Citrus Sinensis ID: 039840

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MLCIIVHYLYRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK
Secondary Structure (PSIPRED)
cEEEEEEcccccccccccEEEcHHcHHHHHccccccccccccccccEEEEcccEEEccccccccccccEEEEEEEccccEEEEEEEcccccccccEEEEEEEEEEEEEcccccccEEEEccccccccccccccEEEEcccEEEcccEEEEEEEEcccccccccEEEEEccEEEEEEcccccEEEEcccccccccEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEcccccEEEEEEEEEHHHHHHcccccccccccccccccEEEcccccccccccEccccccEEEEEEccccHHHHHEEEccccccccEEEEEEEEEEEEEccccccccEEEEccccccccccccccEEEEEEEEEccccEEEEEEEEEcHcccccHHHHHHHccEEEEEEccccEEEEEcccEEccccEcc
Coil and Loop (DISEMBL)
MLCIIVHylyrshplaFSIVDLLVLVFdsffgggpteederiakgddvwreknvikpapgkrscncrnevyhkqigpgmFQQMTEQVCEQCQNVKYEREGYFVTVDIEkgmqdgqevvfcedgepiidgepgdlkasfgllregnnlhATVTITLVKLSCGLWDVQAVVGFEKTIKHldghlvdistkgitkpkevrk
Flexible Loop (DISEMBL)
MLCIIVHYLYRSHPLAFSIVDLLVLVFDSFFGggpteederiakgddvwreknvikpapgkrscncrNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTikhldghlvdistkgitkpkevrk
Low Complexity Region (SEG)
MLCIIVHYLYRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK
Disordered region (IsUnstruct)
*LCIIVHYLYRSHPLAFSIVDLLVLVFDSFFGGGP******IAKGDDVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDIST***********
Disordered Region (DISOPRED)
MLCIIV*****************VLVFDSFFGG************************************VYHKQIGPGMFQQMT****EQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPK**RK
Disordered Region (DISEMBL)
MLCIIVHYLYRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK
Disordered Region (DISPRO)
MLCIIVHYLYRSHPLAFSIVDLLVLVFDSFFGGGP**********DDVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLCIIVHYLYRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q6TUG0	358	DnaJ homolog subfamily B	yes	no	0.762	0.421	0.405	7e-30
Q99KV1	358	DnaJ homolog subfamily B	yes	no	0.757	0.418	0.407	8e-30
Q5RAJ6	358	DnaJ homolog subfamily B	yes	no	0.757	0.418	0.407	1e-29
Q9UBS4	358	DnaJ homolog subfamily B	yes	no	0.757	0.418	0.407	1e-29
Q3ZBA6	358	DnaJ homolog subfamily B	yes	no	0.757	0.418	0.402	3e-29
P81999	358	DnaJ homolog subfamily B	no	no	0.757	0.418	0.402	3e-29
Q8MPX3	355	DnaJ homolog dnj-20 OS=Ca	yes	no	0.696	0.388	0.379	4e-23
Q626I7	382	DnaJ homolog dnj-20 OS=Ca	N/A	no	0.696	0.361	0.322	3e-19
Q8WW22	397	DnaJ homolog subfamily A	no	no	0.782	0.390	0.299	1e-11
Q9JMC3	397	DnaJ homolog subfamily A	no	no	0.777	0.387	0.305	2e-11

>sp|Q6TUG0|DJB11_RAT DnaJ homolog subfamily B member 11 OS=Rattus norvegicus GN=Dnajb11 PE=2 SV=1

 Score =  130 bits (326), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 100/185 (54%), Gaps = 34/185 (18%)

Query: 34  GPTEEDERIAKGDD-------------------VWREKNVIKPAPGKRSCNCRNEVYHKQ 74
            P ++D  I +G D                   V R K V + APGKR CNCR E+   Q
Sbjct: 120 APRQQDRNIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQ 179

Query: 75  IGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDL 134
           +GPG FQ   E VC++C NVK   E   + V+IE G++DG E  F  +GEP +DGEPGDL
Sbjct: 180 LGPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDL 239

Query: 135 KASFGLL------REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTK 188
           +    ++      R G++L+  VT++L         V+A+VGFE  I HLDGH V IS  
Sbjct: 240 RFRIKVVKHRIFERRGDDLYTNVTVSL---------VEALVGFEMDITHLDGHKVHISRD 290

Query: 189 GITKP 193
            IT+P
Sbjct: 291 KITRP 295

Serves as a co-chaperone for HSPA5. Binds directly to both unfolded proteins that are substrates for ERAD and nascent unfolded peptide chains, but dissociates from the HSPA5-unfolded protein complex before folding is completed. May help recruiting HSPA5 and other chaperones to the substrate. Stimulates HSPA5 ATPase activity.
Rattus norvegicus (taxid: 10116)

>sp|Q99KV1|DJB11_MOUSE DnaJ homolog subfamily B member 11 OS=Mus musculus GN=Dnajb11 PE=1 SV=1

 Score =  130 bits (326), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 75/184 (40%), Positives = 100/184 (54%), Gaps = 34/184 (18%)

Query: 35  PTEEDERIAKGDD-------------------VWREKNVIKPAPGKRSCNCRNEVYHKQI 75
           P ++D  I +G D                   V R K V + APGKR CNCR E+   Q+
Sbjct: 121 PRQQDRNIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQL 180

Query: 76  GPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLK 135
           GPG FQ   E VC++C NVK   E   + V+IE G++DG E  F  +GEP +DGEPGDL+
Sbjct: 181 GPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLR 240

Query: 136 ASFGLL------REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKG 189
               ++      R G++L+  VT++L         V+A+VGFE  I HLDGH V IS   
Sbjct: 241 FRIKVVKHRIFERRGDDLYTNVTVSL---------VEALVGFEMDITHLDGHKVHISRDK 291

Query: 190 ITKP 193
           IT+P
Sbjct: 292 ITRP 295

Serves as a co-chaperone for HSPA5. Binds directly to both unfolded proteins that are substrates for ERAD and nascent unfolded peptide chains, but dissociates from the HSPA5-unfolded protein complex before folding is completed. May help recruiting HSPA5 and other chaperones to the substrate. Stimulates HSPA5 ATPase activity.

Mus musculus (taxid: 10090)

>sp|Q5RAJ6|DJB11_PONAB DnaJ homolog subfamily B member 11 OS=Pongo abelii GN=DNAJB11 PE=2 SV=1

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/184 (40%), Positives = 100/184 (54%), Gaps = 34/184 (18%)

Query: 35  PTEEDERIAKGDD-------------------VWREKNVIKPAPGKRSCNCRNEVYHKQI 75
           P ++D  I +G D                   V R K V + APGKR CNCR E+   Q+
Sbjct: 121 PRQQDRNIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQL 180

Query: 76  GPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLK 135
           GPG FQ   E VC++C NVK   E   + V+IE G++DG E  F  +GEP +DGEPGDL+
Sbjct: 181 GPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLR 240

Query: 136 ASFGLL------REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKG 189
               ++      R G++L+  VTI+L         V+++VGFE  I HLDGH V IS   
Sbjct: 241 FRIKVVKHPIFERRGDDLYTNVTISL---------VESLVGFEMDITHLDGHKVHISRDK 291

Query: 190 ITKP 193
           IT+P
Sbjct: 292 ITRP 295

Serves as a co-chaperone for HSPA5. Binds directly to both unfolded proteins that are substrates for ERAD and nascent unfolded peptide chains, but dissociates from the HSPA5-unfolded protein complex before folding is completed. May help recruiting HSPA5 and other chaperones to the substrate. Stimulates HSPA5 ATPase activity.

Pongo abelii (taxid: 9601)

>sp|Q9UBS4|DJB11_HUMAN DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/184 (40%), Positives = 100/184 (54%), Gaps = 34/184 (18%)

Query: 35  PTEEDERIAKGDD-------------------VWREKNVIKPAPGKRSCNCRNEVYHKQI 75
           P ++D  I +G D                   V R K V + APGKR CNCR E+   Q+
Sbjct: 121 PRQQDRNIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQL 180

Query: 76  GPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLK 135
           GPG FQ   E VC++C NVK   E   + V+IE G++DG E  F  +GEP +DGEPGDL+
Sbjct: 181 GPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLR 240

Query: 136 ASFGLL------REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKG 189
               ++      R G++L+  VTI+L         V+++VGFE  I HLDGH V IS   
Sbjct: 241 FRIKVVKHPIFERRGDDLYTNVTISL---------VESLVGFEMDITHLDGHKVHISRDK 291

Query: 190 ITKP 193
           IT+P
Sbjct: 292 ITRP 295

Serves as a co-chaperone for HSPA5. Binds directly to both unfolded proteins that are substrates for ERAD and nascent unfolded peptide chains, but dissociates from the HSPA5-unfolded protein complex before folding is completed. May help recruiting HSPA5 and other chaperones to the substrate. Stimulates HSPA5 ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q3ZBA6|DJB11_BOVIN DnaJ homolog subfamily B member 11 OS=Bos taurus GN=DNAJB11 PE=2 SV=1

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/184 (40%), Positives = 100/184 (54%), Gaps = 34/184 (18%)

Query: 35  PTEEDERIAKGDD-------------------VWREKNVIKPAPGKRSCNCRNEVYHKQI 75
           P ++D  I +G D                   V R K V + APGKR CNCR E+   Q+
Sbjct: 121 PRQQDRNIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQL 180

Query: 76  GPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLK 135
           GPG FQ   E VC++C NVK   E   + V+IE G++DG E  F  +GEP +DGEPGDL+
Sbjct: 181 GPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLR 240

Query: 136 ASFGLL------REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKG 189
               ++      R G++L+  VTI+L         V+++VGF+  I HLDGH V IS   
Sbjct: 241 FRIKVVKHSIFERRGDDLYTNVTISL---------VESLVGFDMDITHLDGHKVHISRDK 291

Query: 190 ITKP 193
           IT+P
Sbjct: 292 ITRP 295

Serves as a co-chaperone for HSPA5. Binds directly to both unfolded proteins that are substrates for ERAD and nascent unfolded peptide chains, but dissociates from the HSPA5-unfolded protein complex before folding is completed. May help recruiting HSPA5 and other chaperones to the substrate. Stimulates HSPA5 ATPase activity.

Bos taurus (taxid: 9913)

>sp|P81999|DJB11_CANFA DnaJ homolog subfamily B member 11 OS=Canis familiaris GN=DNAJB11 PE=1 SV=2

 Score =  127 bits (320), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/184 (40%), Positives = 100/184 (54%), Gaps = 34/184 (18%)

Query: 35  PTEEDERIAKGDD-------------------VWREKNVIKPAPGKRSCNCRNEVYHKQI 75
           P ++D  I +G D                   V R K V + APGKR CNCR E+   Q+
Sbjct: 121 PRQQDRNIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQL 180

Query: 76  GPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLK 135
           GPG FQ   E VC++C NVK   E   + V+IE G++DG E  F  +GEP +DGEPGDL+
Sbjct: 181 GPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLR 240

Query: 136 ASFGLL------REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKG 189
               ++      R G++L+  VTI+L         V+++VGF+  I HLDGH V IS   
Sbjct: 241 FRIKVVKHPIFERRGDDLYTNVTISL---------VESLVGFDMDITHLDGHKVHISRDK 291

Query: 190 ITKP 193
           IT+P
Sbjct: 292 ITRP 295

Serves as a co-chaperone for HSPA5. Binds directly to both unfolded proteins that are substrates for ERAD and nascent unfolded peptide chains, but dissociates from the HSPA5-unfolded protein complex before folding is completed. May help recruiting HSPA5 and other chaperones to the substrate. Stimulates HSPA5 ATPase activity.

Canis familiaris (taxid: 9615)

>sp|Q8MPX3|DNJ20_CAEEL DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=dnj-20 PE=4 SV=2

 Score =  107 bits (268), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 15/153 (9%)

Query: 47  DVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVD 106
           ++ R+K V K   G R CNCR+E+  +Q+G G FQ    +VC++C NVK  +E   + V+
Sbjct: 151 EIKRKKAVYKQTSGTRQCNCRHEMRTEQMGQGRFQMFQVKVCDECPNVKLVQENKVLEVE 210

Query: 107 IEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLL------REGNNLHATVTITLVKLSC 160
           +E G  +G + +F  +GEP I+G+PGDLK    +       R+G++L+  VTI+L     
Sbjct: 211 VEVGADNGHQQIFHGEGEPHIEGDPGDLKFKIRIQKHPRFERKGDDLYTNVTISL----- 265

Query: 161 GLWDVQAVVGFEKTIKHLDGHLVDISTKGITKP 193
                 A+ GFE  I+HLDGH+V +    +T P
Sbjct: 266 ----QDALNGFEMEIQHLDGHIVKVQRDKVTWP 294

Caenorhabditis elegans (taxid: 6239)

>sp|Q626I7|DNJ20_CAEBR DnaJ homolog dnj-20 OS=Caenorhabditis briggsae GN=dnj-20 PE=4 SV=1

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 42/180 (23%)

Query: 47  DVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVD 106
           ++ R+K V K   G R CNCR+E+  +Q+G G FQ    +VC++C NVK  +E   + V+
Sbjct: 151 EIKRKKAVYKQTSGTRQCNCRHEMRTEQMGQGRFQMFQVKVCDECPNVKLVQENKVLEVE 210

Query: 107 IEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLL------------------------- 141
           +E G  +G   +F  +GEP I+G+PGDLK    +                          
Sbjct: 211 VEVGADEGHTQIFHGEGEPHIEGDPGDLKFKIRIQKHPRFLISVTGIEIIELKVDELVEL 270

Query: 142 --------REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKP 193
                   R+G++L+  VTI+L           A+ GFE  I HLDGH+V +    +T P
Sbjct: 271 LLEGIRFERKGDDLYTNVTISL---------QDALNGFEMEILHLDGHMVKVQRDKVTWP 321

Caenorhabditis briggsae (taxid: 6238)

>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 59/214 (27%)

Query: 26  VFDSFFGGGPTEEDERIAKG---------DDVWR--------EKNVI----KPAPGKRS- 63
           +FD FFGGG     ER  K          +D++         +KNVI    +   GK+  
Sbjct: 88  IFDMFFGGGGRMARERRGKNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGVGGKKGS 147

Query: 64  ------CNCRN-EVYHKQIGPGMFQQMT---------------EQVCEQCQNVKYEREGY 101
                 C  R  +++ +QIGPGM QQ+                +  CE C   K  RE  
Sbjct: 148 VEKCPLCKGRGMQIHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCESCSGAKVIREKK 207

Query: 102 FVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDL------KASFGLLREGNNLHATVTITL 155
            + V +EKGM+DGQ+++F  +G+   + EPGD+      K      R G++L   + I L
Sbjct: 208 IIEVHVEKGMKDGQKILFHGEGDQEPELEPGDVIIVLDQKDHSVFQRRGHDLIMKMKIQL 267

Query: 156 VKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKG 189
                     +A+ GF+KTIK LD  ++ I++K 
Sbjct: 268 ---------SEALCGFKKTIKTLDNRILVITSKA 292

Homo sapiens (taxid: 9606)

>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 96/213 (45%), Gaps = 59/213 (27%)

Query: 26  VFDSFFGGGPTEEDERIAKG---------DDVWR--------EKNVI----KPAPGKRS- 63
           +FD FFGGG     ER  K          +D++         +KNVI    +   GK+  
Sbjct: 88  IFDMFFGGGGRMTRERRGKNVVHQLSVTLEDLYNGITKKLALQKNVICEKCEGIGGKKGS 147

Query: 64  ------CNCRN-EVYHKQIGPGMFQQMT---------------EQVCEQCQNVKYEREGY 101
                 C  R  +V+ +QIGPGM QQ+                +  CE C   K  RE  
Sbjct: 148 VEKCPLCKGRGMQVHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCENCSGAKVTREKK 207

Query: 102 FVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDL------KASFGLLREGNNLHATVTITL 155
            + V +EKGM+DGQ+++F  +G+   + +PGD+      K      R G +L   + I L
Sbjct: 208 IIEVHVEKGMKDGQKILFHGEGDQEPELDPGDVIIVLDQKDHSVFQRRGQDLIMKMKIQL 267

Query: 156 VKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTK 188
                     +A+ GF+KTIK LD  ++ IS+K
Sbjct: 268 ---------SEALCGFKKTIKTLDDRVLVISSK 291

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
225437515	345	PREDICTED: dnaJ homolog subfamily B memb	0.828	0.475	0.696	7e-71
224131018	349	predicted protein [Populus trichocarpa]	0.828	0.469	0.696	3e-70
224064488	345	predicted protein [Populus trichocarpa]	0.828	0.475	0.696	3e-70
356505618	343	PREDICTED: dnaJ homolog subfamily B memb	0.828	0.478	0.686	2e-68
356572775	343	PREDICTED: dnaJ homolog subfamily B memb	0.828	0.478	0.681	7e-67
356501879	346	PREDICTED: dnaJ homolog subfamily B memb	0.828	0.473	0.671	2e-66
255548499	345	Chaperone protein dnaJ, putative [Ricinu	0.808	0.463	0.725	8e-66
297821166	346	DNAJ heat shock family protein [Arabidop	0.828	0.473	0.646	3e-65
357511325	344	DnaJ homolog subfamily B member [Medicag	0.828	0.476	0.683	6e-65
15228802	346	DNAJ heat shock family protein [Arabidop	0.828	0.473	0.636	3e-64

>gi|225437515|ref|XP_002275221.1| PREDICTED: dnaJ homolog subfamily B member 11 [Vitis vinifera] gi|147769615|emb|CAN72389.1| hypothetical protein VITISV_040417 [Vitis vinifera] gi|297743958|emb|CBI36928.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (695), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 138/198 (69%), Positives = 149/198 (75%), Gaps = 34/198 (17%)

Query: 26  VFDSFFGGGPTEEDERIAKGDDV-------------------WREKNVIKPAPGKRSCNC 66
           +F SFFGGGP EE+ERI +GDDV                   WREKNV+KPAPGKR CNC
Sbjct: 115 IFSSFFGGGPAEEEERIVRGDDVIVELDATLEDLYMGGSLKVWREKNVLKPAPGKRRCNC 174

Query: 67  RNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPI 126
           RNEVYHKQIGPGMFQQMTEQVCEQC NVKYEREGYF+TVDIEKGMQDGQEVVF +DGEPI
Sbjct: 175 RNEVYHKQIGPGMFQQMTEQVCEQCPNVKYEREGYFITVDIEKGMQDGQEVVFYDDGEPI 234

Query: 127 IDGEPGDLKASF------GLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDG 180
           +DGEPGDLK            REGN+LH TVTITL         VQA+VGFEKTIKHLD 
Sbjct: 235 VDGEPGDLKFRIRTAPHDQFRREGNDLHTTVTITL---------VQALVGFEKTIKHLDE 285

Query: 181 HLVDISTKGITKPKEVRK 198
           HLV+I +KGITKPKEVRK
Sbjct: 286 HLVNIGSKGITKPKEVRK 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131018|ref|XP_002320981.1| predicted protein [Populus trichocarpa] gi|118486904|gb|ABK95286.1| unknown [Populus trichocarpa] gi|222861754|gb|EEE99296.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 138/198 (69%), Positives = 148/198 (74%), Gaps = 34/198 (17%)

Query: 26  VFDSFFGGGPTEEDERIAKGDDV-------------------WREKNVIKPAPGKRSCNC 66
           +F  FFGGG  EE+E+IA+GDDV                   WREKNVIKPAPGKR CNC
Sbjct: 119 IFSQFFGGGSMEEEEKIARGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNC 178

Query: 67  RNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPI 126
           RNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYF+TVDIEKGMQDGQEVVF EDGEPI
Sbjct: 179 RNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFLTVDIEKGMQDGQEVVFYEDGEPI 238

Query: 127 IDGEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDG 180
           IDGEPGDLK            REGN+LH TVTITL         VQA+V FEK I+HLD 
Sbjct: 239 IDGEPGDLKFRIRTAPHDIFRREGNDLHTTVTITL---------VQALVSFEKNIEHLDE 289

Query: 181 HLVDISTKGITKPKEVRK 198
           HLVDIS+KGITKPKEVR+
Sbjct: 290 HLVDISSKGITKPKEVRR 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064488|ref|XP_002301501.1| predicted protein [Populus trichocarpa] gi|222843227|gb|EEE80774.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 138/198 (69%), Positives = 149/198 (75%), Gaps = 34/198 (17%)

Query: 26  VFDSFFGGGPTEEDERIAKGDDV-------------------WREKNVIKPAPGKRSCNC 66
           +F  FFGGG  EE+E+I KGDDV                   WREKNVIKPAPGKR CNC
Sbjct: 115 IFSQFFGGGQMEEEEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNC 174

Query: 67  RNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPI 126
           RNEVYHKQIGPGMFQQMTEQVCEQCQNVK+EREGYF+TVDIEKGMQDGQEVVF EDGEPI
Sbjct: 175 RNEVYHKQIGPGMFQQMTEQVCEQCQNVKHEREGYFLTVDIEKGMQDGQEVVFYEDGEPI 234

Query: 127 IDGEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDG 180
           IDGEPGDLK            REGN+LH TVTITL         VQA+VGF+KT+KHLD 
Sbjct: 235 IDGEPGDLKFRIRTAPHDVFRREGNDLHTTVTITL---------VQALVGFKKTVKHLDE 285

Query: 181 HLVDISTKGITKPKEVRK 198
           HLVDIS+KGITKPKEVR+
Sbjct: 286 HLVDISSKGITKPKEVRR 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505618|ref|XP_003521587.1| PREDICTED: dnaJ homolog subfamily B member 11-like [Glycine max]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 136/198 (68%), Positives = 148/198 (74%), Gaps = 34/198 (17%)

Query: 26  VFDSFFGGGPTEEDERIAKGDD-------------------VWREKNVIKPAPGKRSCNC 66
           +F +FFGGGP EE+E+I KGDD                   VWREKNV+KPAPGKR CNC
Sbjct: 113 IFSTFFGGGPMEEEEKIVKGDDLVVDLDATLEDLYMGGTLKVWREKNVLKPAPGKRRCNC 172

Query: 67  RNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPI 126
           RNEVYHKQIGPGMFQQMTEQVCEQC NVKY REGYF+TVDIEKGMQDGQEV+F EDGEPI
Sbjct: 173 RNEVYHKQIGPGMFQQMTEQVCEQCPNVKYVREGYFITVDIEKGMQDGQEVLFYEDGEPI 232

Query: 127 IDGEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDG 180
           IDGE GDL+            REGN+LH+TVTITL         VQA+VGFEKTIKHLD 
Sbjct: 233 IDGESGDLRFRIRTAPHDVFRREGNDLHSTVTITL---------VQALVGFEKTIKHLDE 283

Query: 181 HLVDISTKGITKPKEVRK 198
           HLVDISTK ITKPK+VRK
Sbjct: 284 HLVDISTKEITKPKQVRK 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572775|ref|XP_003554541.1| PREDICTED: dnaJ homolog subfamily B member 11-like [Glycine max]

 Score =  258 bits (660), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 135/198 (68%), Positives = 145/198 (73%), Gaps = 34/198 (17%)

Query: 26  VFDSFFGGGPTEEDERIAKGDDV-------------------WREKNVIKPAPGKRSCNC 66
           +F SFFGGG  EE+E+I KGDDV                   WREKNV+KPA GKR CNC
Sbjct: 113 IFGSFFGGGQMEEEEKIVKGDDVVVDLDATLEDLYMGGTLKVWREKNVLKPASGKRRCNC 172

Query: 67  RNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPI 126
           RNEVYHKQIGPGMFQQMTEQVCEQC NVKY REGYF+TVDIEKGMQDGQEV+F EDGEPI
Sbjct: 173 RNEVYHKQIGPGMFQQMTEQVCEQCPNVKYVREGYFITVDIEKGMQDGQEVLFYEDGEPI 232

Query: 127 IDGEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDG 180
           IDGE GDL+            REGN+LH TVTITL         VQA+VGFEKTIKHLD 
Sbjct: 233 IDGESGDLRFRIRTAPHDVFRREGNDLHTTVTITL---------VQALVGFEKTIKHLDE 283

Query: 181 HLVDISTKGITKPKEVRK 198
           HLVDISTK ITKPK+VRK
Sbjct: 284 HLVDISTKEITKPKQVRK 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501879|ref|XP_003519751.1| PREDICTED: dnaJ homolog subfamily B member 11-like [Glycine max]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/198 (67%), Positives = 148/198 (74%), Gaps = 34/198 (17%)

Query: 26  VFDSFFGGGPTEEDERIAKGDDV-------------------WREKNVIKPAPGKRSCNC 66
           +F SFFGGGP EE+ERI KGDDV                   WREKNV+KPA GKR CNC
Sbjct: 116 IFASFFGGGPMEEEERIVKGDDVLVELDATLEDLYMGGSLKVWREKNVLKPASGKRLCNC 175

Query: 67  RNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPI 126
           RNE+YHKQIGPGMFQQ TEQVC++C NVKYER+G+F+TVDIEKGMQDGQEV+F EDGEPI
Sbjct: 176 RNELYHKQIGPGMFQQFTEQVCDKCPNVKYERDGHFITVDIEKGMQDGQEVLFFEDGEPI 235

Query: 127 IDGEPGDLK-----ASFGLL-REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDG 180
           IDGE GDL+     A   L  REGN+LH TVTITL         VQA+VGFEKT+KHLD 
Sbjct: 236 IDGESGDLRIRIRTAPHDLFRREGNDLHTTVTITL---------VQALVGFEKTVKHLDE 286

Query: 181 HLVDISTKGITKPKEVRK 198
           HLVDISTKGIT PK+VRK
Sbjct: 287 HLVDISTKGITNPKQVRK 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548499|ref|XP_002515306.1| Chaperone protein dnaJ, putative [Ricinus communis] gi|223545786|gb|EEF47290.1| Chaperone protein dnaJ, putative [Ricinus communis]

 Score =  255 bits (651), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 140/186 (75%), Gaps = 26/186 (13%)

Query: 19  IVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREKNVIKPAPGKRSCNCRNEVYHKQIGPG 78
           IVDL   + D + GG              VWREKNVIKPAPGKR CNCRNEVYHKQIGPG
Sbjct: 138 IVDLDATLEDLYMGGSLK-----------VWREKNVIKPAPGKRRCNCRNEVYHKQIGPG 186

Query: 79  MFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLK--- 135
           MFQQMTEQVCEQCQNVK+EREGYFVTVDIEKGMQDGQEVVF EDGEPIIDGEPGDLK   
Sbjct: 187 MFQQMTEQVCEQCQNVKFEREGYFVTVDIEKGMQDGQEVVFYEDGEPIIDGEPGDLKFRI 246

Query: 136 ---ASFGLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITK 192
              A     REGN+L  TVTITL         VQA+VGFEKTIKHLD HLVDI TKGITK
Sbjct: 247 RTAAHDRFRREGNDLRTTVTITL---------VQALVGFEKTIKHLDEHLVDIGTKGITK 297

Query: 193 PKEVRK 198
           PKEVRK
Sbjct: 298 PKEVRK 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821166|ref|XP_002878466.1| DNAJ heat shock family protein [Arabidopsis lyrata subsp. lyrata] gi|297324304|gb|EFH54725.1| DNAJ heat shock family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/198 (64%), Positives = 145/198 (73%), Gaps = 34/198 (17%)

Query: 26  VFDSFFGGGPTEEDERIAKGDDV-------------------WREKNVIKPAPGKRSCNC 66
           +F SFFGGG  EE+E++ KGDDV                   WREKNVIKPAPGKR CNC
Sbjct: 116 IFSSFFGGGSMEEEEKVVKGDDVIVELEATLEDLYMGGSIKVWREKNVIKPAPGKRKCNC 175

Query: 67  RNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPI 126
           RNEVYH+QIGPGMFQQMTEQVC++C NVKYEREGYFVTVDIEKGM+DG+EV F EDGEPI
Sbjct: 176 RNEVYHRQIGPGMFQQMTEQVCDKCPNVKYEREGYFVTVDIEKGMKDGEEVSFYEDGEPI 235

Query: 127 IDGEPGDLKASF------GLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDG 180
           +DGEPGDLK            R+GN+LH TV ITL         V+A+VGFEK+ KHLD 
Sbjct: 236 LDGEPGDLKFRIRTAPHARFRRDGNDLHMTVNITL---------VEALVGFEKSFKHLDD 286

Query: 181 HLVDISTKGITKPKEVRK 198
           H VDIS+KGITKPKEV+K
Sbjct: 287 HEVDISSKGITKPKEVKK 304

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511325|ref|XP_003625951.1| DnaJ homolog subfamily B member [Medicago truncatula] gi|355500966|gb|AES82169.1| DnaJ homolog subfamily B member [Medicago truncatula] gi|388502852|gb|AFK39492.1| unknown [Medicago truncatula]

 Score =  252 bits (643), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 136/199 (68%), Positives = 150/199 (75%), Gaps = 35/199 (17%)

Query: 26  VFDSFFGGGP-TEEDERIAKGDDV-------------------WREKNVIKPAPGKRSCN 65
           +F+SFFGGG   EE+E+IAKGDDV                   WREKNV+KPAPGKR CN
Sbjct: 113 IFNSFFGGGSMEEEEEKIAKGDDVIVDLDATLEDLYMGGSLKVWREKNVVKPAPGKRRCN 172

Query: 66  CRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEP 125
           CRNEVYH+QIGPGMFQQMTEQVC+QC NVKY REGYFVTVDIEKGM+DGQEV+F EDGEP
Sbjct: 173 CRNEVYHRQIGPGMFQQMTEQVCDQCANVKYVREGYFVTVDIEKGMKDGQEVLFYEDGEP 232

Query: 126 IIDGEPGDLK-----ASFGLL-REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLD 179
           IIDGE GDL+     A   L  REGN+LH TVTITL         VQA+VGFEKTIKHLD
Sbjct: 233 IIDGESGDLRFRIRTAPHELFKREGNDLHTTVTITL---------VQALVGFEKTIKHLD 283

Query: 180 GHLVDISTKGITKPKEVRK 198
            HLVDIS+KGIT PK+VRK
Sbjct: 284 EHLVDISSKGITNPKQVRK 302

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228802|ref|NP_191819.1| DNAJ heat shock family protein [Arabidopsis thaliana] gi|7362740|emb|CAB83110.1| putative protein [Arabidopsis thaliana] gi|20453120|gb|AAM19802.1| AT3g62600/F26K9_30 [Arabidopsis thaliana] gi|21593230|gb|AAM65179.1| unknown [Arabidopsis thaliana] gi|21928031|gb|AAM78044.1| At3g62600/F26K9_30 [Arabidopsis thaliana] gi|332646847|gb|AEE80368.1| DNAJ heat shock family protein [Arabidopsis thaliana]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 126/198 (63%), Positives = 144/198 (72%), Gaps = 34/198 (17%)

Query: 26  VFDSFFGGGPTEEDERIAKGDDV-------------------WREKNVIKPAPGKRSCNC 66
           +F SFFGGG  EE+E++ KGDDV                   WREKNVIKPAPGKR CNC
Sbjct: 116 IFSSFFGGGSMEEEEKVVKGDDVIVELEATLEDLYMGGSMKVWREKNVIKPAPGKRKCNC 175

Query: 67  RNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPI 126
           RNEVYH+QIGPGMFQQMTEQVC++C NVKYEREGYFVTVDIEKGM+DG+EV F EDGEPI
Sbjct: 176 RNEVYHRQIGPGMFQQMTEQVCDKCPNVKYEREGYFVTVDIEKGMKDGEEVSFYEDGEPI 235

Query: 127 IDGEPGDLKASF------GLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDG 180
           +DG+PGDLK            R+GN+LH  V ITL         V+A+VGFEK+ KHLD 
Sbjct: 236 LDGDPGDLKFRIRTAPHARFRRDGNDLHMNVNITL---------VEALVGFEKSFKHLDD 286

Query: 181 HLVDISTKGITKPKEVRK 198
           H VDIS+KGITKPKEV+K
Sbjct: 287 HEVDISSKGITKPKEVKK 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2081725	346	ATERDJ3B [Arabidopsis thaliana	0.777	0.445	0.680	1.3e-63
UNIPROTKB|F1NVY5	364	DNAJB11 "Uncharacterized prote	0.732	0.398	0.444	1.5e-33
RGD|1307373	358	Dnajb11 "DnaJ (Hsp40) homolog,	0.732	0.405	0.444	1.5e-33
MGI|MGI:1915088	358	Dnajb11 "DnaJ (Hsp40) homolog,	0.732	0.405	0.444	2.4e-33
UNIPROTKB|Q9UBS4	358	DNAJB11 "DnaJ homolog subfamil	0.732	0.405	0.444	3.8e-33
UNIPROTKB|Q3ZBA6	358	DNAJB11 "DnaJ homolog subfamil	0.732	0.405	0.438	7.9e-33
UNIPROTKB|F1PXX5	358	DNAJB11 "DnaJ homolog subfamil	0.732	0.405	0.438	7.9e-33
UNIPROTKB|P81999	358	DNAJB11 "DnaJ homolog subfamil	0.732	0.405	0.438	7.9e-33
UNIPROTKB|F1SFJ8	358	DNAJB11 "Uncharacterized prote	0.732	0.405	0.438	7.9e-33
ZFIN|ZDB-GENE-031113-9	360	dnajb11 "DnaJ (Hsp40) homolog,	0.732	0.402	0.456	7.7e-31

TAIR|locus:2081725 ATERDJ3B [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
 Identities = 115/169 (68%), Positives = 130/169 (76%)

Query:    36 TEEDERIAKGDDVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVK 95
             T ED  +     VWREKNVIKPAPGKR CNCRNEVYH+QIGPGMFQQMTEQVC++C NVK
Sbjct:   145 TLEDLYMGGSMKVWREKNVIKPAPGKRKCNCRNEVYHRQIGPGMFQQMTEQVCDKCPNVK 204

Query:    96 YEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLL------REGNNLHA 149
             YEREGYFVTVDIEKGM+DG+EV F EDGEPI+DG+PGDLK            R+GN+LH 
Sbjct:   205 YEREGYFVTVDIEKGMKDGEEVSFYEDGEPILDGDPGDLKFRIRTAPHARFRRDGNDLHM 264

Query:   150 TVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198
              V ITLV         +A+VGFEK+ KHLD H VDIS+KGITKPKEV+K
Sbjct:   265 NVNITLV---------EALVGFEKSFKHLDDHEVDISSKGITKPKEVKK 304

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS;RCA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005788 "endoplasmic reticulum lumen" evidence=IDA

GO:0052033 "pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response" evidence=IMP

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|F1NVY5 DNAJB11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 324 (119.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 72/162 (44%), Positives = 96/162 (59%)

Query:    40 ERIAKGD--DVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYE 97
             E +  G+  +V R K V + APGKR CNCR E+   Q+GPG FQ   E VC++C NVK  
Sbjct:   149 EEVYSGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNVKLV 208

Query:    98 REGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLL------REGNNLHATV 151
              E   + V+IE G++DG E  F  +GEP +DGEPGDL+    +L      R G++L+  V
Sbjct:   209 NEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVLKHPVFERRGDDLYTNV 268

Query:   152 TITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKP 193
             TI+LV         +A+ GFE  I HLDGH V ++   ITKP
Sbjct:   269 TISLV---------EALTGFEMDITHLDGHKVHVARDKITKP 301

GO:0006457 "protein folding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016556 "mRNA modification" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

RGD|1307373 Dnajb11 "DnaJ (Hsp40) homolog, subfamily B, member 11" [Rattus norvegicus (taxid:10116)]

 Score = 324 (119.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 72/162 (44%), Positives = 97/162 (59%)

Query:    40 ERIAKGD--DVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYE 97
             E +  G+  +V R K V + APGKR CNCR E+   Q+GPG FQ   E VC++C NVK  
Sbjct:   143 EEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNVKLV 202

Query:    98 REGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLL------REGNNLHATV 151
              E   + V+IE G++DG E  F  +GEP +DGEPGDL+    ++      R G++L+  V
Sbjct:   203 NEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHRIFERRGDDLYTNV 262

Query:   152 TITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKP 193
             T++LV         +A+VGFE  I HLDGH V IS   IT+P
Sbjct:   263 TVSLV---------EALVGFEMDITHLDGHKVHISRDKITRP 295

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016556 "mRNA modification" evidence=IEA;ISO

GO:0051082 "unfolded protein binding" evidence=IEA;ISO

MGI|MGI:1915088 Dnajb11 "DnaJ (Hsp40) homolog, subfamily B, member 11" [Mus musculus (taxid:10090)]

 Score = 324 (119.1 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 72/162 (44%), Positives = 97/162 (59%)

Query:    40 ERIAKGD--DVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYE 97
             E +  G+  +V R K V + APGKR CNCR E+   Q+GPG FQ   E VC++C NVK  
Sbjct:   143 EEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNVKLV 202

Query:    98 REGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLL------REGNNLHATV 151
              E   + V+IE G++DG E  F  +GEP +DGEPGDL+    ++      R G++L+  V
Sbjct:   203 NEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHRIFERRGDDLYTNV 262

Query:   152 TITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKP 193
             T++LV         +A+VGFE  I HLDGH V IS   IT+P
Sbjct:   263 TVSLV---------EALVGFEMDITHLDGHKVHISRDKITRP 295

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016556 "mRNA modification" evidence=ISO;IDA

GO:0051082 "unfolded protein binding" evidence=IDA

UNIPROTKB|Q9UBS4 DNAJB11 "DnaJ homolog subfamily B member 11" [Homo sapiens (taxid:9606)]

 Score = 322 (118.4 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
 Identities = 72/162 (44%), Positives = 97/162 (59%)

Query:    40 ERIAKGD--DVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYE 97
             E +  G+  +V R K V + APGKR CNCR E+   Q+GPG FQ   E VC++C NVK  
Sbjct:   143 EEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNVKLV 202

Query:    98 REGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLL------REGNNLHATV 151
              E   + V+IE G++DG E  F  +GEP +DGEPGDL+    ++      R G++L+  V
Sbjct:   203 NEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDDLYTNV 262

Query:   152 TITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKP 193
             TI+LV         +++VGFE  I HLDGH V IS   IT+P
Sbjct:   263 TISLV---------ESLVGFEMDITHLDGHKVHISRDKITRP 295

GO:0006457 "protein folding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016556 "mRNA modification" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

UNIPROTKB|Q3ZBA6 DNAJB11 "DnaJ homolog subfamily B member 11" [Bos taurus (taxid:9913)]

 Score = 319 (117.4 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
 Identities = 71/162 (43%), Positives = 97/162 (59%)

Query:    40 ERIAKGD--DVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYE 97
             E +  G+  +V R K V + APGKR CNCR E+   Q+GPG FQ   E VC++C NVK  
Sbjct:   143 EEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNVKLV 202

Query:    98 REGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLL------REGNNLHATV 151
              E   + V+IE G++DG E  F  +GEP +DGEPGDL+    ++      R G++L+  V
Sbjct:   203 NEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHSIFERRGDDLYTNV 262

Query:   152 TITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKP 193
             TI+LV         +++VGF+  I HLDGH V IS   IT+P
Sbjct:   263 TISLV---------ESLVGFDMDITHLDGHKVHISRDKITRP 295

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016556 "mRNA modification" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1PXX5 DNAJB11 "DnaJ homolog subfamily B member 11" [Canis lupus familiaris (taxid:9615)]

 Score = 319 (117.4 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
 Identities = 71/162 (43%), Positives = 97/162 (59%)

Query:    40 ERIAKGD--DVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYE 97
             E +  G+  +V R K V + APGKR CNCR E+   Q+GPG FQ   E VC++C NVK  
Sbjct:   143 EEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNVKLV 202

Query:    98 REGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLL------REGNNLHATV 151
              E   + V+IE G++DG E  F  +GEP +DGEPGDL+    ++      R G++L+  V
Sbjct:   203 NEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDDLYTNV 262

Query:   152 TITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKP 193
             TI+LV         +++VGF+  I HLDGH V IS   IT+P
Sbjct:   263 TISLV---------ESLVGFDMDITHLDGHKVHISRDKITRP 295

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|P81999 DNAJB11 "DnaJ homolog subfamily B member 11" [Canis lupus familiaris (taxid:9615)]

 Score = 319 (117.4 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
 Identities = 71/162 (43%), Positives = 97/162 (59%)

Query:    40 ERIAKGD--DVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYE 97
             E +  G+  +V R K V + APGKR CNCR E+   Q+GPG FQ   E VC++C NVK  
Sbjct:   143 EEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNVKLV 202

Query:    98 REGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLL------REGNNLHATV 151
              E   + V+IE G++DG E  F  +GEP +DGEPGDL+    ++      R G++L+  V
Sbjct:   203 NEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDDLYTNV 262

Query:   152 TITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKP 193
             TI+LV         +++VGF+  I HLDGH V IS   IT+P
Sbjct:   263 TISLV---------ESLVGFDMDITHLDGHKVHISRDKITRP 295

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1SFJ8 DNAJB11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 319 (117.4 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
 Identities = 71/162 (43%), Positives = 97/162 (59%)

Query:    40 ERIAKGD--DVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYE 97
             E +  G+  +V R K V + APGKR CNCR E+   Q+GPG FQ   E VC++C NVK  
Sbjct:   143 EEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNVKLV 202

Query:    98 REGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLL------REGNNLHATV 151
              E   + V+IE G++DG E  F  +GEP +DGEPGDL+    ++      R G++L+  V
Sbjct:   203 NEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDDLYTNV 262

Query:   152 TITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKP 193
             TI+LV         +++VGF+  I HLDGH V IS   IT+P
Sbjct:   263 TISLV---------ESLVGFDMDITHLDGHKVHISRDKITRP 295

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016556 "mRNA modification" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

ZFIN|ZDB-GENE-031113-9 dnajb11 "DnaJ (Hsp40) homolog, subfamily B, member 11" [Danio rerio (taxid:7955)]

 Score = 319 (117.4 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
 Identities = 74/162 (45%), Positives = 96/162 (59%)

Query:    40 ERIAKGD--DVWREKNVIKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYE 97
             E +  G+  +V R K V K APGKR CNCR E+   Q+GPG FQ   E VC++C N+K  
Sbjct:   145 EEVYSGNFVEVVRIKPVAKEAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNIKLV 204

Query:    98 REGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLL------REGNNLHATV 151
              E   + V+IE+G++D  E  F  +GEP IDGEPGDL+    +L      R G++L+  V
Sbjct:   205 NEERTLEVEIEQGVRDEMEYPFIGEGEPHIDGEPGDLRFRIKVLKHPVFERRGDDLYTNV 264

Query:   152 TITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKP 193
             TI+LV         +A+VGFE  I HLDGH V I    ITKP
Sbjct:   265 TISLV---------EALVGFEVDITHLDGHKVHIVRDKITKP 297

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028084001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_42, whole genome shotgun sequence); (345 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00006855001	SubName- Full=Chromosome undetermined scaffold_178, whole genome shotgun sequence; (899 aa)			•			•			0.871
	GSVIVG00032542001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (895 aa)			•			•			0.869
	GSVIVG00006252001	SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (392 aa)						•			0.800
	GSVIVG00017185001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (482 aa)			•						0.483
	GSVIVG00005738001	SubName- Full=Chromosome chr3 scaffold_157, whole genome shotgun sequence; (626 aa)			•						0.481
	GSVIVG00004141001	SubName- Full=Chromosome undetermined scaffold_611, whole genome shotgun sequence; (468 aa)			•						0.480
	GSVIVG00012517001	SubName- Full=Chromosome undetermined scaffold_388, whole genome shotgun sequence; Flags- Fragm [...] (372 aa)			•						0.478
	GSVIVG00017724001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (538 aa)			•						0.476
	GSVIVG00037232001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (658 aa)			•						0.475
	GSVIVG00006687001	SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (667 aa)			•						0.475

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	1e-16
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	8e-11
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	7e-06
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	8e-06
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	1e-05
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	2e-05
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	5e-04
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	5e-04
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	0.001
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	0.004
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	0.004

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score = 72.8 bits (180), Expect = 1e-16
 Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 17/113 (15%)

Query: 93  NVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPII-DGEPGDL------KASFGLLREGN 145
            V   RE   +TV I  G+ DGQ +    +G+     G PGDL      K      R+GN
Sbjct: 27  KVTRVREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGN 86

Query: 146 NLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198
           +L+  V I+L          +A++G E  +  L G  V +     T+P  V +
Sbjct: 87  DLYCEVPISL---------TEALLGGEIEVPTLGGK-VKLKIPPGTQPGTVLR 129

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 59.6 bits (145), Expect = 8e-11
 Identities = 41/206 (19%), Positives = 70/206 (33%), Gaps = 60/206 (29%)

Query: 26  VFDSFFGGGPTEED--ERIAKGDDVW-------------REKNVI--------------- 55
           +F+ FFGGG        R  +G D+               +K +                
Sbjct: 94  IFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGA 153

Query: 56  KPAPGKRSC-NCR-NEVYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGY 101
           KP    ++C  C  +         G F                +  C +C+     ++  
Sbjct: 154 KPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKK 213

Query: 102 FVTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDL------KASFGLLREGNNLHATVTIT 154
            ++V+I  G+ DG  +    +GE   +G   GDL      K      R+G++L+  V I+
Sbjct: 214 SISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPIS 273

Query: 155 LVKLSCGLWDVQAVVGFEKTIKHLDG 180
                      +A +G E  +  LDG
Sbjct: 274 F---------TEAALGGEIEVPTLDG 290

Length = 371

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 146 NLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198
           +L+ T+ I+L          +A++G    +  LDG  V I     T+P +  +
Sbjct: 1   DLYVTLPISLK---------EALLGGTVEVPTLDGRKVKIKIPAGTQPGDKLR 44

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 16/100 (16%)

Query: 88  CEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPII-DGEPGDL------KASFGL 140
           C  C+     +E   +TV I  G+  GQ +     G      G  GDL      K     
Sbjct: 203 CSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIF 262

Query: 141 LREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDG 180
            R+GN+L+  V I+           QA++G E  +  LDG
Sbjct: 263 ERDGNDLYIEVPISF---------TQAILGGEIEVPTLDG 293

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 55/231 (23%), Positives = 84/231 (36%), Gaps = 76/231 (32%)

Query: 26  VFDSFFGGGPTEED--ERIAKGDD-VWREK--------NVIKP----------------- 57
           VF++FFGGG        R+  G D + R +         V K                  
Sbjct: 91  VFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGT 150

Query: 58  APGKR-----SCNCRNEVYHKQ---IGPGMFQQMTEQVCEQCQN---------------- 93
           A   +     +C  R EV   Q   +G    Q MT + C  C+                 
Sbjct: 151 AGDSKPVTCDTCGGRGEVQTVQRSFLG----QVMTSRPCPTCRGVGEVIPDPCHECAGDG 206

Query: 94  -VKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEP-GDL------KASFGLLREGN 145
            V+  RE   +TV I  G+ DG  +     GE    G P GDL      +     +R+G+
Sbjct: 207 RVRARRE---ITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGD 263

Query: 146 NLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEV 196
           +LH TV++ +         V A +G   T++ +     +I+    T+P  V
Sbjct: 264 DLHCTVSVPM---------VDAALGTTVTVEAILDGPSEITIPPGTQPGSV 305

Length = 378

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 54/233 (23%), Positives = 89/233 (38%), Gaps = 80/233 (34%)

Query: 26  VFDSFFGGGPTEEDERIAKGDDVWRE-------------------KNVI--------KPA 58
           +FD  FGGG     ++  +G+D+                      K+VI         P 
Sbjct: 106 LFDLIFGGGRKPGGKK--RGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPK 163

Query: 59  PGKRSCNCRN----EVYHKQIGPGMFQQMTEQVC-------------EQCQN-----VKY 96
                C   N     V  +Q+G  M  Q T+  C             ++C+N     VK 
Sbjct: 164 DAFVDCKLCNGQGIRVQIRQMGS-MIHQ-TQSTCNSCNGQGKIIPESKKCKNCSGKGVKK 221

Query: 97  EREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFGLL----------REGNN 146
            R+   + V+I+KG+ +  ++ F   GE   D +P ++  +   +          REG +
Sbjct: 222 TRK--ILEVNIDKGVPNQHKITF--HGEA--DEKPNEIPGNVVFILNEKPHDTFKREGGD 275

Query: 147 LHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGH--LVDISTKGITKPKEVR 197
           L  T  I+L          +A+ GF   I HLDG   LV+     + KP +++
Sbjct: 276 LFITKKISL---------YEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIK 319

Length = 421

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 16/100 (16%)

Query: 88  CEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEP-GDL------KASFGL 140
           C +C      R    + V+I  G+ DGQ +    +GEP I G P GDL      K     
Sbjct: 215 CNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLF 274

Query: 141 LREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDG 180
            REG N++  + IT            A +G E  I  LDG
Sbjct: 275 KREGYNVYLEMPITF---------TDAALGGEIEIPTLDG 305

Length = 386

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 82  QMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEP-GDLKAS--- 137
            + E  CE+C+          + V I  G++DGQ +     GE  + G P GDL  +   
Sbjct: 223 SIIEDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHV 282

Query: 138 -----FGLLREGNNLHATVTITLVKLSCG 161
                FG  R+G++L  TV ++  +L+ G
Sbjct: 283 RPDKVFG--RDGDDLTVTVPVSFTELALG 309

Length = 392

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 30/138 (21%)

Query: 64  CNCRNEVY-HKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKG 110
           C+   EV   K +G   FQQ              +  C+ C+      E   + V+I KG
Sbjct: 172 CHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKG 231

Query: 111 MQDGQEVVFCEDGEPIID-GEPGDLKASFGLLRE-------GNNLHATVTITLVKLSCGL 162
           ++  Q++   + G   ++ G  GDL     L           N++  T  I+        
Sbjct: 232 IRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISY------- 284

Query: 163 WDVQAVVGFEKTIKHLDG 180
             + A++G E  IK LDG
Sbjct: 285 --LDAILGNEIIIKTLDG 300

Length = 372

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 16/100 (16%)

Query: 88  CEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEP-GDLKASFGLL----- 141
           C+ C    +E++ + V+V I  G++ GQ++     GE   +G P GDL   F +      
Sbjct: 206 CQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKF 265

Query: 142 -REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDG 180
            R+G+ ++ T+ I+          VQA +G    +  + G
Sbjct: 266 ERDGSTIYYTLPISF---------VQAALGDTVEVPTVHG 296

Length = 380

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 40/164 (24%), Positives = 61/164 (37%), Gaps = 37/164 (22%)

Query: 56  KPAPGKRSC-NC--RNEVYHKQIGPGMFQQMTEQVCEQCQNVKYERE--------GYF-- 102
            P  G++ C  C    E+Y +    G F +++ Q C  C      RE        G    
Sbjct: 168 DPGSGEKVCPTCGGSGEIYQR----GGFFRIS-QTCPTCGGEGVLREPCSKCNGRGLVIK 222

Query: 103 ---VTVDIEKGMQDGQEVVFCEDGEP-IIDGEPGDLKASFGLL------REGNNLHATVT 152
              + V I  G+ +G ++     G      G PGDL     +       R G+NL+  V 
Sbjct: 223 KETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVN 282

Query: 153 ITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEV 196
           IT+          +AV+G E  +  LDG    +     TK  + 
Sbjct: 283 ITVA---------EAVLGTELEVPLLDGKKEKVKIPPGTKEGDK 317

Length = 382

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	100.0
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14288	369	chaperone protein DnaJ; Provisional	100.0
PRK14287	371	chaperone protein DnaJ; Provisional	100.0
PRK14285	365	chaperone protein DnaJ; Provisional	100.0
PRK14278	378	chaperone protein DnaJ; Provisional	100.0
PRK14298	377	chaperone protein DnaJ; Provisional	100.0
PRK14276	380	chaperone protein DnaJ; Provisional	100.0
PRK14280	376	chaperone protein DnaJ; Provisional	100.0
PRK14282	369	chaperone protein DnaJ; Provisional	100.0
PRK14286	372	chaperone protein DnaJ; Provisional	100.0
PRK14277	386	chaperone protein DnaJ; Provisional	100.0
PRK14297	380	chaperone protein DnaJ; Provisional	100.0
PRK14301	373	chaperone protein DnaJ; Provisional	100.0
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	100.0
PRK14284	391	chaperone protein DnaJ; Provisional	100.0
PRK10767	371	chaperone protein DnaJ; Provisional	100.0
PRK14295	389	chaperone protein DnaJ; Provisional	100.0
PRK14279	392	chaperone protein DnaJ; Provisional	100.0
PRK14290	365	chaperone protein DnaJ; Provisional	100.0
PRK14294	366	chaperone protein DnaJ; Provisional	100.0
PRK14300	372	chaperone protein DnaJ; Provisional	100.0
PRK14281	397	chaperone protein DnaJ; Provisional	100.0
PRK14291	382	chaperone protein DnaJ; Provisional	99.97
PRK14293	374	chaperone protein DnaJ; Provisional	99.97
PRK14292	371	chaperone protein DnaJ; Provisional	99.97
PRK14283	378	chaperone protein DnaJ; Provisional	99.97
PRK14289	386	chaperone protein DnaJ; Provisional	99.97
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.94
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.88
PRK14299	291	chaperone protein DnaJ; Provisional	99.88
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.81
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.51
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	98.9
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	98.67
PRK14282	369	chaperone protein DnaJ; Provisional	98.27
PRK14290	365	chaperone protein DnaJ; Provisional	98.03
PRK14300	372	chaperone protein DnaJ; Provisional	97.98
PRK14294	366	chaperone protein DnaJ; Provisional	97.94
PRK14291	382	chaperone protein DnaJ; Provisional	97.93
PRK14284	391	chaperone protein DnaJ; Provisional	97.93
PRK14279	392	chaperone protein DnaJ; Provisional	97.93
PRK14285	365	chaperone protein DnaJ; Provisional	97.92
PRK10767	371	chaperone protein DnaJ; Provisional	97.92
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.92
PRK14295	389	chaperone protein DnaJ; Provisional	97.89
PRK14298	377	chaperone protein DnaJ; Provisional	97.89
PRK14278	378	chaperone protein DnaJ; Provisional	97.86
PRK14276	380	chaperone protein DnaJ; Provisional	97.82
PRK14301	373	chaperone protein DnaJ; Provisional	97.82
PRK14297	380	chaperone protein DnaJ; Provisional	97.79
PRK14299	291	chaperone protein DnaJ; Provisional	97.75
PRK14286	372	chaperone protein DnaJ; Provisional	97.73
PRK14280	376	chaperone protein DnaJ; Provisional	97.73
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.68
PRK14288	369	chaperone protein DnaJ; Provisional	97.67
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	97.65
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	97.64
PRK14281	397	chaperone protein DnaJ; Provisional	97.64
PRK14287	371	chaperone protein DnaJ; Provisional	97.64
PRK14289	386	chaperone protein DnaJ; Provisional	97.6
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	97.53
PRK14283	378	chaperone protein DnaJ; Provisional	97.53
PRK14277	386	chaperone protein DnaJ; Provisional	97.49
PRK14292	371	chaperone protein DnaJ; Provisional	97.46
PRK14293	374	chaperone protein DnaJ; Provisional	97.42
PTZ00037	421	DnaJ_C chaperone protein; Provisional	97.28
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	96.91
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.72
PRK10266	306	curved DNA-binding protein CbpA; Provisional	96.22
PRK14296	372	chaperone protein DnaJ; Provisional	95.82
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	95.22
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	88.49
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	81.28

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-39  Score=291.47  Aligned_cols=172  Identities=26%  Similarity=0.452  Sum_probs=147.6

Q ss_pred             CcCCCC-chhhHHhhhcCCCCC--CCCCCCCCCCCeEE-------------------ee-eeecCCCCc-----------
Q 039840           16 AFSIVD-LLVLVFDSFFGGGPT--EEDERIAKGDDVWR-------------------EK-NVIKPAPGK-----------   61 (198)
Q Consensus        16 ~f~~~~-~f~diF~~fFGgg~~--~~~~~~~kg~Di~~-------------------~~-~~c~~c~G~-----------   61 (198)
                      ||+.++ +|+|||++|||||++  ++++++++|+|+++                   ++ ..|..|+|+           
T Consensus        83 g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC  162 (371)
T COG0484          83 GFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTC  162 (371)
T ss_pred             CcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcC
Confidence            455555 599999999976542  33456789999542                   22 249999987           


Q ss_pred             CCCCceeEEEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-
Q 039840           62 RSCNCRNEVYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-  128 (198)
Q Consensus        62 ~~C~G~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-  128 (198)
                      ++|+|+|++.+.|.. |++++.+            +++|++|+|.+++++.++++|+||||+.+|++|+++|+|+++++ 
T Consensus       163 ~tC~G~G~v~~~~~~-g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~G  241 (371)
T COG0484         163 PTCNGSGQVRTVQRT-GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNG  241 (371)
T ss_pred             CCCCCcCeEEEEEee-eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCC
Confidence            789999998776422 5655544            78999999999999999999999999999999999999999986 


Q ss_pred             CCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          129 GEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       129 ~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      +++|||||.|.      |+|+|+|||++++|++.         +|+||.+++||||||+ ++|+||++||+|+++|
T Consensus       242 gp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~---------~AalG~~i~vptl~g~-~~l~ip~Gtq~G~~~r  307 (371)
T COG0484         242 GPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFT---------EAALGGEIEVPTLDGR-VKLKIPAGTQTGEVFR  307 (371)
T ss_pred             CCCccEEEEEEeecCCCeEECCCceEeccccCHH---------HHhcCCEEEEEecCCC-EEEecCCCCccCcEEE
Confidence            57899999998      99999999999999999         9999999999999998 9999999999999875

>PRK14296 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.6e-35  Score=264.54  Aligned_cols=167  Identities=25%  Similarity=0.385  Sum_probs=140.8

Q ss_pred             CchhhHHhhhcCCCCCCCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCceeE
Q 039840           21 DLLVLVFDSFFGGGPTEEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRNE   69 (198)
Q Consensus        21 ~~f~diF~~fFGgg~~~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G~   69 (198)
                      ++|+|+|++|||+|++ +.++++||+|+.                   +++. .|..|.|+           +.|+|+|.
T Consensus        99 ~~f~d~f~~~fggg~~-~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~  177 (372)
T PRK14296         99 SSFTNIFSDFFGSNKS-DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGE  177 (372)
T ss_pred             ccchhhhhhhcCCCcc-CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCce
Confidence            3578999999986432 223456788853                   2332 49999986           67999998


Q ss_pred             EEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCC-CCCCcceE
Q 039840           70 VYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPII-DGEPGDLK  135 (198)
Q Consensus        70 ~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~-~~~~GDLi  135 (198)
                      ++.. ++||.++|+.+            .++|+.|+|.+++.+.++++|+||+|+++|++|+|+|+|++.+ ++.+|||+
T Consensus       178 ~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~  257 (372)
T PRK14296        178 VLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLI  257 (372)
T ss_pred             EEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEE
Confidence            7654 77885454332            6889999999999999999999999999999999999999975 46799999


Q ss_pred             EEEE------eeec-CCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          136 ASFG------LLRE-GNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       136 v~i~------F~R~-G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+|+      |+|+ |+|||++++|||.         |||+|++++|+||||+ +.|++|++|+||+++|
T Consensus       258 v~v~v~~h~~F~R~~G~DL~~~~~Isl~---------eAllG~~~~i~tldG~-~~v~ip~~t~~g~~~r  317 (372)
T PRK14296        258 IDIYLKESKVFEIINNNDILMTYNISYL---------DAILGNEIIIKTLDGD-IKYKLPKSINSNELII  317 (372)
T ss_pred             EEEEEeCCCCEEEeCCCcEEEEEecCHH---------HHhCCCEEEeeCCCCC-EEEEECCccCCCcEEE
Confidence            9998      9995 8999999999999         9999999999999998 9999999999999985

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=3.8e-35  Score=268.88  Aligned_cols=165  Identities=26%  Similarity=0.489  Sum_probs=141.3

Q ss_pred             chhhHHhhhcCCCCCCCCCCCCCCCCeE-------------------Eeee-eecCCCCc----------CCCCceeEEE
Q 039840           22 LLVLVFDSFFGGGPTEEDERIAKGDDVW-------------------REKN-VIKPAPGK----------RSCNCRNEVY   71 (198)
Q Consensus        22 ~f~diF~~fFGgg~~~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~----------~~C~G~G~~~   71 (198)
                      +|.|+|++|||+|++  +++++||+|+.                   +++. +|..|+|+          +.|+|+|.++
T Consensus       102 d~~d~f~~~Fggg~~--~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~  179 (421)
T PTZ00037        102 DASDLFDLIFGGGRK--PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRV  179 (421)
T ss_pred             chhhhHHHhhccccc--cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEE
Confidence            478999999986431  23356799953                   2322 49999986          6799999755


Q ss_pred             E-EEeCCeeEEEEe---------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceE
Q 039840           72 H-KQIGPGMFQQMT---------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLK  135 (198)
Q Consensus        72 ~-~~~~~g~~~~~~---------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLi  135 (198)
                      . +++++ |+++++               .++|+.|+|.+++++.++++|+||||+.+|++|+|+|+|++.+++.+|||+
T Consensus       180 ~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLi  258 (421)
T PTZ00037        180 QIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVV  258 (421)
T ss_pred             EEEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEE
Confidence            4 47787 655543               378999999999999999999999999999999999999998888899999


Q ss_pred             EEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCC--CCCCeEEC
Q 039840          136 ASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGI--TKPKEVRK  198 (198)
Q Consensus       136 v~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~--t~pg~v~r  198 (198)
                      |+|+      |+|+|+||+++++|||.         +||+|++++|+||||+.+.|++|++  |+||+++|
T Consensus       259 v~I~~~ph~~F~R~G~DL~~~~~Isl~---------eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~  320 (421)
T PTZ00037        259 FILNEKPHDTFKREGGDLFITKKISLY---------EALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKV  320 (421)
T ss_pred             EEEEecCCCCcEEeCCeEEEEEeCCHH---------HHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEE
Confidence            9998      99999999999999999         9999999999999999899999976  99999874

>PRK14288 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.1e-34  Score=261.71  Aligned_cols=166  Identities=19%  Similarity=0.370  Sum_probs=139.7

Q ss_pred             CchhhHHhhhcCCCCC-CCCCCCCCCCCeE-------------------Eeee-eecCCCCc----------CCCCceeE
Q 039840           21 DLLVLVFDSFFGGGPT-EEDERIAKGDDVW-------------------REKN-VIKPAPGK----------RSCNCRNE   69 (198)
Q Consensus        21 ~~f~diF~~fFGgg~~-~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~----------~~C~G~G~   69 (198)
                      ++|.++|++|||+|++ ++..++++|+|+.                   +++. .|..|.|+          +.|+|+|.
T Consensus        88 ~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~  167 (369)
T PRK14288         88 EDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQ  167 (369)
T ss_pred             hhHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcE
Confidence            4567789998975421 1123356788843                   3333 59999986          67999998


Q ss_pred             EEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEE
Q 039840           70 VYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKAS  137 (198)
Q Consensus        70 ~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~  137 (198)
                      +...+   |++|+.+            .++|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++.+++.+|||+|+
T Consensus       168 ~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL~v~  244 (369)
T PRK14288        168 VFMRQ---GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLE  244 (369)
T ss_pred             EEEEe---ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCCCCCEEEE
Confidence            76555   4554443            68899999999999999999999999999999999999999887789999999


Q ss_pred             EE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          138 FG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       138 i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+      |+|+|+||+++++|||.         |||+|++++|+||||+.+.|++|++|+||+++|
T Consensus       245 i~v~~h~~f~R~G~DL~~~~~Isl~---------eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~  302 (369)
T PRK14288        245 ARVKEDEHFKREGCDLFIEAPVFFT---------TIALGHTIKVPSLKGDELELKIPRNARDRQTFA  302 (369)
T ss_pred             EEEEECCCcEEeCCEEEEEEecCHH---------HHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence            98      99999999999999999         999999999999999889999999999999875

>PRK14287 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.3e-34  Score=259.90  Aligned_cols=169  Identities=22%  Similarity=0.406  Sum_probs=143.8

Q ss_pred             CCchhhHHhhhcCCCCC-CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCce
Q 039840           20 VDLLVLVFDSFFGGGPT-EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCR   67 (198)
Q Consensus        20 ~~~f~diF~~fFGgg~~-~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~   67 (198)
                      +.+|+|+|++|||++++ +..+++++|+|+.                   +++. .|..|.|+           +.|+|+
T Consensus        85 f~~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~  164 (371)
T PRK14287         85 FGGFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGS  164 (371)
T ss_pred             ccchHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCE
Confidence            34588999999986432 1223356899953                   2332 49999986           579999


Q ss_pred             eEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcc
Q 039840           68 NEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGD  133 (198)
Q Consensus        68 G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GD  133 (198)
                      |.+... +++||++++.+            .++|+.|.|.+++.+.++++|.||+|+++|++|+|+|+|++.++ ..+||
T Consensus       165 G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GD  244 (371)
T PRK14287        165 GQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGD  244 (371)
T ss_pred             EEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCcc
Confidence            987654 78899987654            67899999999999999999999999999999999999999865 57899


Q ss_pred             eEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          134 LKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       134 Liv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+|+|+      |+|+|+||+++++|||.         ||++|++++|+||||+ +.|++|+++++|+++|
T Consensus       245 L~v~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~~ldg~-i~v~ip~g~~~g~~~r  305 (371)
T PRK14287        245 LYVVFNVKPHEFFERDGDDIYCEMPLTFP---------QVALGDEIEVPTLNGK-VKLKIPAGTQTGTSFR  305 (371)
T ss_pred             EEEEEEEecCCCEEEecCCeEEEEeccHH---------HHhCCCEEEEEcCCCC-EEEEECCCccCCcEEE
Confidence            999998      99999999999999999         9999999999999998 8999999999999875

>PRK14285 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.4e-34  Score=260.79  Aligned_cols=166  Identities=27%  Similarity=0.419  Sum_probs=140.7

Q ss_pred             CchhhHHhhhcCCCCCC-CCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCcee
Q 039840           21 DLLVLVFDSFFGGGPTE-EDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRN   68 (198)
Q Consensus        21 ~~f~diF~~fFGgg~~~-~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G   68 (198)
                      .+|+|||++|||+++++ +.++++||+|+.                   +++. +|..|+|+           +.|+|+|
T Consensus        94 ~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G  173 (365)
T PRK14285         94 EDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSG  173 (365)
T ss_pred             ccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCce
Confidence            35889999999864211 122356899953                   2332 49999986           5799999


Q ss_pred             EEEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceE
Q 039840           69 EVYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLK  135 (198)
Q Consensus        69 ~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLi  135 (198)
                      .+..   ++||+|+.+            .++|+.|+|++++++.++++|+||||+++|++|+|+|+|++.++ ..+|||+
T Consensus       174 ~~~~---~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~  250 (365)
T PRK14285        174 RVMQ---GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLY  250 (365)
T ss_pred             eEEe---cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEE
Confidence            7664   457775443            78899999999999999999999999999999999999999887 4689999


Q ss_pred             EEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          136 ASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       136 v~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+|+      |+|+|+||+++++|||.         |||+|++++|+||||+.++|++|++++||+++|
T Consensus       251 v~i~v~~h~~f~R~G~dL~~~~~Isl~---------eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~ir  310 (365)
T PRK14285        251 IKILIKPHKIFKRNGKDLYATLPISFT---------QAALGKEIKIQTIASKKIKIKIPKGTENDEQII  310 (365)
T ss_pred             EEEEEecCCCeEEeccceEEEEecCHH---------HHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEE
Confidence            9998      99999999999999999         999999999999999889999999999999875

>PRK14278 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.3e-34  Score=260.48  Aligned_cols=169  Identities=28%  Similarity=0.436  Sum_probs=143.5

Q ss_pred             CchhhHHhhhcCCCCCC-C-CCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCce
Q 039840           21 DLLVLVFDSFFGGGPTE-E-DERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCR   67 (198)
Q Consensus        21 ~~f~diF~~fFGgg~~~-~-~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~   67 (198)
                      ++|+|+|++|||+++++ + ..+++||+|+.                   +++. .|..|.|+           +.|+|+
T Consensus        86 ~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~  165 (378)
T PRK14278         86 GGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGR  165 (378)
T ss_pred             CchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCc
Confidence            45889999999864311 1 12356788843                   2332 49999986           579999


Q ss_pred             eEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcc
Q 039840           68 NEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGD  133 (198)
Q Consensus        68 G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GD  133 (198)
                      |.+... ++++|++++.+            .++|+.|+|++++.+.++++|.||||+++|++|+|+|+|++.++ ..+||
T Consensus       166 G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GD  245 (378)
T PRK14278        166 GEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGD  245 (378)
T ss_pred             eEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCC
Confidence            987655 67788887654            68899999999999999999999999999999999999999886 46899


Q ss_pred             eEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          134 LKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       134 Liv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+|+|+      |+|+|+||+++++|||.         +|++|++++|+|||+..+.|++|++++||+++|
T Consensus       246 L~v~i~~~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lr  307 (378)
T PRK14278        246 LYVEVHEQPHDVFVRDGDDLHCTVSVPMV---------DAALGTTVTVEAILDGPSEITIPPGTQPGSVIT  307 (378)
T ss_pred             EEEEEEECcCCCEEEcCCCEEEEEecCHH---------HHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEE
Confidence            999998      99999999999999999         999999999999977779999999999999875

>PRK14298 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.7e-34  Score=261.31  Aligned_cols=168  Identities=23%  Similarity=0.374  Sum_probs=141.1

Q ss_pred             CchhhHHhhhcCCCCCCCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCceeE
Q 039840           21 DLLVLVFDSFFGGGPTEEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRNE   69 (198)
Q Consensus        21 ~~f~diF~~fFGgg~~~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G~   69 (198)
                      ++|.|+|++|||++++++.++++||.|+.                   +++. .|..|.|+           +.|+|+|.
T Consensus        90 ~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~  169 (377)
T PRK14298         90 GGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQ  169 (377)
T ss_pred             CcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccE
Confidence            45889999999864321223456899953                   2332 49999986           67999998


Q ss_pred             EEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceE
Q 039840           70 VYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLK  135 (198)
Q Consensus        70 ~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLi  135 (198)
                      +... ++++|++|..+            .++|+.|+|++++.+.++++|+||||+++|++|+|+|+|++.+. +.+|||+
T Consensus       170 ~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~  249 (377)
T PRK14298        170 VTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLY  249 (377)
T ss_pred             EEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEE
Confidence            8765 44445554333            68899999999999999999999999999999999999999754 6799999


Q ss_pred             EEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          136 ASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       136 v~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+|+      |+|+|+||+++++|||.         |||+|++++|+||||+ +.|++|++++||+++|
T Consensus       250 i~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~tldG~-i~v~ip~g~~~g~~lr  308 (377)
T PRK14298        250 IVLHVKEHDYFERVGDDIISEIPISFT---------QAALGADIMVPTLYGK-VKMNIPPGTQTHSVFR  308 (377)
T ss_pred             EEEEEecCCCeEEEcCcEEEEEEeCHH---------HHhCCCeEEEecCCCC-EEEEeCCCcccCCEEE
Confidence            9998      99999999999999999         9999999999999998 8999999999999875

>PRK14276 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.3e-34  Score=258.17  Aligned_cols=168  Identities=25%  Similarity=0.449  Sum_probs=143.9

Q ss_pred             CchhhHHhhhcCCCCC-CCCCCCCCCCCeEE-------------------eee-eecCCCCc-----------CCCCcee
Q 039840           21 DLLVLVFDSFFGGGPT-EEDERIAKGDDVWR-------------------EKN-VIKPAPGK-----------RSCNCRN   68 (198)
Q Consensus        21 ~~f~diF~~fFGgg~~-~~~~~~~kg~Di~~-------------------~~~-~c~~c~G~-----------~~C~G~G   68 (198)
                      .+|+|+|++|||++++ +...++++|+|+.+                   ++. .|..|.|+           +.|+|+|
T Consensus        94 ~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G  173 (380)
T PRK14276         94 GGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSG  173 (380)
T ss_pred             cchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCee
Confidence            4588999999986432 12234568899532                   222 49999886           5799999


Q ss_pred             EEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcce
Q 039840           69 EVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDL  134 (198)
Q Consensus        69 ~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDL  134 (198)
                      .+... ++++|++|+.+            +++|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|++.++ ..+|||
T Consensus       174 ~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL  253 (380)
T PRK14276        174 VITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDL  253 (380)
T ss_pred             EEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCE
Confidence            87654 78899988754            68899999999999999999999999999999999999999876 468999


Q ss_pred             EEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          135 KASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       135 iv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      +|+|+      |+|+|+||+++++|||.         +|++|++++|+||||+ +.|++|++++||+++|
T Consensus       254 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~v~tldg~-i~v~ip~g~~~g~~~~  313 (380)
T PRK14276        254 YVVFRVEPSKKFERDGSTIYYTLPISFV---------QAALGDTVEVPTVHGD-VELKIPAGTQTGKKFR  313 (380)
T ss_pred             EEEEEEEECcceeeecceEEEEEecCHH---------HHhCCCeEEEEcCCCc-EEEEECCCCCCCCEEE
Confidence            99998      99999999999999999         9999999999999998 8999999999999875

>PRK14280 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.2e-34  Score=256.98  Aligned_cols=167  Identities=25%  Similarity=0.431  Sum_probs=142.7

Q ss_pred             chhhHHhhhcCCCCCC-CCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCceeE
Q 039840           22 LLVLVFDSFFGGGPTE-EDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRNE   69 (198)
Q Consensus        22 ~f~diF~~fFGgg~~~-~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G~   69 (198)
                      +|+|+|++|||+++++ ..++++||+|+.                   +++. .|..|.|+           +.|+|+|.
T Consensus        92 ~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~  171 (376)
T PRK14280         92 GFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQ  171 (376)
T ss_pred             cchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEE
Confidence            4789999999864321 123356899953                   2332 49999886           57999998


Q ss_pred             EEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceE
Q 039840           70 VYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLK  135 (198)
Q Consensus        70 ~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLi  135 (198)
                      +... ++++|++++.+            .++|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|++.++ ..+|||+
T Consensus       172 ~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~  251 (376)
T PRK14280        172 VSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLY  251 (376)
T ss_pred             EEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEE
Confidence            7654 77889887654            68899999999999999999999999999999999999999776 5789999


Q ss_pred             EEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          136 ASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       136 v~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+|+      |+|+|+||+++++|||.         |||+|++++|+||||+ +.|++|++++||+++|
T Consensus       252 v~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~tldg~-i~v~ip~g~~~g~~~~  310 (376)
T PRK14280        252 VVFRVRPHEFFERDGDDIYCEMPLTFA---------QAALGDEIEVPTLHGK-VKLKIPAGTQTGTQFR  310 (376)
T ss_pred             EEEEEecCCCeEEecCCEEEEEecCHH---------HHhCCCEEEEecCCce-EEEEECCCCCCCcEEE
Confidence            9998      99999999999999999         9999999999999997 8999999999999874

>PRK14282 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.4e-34  Score=255.90  Aligned_cols=166  Identities=25%  Similarity=0.368  Sum_probs=142.0

Q ss_pred             hhHHhhhcCCCCC--CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCceeEE
Q 039840           24 VLVFDSFFGGGPT--EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRNEV   70 (198)
Q Consensus        24 ~diF~~fFGgg~~--~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G~~   70 (198)
                      .|+|++|||++++  +++.+++||+|+.                   +++. +|..|.|+           +.|+|+|.+
T Consensus       102 ~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~  181 (369)
T PRK14282        102 RDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRI  181 (369)
T ss_pred             chhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEE
Confidence            3899999985321  1123356789943                   2332 49999986           679999987


Q ss_pred             EEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEE
Q 039840           71 YHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKA  136 (198)
Q Consensus        71 ~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv  136 (198)
                      +.. +++|||+|+.+            .++|+.|+|.+++.+.++++|+||||+.+|++|+|+|+|++.+. ..+|||+|
T Consensus       182 ~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i  261 (369)
T PRK14282        182 REERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYV  261 (369)
T ss_pred             EEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEE
Confidence            654 78999987765            67899999999999999999999999999999999999999765 57899999


Q ss_pred             EEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          137 SFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       137 ~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      +|+      |+|+|+||+++++|||.         ||++|++++|+||||+.+.|+||+++++|++++
T Consensus       262 ~i~v~~h~~F~r~G~DL~~~~~Isl~---------eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~ir  320 (369)
T PRK14282        262 IVRVRPDPRFKRSGSDLIYDVTIDYL---------QAILGTTVEVPLPEGGTTMLKIPPGTQPETVFR  320 (369)
T ss_pred             EEEEecCCcEEEecCCEEEEEEeCHH---------HHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEEE
Confidence            998      99999999999999999         999999999999999989999999999999875

>PRK14286 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.1e-33  Score=253.72  Aligned_cols=166  Identities=23%  Similarity=0.408  Sum_probs=140.0

Q ss_pred             CchhhHHhhhcCCCC-C----CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCC
Q 039840           21 DLLVLVFDSFFGGGP-T----EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSC   64 (198)
Q Consensus        21 ~~f~diF~~fFGgg~-~----~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C   64 (198)
                      ++|+|+|++|||+++ +    .+.++++||+|+.                   +++. +|..|.|+           +.|
T Consensus        94 ~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C  173 (372)
T PRK14286         94 GDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDC  173 (372)
T ss_pred             cchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCC
Confidence            468899999998542 1    1123356789953                   2322 49999986           579


Q ss_pred             CceeEEEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCC
Q 039840           65 NCRNEVYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEP  131 (198)
Q Consensus        65 ~G~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~  131 (198)
                      +|+|.+...+   |++|+.+            .++|+.|+|.+++++.+.++|+||||+++|++|+|+|+|++.++ ..+
T Consensus       174 ~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~  250 (372)
T PRK14286        174 GGSGQIRRTQ---GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPNGGPH  250 (372)
T ss_pred             cCeEEEEEEe---ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccccCCCCCCC
Confidence            9999876654   5665433            68899999999999999999999999999999999999999876 468


Q ss_pred             cceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          132 GDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       132 GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |||+|+|+      |+|+|+||+++++|+|.         +||+|++++|+||||+.+.|++|++++||+++|
T Consensus       251 GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~r  314 (372)
T PRK14286        251 GDLYVVTHIKKHELFERQGNDLILVRKISLA---------QAILGAEIEVPTIDGKKAKMKIPEGTESGQVFR  314 (372)
T ss_pred             ceEEEEEEEccCCCEEEecCCEEEEEEECHH---------HHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEE
Confidence            99999998      99999999999999999         999999999999999989999999999999875

>PRK14277 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.1e-33  Score=253.62  Aligned_cols=168  Identities=26%  Similarity=0.387  Sum_probs=140.9

Q ss_pred             CchhhHHhhhcCC---CCC-CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCC
Q 039840           21 DLLVLVFDSFFGG---GPT-EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCN   65 (198)
Q Consensus        21 ~~f~diF~~fFGg---g~~-~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~   65 (198)
                      ++|.|+|++||++   |++ +..++++||+|+.                   +++. .|..|.|+           +.|+
T Consensus       100 ~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~  179 (386)
T PRK14277        100 GGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCH  179 (386)
T ss_pred             cchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCC
Confidence            3466778777763   111 1123356889853                   2332 49999885           5799


Q ss_pred             ceeEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCC
Q 039840           66 CRNEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEP  131 (198)
Q Consensus        66 G~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~  131 (198)
                      |+|.+... +++||++|+.+            .++|+.|+|++++.+.+.++|+||+|+++|++|+|+|+|++.+. ..+
T Consensus       180 G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~  259 (386)
T PRK14277        180 GTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPN  259 (386)
T ss_pred             CEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEEccccccCCCCCCC
Confidence            99987654 78999988765            68899999999999999999999999999999999999999765 578


Q ss_pred             cceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          132 GDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       132 GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |||+|+|+      |+|+|+||+++++|||.         +||+|++++|+||||+ +.|++|++++||+++|
T Consensus       260 GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~r  322 (386)
T PRK14277        260 GDLYIVIKVKPHPLFKREGYNVYLEMPITFT---------DAALGGEIEIPTLDGK-VKFTIPEGTQTGTKFR  322 (386)
T ss_pred             ccEEEEEEEecCCCeEEecCCEEEEEEcCHH---------HHhCCCEEEEEcCCCC-EEEEECCCCCCCCEEE
Confidence            99999998      99999999999999999         9999999999999998 8999999999999875

>PRK14297 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.4e-33  Score=252.09  Aligned_cols=167  Identities=25%  Similarity=0.430  Sum_probs=141.7

Q ss_pred             chhhHHhhhcCCC--CC-CCCCCCCCCCCeEE-------------------eee-eecCCCCc-----------CCCCce
Q 039840           22 LLVLVFDSFFGGG--PT-EEDERIAKGDDVWR-------------------EKN-VIKPAPGK-----------RSCNCR   67 (198)
Q Consensus        22 ~f~diF~~fFGgg--~~-~~~~~~~kg~Di~~-------------------~~~-~c~~c~G~-----------~~C~G~   67 (198)
                      +|+|||++|||++  +. ++..+++||+|+.+                   ++. .|..|.|+           +.|+|+
T Consensus        95 ~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~  174 (380)
T PRK14297         95 GFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGT  174 (380)
T ss_pred             chhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCe
Confidence            5889999999853  11 12233567999532                   322 48999886           679999


Q ss_pred             eEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcc
Q 039840           68 NEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGD  133 (198)
Q Consensus        68 G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GD  133 (198)
                      |.+... ++++|++++.+            .++|..|+|.+++++.++++|+||||+++|++|+++|+|++.+. ..+||
T Consensus       175 G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GD  254 (380)
T PRK14297        175 GQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGD  254 (380)
T ss_pred             EEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCcc
Confidence            987654 78888876654            67899999999999999999999999999999999999999775 46899


Q ss_pred             eEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          134 LKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       134 Liv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+|+|+      |+|+|+||+++++|||.         |||+|++++|+||||+ +.|++|++++||+++|
T Consensus       255 L~v~v~v~~h~~f~R~G~DL~~~~~Isl~---------eAl~G~~~~i~~ldg~-~~v~ip~g~~~g~~~r  315 (380)
T PRK14297        255 LYINIRVAPHKTFKRKGFDIYIDKHISFA---------KAALGTEIKVPTVDGE-VKYEVPAGTQPGTVFR  315 (380)
T ss_pred             EEEEEEEcCCCCEEEeCCCEEEEEEeCHH---------HHhCCCcEEEEcCCCc-EEEEECCCcCCCCEEE
Confidence            999998      99999999999999999         9999999999999997 8999999999999875

>PRK14301 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.8e-33  Score=251.44  Aligned_cols=166  Identities=27%  Similarity=0.436  Sum_probs=139.2

Q ss_pred             CCchhhHHhhhcCCCCC--CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCc
Q 039840           20 VDLLVLVFDSFFGGGPT--EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNC   66 (198)
Q Consensus        20 ~~~f~diF~~fFGgg~~--~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G   66 (198)
                      ++.|+|+|++|||+|++  .+..++.||+|+.                   +++. .|..|.|+           +.|+|
T Consensus        90 ~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G  169 (373)
T PRK14301         90 FSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGG  169 (373)
T ss_pred             ccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccC
Confidence            34678999999974321  1223456899953                   2332 49999986           67999


Q ss_pred             eeEEEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcc
Q 039840           67 RNEVYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGD  133 (198)
Q Consensus        67 ~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GD  133 (198)
                      +|.+...+   |++|+.+            .++|+.|+|.+++.+.++++|+||+|+++|++|+|+|+|++.+. +.+||
T Consensus       170 ~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GD  246 (373)
T PRK14301        170 SGQVRQSQ---GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGD  246 (373)
T ss_pred             eeEEEEEe---eeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCCCCCCCcC
Confidence            99876544   5555443            68899999999999999999999999999999999999999775 57899


Q ss_pred             eEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          134 LKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       134 Liv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+|+|+      |+|+|+||+++++|||.         +||+|++++|+||||+ +.|++|++++||+++|
T Consensus       247 Liv~i~v~~h~~f~r~G~DL~~~~~Isl~---------eAl~G~~~~v~tldG~-i~v~ip~g~~~g~~~r  307 (373)
T PRK14301        247 LYVVITVEDDKIFQRQGQDLVVTQEISFV---------QAALGDRIEVPTLDDP-VTLDIPKGTQSGEVFR  307 (373)
T ss_pred             EEEEEEEEECCCceeecCcEEEEEEecHH---------HHhCCCeEEEecCCcc-EEEEECCCcCCCcEEE
Confidence            999998      99999999999999999         9999999999999998 9999999999999875

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=100.00  E-value=8.9e-33  Score=247.61  Aligned_cols=169  Identities=27%  Similarity=0.431  Sum_probs=143.5

Q ss_pred             CCchhhHHhhhcCCCCC--C-CCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCC
Q 039840           20 VDLLVLVFDSFFGGGPT--E-EDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCN   65 (198)
Q Consensus        20 ~~~f~diF~~fFGgg~~--~-~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~   65 (198)
                      +++|+|+|++|||++.+  + +..+++||+|+.                   +++. +|..|.|+           +.|+
T Consensus        88 ~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~  167 (354)
T TIGR02349        88 FGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCG  167 (354)
T ss_pred             cCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCC
Confidence            34688999999985321  1 123456788853                   2222 48999886           5799


Q ss_pred             ceeEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCC
Q 039840           66 CRNEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEP  131 (198)
Q Consensus        66 G~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~  131 (198)
                      |+|.+... +++||++|+.+            .++|+.|+|++++.+.+.++|+||+|+++|++|+|+|+|++.+. ..+
T Consensus       168 G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~  247 (354)
T TIGR02349       168 GTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPN  247 (354)
T ss_pred             CeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccCCCCCCCC
Confidence            99987654 78999988755            67899999999999999999999999999999999999998765 578


Q ss_pred             cceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          132 GDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       132 GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |||+|+|+      |+|+|+||+++++|||.         +||+|++++|+|||| .+.|++|++++||++++
T Consensus       248 GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~---------eAl~G~~~~i~~ldG-~i~v~ip~g~~~g~~~~  310 (354)
T TIGR02349       248 GDLYVVIRVKPHKIFERDGNDLYIEVPISFT---------QAILGGEIEVPTLDG-DVKLKIPAGTQSGTVFR  310 (354)
T ss_pred             CCEEEEEEEecCcceEEecCCEEEEEEeCHH---------HHhCCCeEEEecCCc-eEEEEECCcccCCcEEE
Confidence            99999998      99999999999999999         999999999999999 49999999999999874

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14284 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.3e-32  Score=249.82  Aligned_cols=163  Identities=20%  Similarity=0.312  Sum_probs=136.5

Q ss_pred             hhHHhhhcCCCC---C-C-CCCCCCCCCCeEE-------------------eee-eecCCCCc-----------CCCCce
Q 039840           24 VLVFDSFFGGGP---T-E-EDERIAKGDDVWR-------------------EKN-VIKPAPGK-----------RSCNCR   67 (198)
Q Consensus        24 ~diF~~fFGgg~---~-~-~~~~~~kg~Di~~-------------------~~~-~c~~c~G~-----------~~C~G~   67 (198)
                      .|+|++|||+++   + + +..++++|+|+.+                   ++. .|..|.|+           +.|+|+
T Consensus       105 ~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~  184 (391)
T PRK14284        105 GSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGS  184 (391)
T ss_pred             ccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCe
Confidence            688999997521   1 1 1233467888543                   332 49999886           679999


Q ss_pred             eEEEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcce
Q 039840           68 NEVYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDL  134 (198)
Q Consensus        68 G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDL  134 (198)
                      |.+..++   |++|+.+            .++|+.|+|.+++++.++++|+||||+++|++|+|+|+|++.++ +.+|||
T Consensus       185 G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL  261 (391)
T PRK14284        185 GQVVQSR---GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDL  261 (391)
T ss_pred             eEEEEEe---ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCCCCCCCEEEEeccccCCCCCCCCCCE
Confidence            9877555   4555333            68899999999999999999999999999999999999999886 578999


Q ss_pred             EEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCC-CcEEEEeeCCCCCCCeEEC
Q 039840          135 KASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLD-GHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       135 iv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ld-G~~~~i~~~~~t~pg~v~r  198 (198)
                      +|+|+      |+|+|+||+++++|||.         ||++|++++|+||| |+.+.|+||++++||+++|
T Consensus       262 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~~~  323 (391)
T PRK14284        262 YVFIDVEPHPVFERRGDDLILELPIGFV---------DAALGMKKEIPTLLKEGTCRLTIPEGIQSGTILK  323 (391)
T ss_pred             EEEEEEecCCCceeecCCEEEEEEecHH---------HHhCCCeEEEeecCCCcEEEEEECCccCCCeEEE
Confidence            99998      99999999999999999         99999999999999 6679999999999999875

>PRK10767 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.6e-32  Score=247.49  Aligned_cols=165  Identities=25%  Similarity=0.450  Sum_probs=137.7

Q ss_pred             CchhhHHhhhcCCCCCCCCCCCCCCCCeEE-------------------eee-eecCCCCc-----------CCCCceeE
Q 039840           21 DLLVLVFDSFFGGGPTEEDERIAKGDDVWR-------------------EKN-VIKPAPGK-----------RSCNCRNE   69 (198)
Q Consensus        21 ~~f~diF~~fFGgg~~~~~~~~~kg~Di~~-------------------~~~-~c~~c~G~-----------~~C~G~G~   69 (198)
                      +.|.|+|++|||++++++.++++||+|+.+                   ++. .|..|.|+           +.|+|+|.
T Consensus        91 ~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~  170 (371)
T PRK10767         91 DIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQ  170 (371)
T ss_pred             cchhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeE
Confidence            447889999997532212234568999542                   222 48999886           57999998


Q ss_pred             EEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEE
Q 039840           70 VYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKA  136 (198)
Q Consensus        70 ~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv  136 (198)
                      +...+   ||+|+.+            .++|+.|+|++++++.+.++|.||||+.+|++|+|+|+|++.+. ..+|||+|
T Consensus       171 ~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v  247 (371)
T PRK10767        171 VRMQQ---GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYV  247 (371)
T ss_pred             EEEee---ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEE
Confidence            76655   4554332            67899999999999999999999999999999999999999654 57999999


Q ss_pred             EEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          137 SFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       137 ~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      +|+      |+|+|+||+++++|||.         +||+|++++|+||||. +.|++|++++||+++|
T Consensus       248 ~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~~ldG~-i~v~ip~g~~~g~~~~  305 (371)
T PRK10767        248 QIHVKEHPIFERDGNDLYCEVPISFT---------TAALGGEIEVPTLDGR-VKLKIPEGTQTGKLFR  305 (371)
T ss_pred             EEEEeeCCCEEEecCCEEEEEEeCHH---------HHhCCCeEEEecCCCc-EEEEeCCCCCCCCEEE
Confidence            998      99999999999999999         9999999999999995 9999999999999875

>PRK14295 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.1e-32  Score=248.55  Aligned_cols=164  Identities=26%  Similarity=0.374  Sum_probs=137.2

Q ss_pred             chhhHHhhhcCCCCCCCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCceeEE
Q 039840           22 LLVLVFDSFFGGGPTEEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRNEV   70 (198)
Q Consensus        22 ~f~diF~~fFGgg~~~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G~~   70 (198)
                      .|+|+|++|||+++  +..+++||+|+.                   +++. +|.+|.|+           +.|+|+|.+
T Consensus       118 ~f~d~f~~~fg~~~--~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~  195 (389)
T PRK14295        118 GLGDVFGGLFNRGG--RRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQV  195 (389)
T ss_pred             chhhhhcccccCCC--CCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEE
Confidence            36788999997542  123356789853                   2322 49999886           579999987


Q ss_pred             EEEEeCCeeEEEEe-----------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEE
Q 039840           71 YHKQIGPGMFQQMT-----------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASF  138 (198)
Q Consensus        71 ~~~~~~~g~~~~~~-----------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i  138 (198)
                      ...+ | +|.++..           .++|+.|+|++++.+.++++|+||+|+++|++|+|+|+|++.+. ..+|||+|+|
T Consensus       196 ~~~~-g-~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i  273 (389)
T PRK14295        196 SRNS-G-GFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVV  273 (389)
T ss_pred             EEEe-c-ceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEE
Confidence            7665 3 2322222           68899999999999999999999999999999999999998765 5789999999


Q ss_pred             E------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          139 G------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       139 ~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      +      |+|+|+||+++++|||.         +|++|++++|+||||+.+.|++|++++||+++|
T Consensus       274 ~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~ir  330 (389)
T PRK14295        274 HVDPHPVFGRSGDNLTVTVPVTFP---------EAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLR  330 (389)
T ss_pred             EEecCCCEEEecCCEEEEEeecHH---------HHhCCCeEEEECCCCCEEEEEECCccCCCcEEE
Confidence            8      99999999999999999         999999999999999889999999999999875

>PRK14279 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.2e-32  Score=248.56  Aligned_cols=163  Identities=23%  Similarity=0.419  Sum_probs=136.2

Q ss_pred             hhhHHhhhcCCCCC-CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCceeEE
Q 039840           23 LVLVFDSFFGGGPT-EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRNEV   70 (198)
Q Consensus        23 f~diF~~fFGgg~~-~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G~~   70 (198)
                      |+|+|++|||++++ .+..+++||+|+.                   +++. .|..|+|+           +.|+|+|.+
T Consensus       123 f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~  202 (392)
T PRK14279        123 IGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVI  202 (392)
T ss_pred             hhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEE
Confidence            56888999975321 1223456789853                   2222 49999986           679999987


Q ss_pred             EEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEE
Q 039840           71 YHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKAS  137 (198)
Q Consensus        71 ~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~  137 (198)
                      ...+   |++++.+            .++|+.|+|.+++++.++++|+||||+++|++|+|+|+|++.++ ..+|||+|+
T Consensus       203 ~~~~---g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~  279 (392)
T PRK14279        203 SRNQ---GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVT  279 (392)
T ss_pred             EEEe---cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEE
Confidence            7655   3333222            78899999999999999999999999999999999999999886 468999999


Q ss_pred             EE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          138 FG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       138 i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+      |+|+|+||+++++|||.         +|++|++++|+||||+ +.|+||++++||+++|
T Consensus       280 i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~v~~ldg~-i~v~Ip~g~~~g~~ir  336 (392)
T PRK14279        280 VHVRPDKVFGRDGDDLTVTVPVSFT---------ELALGSTLSVPTLDGP-VGVKVPAGTADGRILR  336 (392)
T ss_pred             EEEecCCcceeecCcEEEEEEccHH---------HHcCCceEEEEcCCce-EEEEECCCCCCCCEEE
Confidence            98      99999999999999999         9999999999999998 9999999999999875

>PRK14290 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.1e-32  Score=244.63  Aligned_cols=167  Identities=23%  Similarity=0.376  Sum_probs=136.9

Q ss_pred             CCchhhHHhhhcCCC-C-----C--CCCCCCCCCCCeEE-------------------eee-eecCCCCc----------
Q 039840           20 VDLLVLVFDSFFGGG-P-----T--EEDERIAKGDDVWR-------------------EKN-VIKPAPGK----------   61 (198)
Q Consensus        20 ~~~f~diF~~fFGgg-~-----~--~~~~~~~kg~Di~~-------------------~~~-~c~~c~G~----------   61 (198)
                      +.+|+|+|++|||++ +     +  +..+.+++++|+++                   ++. +|..|+|+          
T Consensus        89 ~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C  168 (365)
T PRK14290         89 FSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITC  168 (365)
T ss_pred             ccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccC
Confidence            346889999999852 1     1  11112234788532                   222 48899886          


Q ss_pred             CCCCceeEEEEEEeCCeeEEEEe--------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCC
Q 039840           62 RSCNCRNEVYHKQIGPGMFQQMT--------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPII  127 (198)
Q Consensus        62 ~~C~G~G~~~~~~~~~g~~~~~~--------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~  127 (198)
                      +.|+|+|.+...+ .+|++++..              +++|+.|+|++++.+.+.++|.||||+.+|++|+|+|+|++ +
T Consensus       169 ~~C~G~G~~~~~~-~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~-~  246 (365)
T PRK14290        169 PTCHGTGQQRIVR-GQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQS-Y  246 (365)
T ss_pred             CCCCCcCEEEEEe-ccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccccCC-C
Confidence            6799999866554 456653321              78899999999999999999999999999999999999986 5


Q ss_pred             CCCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          128 DGEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       128 ~~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      ++.+|||+|+|+      |+|+|+||+++++|||.         +|++|++++|+|++|. ++|+||+++++|+++|
T Consensus       247 ~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~I~~~~g~-i~V~Ip~g~~~g~~ir  313 (365)
T PRK14290        247 GGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFP---------QAALGGEIEIKLFREK-YNLKIPEGTQPGEVLK  313 (365)
T ss_pred             CCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHH---------HHhCCCEEEEEcCCce-EEEEECCccCCCcEEE
Confidence            678999999998      99999999999999999         9999999999999996 9999999999999875

>PRK14294 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.1e-32  Score=245.52  Aligned_cols=165  Identities=27%  Similarity=0.497  Sum_probs=137.5

Q ss_pred             CchhhHHhhhcC-CCCC--CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCc
Q 039840           21 DLLVLVFDSFFG-GGPT--EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNC   66 (198)
Q Consensus        21 ~~f~diF~~fFG-gg~~--~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G   66 (198)
                      ++|.|+|++||| ++++  ++..+++||+|+.                   +++. .|..|.|+           +.|+|
T Consensus        90 ~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G  169 (366)
T PRK14294         90 SSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGG  169 (366)
T ss_pred             hhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCC
Confidence            457899999998 3221  1112356788843                   2322 48999885           67999


Q ss_pred             eeEEEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcc
Q 039840           67 RNEVYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGD  133 (198)
Q Consensus        67 ~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GD  133 (198)
                      +|.+...+   |++|+.+            .++|+.|+|.+++.+.+.++|.||||+++|++|+|+|+|++.+. +.+||
T Consensus       170 ~G~~~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GD  246 (366)
T PRK14294        170 SGQVTQSQ---GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGD  246 (366)
T ss_pred             eEEEEEEe---eeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCCCCCCCCc
Confidence            99876543   5665433            68899999999999999999999999999999999999999765 57999


Q ss_pred             eEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          134 LKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       134 Liv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+|+|+      |+|+|+||+++++|||.         +||+|++++|+||||+ +.|++|++++||+++|
T Consensus       247 l~v~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~ir  307 (366)
T PRK14294        247 LYVFLTVEPHEFFERDGNDVHCKVPISFV---------QAALGAQIEVPTLEGE-RELKIPKGTQPGDIFR  307 (366)
T ss_pred             EEEEEEEccCCcceecCCCEEEEEEeCHH---------HHhCCCeEEEECCCCc-EEEEECCCcCCCCEEE
Confidence            999998      99999999999999999         9999999999999997 7999999999999875

>PRK14300 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.9e-32  Score=244.23  Aligned_cols=166  Identities=22%  Similarity=0.421  Sum_probs=135.6

Q ss_pred             CchhhHHhhhcCCCCCCCC-CCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCcee
Q 039840           21 DLLVLVFDSFFGGGPTEED-ERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRN   68 (198)
Q Consensus        21 ~~f~diF~~fFGgg~~~~~-~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G   68 (198)
                      +.|.++|++|||+++.+.. ..+.||+|+.                   +++. .|..|.|+           +.|+|+|
T Consensus        93 ~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G  172 (372)
T PRK14300         93 DIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVG  172 (372)
T ss_pred             hhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeE
Confidence            3456666666654321111 1235788853                   2332 48999986           5799999


Q ss_pred             EEEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceE
Q 039840           69 EVYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLK  135 (198)
Q Consensus        69 ~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLi  135 (198)
                      .++..+   ||+|+.+            .++|+.|+|++++.+.+.++|.||+|+++|++|+++|+|++.+. ..+|||+
T Consensus       173 ~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~  249 (372)
T PRK14300        173 ATRMQQ---GFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLY  249 (372)
T ss_pred             EEEEee---ceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEE
Confidence            876543   5665433            78899999999999999999999999999999999999999754 5799999


Q ss_pred             EEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          136 ASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       136 v~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+|+      |+|+|+||+++++|+|.         +|++|++++|+||||+.++|+||++++||+++|
T Consensus       250 v~i~v~~h~~f~R~G~Dl~~~~~Isl~---------~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~ir  309 (372)
T PRK14300        250 VDIAIKPHDIYKVDGANLHCKLPISFV---------NAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLR  309 (372)
T ss_pred             EEEEECCCCCeEEecCCEEEEEecCHH---------HHhCCCEEEEecCCCCEEEEEECCccCCCcEEE
Confidence            9998      99999999999999999         999999999999999889999999999999875

>PRK14281 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.6e-32  Score=245.04  Aligned_cols=135  Identities=24%  Similarity=0.431  Sum_probs=123.5

Q ss_pred             eecCCCCc----------CCCCceeEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCC
Q 039840           54 VIKPAPGK----------RSCNCRNEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKG  110 (198)
Q Consensus        54 ~c~~c~G~----------~~C~G~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G  110 (198)
                      .|..|.|+          +.|+|+|.+... ++++|++++.+            +++|+.|+|.+++.+.++++|+||||
T Consensus       165 ~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G  244 (397)
T PRK14281        165 PCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVPAG  244 (397)
T ss_pred             cCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEecCCC
Confidence            48999886          679999987654 77888887654            68899999999999999999999999


Q ss_pred             CCCCcEEEEcccCCCCCC-CCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEE
Q 039840          111 MQDGQEVVFCEDGEPIID-GEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLV  183 (198)
Q Consensus       111 ~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~  183 (198)
                      +++|++|+|+|+|++.++ +.+|||+|+|+      |+|+|+||+++++|||.         |||+|++++|+||||+ +
T Consensus       245 ~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~tldg~-i  314 (397)
T PRK14281        245 VQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYP---------DLVLGTKVEVPTLDGA-V  314 (397)
T ss_pred             CCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHH---------HHhcCCeEEeecCCcc-E
Confidence            999999999999999886 57999999998      99999999999999999         9999999999999997 8


Q ss_pred             EEeeCCCCCCCeEEC
Q 039840          184 DISTKGITKPKEVRK  198 (198)
Q Consensus       184 ~i~~~~~t~pg~v~r  198 (198)
                      .|+||++++||+++|
T Consensus       315 ~v~ip~g~~~G~~~r  329 (397)
T PRK14281        315 KLTIPAGTQPETMLR  329 (397)
T ss_pred             EEEeCCccCCCcEEE
Confidence            999999999999875

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=1.3e-30  Score=236.25  Aligned_cols=133  Identities=26%  Similarity=0.410  Sum_probs=119.5

Q ss_pred             eecCCCCc-----------CCCCceeEEEEEEeCCeeEEEEe-----------cccccccCCeeEeeecEEEEEEecCCC
Q 039840           54 VIKPAPGK-----------RSCNCRNEVYHKQIGPGMFQQMT-----------EQVCEQCQNVKYEREGYFVTVDIEKGM  111 (198)
Q Consensus        54 ~c~~c~G~-----------~~C~G~G~~~~~~~~~g~~~~~~-----------~~~C~~C~G~g~~~~~~~l~V~IP~G~  111 (198)
                      +|..|+|+           +.|+|+|.++..+   |++++.+           .++|+.|+|.+++.+.++++|+||||+
T Consensus       158 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~  234 (382)
T PRK14291        158 PCEACGGTGYDPGSGEKVCPTCGGSGEIYQRG---GFFRISQTCPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPPGV  234 (382)
T ss_pred             cCCCCccccCCCCCCCccCCCCCCceEEEEec---ceEEEEecCCCCCCceEEccCCCCCCCCceEEeeeEEEEEeCCCC
Confidence            48999886           6799999876553   3444332           688999999999999999999999999


Q ss_pred             CCCcEEEEcccCCCCCC-CCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEE
Q 039840          112 QDGQEVVFCEDGEPIID-GEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVD  184 (198)
Q Consensus       112 ~~G~~I~l~G~G~~~~~-~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~  184 (198)
                      .+|++|+|+|+|++.+. +.+|||+|+|+      |+|+|+||+++++|||.         +|++|++++|+||||+.+.
T Consensus       235 ~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~---------eAl~G~~~~i~~ldG~~l~  305 (382)
T PRK14291        235 DNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVA---------EAVLGTELEVPLLDGKKEK  305 (382)
T ss_pred             CCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHH---------HHhCCCEEEEecCCCCEEE
Confidence            99999999999999774 68999999998      99999999999999999         9999999999999998899


Q ss_pred             EeeCCCCCCCeEEC
Q 039840          185 ISTKGITKPKEVRK  198 (198)
Q Consensus       185 i~~~~~t~pg~v~r  198 (198)
                      |++|++++||++++
T Consensus       306 V~Ip~g~~~G~~i~  319 (382)
T PRK14291        306 VKIPPGTKEGDKIR  319 (382)
T ss_pred             EEECCccCCCCEEE
Confidence            99999999999874

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=4.9e-31  Score=238.29  Aligned_cols=168  Identities=23%  Similarity=0.448  Sum_probs=140.6

Q ss_pred             CchhhHHhhhcCC-CC-C-----CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------C
Q 039840           21 DLLVLVFDSFFGG-GP-T-----EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------R   62 (198)
Q Consensus        21 ~~f~diF~~fFGg-g~-~-----~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~   62 (198)
                      .+|.|+|++|||+ ++ +     ++.+++.|++|++                   +++. .|..|.|+           +
T Consensus        85 ~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~  164 (374)
T PRK14293         85 GGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCS  164 (374)
T ss_pred             cchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCC
Confidence            3478999999973 11 1     0112345788853                   2322 48899885           5


Q ss_pred             CCCceeEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-
Q 039840           63 SCNCRNEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-  128 (198)
Q Consensus        63 ~C~G~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-  128 (198)
                      .|+|+|.+... +++||++++.+            +++|+.|.|.+++.+.+.++|+||||+++|++|+|+|+|++.+. 
T Consensus       165 ~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~  244 (374)
T PRK14293        165 TCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRG  244 (374)
T ss_pred             CCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCCC
Confidence            79999987655 78899987654            67899999999999999999999999999999999999998764 


Q ss_pred             CCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          129 GEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       129 ~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      ..+|||+|+|+      |+|+|+||+++++|||.         ||++|++++|+||||+ +.|++|++++||+++|
T Consensus       245 ~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~---------eAl~G~~~~i~~ldG~-~~i~ip~~~~~g~~~r  310 (374)
T PRK14293        245 GPPGDLYVYLFVKNDPEFRRDGINILSEIKISYL---------QAILGDTLEVDTVDGP-VELTIPAGTQPNTVLT  310 (374)
T ss_pred             CCCcCEEEEEEEeCCCccChhhhceEEEeccCHH---------HHhCCCEEEecCCCCC-EEEEeCCCCCCCCEEE
Confidence            56899999998      99999999999999999         9999999999999997 8999999999999875

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=8.5e-31  Score=236.36  Aligned_cols=165  Identities=22%  Similarity=0.351  Sum_probs=139.4

Q ss_pred             hhhHHhhhcCCCC-C--CCCCCCCCCCCeE-------------------Eee-eeecCCCCc------------CCCCce
Q 039840           23 LVLVFDSFFGGGP-T--EEDERIAKGDDVW-------------------REK-NVIKPAPGK------------RSCNCR   67 (198)
Q Consensus        23 f~diF~~fFGgg~-~--~~~~~~~kg~Di~-------------------~~~-~~c~~c~G~------------~~C~G~   67 (198)
                      ++|+|++|||+++ +  +..+++++|+|++                   +++ ..|..|.|+            +.|+|+
T Consensus        87 ~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~  166 (371)
T PRK14292         87 PMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGA  166 (371)
T ss_pred             hHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCc
Confidence            5699999998642 1  1123456788853                   232 249999886            469999


Q ss_pred             eEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcce
Q 039840           68 NEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDL  134 (198)
Q Consensus        68 G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDL  134 (198)
                      |.+..+ ++.+|++|+.+            .++|+.|.|++++.+.++++|.||+|+.+|++|+|+|+|++.+++. |||
T Consensus       167 G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~-GDL  245 (371)
T PRK14292        167 GAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGN-GDL  245 (371)
T ss_pred             cEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCCC-CCE
Confidence            987654 67778887654            6889999999999999999999999999999999999999987665 999


Q ss_pred             EEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          135 KASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       135 iv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      +|+|+      |+|+|+||+++++|+|.         +|++|++++|+||||+ +.|++|+++++|++++
T Consensus       246 ~v~i~v~~h~~f~r~g~dL~~~~~isl~---------eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~~  305 (371)
T PRK14292        246 YVHIEMEPHPELRREQEHLIYEARIGFA---------KAALGGQITVPTLDGP-QVIEVKPGTQHGDLHR  305 (371)
T ss_pred             EEEEEEecCCccccchhceeEEeccCHH---------HHhCCCeEEEECCCCC-EEEecCCCcCCCcEEE
Confidence            99998      99999999999999999         9999999999999998 5899999999999874

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=9.1e-30  Score=230.33  Aligned_cols=164  Identities=27%  Similarity=0.443  Sum_probs=138.8

Q ss_pred             chhhHHhhh-cCCCCCCCCCCCCCCCCeEE-------------------eee-eecCCCCc-----------CCCCceeE
Q 039840           22 LLVLVFDSF-FGGGPTEEDERIAKGDDVWR-------------------EKN-VIKPAPGK-----------RSCNCRNE   69 (198)
Q Consensus        22 ~f~diF~~f-FGgg~~~~~~~~~kg~Di~~-------------------~~~-~c~~c~G~-----------~~C~G~G~   69 (198)
                      +|.|+|++| ||+++   ..+++||+|+.+                   ++. .|..|.|+           +.|+|+|.
T Consensus        98 ~~~~~f~~~~fgg~~---~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~  174 (378)
T PRK14283         98 GIGNIFDMFGFGGGS---RHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQ  174 (378)
T ss_pred             chhhhccccccCCCC---CCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccE
Confidence            356778777 76432   223467888542                   222 48899885           67999998


Q ss_pred             EEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceE
Q 039840           70 VYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLK  135 (198)
Q Consensus        70 ~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLi  135 (198)
                      +.+. ++++|++++.+            .++|+.|+|++++.+.+.++|.||||+++|++++|+|+|++.+. ..+|||+
T Consensus       175 ~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLi  254 (378)
T PRK14283        175 VKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLY  254 (378)
T ss_pred             EEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEE
Confidence            7654 78888886554            67899999999999999999999999999999999999999765 5799999


Q ss_pred             EEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          136 ASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       136 v~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+|+      |+|+|+||+++++|||.         +|++|++++|+|||| .+.|++|++++||+++|
T Consensus       255 v~i~v~~~~~f~r~G~DL~~~~~Isl~---------eAl~G~~~~i~tldG-~i~v~ip~g~~~g~~~r  313 (378)
T PRK14283        255 VVIKVKPHKIFRREGANLYYEKPISFV---------QAALGDTVDVPTIDG-PVELKIPAGTQSGTTFR  313 (378)
T ss_pred             EEEEEEcCCCEEEecCCEEEEEecCHH---------HHhcCCeEEEEcCCc-eEEEEeCCCCCCCCEEE
Confidence            9998      99999999999999999         999999999999999 59999999999999875

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=8.3e-30  Score=231.08  Aligned_cols=135  Identities=21%  Similarity=0.353  Sum_probs=123.0

Q ss_pred             eecCCCCc-----------CCCCceeEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecC
Q 039840           54 VIKPAPGK-----------RSCNCRNEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEK  109 (198)
Q Consensus        54 ~c~~c~G~-----------~~C~G~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~  109 (198)
                      .|..|.|+           +.|+|+|.++.. ++++|++++.+            .++|+.|+|++++.+.+.++|+||+
T Consensus       156 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~  235 (386)
T PRK14289        156 PCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPA  235 (386)
T ss_pred             ccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCC
Confidence            49999886           679999987665 78888886543            6789999999999999999999999


Q ss_pred             CCCCCcEEEEcccCCCCCC-CCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcE
Q 039840          110 GMQDGQEVVFCEDGEPIID-GEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHL  182 (198)
Q Consensus       110 G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~  182 (198)
                      |+++|++|+++|+|++.+. ..+|||+|+|+      |+|+++||++++.|+|.         +|++|++++|+||||+ 
T Consensus       236 G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~---------eAl~G~~~~i~~ldg~-  305 (386)
T PRK14289        236 GVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVP---------TAALGGAVEVPTIDGK-  305 (386)
T ss_pred             CCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHH---------HHhCCCeEEeecCCce-
Confidence            9999999999999998764 57899999998      99999999999999999         9999999999999997 


Q ss_pred             EEEeeCCCCCCCeEEC
Q 039840          183 VDISTKGITKPKEVRK  198 (198)
Q Consensus       183 ~~i~~~~~t~pg~v~r  198 (198)
                      +.|+||+++++|+++|
T Consensus       306 i~v~ip~g~~~g~~~r  321 (386)
T PRK14289        306 AKVKIEAGTQPGKVLR  321 (386)
T ss_pred             EEEEECCccCCCcEEE
Confidence            9999999999999875

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=7.1e-27  Score=207.77  Aligned_cols=162  Identities=30%  Similarity=0.590  Sum_probs=137.5

Q ss_pred             HhhhcCCCCCCCCCCCCCCCCeE-------------------Eeee-eecCCCCc----------CCCCceeE-EEEEEe
Q 039840           27 FDSFFGGGPTEEDERIAKGDDVW-------------------REKN-VIKPAPGK----------RSCNCRNE-VYHKQI   75 (198)
Q Consensus        27 F~~fFGgg~~~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~----------~~C~G~G~-~~~~~~   75 (198)
                      |++||+.|+. +.+++.||.|+.                   ++++ +|..|+|+          +.|.|+|. +..+++
T Consensus        83 f~~~F~~g~~-~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~  161 (337)
T KOG0712|consen   83 FSQFFGFGGN-GGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQM  161 (337)
T ss_pred             HHHhccCCCc-CccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEec
Confidence            6666664432 233445599953                   2333 58999886          57999995 456699


Q ss_pred             CCeeEEEEe---------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE-
Q 039840           76 GPGMFQQMT---------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG-  139 (198)
Q Consensus        76 ~~g~~~~~~---------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~-  139 (198)
                      +|||.|+++               ++.|+.|.|.+++++.+.++|+|++|+.++++|.+.+++++.++..+||+++.+. 
T Consensus       162 gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl~i~~  241 (337)
T KOG0712|consen  162 GPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVLLIDQ  241 (337)
T ss_pred             cccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEEEecc
Confidence            999999887               6799999999999999999999999999999999999999998878999999998 


Q ss_pred             -----eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCC--CCCCCeEEC
Q 039840          140 -----LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKG--ITKPKEVRK  198 (198)
Q Consensus       140 -----F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~--~t~pg~v~r  198 (198)
                           |.|+++||+++.+|+|.         +|++|+.+.+.||||+.+.|++++  +++||++++
T Consensus       242 k~h~~F~Rrg~dL~~~~~i~l~---------eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~  298 (337)
T KOG0712|consen  242 KEHPGFDRRGSDLYRKLTISLV---------EALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKR  298 (337)
T ss_pred             cccccceecccccceeeecchh---------hccccceEEEEccCCceEEEecCCCceeChhHEEe
Confidence                 99999999999999999         999999999999999999998874  777777653

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.88  E-value=5.9e-22  Score=174.86  Aligned_cols=149  Identities=18%  Similarity=0.212  Sum_probs=112.3

Q ss_pred             CchhhHHhhhcCCCCC-CCCCCCCCCCCeEEeeee--ecCCCCcCCCCceeEEEEEEeCCeeEEEEecccccccCCeeEe
Q 039840           21 DLLVLVFDSFFGGGPT-EEDERIAKGDDVWREKNV--IKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYE   97 (198)
Q Consensus        21 ~~f~diF~~fFGgg~~-~~~~~~~kg~Di~~~~~~--c~~c~G~~~C~G~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~   97 (198)
                      .+|.|+|+.|||++++ ..+.+++||.|+.++..+  -..+.|.      .+....+          .   ..|.|.|.+
T Consensus        92 ~~~~~~f~~~~g~~~~~~~~~~~~kg~di~~~v~isLee~~~G~------~k~i~~~----------~---~~~~g~G~~  152 (306)
T PRK10266         92 EDFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEH------KRTISYN----------L---PVYNAFGMI  152 (306)
T ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCCCCceEEEEEEEHHHhcCCc------eEEEEEe----------c---ccccCCCeE
Confidence            4589999999985321 112334578998877644  2344441      1111110          0   112222221


Q ss_pred             --eecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeee
Q 039840           98 --REGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAV  168 (198)
Q Consensus        98 --~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al  168 (198)
                        ...+.++|+||+|+++|++|+++|+|++.++ ..+|||+|+|+      |+|+|+||+++++|||.         +|+
T Consensus       153 ~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~---------~al  223 (306)
T PRK10266        153 EQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPW---------EAA  223 (306)
T ss_pred             EEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHH---------HHh
Confidence              2236799999999999999999999999775 47899999998      99999999999999999         999


Q ss_pred             eecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          169 VGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       169 ~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      +|++++|+|+||+ +.|++|+++++|+++|
T Consensus       224 ~G~~~~i~~~~g~-v~v~ip~g~~~g~~~r  252 (306)
T PRK10266        224 LGAKVTVPTLKES-ILLTIPPGSQAGQRLR  252 (306)
T ss_pred             CCCEEEeeCCCcc-EEEEeCCCcCCCCEEE
Confidence            9999999999997 9999999999999875

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=8.3e-22  Score=172.94  Aligned_cols=132  Identities=28%  Similarity=0.350  Sum_probs=104.6

Q ss_pred             CchhhHHhhhcCCCC--CCC-------CCCCCCCCCeEEeeee--ecCCCCcCCCCceeEEEEEEeCCeeEEEEeccccc
Q 039840           21 DLLVLVFDSFFGGGP--TEE-------DERIAKGDDVWREKNV--IKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCE   89 (198)
Q Consensus        21 ~~f~diF~~fFGgg~--~~~-------~~~~~kg~Di~~~~~~--c~~c~G~~~C~G~G~~~~~~~~~g~~~~~~~~~C~   89 (198)
                      ++|+|+|++|||+++  ++.       ...+++|+|+.++..+  -..+.|.       ..   .+              
T Consensus        96 ~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~-------~~---~i--------------  151 (291)
T PRK14299         96 GDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGG-------EK---VV--------------  151 (291)
T ss_pred             CCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCC-------eE---EE--------------
Confidence            468899999998521  110       1234678898777643  3344442       00   00              


Q ss_pred             ccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE------eeecCCceEEEEEEeceecccccc
Q 039840           90 QCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLW  163 (198)
Q Consensus        90 ~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~  163 (198)
                             .-..+.++|+||||+++|++|+++|+|++.     |||+|+|+      |+|+|+||+++++|||.       
T Consensus       152 -------~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~-----GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~-------  212 (291)
T PRK14299        152 -------EVAGERLSVRIPPGVREGQVIRLAGKGRQG-----GDLYLVVRLLPHPVFRLEGDDLYATVDVPAP-------  212 (291)
T ss_pred             -------eeCCEEEEEecCCCcCCCcEEEECCCCCCC-----CCEEEEEEEcCCCCeEEECCEEEEEEecCHH-------
Confidence                   012367899999999999999999999873     99999998      99999999999999999       


Q ss_pred             ceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          164 DVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       164 ~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                        +|++|++++|+||||+ +.|++|++++||+++|
T Consensus       213 --eAl~G~~~~v~tldG~-~~v~ip~~~~~g~~~r  244 (291)
T PRK14299        213 --IAVVGGKVRVMTLDGP-VEVTIPPRTQAGRKLR  244 (291)
T ss_pred             --HHhCCCEEEEECCCCC-EEEEeCCCcCCCCEEE
Confidence              9999999999999997 9999999999999875

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.81  E-value=1.3e-19  Score=173.95  Aligned_cols=97  Identities=16%  Similarity=0.141  Sum_probs=90.1

Q ss_pred             cCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE------eeecCCceEEEEEEeceeccccccc
Q 039840           91 CQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWD  164 (198)
Q Consensus        91 C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~  164 (198)
                      +.|...+++.+.++|+||+|+++|++|+|+|+|++++++. |||+|+|+      |+|+|+||+++++|+|.        
T Consensus       687 g~G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~-GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~--------  757 (871)
T TIGR03835       687 GNTESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGC-GDLKVVFKVIPSNFFQIKNDGLHVAALVDPL--------  757 (871)
T ss_pred             CCCcceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCCC-CCEEEEEEEcCCCCeEEECCeEEEEEecCHH--------
Confidence            4555677888999999999999999999999999876654 99999998      99999999999999999        


Q ss_pred             eeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          165 VQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       165 ~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                       +||+|+++.|+||||+ +.|++|++|+||+++|
T Consensus       758 -EALLGgtIeIpTLDGr-VkLkIPpgTqpGqvLR  789 (871)
T TIGR03835       758 -VAYNGGIIDVFGPNKL-FNVRIPGGIKVNDQVI  789 (871)
T ss_pred             -HHhcCCEEEeeCCCCC-EEEeeCCCCCCCcEEE
Confidence             9999999999999998 9999999999999985

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.8e-15  Score=134.19  Aligned_cols=164  Identities=47%  Similarity=0.783  Sum_probs=138.5

Q ss_pred             hHHhhhcCC-----CCCCCCCCCCCCCCeEEee-------------------eeecCCCCcCCCCceeEEEEEEeCCeeE
Q 039840           25 LVFDSFFGG-----GPTEEDERIAKGDDVWREK-------------------NVIKPAPGKRSCNCRNEVYHKQIGPGMF   80 (198)
Q Consensus        25 diF~~fFGg-----g~~~~~~~~~kg~Di~~~~-------------------~~c~~c~G~~~C~G~G~~~~~~~~~g~~   80 (198)
                      |+|+.||+-     ++....+...+|.|+....                   .+-..|+|+..|+++-....++.++|++
T Consensus       101 ~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~~~~~~~~~~~~~~~~~g~~  180 (336)
T KOG0713|consen  101 DIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGTRKCNCRLEMFTQQEGPGRF  180 (336)
T ss_pred             chHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeecCcccccCChhhheeeccCCChh
Confidence            566666541     1222234467888865433                   2334567778999998888889999999


Q ss_pred             EEEecccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE------eeecCCceEEEEEEe
Q 039840           81 QQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG------LLREGNNLHATVTIT  154 (198)
Q Consensus        81 ~~~~~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~------F~R~G~DL~~~~~I~  154 (198)
                      |+.|+..|..|.+.++..+.+..++.+..++..+....+..+|.+.....+||+++.+.      |.|+++++++++.++
T Consensus       181 ~~~q~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~s  260 (336)
T KOG0713|consen  181 QMLQEAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTIS  260 (336)
T ss_pred             hhhhhhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcceecccCCceeeeEEecccceecCccchhhHHHHH
Confidence            99999999999999999999999999999999999999999998877789999999998      899999999999999


Q ss_pred             ceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEE
Q 039840          155 LVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVR  197 (198)
Q Consensus       155 l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~  197 (198)
                      +.         +|++|++.++.|+|++.+.++...++-|+..+
T Consensus       261 l~---------~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~  294 (336)
T KOG0713|consen  261 LE---------AALVGFEMEILHLDGHYVEVSRKKITWPGART  294 (336)
T ss_pred             HH---------HHHHHHHHHhhccchhhhhhhhhhccccchhh
Confidence            99         99999999999999998888888888887654

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=98.90  E-value=1.3e-09  Score=78.50  Aligned_cols=44  Identities=30%  Similarity=0.423  Sum_probs=37.5

Q ss_pred             ceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          146 NLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       146 DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      ||+++++|||.         ||++|++++|+||||+.+.|++|+++++|+++|
T Consensus         1 DL~~~~~I~l~---------~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~   44 (81)
T PF01556_consen    1 DLYCTIPISLK---------EALLGGTISIPTLDGKTIKIKIPPGTQPGQQLR   44 (81)
T ss_dssp             EEEEEEEEEHH---------HHHH-EEEEEE-TTS-EEEEEETST-STT-EEE
T ss_pred             CeEEEEEeCHH---------HHhCCCEEEEECCCCCEEEEeccCccCCCcEEe
Confidence            79999999999         999999999999999889999999999999875

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=4.7e-08  Score=86.22  Aligned_cols=95  Identities=17%  Similarity=0.320  Sum_probs=78.2

Q ss_pred             eecCCCCc-----------CCCCceeEEEEE-EeCCeeEEEEe---------cccccccCCeeEeeecEEEEEEecCCCC
Q 039840           54 VIKPAPGK-----------RSCNCRNEVYHK-QIGPGMFQQMT---------EQVCEQCQNVKYEREGYFVTVDIEKGMQ  112 (198)
Q Consensus        54 ~c~~c~G~-----------~~C~G~G~~~~~-~~~~g~~~~~~---------~~~C~~C~G~g~~~~~~~l~V~IP~G~~  112 (198)
                      .|..|.|.           ..|+|+|.+... +.++.+. +..         .+.|..|.|.+.+...+.+.+.+|+|..
T Consensus       166 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~  244 (288)
T KOG0715|consen  166 DCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILY-TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVR  244 (288)
T ss_pred             ccccccCcCcccccccccchhhhCcccccccccCCccee-ecccccccceeccchHHHhhcchhhhhheeEEeecCcccc
Confidence            58899876           679999976554 3333333 111         5669999999999999999999999999


Q ss_pred             CCcEEEEcccCCCCCCCCCcceEEEEE------eeecCCceEEEEEEece
Q 039840          113 DGQEVVFCEDGEPIIDGEPGDLKASFG------LLREGNNLHATVTITLV  156 (198)
Q Consensus       113 ~G~~I~l~G~G~~~~~~~~GDLiv~i~------F~R~G~DL~~~~~I~l~  156 (198)
                      ++.+|++.+.+..       ||++.+.      |+|+|.|++++..|++.
T Consensus       245 ~~~~l~~~~~~~~-------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~  287 (288)
T KOG0715|consen  245 SADTLRFAGHGND-------DLFVRLIVAKSPSFRREGKDILYDAIISFT  287 (288)
T ss_pred             cccEEEEecCCcc-------eEEEEEEeccCcccccccCccccccccccc
Confidence            9999999998754       8888887      99999999999999886

>PRK14282 chaperone protein DnaJ; Provisional

Probab=98.27  E-value=1e-06  Score=79.93  Aligned_cols=51  Identities=27%  Similarity=0.323  Sum_probs=42.6

Q ss_pred             cEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE------eeecCCceEEE
Q 039840          100 GYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG------LLREGNNLHAT  150 (198)
Q Consensus       100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~------F~R~G~DL~~~  150 (198)
                      .+.++|+||+|+++|++++++|+|.+.++ ..+|||+|+|+      |++++.+|+.+
T Consensus       302 G~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~  359 (369)
T PRK14282        302 GGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE  359 (369)
T ss_pred             CcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            46789999999999999999999998654 46899999998      77777766543

>PRK14290 chaperone protein DnaJ; Provisional

Probab=98.03  E-value=6.6e-06  Score=74.62  Aligned_cols=50  Identities=24%  Similarity=0.356  Sum_probs=42.0

Q ss_pred             EEEEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE------eeecCCceEEE
Q 039840          101 YFVTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG------LLREGNNLHAT  150 (198)
Q Consensus       101 ~~l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~------F~R~G~DL~~~  150 (198)
                      ..++|+||+|+++|++++++|+|.+.++. .+|||+|+|+      |++++.+|+.+
T Consensus       296 g~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~  352 (365)
T PRK14290        296 EKYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIRE  352 (365)
T ss_pred             ceEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            35899999999999999999999987664 6899999998      66666666554

>PRK14300 chaperone protein DnaJ; Provisional

Probab=97.98  E-value=2.3e-05  Score=71.29  Aligned_cols=40  Identities=23%  Similarity=0.342  Sum_probs=35.8

Q ss_pred             cEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840          100 GYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG  139 (198)
Q Consensus       100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~  139 (198)
                      .+.++|+||+|+++|++++++|+|.+.++ ..+|||+|+|+
T Consensus       291 g~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~  331 (372)
T PRK14300        291 GGKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIH  331 (372)
T ss_pred             CCEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEE
Confidence            35799999999999999999999998765 46899999998

>PRK14294 chaperone protein DnaJ; Provisional

Probab=97.94  E-value=1.4e-05  Score=72.50  Aligned_cols=48  Identities=27%  Similarity=0.358  Sum_probs=39.4

Q ss_pred             EEEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE------eeecCCceEE
Q 039840          102 FVTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG------LLREGNNLHA  149 (198)
Q Consensus       102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~------F~R~G~DL~~  149 (198)
                      .++|+||+|+++|++++++|+|.+.++. .+|||+|+|+      |+++..+|+.
T Consensus       291 ~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~  345 (366)
T PRK14294        291 ERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLT  345 (366)
T ss_pred             cEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence            3699999999999999999999987653 6899999998      5555555543

>PRK14291 chaperone protein DnaJ; Provisional

Probab=97.93  E-value=3e-05  Score=70.81  Aligned_cols=40  Identities=28%  Similarity=0.425  Sum_probs=35.5

Q ss_pred             cEEEEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE
Q 039840          100 GYFVTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG  139 (198)
Q Consensus       100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~  139 (198)
                      .+.++|+||+|+++|++++++|+|.+.++. .+|||+|+|+
T Consensus       301 G~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~  341 (382)
T PRK14291        301 GKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVH  341 (382)
T ss_pred             CCEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEE
Confidence            457899999999999999999999987653 6899999988

>PRK14284 chaperone protein DnaJ; Provisional

Probab=97.93  E-value=3.4e-05  Score=70.66  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=35.4

Q ss_pred             EEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840          101 YFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG  139 (198)
Q Consensus       101 ~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~  139 (198)
                      ..++|+||+|+++|++++|+|+|.+.++ ..+|||||+|+
T Consensus       306 ~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~  345 (391)
T PRK14284        306 GTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRIS  345 (391)
T ss_pred             cEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEE
Confidence            6789999999999999999999998765 46899999998

>PRK14279 chaperone protein DnaJ; Provisional

Probab=97.93  E-value=3.6e-05  Score=70.54  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=34.3

Q ss_pred             EEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE
Q 039840          102 FVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG  139 (198)
Q Consensus       102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~  139 (198)
                      .++|+||+|+++|++++++|+|.+.....+|||||+|+
T Consensus       320 ~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~~  357 (392)
T PRK14279        320 PVGVKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTVK  357 (392)
T ss_pred             eEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEE
Confidence            47999999999999999999999865556899999998

>PRK14285 chaperone protein DnaJ; Provisional

Probab=97.92  E-value=1.2e-05  Score=73.00  Aligned_cols=40  Identities=20%  Similarity=0.444  Sum_probs=35.6

Q ss_pred             cEEEEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE
Q 039840          100 GYFVTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG  139 (198)
Q Consensus       100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~  139 (198)
                      .+.++|+||+|+++|++++++|+|.+.++. ..|||+|+|+
T Consensus       292 G~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~  332 (365)
T PRK14285        292 SKKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIK  332 (365)
T ss_pred             CCEEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEE
Confidence            357899999999999999999999987664 4799999998

>PRK10767 chaperone protein DnaJ; Provisional

Probab=97.92  E-value=1e-05  Score=73.46  Aligned_cols=49  Identities=24%  Similarity=0.334  Sum_probs=41.0

Q ss_pred             EEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE------eeecCCceEEE
Q 039840          102 FVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG------LLREGNNLHAT  150 (198)
Q Consensus       102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~------F~R~G~DL~~~  150 (198)
                      .++|+||+|+++|++++++|+|.+.++ ..+|||||.|+      |++++.+|+.+
T Consensus       289 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~  344 (371)
T PRK10767        289 RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEE  344 (371)
T ss_pred             cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999999998665 46899999998      66666666554

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=4.4e-05  Score=69.58  Aligned_cols=37  Identities=27%  Similarity=0.407  Sum_probs=34.1

Q ss_pred             EEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE
Q 039840          103 VTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG  139 (198)
Q Consensus       103 l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~  139 (198)
                      ++|+||||+++|++++|+|+|.+...+ ..|||||.+.
T Consensus       292 ~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~  329 (371)
T COG0484         292 VKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVK  329 (371)
T ss_pred             EEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEE
Confidence            899999999999999999999997664 6799999998

>PRK14295 chaperone protein DnaJ; Provisional

Probab=97.89  E-value=3.5e-05  Score=70.55  Aligned_cols=40  Identities=30%  Similarity=0.397  Sum_probs=35.7

Q ss_pred             cEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE
Q 039840          100 GYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG  139 (198)
Q Consensus       100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~  139 (198)
                      .+.++|+||+|+++|++++++|+|.+..++.+|||||+|+
T Consensus       312 G~~~~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~  351 (389)
T PRK14295        312 GPPVTVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVE  351 (389)
T ss_pred             CCEEEEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEE
Confidence            4579999999999999999999999865556899999988

>PRK14298 chaperone protein DnaJ; Provisional

Probab=97.89  E-value=1.2e-05  Score=73.22  Aligned_cols=48  Identities=23%  Similarity=0.278  Sum_probs=39.8

Q ss_pred             EEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE------eeecCCceEEE
Q 039840          103 VTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG------LLREGNNLHAT  150 (198)
Q Consensus       103 l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~------F~R~G~DL~~~  150 (198)
                      ++|+||+|+++|++++++|+|.+.++ ..+|||||.|+      +++++.+|+.+
T Consensus       293 i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~  347 (377)
T PRK14298        293 VKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLRE  347 (377)
T ss_pred             EEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            78999999999999999999998665 35899999998      56666655544

>PRK14278 chaperone protein DnaJ; Provisional

Probab=97.86  E-value=6.7e-05  Score=68.44  Aligned_cols=40  Identities=28%  Similarity=0.390  Sum_probs=35.6

Q ss_pred             cEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840          100 GYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG  139 (198)
Q Consensus       100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~  139 (198)
                      ...++|+||+|+++|++++++|+|.+.++ ..+|||||+|+
T Consensus       289 ~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~  329 (378)
T PRK14278        289 DGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVE  329 (378)
T ss_pred             CCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEE
Confidence            46789999999999999999999998655 46899999998

>PRK14276 chaperone protein DnaJ; Provisional

Probab=97.82  E-value=6.9e-05  Score=68.39  Aligned_cols=38  Identities=26%  Similarity=0.455  Sum_probs=34.1

Q ss_pred             EEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840          102 FVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG  139 (198)
Q Consensus       102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~  139 (198)
                      .++|+||+|+++|++++++|+|.+.++ ..+|||||+|+
T Consensus       297 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~  335 (380)
T PRK14276        297 DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVN  335 (380)
T ss_pred             cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEE
Confidence            379999999999999999999998765 36799999998

>PRK14301 chaperone protein DnaJ; Provisional

Probab=97.82  E-value=5.9e-05  Score=68.70  Aligned_cols=37  Identities=35%  Similarity=0.554  Sum_probs=33.9

Q ss_pred             EEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE
Q 039840          103 VTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG  139 (198)
Q Consensus       103 l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~  139 (198)
                      ++|+||+|+++|++++|+|+|.+.++. .+|||||+|+
T Consensus       292 i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~  329 (373)
T PRK14301        292 VTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVS  329 (373)
T ss_pred             EEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEE
Confidence            899999999999999999999987653 5899999998

>PRK14297 chaperone protein DnaJ; Provisional

Probab=97.79  E-value=8.1e-05  Score=67.88  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=33.9

Q ss_pred             EEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840          102 FVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG  139 (198)
Q Consensus       102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~  139 (198)
                      .++|+||+|+++|++++++|+|.+..+ ..+|||||.|+
T Consensus       299 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~  337 (380)
T PRK14297        299 EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVI  337 (380)
T ss_pred             cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEE
Confidence            479999999999999999999998655 36899999998

>PRK14299 chaperone protein DnaJ; Provisional

Probab=97.75  E-value=2.2e-05  Score=69.11  Aligned_cols=57  Identities=30%  Similarity=0.424  Sum_probs=49.3

Q ss_pred             cceEEEEE-eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          132 GDLKASFG-LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       132 GDLiv~i~-F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      +|++..+. +.|+|+||++++.|||.         ||++|++++| +++|+.++|+||+++++|+++|
T Consensus       116 g~~~~~~~~~~~~g~dl~~~l~isL~---------ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir  173 (291)
T PRK14299        116 GDLFGSVGRRARKGRDLEAELPLTLE---------EAYRGGEKVV-EVAGERLSVRIPPGVREGQVIR  173 (291)
T ss_pred             ccccccccCCCCCCCCEEEEEEecHH---------HHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEE
Confidence            56654333 56789999999999999         9999999998 7899889999999999999875

>PRK14286 chaperone protein DnaJ; Provisional

Probab=97.73  E-value=9.7e-05  Score=67.27  Aligned_cols=40  Identities=23%  Similarity=0.312  Sum_probs=35.3

Q ss_pred             cEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840          100 GYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG  139 (198)
Q Consensus       100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~  139 (198)
                      .+.++|+||+|+++|++++++|+|.+.++ ..+|||||.|+
T Consensus       296 G~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~  336 (372)
T PRK14286        296 GKKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVK  336 (372)
T ss_pred             CCEEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEE
Confidence            45689999999999999999999998665 35799999998

>PRK14280 chaperone protein DnaJ; Provisional

Probab=97.73  E-value=0.00013  Score=66.56  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=33.8

Q ss_pred             EEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840          102 FVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG  139 (198)
Q Consensus       102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~  139 (198)
                      .++|+||+|+++|++++++|+|.+..+ ..+|||+|+|+
T Consensus       294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~  332 (376)
T PRK14280        294 KVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVR  332 (376)
T ss_pred             eEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEE
Confidence            379999999999999999999998654 36899999998

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.68  E-value=3.9e-05  Score=53.32  Aligned_cols=35  Identities=29%  Similarity=0.521  Sum_probs=21.9

Q ss_pred             CCCCceeEEEEE-EeCCeeEEEEecccccccCCeeEee
Q 039840           62 RSCNCRNEVYHK-QIGPGMFQQMTEQVCEQCQNVKYER   98 (198)
Q Consensus        62 ~~C~G~G~~~~~-~~~~g~~~~~~~~~C~~C~G~g~~~   98 (198)
                      +.|+|+|++... +.+++++|+  ...|+.|+|.|.+.
T Consensus        19 ~~C~G~G~~~~~~~~~~~~~~~--~~~C~~C~G~G~~i   54 (66)
T PF00684_consen   19 PQCNGSGQVTRRQQTPGGVFQM--QQTCPKCGGTGKII   54 (66)
T ss_dssp             TTSSSSSEEEEEEESSSTTEEE--EEE-TTTSSSSEE-
T ss_pred             cCCCCeeEEEEEEeCCCeEEEE--EEECCCCcceeeEE
Confidence            679999988765 434433333  34588888877763

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14288 chaperone protein DnaJ; Provisional

Probab=97.67  E-value=0.00013  Score=66.29  Aligned_cols=40  Identities=20%  Similarity=0.296  Sum_probs=35.3

Q ss_pred             cEEEEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE
Q 039840          100 GYFVTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG  139 (198)
Q Consensus       100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~  139 (198)
                      .+.++|+||+++++|++++++|+|.+.++. ..|||+|.|+
T Consensus       284 G~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~  324 (369)
T PRK14288        284 GDELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQ  324 (369)
T ss_pred             CCEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEE
Confidence            346899999999999999999999987664 4699999998

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=97.65  E-value=6.7e-05  Score=53.89  Aligned_cols=40  Identities=33%  Similarity=0.527  Sum_probs=33.1

Q ss_pred             cEEEEEEecCCCCCCcEEEEcccCCCCCC-C-CCcceEEEEE
Q 039840          100 GYFVTVDIEKGMQDGQEVVFCEDGEPIID-G-EPGDLKASFG  139 (198)
Q Consensus       100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~-~~GDLiv~i~  139 (198)
                      .+.++|+||+|+++|++++++|+|.+... . ..|||+|.++
T Consensus        26 g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~   67 (81)
T PF01556_consen   26 GKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFE   67 (81)
T ss_dssp             S-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEE
T ss_pred             CCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEE
Confidence            47899999999999999999999997655 3 6999999998

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=97.64  E-value=0.00018  Score=64.91  Aligned_cols=38  Identities=29%  Similarity=0.408  Sum_probs=34.5

Q ss_pred             EEEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE
Q 039840          102 FVTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG  139 (198)
Q Consensus       102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~  139 (198)
                      .++|.||+|+++|++++++|+|.+.+++ .+|||||.|+
T Consensus       294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~  332 (354)
T TIGR02349       294 DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVK  332 (354)
T ss_pred             eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEE
Confidence            5899999999999999999999987664 6899999998

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14281 chaperone protein DnaJ; Provisional

Probab=97.64  E-value=0.00014  Score=66.71  Aligned_cols=38  Identities=18%  Similarity=0.160  Sum_probs=34.0

Q ss_pred             EEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840          102 FVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG  139 (198)
Q Consensus       102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~  139 (198)
                      .++|+||+|+++|++++++|+|.+.++ ..+|||||+|+
T Consensus       313 ~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~  351 (397)
T PRK14281        313 AVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVN  351 (397)
T ss_pred             cEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEE
Confidence            479999999999999999999998655 36899999998

>PRK14287 chaperone protein DnaJ; Provisional

Probab=97.64  E-value=0.00018  Score=65.53  Aligned_cols=38  Identities=24%  Similarity=0.347  Sum_probs=34.0

Q ss_pred             EEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840          102 FVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG  139 (198)
Q Consensus       102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~  139 (198)
                      .++|+||+|+++|++++++|+|.+.++ ..+|||||+|+
T Consensus       289 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~  327 (371)
T PRK14287        289 KVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVR  327 (371)
T ss_pred             CEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEE
Confidence            379999999999999999999998665 35899999998

>PRK14289 chaperone protein DnaJ; Provisional

Probab=97.60  E-value=0.00018  Score=65.66  Aligned_cols=39  Identities=28%  Similarity=0.378  Sum_probs=34.7

Q ss_pred             EEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840          101 YFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG  139 (198)
Q Consensus       101 ~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~  139 (198)
                      ..++|.||+|+++|++++++|+|.+.++ ..+|||||+|+
T Consensus       304 g~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~  343 (386)
T PRK14289        304 GKAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVS  343 (386)
T ss_pred             ceEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEE
Confidence            3489999999999999999999998765 46899999998

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=97.53  E-value=9.5e-05  Score=61.62  Aligned_cols=48  Identities=15%  Similarity=0.326  Sum_probs=41.0

Q ss_pred             CCCCceeEEEEEEeCCeeEEEEecccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcc
Q 039840           62 RSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCE  121 (198)
Q Consensus        62 ~~C~G~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G  121 (198)
                      +.|+|+|+++..           .++|+.|+|.|+++.++...+++ .|+.+|++|++.-
T Consensus       103 ~~C~G~G~~i~~-----------~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~~  150 (186)
T TIGR02642       103 PRCRGTGLIQRR-----------QRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLKD  150 (186)
T ss_pred             CCCCCeeEEecC-----------CCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHHH
Confidence            568888886642           25799999999999999999999 9999999999764

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14283 chaperone protein DnaJ; Provisional

Probab=97.53  E-value=0.00033  Score=63.89  Aligned_cols=38  Identities=24%  Similarity=0.346  Sum_probs=34.1

Q ss_pred             EEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840          102 FVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG  139 (198)
Q Consensus       102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~  139 (198)
                      .++|.||+|+++|++++++|+|.+.++ ..+|||||+|+
T Consensus       297 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~  335 (378)
T PRK14283        297 PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVK  335 (378)
T ss_pred             eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEE
Confidence            589999999999999999999998654 46899999998

>PRK14277 chaperone protein DnaJ; Provisional

Probab=97.49  E-value=0.00039  Score=63.62  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=33.2

Q ss_pred             EEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840          103 VTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG  139 (198)
Q Consensus       103 l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~  139 (198)
                      ++|.||+|+++|++++++|+|.+.++ ...|||||+|+
T Consensus       307 ~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~  344 (386)
T PRK14277        307 VKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVY  344 (386)
T ss_pred             EEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEE
Confidence            79999999999999999999998655 35799999998

>PRK14292 chaperone protein DnaJ; Provisional

Probab=97.46  E-value=0.00034  Score=63.55  Aligned_cols=37  Identities=22%  Similarity=0.441  Sum_probs=33.2

Q ss_pred             EEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840          103 VTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG  139 (198)
Q Consensus       103 l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~  139 (198)
                      .+|+||+|+++|++++++|+|.+.++ ..+|||||+|+
T Consensus       290 ~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~  327 (371)
T PRK14292        290 QVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYE  327 (371)
T ss_pred             EEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEE
Confidence            47999999999999999999998765 46899999998

>PRK14293 chaperone protein DnaJ; Provisional

Probab=97.42  E-value=0.00017  Score=65.57  Aligned_cols=48  Identities=21%  Similarity=0.299  Sum_probs=39.1

Q ss_pred             EEEEecCCCCCCcEEEEcccCCCCCCC--CCcceEEEEE------eeecCCceEEE
Q 039840          103 VTVDIEKGMQDGQEVVFCEDGEPIIDG--EPGDLKASFG------LLREGNNLHAT  150 (198)
Q Consensus       103 l~V~IP~G~~~G~~I~l~G~G~~~~~~--~~GDLiv~i~------F~R~G~DL~~~  150 (198)
                      ++|+||+++++|++++++|+|.+.++.  ..|||||.|+      +++++.+|+.+
T Consensus       295 ~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~  350 (374)
T PRK14293        295 VELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEK  350 (374)
T ss_pred             EEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            789999999999999999999986653  4799999998      55566555443

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=97.28  E-value=0.0011  Score=61.62  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=34.7

Q ss_pred             cEEEEEEecCC--CCCCcEEEEcccCCCCCC--CCCcceEEEEE
Q 039840          100 GYFVTVDIEKG--MQDGQEVVFCEDGEPIID--GEPGDLKASFG  139 (198)
Q Consensus       100 ~~~l~V~IP~G--~~~G~~I~l~G~G~~~~~--~~~GDLiv~i~  139 (198)
                      .+.++|+||+|  +++|++++|+|+|.+..+  ...|||||.|+
T Consensus       300 G~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~  343 (421)
T PTZ00037        300 GRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFE  343 (421)
T ss_pred             CCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEE
Confidence            45689999999  999999999999998654  25799999998

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.0021  Score=54.23  Aligned_cols=91  Identities=24%  Similarity=0.473  Sum_probs=77.1

Q ss_pred             eeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE------eeecCCceEEE--EEEeceeccccccceeee
Q 039840           97 EREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG------LLREGNNLHAT--VTITLVKLSCGLWDVQAV  168 (198)
Q Consensus        97 ~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~------F~R~G~DL~~~--~~I~l~~~~~~~~~~~Al  168 (198)
                      ........+.+++++..|+.+..+.+|+..++..+-++++.+.      |.+.+++|...  ..|++.         +|+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~---------~~~  266 (306)
T KOG0714|consen  196 SSRSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLK---------EAL  266 (306)
T ss_pred             cCccceeEEeccCCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceecccceeehh---------hhh
Confidence            4567788999999999999999999999877655666766666      88899999999  999999         999


Q ss_pred             eecEEEEeCCCCcEEEEeeC-CCCCCCeE
Q 039840          169 VGFEKTIKHLDGHLVDISTK-GITKPKEV  196 (198)
Q Consensus       169 ~G~~~~i~~ldG~~~~i~~~-~~t~pg~v  196 (198)
                      +|....++++++..+.+.+. ...+|+..
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (306)
T KOG0714|consen  267 LGVTVFVPTLDGRSYSLSINKDLIEPGEE  295 (306)
T ss_pred             cCcceeeecccCccccCcccccccCCCce
Confidence            99999999999987777766 66666654

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.72  E-value=0.0033  Score=48.41  Aligned_cols=44  Identities=20%  Similarity=0.347  Sum_probs=27.2

Q ss_pred             eeecCCCCc-----CCCCceeEEEEEEeCCeeEEEEe---------cccccccCCeeEee
Q 039840           53 NVIKPAPGK-----RSCNCRNEVYHKQIGPGMFQQMT---------EQVCEQCQNVKYER   98 (198)
Q Consensus        53 ~~c~~c~G~-----~~C~G~G~~~~~~~~~g~~~~~~---------~~~C~~C~G~g~~~   98 (198)
                      ..|..|+|+     +.|+|+|.+..++ ++ ++++.+         +..|+.|+|++++.
T Consensus        42 v~C~~C~GsG~~~C~~C~G~G~v~~~~-~g-~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~   99 (111)
T PLN03165         42 QPCFPCSGTGAQVCRFCVGSGNVTVEL-GG-GEKEVSKCINCDGAGSLTCTTCQGSGIQP   99 (111)
T ss_pred             CCCCCCCCCCCcCCCCCcCcCeEEEEe-CC-cEEEEEECCCCCCcceeeCCCCCCCEEEe
Confidence            359999988     7799999877544 33 222211         34466666655553

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=96.22  E-value=0.0055  Score=54.32  Aligned_cols=48  Identities=13%  Similarity=0.259  Sum_probs=39.7

Q ss_pred             ecCCceEEEEEEeceeccccccceeeeeecEEEE----eCCC--C-------cEEEEeeCCCCCCCeEEC
Q 039840          142 REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTI----KHLD--G-------HLVDISTKGITKPKEVRK  198 (198)
Q Consensus       142 R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i----~~ld--G-------~~~~i~~~~~t~pg~v~r  198 (198)
                      ++|.||++++.|||.         ||+.|+.++|    ++++  |       +.+.|++|+++++|+++|
T Consensus       115 ~kg~di~~~v~isLe---------e~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~  175 (306)
T PRK10266        115 ARGHDIEIEVAVFLE---------ETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIR  175 (306)
T ss_pred             CCCCceEEEEEEEHH---------HhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEE
Confidence            468899999999999         9999995544    5554  3       468999999999999875

>PRK14296 chaperone protein DnaJ; Provisional

Probab=95.82  E-value=0.016  Score=52.88  Aligned_cols=37  Identities=14%  Similarity=0.278  Sum_probs=32.5

Q ss_pred             EEEEecCCCCCCcEEEEcccCCCCC-C-CCCcceEEEEE
Q 039840          103 VTVDIEKGMQDGQEVVFCEDGEPII-D-GEPGDLKASFG  139 (198)
Q Consensus       103 l~V~IP~G~~~G~~I~l~G~G~~~~-~-~~~GDLiv~i~  139 (198)
                      ++|+||+++++|++++|+|+|.+.. + ...|||||.|+
T Consensus       302 ~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~  340 (372)
T PRK14296        302 IKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVN  340 (372)
T ss_pred             EEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEE
Confidence            8999999999999999999999743 2 35799999998

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=95.22  E-value=0.033  Score=55.35  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=33.2

Q ss_pred             EEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE
Q 039840          103 VTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG  139 (198)
Q Consensus       103 l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~  139 (198)
                      ++|+||+|+++|++++++|+|.+..+..+|||||.|.
T Consensus       774 VkLkIPpgTqpGqvLRIkGKGMP~~~~~RGDLyV~f~  810 (871)
T TIGR03835       774 FNVRIPGGIKVNDQVIFKDLGLTKTKYDKGSLIVHLY  810 (871)
T ss_pred             EEEeeCCCCCCCcEEEECCCCCCCCCCCCCCEEEEEE
Confidence            7999999999999999999999743346899999998

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=88.49  E-value=0.42  Score=48.08  Aligned_cols=77  Identities=22%  Similarity=0.389  Sum_probs=40.9

Q ss_pred             eccCCCCcCCCCchhhHHhhhcCCCCCCCCCCCCCCCCeEEeee--eecCCCCcCCCCceeEEEEE-EeCCeeEEEEecc
Q 039840           10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREKN--VIKPAPGKRSCNCRNEVYHK-QIGPGMFQQMTEQ   86 (198)
Q Consensus        10 ~~~~~~~f~~~~~f~diF~~fFGgg~~~~~~~~~kg~Di~~~~~--~c~~c~G~~~C~G~G~~~~~-~~~~g~~~~~~~~   86 (198)
                      =||+|+-|-.  -|++| .++|.+-+ ....+..+...++++..  .|++|.|      .|.+.+. ..-|-.+     -
T Consensus       690 pRSNPATYtg--~Fd~I-R~lFA~tp-eAK~rGyk~grFSFNvkGGRCe~C~G------dG~ikIeM~FLpdVy-----v  754 (935)
T COG0178         690 PRSNPATYTG--VFDDI-RELFAGTP-EAKARGYKPGRFSFNVKGGRCEACQG------DGVIKIEMHFLPDVY-----V  754 (935)
T ss_pred             CCCCccchhc--chHHH-HHHHhcCh-HHHHcCCCcccccccCCCcCCccccC------CceEEEEeccCCCce-----e
Confidence            4889887644  23333 33443211 00111223334555543  4877655      6766543 3333332     4


Q ss_pred             cccccCCeeEeeecE
Q 039840           87 VCEQCQNVKYEREGY  101 (198)
Q Consensus        87 ~C~~C~G~g~~~~~~  101 (198)
                      +|+.|+|+.+-++.-
T Consensus       755 ~CevC~GkRYn~EtL  769 (935)
T COG0178         755 PCEVCHGKRYNRETL  769 (935)
T ss_pred             eCCCcCCcccccceE
Confidence            799999999987653

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=81.28  E-value=0.72  Score=44.83  Aligned_cols=17  Identities=18%  Similarity=0.177  Sum_probs=11.9

Q ss_pred             eecCCCCc----------CCCCceeEE
Q 039840           54 VIKPAPGK----------RSCNCRNEV   70 (198)
Q Consensus        54 ~c~~c~G~----------~~C~G~G~~   70 (198)
                      .|+.|+|+          +.|+|+|.+
T Consensus         4 ~C~~C~g~G~i~v~~e~c~vc~gtG~~   30 (715)
T COG1107           4 KCPECGGKGKIVVGEEECPVCHGTGFS   30 (715)
T ss_pred             cccccCCCceEeeeeeecccccccccc
Confidence            47777765          567788765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
1nlt_A	248	The Crystal Structure Of Hsp40 Ydj1 Length = 248		6e-04

>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 88  CEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDL------KASFGLL 141
           C+ C   K E E   + V +E GM+DGQ +VF  + +   D  PGD+      +      
Sbjct: 99  CKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFK 158
Query: 142 REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDIS 186
           R+G++L     I L         + A+ G E  ++H+ G  + + 
Sbjct: 159 RDGDDLVYEAEIDL---------LTAIAGGEFALEHVSGDWLKVG 194

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	3e-25
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	3e-23
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	7e-21
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	2e-19
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	3e-10
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	9e-05

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181

 Score = 95.4 bits (238), Expect = 3e-25
 Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 15/117 (12%)

Query: 88  CEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDL------KASFGLL 141
                      E   +T++++KG ++G ++ F ++G+   +  P D+      K      
Sbjct: 30  RLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFK 89

Query: 142 REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198
           R+G+++     I+L          +A+ G    +  LDG  + +  K + +P   RK
Sbjct: 90  RDGSDVIYPARISL---------REALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRK 137

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180

 Score = 90.4 bits (225), Expect = 3e-23
 Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 20/120 (16%)

Query: 88  CEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLK--------ASF 138
            ++    K   E   V V+I+ G +DG ++ +  +G+    G  PGDL           F
Sbjct: 29  RKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRF 88

Query: 139 GLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198
              R+  +L   VTI L         V+A+ GF   +  LD   + I  K I  PK  + 
Sbjct: 89  --TRDDCHLIMKVTIPL---------VRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKI 137

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170

 Score = 83.8 bits (208), Expect = 7e-21
 Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 16/115 (13%)

Query: 91  CQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDL------KASFGLLRE 143
            +      E   + + ++ G + G ++ +   G+     G    L      K+     R+
Sbjct: 26  RKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRD 85

Query: 144 GNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198
           G++L  T+ ++           ++++GF KTI+ +DG  + +S     +P +   
Sbjct: 86  GDDLIYTLPLSF---------KESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTST 131

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score = 81.9 bits (203), Expect = 2e-19
 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 35/153 (22%)

Query: 70  VYHKQIGPGMFQQMTEQVCEQCQNV----------------KYEREGYFVTVDIEKGMQD 113
              +Q+GP + +   +  C+ C                   K E E   + V +E GM+D
Sbjct: 67  FVTRQMGPMIQR--FQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKD 124

Query: 114 GQEVVFCEDGEPIIDGEPGDL------KASFGLLREGNNLHATVTITLVKLSCGLWDVQA 167
           GQ +VF  + +   D  PGD+      +      R+G++L     I L         + A
Sbjct: 125 GQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDL---------LTA 175

Query: 168 VVGFEKTIKHLDGHLVDISTK--GITKPKEVRK 198
           + G E  ++H+ G  + +      +  P   + 
Sbjct: 176 IAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKV 208

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 142 REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTK--GITKPKEVRK 198
           R+G++L     I L+          A+ G E  ++H+ G  + +      +  P   + 
Sbjct: 4   RDGDDLVYEAEIDLL---------TAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKV 53

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 16/103 (15%)

Query: 85  EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEP-IIDGEPGDLKASFGLL-- 141
                    +        + V I  G+ DGQ +     G P    G  GDL     +   
Sbjct: 165 NLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPH 224

Query: 142 ----REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDG 180
                 G+NL   + +            +A +G + T+  L  
Sbjct: 225 PLFDIVGHNLEIVLPLAP---------WEAALGAKVTVPTLKE 258

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	100.0
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.96
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	99.96
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	99.92
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	99.9
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	99.35
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.3
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	98.26
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	97.81
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.69
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	97.6
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	96.98
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	96.93
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	96.91
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	96.65
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	96.59
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	92.97
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	86.45

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=100.00  E-value=1.6e-35  Score=253.13  Aligned_cols=135  Identities=29%  Similarity=0.525  Sum_probs=124.7

Q ss_pred             eecCCCCc----------CCCCceeEEEE-EEeCCeeEEEEe---------------cccccccCCeeEeeecEEEEEEe
Q 039840           54 VIKPAPGK----------RSCNCRNEVYH-KQIGPGMFQQMT---------------EQVCEQCQNVKYEREGYFVTVDI  107 (198)
Q Consensus        54 ~c~~c~G~----------~~C~G~G~~~~-~~~~~g~~~~~~---------------~~~C~~C~G~g~~~~~~~l~V~I  107 (198)
                      .|..|+|+          +.|+|+|+++. ++++| |+|+++               +++|+.|+|.+++++.++++|+|
T Consensus        40 ~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~I  118 (248)
T 1nlt_A           40 LCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHV  118 (248)
T ss_dssp             ECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEE
T ss_pred             eCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEeeeEEEEEEE
Confidence            59999987          57999998654 47888 776665               68899999999999999999999


Q ss_pred             cCCCCCCcEEEEcccCCCCCCCCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCc
Q 039840          108 EKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGH  181 (198)
Q Consensus       108 P~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~  181 (198)
                      |||+++|++|+|+|+|++.+++.+|||||+|+      |+|+|+|||++++|||.         |||+|++++|+||||+
T Consensus       119 p~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAllG~~i~v~tldG~  189 (248)
T 1nlt_A          119 EPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLL---------TAIAGGEFALEHVSGD  189 (248)
T ss_dssp             CTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHH---------HHHHCBCCEEECSSSC
T ss_pred             CCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHH---------HHhcCCEEEEeCCCCC
Confidence            99999999999999999988889999999998      99999999999999999         9999999999999998


Q ss_pred             EEEEeeCCC--CCCCeEEC
Q 039840          182 LVDISTKGI--TKPKEVRK  198 (198)
Q Consensus       182 ~~~i~~~~~--t~pg~v~r  198 (198)
                      .+.|++|++  ||||+++|
T Consensus       190 ~~~i~ip~g~vt~~g~~~r  208 (248)
T 1nlt_A          190 WLKVGIVPGEVIAPGMRKV  208 (248)
T ss_dssp             EEECCBCTTTTCSTTCEEE
T ss_pred             EEEEEeCCCCeeCCCeEEE
Confidence            899999987  99999875

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.96  E-value=1.2e-28  Score=218.35  Aligned_cols=150  Identities=19%  Similarity=0.232  Sum_probs=101.7

Q ss_pred             chhhHHhhhcCCCCC-CCCCCCCCCCCeEEeeee--ecCCCCcCCCCceeEEEEEEeCCeeEEEEecccccccCCeeEee
Q 039840           22 LLVLVFDSFFGGGPT-EEDERIAKGDDVWREKNV--IKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYER   98 (198)
Q Consensus        22 ~f~diF~~fFGgg~~-~~~~~~~kg~Di~~~~~~--c~~c~G~~~C~G~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~   98 (198)
                      +|+|||++|||++++ ++.+++++|+|+.++..+  -+...|      ..+.+..+          ...| .+.|...++
T Consensus       116 ~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G------~~k~i~i~----------~~v~-~g~G~v~~~  178 (329)
T 3lz8_A          116 DFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAE------QTRTISYN----------LPVY-NVFGMIESE  178 (329)
T ss_dssp             ---------------------CCCCCCEEEEECCCTTGGGSC------EEEEEEEE----------EEEC-CSCC-CCEE
T ss_pred             chhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhc------cceEEEEE----------EEee-cCCeEEEEe
Confidence            589999999986422 122346789998887644  333333      33322111          0111 123333445


Q ss_pred             ecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeec
Q 039840           99 EGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGF  171 (198)
Q Consensus        99 ~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~  171 (198)
                      +.+.++|+||||+++|++|+|+|+|+++++ +.+|||+|+|+      |+|+|+||+++++|+|.         |||+|+
T Consensus       179 ~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~---------eAllG~  249 (329)
T 3lz8_A          179 TPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPW---------EAALGA  249 (329)
T ss_dssp             EEEEEEEEECTTCCTTCEEEESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHH---------HHHHCE
T ss_pred             cceEEEEeCCCCCCCCCEEEEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHH---------HHcCCC
Confidence            577899999999999999999999999875 57999999998      99999999999999999         999999


Q ss_pred             EEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          172 EKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       172 ~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      +++|+||||+ +.|++|++||||+++|
T Consensus       250 ~v~VptLdG~-v~l~ip~gt~~g~~~r  275 (329)
T 3lz8_A          250 KVTVPTLKES-ILLTVPPGSQAGQRLR  275 (329)
T ss_dssp             EEEECCSSSC-EEEEECTTCCTTCEEE
T ss_pred             eEEEECCCCC-EEEEECCCCCCCCEEE
Confidence            9999999998 8999999999999875

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=99.96  E-value=1.5e-28  Score=201.07  Aligned_cols=105  Identities=21%  Similarity=0.411  Sum_probs=100.9

Q ss_pred             cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE------eeecCCceEEEEEEeceec
Q 039840           85 EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG------LLREGNNLHATVTITLVKL  158 (198)
Q Consensus        85 ~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~  158 (198)
                      ..+|+.|+|.+++++.++++|+||||+++|++|+|+|+|++++++.+|||+|+|+      |+|+|+||+++++|||.  
T Consensus        27 ~~~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~--  104 (181)
T 3agx_A           27 SHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLR--  104 (181)
T ss_dssp             EEEEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEEETTEEEEEEEEEHH--
T ss_pred             ecccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCCCCCcccEEEEEEEeccccceeeCCcEEEEEEcCHH--
Confidence            4579999999999999999999999999999999999999988888999999998      99999999999999999  


Q ss_pred             cccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          159 SCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       159 ~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                             ||++|++++|+||||+.+.|++|++||||+++|
T Consensus       105 -------eAllG~~i~v~tldG~~~~i~i~~~t~~g~~~r  137 (181)
T 3agx_A          105 -------EALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRK  137 (181)
T ss_dssp             -------HHHHCEEEEEECTTSCEEEEEECSCCCTTCEEE
T ss_pred             -------HHhCCCEEEeECCCCCEEEEECCCccCCCcEEE
Confidence                   999999999999999889999999999999875

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=99.92  E-value=6.8e-25  Score=179.13  Aligned_cols=95  Identities=32%  Similarity=0.510  Sum_probs=90.7

Q ss_pred             eEeeecEEEEEEecCCCCCCcEEEEcccCCC-CCCCCCcceEEEEE------eeecCCceEEEEEEeceeccccccceee
Q 039840           95 KYEREGYFVTVDIEKGMQDGQEVVFCEDGEP-IIDGEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQA  167 (198)
Q Consensus        95 g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~-~~~~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~A  167 (198)
                      +++++.+.++|+||||+++|++|+|+|+|++ .+++.+|||+|+|+      |+|+|+||+++++|||.         ||
T Consensus        36 g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~---------eA  106 (180)
T 2q2g_A           36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLV---------RA  106 (180)
T ss_dssp             EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHH---------HH
T ss_pred             ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHH---------HH
Confidence            7888999999999999999999999999999 56678999999998      99999999999999999         99


Q ss_pred             eeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          168 VVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       168 l~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      ++|++++|+||||+.+.|++|++||||+++|
T Consensus       107 llG~~i~v~tldG~~v~i~ip~~t~~g~~~r  137 (180)
T 2q2g_A          107 LTGFTCPVTTLDNRNLQIPIKEIVNPKTRKI  137 (180)
T ss_dssp             HHCEEEEEECTTCCEEEEEECSCCCTTCEEE
T ss_pred             hCCCEEEeeCCCCCEEEEECCCccCCCEEEE
Confidence            9999999999999889999999999999875

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=99.90  E-value=4e-24  Score=173.12  Aligned_cols=91  Identities=21%  Similarity=0.447  Sum_probs=86.3

Q ss_pred             ecEEEEEEecCCCCCCcEEEEcccCCCC-CCCCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeec
Q 039840           99 EGYFVTVDIEKGMQDGQEVVFCEDGEPI-IDGEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGF  171 (198)
Q Consensus        99 ~~~~l~V~IP~G~~~G~~I~l~G~G~~~-~~~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~  171 (198)
                      +.++++|+||||+++|++|+|+|+|+++ +++.+|||+|+|+      |+|+|+||+++++|||.         ||++|+
T Consensus        34 ~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAllG~  104 (170)
T 1c3g_A           34 EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFK---------ESLLGF  104 (170)
T ss_dssp             EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHH---------HHHHCE
T ss_pred             EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHH---------HHhCCC
Confidence            7789999999999999999999999965 4578999999999      99999999999999999         999999


Q ss_pred             EEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          172 EKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       172 ~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      +++|+||||+.+.|++|++||||+++|
T Consensus       105 ~~~v~tldG~~~~i~i~~~t~~g~~~r  131 (170)
T 1c3g_A          105 SKTIQTIDGRTLPLSRVQPVQPSQTST  131 (170)
T ss_dssp             EEEEECSSSCEEEEEESSCCCTTCEEE
T ss_pred             eEEeeCCCCCEEEEECCCccCCCcEEE
Confidence            999999999889999999999999875

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=99.35  E-value=5.5e-13  Score=102.23  Aligned_cols=50  Identities=22%  Similarity=0.363  Sum_probs=48.0

Q ss_pred             eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCC--CCCCeEEC
Q 039840          140 LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGI--TKPKEVRK  198 (198)
Q Consensus       140 F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~--t~pg~v~r  198 (198)
                      |+|+|+||+++++|||.         +|++|++++|+||||+.+.|++|++  |+||+++|
T Consensus         2 F~R~G~DL~~~~~Isl~---------eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~r   53 (121)
T 1xao_A            2 FKRDGDDLVYEAEIDLL---------TAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKV   53 (121)
T ss_dssp             CEEETTEEEEEEEEEHH---------HHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEE
T ss_pred             ceEECCeEEEEEEcCHH---------HHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEE
Confidence            89999999999999999         9999999999999998899999988  99999875

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.30  E-value=1.3e-12  Score=98.65  Aligned_cols=49  Identities=14%  Similarity=0.181  Sum_probs=47.3

Q ss_pred             eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          140 LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       140 F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+|+|+||+++++|||.         ||++|++++|+||||. +.|++|++|+||+++|
T Consensus         7 F~R~G~DL~~~~~Isl~---------eAl~G~~i~v~tldG~-~~v~ip~g~~~G~~~r   55 (109)
T 3i38_A            7 FDIVGHNLEIVLPLAPW---------EAALGAKVTVPTLKES-ILLTVPPGSQAGQRLR   55 (109)
T ss_dssp             CEEETTEEEEEEEECHH---------HHHHCEEEEECCSSSC-EEEEECTTCCTTCEEE
T ss_pred             eEEECCEEEEEEEcCHH---------HHhCCCEEEEEcCCCC-EEEeeCCCcCcCeEEE
Confidence            99999999999999999         9999999999999995 9999999999999875

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.26  E-value=1.6e-07  Score=69.51  Aligned_cols=59  Identities=14%  Similarity=0.165  Sum_probs=43.1

Q ss_pred             CeEEeee-eecCCCCc-----------CCCCceeEEEEEEeCCeeEEEEe-----------cccccccCCeeEeeecEEE
Q 039840           47 DVWREKN-VIKPAPGK-----------RSCNCRNEVYHKQIGPGMFQQMT-----------EQVCEQCQNVKYEREGYFV  103 (198)
Q Consensus        47 Di~~~~~-~c~~c~G~-----------~~C~G~G~~~~~~~~~g~~~~~~-----------~~~C~~C~G~g~~~~~~~l  103 (198)
                      +|.+++. .|..|+|+           +.|+|+|++...+ |+ |.++.+           +++|+.|+|.|++++.+.+
T Consensus        22 ~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~-G~-~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l   99 (104)
T 2ctt_A           22 EFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT-GP-FVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRS   99 (104)
T ss_dssp             TCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE-TT-EEEEEECSSSSSSSEECSSCCSSSSSCSEECCCCSS
T ss_pred             EEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe-CC-EEEEEECCcCCCcceECCCcCCCCCCeeEEEEEEEE
Confidence            3555554 69999986           6799999876555 55 322222           5789999999999998888


Q ss_pred             EEEe
Q 039840          104 TVDI  107 (198)
Q Consensus       104 ~V~I  107 (198)
                      +|++
T Consensus       100 ~V~~  103 (104)
T 2ctt_A          100 GPSS  103 (104)
T ss_dssp             CCSC
T ss_pred             EEEc
Confidence            8764

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=97.81  E-value=2.8e-05  Score=58.15  Aligned_cols=37  Identities=24%  Similarity=0.259  Sum_probs=33.5

Q ss_pred             EEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE
Q 039840          102 FVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG  139 (198)
Q Consensus       102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~  139 (198)
                      .++|+||+|+++|++++++|+|.+.. +.+|||||+++
T Consensus        39 ~~~v~ip~g~~~G~~~rl~G~G~p~~-~~~GDL~v~~~   75 (109)
T 3i38_A           39 SILLTVPPGSQAGQRLRIKGKGLVSK-THTGDLFAVIK   75 (109)
T ss_dssp             CEEEEECTTCCTTCEEEETTCSCBCS-SCBCCEEEEEE
T ss_pred             CEEEeeCCCcCcCeEEEECCccCCCC-CCCcCEEEEEE
Confidence            47899999999999999999999874 37899999998

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.69  E-value=2.8e-05  Score=54.15  Aligned_cols=48  Identities=17%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             eEEeee-eecCCCCc-----------CCCCceeEEEEEEeCCeeEEEEe------------cccccccCCeeEee
Q 039840           48 VWREKN-VIKPAPGK-----------RSCNCRNEVYHKQIGPGMFQQMT------------EQVCEQCQNVKYER   98 (198)
Q Consensus        48 i~~~~~-~c~~c~G~-----------~~C~G~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~   98 (198)
                      |.+++. .|..|+|+           +.|+|+|+++..+   |+|+..+            +++|+.|+|.++++
T Consensus         6 i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~   77 (79)
T 1exk_A            6 IRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ---GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVE   77 (79)
T ss_dssp             CCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE---TTEEEEEECTTTTTSSEECSSBCGGGTTSSEEE
T ss_pred             EEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc---CCCEEeeECcCCCCccEECCCcCCCCCCeEEEe
Confidence            444443 58999886           6799999877655   4554322            45666666666654

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=97.60  E-value=8.3e-05  Score=56.42  Aligned_cols=40  Identities=30%  Similarity=0.418  Sum_probs=32.3

Q ss_pred             cEEEEEEecCC--CCCCcEEEEcccCCCCCCC-CCcceEEEEE
Q 039840          100 GYFVTVDIEKG--MQDGQEVVFCEDGEPIIDG-EPGDLKASFG  139 (198)
Q Consensus       100 ~~~l~V~IP~G--~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~  139 (198)
                      .+.++|+||+|  +++|++++++|+|.+..++ .+|||||.++
T Consensus        33 G~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~   75 (121)
T 1xao_A           33 GDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFT   75 (121)
T ss_dssp             SCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEE
T ss_pred             CCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEE
Confidence            34688999999  9999999999999987654 6899999998

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=96.98  E-value=0.0011  Score=53.35  Aligned_cols=40  Identities=23%  Similarity=0.340  Sum_probs=34.9

Q ss_pred             cEEEEEEecCCCCCCcEEEEcccCCCCCC--CCCcceEEEEE
Q 039840          100 GYFVTVDIEKGMQDGQEVVFCEDGEPIID--GEPGDLKASFG  139 (198)
Q Consensus       100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~--~~~GDLiv~i~  139 (198)
                      .+.++|+||+|+++|++++++|+|.+..+  +.+|||||.++
T Consensus       119 G~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~  160 (181)
T 3agx_A          119 GRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFE  160 (181)
T ss_dssp             SCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEE
T ss_pred             CCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEE
Confidence            34789999999999999999999998754  35799999988

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=96.93  E-value=0.0013  Score=52.82  Aligned_cols=39  Identities=23%  Similarity=0.406  Sum_probs=34.3

Q ss_pred             EEEEEEecCCCCCCcEEEEcccCCCCCC--CCCcceEEEEE
Q 039840          101 YFVTVDIEKGMQDGQEVVFCEDGEPIID--GEPGDLKASFG  139 (198)
Q Consensus       101 ~~l~V~IP~G~~~G~~I~l~G~G~~~~~--~~~GDLiv~i~  139 (198)
                      +.++|++|+|+++|++++++|+|.+..+  +.+|||||.++
T Consensus       120 ~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~  160 (180)
T 2q2g_A          120 RNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFD  160 (180)
T ss_dssp             CEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEE
T ss_pred             CEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEE
Confidence            3688999999999999999999998654  35799999988

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=96.91  E-value=0.00097  Score=53.13  Aligned_cols=40  Identities=18%  Similarity=0.299  Sum_probs=34.7

Q ss_pred             cEEEEEEecCCCCCCcEEEEcccCCCCCC--CCCcceEEEEE
Q 039840          100 GYFVTVDIEKGMQDGQEVVFCEDGEPIID--GEPGDLKASFG  139 (198)
Q Consensus       100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~--~~~GDLiv~i~  139 (198)
                      .+.++|+||+|+++|++++++|+|.+..+  +.+|||||.++
T Consensus       113 G~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~  154 (170)
T 1c3g_A          113 GRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYK  154 (170)
T ss_dssp             SCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEEC
T ss_pred             CCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEE
Confidence            34688999999999999999999998654  35799999987

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=96.65  E-value=0.0016  Score=54.85  Aligned_cols=40  Identities=30%  Similarity=0.418  Sum_probs=35.1

Q ss_pred             cEEEEEEecCC--CCCCcEEEEcccCCCCCCC-CCcceEEEEE
Q 039840          100 GYFVTVDIEKG--MQDGQEVVFCEDGEPIIDG-EPGDLKASFG  139 (198)
Q Consensus       100 ~~~l~V~IP~G--~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~  139 (198)
                      .+.++|+||||  +++|++++++|+|.+..+. .+|||||.|+
T Consensus       188 G~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~  230 (248)
T 1nlt_A          188 GDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFT  230 (248)
T ss_dssp             SCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEE
T ss_pred             CCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEE
Confidence            45789999999  9999999999999986543 5799999988

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=96.59  E-value=0.0025  Score=56.00  Aligned_cols=36  Identities=25%  Similarity=0.292  Sum_probs=32.7

Q ss_pred             EEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE
Q 039840          103 VTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG  139 (198)
Q Consensus       103 l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~  139 (198)
                      ++|+||+|+++|++++++|+|.+.. ..+|||+|+++
T Consensus       260 v~l~ip~gt~~g~~~rl~G~GmP~~-~~rGDL~v~~~  295 (329)
T 3lz8_A          260 ILLTVPPGSQAGQRLRIKGKGLVSK-THTGDLFAVIK  295 (329)
T ss_dssp             EEEEECTTCCTTCEEEETTCSCBCS-SCBCCEEEEEE
T ss_pred             EEEEECCCCCCCCEEEEcCCCCCCC-CCCCCEEEEEE
Confidence            6899999999999999999999865 56899999988

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=92.97  E-value=0.029  Score=36.63  Aligned_cols=15  Identities=13%  Similarity=0.319  Sum_probs=12.3

Q ss_pred             ccccccCCeeEeeec
Q 039840           86 QVCEQCQNVKYEREG  100 (198)
Q Consensus        86 ~~C~~C~G~g~~~~~  100 (198)
                      ++|+.|+|.|++++.
T Consensus        24 ~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A           24 EPCPKCLGKGVILTA   38 (53)
T ss_dssp             EECTTTTTSSEEECH
T ss_pred             CcCCCCCCcEEEEEE
Confidence            579999999988664

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=86.45  E-value=0.22  Score=32.31  Aligned_cols=14  Identities=14%  Similarity=0.292  Sum_probs=10.5

Q ss_pred             ccccccCCeeEeee
Q 039840           86 QVCEQCQNVKYERE   99 (198)
Q Consensus        86 ~~C~~C~G~g~~~~   99 (198)
                      .+|+.|+|.|.+..
T Consensus        24 ~~C~~C~G~G~v~~   37 (53)
T 2bx9_A           24 TPCPACSGKGVILT   37 (53)
T ss_dssp             EECTTTTTSSEEEC
T ss_pred             CCCccCCCCccEEE
Confidence            46888888887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d1nlta1	74	b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei	3e-05
d1c3ga1	80	b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba	0.001
d1nlta2	80	b.4.1.1 (A:258-337) Mitochondrial protein import p	0.004

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (90), Expect = 3e-05
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 90  QCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDL 134
           + +  K       + V +E GM+DGQ +VF  + +   D  PGD+
Sbjct: 20  KGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDV 64

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 6/57 (10%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 79  MFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVF-CEDGEPIIDGEPGDL 134
           +F    +      +      E   + + ++ G + G ++ +  +       G    L
Sbjct: 14  LFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTL 70

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.6 bits (74), Expect = 0.004
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 9/47 (19%)

Query: 142 REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTK 188
           R+G++L     I L         + A+ G E  ++H+ G  + +   
Sbjct: 4   RDGDDLVYEAEIDL---------LTAIAGGEFALEHVSGDWLKVGIV 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.36
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	99.22
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	98.88
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	98.83
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	98.29
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	98.27
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.97
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	97.58
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	97.34
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	96.14

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=1.5e-13  Score=98.39  Aligned_cols=50  Identities=26%  Similarity=0.553  Sum_probs=48.4

Q ss_pred             eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          140 LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       140 F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+|+|+||+++++||+.         ||++|++++|+|+||+.+.|++|++++||+++|
T Consensus         2 F~R~G~DL~~~~~I~~~---------eal~G~~~~i~~~dG~~i~i~ip~~~~~g~~~~   51 (90)
T d1c3ga2           2 FKRDGDDLIYTLPLSFK---------ESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTST   51 (90)
T ss_dssp             EEEETTEEEEEECCBHH---------HHHHCEEEEEECSSSCEEEEEESSCCCTTCEEE
T ss_pred             CeEeCCeEEEEEEeCHH---------HHhcCCeEEEecccccceecccccccccccccc
Confidence            89999999999999999         999999999999999989999999999999875

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=1.7e-12  Score=90.78  Aligned_cols=50  Identities=22%  Similarity=0.363  Sum_probs=46.6

Q ss_pred             eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCC--CCCCeEEC
Q 039840          140 LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGI--TKPKEVRK  198 (198)
Q Consensus       140 F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~--t~pg~v~r  198 (198)
                      |+|+|+||+++++||+.         ||++|++++|+|+||+.+.|++++.  |+||+++|
T Consensus         2 F~R~G~dL~~~~~I~~~---------eal~G~~~~i~~~dg~~~~i~i~~~~~~~~g~~~~   53 (80)
T d1nlta2           2 FKRDGDDLVYEAEIDLL---------TAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKV   53 (80)
T ss_dssp             CEEETTEEEEEEEEEHH---------HHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEE
T ss_pred             cEEeCCEEEEEEEeCHH---------HHhCCCEEEEEecCcceEEEEeCCCCCcCCCCEEE
Confidence            89999999999999999         9999999999999999888888755  99999874

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=1.8e-09  Score=75.01  Aligned_cols=49  Identities=12%  Similarity=0.246  Sum_probs=42.1

Q ss_pred             ccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840           88 CEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG  139 (198)
Q Consensus        88 C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~  139 (198)
                      |..|.+.+   +.++++|+||||+++|++|+|+|+|++.++ +.+|||+|+|+
T Consensus        26 r~~~~g~~---~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~   75 (80)
T d1c3ga1          26 RKGPHGAS---EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQ   75 (80)
T ss_dssp             EEETTTEE---EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEE
T ss_pred             eecccCCC---ceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEEE
Confidence            55666644   557799999999999999999999999887 57999999986

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=4.2e-09  Score=72.17  Aligned_cols=41  Identities=32%  Similarity=0.517  Sum_probs=38.0

Q ss_pred             ecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE
Q 039840           99 EGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG  139 (198)
Q Consensus        99 ~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~  139 (198)
                      ..+.++|+||+|+++|++|+|+|+|++.+++.+|||+|+|+
T Consensus        29 ~~~~~~i~Ip~G~~~G~~ir~~g~G~~~~~~~~GDl~v~i~   69 (74)
T d1nlta1          29 NRKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVS   69 (74)
T ss_dssp             EEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEE
T ss_pred             cCccEEEEecccccCCeEEEecCCcCCCCCCCCCCEEEEEE
Confidence            45789999999999999999999999998888999999986

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=4.7e-07  Score=61.75  Aligned_cols=47  Identities=30%  Similarity=0.537  Sum_probs=33.7

Q ss_pred             eeecCCCCc----------CCCCceeEEEEE-EeCCeeEEEEe--------------cccccccCCeeEeee
Q 039840           53 NVIKPAPGK----------RSCNCRNEVYHK-QIGPGMFQQMT--------------EQVCEQCQNVKYERE   99 (198)
Q Consensus        53 ~~c~~c~G~----------~~C~G~G~~~~~-~~~~g~~~~~~--------------~~~C~~C~G~g~~~~   99 (198)
                      .+|++|+|+          +.|+|+|++... +++++++|+.+              +++|+.|+|.++++|
T Consensus         3 v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~E   74 (74)
T d1nlta3           3 ILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENE   74 (74)
T ss_dssp             EECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred             cCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeCC
Confidence            369999887          679999987654 88885544433              356888888777764

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=1.7e-07  Score=63.95  Aligned_cols=47  Identities=9%  Similarity=0.150  Sum_probs=43.0

Q ss_pred             ecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840          142 REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK  198 (198)
Q Consensus       142 R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r  198 (198)
                      |+|.|++++++|||.         ||+.|.+++|+.. .+.++|+||+++++|+.+|
T Consensus         2 rkg~di~~~l~isle---------ea~~G~~~~~~~~-~~~~~i~Ip~G~~~G~~ir   48 (74)
T d1nlta1           2 QRGKDIKHEISASLE---------ELYKGRTAKLALN-RKILEVHVEPGMKDGQRIV   48 (74)
T ss_dssp             CBCCCEEEEEEECTT---------HHHHCEEEEEEEE-EEEEEEEECTTCCTTCEEE
T ss_pred             CCCCCEEEEEEecHH---------HHHhhcccceeec-CccEEEEecccccCCeEEE
Confidence            689999999999999         9999999999865 4569999999999999875

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=2.8e-06  Score=58.37  Aligned_cols=52  Identities=17%  Similarity=0.270  Sum_probs=33.9

Q ss_pred             CeEEeee-eecCCCCc-----------CCCCceeEEEEEEeCCeeEEEEe----------cccccccCCeeEeee
Q 039840           47 DVWREKN-VIKPAPGK-----------RSCNCRNEVYHKQIGPGMFQQMT----------EQVCEQCQNVKYERE   99 (198)
Q Consensus        47 Di~~~~~-~c~~c~G~-----------~~C~G~G~~~~~~~~~g~~~~~~----------~~~C~~C~G~g~~~~   99 (198)
                      +|.++++ .|..|+|+           +.|+|+|++.+.+ ++.++++.-          .++|+.|+|+|++++
T Consensus         5 ~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~-g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~k   78 (79)
T d1exka_           5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ-GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER   78 (79)
T ss_dssp             SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE-TTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred             EEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEEec-ccceeeEECcccCcceeECCCCCCCCCCceEeec
Confidence            4556654 59999886           6799999875443 432232211          567888888777764

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=3.3e-05  Score=53.85  Aligned_cols=40  Identities=18%  Similarity=0.299  Sum_probs=35.3

Q ss_pred             cEEEEEEecCCCCCCcEEEEcccCCCCCC--CCCcceEEEEE
Q 039840          100 GYFVTVDIEKGMQDGQEVVFCEDGEPIID--GEPGDLKASFG  139 (198)
Q Consensus       100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~--~~~GDLiv~i~  139 (198)
                      .+.++|+||+|+++|++++++|+|.+.+.  +.+|||+|.++
T Consensus        33 G~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~   74 (90)
T d1c3ga2          33 GRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYK   74 (90)
T ss_dssp             SCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEEC
T ss_pred             ccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEE
Confidence            56789999999999999999999998654  46899999987

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=9.7e-05  Score=50.16  Aligned_cols=40  Identities=33%  Similarity=0.506  Sum_probs=34.2

Q ss_pred             cEEEEEEecCC--CCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840          100 GYFVTVDIEKG--MQDGQEVVFCEDGEPIID-GEPGDLKASFG  139 (198)
Q Consensus       100 ~~~l~V~IP~G--~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~  139 (198)
                      ...++++||++  +++|++++++|+|.+.++ +.+|||+|.++
T Consensus        33 g~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~   75 (80)
T d1nlta2          33 GDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFT   75 (80)
T ss_dssp             SCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEE
T ss_pred             cceEEEEeCCCCCcCCCCEEEecCCCCCCCCcCCcCcEEEEEE
Confidence            46678888877  899999999999998776 47899999986

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.00099  Score=44.95  Aligned_cols=45  Identities=22%  Similarity=0.251  Sum_probs=36.9

Q ss_pred             CceEEEEEEeceeccccccceeeeeecEEEEe----CCCCc----EEEEeeCCCCCCCeEEC
Q 039840          145 NNLHATVTITLVKLSCGLWDVQAVVGFEKTIK----HLDGH----LVDISTKGITKPKEVRK  198 (198)
Q Consensus       145 ~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~----~ldG~----~~~i~~~~~t~pg~v~r  198 (198)
                      +|+.+++.|||.         ||..|.+++|+    ..+|.    ++.|.||+++++|++++
T Consensus         1 e~v~~~l~vtLe---------e~~~G~~k~i~~~r~~~~g~~~~~~~~v~Ip~G~~~G~~i~   53 (80)
T d1c3ga1           1 ETVQVNLPVSLE---------DLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKIT   53 (80)
T ss_dssp             CEEEEEEEECHH---------HHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEE
T ss_pred             CCEEEEeEEEHH---------HHhCCCceEeecceecccCCCceEEEEEEECCCCCCCcEEE
Confidence            478999999999         99999877665    34442    58899999999999875