.+.+ ++++++.||+||++..++...     ......+++|+|+++++++|+| ++++++
T Consensus       325 r~--i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~~~~~v~i~d-~~g~~~  395 (570)
T 3c5e_A          325 QN--CVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-----TMKIKPGYMGTAASCYDVQIID-DKGNVL  395 (570)
T ss_dssp             CE--EEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-----TSCCCTTCCCEECTTCCEEEEC-TTSCBC
T ss_pred             eE--EEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-----ccccCCCcccccCCCceEEEEC-CCCCCC
Confidence            77  99999999999999999988 899999999999986654432     1234567899999999999999 679999


Q ss_pred             CCCCCceEEEe-----cccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHH
Q 039837          383 PSNTPGELCVR-----SQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAI  457 (544)
Q Consensus       383 ~~g~~Gel~v~-----~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~  457 (544)
                      +.|+.|||+|+     |++++.|||++|+.|.+.| .++||+|||+|++++||++++.||.||+||++|++|+|.+||++
T Consensus       396 ~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~  474 (570)
T 3c5e_A          396 PPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENA  474 (570)
T ss_dssp             CTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHH
T ss_pred             CCCCCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHH
Confidence            99999999999     9999999999999999988 57999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccceEEEeecCCCCCceeEEEEEeCCCCC--C---CHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchH
Q 039837          458 LLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK--E---SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRR  532 (544)
Q Consensus       458 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--~---~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~  532 (544)
                      |.++|+|.+++|++.+++..++.+++++++.++..  .   ..++|+++++++|+.|++|..++++++||+|++||++|+
T Consensus       475 l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~  554 (570)
T 3c5e_A          475 LMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRA  554 (570)
T ss_dssp             HHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHH
T ss_pred             HHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHH
Confidence            99999999999999998888889999999876531  1   246889999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 039837          533 ILKDKMLE  540 (544)
Q Consensus       533 ~l~~~~~~  540 (544)
                      +|++++.+
T Consensus       555 ~L~~~~~~  562 (570)
T 3c5e_A          555 KLRDKEWK  562 (570)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99998743

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=1.3e-78  Score=624.03  Aligned_cols=487  Identities=25%  Similarity=0.391  Sum_probs=317.1

Q ss_pred             CCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           34 ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        34 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      .++|+.+.|.++|+++|+++|+++.  ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+
T Consensus         4 ~~~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga   81 (509)
T 3ivr_A            4 HDFTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA   81 (509)
T ss_dssp             TCCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred             CcCCHHHHHHHHHHHCCCceEEEEC--CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence            4679999999999999999999986  78999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhc----C-CCc-EEEecccccccccCHHHHHHh----hhhcCCC
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKG----L-GLP-IIVLGEERIESAINWSELIEA----ADKAGNN  183 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~-~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  183 (544)
                      +++|+++.++.+++.+++++++++++|++.+....+..    . ... .+.++.. ......+......    .......
T Consensus        82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  160 (509)
T 3ivr_A           82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDG-SGPFAPFKDLASDTPFSAPEFGAA  160 (509)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCC-CSSCEEGGGTCCCSCCCCCCCCTT
T ss_pred             EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCC-CcChhhHhhccCCCCCCcCCCCcc
Confidence            99999999999999999999999999999886555221    1 122 2222211 0000000000000    0011122


Q ss_pred             CCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCH
Q 039837          184 FSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFEL  263 (544)
Q Consensus       184 ~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~  263 (544)
                      ....+.+||||||.||||++||+++.+.+.+....+  ++.++++++..+|++|.+|+...+...+..|++++ ...+++
T Consensus       161 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~-~~~~~~  237 (509)
T 3ivr_A          161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW--RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVI-AAKFDP  237 (509)
T ss_dssp             SEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT--TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE-CSSCCH
T ss_pred             ccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh--CCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEE-ecccCH
Confidence            233578999999999999999999999998888777  78899999999999999998555444555555544 457899


Q ss_pred             HHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcccccc
Q 039837          264 RAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCI  343 (544)
Q Consensus       264 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~  343 (544)
                      ..+++.++++++|++.++|+++..|++..  ....+++++.  ++.+|++   ++.+++.+.+|++++++.||+||++.+
T Consensus       238 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~--~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~  310 (509)
T 3ivr_A          238 AQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRA--VTGLDTP---ETIERFEATCPNATFWATFGQSETSGL  310 (509)
T ss_dssp             HHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCE--EEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEE
T ss_pred             HHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhhe--ecccCCh---HHHHHHHHhcCCCeEEcccCccccccc
Confidence            99999999999999999999999998866  3455677777  9999987   888999999999999999999999977


Q ss_pred             ccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCce
Q 039837          344 TLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDI  423 (544)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~  423 (544)
                      ++...      ......++|+|+++++++|+| +++++++.|+.|||+|+|++++.|||++|+.|...| .+|||+|||+
T Consensus       311 ~~~~~------~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl  382 (509)
T 3ivr_A          311 STFAP------YRDRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDM  382 (509)
T ss_dssp             EEEEE------GGGSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEE
T ss_pred             cccCc------cccCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccE
Confidence            66543      112234599999999999999 579999999999999999999999999999999999 5899999999


Q ss_pred             EEEcCCCcEEEEeec--CCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHH
Q 039837          424 GYIDDDGDIFIVDRI--KELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDF  501 (544)
Q Consensus       424 ~~~~~~g~~~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  501 (544)
                      |++++||++++.||.  +|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++.++...+.++++++
T Consensus       383 ~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~  462 (509)
T 3ivr_A          383 GRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEF  462 (509)
T ss_dssp             EEECTTSCEEEEEEC-----------------------------------------------------------------
T ss_pred             EEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHH
Confidence            999999999999999  899999999999999999999999999999999999888899999999888777788999999


Q ss_pred             HHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          502 VASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       502 l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ++++|+.|++|..++++++||+|++||++|++|++++++.
T Consensus       463 l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~  502 (509)
T 3ivr_A          463 VASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQE  502 (509)
T ss_dssp             ----------------------------------------
T ss_pred             HHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence            9999999999999999999999999999999999998754

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=1e-76  Score=625.28  Aligned_cols=498  Identities=21%  Similarity=0.279  Sum_probs=419.4

Q ss_pred             CHHHHHHhhhhhcCCceEEEEcc----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc
Q 039837           37 TLPDFVLQDAELYADKVAFVEAV----SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG  112 (544)
Q Consensus        37 ~l~~~l~~~a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G  112 (544)
                      ++.+.|+++++++|+++|+++..    .++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus        77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G  156 (652)
T 1pg4_A           77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG  156 (652)
T ss_dssp             HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence            46778889999999999999731    24789999999999999999999999999999999999999999999999999


Q ss_pred             CeeecCCCCCCHHHHHHHHHhcCceEEEeccchHH------------H-hhcC---CC-cEEEecccc------cccccC
Q 039837          113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYE------------K-VKGL---GL-PIIVLGEER------IESAIN  169 (544)
Q Consensus       113 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------------~-~~~~---~~-~~~~~~~~~------~~~~~~  169 (544)
                      ++++|+++.++.+++.+++++++++++|+++....            . +...   .+ .++.++...      ......
T Consensus       157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~  236 (652)
T 1pg4_A          157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW  236 (652)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEE
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCcee
Confidence            99999999999999999999999999999865321            1 1111   12 234443211      011233


Q ss_pred             HHHHHHhhhh------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHH-hhccccCCcccCccEEEEecchhHHHHHH
Q 039837          170 WSELIEAADK------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLC-STLFSVVPEMIGQVTTLGLIPFFHIYGIT  242 (544)
Q Consensus       170 ~~~~~~~~~~------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~g~~  242 (544)
                      |.++......      ........+.+||||||.||||++||++++..+. .....+  ++.++|++++.+|++|.+|+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~g~~  314 (652)
T 1pg4_A          237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF--DYHPGDIYWCTADVGWVTGHS  314 (652)
T ss_dssp             HHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT--TCCTTCEEEECSCTTSHHHHH
T ss_pred             HHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc--CCCCCCEEEEccCCeeeechH
Confidence            5555432111      0122334678999999999999999999877653 333344  678899999999999999987


Q ss_pred             HHHHhhHhccceEEEcCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCC--CCccCccccccccEEEecCCCCH
Q 039837          243 GICCATLRNKGKVVMMNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPI--VDEFDLSKLQLRAVMTAAAPLAP  316 (544)
Q Consensus       243 ~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~v~~~G~~~~~  316 (544)
                      ..++.++..|+++++.+.    .++..+++.++++++|+++++|+++..|++...  ....+++++|.  +++|||++++
T Consensus       315 ~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~--i~~gGe~l~~  392 (652)
T 1pg4_A          315 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRI--LGSVGEPINP  392 (652)
T ss_dssp             HTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCE--EEEESSCCCH
T ss_pred             HHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEE--EEEecCCCCH
Confidence            778899999999999874    578999999999999999999999999988654  23456788777  9999999999


Q ss_pred             hHHHHHHhhcC--CCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEec
Q 039837          317 DLLSSFEKKFP--GVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRS  394 (544)
Q Consensus       317 ~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~  394 (544)
                      ++++++.+.++  ++++++.||+||++..++.....   ......+++|+|++|++++|+| ++|++++.|+.|||+|+|
T Consensus       393 ~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~---~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g  468 (652)
T 1pg4_A          393 EAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPG---AIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITD  468 (652)
T ss_dssp             HHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTT---TCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECS
T ss_pred             HHHHHHHHHhCCCCCcEEccccCcccccceecCCCC---CcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEcc
Confidence            99999999883  28999999999998766543210   1234668999999999999999 689999999999999999


Q ss_pred             --ccccccccCChhhhhcccC--CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEE
Q 039837          395 --QCVMQGYYNNEEETARTID--KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV  470 (544)
Q Consensus       395 --~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  470 (544)
                        |+++.|||++++.+...+.  .+|||+|||+|++++||++++.||.||+||++|++|++.+||++|.+||+|.+++|+
T Consensus       469 ~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vv  548 (652)
T 1pg4_A          469 SWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV  548 (652)
T ss_dssp             CCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEE
T ss_pred             CCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence              7899999999998876652  478999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCceeEEEEEeCCCCCCC---HHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837          471 SLPDEEAGEIPAACVVMNPNAKES---EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM  542 (544)
Q Consensus       471 ~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~  542 (544)
                      +.+++..|+.+++++++.++...+   .++|+++++++|+.|++|..++++++||+|++|||+|++|++++.+++
T Consensus       549 g~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~  623 (652)
T 1pg4_A          549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT  623 (652)
T ss_dssp             EEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred             EEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCC
Confidence            999888889999999998765554   478999999999999999999999999999999999999999997653

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=3.8e-77  Score=615.43  Aligned_cols=488  Identities=20%  Similarity=0.252  Sum_probs=407.2

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      ..|+.+.|.++|+++|+++|+.+.  ++++||+||.++++++|.+|++.|+++||+|+++++|+++++++++||+++|++
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v   80 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDCL--GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHA   80 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHCCCCcceecC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence            468999999999999999999987  789999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHh---hhh------cCCCCC
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEA---ADK------AGNNFS  185 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~  185 (544)
                      ++|+++.++.+++.++++.++++++|++++....+..  ...+.           +..+...   ...      ......
T Consensus        81 ~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~d~  147 (521)
T 3l8c_A           81 YIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG--ISLVS-----------LSEIESAKLAEMPYERTHSVKGDDN  147 (521)
T ss_dssp             EEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT--SEEEE-----------HHHHHHHHHHTCCCCCSSCCCTTSE
T ss_pred             EEecCccccHHHHHHHHHhCCCCEEEecCcccccccc--Ccccc-----------hhhhhhcccccCCcccCCCCCCCCc
Confidence            9999999999999999999999999998765332211  11111           1111111   000      112223


Q ss_pred             CCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCcc---C
Q 039837          186 NDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRF---E  262 (544)
Q Consensus       186 ~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~---~  262 (544)
                      ..+.+||||||.||||++||+++.+.+.+............++++...|++|..++ ..++.++..|+++++.+..   +
T Consensus       148 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~  226 (521)
T 3l8c_A          148 YYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFALPKELVAD  226 (521)
T ss_dssp             EEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEECCGGGTTC
T ss_pred             EEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEEcCHHHhhC
Confidence            45789999999999999999999988877765533377889999999999998887 5678899999999998764   8


Q ss_pred             HHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccc
Q 039837          263 LRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSC  342 (544)
Q Consensus       263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~  342 (544)
                      +..+++.+.++++|++.++|+++..+..........+++++.  +++||+++++++.+++.+.|+++++++.||+||++.
T Consensus       227 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~  304 (521)
T 3l8c_A          227 FKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTH--FYFDGEELTVSTARKLFERFPSAKIINAYGPTEATV  304 (521)
T ss_dssp             HHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCE--EEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSS
T ss_pred             HHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceE--EEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhh
Confidence            899999999999999999999999998877666667788777  999999999999999999999999999999999987


Q ss_pred             cccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhccc---CCCCeee
Q 039837          343 ITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI---DKNGWLH  419 (544)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~~~~~  419 (544)
                      .++...............++|+|+++++++|+| ++|.+++.|+.|||+|+||+++.|||++|+.|.+.|   ++++||+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~  383 (521)
T 3l8c_A          305 ALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYH  383 (521)
T ss_dssp             CSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEE
T ss_pred             hhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeee
Confidence            665432110000123456899999999999999 689999999999999999999999999999999887   5678999


Q ss_pred             cCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCC-CCceeEEEEEeCCCCCCC----
Q 039837          420 TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEE-AGEIPAACVVMNPNAKES----  494 (544)
Q Consensus       420 TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~----  494 (544)
                      |||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++..++. .++.+++++++.++....    
T Consensus       384 TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~  463 (521)
T 3l8c_A          384 TGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRE  463 (521)
T ss_dssp             EEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSH
T ss_pred             CCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccc
Confidence            999999999999999999999999999999999999999999999999999887554 457889999988764321    


Q ss_pred             ---HHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          495 ---EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       495 ---~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                         .++++++++++|+.|++|..++++++||+|++||++|++|+++++++
T Consensus       464 ~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~  513 (521)
T 3l8c_A          464 LELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNR  513 (521)
T ss_dssp             HHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC--
T ss_pred             hhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcC
Confidence               46789999999999999999999999999999999999999998665

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=7.6e-78  Score=625.90  Aligned_cols=486  Identities=21%  Similarity=0.252  Sum_probs=319.9

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG  112 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G  112 (544)
                      +...++.++|.++|+++|+++|+++.  ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus        72 ~~~~~l~~~l~~~a~~~pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G  149 (570)
T 4gr5_A           72 PAGACVHELFEAQAARAPDAVALLHE--ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAG  149 (570)
T ss_dssp             CCSCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred             CccCCHHHHHHHHHHHCCCCeEEECC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHC
Confidence            45679999999999999999999986  7899999999999999999999999999999999999999999999999999


Q ss_pred             CeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhhhcCCCCCCCCCCCC
Q 039837          113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQ  192 (544)
Q Consensus       113 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ts  192 (544)
                      ++++|+++.++.+++.+++++++++++|++.+....+...  ..+.+.+........    ............+.+.+||
T Consensus       150 ~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~d~a~i~~TS  223 (570)
T 4gr5_A          150 GGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGT--TTLYVEDEAASDAPA----GNLATGVGPEDVACVMFTS  223 (570)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSS--EEEECCC-------C----CCCCCCCCTTSEEEEECCS
T ss_pred             CEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCC--cceeeeccccccccc----cccCCCCCCCCeEEEEECC
Confidence            9999999999999999999999999999987764443221  112111110000000    0000011223334678999


Q ss_pred             CCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcC--ccCHHHHHHHH
Q 039837          193 TDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN--RFELRAFLDAL  270 (544)
Q Consensus       193 gttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i  270 (544)
                      ||||.||||++||+++.+.+.. ...+  ++.++++++..+|++|..+. ..++.++..|+++++.+  .+++..+++.+
T Consensus       224 GTTG~PKgV~~th~~l~~~~~~-~~~~--~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i  299 (570)
T 4gr5_A          224 GSTGRPKGVMSPHRALTGTYLG-QDYA--GFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQSGQNPDPLEIGELV  299 (570)
T ss_dssp             SCCSSCCCEEEEHHHHHHHHSS-CCSS--CCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECSSSSCCHHHHHHHH
T ss_pred             cCCCCCeEEEEecHHHHHHHHh-hhhc--CCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcCCccCCHHHHHHHH
Confidence            9999999999999999877655 2333  67889999999999887665 56788999999999986  46899999999


Q ss_pred             HHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCC
Q 039837          271 ITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDP  350 (544)
Q Consensus       271 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~  350 (544)
                      +++++|++.++|+++..|++...   ..++++|.  +++||+++++++.+++.+.++++++++.||+||++.+++.....
T Consensus       300 ~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~--~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~  374 (570)
T 4gr5_A          300 ARHGVTMLQLSASLFNFLVDEVP---EAFEGVRY--AITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVV  374 (570)
T ss_dssp             HHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSE--EEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECC
T ss_pred             HHcCCcEEEecHHHHHHHHhhch---hhCCCceE--EEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeec
Confidence            99999999999999999987542   34677777  99999999999999999999899999999999998766543211


Q ss_pred             CCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCC--------CCeeecCc
Q 039837          351 ANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDK--------NGWLHTGD  422 (544)
Q Consensus       351 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------~~~~~TGD  422 (544)
                      ... ......++|+|+++++++|+| +++++++.|+.|||+|+|++++.|||++|+.|.+.|..        ++||+|||
T Consensus       375 ~~~-~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGD  452 (570)
T 4gr5_A          375 AGD-LSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGD  452 (570)
T ss_dssp             GGG-TTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEE
T ss_pred             ccc-cCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCC
Confidence            111 234456799999999999999 68999999999999999999999999999999988743        37999999


Q ss_pred             eEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCC-CCCCHHHHHHH
Q 039837          423 IGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN-AKESEDDIMDF  501 (544)
Q Consensus       423 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~  501 (544)
                      +|++++||++++.||+||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.++++++..+. ...+.++|+++
T Consensus       453 lg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~  532 (570)
T 4gr5_A          453 LARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRH  532 (570)
T ss_dssp             EEEECTTSCEEEEEC-----------------------------------------------------------------
T ss_pred             eEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888888889999887654 34577899999


Q ss_pred             HHhcccCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 039837          502 VASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK  537 (544)
Q Consensus       502 l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~  537 (544)
                      ++++|+.|++|..++++++||+|++|||+|++|++.
T Consensus       533 l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          533 VAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS  568 (570)
T ss_dssp             ------------------------------------
T ss_pred             HHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence            999999999999999999999999999999999874

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.2e-75  Score=605.16  Aligned_cols=484  Identities=23%  Similarity=0.321  Sum_probs=401.8

Q ss_pred             CHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeee
Q 039837           37 TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFS  116 (544)
Q Consensus        37 ~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v  116 (544)
                      ++.++|.++++ +|+++|+++.  ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++
T Consensus        25 ~~~~~l~~~~~-~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v  101 (529)
T 2v7b_A           25 FAAYLFRLNET-RAGKTAYIDD--TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPV  101 (529)
T ss_dssp             HHHHHHHHTGG-GTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHhhhc-cCCceEEEeC--CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEE
Confidence            48899999999 9999999986  68999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-----C--CcEEEeccccc--ccccCHHHHHHhhhh------cC
Q 039837          117 GANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-----G--LPIIVLGEERI--ESAINWSELIEAADK------AG  181 (544)
Q Consensus       117 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~--~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~  181 (544)
                      |+++.++.+++.+++++++++++|++.+....+...     .  ..++..+....  .....++++......      ..
T Consensus       102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (529)
T 2v7b_A          102 VANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATG  181 (529)
T ss_dssp             ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCSSCCCCC
T ss_pred             ecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCcccccCCC
Confidence            999999999999999999999999998766544322     1  22233232111  012245555442111      11


Q ss_pred             CCCCCCCCCCCCCCcCcceeeccHHHH-HHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEc-C
Q 039837          182 NNFSNDDDVKQTDLWISKGVMLTHRNL-VANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM-N  259 (544)
Q Consensus       182 ~~~~~~~~~tsgttG~PKgV~~t~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~  259 (544)
                      ......+.+||||||.||||++||+++ .+........+  ++.++++++..+|++|.+|+...++.++..|+++++. +
T Consensus       182 ~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~  259 (529)
T 2v7b_A          182 CDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL--GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE  259 (529)
T ss_dssp             TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC--CCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCS
T ss_pred             CCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc--CCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecC
Confidence            122335678999999999999999999 66666555555  7788999999999999999877778899999999987 5


Q ss_pred             ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcc
Q 039837          260 RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE  339 (544)
Q Consensus       260 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE  339 (544)
                      .+++..+++.++++++|++.++|+++..|++..........+++.  +++||+++++++.++|.+.+ ++++++.||+||
T Consensus       260 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE  336 (529)
T 2v7b_A          260 RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRI--CTSAGEALPREIGERFTAHF-GCEILDGIGSTE  336 (529)
T ss_dssp             CCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCE--EEECSSCCCHHHHHHHHHHH-SCCEEEEEECTT
T ss_pred             CCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEE--EEEcCCCCCHHHHHHHHHHh-CCceeeeEchhh
Confidence            679999999999999999999999999998865433321224555  99999999999999999988 899999999999


Q ss_pred             ccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeee
Q 039837          340 HSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLH  419 (544)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~  419 (544)
                      ++.+++...    . .....+++|+|+++++++|+| ++|++++.|+.|||+|+|++++.|||++++.|...| .++||+
T Consensus       337 ~~~~~~~~~----~-~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~  409 (529)
T 2v7b_A          337 MLHIFLSNR----A-GAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIR  409 (529)
T ss_dssp             TSSEEEECC----T-TCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEE
T ss_pred             cCceeeccc----c-CCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hcCCcc
Confidence            976655432    1 224567899999999999999 689999999999999999999999999999999988 589999


Q ss_pred             cCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCC---CHH
Q 039837          420 TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKE---SED  496 (544)
Q Consensus       420 TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~  496 (544)
                      |||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++. ++..++.+++++++.++...   ..+
T Consensus       410 TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~  488 (529)
T 2v7b_A          410 SGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAE  488 (529)
T ss_dssp             EEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHH
T ss_pred             cCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHH
Confidence            99999999999999999999999999999999999999999999999999998 56667788999998765432   236


Q ss_pred             HHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHH
Q 039837          497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD  536 (544)
Q Consensus       497 ~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~  536 (544)
                      +++++++++|+.|++|..++++++||+|++||++|++|++
T Consensus       489 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          489 ELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE  528 (529)
T ss_dssp             HHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred             HHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence            7999999999999999999999999999999999999986

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=3.6e-76  Score=618.63  Aligned_cols=492  Identities=23%  Similarity=0.337  Sum_probs=421.0

Q ss_pred             CCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHh
Q 039837           32 VPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAA  111 (544)
Q Consensus        32 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~  111 (544)
                      .....|+.++|.++|+  ||++|+++.  ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus        23 ~~~~~~l~~~~~~~a~--pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~a   98 (617)
T 3rg2_A           23 YWQDLPLTDILTRHAA--SDSIAVIDG--ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL   98 (617)
T ss_dssp             SCCCCCTTHHHHTTTT--CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHhhC--CCCeEEecC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhc
Confidence            3456899999999998  999999987  789999999999999999999999999999999999999999999999999


Q ss_pred             cCeeecCCCCCCHHHHHHHHHhcCceEEEeccchH--------HHhh-c-CCCcEEEecccccccccCHHHHHHhhhh--
Q 039837          112 GGVFSGANPTAHASELKKQVDAADAKLIVSYAPIY--------EKVK-G-LGLPIIVLGEERIESAINWSELIEAADK--  179 (544)
Q Consensus       112 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  179 (544)
                      |+++||+++.++.+++.++++++++++++++....        ..+. . .....+......  ....+.........  
T Consensus        99 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  176 (617)
T 3rg2_A           99 GVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDS--GEHNLQDAINHPAEDF  176 (617)
T ss_dssp             TCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCC--STTBHHHHHHSCCSSC
T ss_pred             CeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccc--cccchhhhhccccccc
Confidence            99999999999999999999999999999987643        1111 1 123333322111  11223333222111  


Q ss_pred             ----cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHH-HHHhhHhccce
Q 039837          180 ----AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITG-ICCATLRNKGK  254 (544)
Q Consensus       180 ----~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~  254 (544)
                          ......+++.+||||||.||||++||+++.+.+.+....+  ++..++++++.+|++|.+++.. .++.++..|++
T Consensus       177 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~  254 (617)
T 3rg2_A          177 TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC--QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGT  254 (617)
T ss_dssp             CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH--TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCE
T ss_pred             CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc--CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCE
Confidence                1112234578899999999999999999999998888777  7889999999999999988754 57889999999


Q ss_pred             EEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCC--CccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEE
Q 039837          255 VVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIV--DEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQ  332 (544)
Q Consensus       255 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~  332 (544)
                      +++.+..++..+++.++++++|++.++|+++..|++....  ....+++++.  +++|||++++++.++|.+.+ +++++
T Consensus       255 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~--i~~gGe~l~~~~~~~~~~~~-~~~~~  331 (617)
T 3rg2_A          255 VVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKL--LQVGGARLSATLAARIPAEI-GCQLQ  331 (617)
T ss_dssp             EEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCE--EEEESSCCCHHHHHHHHHHT-CSEEE
T ss_pred             EEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccE--EEEcCCcCCHHHHHHHHHHh-CCcEE
Confidence            9999888999999999999999999999999998764332  2235677777  99999999999999999998 89999


Q ss_pred             ecccCccccccccccCCCCCCCCCCCCCcccccC-CCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcc
Q 039837          333 EAYGLTEHSCITLTYGDPANPSAGSKKNSVGFIL-PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETART  411 (544)
Q Consensus       333 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~  411 (544)
                      |.||+||++..+....    ........++|.|+ ++++++|+| +++++++.|+.|||+|+|+++++||+++|+.|...
T Consensus       332 ~~YG~tE~~~~~~~~~----~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~  406 (617)
T 3rg2_A          332 QVFGMAEGLVNYTRLD----DSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASA  406 (617)
T ss_dssp             EEEEETTEEEEECCTT----SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHH
T ss_pred             EEeccCcceeecccCC----CcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhc
Confidence            9999999886544321    11112235789997 788999999 78999999999999999999999999999999999


Q ss_pred             cCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCC
Q 039837          412 IDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA  491 (544)
Q Consensus       412 ~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  491 (544)
                      |..++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..+  
T Consensus       407 f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--  484 (617)
T 3rg2_A          407 FDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--  484 (617)
T ss_dssp             BCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--
T ss_pred             cCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--
Confidence            999999999999999999999999999999999999999999999999999999999999998888889999998865  


Q ss_pred             CCCHHHHHHHHHh-cccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          492 KESEDDIMDFVAS-NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       492 ~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ..+.+++.+++++ .|+.|++|..++++++||+|++||++|++|++++.+.
T Consensus       485 ~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~  535 (617)
T 3rg2_A          485 PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR  535 (617)
T ss_dssp             CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcc
Confidence            4678899999998 6999999999999999999999999999999988654

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=8.7e-77  Score=620.37  Aligned_cols=484  Identities=16%  Similarity=0.141  Sum_probs=397.0

Q ss_pred             CCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHH
Q 039837           29 AVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGI  108 (544)
Q Consensus        29 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~  108 (544)
                      ..+.....|+.++|.++|+++|+++|+++.  ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus        20 ~~~~~~~~tl~~~~~~~a~~~Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lai   97 (620)
T 4dg8_A           20 LLDLYAHPTVVARFSEMAALHPHREAIRDR--FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAI   97 (620)
T ss_dssp             TTSGGGSCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHHHHHhCCCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            344456779999999999999999999987  789999999999999999999999999999999999999999999999


Q ss_pred             HHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhhhcCCCCCCCC
Q 039837          109 MAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDD  188 (544)
Q Consensus       109 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (544)
                      +++|++++|+++.++.+++.++++++++++++++........  ......+....... ...     ..........+++
T Consensus        98 lkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--~~~~~~~~~~~~~~-~~~-----~~~~~~~~d~a~i  169 (620)
T 4dg8_A           98 LLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--GLPCVPVRHLPAAP-ASV-----ARPCFAADQIAYI  169 (620)
T ss_dssp             HHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--TSCEEEGGGCCCCC-CCS-----SCCCCCTTSEEEE
T ss_pred             HHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--CCceeeeccCCcCC-ccc-----cCCCCCCCCeEEE
Confidence            999999999999999999999999999999997654322211  11222211100000 000     0000112333467


Q ss_pred             CCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcC--ccCHHHH
Q 039837          189 DVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN--RFELRAF  266 (544)
Q Consensus       189 ~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~  266 (544)
                      .|||||||.||||+++|+++.+.+.. ...+  ++.++++++..+|++|..++ ..++.++..|+++++.+  .+++..+
T Consensus       170 iyTSGSTG~PKgV~~th~~l~~~~~~-~~~~--~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~  245 (620)
T 4dg8_A          170 NFSSGTTGRPKAIACTHAGITRLCLG-QSFL--AFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVLNDLGPLDPGVL  245 (620)
T ss_dssp             EEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG--TTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCSSSCCHHHH
T ss_pred             EECCCccccCeEEEEchHHHHHHHHH-HHhh--CCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEeCccccCCHHHH
Confidence            89999999999999999999887765 3334  67899999999999999987 56889999999999964  5789999


Q ss_pred             HHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccc
Q 039837          267 LDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLT  346 (544)
Q Consensus       267 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~  346 (544)
                      .+.++++++|++.++|+++..|++..   ...+++++.  +++|||++++++.+++.+.+++++++|.||+||++.+++.
T Consensus       246 ~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~--v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~  320 (620)
T 4dg8_A          246 RQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQ--LLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCC  320 (620)
T ss_dssp             HHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSE--EEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEE
T ss_pred             HHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccE--EEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEE
Confidence            99999999999999999999998642   335677777  9999999999999999988889999999999999876654


Q ss_pred             cCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCc-CCCCCCceEEEecccccccccCChhhhhcccCCC-------Cee
Q 039837          347 YGDPANPSAGSKKNSVGFILPNLEVKFINPETGKS-LPSNTPGELCVRSQCVMQGYYNNEEETARTIDKN-------GWL  418 (544)
Q Consensus       347 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~-~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~-------~~~  418 (544)
                      ....... ......++|+|+++++++|+|+ ++.+ ++.|+.|||+|+|+++++|||++|+.|.+.|..+       +||
T Consensus       321 ~~~~~~~-~~~~~~~iG~p~~~~~~~i~d~-~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~y  398 (620)
T 4dg8_A          321 HVVTDDD-LEEDDIPIGKAIAGTAVLLLDE-HGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAY  398 (620)
T ss_dssp             EECCTGG-GGSSSCCCBEECTTEEEEEECT-TSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEE
T ss_pred             Eeccccc-cCCCCCCceecccCcEEEEECc-cCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEE
Confidence            3221111 2345678999999999999995 5555 8899999999999999999999999999988443       799


Q ss_pred             ecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHH
Q 039837          419 HTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDI  498 (544)
Q Consensus       419 ~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  498 (544)
                      +|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.++...+..+ ++++...      +.+
T Consensus       399 rTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv-~~~~~~~------~~~  471 (620)
T 4dg8_A          399 RTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLL-CAWTGKA------DAS  471 (620)
T ss_dssp             EEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEE-EEEEECT------TCC
T ss_pred             eCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEE-EEEecCh------HHH
Confidence            999999999999999999999999999999999999999999999999999998877444444 4443321      223


Q ss_pred             HHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          499 MDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       499 ~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      .+.++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus       472 ~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~  513 (620)
T 4dg8_A          472 PQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE  513 (620)
T ss_dssp             CHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred             HHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence            456778899999999999999999999999999999987754

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.5e-75  Score=616.31  Aligned_cols=499  Identities=21%  Similarity=0.307  Sum_probs=414.6

Q ss_pred             CHHHHHHhhhhhcCCceEEEEcc----CCceeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCccHHHHHHHHHHh
Q 039837           37 TLPDFVLQDAELYADKVAFVEAV----SGKAYTYAQVARDTRGFAKALR-SLGLRKGQVVIVVLPNVAEYGIVALGIMAA  111 (544)
Q Consensus        37 ~l~~~l~~~a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~-~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~  111 (544)
                      ++.+.|+++++++|+++|+++..    .++++||+||.++++++|+.|+ +.|+++||+|+++++|++++++++|||+++
T Consensus        83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~  162 (663)
T 1ry2_A           83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI  162 (663)
T ss_dssp             HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence            56778889999999999999731    3478999999999999999999 999999999999999999999999999999


Q ss_pred             cCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHH---------Hhhc----C-CCc-EEEeccccc-------ccccC
Q 039837          112 GGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYE---------KVKG----L-GLP-IIVLGEERI-------ESAIN  169 (544)
Q Consensus       112 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~----~-~~~-~~~~~~~~~-------~~~~~  169 (544)
                      |++++|+++.++.+++.+++++++++++|+++....         .+.+    . .++ +++++....       .....
T Consensus       163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  242 (663)
T 1ry2_A          163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLD  242 (663)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEE
T ss_pred             CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCcccc
Confidence            999999999999999999999999999999876421         1111    1 122 333332110       11233


Q ss_pred             HHHHHHhhhh------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHh-hccccCCcccCccEEEEecchhHHHHHH
Q 039837          170 WSELIEAADK------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCS-TLFSVVPEMIGQVTTLGLIPFFHIYGIT  242 (544)
Q Consensus       170 ~~~~~~~~~~------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~g~~  242 (544)
                      |.++......      ........+.+||||||.||||++||++++..+.. ....+  ++..+|++++..|++|.+|+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~g~~  320 (663)
T 1ry2_A          243 WATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF--DTHQEDVFFTAGDIGWITGHT  320 (663)
T ss_dssp             HHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS--CCCSSCEEEECSCTTSHHHHH
T ss_pred             HHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc--CCCCCcEEEEcCCcHHhhhhH
Confidence            5554432111      11234456789999999999999999998766543 33344  678899999999999999987


Q ss_pred             HHHHhhHhccceEEEcCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCC--CCccCccccccccEEEecCCCCH
Q 039837          243 GICCATLRNKGKVVMMNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPI--VDEFDLSKLQLRAVMTAAAPLAP  316 (544)
Q Consensus       243 ~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~v~~~G~~~~~  316 (544)
                      ..++.++..|+++++.+.    .++..+++.|+++++|+++++|+++..|.+...  ....+++++|.  +++|||++++
T Consensus       321 ~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~--i~~gGe~l~~  398 (663)
T 1ry2_A          321 YVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRC--LGSVGEPIAA  398 (663)
T ss_dssp             HTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCE--EEECSSCCCH
T ss_pred             HHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEE--EEEEcCCCCH
Confidence            778899999999999864    478999999999999999999999999988654  23456788777  9999999999


Q ss_pred             hHHHHHHhhcC--CCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCC-CCCceEEEe
Q 039837          317 DLLSSFEKKFP--GVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPS-NTPGELCVR  393 (544)
Q Consensus       317 ~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~-g~~Gel~v~  393 (544)
                      ++++++.+.++  ++++++.||+||++..++.....  .......+++|+|++|++++|+|+++|++++. |+.|||+++
T Consensus       399 ~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~  476 (663)
T 1ry2_A          399 EVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAG--GVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVK  476 (663)
T ss_dssp             HHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTT--TCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEES
T ss_pred             HHHHHHHHHhCCCCceEEEeECCccccCeeeccCCC--CCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEe
Confidence            99999999883  38999999999998766543210  01235678999999999999999558999988 999999999


Q ss_pred             c--ccccccccCChhhhhcccC--CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEE
Q 039837          394 S--QCVMQGYYNNEEETARTID--KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV  469 (544)
Q Consensus       394 ~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  469 (544)
                      |  |+++.|||++++.+.+.|.  .+|||+|||+|++++||++++.||.||+||++|++|++.+||++|.+||+|.+++|
T Consensus       477 g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~V  556 (663)
T 1ry2_A          477 AAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAV  556 (663)
T ss_dssp             SCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEE
T ss_pred             cCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEE
Confidence            9  5899999999998887763  37899999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCceeEEEEEeCCCCC---C-C------HHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837          470 VSLPDEEAGEIPAACVVMNPNAK---E-S------EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML  539 (544)
Q Consensus       470 ~~~~~~~~~~~~~~~v~~~~~~~---~-~------~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~  539 (544)
                      ++.+++..|+.+++++++.++..   . +      .++|+++++++|+++++|..|+++++||+|++||++|++|++++.
T Consensus       557 vg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~  636 (663)
T 1ry2_A          557 VGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILA  636 (663)
T ss_dssp             ECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC
T ss_pred             EEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHc
Confidence            99998888899999999877643   2 2      478999999999999999999999999999999999999999876


Q ss_pred             Hh
Q 039837          540 EK  541 (544)
Q Consensus       540 ~~  541 (544)
                      ++
T Consensus       637 ~~  638 (663)
T 1ry2_A          637 GE  638 (663)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=3.3e-76  Score=604.08  Aligned_cols=475  Identities=24%  Similarity=0.322  Sum_probs=388.6

Q ss_pred             CCCHHHHHHhhhhhcCC-ceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837           35 NVTLPDFVLQDAELYAD-KVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG  113 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~  113 (544)
                      .+|+.+.|.++++++|+ ++|+++.  ++++||+||.++++++|.+|.     .|++|+++++|+++++++++||+++|+
T Consensus        21 ~~tl~~~l~~~a~~~p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga   93 (505)
T 3nyq_A           21 MSSLFPALSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGV   93 (505)
T ss_dssp             ---CCTTTSSCCCSGGGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTC
T ss_pred             cchhHHHHHHHHHhCCCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence            56889999999999998 9999997  789999999999999998874     489999999999999999999999999


Q ss_pred             eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhhhcCCCCCCCCCCCCC
Q 039837          114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQT  193 (544)
Q Consensus       114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsg  193 (544)
                      +++|+++.++.+++.+++++++++++|++.+.........+..+.++........        ...........+.+|||
T Consensus        94 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~d~a~i~~TSG  165 (505)
T 3nyq_A           94 AAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVRARGAVP--------EDGADDGDPALVVYTSG  165 (505)
T ss_dssp             CEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTTCCCCCC--------CCCCCTTSEEEEEEECC
T ss_pred             EEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhccccccccccccccCCC--------CCCCCCCCeEEEEeCCC
Confidence            9999999999999999999999999999865211111111223322211100000        01112233346789999


Q ss_pred             CCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHc
Q 039837          194 DLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITH  273 (544)
Q Consensus       194 ttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~  273 (544)
                      |||.||||++||+++.+.+.+....+  ++.+.++++..+|++|.+|+...++.++..|+++++.+.+++..+++.+ ++
T Consensus       166 TTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~  242 (505)
T 3nyq_A          166 TTGPPKGAVIPRRALATTLDALADAW--QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-ND  242 (505)
T ss_dssp             SSSSCEEEEEEHHHHHHHHHHHHHHH--TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TT
T ss_pred             CcCCCCeEEEeHHHHHHHHHHHHHHh--CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hh
Confidence            99999999999999999998888777  7889999999999999999877789999999999999999999999999 88


Q ss_pred             CceeeecchHHHHHHhcCCCCC---ccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCC
Q 039837          274 EVTFAPIVPPIILSLVKDPIVD---EFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDP  350 (544)
Q Consensus       274 ~~t~~~~~P~~~~~l~~~~~~~---~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~  350 (544)
                      ++|+++++|+++..|++.....   ...++++++  +++||+++++++.+++.+.+ +++++|.||+||++..++...  
T Consensus       243 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~--i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~--  317 (505)
T 3nyq_A          243 GATMLFGVPTMYHRIAETLPADPELAKALAGARL--LVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVRA--  317 (505)
T ss_dssp             TCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSE--EEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT--
T ss_pred             CCeEEEehHHHHHHHHHhhhcCchhhcccccceE--EEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccCC--
Confidence            9999999999999998733211   234556666  99999999999999999988 899999999999987665432  


Q ss_pred             CCCCCCCCCCcccccCCCceEEEEeCCCCCcCCC---CCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEc
Q 039837          351 ANPSAGSKKNSVGFILPNLEVKFINPETGKSLPS---NTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYID  427 (544)
Q Consensus       351 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~---g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~  427 (544)
                         ......+++|+|+++++++|+| +++.+++.   |+.|||+|+|++++.|||++|+.|...|..+|||+|||+|+++
T Consensus       318 ---~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~  393 (505)
T 3nyq_A          318 ---DGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRD  393 (505)
T ss_dssp             ---TSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEEC
T ss_pred             ---CCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEEC
Confidence               1345567899999999999999 57888776   8999999999999999999999999999889999999999999


Q ss_pred             CCCcEEEEeec-CCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCC-CCCCCHHHHHHHHHhc
Q 039837          428 DDGDIFIVDRI-KELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP-NAKESEDDIMDFVASN  505 (544)
Q Consensus       428 ~~g~~~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~l~~~  505 (544)
                      +||++++.||. ||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++.+ ....+.++++++++++
T Consensus       394 ~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~  473 (505)
T 3nyq_A          394 PDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAAR  473 (505)
T ss_dssp             TTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHH
T ss_pred             CCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhh
Confidence            99999999998 589999999999999999999999999999999999988999999999876 3456789999999999


Q ss_pred             ccCCCceeEEEEeecCCCCCCcccchHHHHH
Q 039837          506 VATYKKVRVLHFVDGIPKSHSGKIMRRILKD  536 (544)
Q Consensus       506 l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~  536 (544)
                      |+.|++|..++++++||+|++||++|++|++
T Consensus       474 L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          474 LAPHKRPRVVRYLDAVPRNDMGKIMKRALNR  504 (505)
T ss_dssp             TCGGGSCSEEEECSCCCC-------------
T ss_pred             CCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence            9999999999999999999999999999986

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.5e-74  Score=593.12  Aligned_cols=478  Identities=21%  Similarity=0.334  Sum_probs=382.8

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF  115 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  115 (544)
                      +||.++|.++|+++|+++|+++.  ++++||+||.++++++|++|++.   +||+|+++++|+++++++++||+++|+++
T Consensus         1 mtl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~   75 (501)
T 3ipl_A            1 MSLDFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEI   75 (501)
T ss_dssp             --CCCHHHHHHHHHTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHhcCCceEEEeC--CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence            57888999999999999999986  78999999999999999999986   89999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC----CCcEEEec---ccccc--ccc----CHHHHHH-------
Q 039837          116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----GLPIIVLG---EERIE--SAI----NWSELIE-------  175 (544)
Q Consensus       116 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~---~~~~~--~~~----~~~~~~~-------  175 (544)
                      +|+++.++.+++.++++.++++++|++.+........    .+......   .....  ...    .......       
T Consensus        76 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (501)
T 3ipl_A           76 AMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNI  155 (501)
T ss_dssp             EECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCHHHH
T ss_pred             EecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCcccc
Confidence            9999999999999999999999999987654332110    00000000   00000  000    0000000       


Q ss_pred             hhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceE
Q 039837          176 AADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV  255 (544)
Q Consensus       176 ~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~  255 (544)
                      ............+.+||||||.||||++||+++.+.+......+  ++..++++++.+|++|.+|+. .++.++..|+++
T Consensus       156 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~  232 (501)
T 3ipl_A          156 LNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL--GFDRDTNWLSVLPIYHISGLS-VLLRAVIEGFTV  232 (501)
T ss_dssp             TCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT--CCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEE
T ss_pred             cccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh--CCCccCEEEEeCcHHHHHHHH-HHHHHHHcCceE
Confidence            00011223344678999999999999999999999988887777  788999999999999999984 578899999999


Q ss_pred             EEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecc
Q 039837          256 VMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAY  335 (544)
Q Consensus       256 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  335 (544)
                      ++.+.+++..+++.++++++|++.++|+++..|++.......   +++.  +++||+++++++.+++.+ + ++++++.|
T Consensus       233 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---~lr~--i~~gG~~l~~~~~~~~~~-~-~~~~~~~Y  305 (501)
T 3ipl_A          233 RIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY---NLQK--ILLGGAKLSATMIETALQ-Y-NLPIYNSF  305 (501)
T ss_dssp             EECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT---TCCE--EEECSSCCCHHHHHHHHH-T-TCCEEEEE
T ss_pred             EeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC---cccE--EEEeCCCCCHHHHHHHHH-h-CCCEeccc
Confidence            999999999999999999999999999999999876543322   4455  999999999999999988 4 89999999


Q ss_pred             cCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCC
Q 039837          336 GLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKN  415 (544)
Q Consensus       336 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~  415 (544)
                      |+||++..+.....   ........++|+|+++++++|+|++      .|+.|||+|+|+.++.|||++++.+.. + .+
T Consensus       306 G~TE~~~~~~~~~~---~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~  374 (501)
T 3ipl_A          306 GMTETCSQFLTATP---EMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-EN  374 (501)
T ss_dssp             EEGGGTEEEEEECH---HHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ET
T ss_pred             cccccccceeecCc---cccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cC
Confidence            99999875544321   0012355789999999999999953      467899999999999999999998877 5 68


Q ss_pred             CeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 039837          416 GWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE  495 (544)
Q Consensus       416 ~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  495 (544)
                      |||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..  ...+.
T Consensus       375 g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~  452 (501)
T 3ipl_A          375 GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISK  452 (501)
T ss_dssp             TEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCH
T ss_pred             CceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCH
Confidence            9999999999999999999999999999999999999999999999999999999999988888889988864  45688


Q ss_pred             HHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          496 DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       496 ~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ++++++++++|+.|++|..++++++||+|++||++|++|++...++
T Consensus       453 ~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~  498 (501)
T 3ipl_A          453 AQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH  498 (501)
T ss_dssp             HHHHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred             HHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence            9999999999999999999999999999999999999999987654

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=3.9e-74  Score=649.00  Aligned_cols=517  Identities=19%  Similarity=0.234  Sum_probs=435.1

Q ss_pred             CCCCcceeeccccccCCcceee-ecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHH
Q 039837            2 AMPNSFSVPVPLAAAHDEEHIF-RSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKAL   80 (544)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L   80 (544)
                      ++|+..+.++++.++++..++. .++.+..+.+ ..++.++|.++++++|+++|+++.  ++++||+||.++++++|++|
T Consensus       430 ~~p~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L  506 (1304)
T 2vsq_A          430 QNPDQPVSTINLVDDREREFLLTGLNPPAQAHE-TKPLTYWFKEAVNANPDAPALTYS--GQTLSYRELDEEANRIARRL  506 (1304)
T ss_dssp             HSTTSBGGGCCCCCHHHHHHHHTTTSCCCCCCC-CCCHHHHHHHHHHHCTTSEEEESS--SCEEEHHHHHHHHHHHHHHH
T ss_pred             cCccccccccCCCCHHHHHHHHHhcCCCCCCCC-CCCHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHH
Confidence            4789999999999988887764 4444444444 379999999999999999999986  78999999999999999999


Q ss_pred             HHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC--CcEEE
Q 039837           81 RSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG--LPIIV  158 (544)
Q Consensus        81 ~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~  158 (544)
                      ++.|+++|++|+++++|++++++++|||+++|+++||++|.++.+++.++++++++++++++.+....+....  ...+.
T Consensus       507 ~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~  586 (1304)
T 2vsq_A          507 QKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLF  586 (1304)
T ss_dssp             HHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEE
T ss_pred             HhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999887655433222  12222


Q ss_pred             ecccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHH
Q 039837          159 LGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHI  238 (544)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  238 (544)
                      +++........ .   ...........+++.|||||||.||||+++|+++.+. .+....+  ++..+++++.+.|++|.
T Consensus       587 ~~~~~~~~~~~-~---~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~--~~~~~d~~l~~~~~~fd  659 (1304)
T 2vsq_A          587 IDDQTRFEEQA-S---DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM--AFSDQDTFLSVSNYAFD  659 (1304)
T ss_dssp             SSCGGGGGSCS-S---CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS--CCCTTCEEEECSCTTST
T ss_pred             ecccccccccc-C---CCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc--CCCCCCEEEEECCccHH
Confidence            22111000000 0   0000111223346789999999999999999999876 4444444  77889999999999998


Q ss_pred             HHHHHHHHhhHhccceEEEcCc---cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCC
Q 039837          239 YGITGICCATLRNKGKVVMMNR---FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLA  315 (544)
Q Consensus       239 ~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~  315 (544)
                      .+. ..++.++..|+++++.+.   .++..+.+.++++++|++.++|+++..|.+..   ...++++|.  +++|||+++
T Consensus       660 ~~~-~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~--~~~gGe~l~  733 (1304)
T 2vsq_A          660 AFT-FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRC--ILFGGERAS  733 (1304)
T ss_dssp             HHH-HHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSE--EEEESSCCC
T ss_pred             HHH-HHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccE--EEEecCCCC
Confidence            876 678999999999999874   58999999999999999999999999997642   223456666  999999999


Q ss_pred             HhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecc
Q 039837          316 PDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQ  395 (544)
Q Consensus       316 ~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~  395 (544)
                      +++.++|.+.+++++++|.||+||++..++....... .......++|+|+++++++|+| +++++++.|+.|||+|+|+
T Consensus       734 ~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~  811 (1304)
T 2vsq_A          734 VPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDL-PDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGM  811 (1304)
T ss_dssp             HHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCC-CSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEET
T ss_pred             HHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCc-cccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEecc
Confidence            9999999998877899999999999877655432111 1233456899999999999999 6899999999999999999


Q ss_pred             cccccccCChhhhhcccC------CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEE
Q 039837          396 CVMQGYYNNEEETARTID------KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV  469 (544)
Q Consensus       396 ~~~~gy~~~~~~~~~~~~------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  469 (544)
                      ++++||+++|+.|.+.|.      +++||+|||+|++++||.++++||.||+||++|++|+|.+||++|.++|+|.+++|
T Consensus       812 ~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V  891 (1304)
T 2vsq_A          812 GVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVV  891 (1304)
T ss_dssp             TCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEE
T ss_pred             ccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEE
Confidence            999999999999998883      34699999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHH
Q 039837          470 VSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM  538 (544)
Q Consensus       470 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~  538 (544)
                      ++.++...+..++++++...  ..+.++++++++++||.|++|..++++++||+|+|||++|++|++..
T Consensus       892 ~~~~~~~~~~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~  958 (1304)
T 2vsq_A          892 VADRHESGDASINAYLVNRT--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPD  958 (1304)
T ss_dssp             EEECCSSSCCEEEEEEECSS--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCC
T ss_pred             EEEecCCCCEEEEEEEeCCC--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcc
Confidence            99988877889999998654  56788999999999999999999999999999999999999886543

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.2e-73  Score=596.94  Aligned_cols=498  Identities=22%  Similarity=0.279  Sum_probs=408.5

Q ss_pred             CCCCCHHHHHHhhhhhcCCceEEEEcc--CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHH
Q 039837           33 PENVTLPDFVLQDAELYADKVAFVEAV--SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA  110 (544)
Q Consensus        33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~  110 (544)
                      ...+|+.++|.++|+++|+++|+++..  .++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||++
T Consensus         8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~   87 (590)
T 3kxw_A            8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY   87 (590)
T ss_dssp             HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence            356799999999999999999998642  247899999999999999999999999999999999999999999999999


Q ss_pred             hcCeeecCCCCCC---HHHHHHHHHhcCceEEEeccchHHHhhcCC-------CcEEEecccccccccCHHHHHHhhhhc
Q 039837          111 AGGVFSGANPTAH---ASELKKQVDAADAKLIVSYAPIYEKVKGLG-------LPIIVLGEERIESAINWSELIEAADKA  180 (544)
Q Consensus       111 ~G~~~v~l~~~~~---~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (544)
                      +|++++|+++.++   .+++.++++.+++++++++.+....+....       .....+.......... ..  ......
T Consensus        88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~  164 (590)
T 3kxw_A           88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALESIELNRS-SS--WQPTSI  164 (590)
T ss_dssp             TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGGGCCGGGG-GG--CCCCCC
T ss_pred             hCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeechhcccccc-cc--CCCCCC
Confidence            9999999999884   578999999999999999988776654422       0111111111000000 00  000011


Q ss_pred             CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc
Q 039837          181 GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR  260 (544)
Q Consensus       181 ~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  260 (544)
                      .......+.+||||||.||||++||+++.+.+.+....+  ++..++++++++|++|.+|+...++.++..|+++++.++
T Consensus       165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~  242 (590)
T 3kxw_A          165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF--HMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSP  242 (590)
T ss_dssp             CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT--TCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCH
T ss_pred             CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh--CCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCH
Confidence            222334678999999999999999999999998888777  788999999999999999986668899999999999886


Q ss_pred             c----CHHHHHHHHHHcCceeeecchHHHHHHhcCC---CCCccCccccccccEEEecCCCCHhHHHHHHhhcC-----C
Q 039837          261 F----ELRAFLDALITHEVTFAPIVPPIILSLVKDP---IVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFP-----G  328 (544)
Q Consensus       261 ~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~-----~  328 (544)
                      +    ++..+++.++++++|++.++|+++..+++..   .....++++++.  +++||+++++++.++|.+.|+     +
T Consensus       243 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~--~~~gg~~l~~~~~~~~~~~~~~~g~~~  320 (590)
T 3kxw_A          243 FSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVT--AFNGAEPVREETMEHFYQAFKEFGFRK  320 (590)
T ss_dssp             HHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCE--EEECSSCCCHHHHHHHHHHHGGGTCCG
T ss_pred             HHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHH--HhhCCCCCCHHHHHHHHHHHHHcCCCc
Confidence            5    7899999999999999999999999887642   234456778777  999999999999999999873     4


Q ss_pred             CeEEecccCccccccccccCCCC----------------------CCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCC
Q 039837          329 VQVQEAYGLTEHSCITLTYGDPA----------------------NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNT  386 (544)
Q Consensus       329 ~~i~~~yG~tE~~~~~~~~~~~~----------------------~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~  386 (544)
                      +++++.||+||++.+++......                      .........++|+|+++  ++|+|++++.+++.|+
T Consensus       321 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~  398 (590)
T 3kxw_A          321 EAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ  398 (590)
T ss_dssp             GGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB
T ss_pred             cccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC
Confidence            57999999999998766532110                      00122344678999998  8889977799999999


Q ss_pred             CceEEEecccccccccCChhhhhcccCC------CC--eeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHH
Q 039837          387 PGELCVRSQCVMQGYYNNEEETARTIDK------NG--WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAIL  458 (544)
Q Consensus       387 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l  458 (544)
                      .|||+|+||+++.|||++|+.|.+.|..      +|  ||+|||+|+++ +|.+++.||.||+||++|++|+|.+||++|
T Consensus       399 ~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l  477 (590)
T 3kxw_A          399 VGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSL  477 (590)
T ss_dssp             CEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHH
T ss_pred             EEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHH
Confidence            9999999999999999999999988853      24  99999999998 999999999999999999999999999999


Q ss_pred             -hcCCCcc--ceEEEeecCCCCCceeEEEEEeCCCC--CCCHHHHHHHHHhcccC-CCcee-EEEEe--ecCCCCCCccc
Q 039837          459 -LTHPSVE--DAAVVSLPDEEAGEIPAACVVMNPNA--KESEDDIMDFVASNVAT-YKKVR-VLHFV--DGIPKSHSGKI  529 (544)
Q Consensus       459 -~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~l~~~l~~-~~~p~-~~~~~--~~~P~t~~GKi  529 (544)
                       ..+|.|.  +++|++++++. ++.+++++++.++.  ..+.+++.++++++++. +++|. .++++  ++||+|++|||
T Consensus       478 ~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi  556 (590)
T 3kxw_A          478 MHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKI  556 (590)
T ss_dssp             HHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHH
T ss_pred             HhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHH
Confidence             7889998  79999888765 67788888887653  34567899999998885 77775 55555  79999999999


Q ss_pred             chHHHHHHHHHh
Q 039837          530 MRRILKDKMLEK  541 (544)
Q Consensus       530 ~r~~l~~~~~~~  541 (544)
                      +|++|++++.++
T Consensus       557 ~R~~L~~~~~~~  568 (590)
T 3kxw_A          557 RRNFCRKHLLDK  568 (590)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcC
Confidence            999999999754

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=5.9e-74  Score=596.82  Aligned_cols=492  Identities=17%  Similarity=0.153  Sum_probs=311.1

Q ss_pred             CCCCCCCHHHHHHhhhhhcCCceEEEEccC--------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHH
Q 039837           31 PVPENVTLPDFVLQDAELYADKVAFVEAVS--------GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYG  102 (544)
Q Consensus        31 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~--------~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~  102 (544)
                      .....+|+.++|.++|+++|+++|+++...        ++++||+||.++++++|++|.+.|+ +||+|+++++|+++++
T Consensus        15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~   93 (562)
T 3ite_A           15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF   93 (562)
T ss_dssp             ---CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH
T ss_pred             eecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH
Confidence            345678999999999999999999987521        2789999999999999999999999 7999999999999999


Q ss_pred             HHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhhhc--
Q 039837          103 IVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKA--  180 (544)
Q Consensus       103 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  180 (544)
                      +++|||+++|++++|+++.++.+++.+++++++++++|++++....+.......+...     ....+..........  
T Consensus        94 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  168 (562)
T 3ite_A           94 AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDT-----KNQSFIENLSTQDTSDI  168 (562)
T ss_dssp             HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEET-----TCHHHHHHHHHSCCSCC
T ss_pred             HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecc-----cchhhhhhccccccccc
Confidence            9999999999999999999999999999999999999998765443321111111111     011112222211111  


Q ss_pred             ----CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhcccc------CCcccCccEEEEecchhHHHHHHHHHHhhHh
Q 039837          181 ----GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSV------VPEMIGQVTTLGLIPFFHIYGITGICCATLR  250 (544)
Q Consensus       181 ----~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~  250 (544)
                          .......+.+||||||.||||++||+++.+.+......+      ...+...+++++..|++|..++ ..++.++.
T Consensus       169 ~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~  247 (562)
T 3ite_A          169 LNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI-GEMFLAWR  247 (562)
T ss_dssp             CCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHH-HHHHHHHH
T ss_pred             ccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhH-HHHHHHHh
Confidence                111124578999999999999999999988776544321      1146778899999999998876 56778999


Q ss_pred             ccceEEEcCccC-HHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCC
Q 039837          251 NKGKVVMMNRFE-LRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGV  329 (544)
Q Consensus       251 ~G~~~~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~  329 (544)
                      .|+++++.+... +..+.+.++++++|++.++|+++..+...    ..++++++.  +++||+++++++.++|.+.+ ++
T Consensus       248 ~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~--~~~gG~~l~~~~~~~~~~~~-~~  320 (562)
T 3ite_A          248 FGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVY--LGVGGEKMTPRTQQIWSSSD-RV  320 (562)
T ss_dssp             TTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCE--EEEESSCCCHHHHHHHTTCS-SC
T ss_pred             cccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEE--EEEecCCCCHHHHHHHhhCC-Cc
Confidence            999999987653 56788999999999999999999887543    345677777  99999999999999999876 89


Q ss_pred             eEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhh
Q 039837          330 QVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA  409 (544)
Q Consensus       330 ~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~  409 (544)
                      .+++.||+||++..++....    .......++|+|+++++++|+|++++.+++.|+.|||+|+|+.++.|||++|+.+.
T Consensus       321 ~~~~~YG~TE~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~  396 (562)
T 3ite_A          321 ALVNVYGPTEVTIGCSAGRI----LPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKG  396 (562)
T ss_dssp             EEEEEECCGGGCSCSEEEEC----CTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCS
T ss_pred             EEEEeeccchheeeeeeeee----cCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccc
Confidence            99999999999876655431    12345678999999999999998889999999999999999999999999999887


Q ss_pred             ccc-CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcC-CCccceEEEeecCCCCCceeEEEEEe
Q 039837          410 RTI-DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTH-PSVEDAAVVSLPDEEAGEIPAACVVM  487 (544)
Q Consensus       410 ~~~-~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~  487 (544)
                      ..+ ++++||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++ +.+.+++|++.+++..++..++.++.
T Consensus       397 ~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~  476 (562)
T 3ite_A          397 FCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVA  476 (562)
T ss_dssp             EEEETTEEEEEEEEEEEECTTSCEEEEEEC--------------------------------------------------
T ss_pred             cccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEe
Confidence            654 2234999999999999999999999999999999999999999999998 77888888888877766665555554


Q ss_pred             CCCCCC-------------CHHHHHHHHHhcccCCCceeEEEEeecCCCC-CCcccchHHHHHHHHH
Q 039837          488 NPNAKE-------------SEDDIMDFVASNVATYKKVRVLHFVDGIPKS-HSGKIMRRILKDKMLE  540 (544)
Q Consensus       488 ~~~~~~-------------~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t-~~GKi~r~~l~~~~~~  540 (544)
                      ..+...             ..++|+++++++|+.|++|..|+++++||+| ++||++|++|++++++
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~  543 (562)
T 3ite_A          477 SSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHT  543 (562)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             cccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhc
Confidence            433222             1348999999999999999999999999998 8999999999999864

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=5.2e-59  Score=475.98  Aligned_cols=397  Identities=19%  Similarity=0.280  Sum_probs=314.1

Q ss_pred             CCCCCCCCCCHHHHHHhhhhhcCCceEEEEcc-----CC--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcc
Q 039837           28 PAVPVPENVTLPDFVLQDAELYADKVAFVEAV-----SG--KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAE  100 (544)
Q Consensus        28 ~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~  100 (544)
                      ++......+||.++|.++|+++|+++|+++..     ++  +++||+||.++++++|++|++.|+ +||+|+++++|+++
T Consensus        16 ~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e   94 (480)
T 3t5a_A           16 PRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE   94 (480)
T ss_dssp             --------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH
T ss_pred             cccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH
Confidence            33444457899999999999999999998753     12  789999999999999999999996 99999999999999


Q ss_pred             HHHHHHHHHHhcCeeecCCC---CCCHHHHHHHHHhcCceEEEeccchHHHhhcCCC--------cEEEecccccccccC
Q 039837          101 YGIVALGIMAAGGVFSGANP---TAHASELKKQVDAADAKLIVSYAPIYEKVKGLGL--------PIIVLGEERIESAIN  169 (544)
Q Consensus       101 ~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  169 (544)
                      +++++|||+++|+++||+++   .++.+++.++++.++++++|++.+....+.....        .++.++.......  
T Consensus        95 ~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  172 (480)
T 3t5a_A           95 YVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAP--  172 (480)
T ss_dssp             HHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSCTTCC--
T ss_pred             HHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccccccc--
Confidence            99999999999999999999   7889999999999999999999887766654321        1222211110000  


Q ss_pred             HHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccC------ccEEEEecchhHHHHHHH
Q 039837          170 WSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIG------QVTTLGLIPFFHIYGITG  243 (544)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~p~~~~~g~~~  243 (544)
                       ..  ...........+.+.+||||||.||||++||+++.+.+.+....+  ....      .++++.++|++|.+|+..
T Consensus       173 -~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~~~~~~d~~l~~~pl~h~~g~~~  247 (480)
T 3t5a_A          173 -NG--YTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY--FADTDGIPPPNSALVSWLPFYHDMGLVI  247 (480)
T ss_dssp             ------CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH--CTTTTTCCCTTEEEEECCCTTSTTHHHH
T ss_pred             -cC--CCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh--ccccccCCCCCCeEEEeCCCcCccHHHH
Confidence             00  000111223344678999999999999999999999888776665  4455      899999999999999877


Q ss_pred             HHHhhHhccceEEEcCcc----CHHHHHHHHHHcCceeeecchHHHHHHhcC----CCCCccCccccccccEEEecCCCC
Q 039837          244 ICCATLRNKGKVVMMNRF----ELRAFLDALITHEVTFAPIVPPIILSLVKD----PIVDEFDLSKLQLRAVMTAAAPLA  315 (544)
Q Consensus       244 ~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----~~~~~~~~~~l~~~~v~~~G~~~~  315 (544)
                      .++.++..|+++++.++.    ++..+++.++++++| +..+|+++..++..    ......+++++|.  +++||++++
T Consensus       248 ~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~--i~~gG~~l~  324 (480)
T 3t5a_A          248 GICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILT--ILSGSERVQ  324 (480)
T ss_dssp             HTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCE--EEECCTTCC
T ss_pred             HHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhhe--eeecCCcCC
Confidence            889999999999998754    889999999999999 78899988887753    2334566788777  999999999


Q ss_pred             HhHHHHHHhhc-----CCCeEEecccCccccccccccCCCCCC--------------------CCCCCCCcccccCCCce
Q 039837          316 PDLLSSFEKKF-----PGVQVQEAYGLTEHSCITLTYGDPANP--------------------SAGSKKNSVGFILPNLE  370 (544)
Q Consensus       316 ~~~~~~~~~~~-----~~~~i~~~yG~tE~~~~~~~~~~~~~~--------------------~~~~~~~~~G~~~~~~~  370 (544)
                      +++.++|.+.|     +++.+++.||+||++..++........                    .......++|+|++ ++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~  403 (480)
T 3t5a_A          325 AATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PI  403 (480)
T ss_dssp             HHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SE
T ss_pred             HHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CE
Confidence            99999999988     456899999999999877654321110                    00234458999999 99


Q ss_pred             EEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccC-----------CCCeeecCceEEEcCCCcEEEEee
Q 039837          371 VKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTID-----------KNGWLHTGDIGYIDDDGDIFIVDR  437 (544)
Q Consensus       371 ~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~~g~~~~~GR  437 (544)
                      ++|+|++++++++.|+.|||+|+|++++.|||++|+.|.+.|.           .++||+|||+|+++ ||++++.||
T Consensus       404 ~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          404 VRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             EEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             EEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            9999977789999999999999999999999999999999885           56799999999996 999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=9.5e-52  Score=402.64  Aligned_cols=314  Identities=16%  Similarity=0.202  Sum_probs=265.2

Q ss_pred             CCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHH
Q 039837          185 SNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELR  264 (544)
Q Consensus       185 ~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~  264 (544)
                      ++++.|||||||.||||++||+++.+.+.+....+  ++.++|++++++|++|.+|+ ..++.++..|+++++.++.  .
T Consensus        39 ~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~--~  113 (358)
T 4gs5_A           39 REFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL--SLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT--A  113 (358)
T ss_dssp             SEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT--TCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC--S
T ss_pred             CEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh--CCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc--c
Confidence            34789999999999999999999999998888877  78899999999999999998 5677788889998887642  1


Q ss_pred             HHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccc
Q 039837          265 AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCIT  344 (544)
Q Consensus       265 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~  344 (544)
                      ..++.++++++|++.++|+++..|++... ...++++++.  +++||+++++++.+++.+.  ++++++.||+||++..+
T Consensus       114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~--v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~  188 (358)
T 4gs5_A          114 NPLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGK--VLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHV  188 (358)
T ss_dssp             CTTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCS--EEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEE
T ss_pred             cHHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceE--EEEcccCCCchheeccccc--CceEEecccccccccee
Confidence            23567889999999999999999998765 3446777777  9999999999999999874  89999999999998776


Q ss_pred             cccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceE
Q 039837          345 LTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIG  424 (544)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~  424 (544)
                      .....     .....+.+|.+.||+.+.+.+           .|||+++|+..                .++||+|||+|
T Consensus       189 ~~~~~-----~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGDlg  236 (358)
T 4gs5_A          189 ALKAL-----NGPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTNDLV  236 (358)
T ss_dssp             EEEEC-----SSTTCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEEEE
T ss_pred             ecccc-----cccccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCCcc
Confidence            65431     344567889999999988744           39999998643                57899999999


Q ss_pred             EEcCCCcEEEEeecCCceeecceeeChHHHHHHH---hcCCCccceEEE-eecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 039837          425 YIDDDGDIFIVDRIKELIKYKGFQVAPAELEAIL---LTHPSVEDAAVV-SLPDEEAGEIPAACVVMNPNAKESEDDIMD  500 (544)
Q Consensus       425 ~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l---~~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  500 (544)
                      ++|++| ++++||.||+||++|++|+|.+||++|   .+||.|.+++|+ +.+++..|+.++++++... .....++|++
T Consensus       237 ~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~-~~~~~~~l~~  314 (358)
T 4gs5_A          237 EIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM-PEALTERLTA  314 (358)
T ss_dssp             EECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC-CHHHHHHHHH
T ss_pred             ccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC-CCcCHHHHHH
Confidence            999888 677899999999999999999999877   457999998876 5677778888888877543 3445678999


Q ss_pred             HHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837          501 FVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM  542 (544)
Q Consensus       501 ~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~  542 (544)
                      +++++|+.|++|..++++++||+|++|||+|++|++++.+..
T Consensus       315 ~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~  356 (358)
T 4gs5_A          315 EIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS  356 (358)
T ss_dssp             HHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred             HHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence            999999999999999999999999999999999999886643

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=6.6e-48  Score=388.01  Aligned_cols=322  Identities=16%  Similarity=0.161  Sum_probs=266.0

Q ss_pred             CCCCCCCCCcCcceeeccHHHHHHHHHhhcccc-CCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHH
Q 039837          187 DDDVKQTDLWISKGVMLTHRNLVANLCSTLFSV-VPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRA  265 (544)
Q Consensus       187 ~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~  265 (544)
                      ...+||||||.||+|++||+++.+.+......+ ..++.++++++..+|+.|..+....++.++..|+++++.+..++..
T Consensus        90 ~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~  169 (436)
T 3qov_A           90 RIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAGNSKR  169 (436)
T ss_dssp             EEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSCCHHH
T ss_pred             EEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCCCHHH
Confidence            568899999999999999999977665553221 1267889999999999777776677888999999999988889999


Q ss_pred             HHHHHHHcCceeeecchHHHHHHhcCCCCCccC--ccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcccccc
Q 039837          266 FLDALITHEVTFAPIVPPIILSLVKDPIVDEFD--LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCI  343 (544)
Q Consensus       266 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~  343 (544)
                      +++.++++++|++.++|+++..|++.......+  +++++.  +++||+++++++.+++.+.| ++++++.||+||+++.
T Consensus       170 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~--i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~  246 (436)
T 3qov_A          170 QIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKT--LVIGAEPHTDEQRRKIERML-NVKAYNSFGMTEMNGP  246 (436)
T ss_dssp             HHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCE--EEEESSCCCHHHHHHHHHHH-TSEEEEEEEEGGGTEE
T ss_pred             HHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccE--EEEeCCcCCHHHHHHHHHHh-CccEEecCcchhhcCC
Confidence            999999999999999999999998764433333  566666  99999999999999999999 8999999999999544


Q ss_pred             ccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCce
Q 039837          344 TLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDI  423 (544)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~  423 (544)
                      ++....       ......|.+.+++.++|+|++++++++.|+.|||+|+|..            ...+ +.+||+|||+
T Consensus       247 ~~~~~~-------~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~------------~~~~-~~~~y~TGDl  306 (436)
T 3qov_A          247 GVAFEC-------QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD------------REMM-PLIRYRTRDL  306 (436)
T ss_dssp             EEEEEC-------TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS------------CCSS-CCCSEEEEEE
T ss_pred             eeEEec-------CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC------------cCCc-eEEEEEcCCE
Confidence            222211       1123367788899999999889999999999999999842            2233 6789999999


Q ss_pred             EEEcCCC------c---EEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCC
Q 039837          424 GYIDDDG------D---IFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES  494 (544)
Q Consensus       424 ~~~~~~g------~---~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  494 (544)
                      |+++++|      .   +++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++. +...+
T Consensus       307 ~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~  385 (436)
T 3qov_A          307 TRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTD  385 (436)
T ss_dssp             ECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCC
T ss_pred             EEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccccc
Confidence            9999998      5   699999999999999999999999999999999999999998877788999999988 55444


Q ss_pred             ----HHHHHHHHHhcccCC-CceeEEEEee--cCCCCCCcccchHH
Q 039837          495 ----EDDIMDFVASNVATY-KKVRVLHFVD--GIPKSHSGKIMRRI  533 (544)
Q Consensus       495 ----~~~l~~~l~~~l~~~-~~p~~~~~~~--~~P~t~~GKi~r~~  533 (544)
                          .+++.+++++.|+.+ ++|..+++++  +||+|+ ||++|..
T Consensus       386 ~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~  430 (436)
T 3qov_A          386 NYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK  430 (436)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred             chhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence                578999999999988 9999999998  999999 9999863

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=7.4e-47  Score=381.16  Aligned_cols=324  Identities=18%  Similarity=0.207  Sum_probs=265.8

Q ss_pred             CCCCCCCCCCcCcceeeccHHHHHHHHHhhcc---ccCCcccCccEEEEecch-hHHHHHHHHHHhhHhccceEEEcCcc
Q 039837          186 NDDDVKQTDLWISKGVMLTHRNLVANLCSTLF---SVVPEMIGQVTTLGLIPF-FHIYGITGICCATLRNKGKVVMMNRF  261 (544)
Q Consensus       186 ~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~  261 (544)
                      ....+||||||.||+|++||+++.+.......   .+  ++..+++++..+|+ +|..++ ...+.++..|+++++.+..
T Consensus        95 ~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~  171 (443)
T 2y4o_A           95 VRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA--GGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVVPMSGG  171 (443)
T ss_dssp             CEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT--TCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEECCCSC
T ss_pred             EEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc--CCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEEECCCC
Confidence            35678999999999999999998876554432   33  67889999999998 455555 5678889999999998888


Q ss_pred             CHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccC--ccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcc
Q 039837          262 ELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFD--LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE  339 (544)
Q Consensus       262 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE  339 (544)
                      ++..+++.|+++++|++.++|+++..|++.......+  +++++.  +++||+++++++.+++.+.| ++++++.||+||
T Consensus       172 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~--i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE  248 (443)
T 2y4o_A          172 QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKI--GIFGAEPWTQALRNEVETRV-GIDALDIYGLSE  248 (443)
T ss_dssp             CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCE--EEEESSCCCHHHHHHHHHHH-TCEEEEEEEETT
T ss_pred             CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceE--EEECCCcCCHHHHHHHHHHh-CcCEEeccCchh
Confidence            9999999999999999999999999998754322222  356666  99999999999999999999 899999999999


Q ss_pred             cccc-ccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCee
Q 039837          340 HSCI-TLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWL  418 (544)
Q Consensus       340 ~~~~-~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~  418 (544)
                      +++. +....    . . . ....+.+.+++.++|+|++++++++.|+.|||+|+|..            ...| +.+||
T Consensus       249 ~~g~~~~~~~----~-~-~-~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t------------~~~~-p~~~y  308 (443)
T 2y4o_A          249 VMGPGVACEC----V-E-T-KDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT------------KEAM-PVIRY  308 (443)
T ss_dssp             TTEEEEEEEC----T-T-T-CCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS------------CSSS-CCSSE
T ss_pred             hcCCeEEecc----C-C-C-CCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC------------cccC-hhhee
Confidence            7432 33221    1 1 1 11255677899999999878999999999999999732            2234 67899


Q ss_pred             ecCceEEEcCC-CcE-----EEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCC--C
Q 039837          419 HTGDIGYIDDD-GDI-----FIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP--N  490 (544)
Q Consensus       419 ~TGD~~~~~~~-g~~-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~--~  490 (544)
                      +|||+|+++++ |++     ++.||.||+||++|++|+|.+||++|.++|+|.++++++++++..++.+++++++.+  +
T Consensus       309 ~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~  388 (443)
T 2y4o_A          309 RTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAA  388 (443)
T ss_dssp             EEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHH
T ss_pred             ecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccc
Confidence            99999999999 986     899999999999999999999999999999999999988877666788899998865  2


Q ss_pred             ---CCCCHHHHHHHHHhcccCC-CceeEEEEe--ecCCCCCCcccchHHHH
Q 039837          491 ---AKESEDDIMDFVASNVATY-KKVRVLHFV--DGIPKSHSGKIMRRILK  535 (544)
Q Consensus       491 ---~~~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~~P~t~~GKi~r~~l~  535 (544)
                         ...+.+++.++++++|+.+ .+|..+.++  ++||+|++||++|...+
T Consensus       389 ~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~  439 (443)
T 2y4o_A          389 ASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR  439 (443)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred             ccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence               1234578999999999886 588888887  59999999999997543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=1.2e-46  Score=379.06  Aligned_cols=321  Identities=17%  Similarity=0.196  Sum_probs=265.2

Q ss_pred             CCCCCCCCCCcCcceeeccHHHHHHHHHhhcc---ccCCcccCccEEEEecch-hHHHHHHHHHHhhHhccceEEEcCcc
Q 039837          186 NDDDVKQTDLWISKGVMLTHRNLVANLCSTLF---SVVPEMIGQVTTLGLIPF-FHIYGITGICCATLRNKGKVVMMNRF  261 (544)
Q Consensus       186 ~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~  261 (544)
                      ....+||||||.||+|++||+++.........   .+  ++..+++++..+|+ +|..++ ...+.++..|+++++.+..
T Consensus        93 ~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~  169 (437)
T 2y27_A           93 SRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA--GARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVIPFGGG  169 (437)
T ss_dssp             CEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT--TCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEECCCSC
T ss_pred             EEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc--CCCCCCEEEEcccccccccch-HHHHHHHHcCCEEEeCCCC
Confidence            35678999999999999999998876654332   33  67889999999998 566665 5678889999999988888


Q ss_pred             CHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccC--ccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcc
Q 039837          262 ELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFD--LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE  339 (544)
Q Consensus       262 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE  339 (544)
                      ++..+++.++++++|++.++|+++..|++.......+  +++++.  +++||+++++++.+++.+.| ++++++.||+||
T Consensus       170 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~--i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE  246 (437)
T 2y27_A          170 QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRI--GIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSE  246 (437)
T ss_dssp             CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCE--EEEESSCCCHHHHHHHHHHH-TSEEEEEEEETT
T ss_pred             CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeE--EEEcCccCCHHHHHHHHHHH-CcCEEecCCchh
Confidence            9999999999999999999999999998754322222  356666  99999999999999999988 899999999999


Q ss_pred             cccc-ccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCee
Q 039837          340 HSCI-TLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWL  418 (544)
Q Consensus       340 ~~~~-~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~  418 (544)
                      +++. +.... .    .  .....+.+.+++.++|+|+++|++++.|+.|||+++|.            +...+ +.+||
T Consensus       247 ~~g~~~~~~~-~----~--~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~y  306 (437)
T 2y27_A          247 VMGPGVASEC-V----E--TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIRY  306 (437)
T ss_dssp             TTEEEEEECC-T----T--TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCSE
T ss_pred             hcCCeeEEec-C----C--CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhhee
Confidence            8432 33221 1    1  11125667899999999987899999999999999983            22334 67899


Q ss_pred             ecCceEEEcC-CCcE-----EEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCC
Q 039837          419 HTGDIGYIDD-DGDI-----FIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK  492 (544)
Q Consensus       419 ~TGD~~~~~~-~g~~-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  492 (544)
                      +|||+|++++ +|++     ++.||.||+||++|++|+|.+||++|.++|+|.++++++++++..++.+++++++.++..
T Consensus       307 ~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~  386 (437)
T 2y27_A          307 RTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA  386 (437)
T ss_dssp             EEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT
T ss_pred             ecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc
Confidence            9999999998 6985     899999999999999999999999999999999999988877767788999998876543


Q ss_pred             ---CCHHHHHHHHHhcccCC-CceeEEEEe--ecCCCCCCcccchHH
Q 039837          493 ---ESEDDIMDFVASNVATY-KKVRVLHFV--DGIPKSHSGKIMRRI  533 (544)
Q Consensus       493 ---~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~~P~t~~GKi~r~~  533 (544)
                         .+.+++.++++++|+.+ .+|..+.++  ++||+|+ ||++|..
T Consensus       387 ~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~  432 (437)
T 2y27_A          387 PDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV  432 (437)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred             chhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence               23478999999999987 689888888  5999999 9999964

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.96  E-value=5.8e-29  Score=244.19  Aligned_cols=234  Identities=17%  Similarity=0.131  Sum_probs=174.3

Q ss_pred             CCCCCCCCCCcCcceeeccHHHHHHHHHhhccccC-CcccCccEEEEecch-hHHHHHHHHHHhhHhccceEEEcCccCH
Q 039837          186 NDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV-PEMIGQVTTLGLIPF-FHIYGITGICCATLRNKGKVVMMNRFEL  263 (544)
Q Consensus       186 ~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~~~  263 (544)
                      ..+.+||||||.||+|++||+++.+...+....+. .++..+++++..+|+ +|..|+. ..+.++..|+ +++...+++
T Consensus        94 a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~-~v~~~~~dp  171 (369)
T 3hgu_A           94 PQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG-MFFSIDIDP  171 (369)
T ss_dssp             CEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-CEECCCCCH
T ss_pred             EEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-EEECccCCh
Confidence            45678999999999999999999998875543221 267889999999999 9988884 4455588888 666666677


Q ss_pred             H-----------------------HHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHH
Q 039837          264 R-----------------------AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLS  320 (544)
Q Consensus       264 ~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~  320 (544)
                      .                       .+++.++++++|++.++|+++..|++........+++++.  +++||+++++++.+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~--i~~gGe~l~~~~~~  249 (369)
T 3hgu_A          172 RWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQ--ITLGGTELNLDEIK  249 (369)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSE--EEEESSCCCHHHHH
T ss_pred             HHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeE--EEECCccCCHHHHH
Confidence            6                       7888999999999999999999998864322344566666  99999999999999


Q ss_pred             HHH-hhcCCCeEEecccCccccccccccCCCCCCCCCCCCCccccc------CCCceEEEEeCCCCCcCCCCCCceEEEe
Q 039837          321 SFE-KKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFI------LPNLEVKFINPETGKSLPSNTPGELCVR  393 (544)
Q Consensus       321 ~~~-~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~i~d~~~~~~~~~g~~Gel~v~  393 (544)
                      ++. +.||++++++.||+||+++++..+.      .    .++|++      .++++++|+|++++++++.|+.|||+|+
T Consensus       250 ~~~~~~~p~~~v~~~YG~TE~~~~~~~~~------~----~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt  319 (369)
T 3hgu_A          250 FIASEILPDCEFSASYGSTSALGVSRSLL------I----TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVT  319 (369)
T ss_dssp             HHHHHTCTTSEEEEEEEEGGGTEEEEECC------B----CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEE
T ss_pred             HHHHHhCCCcEEEcccCchhhhcceeccc------c----ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEE
Confidence            999 9999999999999999987664332      0    147888      9999999999779999999999999999


Q ss_pred             cccccccccCChhhhhcccCCCCeeecCceEEEcCC--C-------cEEEEeecCCceeecce
Q 039837          394 SQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDD--G-------DIFIVDRIKELIKYKGF  447 (544)
Q Consensus       394 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~~~~~GR~~d~i~~~G~  447 (544)
                      +....            .+  -.+|+|||++.+.+.  |       .+..++|.++..++.|.
T Consensus       320 ~l~~~------------~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          320 HLSPW------------AF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             EEETT------------EE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred             EcCcc------------cc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence            74311            11  235999999988543  2       25566777777777664

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.56  E-value=7.9e-15  Score=115.45  Aligned_cols=95  Identities=19%  Similarity=0.326  Sum_probs=74.0

Q ss_pred             eecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcccC-CCc
Q 039837          436 DRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE---DDIMDFVASNVAT-YKK  511 (544)
Q Consensus       436 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~-~~~  511 (544)
                      .|.||+|+++|.|++|.+||++|.+||+|.++++++.++...++.+.++++..++...+.   +++.+.+++.+.. +.+
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv   80 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV   80 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence            489999999999999999999999999999999999998888899999999887765544   3455555555542 234


Q ss_pred             eeEEEEe--ecCCCCCCcccch
Q 039837          512 VRVLHFV--DGIPKSHSGKIMR  531 (544)
Q Consensus       512 p~~~~~~--~~~P~t~~GKi~r  531 (544)
                      +..++++  ++||+| +||++|
T Consensus        81 ~~~v~~v~~~~lPrt-sGKi~R  101 (109)
T 3lax_A           81 TPRVKLVPKGALPKS-EGKAVR  101 (109)
T ss_dssp             CCEEEEECTTCSCCC----CCC
T ss_pred             ccceEEEcCCeecCC-CCCcch
Confidence            5456666  589998 699988

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.54  E-value=4.9e-07  Score=91.09  Aligned_cols=163  Identities=17%  Similarity=0.229  Sum_probs=99.9

Q ss_pred             ccccccccEEEecCCCCHhHHHHHHhhcCCCeEE-ecccCccccccccccCCCCCCCCCCCCCcccc-cCCC-ceEEEEe
Q 039837          299 LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQ-EAYGLTEHSCITLTYGDPANPSAGSKKNSVGF-ILPN-LEVKFIN  375 (544)
Q Consensus       299 ~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d  375 (544)
                      ++.+++-.++++|. + ......+++.+++.+++ ..|++||. .+.+...      ....+...+. .+++ .-.+.++
T Consensus       301 WPnlk~l~~~~tG~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~------p~~~p~~~~~~L~p~~~ffEFIP  371 (609)
T 4b2g_A          301 WPNTKYLDVIVTGA-M-AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNLN------PMSKPSEVSYTIMPNMAYFEFLP  371 (609)
T ss_dssp             STTCCEEEEECSGG-G-GGGHHHHHHHHTSCCEECCEEECSSC-EEEECSC------TTSCGGGCCEEECTTSCEEEEEE
T ss_pred             CCCCcEEEEEccCC-h-HHHHHHHHHHcCCCccccCcccccce-eeeeecC------CCCCcccCceeecCCcEEEEEEe
Confidence            56655433444443 2 44446666666677777 88999995 3333211      1111112222 2333 4455665


Q ss_pred             CCCC---------------CcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcC----CCcEEEEe
Q 039837          376 PETG---------------KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDD----DGDIFIVD  436 (544)
Q Consensus       376 ~~~~---------------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~G  436 (544)
                      .++.               ..+..|+.+||+++..+   |.|+              |++||++++..    ..++.+.|
T Consensus       372 ~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~g  434 (609)
T 4b2g_A          372 HEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFHNSAPQFHFVR  434 (609)
T ss_dssp             GGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEETTEEEEEEEE
T ss_pred             ccccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecCCCCcEEEEEE
Confidence            3321               24678999999998643   4443              99999999974    46799999


Q ss_pred             ecCCceeecceeeChHHHHHHHhc------CCC--ccceEEEeecCCCCCceeEEEEEeC
Q 039837          437 RIKELIKYKGFQVAPAELEAILLT------HPS--VEDAAVVSLPDEEAGEIPAACVVMN  488 (544)
Q Consensus       437 R~~d~i~~~G~~v~~~~iE~~l~~------~~~--v~~~~v~~~~~~~~~~~~~~~v~~~  488 (544)
                      |.++++.+.|+++.+.+||++|.+      ..+  |.+..+.... ...+..-+.++++.
T Consensus       435 R~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~-~~~p~Hyv~~wEl~  493 (609)
T 4b2g_A          435 RKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADT-KTIPGHYVIYWELL  493 (609)
T ss_dssp             ETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEEC-SSSSCEEEEEEEEE
T ss_pred             ecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCC-CCCCCcEEEEEEEe
Confidence            999999999999999999999974      222  5566654322 22223444445553

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.41  E-value=1.3e-06  Score=87.63  Aligned_cols=163  Identities=10%  Similarity=0.069  Sum_probs=101.1

Q ss_pred             ccccccccEEEecCCCCHhHHHHHHhhcCCCeEE-ecccCccccccccccCCCCCCCCCCCCCccc-ccCCC-ceEEEEe
Q 039837          299 LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQ-EAYGLTEHSCITLTYGDPANPSAGSKKNSVG-FILPN-LEVKFIN  375 (544)
Q Consensus       299 ~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~-~~~~i~d  375 (544)
                      ++.+++-.++++|..  .....++++.+++.++. ..|++||. .+.+...      ....++..+ ..+|+ .-.+.++
T Consensus       301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~------p~~~~~~~~~~L~p~~~ffEFiP  371 (581)
T 4epl_A          301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVT------PRLSPEEATFAVIPNLGYFEFLP  371 (581)
T ss_dssp             CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCC------TTSCTTTCCEEECTTSCEEEEEE
T ss_pred             CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccce-eeeeecC------CCCCccccceeecCCcEEEEEEe
Confidence            566655335555533  34446666666677877 88999995 3333211      111111122 23333 3345554


Q ss_pred             CCCC----------CcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCC----CcEEEEeecCCc
Q 039837          376 PETG----------KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDD----GDIFIVDRIKEL  441 (544)
Q Consensus       376 ~~~~----------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~----g~~~~~GR~~d~  441 (544)
                      .++.          ..+..|+.+||++++.+   |.|+              |++||++++..-    .++.+.||.+++
T Consensus       372 ~~~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~  434 (581)
T 4epl_A          372 VSETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLI  434 (581)
T ss_dssp             C-------CCCEEGGGCCTTCEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCC
T ss_pred             cccccCCCCceeeHHHcCCCCeEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCe
Confidence            2221          35678999999999753   3332              999999998642    579999999999


Q ss_pred             eeecceeeChHHHHHHHhcC--------CCccceEEEeecCCCCCceeEEEEEeC
Q 039837          442 IKYKGFQVAPAELEAILLTH--------PSVEDAAVVSLPDEEAGEIPAACVVMN  488 (544)
Q Consensus       442 i~~~G~~v~~~~iE~~l~~~--------~~v~~~~v~~~~~~~~~~~~~~~v~~~  488 (544)
                      +.+.|+++...+||++|.+.        -.|.+..+.... ...+..-+.++++.
T Consensus       435 l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~-~~~p~hyv~~wE~~  488 (581)
T 4epl_A          435 LSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDV-STDPGHYAIFWEIS  488 (581)
T ss_dssp             BCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEEC-SSSSCEEEEEEEES
T ss_pred             EEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCC-CCCCCcEEEEEeec
Confidence            99999999999999998752        246677665532 22223444555654

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.38  E-value=9.3e-07  Score=88.97  Aligned_cols=137  Identities=15%  Similarity=0.227  Sum_probs=89.7

Q ss_pred             ccccccccEEEecCCCCHhHHHHHHhhcCCCeEE-ecccCccccccccccCCCCCCCCCCCCCcccc-cCCC-ceEEEEe
Q 039837          299 LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQ-EAYGLTEHSCITLTYGDPANPSAGSKKNSVGF-ILPN-LEVKFIN  375 (544)
Q Consensus       299 ~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d  375 (544)
                      ++.+++-.+++.|..  ......+++.+++.+++ ..|++||. .+.+...      ....+...+. .+++ .-.+.++
T Consensus       296 WPnl~~l~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~------p~~~~~~~~~~L~~~~~ffEFip  366 (581)
T 4eql_A          296 WPNTKYIETVVTGSM--GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLD------PLCKPEDVSYTFMPNMSYFEFIP  366 (581)
T ss_dssp             STTCCEEEEECSGGG--GGGHHHHHHHHTTCCEECCEEECSSC-EEEECSC------TTSCGGGCCEEECTTSSEEEEEE
T ss_pred             CCCCcEEEEEcCCCh--HHHHHHHHHHcCCCccccCccccccc-eeeeccC------CCCCcccCceeecCCcEEEEEEe
Confidence            455454334444442  44556666666678877 88999994 3332211      1111112232 2333 4456665


Q ss_pred             CCCC--------CcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcC----CCcEEEEeecCCcee
Q 039837          376 PETG--------KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDD----DGDIFIVDRIKELIK  443 (544)
Q Consensus       376 ~~~~--------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~d~i~  443 (544)
                      .++.        ..+..|+.+||++++.+   |.|+              |++||++++..    ..++.|.||.++++.
T Consensus       367 ~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~  429 (581)
T 4eql_A          367 MDGGDKNDVVDLEDVKLGCTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLS  429 (581)
T ss_dssp             CSTTCCSSCEEGGGCCTTCEEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEEC
T ss_pred             ccccCCCcEeCHHHcCCCceEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEEE
Confidence            3221        24568899999999753   3333              99999999975    367999999999999


Q ss_pred             ecceeeChHHHHHHHhcC
Q 039837          444 YKGFQVAPAELEAILLTH  461 (544)
Q Consensus       444 ~~G~~v~~~~iE~~l~~~  461 (544)
                      +.|+++...+||++|.+.
T Consensus       430 ~~Gekl~~~~v~~al~~a  447 (581)
T 4eql_A          430 IDSDKTNEEDLFKAVSQA  447 (581)
T ss_dssp             SSSCCEEHHHHHHHHHHC
T ss_pred             eeeeECCHHHHHHHHHHH
Confidence            999999999999999854

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=91.76  E-value=0.93  Score=44.40  Aligned_cols=86  Identities=16%  Similarity=0.114  Sum_probs=69.6

Q ss_pred             eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--ccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEE
Q 039837           63 AYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNV--AEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV  140 (544)
Q Consensus        63 ~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii  140 (544)
                      .+|.+.+...+..++..+...|+.++|++...++-+  ...+...++++..|+..++++.. +.+.+...+++.++.+++
T Consensus       109 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~  187 (437)
T 2y27_A          109 GYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDIIM  187 (437)
T ss_dssp             EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSEEE
T ss_pred             ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCEEE
Confidence            579999998888888888888999999999988853  33344567888999999877654 788899999999999999


Q ss_pred             eccchHHHh
Q 039837          141 SYAPIYEKV  149 (544)
Q Consensus       141 ~~~~~~~~~  149 (544)
                      ..+..+..+
T Consensus       188 ~~Ps~~~~l  196 (437)
T 2y27_A          188 VTPSYMLSI  196 (437)
T ss_dssp             ECHHHHHHH
T ss_pred             ECHHHHHHH
Confidence            887765544

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=91.47  E-value=1.1  Score=44.09  Aligned_cols=86  Identities=13%  Similarity=0.097  Sum_probs=69.8

Q ss_pred             eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc--cHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEE
Q 039837           63 AYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVA--EYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV  140 (544)
Q Consensus        63 ~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii  140 (544)
                      .+|.+.+...+..++..+...|+.++|++...++-+.  ..+...++++..|+..++++.. +.+.+...+++.++.+++
T Consensus       111 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~  189 (443)
T 2y4o_A          111 GYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKIIL  189 (443)
T ss_dssp             EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEEE
T ss_pred             ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEEE
Confidence            5799999988888888888889999999999888542  3345568888999999887664 788889999999999999


Q ss_pred             eccchHHHh
Q 039837          141 SYAPIYEKV  149 (544)
Q Consensus       141 ~~~~~~~~~  149 (544)
                      ..+..+..+
T Consensus       190 ~~Ps~~~~l  198 (443)
T 2y4o_A          190 VTPSYMLNL  198 (443)
T ss_dssp             ECHHHHHHH
T ss_pred             ECHHHHHHH
Confidence            877765544

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=91.21  E-value=1.2  Score=43.64  Aligned_cols=86  Identities=12%  Similarity=-0.001  Sum_probs=70.1

Q ss_pred             eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--ccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEE
Q 039837           63 AYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNV--AEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV  140 (544)
Q Consensus        63 ~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii  140 (544)
                      .+|.+.+...+..++..+...|+.++|++....+-+  ...+..+++++..|+..++.+.. .++.+...+++.++.+++
T Consensus       105 ~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~~  183 (436)
T 3qov_A          105 VHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTALH  183 (436)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEEE
T ss_pred             EECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEEE
Confidence            589999999998888888888999999999988753  33444678888999998887654 678889999999999999


Q ss_pred             eccchHHHh
Q 039837          141 SYAPIYEKV  149 (544)
Q Consensus       141 ~~~~~~~~~  149 (544)
                      ..+..+..+
T Consensus       184 ~~P~~~~~l  192 (436)
T 3qov_A          184 AIPSYAIRL  192 (436)
T ss_dssp             CCHHHHHHH
T ss_pred             ECHHHHHHH
Confidence            877765544

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=81.81  E-value=13  Score=36.90  Aligned_cols=97  Identities=18%  Similarity=0.136  Sum_probs=71.1

Q ss_pred             cCCceEEEEccCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc-cHHHHHHHHHHhcCeeecCCC
Q 039837           49 YADKVAFVEAVSG-------KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVA-EYGIVALGIMAAGGVFSGANP  120 (544)
Q Consensus        49 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l~~  120 (544)
                      .|+.+|++.-.+|       -.+|.+.+...+..+..   ..++.++|++...+|-.. ..+..+++.+..|+..+..+ 
T Consensus       161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-  236 (501)
T 3ipl_A          161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-  236 (501)
T ss_dssp             CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred             CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence            5677776532122       35899998877665544   358899999998888543 23344677888999988775 


Q ss_pred             CCCHHHHHHHHHhcCceEEEeccchHHHh
Q 039837          121 TAHASELKKQVDAADAKLIVSYAPIYEKV  149 (544)
Q Consensus       121 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~  149 (544)
                      ..+++.+...+++.++.++...+..+..+
T Consensus       237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  265 (501)
T 3ipl_A          237 KFNAEQILTMIKNERITHISLVPQTLNWL  265 (501)
T ss_dssp             SCCHHHHHHHHHHSCCCEEEECHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCcEEEchHHHHHHH
Confidence            46788999999999999999887766554

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=81.41  E-value=5.2  Score=37.89  Aligned_cols=86  Identities=12%  Similarity=0.136  Sum_probs=62.6

Q ss_pred             eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcc--HHHHHHHHHHhcCeeecCCCCCCHH---------------
Q 039837           63 AYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAE--YGIVALGIMAAGGVFSGANPTAHAS---------------  125 (544)
Q Consensus        63 ~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~---------------  125 (544)
                      .+|.+.+...+..++..+...|+.++|++...++-+..  -+...++++..|+.+++.+  .++.               
T Consensus       110 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~~  187 (369)
T 3hgu_A          110 VAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATVR  187 (369)
T ss_dssp             EECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHHH
T ss_pred             EECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhhH
Confidence            47999998888877777777899999999999886332  2334455588898655543  3444               


Q ss_pred             --------HHHHHHHhcCceEEEeccchHHHhh
Q 039837          126 --------ELKKQVDAADAKLIVSYAPIYEKVK  150 (544)
Q Consensus       126 --------~l~~~l~~~~~~~ii~~~~~~~~~~  150 (544)
                              .+...+++.++.+++..+..+..+.
T Consensus       188 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~  220 (369)
T 3hgu_A          188 KYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL  220 (369)
T ss_dssp             HHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence                    6666889999999998877665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	544
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	1e-111
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	1e-108
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	1e-105
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	4e-92
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	8e-88
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	1e-82
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	2e-82

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  339 bits (869), Expect = e-111
 Identities = 170/549 (30%), Positives = 273/549 (49%), Gaps = 33/549 (6%)

Query: 20  EHIFRSRHPAVPVPENVTLPDFVLQDAELYA---DKVAFVEAVSGKAYTYAQVARDTRGF 76
           ++I +   P  P+ +  T  + + +  + YA     +AF +A      TYA+    +   
Sbjct: 2   KNIKKGPAPFYPLEDG-TAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRL 60

Query: 77  AKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADA 136
           A+A++  GL     ++V   N  ++ +  LG +  G   + AN   +  EL   ++ +  
Sbjct: 61  AEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQP 120

Query: 137 KLIV-------SYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNN---FSN 186
            ++            + +K+  +   II+  +   +   +    + +    G N   F  
Sbjct: 121 TVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVP 180

Query: 187 DDDVKQTDLWI----------SKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFF 236
           +   +   + +           KGV L HR            +    I   T +  +  F
Sbjct: 181 ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPF 240

Query: 237 HIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDE 296
           H           L    +VV+M RFE   FL +L  +++  A +VP +     K  ++D+
Sbjct: 241 HHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK 300

Query: 297 FDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAG 356
           +DLS L    + +  APL+ ++  +  K+F    +++ YGLTE +   L       P   
Sbjct: 301 YDLSNLHE--IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI-----TPEGD 353

Query: 357 SKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNG 416
            K  +VG ++P  E K ++ +TGK+L  N  GELCVR   +M GY NN E T   IDK+G
Sbjct: 354 DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDG 413

Query: 417 WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEE 476
           WLH+GDI Y D+D   FIVDR+K LIKYKG+QVAPAELE+ILL HP++ DA V  LPD++
Sbjct: 414 WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDD 473

Query: 477 AGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHSGKIMRRILK 535
           AGE+PAA VV+      +E +I+D+VAS V T KK+R  + FVD +PK  +GK+  R ++
Sbjct: 474 AGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 533

Query: 536 DKMLEKMRK 544
           + +L K +K
Sbjct: 534 E-ILIKAKK 541

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  332 bits (851), Expect = e-108
 Identities = 127/529 (24%), Positives = 233/529 (44%), Gaps = 24/529 (4%)

Query: 28  PAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKA--YTYAQVARDTRGFAKALRSLGL 85
           P+  + E + L DF+ + A L+  K       +G+    TYA+V +  R     LR+LG+
Sbjct: 3   PSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGV 62

Query: 86  RKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPI 145
             G  V  +  N   +      +   G V   ANP     E+   ++ A+ K+++    +
Sbjct: 63  GVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNL 122

Query: 146 YEKVKGLGLPI------IVLGEERIESAINWSELIEAADKAGNNFSNDDDV---KQTDLW 196
              V+ +   +      +V+ E+  E  + + E +                         
Sbjct: 123 LPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTG 182

Query: 197 ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVV 256
           + KGV+ +HR LV +  +        +  +   L ++P FH+        ATL    +V+
Sbjct: 183 LPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVL 242

Query: 257 MMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAP 316
              R +  + ++      VTF   VP + L+L          L  L  R ++   +    
Sbjct: 243 PGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTL--RRLVVGGSAAPR 300

Query: 317 DLLSSFEKKFPGVQVQEAYGLTEHSCITLTY------GDPANPSAGSKKNSVGFILPNLE 370
            L++ FE+   GV+V++ YGLTE S + +           +     + K   G  +P + 
Sbjct: 301 SLIARFER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVR 358

Query: 371 VKFINPETGKSLPSN--TPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDD 428
           ++  + E G+ +P +    GE+ ++   +  GYY NEE T   +  +G+  TGDI   D+
Sbjct: 359 LRVADEE-GRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 417

Query: 429 DGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMN 488
           +G + I DR+K+LIK  G  ++  +LE  L+ HP V++AAVV++P  +  E P A VV  
Sbjct: 418 EGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR 477

Query: 489 PNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
                 E+     + +  A ++      F + IP++ +GK ++R L+++
Sbjct: 478 GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQ 526

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  327 bits (839), Expect = e-105
 Identities = 110/539 (20%), Positives = 202/539 (37%), Gaps = 55/539 (10%)

Query: 46  AELYADKVAFV----EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEY 101
            +   D+ A +    +    K  +Y ++ RD   FA  L  LG++KG VV + +P V E 
Sbjct: 82  LQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA 141

Query: 102 GIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVS-------------YAPIYEK 148
            +  L     G V S          +   +  + ++L+++                + + 
Sbjct: 142 AVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDA 201

Query: 149 VKGLGLPII--VLGEERIESAINWSE----LIEAADKAGNNFSNDDDVKQTDLWI----- 197
           +K   +  +  V+  +R  S I+W E          +  +     + +   D        
Sbjct: 202 LKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTS 261

Query: 198 -----SKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNK 252
                 KGV+ T    +    +T   V     G +          + G + +    L   
Sbjct: 262 GSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY-WCTADVGWVTGHSYLLYGPLACG 320

Query: 253 GKVVMM----NRFELRAFLDALITHEVTFAPIVPPIILSLVK--DPIVDEFDLSKLQLRA 306
              +M     N          +  H+V      P  I +L+   D  ++  D S L  R 
Sbjct: 321 ATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL--RI 378

Query: 307 VMTAAAPLAPDLLSSFEKKF--PGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGF 364
           + +   P+ P+    + KK       V + +  TE     +T   P   +   K  S   
Sbjct: 379 LGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT---PLPGAIELKAGSATR 435

Query: 365 ILPNLEVKFINPETGKSLPSNTPGELCVRSQC--VMQGYYNNEEETARTIDK--NGWLHT 420
               ++   ++ E G      T G L +        +  + + E   +T          +
Sbjct: 436 PFFGVQPALVDNE-GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFS 494

Query: 421 GDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEI 480
           GD    D+DG  +I  R+ +++   G ++  AE+E+ L+ HP + +AAVV +P    G+ 
Sbjct: 495 GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQA 554

Query: 481 PAACVVMNPNAKESED---DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
             A V +N   + S +   ++ ++V   +       VLH+ D +PK+ SGKIMRRIL+ 
Sbjct: 555 IYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 613

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  292 bits (749), Expect = 4e-92
 Identities = 109/545 (20%), Positives = 202/545 (37%), Gaps = 57/545 (10%)

Query: 46  AELYADKVAFV----EAVSGKAYTYAQVARDTRGFAKALR-SLGLRKGQVVIVVLPNVAE 100
           A    +K A +    E   G + TY ++  +    A+ L  S+G+RKG  V V +P V E
Sbjct: 69  ALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE 128

Query: 101 YGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLG 160
             I  L I   G + S       ++ L+ +++  D+K++++        K +    IV  
Sbjct: 129 AIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDD 188

Query: 161 EERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWIS---------------------- 198
             R    +    +    +     F    D+                              
Sbjct: 189 ALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTS 248

Query: 199 ------KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNK 252
                 KGV  +    +     T      +   +           I G T +    L   
Sbjct: 249 GSTGAPKGVQHSTAGYLLGALLT-MRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYG 307

Query: 253 GKVVMMNRFELR----AFLDALITHEVTFAPIVPPIILSLVK--DPIVDEFDLSKLQLRA 306
              ++            + D +  H+VT   + P  +  L +  D  ++   L  L  R 
Sbjct: 308 CATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSL--RC 365

Query: 307 VMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFIL 366
           + +   P+A ++   + +K    ++       +    +      A      K  S  F  
Sbjct: 366 LGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPF 425

Query: 367 PNLEVKFINPETGKSL-PSNTPGELCVRS--QCVMQGYYNNEEETARTI--DKNGWLHTG 421
             ++   ++P TG+ L  S+  G L V++      +  + N +    T      G+  TG
Sbjct: 426 FGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTG 485

Query: 422 DIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIP 481
           D    D DG I+I+ R+ +++   G +++ AE+EA ++  P V + AVV   D+  G+  
Sbjct: 486 DGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAV 545

Query: 482 AACVVMNPNAKESE----------DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMR 531
           AA VV+   +  S             ++  V  ++  +   +++  VD +PK+ SGKIMR
Sbjct: 546 AAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMR 605

Query: 532 RILKD 536
           RIL+ 
Sbjct: 606 RILRK 610

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  278 bits (711), Expect = 8e-88
 Identities = 88/528 (16%), Positives = 186/528 (35%), Gaps = 26/528 (4%)

Query: 18  DEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFA 77
           +E+++F   +     P + T+     +      + VA V     +  TY ++       A
Sbjct: 5   EEQYLFAVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLA 62

Query: 78  KALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAK 137
           +     G+ K  +V +++    +  I  L ++ AGG +   +       ++  +D + A+
Sbjct: 63  RIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQAR 122

Query: 138 LIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWI 197
           ++++   +   +  +     V   E     I     +    K+ +          T    
Sbjct: 123 MLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPK 182

Query: 198 SKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVM 257
             G ML H+    +     F     +  +              +  +  A L      ++
Sbjct: 183 --GTMLEHKG--ISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYII 238

Query: 258 MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPD 317
           +         D +   +      +  I L       +D   +    ++ ++TA +  +P 
Sbjct: 239 LKDT----INDFVKFEQYINQKEITVITLPPTYVVHLDPERIL--SIQTLITAGSATSPS 292

Query: 318 LLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPE 377
           L++ +++K   +        T  +         A          +G  + N ++     E
Sbjct: 293 LVNKWKEKVTYINAYGPTETTICATTW-----VATKETIGHSVPIGAPIQNTQIYI-VDE 346

Query: 378 TGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKN------GWLHTGDIGYIDDDGD 431
             +       GELC+  + + +GY+   E T++    N          TGD      DG+
Sbjct: 347 NLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGN 406

Query: 432 IFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA 491
           I  + RI   +K +G +V   E+E+ILL H  + + AV    D +      A  V   + 
Sbjct: 407 IEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI 466

Query: 492 KESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML 539
               + +  F +  + TY        +D +P + +GKI R+ L +  L
Sbjct: 467 --PLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDL 512

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  264 bits (674), Expect = 1e-82
 Identities = 108/514 (21%), Positives = 188/514 (36%), Gaps = 26/514 (5%)

Query: 37  TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
           T+ + + + A    D  A      G   T+A++       A  L + GLR  Q V VV P
Sbjct: 3   TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62

Query: 97  NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPI 156
           N A+  I  L +   G V +  NP   ++EL + +   +    V          G  +  
Sbjct: 63  NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI-------AVGRQVAD 115

Query: 157 IVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTD-----------LWISKGVMLTH 205
            +         I   +L+   +        +D  ++               + K  ++  
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQ 175

Query: 206 RNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRA 265
           R   + +      V          LGL+P +H+ G   +  A L   G  V++  F    
Sbjct: 176 RAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVD 235

Query: 266 FLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKK 325
            L  +   +VT     P  + +L          L    LR V  A A +   +L +  + 
Sbjct: 236 ALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQH 295

Query: 326 FPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSN 385
               +    YG TE                   + + GF      V+             
Sbjct: 296 L-PGEKVNIYGTTEAMNSLYMRQPKTGT-----EMAPGFFSEVRIVRIGGGVDEIVANGE 349

Query: 386 TPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYK 445
               +   S     GY N  + TA  + ++GW  T D+     +G + I+ R+ ++I   
Sbjct: 350 EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISG 408

Query: 446 GFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV-AS 504
           G  + P+E+E +L T P V +  V+ L D+  G+   ACVV       S D +  F  +S
Sbjct: 409 GENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSS 468

Query: 505 NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
            +A +K+ +    +D +PK+   K++RR L  ++
Sbjct: 469 ELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  264 bits (676), Expect = 2e-82
 Identities = 111/533 (20%), Positives = 205/533 (38%), Gaps = 24/533 (4%)

Query: 23  FRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRS 82
               +         T  D +   A  Y D++A         ++Y ++       A   + 
Sbjct: 12  LAETYRKNGCWAGETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQK 69

Query: 83  LGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSY 142
           LG+++   V+V LPN+ E+  V   +   G +   A P+  +SE+    + A+A   +  
Sbjct: 70  LGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIP 129

Query: 143 APIYEKVKGLGLPIIVLGEERIESAI--NWSELIEAADKAGNNFSNDDDVKQTDLWI--- 197
                         +      +++ I    +E     +          +VK +D+     
Sbjct: 130 DAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQL 189

Query: 198 -------SKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLR 250
                  SK +  TH + + +       V       V    L    +    +      L 
Sbjct: 190 SGGSTGLSKLIPRTHDDYIYS-LKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248

Query: 251 NKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTA 310
             G+VV+            +   +VT   +VPP+ +  +        DLS LQ+  +   
Sbjct: 249 AGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQV--LQVG 306

Query: 311 AAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLE 370
            A  + +     +  F G  +Q+ +G+ E         DP      +     G  +   +
Sbjct: 307 GAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLDDPEEIIVNT----QGKPMSPYD 361

Query: 371 VKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDG 430
              +  +  + +     G L  R    ++GYY  EE  A +  ++G+  TGDI  +  DG
Sbjct: 362 ESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDG 421

Query: 431 DIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN 490
            I +  R K+ I   G +VA  E+E  LL HP+V DAA+VS+PD+  GE     ++    
Sbjct: 422 YIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE 481

Query: 491 AKESEDDIMDFVAS-NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 542
           A     ++  F+    +A YK    + FV+  P++  GK+ ++ L++ + EK+
Sbjct: 482 A-PKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	544
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.2e-75  Score=606.85  Aligned_cols=509  Identities=32%  Similarity=0.510  Sum_probs=420.1

Q ss_pred             ecCCCCCCCCCCCCHHHHHHhhhhhc---CCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcc
Q 039837           24 RSRHPAVPVPENVTLPDFVLQDAELY---ADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAE  100 (544)
Q Consensus        24 ~~~~~~~~~~~~~~l~~~l~~~a~~~---p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~  100 (544)
                      ..+.|..|.+ ..|+.+.|.+++++|   |+++|+++...++++||+||.+++.++|++|++.|+++||+|+++++|+++
T Consensus         6 ~~p~p~~p~~-~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e   84 (541)
T d1lcia_           6 KGPAPFYPLE-DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ   84 (541)
T ss_dssp             ECCCCSSCCC-SSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSS
T ss_pred             cCCCCCCCCC-CCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHH
Confidence            3445555555 348999999999988   888899987767899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC----C-CcEE-Eeccc-ccccccCHHHH
Q 039837          101 YGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----G-LPII-VLGEE-RIESAINWSEL  173 (544)
Q Consensus       101 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~-~~~~-~~~~~-~~~~~~~~~~~  173 (544)
                      ++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+.+.    . ...+ +++.. .......+...
T Consensus        85 ~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (541)
T d1lcia_          85 FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTF  164 (541)
T ss_dssp             THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBEEHHHH
T ss_pred             HHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccchhhhh
Confidence            9999999999999999999999999999999999999999999877665432    1 2333 32221 12223333333


Q ss_pred             HHhhhhcC-------------CCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccC-CcccCccEEEEecchhHHH
Q 039837          174 IEAADKAG-------------NNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV-PEMIGQVTTLGLIPFFHIY  239 (544)
Q Consensus       174 ~~~~~~~~-------------~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~  239 (544)
                      ........             ....+.+.+||||||.||||++||++++....+...... ......++++.++|++|.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  244 (541)
T d1lcia_         165 VTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGF  244 (541)
T ss_dssp             HHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHH
T ss_pred             hhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccccc
Confidence            33211110             011124578999999999999999999887766554432 2567889999999999998


Q ss_pred             HHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHH
Q 039837          240 GITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLL  319 (544)
Q Consensus       240 g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~  319 (544)
                      ++ ...+..+..++..+.....+.......+..+++|.+..+|.++..+++.......++++++.  +++||+++++++.
T Consensus       245 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~--v~~gG~~~~~~~~  321 (541)
T d1lcia_         245 GM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHE--IASGGAPLSKEVG  321 (541)
T ss_dssp             HH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCE--EECTTCCCCHHHH
T ss_pred             cc-cccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccccceE--EEecccccccccc
Confidence            87 55667777888888888888999999999999999999999999999888777777788777  9999999999999


Q ss_pred             HHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccc
Q 039837          320 SSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQ  399 (544)
Q Consensus       320 ~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~  399 (544)
                      +++.+.++...+++.||+||++..++...     ......+++|+|+|+++++|+|++++++++.|+.|||+|+|++++.
T Consensus       322 ~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-----~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~  396 (541)
T d1lcia_         322 EAVAKRFHLPGIRQGYGLTETTSAILITP-----EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMS  396 (541)
T ss_dssp             HHHHHHTTCSCCBCEECCGGGSSCSEECC-----CC---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCS
T ss_pred             cccccccCCceeeecCCccccCceEEecC-----cccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCC
Confidence            99999996677999999999998777653     2455678899999999999999889999999999999999999999


Q ss_pred             cccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCc
Q 039837          400 GYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGE  479 (544)
Q Consensus       400 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~  479 (544)
                      ||+++++.+...+..++||+|||+|+++++|.+++.||.+|+||++|++|+|.+||++|.++|+|.+++|++++++..|+
T Consensus       397 gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~  476 (541)
T d1lcia_         397 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGE  476 (541)
T ss_dssp             EETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEE
T ss_pred             eeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCE
Confidence            99999999988888899999999999999999999999999999999999999999999999999999999999888899


Q ss_pred             eeEEEEEeCCCCCCCHHHHHHHHHhcccCCC-ceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          480 IPAACVVMNPNAKESEDDIMDFVASNVATYK-KVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       480 ~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~-~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      .+++++++.++...+.++++++++++|.+++ +|..++++++||+|++|||+|++|++++.++
T Consensus       477 ~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  539 (541)
T d1lcia_         477 LPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKA  539 (541)
T ss_dssp             EEEEEEEECTTCCCCHHHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHH
T ss_pred             EEEEEEEECCCCCCCHHHHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHHh
Confidence            9999999998888899999999999998765 7999999999999999999999999999764

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.9e-75  Score=611.50  Aligned_cols=500  Identities=21%  Similarity=0.293  Sum_probs=414.4

Q ss_pred             CCCCHHHH-HHhhhhhcCCceEEEEcc----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHH
Q 039837           34 ENVTLPDF-VLQDAELYADKVAFVEAV----SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGI  108 (544)
Q Consensus        34 ~~~~l~~~-l~~~a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~  108 (544)
                      ..+|+.+. |+++++.+||++|+++..    +.+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus        69 ~~~N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~  148 (643)
T d1pg4a_          69 GTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC  148 (643)
T ss_dssp             CEECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHH
Confidence            34577665 447888999999998532    2267999999999999999999999999999999999999999999999


Q ss_pred             HHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHH-------------Hhhc---CCCc-EEEeccccc------c
Q 039837          109 MAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYE-------------KVKG---LGLP-IIVLGEERI------E  165 (544)
Q Consensus       109 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-------------~~~~---~~~~-~~~~~~~~~------~  165 (544)
                      +++|++++|+++.++.+++.+++++++++++|+++....             .+..   ..+. ++++.....      .
T Consensus       149 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~  228 (643)
T d1pg4a_         149 ARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEG  228 (643)
T ss_dssp             HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBT
T ss_pred             HHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccccc
Confidence            999999999999999999999999999999998765221             1111   1122 233322111      0


Q ss_pred             cccCHHHHHHhhhhc------CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHh-hccccCCcccCccEEEEecchhHH
Q 039837          166 SAINWSELIEAADKA------GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCS-TLFSVVPEMIGQVTTLGLIPFFHI  238 (544)
Q Consensus       166 ~~~~~~~~~~~~~~~------~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~  238 (544)
                      ....+..........      .......+.|||||||.||||++||++++..... ....+  ++.++|++++.+|++|.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~--~~~~~d~~~~~~p~~~~  306 (643)
T d1pg4a_         229 RDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF--DYHPGDIYWCTADVGWV  306 (643)
T ss_dssp             TEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT--TCCTTCEEEECSCTTSH
T ss_pred             cchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh--CCCCCCEEEEeCChHHH
Confidence            111122222221111      1122335788999999999999999997655433 33444  67899999999999999


Q ss_pred             HHHHHHHHhhHhccceEEEcCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCC--CCccCccccccccEEEecC
Q 039837          239 YGITGICCATLRNKGKVVMMNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPI--VDEFDLSKLQLRAVMTAAA  312 (544)
Q Consensus       239 ~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~v~~~G~  312 (544)
                      +|+...++.+|..|+++++.+.    .++..+++.++++++|++.++|+++..|++...  ....+++++|.  ++++|+
T Consensus       307 ~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~--i~~~G~  384 (643)
T d1pg4a_         307 TGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRI--LGSVGE  384 (643)
T ss_dssp             HHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCE--EEEESS
T ss_pred             HHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEE--EEEEeC
Confidence            9987778899999999998753    378899999999999999999999999987654  24556788888  999999


Q ss_pred             CCCHhHHHHHHhhcC--CCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceE
Q 039837          313 PLAPDLLSSFEKKFP--GVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGEL  390 (544)
Q Consensus       313 ~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel  390 (544)
                      ++++++++++.+.++  ++.+++.||+||+|..++... +  .....+.+++|+|++|++++|+| ++|++++.|+.|||
T Consensus       385 pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~-~--~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~~Gel  460 (643)
T d1pg4a_         385 PINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL-P--GAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNL  460 (643)
T ss_dssp             CCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCC-T--TTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEE
T ss_pred             CCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecC-C--CccCCCCCccccccCCCEEEEEC-CCCCCCCCCceEEE
Confidence            999999999999983  578999999999987665432 1  11345678999999999999999 68999999999999


Q ss_pred             EEec--ccccccccCChhhhhccc--CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccc
Q 039837          391 CVRS--QCVMQGYYNNEEETARTI--DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVED  466 (544)
Q Consensus       391 ~v~~--~~~~~gy~~~~~~~~~~~--~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~  466 (544)
                      +|+|  |+++.|||++++.+...+  ..+|||+|||+|++|+||++++.||+||+||++|++|+|.+||++|.+||+|.+
T Consensus       461 ~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~e  540 (643)
T d1pg4a_         461 VITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAE  540 (643)
T ss_dssp             EECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEE
T ss_pred             EEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcce
Confidence            9999  568899999998887654  457899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837          467 AAVVSLPDEEAGEIPAACVVMNPNAKESE---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK  541 (544)
Q Consensus       467 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~  541 (544)
                      ++|++++++..|+.++++|++.++...+.   .+|+++++++|+++++|..|+++++||+|.+|||+|++|++++..+
T Consensus       541 aaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~  618 (643)
T d1pg4a_         541 AAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD  618 (643)
T ss_dssp             EEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred             EEEEEEECCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcCC
Confidence            99999999988999999999998877665   4789999999999999999999999999999999999999998754

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.5e-75  Score=601.89  Aligned_cols=507  Identities=24%  Similarity=0.366  Sum_probs=383.3

Q ss_pred             CCCCCCCCCHHHHHHhhhhhcCCceEEEEccCC--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHH
Q 039837           29 AVPVPENVTLPDFVLQDAELYADKVAFVEAVSG--KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVAL  106 (544)
Q Consensus        29 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~l  106 (544)
                      .+-.....||.++|+++|+++||++|+++..++  +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus         4 ~~~~~~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   83 (534)
T d1v25a_           4 STMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF   83 (534)
T ss_dssp             CCBCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CccCCCCCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHH
Confidence            344556779999999999999999999987554  469999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC-----CcEEEecccccccccCHHHHHHhhhh--
Q 039837          107 GIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----LPIIVLGEERIESAINWSELIEAADK--  179 (544)
Q Consensus       107 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--  179 (544)
                      ||+++|++++|+++.++.+++.++++.+++++++++...........     +.........................  
T Consensus        84 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (534)
T d1v25a_          84 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADP  163 (534)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCCC
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccccccccccccccccccc
Confidence            99999999999999999999999999999999999988776654422     23333322221111111111111000  


Q ss_pred             --cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEE
Q 039837          180 --AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVM  257 (544)
Q Consensus       180 --~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~  257 (544)
                        ..........+||||||.||||+++|.++...+..............++++..+|++|.+++...+...+..|..+..
T Consensus       164 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~  243 (534)
T d1v25a_         164 VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLP  243 (534)
T ss_dssp             CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEEC
T ss_pred             cccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeeec
Confidence              111223346889999999999999999998777665555544778899999999999999885555544444444444


Q ss_pred             cCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccC
Q 039837          258 MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGL  337 (544)
Q Consensus       258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  337 (544)
                      .+.+++..+...+.++++|++.++|+++..+++........++++|.  +++||+++++++.+++.+.  +.++++.||+
T Consensus       244 ~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~--~~~gG~~~~~~~~~~~~~~--~~~i~~~yG~  319 (534)
T d1v25a_         244 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRR--LVVGGSAAPRSLIARFERM--GVEVRQGYGL  319 (534)
T ss_dssp             TTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCE--EEECSSCCCHHHHHHHHHT--TCEEEEEEEC
T ss_pred             cccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeE--EEEecCCCCHHHHHHHHHh--CCeeeeeccc
Confidence            55689999999999999999999999999998766655667888777  9999999999999999875  7899999999


Q ss_pred             ccccccccccCCCCCCCC------CCCCCcccccCCCceEEEEeCCCCCcCCC--CCCceEEEecccccccccCChhhhh
Q 039837          338 TEHSCITLTYGDPANPSA------GSKKNSVGFILPNLEVKFINPETGKSLPS--NTPGELCVRSQCVMQGYYNNEEETA  409 (544)
Q Consensus       338 tE~~~~~~~~~~~~~~~~------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~  409 (544)
                      ||++.++...........      ....+++|+|++|++++|+| ++++.++.  |+.|||+|+|++++.|||++++.+.
T Consensus       320 te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~  398 (534)
T d1v25a_         320 TETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATR  398 (534)
T ss_dssp             GGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHH
T ss_pred             cccccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhh
Confidence            999988766432111100      12346899999999999999 57777765  7899999999999999999999999


Q ss_pred             cccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCC
Q 039837          410 RTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP  489 (544)
Q Consensus       410 ~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  489 (544)
                      ..+..+|||+|||+|++++||.+++.||.+|+||++|++|+|.+||++|.+||+|.+++|++++++..++.++|+++++.
T Consensus       399 ~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~  478 (534)
T d1v25a_         399 SALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRG  478 (534)
T ss_dssp             TTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----
T ss_pred             hhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999989999999998876


Q ss_pred             CCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837          490 NAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE  540 (544)
Q Consensus       490 ~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~  540 (544)
                      +.....+.+...+++.|+++++|..|+++++||+|++|||+|++||++|++
T Consensus       479 ~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~  529 (534)
T d1v25a_         479 EKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN  529 (534)
T ss_dssp             ---------------CCCTTTSCSBC--------------CCTTHHHHSTT
T ss_pred             CCCCHHHHHHHHHHhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHh
Confidence            544444444445788899999999999999999999999999999999864

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-73  Score=596.50  Aligned_cols=500  Identities=22%  Similarity=0.303  Sum_probs=403.5

Q ss_pred             CCH-HHHHHhhhhhcCCceEEEEcc----CCceeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCccHHHHHHHHH
Q 039837           36 VTL-PDFVLQDAELYADKVAFVEAV----SGKAYTYAQVARDTRGFAKALR-SLGLRKGQVVIVVLPNVAEYGIVALGIM  109 (544)
Q Consensus        36 ~~l-~~~l~~~a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~-~~Gi~~gd~V~i~~~n~~~~~~~~lA~~  109 (544)
                      .|+ ...|+++|+++||++|+++..    +++++||+||.++++++|++|+ ++|+++||+|+++++|++++++++|||+
T Consensus        58 lN~~~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~  137 (640)
T d1ry2a_          58 LNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAIS  137 (640)
T ss_dssp             ECHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhc
Confidence            356 455678999999999998531    2368999999999999999997 5799999999999999999999999999


Q ss_pred             HhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHH---------HhhcC-----CCcEE-Eecccccc-------cc
Q 039837          110 AAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYE---------KVKGL-----GLPII-VLGEERIE-------SA  167 (544)
Q Consensus       110 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~-----~~~~~-~~~~~~~~-------~~  167 (544)
                      ++|++++|+++.++.+++.++++++++++++++.....         .+...     .+... ........       ..
T Consensus       138 ~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (640)
T d1ry2a_         138 RIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRD  217 (640)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSE
T ss_pred             cCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccccccccccc
Confidence            99999999999999999999999999999998765321         11110     11111 11111000       00


Q ss_pred             cCHHHHHHhhhh------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhcc-ccCCcccCccEEEEecchhHHHH
Q 039837          168 INWSELIEAADK------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLF-SVVPEMIGQVTTLGLIPFFHIYG  240 (544)
Q Consensus       168 ~~~~~~~~~~~~------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~g  240 (544)
                      ............      ........+.+||||||.||||+++|++++........ .+  .+..++++++.+|++|.+|
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~--~~~~~d~~l~~~pl~~~~g  295 (640)
T d1ry2a_         218 LDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF--DTHQEDVFFTAGDIGWITG  295 (640)
T ss_dssp             EEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS--CCCSSCEEEECSCTTSHHH
T ss_pred             ccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhc--CCCcccceeeccchhhhhh
Confidence            111111111000      11223456789999999999999999998776544433 34  6789999999999999999


Q ss_pred             HHHHHHhhHhccceEEEcCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCC--CccCccccccccEEEecCCC
Q 039837          241 ITGICCATLRNKGKVVMMNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPIV--DEFDLSKLQLRAVMTAAAPL  314 (544)
Q Consensus       241 ~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~v~~~G~~~  314 (544)
                      +...++.++..|+++++.+.    .++..+++.++++++|++.++|+++..|.+....  ...+++++|.  +++||+++
T Consensus       296 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~--v~~gG~~l  373 (640)
T d1ry2a_         296 HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRC--LGSVGEPI  373 (640)
T ss_dssp             HHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCE--EEECSSCC
T ss_pred             HHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEE--EEEecccC
Confidence            87788899999999888764    3788999999999999999999999999876542  4456788777  99999999


Q ss_pred             CHhHHHHHHhhcC--CCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcC-CCCCCceEE
Q 039837          315 APDLLSSFEKKFP--GVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSL-PSNTPGELC  391 (544)
Q Consensus       315 ~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~-~~g~~Gel~  391 (544)
                      ++++++++.+.++  ...+++.||+||++.........  .....+.+++|+|++|++++|+|++++..+ +.+..|||+
T Consensus       374 ~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~--~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~  451 (640)
T d1ry2a_         374 AAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAG--GVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLA  451 (640)
T ss_dssp             CHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTT--TCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEE
T ss_pred             cHHHHHHHHHhcCCCcceEEeeecccccccccccccCC--CcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEE
Confidence            9999999999884  35699999999998766543311  124456789999999999999997666554 445679999


Q ss_pred             Eec--ccccccccCChhhhhccc--CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccce
Q 039837          392 VRS--QCVMQGYYNNEEETARTI--DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDA  467 (544)
Q Consensus       392 v~~--~~~~~gy~~~~~~~~~~~--~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  467 (544)
                      +++  |+++.|||++++.+.+.|  +.+|||+|||+|++|+||++++.||+||+||++|++|+|.+||++|.+||+|.++
T Consensus       452 i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a  531 (640)
T d1ry2a_         452 VKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAEC  531 (640)
T ss_dssp             ESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEE
T ss_pred             EEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEE
Confidence            998  689999999999998776  4569999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCCceeEEEEEeCCCCCCC----------HHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 039837          468 AVVSLPDEEAGEIPAACVVMNPNAKES----------EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK  537 (544)
Q Consensus       468 ~v~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~  537 (544)
                      +|++++++..|+.++|+|++.++...+          .+++.++++++|++|++|..|+++++||+|++|||+|++||++
T Consensus       532 ~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~  611 (640)
T d1ry2a_         532 AVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKI  611 (640)
T ss_dssp             EEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHS
T ss_pred             EEEEEECCCCCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHH
Confidence            999999998999999999998764332          2568888999999999999999999999999999999999998


Q ss_pred             HHHh
Q 039837          538 MLEK  541 (544)
Q Consensus       538 ~~~~  541 (544)
                      +..+
T Consensus       612 ~~~~  615 (640)
T d1ry2a_         612 LAGE  615 (640)
T ss_dssp             CC--
T ss_pred             HhCC
Confidence            7654

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=8.7e-72  Score=573.91  Aligned_cols=493  Identities=18%  Similarity=0.252  Sum_probs=415.5

Q ss_pred             ceeeecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc
Q 039837           20 EHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVA   99 (544)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~   99 (544)
                      +-++.+++.+.+.|.+.||.++|+++|+++||++|+++.  ++++||+||.++++++|++|++.|+++||+|+++++|+.
T Consensus         7 ~~~~~~~~~~~~~~~~~tl~~l~~~~a~~~Pd~~Al~~~--~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~   84 (514)
T d1amua_           7 QYLFAVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSI   84 (514)
T ss_dssp             HHHHHTTCCCCCCCTTCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH
T ss_pred             HHHHHhcCCCCCCCCCCcHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCH
Confidence            345778888899999999999999999999999999997  789999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcE-EEecccccccccCHHHHHHhhh
Q 039837          100 EYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPI-IVLGEERIESAINWSELIEAAD  178 (544)
Q Consensus       100 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  178 (544)
                      ++++++|||+++|++++|+++.++.+++.++++.+++++++++......+....... ...............   ....
T Consensus        85 ~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  161 (514)
T d1amua_          85 DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGT---NLHV  161 (514)
T ss_dssp             HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTTSCCS---CCCC
T ss_pred             HHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccccccccccccccccccc---cCCC
Confidence            999999999999999999999999999999999999999999999888776654221 111111100000000   0000


Q ss_pred             hcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEc
Q 039837          179 KAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM  258 (544)
Q Consensus       179 ~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~  258 (544)
                      .........+.+||||||.||+|.+||+++..........+  .....++++..+|++|..++ ..++.++..|+++++.
T Consensus       162 p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~~~~~~~~  238 (514)
T d1amua_         162 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL--NVTEKDRIGQFASISFDASV-WEMFMALLTGASLYII  238 (514)
T ss_dssp             CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS--CCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEEC
T ss_pred             CCCcccceEEEEccCCCCCcccccccccccccccccccccc--cccccccccceecccccccc-cccccccccccccccc
Confidence            01112223578999999999999999999999999888887  88899999999999999988 5677788889998887


Q ss_pred             Cc---cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecc
Q 039837          259 NR---FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAY  335 (544)
Q Consensus       259 ~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  335 (544)
                      ..   .+...+.+.+..+.++.+..+|......      ....+.+++.  ++++|+.+++++.+++.+   ++.+++.|
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~--~~~~G~~~~~~~~~~~~~---~~~~~~~y  307 (514)
T d1amua_         239 LKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERILSIQT--LITAGSATSPSLVNKWKE---KVTYINAY  307 (514)
T ss_dssp             CHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CTTTCCSCSE--EEEESSCCCHHHHHHHTT---TSEEEEEE
T ss_pred             ccccccchhhhhhhhhhhhcccccceeeecccc------cccccccccE--EEEecccCCHHHhhhhcc---ceeEEEee
Confidence            64   3567788899999999999988765533      3345666666  999999999999888766   67899999


Q ss_pred             cCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhccc---
Q 039837          336 GLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI---  412 (544)
Q Consensus       336 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---  412 (544)
                      |+||++.++......  ........+.|.+.++..+.+.| +++++++.|+.|||+|+||.++.|||+++..+...|   
T Consensus       308 G~tE~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~  384 (514)
T d1amua_         308 GPTETTICATTWVAT--KETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDN  384 (514)
T ss_dssp             CCGGGSSCSEEEECC--SSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEEC
T ss_pred             ccccCceeeeecccc--ccccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEccCcccccccccccccceeeEec
Confidence            999999877654322  11344556789999999999999 799999999999999999999999999999888776   


Q ss_pred             ---CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCC
Q 039837          413 ---DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP  489 (544)
Q Consensus       413 ---~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  489 (544)
                         +.++||+|||+|++|+||++++.||.+|+|+++|++|+|.+||++|.++|+|.+++|++.++...++.++|++++.+
T Consensus       385 ~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~  464 (514)
T d1amua_         385 PFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK  464 (514)
T ss_dssp             SSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS
T ss_pred             cccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCC
Confidence               45789999999999999999999999999999999999999999999999999999999999989999999998765


Q ss_pred             CCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHH
Q 039837          490 NAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD  536 (544)
Q Consensus       490 ~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~  536 (544)
                      +  .+.++++++++++|+.+++|..++++++||+|++|||+|++||+
T Consensus       465 ~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~  509 (514)
T d1amua_         465 H--IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE  509 (514)
T ss_dssp             C--CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred             C--CCHHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence            4  57899999999999999999999999999999999999999986

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.8e-70  Score=565.90  Aligned_cols=495  Identities=23%  Similarity=0.344  Sum_probs=416.0

Q ss_pred             CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837           35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV  114 (544)
Q Consensus        35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  114 (544)
                      +.||.++|+++|+++||++|+++.  ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus        24 ~~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i  101 (536)
T d1mdba_          24 GETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL  101 (536)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEEC--CEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcE
Confidence            369999999999999999999997  789999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhh---------cC-CC-cEEEecccccccccCHHHHHHhh---hhc
Q 039837          115 FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVK---------GL-GL-PIIVLGEERIESAINWSELIEAA---DKA  180 (544)
Q Consensus       115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~---------~~-~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~  180 (544)
                      ++|+++.++.+++.++++.++++++++++.......         .. .. ..+...  .......+++.....   ...
T Consensus       102 ~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  179 (536)
T d1mdba_         102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAG--EAEEFLPLEDLHTEPVKLPEV  179 (536)
T ss_dssp             EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEES--CCTTSEEGGGCCCCCCCCCCC
T ss_pred             EEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeee--ccccccchhhcccCCcCCCcc
Confidence            999999999999999999999999998764322110         00 01 111111  111111111110000   011


Q ss_pred             CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHH-HHHhhHhccceEEEcC
Q 039837          181 GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITG-ICCATLRNKGKVVMMN  259 (544)
Q Consensus       181 ~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~  259 (544)
                      .......+.+||||||.||||++||+++...+......+  .+...++++...|++|.+++.. .++..+..|.+++..+
T Consensus       180 ~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~  257 (536)
T d1mdba_         180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC--WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP  257 (536)
T ss_dssp             CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH--TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred             CccchHHhhhcccccccceeccccccccccccccccccc--ccccccccccccccccccceeeccccccccccccccccC
Confidence            122234578999999999999999999999998888877  7899999999999999998754 3444455578888888


Q ss_pred             ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcc
Q 039837          260 RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE  339 (544)
Q Consensus       260 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE  339 (544)
                      .+++..+...+++++++.+..+|..+..+...........++++.  +++||+++++.+.+++.+.+ +......|+.+|
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~~  334 (536)
T d1mdba_         258 SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQV--LQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAE  334 (536)
T ss_dssp             SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCE--EEEESSCCCHHHHTTHHHHT-CSEEEEEEECTT
T ss_pred             CCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCccee--EEEeccccccccccchhhcc-Cceeeecccccc
Confidence            889999999999999999999999999988766656666777777  99999999999999999999 788888888888


Q ss_pred             ccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeee
Q 039837          340 HSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLH  419 (544)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~  419 (544)
                      .+..+....    .......+++|.|+++....+++.++++.++.++.|||+++|+.++.||++++..+...+..++||+
T Consensus       335 ~~~~~~~~~----~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~  410 (536)
T d1mdba_         335 GLVNYTRLD----DPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYR  410 (536)
T ss_dssp             SCEEECCTT----SCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEE
T ss_pred             ccccccccc----cccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCccc
Confidence            775554432    1133345678999876665555558999999999999999999999999999999999998999999


Q ss_pred             cCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHH
Q 039837          420 TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIM  499 (544)
Q Consensus       420 TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  499 (544)
                      |||++++++||++++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..|+.+++++++.++ ..+.++++
T Consensus       411 tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~-~~~~~~l~  489 (536)
T d1mdba_         411 TGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAELK  489 (536)
T ss_dssp             EEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-CCCHHHHH
T ss_pred             cCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC-CCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988888899999988764 46788999


Q ss_pred             HHHHhc-ccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhhh
Q 039837          500 DFVASN-VATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR  543 (544)
Q Consensus       500 ~~l~~~-l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~~  543 (544)
                      ++++++ |+.+++|..|+++++||+|++|||+|++|+++++++|.
T Consensus       490 ~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~l~  534 (536)
T d1mdba_         490 AFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLL  534 (536)
T ss_dssp             HHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHHHHh
Confidence            999875 99999999999999999999999999999999998875

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=6.1e-67  Score=536.27  Aligned_cols=492  Identities=23%  Similarity=0.308  Sum_probs=405.7

Q ss_pred             CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837           36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF  115 (544)
Q Consensus        36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  115 (544)
                      .|+.++|+++|+++||++|+++.+.++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~   81 (503)
T d3cw9a1           2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP   81 (503)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            48999999999999999999998767899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHhcCceEEEeccchHHH---hhcC-CCcEEEeccccccc-ccCHHHHHHhhhhcCCCCCCCCCC
Q 039837          116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEK---VKGL-GLPIIVLGEERIES-AINWSELIEAADKAGNNFSNDDDV  190 (544)
Q Consensus       116 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~---~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  190 (544)
                      +|+++.++.+++++++++++++++|++......   .... ..+++.+.+..... ........ ..............+
T Consensus        82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~  160 (503)
T d3cw9a1          82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPI-EDPQREPAQPAFIFY  160 (503)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEHHHHEETTEECCCSCCC-CCCCCCTTSEEEEEE
T ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccchhhhhhhcccccCCcc-ccccchhhhhhhhcc
Confidence            999999999999999999999999988653221   1111 23333322110000 00000000 000112223345778


Q ss_pred             CCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHHH
Q 039837          191 KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDAL  270 (544)
Q Consensus       191 tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i  270 (544)
                      ||||||.||+|.++|+++...+......+.......+..+..+|++|..+.....+.+...++.+++.+.+++..+...+
T Consensus       161 TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  240 (503)
T d3cw9a1         161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLV  240 (503)
T ss_dssp             ECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHH
T ss_pred             cccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccccccccccccChHHhhhhh
Confidence            99999999999999999999988887766556678889999999999888877788888899999999999999999999


Q ss_pred             HHcCceeeecchHHHHHHhcCCC--CCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccC
Q 039837          271 ITHEVTFAPIVPPIILSLVKDPI--VDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYG  348 (544)
Q Consensus       271 ~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~  348 (544)
                      ..++++....+|+.+..+.....  ......+++|.  +++||+++++++...+.+.+ +..+.+.||++|++..+....
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~--i~~gG~~~~~~~~~~~~~~~-~~~~~~~yg~~e~~~~~~~~~  317 (503)
T d3cw9a1         241 QQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH--VTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLYMRQ  317 (503)
T ss_dssp             HHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCE--EEECSSCCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEEEES
T ss_pred             hhceeeccccccccccccccccccccccccccceEE--EEeccccccccccccccccc-cccccccccccccceeeeecc
Confidence            99999999999998877654322  23344566666  99999999999999999988 778999999999987776553


Q ss_pred             CCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEec-ccccccccCChhhhhcccCCCCeeecCceEEEc
Q 039837          349 DPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRS-QCVMQGYYNNEEETARTIDKNGWLHTGDIGYID  427 (544)
Q Consensus       349 ~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~-~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~  427 (544)
                      .     ......+.+.+.+.....+.+ ..++.++.|+.|++.+.+ +....+|++++..+.+.| .+|||+|||+|+++
T Consensus       318 ~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~  390 (503)
T d3cw9a1         318 P-----KTGTEMAPGFFSEVRIVRIGG-GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWT  390 (503)
T ss_dssp             C-----SSSSEEBCCTTCCEEEECTTS-CTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEEC
T ss_pred             c-----cccccccccccccceeeeeec-ccCcccCCCccccccccccccccccccCChhhhHHHh-cCCceecccccccc
Confidence            1     222223333333433433344 778899999999887665 556778999999998888 78999999999999


Q ss_pred             CCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHH-hcc
Q 039837          428 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVA-SNV  506 (544)
Q Consensus       428 ~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~-~~l  506 (544)
                      +||.+++.||+||+||++|++|+|.+||++|.+||+|.+++|++.+++..|+.+++++++.++...+.+++.++++ ++|
T Consensus       391 ~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l  470 (503)
T d3cw9a1         391 PEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSEL  470 (503)
T ss_dssp             TTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHSSS
T ss_pred             cCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999888888999999999888889999999995 679


Q ss_pred             cCCCceeEEEEeecCCCCCCcccchHHHHHHH
Q 039837          507 ATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM  538 (544)
Q Consensus       507 ~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~  538 (544)
                      +.|++|+.|+++++||+|++|||+|++|++++
T Consensus       471 ~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         471 ADFKRPKRYFILDQLPKNALNKVLRRQLVQQV  502 (503)
T ss_dssp             CGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred             CCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence            99999999999999999999999999999875