Citrus Sinensis ID: 039842

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
Protein Sequence
MAALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHcccccccEEEEHHHHHHHHccccccccccccccccccccccccccccEEEEEcccccccccccEEEEcccEEEEEEEEccccEEccccEEEcccccEEEccccccccccEEEEccccccccccccHHHHHcccccccccccccccccccEEEccccEEccccEEEEEEEccccEEEcccEEccccEEccccEEccccccccccccccccEEEEcccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccHHHHcccccEEccccccccccccEEEccccEEEEEEEEccccEEcccEEEEccccEEEEcccccccccEEEEEccccccccccccEEHHHHHHEcccccccccccccccEEEcccEEEccEEEEEEEEEcccEEEEccEEEEccEEEcccEEEEEccccccccEccccEEEEcccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MAALARITRRALTTQLSHGHVIRRAFSTSAAATATATAtttkadaksitpsadrvkwdyrgqrqiiplgqwvpkVAVDAYVAPNVVLAGQvtvcdgasvwpgsvlrgdlnkitVGFCSNVQERCVlhaawnspyrFVGFVSLLIDLqmscprsnslyiawlpaetsIERFVTIGAYcslrsctiepeciigqhsilmegsMVETHAILEagsvlppgrriptgelwagnparFVRTltheetleiPKLAVAINDlskshfseflpysTVYLEVEKFKKSLGITI
Flexible Loop (DISEMBL)
MAALARITRRalttqlshghvirrafstsaaatatatatttkadaksitpsadrvkwdyrGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI
Low Complexity Region (SEG)
MaalaritrralttqlSHGHVIRRAFstsaaatatatatttkadaksitPSADRVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI
Disordered region (IsUnstruct)
**********ALTTQLSHGHVIRRAFS*************************DRVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFK*******
Disordered Region (DISOPRED)
*********R*LTTQLSHGHVIRRAFSTSAAATATAT****************RVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGIT*
Disordered Region (DISEMBL)
MAALARITRRALTTQLSHGHVIRRAFST*********************PSADRVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI
Disordered Region (DISPRO)
*****R*T**ALTTQLSHGHVIRRAFSTSAAATAT***************SADRVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	284	2.2.26 [Sep-21-2011]
Q9SMN1	256	Gamma carbonic anhydrase-	no	no	0.890	0.988	0.698	1e-106
Q9FMV1	252	Gamma carbonic anhydrase-	no	no	0.876	0.988	0.687	1e-105
Q94AU7	258	Gamma carbonic anhydrase	no	no	0.669	0.736	0.347	1e-29
Q9C6B3	278	Gamma carbonic anhydrase	no	no	0.714	0.730	0.323	1e-27
Q9FWR5	275	Gamma carbonic anhydrase	no	no	0.669	0.690	0.337	2e-27
Q54JC2	246	Uncharacterized protein D	no	no	0.598	0.691	0.316	9e-23
P0A9X0	184	Protein YrdA OS=Shigella	yes	no	0.531	0.820	0.285	6e-18
P0A9W9	184	Protein YrdA OS=Escherich	N/A	no	0.531	0.820	0.285	6e-18
O34696	171	Uncharacterized transfera	yes	no	0.588	0.976	0.28	9e-17
Q57752	159	Uncharacterized protein M	yes	no	0.517	0.924	0.286	8e-16

>sp|Q9SMN1|GCAL2_ARATH Gamma carbonic anhydrase-like 2, mitochondrial OS=Arabidopsis thaliana GN=GAMMACAL2 PE=1 SV=1

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/282 (69%), Positives = 225/282 (79%), Gaps = 29/282 (10%)

Query: 3   ALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYRGQ 62
           +LARI++R++T+ +S  ++IRR F+  A A AT      K+    +TPS DRVKWDYRGQ
Sbjct: 4   SLARISKRSITSAVSS-NLIRRYFAAEAVAVATTETPKPKSQ---VTPSPDRVKWDYRGQ 59

Query: 63  RQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQE 122
           RQIIPLGQW+PKVAVDAYVAPNVVLAGQVTV DG+SVW G+VLRGDLNKITVGFCSNVQE
Sbjct: 60  RQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQE 119

Query: 123 RCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSC 182
           RCV+HAAW+SP                           LPA+T I+R+VT+GAY  LRSC
Sbjct: 120 RCVVHAAWSSP-------------------------TGLPAQTLIDRYVTVGAYSLLRSC 154

Query: 183 TIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEET 242
           TIEPECIIGQHSILMEGS+VET +ILEAGSVLPPGRRIP+GELW GNPARF+RTLT+EET
Sbjct: 155 TIEPECIIGQHSILMEGSLVETRSILEAGSVLPPGRRIPSGELWGGNPARFIRTLTNEET 214

Query: 243 LEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 284
           LEIPKLAVAIN LS  +FSEFLPYST+YLEVEKFKKSLGI I
Sbjct: 215 LEIPKLAVAINHLSGDYFSEFLPYSTIYLEVEKFKKSLGIAI 256

Involved in complex I assembly in mitochondria and respiration.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMV1|GCAL1_ARATH Gamma carbonic anhydrase-like 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACAL1 PE=1 SV=1

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/282 (68%), Positives = 219/282 (77%), Gaps = 33/282 (11%)

Query: 3   ALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYRGQ 62
           ++AR++RR +T+ L     IRR F   AA  A A  T       +++PS DRVKWDYRGQ
Sbjct: 4   SIARLSRRGVTSNL-----IRRCF---AAEAALARKTELPKPQFTVSPSTDRVKWDYRGQ 55

Query: 63  RQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQE 122
           RQIIPLGQW+PKVAVDAYVAPNVVLAGQVTV DG+SVW G+VLRGDLNKITVGFCSNVQE
Sbjct: 56  RQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQE 115

Query: 123 RCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSC 182
           RCV+HAAW+SP                           LPA T I+R+VT+GAY  LRSC
Sbjct: 116 RCVVHAAWSSP-------------------------TGLPAATIIDRYVTVGAYSLLRSC 150

Query: 183 TIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEET 242
           TIEPECIIGQHSILMEGS+VET +ILEAGSV+PPGRRIP+GELW GNPARF+RTLT+EET
Sbjct: 151 TIEPECIIGQHSILMEGSLVETRSILEAGSVVPPGRRIPSGELWGGNPARFIRTLTNEET 210

Query: 243 LEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 284
           LEIPKLAVAIN LS  +FSEFLPYSTVYLEVEKFKKSLGI +
Sbjct: 211 LEIPKLAVAINHLSGDYFSEFLPYSTVYLEVEKFKKSLGIAV 252

Involved in complex I assembly in mitochondria and respiration.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AU7|GCA3_ARATH Gamma carbonic anhydrase 3, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA3 PE=1 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 117/219 (53%), Gaps = 29/219 (13%)

Query: 62  QRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQ 121
            R ++ +    P V   A+VAPN  L+G V V  G+S+W G VLRGD N I+VG  +N+Q
Sbjct: 42  HRTLMNVFDKTPNVDKGAFVAPNASLSGDVHVGRGSSIWYGCVLRGDANSISVGAGTNIQ 101

Query: 122 ERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRS 181
           +  ++H A                         +L    LP  T I   VTIG    L  
Sbjct: 102 DNALVHVA-----------------------KTNLSGKVLP--TVIGDNVTIGHSAVLHG 136

Query: 182 CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
           CT+E E  IG  + +++G+ VE HA++ +G+++    RIP+GE+W GNPA+F+R +T EE
Sbjct: 137 CTVEDEAYIGTSATVLDGAHVEKHAMVASGALVRQNTRIPSGEVWGGNPAKFLRKVTEEE 196

Query: 242 TLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSL 280
            +     AV  ++L+++H +E    +   L+  +FKK L
Sbjct: 197 RVFFSSSAVEYSNLAQAHATE----NAKNLDEAEFKKLL 231

Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide. Mediates complex I assembly in mitochondria and respiration.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C6B3|GCA2_ARATH Gamma carbonic anhydrase 2, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA2 PE=1 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 26/229 (11%)

Query: 47  SITPSADRVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLR 106
           S+   + R++      R ++ +    P V  D +VAP+  + G V +  G+S+W G VLR
Sbjct: 27  SLLQGSHRIEEHLSRHRTLMNVFDKSPLVDKDVFVAPSASVIGDVQIGKGSSIWYGCVLR 86

Query: 107 GDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETS 166
           GD+N I+VG  +N+Q+  ++H A                         ++    LP  T 
Sbjct: 87  GDVNNISVGSGTNIQDNTLVHVA-----------------------KTNISGKVLP--TL 121

Query: 167 IERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW 226
           I   VT+G    +  CT+E +  +G  + L++G +VE HA++ AGS++    RIP+GE+W
Sbjct: 122 IGDNVTVGHSAVIHGCTVEDDAFVGMGATLLDGVVVEKHAMVAAGSLVKQNTRIPSGEVW 181

Query: 227 AGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEK 275
            GNPA+F+R LT EE + I + A    +L++ H SE    S   +EVE+
Sbjct: 182 GGNPAKFMRKLTDEEIVYISQSAKNYINLAQIHASEN-SKSFEQIEVER 229

Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide (PubMed:19808034). Mediates complex I assembly in mitochondria and respiration. Binds HCO(3)-. Required for male fertility during anther development and dehiscence to regulate the secondary thickenings of the endothecial cell wall, probably by modulating H(2)O(2)-dependent lignin polymerization.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FWR5|GCA1_ARATH Gamma carbonic anhydrase 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA1 PE=1 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 29/219 (13%)

Query: 62  QRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQ 121
            R ++ +    P V  +A+VAP+  + G V +  G+S+W G VLRGD+N ++VG  +N+Q
Sbjct: 42  HRTLMNVFDKAPIVDKEAFVAPSASVIGDVHIGRGSSIWYGCVLRGDVNTVSVGSGTNIQ 101

Query: 122 ERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRS 181
           +  ++H A                      +SN   ++     T I   VTIG    L  
Sbjct: 102 DNSLVHVA----------------------KSN---LSGKVHPTIIGDNVTIGHSAVLHG 136

Query: 182 CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
           CT+E E  IG  + L++G +VE H ++ AG+++    RIP+GE+W GNPARF+R LT EE
Sbjct: 137 CTVEDETFIGMGATLLDGVVVEKHGMVAAGALVRQNTRIPSGEVWGGNPARFLRKLTDEE 196

Query: 242 TLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSL 280
              I + A   ++L+++H +E    +   L V +F+K L
Sbjct: 197 IAFISQSATNYSNLAQAHAAE----NAKPLNVIEFEKVL 231

Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide. Mediates complex I assembly in mitochondria and respiration.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q54JC2|Y2881_DICDI Uncharacterized protein DDB_G0288155 OS=Dictyostelium discoideum GN=DDB_G0288155 PE=1 SV=1

 Score =  107 bits (267), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 26/196 (13%)

Query: 64  QIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQER 123
           ++   G   P V   +++APN  + G V +   +S+W  +VLRGD+N I +G  + V +R
Sbjct: 43  RLTAFGDNAPIVGQKSFIAPNASIIGDVVIGKESSIWYNAVLRGDVNSIHIGDKTVVSDR 102

Query: 124 CVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCT 183
            V+H + N P                            P  T I   V IG    + + T
Sbjct: 103 TVVHCSSNGPLG--------------------------PKPTQIGDKVYIGPGSIVHAAT 136

Query: 184 IEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETL 243
           I  E  IG  S L +GS+VE +  LEAGS+L  G+ I +GE W G+PA+F+R +T ++  
Sbjct: 137 ILGESFIGTGSTLCDGSVVEKNGFLEAGSLLTAGKTIKSGEYWGGSPAKFIRQVTKDDES 196

Query: 244 EIPKLAVAINDLSKSH 259
           ++ K+     +LS+ H
Sbjct: 197 QLEKIIEQNINLSEQH 212

Dictyostelium discoideum (taxid: 44689)

>sp|P0A9X0|YRDA_SHIFL Protein YrdA OS=Shigella flexneri GN=yrdA PE=3 SV=1

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 24/175 (13%)

Query: 67  PLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVL 126
           P     P++     +  + V+ G V + D   +WP  V+RGD++ + +G  +N+Q+  +L
Sbjct: 7   PYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSML 66

Query: 127 HAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEP 186
           H    S Y                P  N L         +I   VT+G    L  CTI  
Sbjct: 67  HVTHKSSYN---------------PDGNPL---------TIGEDVTVGHKVMLHGCTIGN 102

Query: 187 ECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
             ++G  SIL++G++VE   ++ AGS++P  +R+ +G L+ G+P + +R L+ EE
Sbjct: 103 RVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEE 157

Shigella flexneri (taxid: 623)

>sp|P0A9W9|YRDA_ECOLI Protein YrdA OS=Escherichia coli (strain K12) GN=yrdA PE=1 SV=1

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 24/175 (13%)

Query: 67  PLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVL 126
           P     P++     +  + V+ G V + D   +WP  V+RGD++ + +G  +N+Q+  +L
Sbjct: 7   PYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSML 66

Query: 127 HAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEP 186
           H    S Y                P  N L         +I   VT+G    L  CTI  
Sbjct: 67  HVTHKSSYN---------------PDGNPL---------TIGEDVTVGHKVMLHGCTIGN 102

Query: 187 ECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
             ++G  SIL++G++VE   ++ AGS++P  +R+ +G L+ G+P + +R L+ EE
Sbjct: 103 RVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEE 157

Escherichia coli (strain K12) (taxid: 83333)

>sp|O34696|YTOA_BACSU Uncharacterized transferase YtoA OS=Bacillus subtilis (strain 168) GN=ytoA PE=3 SV=1

 Score = 87.8 bits (216), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 33/200 (16%)

Query: 65  IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERC 124
           I P  +  P +   A++A N  + G V + + +S+W   V+RGD+    +G   N+Q+  
Sbjct: 2   IYPYKEHKPDIHPTAFIADNATITGDVVIGEQSSIWFSVVIRGDVAPTRIGNRVNIQDLS 61

Query: 125 VLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTI 184
            LH + N         +LL                       IE   TIG   +L S  I
Sbjct: 62  CLHQSPNK--------TLL-----------------------IEDDATIGHQVTLHSAVI 90

Query: 185 EPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLE 244
               +IG  SI+++G+ +   A + AGS++PPG+ IP G L  G PA+ +R LT E+  +
Sbjct: 91  RKNALIGMGSIILDGAEIGEGAFIGAGSLVPPGKIIPPGHLAFGRPAKVIRPLTEEDRKD 150

Query: 245 IPKLAVAINDLSKSHFSEFL 264
           + ++      + K  + +FL
Sbjct: 151 MQRIRSEY--VEKGQYYKFL 168

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q57752|Y304_METJA Uncharacterized protein MJ0304 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0304 PE=3 SV=1

 Score = 84.3 bits (207), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 31/178 (17%)

Query: 81  VAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFV 140
           +A   V+ G VT+ D +SVW  +V+RGD++KI +G  SN+Q+ CV+H +   P       
Sbjct: 8   IAKGAVIVGDVTIGDYSSVWYNAVIRGDVDKIIIGNYSNIQDCCVVHCSKGYP------- 60

Query: 141 SLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGS 200
                                   T I  +V+IG    +  C IE   ++G ++ ++ G+
Sbjct: 61  ------------------------TIIGDYVSIGHGAVIHGCRIEDNVLVGMNATILNGA 96

Query: 201 MVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKS 258
            +  + I+ A +++   + IP   L  G P R VR LT EE   I + A+    LS++
Sbjct: 97  KIGENCIIGANALVTQNKEIPPNSLVLGVPGRVVRELTEEEIKSIKENALRYVKLSET 154

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
255540193	253	Protein yrdA, putative [Ricinus communis	0.880	0.988	0.742	1e-115
449520511	244	PREDICTED: gamma carbonic anhydrase-like	0.859	1.0	0.735	1e-114
449440536	244	PREDICTED: gamma carbonic anhydrase-like	0.859	1.0	0.718	1e-111
224119706	251	predicted protein [Populus trichocarpa]	0.830	0.940	0.755	1e-109
356513425	253	PREDICTED: uncharacterized protein At5g6	0.862	0.968	0.702	1e-107
356527967	253	PREDICTED: uncharacterized protein At3g4	0.862	0.968	0.702	1e-107
388490758	253	unknown [Lotus japonicus]	0.890	1.0	0.711	1e-106
255646687	253	unknown [Glycine max]	0.890	1.0	0.707	1e-106
388509710	253	unknown [Medicago truncatula]	0.890	1.0	0.697	1e-105
297793931	252	hypothetical protein ARALYDRAFT_496538 [	0.876	0.988	0.695	1e-105

>gi|255540193|ref|XP_002511161.1| Protein yrdA, putative [Ricinus communis] gi|223550276|gb|EEF51763.1| Protein yrdA, putative [Ricinus communis]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/284 (74%), Positives = 232/284 (81%), Gaps = 34/284 (11%)

Query: 2   AALARITRRALTTQLS-HGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYR 60
           AAL+RI+++ALT+ +S   H ++R FS + + +++ T        KSITPSADRVKWDYR
Sbjct: 3   AALSRISKKALTSTISPQCHFLKRGFSAAESLSSSPT--------KSITPSADRVKWDYR 54

Query: 61  GQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNV 120
           GQRQIIPLGQW+PKVAVDAYVAPNVVLAGQVTV DGASVW GSVLRGDLNKITVGFCSNV
Sbjct: 55  GQRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGASVWSGSVLRGDLNKITVGFCSNV 114

Query: 121 QERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR 180
           QERCV+HAAWNSP                           LPAETSIER+VTIGAY  LR
Sbjct: 115 QERCVVHAAWNSP-------------------------TGLPAETSIERYVTIGAYSLLR 149

Query: 181 SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE 240
           SCTIEPECIIGQHSILMEGS+VETH+ILEAGSV+PPGRRIPTGELWAGNPARFVR LTHE
Sbjct: 150 SCTIEPECIIGQHSILMEGSLVETHSILEAGSVVPPGRRIPTGELWAGNPARFVRALTHE 209

Query: 241 ETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 284
           ETLEIPKLAVAINDLSK+HFSEFLPYSTVYLEVEK KK LGI+I
Sbjct: 210 ETLEIPKLAVAINDLSKNHFSEFLPYSTVYLEVEKMKKKLGISI 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520511|ref|XP_004167277.1| PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial-like [Cucumis sativus]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/284 (73%), Positives = 226/284 (79%), Gaps = 40/284 (14%)

Query: 1   MAALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYR 60
           MAALAR +R+A+ + ++    +RRAFST  +              K+ITPS DRVKWDYR
Sbjct: 1   MAALARFSRKAIASAVATNQ-LRRAFSTQVS--------------KTITPSPDRVKWDYR 45

Query: 61  GQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNV 120
           GQRQIIPLGQW+P +AVDAYVAPNVVLAGQV VCDGASVW GSVLRGDLNKIT+GFCSNV
Sbjct: 46  GQRQIIPLGQWLPTIAVDAYVAPNVVLAGQVKVCDGASVWAGSVLRGDLNKITIGFCSNV 105

Query: 121 QERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR 180
           QERCVLHAAW+SP                           LPAETS+ERFVTIGAYC LR
Sbjct: 106 QERCVLHAAWSSP-------------------------TGLPAETSVERFVTIGAYCLLR 140

Query: 181 SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE 240
           SCTIEPECIIGQHSILMEGS+VETH+ILEAGSV+PPGRRIPTGELWAGNPARFVRTLTHE
Sbjct: 141 SCTIEPECIIGQHSILMEGSLVETHSILEAGSVVPPGRRIPTGELWAGNPARFVRTLTHE 200

Query: 241 ETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 284
           ETLEIPKLAVAINDLSK HFSEFLPYS  YLEVEKFKKSLGITI
Sbjct: 201 ETLEIPKLAVAINDLSKDHFSEFLPYSQAYLEVEKFKKSLGITI 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440536|ref|XP_004138040.1| PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial-like [Cucumis sativus]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/284 (71%), Positives = 223/284 (78%), Gaps = 40/284 (14%)

Query: 1   MAALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYR 60
           MAALAR +R+A+ + ++    +RRAFST  +              K+ITPS DRVKWDYR
Sbjct: 1   MAALARFSRKAIASAVATNQ-LRRAFSTQVS--------------KTITPSPDRVKWDYR 45

Query: 61  GQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNV 120
           GQRQIIPLGQW+P +AVDAYVAPNVVLAGQV VCDGASVW GSVLRGDLNKIT+GFCSNV
Sbjct: 46  GQRQIIPLGQWLPTIAVDAYVAPNVVLAGQVKVCDGASVWAGSVLRGDLNKITIGFCSNV 105

Query: 121 QERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR 180
           QERCVLHAAW+SP            +Q++C                  RFVTIGAYC LR
Sbjct: 106 QERCVLHAAWSSPTG---------SIQLTC----------------FYRFVTIGAYCLLR 140

Query: 181 SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE 240
           SCTIEPECIIGQHSILMEGS+VETH+ILEAGSV+PPGRRIPTGELWAGNPARFVRTLTHE
Sbjct: 141 SCTIEPECIIGQHSILMEGSLVETHSILEAGSVVPPGRRIPTGELWAGNPARFVRTLTHE 200

Query: 241 ETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 284
           ETLEIPKLAVAINDLSK HFSEFLPYS  YLEVEKFKKSLGITI
Sbjct: 201 ETLEIPKLAVAINDLSKDHFSEFLPYSQAYLEVEKFKKSLGITI 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119706|ref|XP_002318141.1| predicted protein [Populus trichocarpa] gi|118488068|gb|ABK95854.1| unknown [Populus trichocarpa] gi|222858814|gb|EEE96361.1| predicted protein [Populus trichocarpa]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/270 (75%), Positives = 217/270 (80%), Gaps = 34/270 (12%)

Query: 4   LARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYRGQR 63
           LARI R++LTT  +    + R F T A A ATA+        KSITPSADRVKWDYRGQR
Sbjct: 5   LARIARKSLTTTTAFS--LNRHFGTEAVAAATAST-------KSITPSADRVKWDYRGQR 55

Query: 64  QIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQER 123
           QIIPLGQW+PKVAVDAYVAPNVVLAGQVTV DGASVW G+VLRGDLNKITVGFCSNVQER
Sbjct: 56  QIIPLGQWLPKVAVDAYVAPNVVLAGQVTVYDGASVWNGAVLRGDLNKITVGFCSNVQER 115

Query: 124 CVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCT 183
           CV+HAAWNSP                           LPAETSIER+VTIGAY  LRSCT
Sbjct: 116 CVVHAAWNSP-------------------------TGLPAETSIERYVTIGAYSLLRSCT 150

Query: 184 IEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETL 243
           IEPECIIGQHSILMEGS+VETH+ILEAGSV+PPGRRIPTGELWAGNPARFVRTLTHEETL
Sbjct: 151 IEPECIIGQHSILMEGSLVETHSILEAGSVVPPGRRIPTGELWAGNPARFVRTLTHEETL 210

Query: 244 EIPKLAVAINDLSKSHFSEFLPYSTVYLEV 273
           EIPKLAVAINDLSK+HF EFLPYSTVYLEV
Sbjct: 211 EIPKLAVAINDLSKTHFFEFLPYSTVYLEV 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513425|ref|XP_003525414.1| PREDICTED: uncharacterized protein At5g63510, mitochondrial-like [Glycine max]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/292 (70%), Positives = 225/292 (77%), Gaps = 47/292 (16%)

Query: 1   MAALARITRRALTTQ--LSHGHV------IRRAFSTSAAATATATATTTKADAKSITPSA 52
           MA LA  ++RAL +   L+  HV        RAF+T AA              KSI+PSA
Sbjct: 1   MANLAHFSKRALRSAHALARHHVQPQLLAAERAFATEAA--------------KSISPSA 46

Query: 53  DRVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKI 112
           DRVKWDYRGQR+IIPLGQW+PKVAVDAYVAPNVVLAGQVTV DGASVWPG VLRGDLNKI
Sbjct: 47  DRVKWDYRGQRKIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGASVWPGCVLRGDLNKI 106

Query: 113 TVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT 172
           +VGFCSNVQER V+HAAW+SP                           LPA+TSIER+VT
Sbjct: 107 SVGFCSNVQERSVIHAAWSSP-------------------------TGLPADTSIERYVT 141

Query: 173 IGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR 232
           IGAY  LRSCTIEPECIIGQHSILMEGS+VET +ILEAGSV+PPGRRIPTGELWAGNPAR
Sbjct: 142 IGAYSLLRSCTIEPECIIGQHSILMEGSLVETQSILEAGSVVPPGRRIPTGELWAGNPAR 201

Query: 233 FVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 284
           FVRTLTHEE LEIPKLAVAINDLS+ H+SEFLPYSTVYLEVEKFKKSLGI++
Sbjct: 202 FVRTLTHEEILEIPKLAVAINDLSRDHYSEFLPYSTVYLEVEKFKKSLGISV 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527967|ref|XP_003532577.1| PREDICTED: uncharacterized protein At3g48680, mitochondrial-like [Glycine max]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/292 (70%), Positives = 224/292 (76%), Gaps = 47/292 (16%)

Query: 1   MAALARITRRALTTQ--LSHGHV------IRRAFSTSAAATATATATTTKADAKSITPSA 52
           MA LAR ++RAL +   L+  HV        RAFST A                SITPSA
Sbjct: 1   MANLARFSKRALRSAHALARPHVQPQLLTAERAFSTDAPT--------------SITPSA 46

Query: 53  DRVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKI 112
           DRVKWDYRGQR+IIPLGQW+PKVAVDAYVAPNVVLAGQVTV DGASVWPG VLRGDLNKI
Sbjct: 47  DRVKWDYRGQRKIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGASVWPGCVLRGDLNKI 106

Query: 113 TVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT 172
           ++GFCSNVQER VLHAAW+SP                           LPA+TSIER+VT
Sbjct: 107 SIGFCSNVQERSVLHAAWSSP-------------------------TGLPADTSIERYVT 141

Query: 173 IGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR 232
           IGAY  LRSCTIEPECIIGQHSILMEGS+VET +ILEAGSV+PPGRRIPTGELWAGNPAR
Sbjct: 142 IGAYSLLRSCTIEPECIIGQHSILMEGSLVETQSILEAGSVVPPGRRIPTGELWAGNPAR 201

Query: 233 FVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 284
           +VRTLTHEE LEIPKLAVAINDLS+ H+SEFLPYSTVYLEVEKFKKSLGI++
Sbjct: 202 YVRTLTHEEILEIPKLAVAINDLSRDHYSEFLPYSTVYLEVEKFKKSLGISV 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490758|gb|AFK33445.1| unknown [Lotus japonicus]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/284 (71%), Positives = 223/284 (78%), Gaps = 31/284 (10%)

Query: 1   MAALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYR 60
           MA LAR +RRAL T  +  +   RA    AAA     A  T+A AKS+  SAD VKWDYR
Sbjct: 1   MANLARFSRRALLTARTVAN--HRAQPQLAAAE---RAFATEA-AKSVALSADPVKWDYR 54

Query: 61  GQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNV 120
           GQR+IIPLGQW+PK+AVDAYVAPNVVLAGQVTV DGASVWPG VLRGDLNKI++GFCSNV
Sbjct: 55  GQRKIIPLGQWLPKIAVDAYVAPNVVLAGQVTVWDGASVWPGCVLRGDLNKISIGFCSNV 114

Query: 121 QERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR 180
           QERCVLHAAW+SP                           LPAET++ER+VT+GAY  LR
Sbjct: 115 QERCVLHAAWSSP-------------------------TGLPAETTVERYVTVGAYSLLR 149

Query: 181 SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE 240
           SCTIEPECIIGQHSILMEGS+VET +ILEAGSV+PPGRRIP+GELWAGNPARFVRTLTHE
Sbjct: 150 SCTIEPECIIGQHSILMEGSLVETQSILEAGSVVPPGRRIPSGELWAGNPARFVRTLTHE 209

Query: 241 ETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 284
           E LEIPKLAVAINDLS+ HF EFLPYSTVYLEVEKFKKSLGI +
Sbjct: 210 EILEIPKLAVAINDLSRDHFDEFLPYSTVYLEVEKFKKSLGIAV 253

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646687|gb|ACU23817.1| unknown [Glycine max]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/284 (70%), Positives = 220/284 (77%), Gaps = 31/284 (10%)

Query: 1   MAALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYR 60
           MA LA  ++RAL +     H + R         A  T  T  A  KSI+PSADRVKWDYR
Sbjct: 1   MANLAHFSKRALRS----AHALARHHVQPQLLAAERTFATEAA--KSISPSADRVKWDYR 54

Query: 61  GQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNV 120
           GQR+IIPLGQW+PKVAVDAYVAPNVVLAGQVTV DGASV PG VLRGDLNKI+VGFCSNV
Sbjct: 55  GQRKIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGASVRPGCVLRGDLNKISVGFCSNV 114

Query: 121 QERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR 180
           QER V+HAAW+SP                           LPA+TSIER+VTIGAY  LR
Sbjct: 115 QERSVIHAAWSSP-------------------------TGLPADTSIERYVTIGAYSLLR 149

Query: 181 SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE 240
           SCTIEPECIIGQHSILMEGS+VET +ILEAGSV+PPGRRIPTGELWAGNPARFVRTLTHE
Sbjct: 150 SCTIEPECIIGQHSILMEGSLVETQSILEAGSVVPPGRRIPTGELWAGNPARFVRTLTHE 209

Query: 241 ETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 284
           E LEIPKLAVAINDLS+ H+SEFLPYSTVYLEVEKFKKSLGI++
Sbjct: 210 EILEIPKLAVAINDLSRDHYSEFLPYSTVYLEVEKFKKSLGISV 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509710|gb|AFK42921.1| unknown [Medicago truncatula]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/284 (69%), Positives = 218/284 (76%), Gaps = 31/284 (10%)

Query: 1   MAALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYR 60
           MA LAR T +AL T  S   + +       A++  A AT     AKSITPS DRV WDYR
Sbjct: 1   MANLARFTNKALRTAYS---ITKHHAQPQLASSERAFATEA---AKSITPSPDRVNWDYR 54

Query: 61  GQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNV 120
           GQR+IIPLGQW+PK+AVDAYVAPNVVLAGQV V DGASVWPG VLRGDLNKI++GFCSNV
Sbjct: 55  GQRKIIPLGQWLPKIAVDAYVAPNVVLAGQVHVWDGASVWPGCVLRGDLNKISIGFCSNV 114

Query: 121 QERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR 180
           QERCVLHAAW SP                           LPAETSIER+VTIGAY  LR
Sbjct: 115 QERCVLHAAWFSP-------------------------TGLPAETSIERYVTIGAYSLLR 149

Query: 181 SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE 240
           SCTIEPE IIGQHSILMEGS+VETH+I E GSV+PPGR IP+GELWAGNPA+FVRTLTHE
Sbjct: 150 SCTIEPEVIIGQHSILMEGSIVETHSIFEGGSVVPPGRIIPSGELWAGNPAKFVRTLTHE 209

Query: 241 ETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 284
           ETLEIPKLAVAINDLSK H+ EFLPYST+YLEVEKFKKSLGI++
Sbjct: 210 ETLEIPKLAVAINDLSKDHYHEFLPYSTIYLEVEKFKKSLGISV 253

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793931|ref|XP_002864850.1| hypothetical protein ARALYDRAFT_496538 [Arabidopsis lyrata subsp. lyrata] gi|297310685|gb|EFH41109.1| hypothetical protein ARALYDRAFT_496538 [Arabidopsis lyrata subsp. lyrata]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/282 (69%), Positives = 221/282 (78%), Gaps = 33/282 (11%)

Query: 3   ALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYRGQ 62
           ++AR++RR +T+ L     IRR F   AA  A AT T       +++PS DRVKWDYRGQ
Sbjct: 4   SIARLSRRGVTSNL-----IRRCF---AAEAALATKTEVPKPQLTVSPSPDRVKWDYRGQ 55

Query: 63  RQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQE 122
           RQIIPLGQW+PKVAVDAYVAPNVVLAGQVTV DG+SVW G+VLRGDLNKITVGFCSNVQE
Sbjct: 56  RQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQE 115

Query: 123 RCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSC 182
           RCV+HAAW+SP                           LPAET I+R+VT+GAY  LRSC
Sbjct: 116 RCVVHAAWSSP-------------------------TGLPAETIIDRYVTVGAYSLLRSC 150

Query: 183 TIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEET 242
           TIEPECIIGQHSILMEGS+VET +ILEAGSV+PPGRRIP+GELW GNPARF+RTLT+EET
Sbjct: 151 TIEPECIIGQHSILMEGSLVETRSILEAGSVVPPGRRIPSGELWGGNPARFIRTLTNEET 210

Query: 243 LEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 284
           LEIPKLAVAIN LS  +FSEFLPYSTVYLEVEKFKKSLGI +
Sbjct: 211 LEIPKLAVAINHLSGDYFSEFLPYSTVYLEVEKFKKSLGIAV 252

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
TAIR|locus:2114445	256	GAMMA CAL2 "gamma carbonic anh	0.619	0.687	0.647	4.3e-54
TIGR_CMR|APH_1197	170	APH_1197 "hexapeptide transfer	0.338	0.564	0.416	1.1e-27
TIGR_CMR|NSE_0045	185	NSE_0045 "hexapeptide transfer	0.345	0.529	0.387	2.5e-26
TIGR_CMR|ECH_1066	170	ECH_1066 "hexapeptide transfer	0.338	0.564	0.364	1.2e-24
UNIPROTKB|Q48AV3	179	CPS_0032 "Bacterial transferas	0.320	0.508	0.285	1.8e-22
TIGR_CMR|CPS_0032	179	CPS_0032 "bacterial transferas	0.320	0.508	0.285	1.8e-22
UNIPROTKB|Q81KI7	170	BAS4655 "Bacterial transferase	0.288	0.482	0.365	1.1e-21
TIGR_CMR|BA_5010	170	BA_5010 "bacterial transferase	0.288	0.482	0.365	1.1e-21
UNIPROTKB|Q482R8	173	CPS_2224 "Bacterial transferas	0.221	0.364	0.412	4.2e-21
TIGR_CMR|CPS_2224	173	CPS_2224 "bacterial transferas	0.221	0.364	0.412	4.2e-21

TAIR|locus:2114445 GAMMA CAL2 "gamma carbonic anhydrase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 125/193 (64%), Positives = 143/193 (74%)

Query:    97 ASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSL 156
             A V P  VL G   ++TV   S+V    VL    N     VGF S   ++Q  C     +
Sbjct:    76 AYVAPNVVLAG---QVTVWDGSSVWNGAVLRGDLNKIT--VGFCS---NVQERCV----V 123

Query:   157 YIAW-----LPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAG 211
             + AW     LPA+T I+R+VT+GAY  LRSCTIEPECIIGQHSILMEGS+VET +ILEAG
Sbjct:   124 HAAWSSPTGLPAQTLIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAG 183

Query:   212 SVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYL 271
             SVLPPGRRIP+GELW GNPARF+RTLT+EETLEIPKLAVAIN LS  +FSEFLPYST+YL
Sbjct:   184 SVLPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSEFLPYSTIYL 243

Query:   272 EVEKFKKSLGITI 284
             EVEKFKKSLGI I
Sbjct:   244 EVEKFKKSLGIAI 256

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009853 "photorespiration" evidence=RCA;TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0009651 "response to salt stress" evidence=IGI

GO:0009737 "response to abscisic acid stimulus" evidence=IGI

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TIGR_CMR|APH_1197 APH_1197 "hexapeptide transferase family protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 197 (74.4 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 40/96 (41%), Positives = 62/96 (64%)

Query:   164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTG 223
             +T I +FVTIG  C L +CT+     +G  SI+M+ +++E  ++L AGS+L  G+ + +G
Sbjct:    74 DTVIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSG 133

Query:   224 ELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSH 259
             ELWAG PA+F+R +T EE L + K A     LS+ +
Sbjct:   134 ELWAGRPAKFLRMMTEEEILYLQKSAENYIALSRGY 169

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|NSE_0045 NSE_0045 "hexapeptide transferase family protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 201 (75.8 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
 Identities = 38/98 (38%), Positives = 63/98 (64%)

Query:   165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGE 224
             T I  +VT+G  C L +CT+  E  +G  SI+M+G+++E+ +++ AGS++   +RI +GE
Sbjct:    81 TEIGNYVTVGHQCLLHACTLMDETFVGMGSIIMDGAIMESGSMVAAGSLVTSNKRIKSGE 140

Query:   225 LWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSE 262
             LW G PA+FVR LT EE   I + A+    L++ +  +
Sbjct:   141 LWLGRPAKFVRILTAEEISHIRESAIRYAALAEEYIRD 178

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|ECH_1066 ECH_1066 "hexapeptide transferase family protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 174 (66.3 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
 Identities = 35/96 (36%), Positives = 57/96 (59%)

Query:   164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTG 223
             +T I + VT+G  C L +C I     +G  S++M+  ++E + +L +GS++  G+ I +G
Sbjct:    73 DTQIGKMVTVGHSCILHACQIHDYAFVGMGSVVMDKVIMEENTMLASGSLVTKGKIIKSG 132

Query:   224 ELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSH 259
             ELWAG PA+F R L+ EE   I + A     LS+ +
Sbjct:   133 ELWAGRPAKFFRMLSEEEINHIKESASNYIQLSRDY 168

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|Q48AV3 CPS_0032 "Bacterial transferase hexapeptide domain protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 146 (56.5 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 26/91 (28%), Positives = 50/91 (54%)

Query:   171 VTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNP 230
             VT+G  C L  C +    ++G  +I+M+G+++E    + AGS++PP + + +G L+ GNP
Sbjct:    88 VTVGHKCMLHGCQLGDRILVGMGAIIMDGAVIEDDVFIGAGSLVPPNKTLLSGYLYVGNP 147

Query:   231 ARFVRTLTHEETLEIPKLAVAINDLSKSHFS 261
              +  R L   E   + + A+   +L   + +
Sbjct:   148 VKQARPLKESEAAFLKQSAINYVELKNEYLN 178

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_0032 CPS_0032 "bacterial transferase hexapeptide domain protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 146 (56.5 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 26/91 (28%), Positives = 50/91 (54%)

Query:   171 VTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNP 230
             VT+G  C L  C +    ++G  +I+M+G+++E    + AGS++PP + + +G L+ GNP
Sbjct:    88 VTVGHKCMLHGCQLGDRILVGMGAIIMDGAVIEDDVFIGAGSLVPPNKTLLSGYLYVGNP 147

Query:   231 ARFVRTLTHEETLEIPKLAVAINDLSKSHFS 261
              +  R L   E   + + A+   +L   + +
Sbjct:   148 VKQARPLKESEAAFLKQSAINYVELKNEYLN 178

GO:0003824 "catalytic activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81KI7 BAS4655 "Bacterial transferase family protein" [Bacillus anthracis (taxid:1392)]

 Score = 144 (55.7 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
 Identities = 30/82 (36%), Positives = 50/82 (60%)

Query:   167 IERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW 226
             +E  VTIG    L SC I+ + +IG  SI+++G+ +   A + AGS++  G++IP   L 
Sbjct:    73 LEDDVTIGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLA 132

Query:   227 AGNPARFVRTLTHEETLEIPKL 248
              G PA+ VR LT E+  ++ ++
Sbjct:   133 FGRPAKVVRELTEEDRKDMERI 154

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_5010 BA_5010 "bacterial transferase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 144 (55.7 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
 Identities = 30/82 (36%), Positives = 50/82 (60%)

Query:   167 IERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW 226
             +E  VTIG    L SC I+ + +IG  SI+++G+ +   A + AGS++  G++IP   L 
Sbjct:    73 LEDDVTIGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLA 132

Query:   227 AGNPARFVRTLTHEETLEIPKL 248
              G PA+ VR LT E+  ++ ++
Sbjct:   133 FGRPAKVVRELTEEDRKDMERI 154

GO:0003824 "catalytic activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q482R8 CPS_2224 "Bacterial transferase family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 153 (58.9 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
 Identities = 26/63 (41%), Positives = 43/63 (68%)

Query:    65 IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERC 124
             I  LG+  PK++   ++AP+  + G+V + + ASVW   V+R DL+K+T+G  SN+Q+ C
Sbjct:     2 IFQLGKHSPKISASCFIAPSANVIGKVDIAENASVWFNVVIRADLDKVTIGENSNIQDGC 61

Query:   125 VLH 127
             +LH
Sbjct:    62 ILH 64

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_2224 CPS_2224 "bacterial transferase family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 153 (58.9 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
 Identities = 26/63 (41%), Positives = 43/63 (68%)

Query:    65 IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERC 124
             I  LG+  PK++   ++AP+  + G+V + + ASVW   V+R DL+K+T+G  SN+Q+ C
Sbjct:     2 IFQLGKHSPKISASCFIAPSANVIGKVDIAENASVWFNVVIRADLDKVTIGENSNIQDGC 61

Query:   125 VLH 127
             +LH
Sbjct:    62 ILH 64

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0015028601 SubName- Full=Putative uncharacterized protein; (251 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	284
PLN02472	246	PLN02472, PLN02472, uncharacterized protein	1e-149
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	6e-59
PLN02296	269	PLN02296, PLN02296, carbonate dehydratase	3e-42
COG0663	176	COG0663, PaaY, Carbonic anhydrases/acetyltransfera	1e-41
cd04650	154	cd04650, LbH_FBP, Ferripyochelin Binding Protein (	3e-27
cd04745	155	cd04745, LbH_paaY_like, paaY-like: This group is c	2e-21
TIGR02287	192	TIGR02287, PaaY, phenylacetic acid degradation pro	1e-15
PRK13627	196	PRK13627, PRK13627, carnitine operon protein CaiE;	2e-13
cd03359	161	cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p2	1e-11
cd00710	167	cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (	2e-11
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	1e-06
cd04647	109	cd04647, LbH_MAT_like, Maltose O-acyltransferase (	1e-05
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	6e-05
COG0110	190	COG0110, WbbJ, Acetyltransferase (isoleucine patch	8e-05
TIGR02353	695	TIGR02353, NRPS_term_dom, non-ribosomal peptide sy	9e-05
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	1e-04
COG0448	393	COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb	0.002
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	0.003

>gnl|CDD|215263 PLN02472, PLN02472, uncharacterized protein

 Score =  416 bits (1070), Expect = e-149
 Identities = 211/284 (74%), Positives = 224/284 (78%), Gaps = 38/284 (13%)

Query: 1   MAALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYR 60
             +LARI RRALT+  +    +RR F+  AAA AT            ITPS DRVKWDYR
Sbjct: 1   ATSLARIARRALTSTAAAQ--LRRGFAAEAAAAAT-----------PITPSPDRVKWDYR 47

Query: 61  GQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNV 120
           GQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTV DGASVW G+VLRGDLNKITVGFCSNV
Sbjct: 48  GQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNV 107

Query: 121 QERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR 180
           QERCVLHAAWNSP    G                      LPAET I+R+VTIGAY  LR
Sbjct: 108 QERCVLHAAWNSP---TG----------------------LPAETLIDRYVTIGAYSLLR 142

Query: 181 SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE 240
           SCTIEPECIIGQHSILMEGS+VETH+ILEAGSVLPPGRRIPTGELWAGNPARFVRTLT+E
Sbjct: 143 SCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTNE 202

Query: 241 ETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 284
           ETLEIPKLAVAINDLS+SHFSEFLPYST YLEVEK KKSLGI +
Sbjct: 203 ETLEIPKLAVAINDLSQSHFSEFLPYSTAYLEVEKLKKSLGIAL 246

Length = 246

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score =  184 bits (470), Expect = 6e-59
 Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 31/184 (16%)

Query: 74  KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSP 133
           ++   A++APN  + G VT+ +G+SVW G+VLRGD+N I +G  +N+Q+  VLH     P
Sbjct: 1   EIDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYP 60

Query: 134 YRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQH 193
                                          T I   VT+G    L  CTI   C+IG  
Sbjct: 61  -------------------------------TIIGDNVTVGHGAVLHGCTIGDNCLIGMG 89

Query: 194 SILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAIN 253
           +I+++G+++   +I+ AGS++PPG+ IP G L AG+PA+ VR LT EE  E+ + A    
Sbjct: 90  AIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELTDEEIAELRESAEHYV 149

Query: 254 DLSK 257
           +L+K
Sbjct: 150 ELAK 153

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|215167 PLN02296, PLN02296, carbonate dehydratase

 Score =  145 bits (368), Expect = 3e-42
 Identities = 70/191 (36%), Positives = 107/191 (56%), Gaps = 25/191 (13%)

Query: 72  VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWN 131
            P V  DA+VAP+  + G V V  G+S+W G VLRGD+N I+VG  +N+Q+  ++H A  
Sbjct: 52  APVVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA-- 109

Query: 132 SPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIG 191
                               ++N   ++     T I   VTIG    L  CT+E E  +G
Sbjct: 110 --------------------KTN---LSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVG 146

Query: 192 QHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVA 251
             + L++G +VE HA++ AG+++    RIP+GE+WAGNPA+F+R LT EE   I + A  
Sbjct: 147 MGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLTEEEIAFISQSATN 206

Query: 252 INDLSKSHFSE 262
            ++L++ H +E
Sbjct: 207 YSNLAQVHAAE 217

Length = 269

>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

 Score =  141 bits (357), Expect = 1e-41
 Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 31/196 (15%)

Query: 72  VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWN 131
            PK+   A+VAP+  + G V +  G S+WPG+VLRGD+  I +G  +N+Q+  V+HA   
Sbjct: 11  SPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPG 70

Query: 132 SPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIG 191
            P                                +I   VTIG    +  CTI    +IG
Sbjct: 71  YP-------------------------------VTIGDDVTIGHGAVVHGCTIGDNVLIG 99

Query: 192 QHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVA 251
             + +++G+++   +I+ AG+++ PG+ IP G L  G+PA+ VR L  EE   + + A  
Sbjct: 100 MGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDDEELAWLRENAEN 159

Query: 252 INDLSKSHFSEFLPYS 267
              L+  + +      
Sbjct: 160 YVKLADRYLAGLKETQ 175

Length = 176

>gnl|CDD|100055 cd04650, LbH_FBP, Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

 Score =  103 bits (258), Expect = 3e-27
 Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 31/177 (17%)

Query: 73  PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS 132
           P+++  AYV P   + G V + +  SVW  +V+RGD + I +G  SNVQE   +H     
Sbjct: 1   PRISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGY 60

Query: 133 PYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQ 192
           P                               T I  +VTIG    +    +    I+G 
Sbjct: 61  P-------------------------------TEIGDYVTIGHNAVVHGAKVGNYVIVGM 89

Query: 193 HSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLA 249
            +IL+ G+ +  H I+ AG+V+ PG+ IP   L  G PA+ VR LT EE   I K A
Sbjct: 90  GAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLTEEEIEWIKKNA 146

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. Length = 154

>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

 Score = 87.8 bits (218), Expect = 2e-21
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 31/169 (18%)

Query: 73  PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS 132
           P V   ++V P  VL G V +     + P + LRGD  +I +   +NVQ+ CV+H     
Sbjct: 1   PVVDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHG---- 56

Query: 133 PYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQ 192
              F G                         +T +E    IG    L  CTI    ++G 
Sbjct: 57  ---FPGQ------------------------DTVLEENGHIGHGAILHGCTIGRNALVGM 89

Query: 193 HSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
           ++++M+G+++   +I+ A + +  G  IP   L AG+PA+ +R L+ EE
Sbjct: 90  NAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDEE 138

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. Length = 155

>gnl|CDD|131340 TIGR02287, PaaY, phenylacetic acid degradation protein PaaY

 Score = 73.4 bits (180), Expect = 1e-15
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 31/169 (18%)

Query: 73  PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS 132
           P V  +AYV P  VL G V +     V P + LRGD  +I +   +N+Q+ CV+H     
Sbjct: 9   PVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMH----- 63

Query: 133 PYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQ 192
                GF                        +T +E    +G    L  C +    ++G 
Sbjct: 64  -----GFPGQ---------------------DTVVEENGHVGHGAILHGCIVGRNALVGM 97

Query: 193 HSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
           ++++M+G+++  ++I+ A + +  G  +P   L  G+PA+ +R L+ +E
Sbjct: 98  NAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIRELSEQE 146

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator [Energy metabolism, Other]. Length = 192

>gnl|CDD|184189 PRK13627, PRK13627, carnitine operon protein CaiE; Provisional

 Score = 67.1 bits (164), Expect = 2e-13
 Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 38/186 (20%)

Query: 72  VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWN 131
           +P V   A+V P+ VL G V V  G  + P + LRGD  ++ V   +N+Q+ C++H    
Sbjct: 10  IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMH---- 65

Query: 132 SPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIG 191
                 G+                        +T +     IG    L  C I  + ++G
Sbjct: 66  ------GYCDT---------------------DTIVGENGHIGHGAILHGCVIGRDALVG 98

Query: 192 QHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE-------TLE 244
            +S++M+G+++   +I+ A S +  G +    +L  G PAR VR+++ +E       T E
Sbjct: 99  MNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSDDELHWKRLNTKE 158

Query: 245 IPKLAV 250
              L  
Sbjct: 159 YQDLVG 164

Length = 196

>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 31/164 (18%)

Query: 84  NVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLL 143
           N+VL G+  +          ++RGDL  +++G    + E CV+   +    + V F  L 
Sbjct: 21  NIVLNGKTII------QSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLH 74

Query: 144 IDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVE 203
           I         + ++I     E  +     IG+Y       I   C+IG+  I+ +     
Sbjct: 75  I--------GDYVFIG----ENCVVNAAQIGSYVH-----IGKNCVIGRRCIIKDC---- 113

Query: 204 THAILEAGSVLPPGRRIPTGELWAGNPARFVRTL--THEETLEI 245
               +  G+V+PP   IP   + +G PARF+  L    +E +E 
Sbjct: 114 --VKILDGTVVPPDTVIPPYSVVSGRPARFIGELPECTQELMEE 155

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 161

>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 41/161 (25%)

Query: 73  PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD-LNKITVGFCSNVQERCVLHAAWN 131
           P +   AYV P  V+ G V + D   V PG+ +R D    I +G   N+Q+  V+HA   
Sbjct: 3   PVIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHAL-- 60

Query: 132 SPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL--RSCTIEPECI 189
                                    Y  W+    SI       A+ ++      I   C 
Sbjct: 61  -----------------------EGYSVWIGKNVSI-------AHGAIVHGPAYIGDNCF 90

Query: 190 IGQHSILM-----EGSMVETHAILEAGSVLPPGRRIPTGEL 225
           IG  S++      +  ++  +A+++ G  +PPGR +P G +
Sbjct: 91  IGFRSVVFNAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAV 130

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. Length = 167

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 50/158 (31%)

Query: 79  AYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVG 138
            ++  +V +   V +    S++ G  +  D          +V               F+G
Sbjct: 11  VFIENDVKIGDNVKIQSNVSIYEGVTI-ED----------DV---------------FIG 44

Query: 139 -FVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILM 197
             V    DL          Y  W    T+++R  +IGA     + TI P   IG      
Sbjct: 45  PNVVFTNDLYPRSKI----YRKWELKGTTVKRGASIGA-----NATILPGVTIG------ 89

Query: 198 EGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVR 235
           E ++V       AG+V+   + +P   L  GNPAR + 
Sbjct: 90  EYALV------GAGAVVT--KDVPPYALVVGNPARIIG 119

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 22/89 (24%)

Query: 166 SIERFVTIGAYCSLRSC--------------------TIEPECIIGQHSILMEGSMVETH 205
           +I   V IG   ++                        I  +  IG + +++ G  +   
Sbjct: 23  TIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDG 82

Query: 206 AILEAGSVLPPGRRIPTGELWAGNPARFV 234
           A++ AGSV+   + +P   + AGNPA+ +
Sbjct: 83  AVVGAGSVVT--KDVPPNSIVAGNPAKVI 109

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. Length = 109

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 42.5 bits (101), Expect = 6e-05
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 164 ETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPT 222
           +  I  +V I    +L     I     IG  + +++G  +   A++ AG+V+   + IP 
Sbjct: 126 DCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAVVGAGAVVT--KDIPD 183

Query: 223 GELWAGNPAR 232
           G +  G PA+
Sbjct: 184 GGVVVGVPAK 193

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 173 IGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRR-IPTGELWAGNPA 231
           IGA       TI  +  IG  ++++ G  +   A++ AGSV+    + +P   + AGNPA
Sbjct: 116 IGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVV---TKDVPPYGIVAGNPA 172

Query: 232 RFVRTLTHEETLE 244
           R +R       + 
Sbjct: 173 RVIRKRDVVAKIG 185

Length = 190

>gnl|CDD|233832 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 19/49 (38%), Positives = 25/49 (51%)

Query: 183 TIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPA 231
           T+  +  IG  S L   + +   A L  GS L  G+ IP GE W G+PA
Sbjct: 162 TLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQGGQSIPDGERWHGSPA 210

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 160 WLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAI------LEAGSV 213
            L  +T I     IG  C ++  TI    +I   S++ EG+++   A       L  G+V
Sbjct: 29  ILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVI-EGAVIGNGATVGPFAHLRPGTV 87

Query: 214 LPPGRRI 220
           L  G  I
Sbjct: 88  LGEGVHI 94

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 171 VTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI 220
           V IG    + +  I P+  IG+ ++L         AI++   V+  G  I
Sbjct: 318 VRIGKGSVIENSVIMPDVEIGEGAVL-------RRAIIDKNVVIGEGVVI 360

Length = 393

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 35/112 (31%)

Query: 91  VTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSC 150
           V + +G  + P +V+RG    + +G   N+    V+ AA                     
Sbjct: 1   VFIGEGVKIHPKAVIRG---PVVIGDNVNIGPGAVIGAA--------------------- 36

Query: 151 PRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMV 202
                         T I   V IGA     +  I     IG ++++  G++V
Sbjct: 37  ------TGPNEKNPTIIGDNVEIGA-----NAVIHGGVKIGDNAVIGAGAVV 77

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	284
PLN02472	246	uncharacterized protein	100.0
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	100.0
PLN02296	269	carbonate dehydratase	99.97
PRK13627	196	carnitine operon protein CaiE; Provisional	99.97
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.96
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.94
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.93
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.92
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.92
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.92
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.91
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.89
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.89
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.88
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.88
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.88
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.88
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.86
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.85
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.84
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.83
PRK10502	182	putative acyl transferase; Provisional	99.82
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.82
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.82
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.81
PRK10092	183	maltose O-acetyltransferase; Provisional	99.8
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.8
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.79
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.78
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.77
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.77
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	99.76
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.75
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.75
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.75
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.75
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.74
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.74
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.74
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.73
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.73
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.73
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.72
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	99.71
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	99.71
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.71
PRK11132	273	cysE serine acetyltransferase; Provisional	99.71
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.71
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.71
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.7
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.7
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.7
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.69
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	99.69
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.69
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.68
PLN02694	294	serine O-acetyltransferase	99.68
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.68
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.67
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.67
PLN02739	355	serine acetyltransferase	99.67
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.67
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.67
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.67
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.66
PRK13627	196	carnitine operon protein CaiE; Provisional	99.64
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.64
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.63
PLN02296	269	carbonate dehydratase	99.63
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.62
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.62
PLN02472	246	uncharacterized protein	99.61
PLN02357	360	serine acetyltransferase	99.61
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.6
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.6
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.59
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	99.58
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.58
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.57
PRK10191	146	putative acyl transferase; Provisional	99.56
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.56
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.55
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.54
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.51
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.51
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.5
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.5
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.49
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.49
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.48
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.48
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.48
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.48
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.47
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.46
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.46
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.45
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.41
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.41
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.4
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.4
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.39
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	99.38
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.38
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.38
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.38
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.37
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.35
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.35
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.31
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.3
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.3
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	99.29
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.27
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.26
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.25
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.24
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.23
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.22
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.22
PRK11132	273	cysE serine acetyltransferase; Provisional	99.21
PRK10502	182	putative acyl transferase; Provisional	99.2
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.18
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.18
PRK10191	146	putative acyl transferase; Provisional	99.18
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.18
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.16
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.16
PLN02739	355	serine acetyltransferase	99.15
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.15
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.14
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.13
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.13
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.1
PLN02694	294	serine O-acetyltransferase	99.09
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.07
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.06
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.06
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.05
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.05
PLN02357	360	serine acetyltransferase	99.04
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.03
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.03
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.01
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.0
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.99
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	98.97
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	98.96
PRK10092	183	maltose O-acetyltransferase; Provisional	98.94
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	98.91
KOG1462	433	consensus Translation initiation factor 2B, gamma	98.86
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	98.86
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	98.84
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.84
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	98.84
PLN02241	436	glucose-1-phosphate adenylyltransferase	98.83
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.82
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.73
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.68
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.63
KOG1462	433	consensus Translation initiation factor 2B, gamma	98.63
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.62
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.57
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	98.57
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.57
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	98.57
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.52
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.52
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.51
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.5
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.47
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	98.44
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.4
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.39
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	98.36
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	98.26
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	98.2
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	98.08
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.07
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.73
COG4801	277	Predicted acyltransferase [General function predic	97.41
COG4801	277	Predicted acyltransferase [General function predic	96.95
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	87.66
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	86.76
PF04613	72	LpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	84.99
PF13720	83	Acetyltransf_11: Udp N-acetylglucosamine O-acyltra	84.39

>PLN02472 uncharacterized protein

Probab=100.00  E-value=3.8e-37  Score=270.47  Aligned_cols=246  Identities=85%  Similarity=1.319  Sum_probs=217.5

Q ss_pred             ChhhhhhhHhhhhhhcccchhhhhhhhhhhhhhccccccccccCCCCCCCCcccccccccccceeeecCCCCceeCCCcE
Q 039842            1 MAALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYRGQRQIIPLGQWVPKVAVDAY   80 (284)
Q Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   80 (284)
                      |++|+|+.+..++.....  .+++.++..++.+.+           ...+...+.+|+|..++++..+....|.++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~   67 (246)
T PLN02472          1 ATSLARIARRALTSTAAA--QLRRGFAAEAAAAAT-----------PITPSPDRVKWDYRGQRQIIPLGQWVPKVAVDAY   67 (246)
T ss_pred             ChhHHHHHHHhhhhhhhh--hhcCCcchhhhcccC-----------CCCCcccccccCcCCcceEEecCCcCCccCCCCE
Confidence            788999988888766555  344444443333321           1345678899999999999999999999999999


Q ss_pred             EcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccccc
Q 039842           81 VAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAW  160 (284)
Q Consensus        81 I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  160 (284)
                      |.|++.+.+++.||+++.|+++++|+|+.+.++||++|.|+++|+|+.....+..                         
T Consensus        68 I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~-------------------------  122 (246)
T PLN02472         68 VAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTG-------------------------  122 (246)
T ss_pred             ECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccC-------------------------
Confidence            9999999999999999999999999999889999999999999999865421111                         


Q ss_pred             CCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842          161 LPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       161 ~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      .+.+++||++|.||++|+|++++||++|+||.+|+|.++++||++++|+++++|.++..+|++.++.|+||++++.+.++
T Consensus       123 i~~~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~~~  202 (246)
T PLN02472        123 LPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTNE  202 (246)
T ss_pred             CCCCcEECCCCEECCCcEECCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCCHH
Confidence            23468999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCC
Q 039842          241 ETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI  284 (284)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (284)
                      +...++...+.|.++.+.|.+.|.++...|.+.+++++++++.+
T Consensus       203 ~~~~l~~~a~~y~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (246)
T PLN02472        203 ETLEIPKLAVAINDLSQSHFSEFLPYSTAYLEVEKLKKSLGIAL  246 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999864

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=100.00  E-value=7.2e-34  Score=233.72  Aligned_cols=167  Identities=33%  Similarity=0.581  Sum_probs=157.2

Q ss_pred             cCCCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccc
Q 039842           68 LGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ  147 (284)
Q Consensus        68 ~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~  147 (284)
                      +....|.++++++|+|++.|.++|+||+++.|+++++|+||..++.||++|.|+++|+|+....                
T Consensus         7 ~~~~~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~----------------   70 (176)
T COG0663           7 YEGLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPG----------------   70 (176)
T ss_pred             ccCCCCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCC----------------
Confidence            3456789999999999999999999999999999999999999999999999999999997643                


Q ss_pred             ccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842          148 MSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA  227 (284)
Q Consensus       148 ~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~  227 (284)
                                     .+++||++|+||++++||+|+|||+|+||.|++|.+|+.||++|+|++|++|.+++.+|+++++.
T Consensus        71 ---------------~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~  135 (176)
T COG0663          71 ---------------YPVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVV  135 (176)
T ss_pred             ---------------CCeEECCCcEEcCccEEEEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEee
Confidence                           35999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCceeeccCCHHHHhhhhhhHHHHHHHHHHHHhcccc
Q 039842          228 GNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLP  265 (284)
Q Consensus       228 G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (284)
                      |.|+++++++.+++..+++...+.|.++.+.|...+++
T Consensus       136 G~Pak~~r~l~~~~~~~~~~~a~~Yv~~~~~~~~~~~~  173 (176)
T COG0663         136 GSPAKVVRPLDDEELAWLRENAENYVKLADRYLAGLKE  173 (176)
T ss_pred             cCcceeeecCChhHhhhhhHhHHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999999999988766544

>PLN02296 carbonate dehydratase

Probab=99.97  E-value=2.4e-29  Score=223.85  Aligned_cols=186  Identities=38%  Similarity=0.605  Sum_probs=165.8

Q ss_pred             ccccceeeecCCCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCccccc
Q 039842           59 YRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVG  138 (284)
Q Consensus        59 ~~~~~~~~~~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g  138 (284)
                      +..++.++.+....|.++++++|+|++.+.+++.||++|.|+++|+|.++.+.+.||++|.|+++|+|+........   
T Consensus        39 ~~~~~~~~~~~~~~p~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g---  115 (269)
T PLN02296         39 LSRHRTLMNIFDKAPVVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSG---  115 (269)
T ss_pred             HHHHHHHHhhcCCCCccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccC---
Confidence            45566667777888999999999999999999999999999999999988778999999999999999854321100   


Q ss_pred             ceeeeecccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCC
Q 039842          139 FVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGR  218 (284)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~  218 (284)
                                            ...+++||++|+||++|+|++++|||+|+||.+++|.++++|+++++|+++++|.+++
T Consensus       116 ----------------------~~~~siIG~~v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~  173 (269)
T PLN02296        116 ----------------------KVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNT  173 (269)
T ss_pred             ----------------------CCCCcEeCCCCEECCCceecCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCC
Confidence                                  1235899999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCEEeccCceeeccCCHHHHhhhhhhHHHHHHHHHHHHhccccchHH
Q 039842          219 RIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTV  269 (284)
Q Consensus       219 ~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (284)
                      .||+++++.|+||++++.+.+++..++...+..|.++.+.|...+.+..+.
T Consensus       174 ~I~~~~~~~G~PA~~ir~~~~~~~~~~~~~a~~y~~l~~~~~~~~~~~~~~  224 (269)
T PLN02296        174 RIPSGEVWAGNPAKFLRKLTEEEIAFISQSATNYSNLAQVHAAENAKSFDE  224 (269)
T ss_pred             EeCCCeEEeccCcEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            999999999999999999999999999999999999999997776665553

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.97  E-value=8.7e-29  Score=211.20  Aligned_cols=173  Identities=26%  Similarity=0.421  Sum_probs=158.0

Q ss_pred             eecCCCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeec
Q 039842           66 IPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLID  145 (284)
Q Consensus        66 ~~~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~  145 (284)
                      +.+....|.++++++|++++.|.+++.||++|.|+++++|+++.+.++||++|.|+++|+|+....              
T Consensus         4 ~~~~~~~p~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~--------------   69 (196)
T PRK13627          4 YAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCD--------------   69 (196)
T ss_pred             cccCCCCCccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCC--------------
Confidence            345567788999999999999999999999999999999998877899999999999999975432              


Q ss_pred             ccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842          146 LQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL  225 (284)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v  225 (284)
                                       .+++|++++.||+++.+++++||++|+||.+++|.++++||++++|+++++|.++..+|++++
T Consensus        70 -----------------~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~  132 (196)
T PRK13627         70 -----------------TDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQL  132 (196)
T ss_pred             -----------------CCCEECCCCEECCCcEEeeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcE
Confidence                             258999999999999999999999999999999999999999999999999998889999999


Q ss_pred             EeccCceeeccCCHHHHhhhhhhHHHHHHHHHHHHhccccchHH
Q 039842          226 WAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTV  269 (284)
Q Consensus       226 v~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (284)
                      ++|+||++++.+.+++..++...+..|.++.+.|.+.+.+...+
T Consensus       133 ~~G~Pa~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~  176 (196)
T PRK13627        133 LMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPL  176 (196)
T ss_pred             EEecCCEEeccCCHHHHHHHHhhHHHHHHHHHHHHHhccccCCC
Confidence            99999999999999999999999999999999997766654433

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.96  E-value=8.4e-29  Score=210.63  Aligned_cols=169  Identities=25%  Similarity=0.432  Sum_probs=156.0

Q ss_pred             ecCCCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecc
Q 039842           67 PLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDL  146 (284)
Q Consensus        67 ~~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~  146 (284)
                      .+....|.++++++|+|++.|.+++.||++|.|+++|+|.|+.++++||++|.|+++|+|+....               
T Consensus         3 ~~~~~~p~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~---------------   67 (192)
T TIGR02287         3 QIDGLTPVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPG---------------   67 (192)
T ss_pred             CcCCcCCcCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCC---------------
Confidence            44567889999999999999999999999999999999998888899999999999999964321               


Q ss_pred             cccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842          147 QMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW  226 (284)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv  226 (284)
                                      .+++||+++.|+++++|++++||++|+||.+++|.++++||++++|+++++|.++..+|+++++
T Consensus        68 ----------------~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~  131 (192)
T TIGR02287        68 ----------------QDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLV  131 (192)
T ss_pred             ----------------CCCeECCCCEECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEE
Confidence                            2589999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCceeeccCCHHHHhhhhhhHHHHHHHHHHHHhccccc
Q 039842          227 AGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPY  266 (284)
Q Consensus       227 ~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (284)
                      +|+|+++++.+..++..++...+..|.++.+.|.+.+.+.
T Consensus       132 ~G~Pak~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~  171 (192)
T TIGR02287       132 VGSPAKVIRELSEQELAWKKQGTHEYQVLATRCKQTLHQC  171 (192)
T ss_pred             EccCCEEeccCCHHHHHHHHHhHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999997765544

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.94  E-value=3.8e-25  Score=182.51  Aligned_cols=154  Identities=30%  Similarity=0.508  Sum_probs=139.8

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR  152 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (284)
                      |.++++++|+++++|.+++.||++|.|+++++|.++.+++.||++|.|+++|+|+...                      
T Consensus         1 ~~i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~----------------------   58 (155)
T cd04745           1 PVVDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFP----------------------   58 (155)
T ss_pred             CccCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecC----------------------
Confidence            3568899999999999999999999999999998776679999999999999996421                      


Q ss_pred             CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCce
Q 039842          153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR  232 (284)
Q Consensus       153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~  232 (284)
                               ..+++||++++|++++.+.+++||++|+||.++.|.++++|+++++|+++++|.++..|+++++++|+|++
T Consensus        59 ---------~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~  129 (155)
T cd04745          59 ---------GQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAK  129 (155)
T ss_pred             ---------CCCeEEcCCCEECCCcEEECCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCce
Confidence                     13589999999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             eeccCCHHHHhhhhhhHHHHHHHHH
Q 039842          233 FVRTLTHEETLEIPKLAVAINDLSK  257 (284)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~  257 (284)
                      .++.++++++++.......|..|.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~  154 (155)
T cd04745         130 VIRELSDEEVAWKTRGTKEYQQLAA  154 (155)
T ss_pred             EeccCCHHHHHHHHHHHHHHHHhhc
Confidence            9999999988888777777776653

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.93  E-value=1.6e-24  Score=178.61  Aligned_cols=153  Identities=37%  Similarity=0.569  Sum_probs=141.1

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR  152 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (284)
                      |.+.++++|++.+.|.+++.||++|.|++++.|.++...++||++|.|+++|.|....                      
T Consensus         1 ~~~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~----------------------   58 (154)
T cd04650           1 PRISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDH----------------------   58 (154)
T ss_pred             CccCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCC----------------------
Confidence            3578899999999999999999999999999998765679999999999999997531                      


Q ss_pred             CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCce
Q 039842          153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR  232 (284)
Q Consensus       153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~  232 (284)
                               ..+++||+++.|+.++.+++++||++|+||.++.+.++++|++++++++++.|.++.+++++++++|+|++
T Consensus        59 ---------~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~  129 (154)
T cd04650          59 ---------GYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAK  129 (154)
T ss_pred             ---------CCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCce
Confidence                     12589999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCHHHHhhhhhhHHHHHHHH
Q 039842          233 FVRTLTHEETLEIPKLAVAINDLS  256 (284)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~  256 (284)
                      +++.++++++.+++...+.|-++.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~  153 (154)
T cd04650         130 VVRKLTEEEIEWIKKNAEEYVELA  153 (154)
T ss_pred             EeccCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999888887654

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.92  E-value=8.2e-24  Score=174.09  Aligned_cols=151  Identities=42%  Similarity=0.717  Sum_probs=141.0

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      ++++++|+|+++|.+++.||+++.|++++.|.++..+++||++|.|+++|+|.....                       
T Consensus         2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~-----------------------   58 (153)
T cd04645           2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPG-----------------------   58 (153)
T ss_pred             ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCC-----------------------
Confidence            678999999999999999999999999999998777899999999999999975422                       


Q ss_pred             ccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                              .+++||+++.|+.+|.+.+++||++++|+.++.|.++++|+++|+|+++++|.++..+++++++.|.|+++.
T Consensus        59 --------~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~  130 (153)
T cd04645          59 --------YPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVV  130 (153)
T ss_pred             --------CCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhc
Confidence                    248999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCHHHHhhhhhhHHHHHHHH
Q 039842          235 RTLTHEETLEIPKLAVAINDLS  256 (284)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~  256 (284)
                      ++++.++..++++....|.++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~  152 (153)
T cd04645         131 RELTDEEIAELRESAEHYVELA  152 (153)
T ss_pred             ccCCHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999888875

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.92  E-value=1.5e-24  Score=194.37  Aligned_cols=33  Identities=18%  Similarity=0.191  Sum_probs=30.8

Q ss_pred             ChhhhhhhHhhhhhhcccchhhhhhhhhhhhhhcc
Q 039842            1 MAALARITRRALTTQLSHGHVIRRAFSTSAAATAT   35 (284)
Q Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   35 (284)
                      ||+|.++...+++|+.++  +|+..+.++.|+++.
T Consensus        28 va~l~~a~~~~i~f~~~~--ky~~~l~~s~Agavi   60 (338)
T COG1044          28 VAPLDEAQPGDISFLANP--KYRKELKTSRAGAVI   60 (338)
T ss_pred             cchhhhcCcccceeecCh--hhhhhcccCcccEEE
Confidence            689999999999999999  999999999999883

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.92  E-value=7.6e-24  Score=176.29  Aligned_cols=136  Identities=18%  Similarity=0.248  Sum_probs=121.0

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS  153 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (284)
                      +|+++++|++++.|.+++.||+++.|++++.|..+.++++||++|.|+++|+|.........                  
T Consensus         1 ~~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~------------------   62 (164)
T cd04646           1 KIAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPA------------------   62 (164)
T ss_pred             CcCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCC------------------
Confidence            37889999999999999999999999999999755567999999999999999765331110                  


Q ss_pred             CccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCcee
Q 039842          154 NSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARF  233 (284)
Q Consensus       154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~  233 (284)
                             ...++.||+++.|..++.+.+++|||+|+||.+++|.++++||++|+|+++++|.++..+|+++++.|+|+..
T Consensus        63 -------~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~  135 (164)
T cd04646          63 -------EPKPMIIGSNNVFEVGCKCEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLR  135 (164)
T ss_pred             -------CCCCeEECCCCEECCCcEEEeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEE
Confidence                   2245899999999999999999999999999999999999999999999999999888999999999999865


Q ss_pred             e
Q 039842          234 V  234 (284)
Q Consensus       234 ~  234 (284)
                      .
T Consensus       136 ~  136 (164)
T cd04646         136 R  136 (164)
T ss_pred             E
Confidence            5

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.91  E-value=2e-24  Score=197.94  Aligned_cols=54  Identities=24%  Similarity=0.307  Sum_probs=48.1

Q ss_pred             ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeecc
Q 039842          181 SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRT  236 (284)
Q Consensus       181 ~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~  236 (284)
                      +++||++|+||.++.|.++++||++++|+++++|.  +++|++.++.|+||+..++
T Consensus       253 ~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~--~~v~~~~~~~G~pa~~~~~  306 (324)
T TIGR01853       253 STKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVT--KSIPPPGVYGGIPARPNKE  306 (324)
T ss_pred             ccEECCCeEEccccccccCCEECCCCEEccCCEeC--CcCCCCcEEEccCccHHHH
Confidence            47888888999999999999999999999999999  8899999999999986554

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.89  E-value=5.4e-22  Score=164.70  Aligned_cols=155  Identities=21%  Similarity=0.375  Sum_probs=133.6

Q ss_pred             eCCCcEEcCCcEEec--ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842           75 VAVDAYVAPNVVLAG--QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR  152 (284)
Q Consensus        75 i~~~~~I~~~a~i~~--~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (284)
                      ...++.|++.+.|.+  ++.||+++.|++++.|.++..+++||++|.|+++|+|++..+....                 
T Consensus         4 ~~~~~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~-----------------   66 (161)
T cd03359           4 TASGNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSK-----------------   66 (161)
T ss_pred             CcCCCeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCC-----------------
Confidence            456778899999855  9999999999999999987778999999999999999865431110                 


Q ss_pred             CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCce
Q 039842          153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR  232 (284)
Q Consensus       153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~  232 (284)
                            .....+++||++++|++++++..++||++++||.++.|++++.|+++++|+++++|.++..+++++++.|+|++
T Consensus        67 ------~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~  140 (161)
T cd03359          67 ------GVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPAR  140 (161)
T ss_pred             ------CccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccE
Confidence                  00223589999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCHHHHhhhhhhHHHH
Q 039842          233 FVRTLTHEETLEIPKLAVAI  252 (284)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~  252 (284)
                      +++++++.+.+++.....+|
T Consensus       141 ~i~~~~~~~~~~~~~~~~~~  160 (161)
T cd03359         141 FIGELPECTQELMEEETKEY  160 (161)
T ss_pred             EEEecchhhhHHHHhhHhhc
Confidence            99999998877666555443

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.89  E-value=2.9e-22  Score=185.45  Aligned_cols=51  Identities=25%  Similarity=0.318  Sum_probs=33.1

Q ss_pred             cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCC-CCEEeccCceee
Q 039842          182 CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPT-GELWAGNPARFV  234 (284)
Q Consensus       182 v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~-~~vv~G~pa~~~  234 (284)
                      ++||++|+||.++.|.++++||++++|++++.|.  .++|+ +.++.|+|++..
T Consensus       262 ~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v~--~~i~~~~~~~~G~pa~~~  313 (343)
T PRK00892        262 TKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVT--KSIPEPGEYSSGIPAQPN  313 (343)
T ss_pred             CEECCceEECCCCEEcCCCEECCCCEEecCCeeC--CccCCCCeEEEeecCchH
Confidence            5666666666666666666666666666666666  56666 566666666643

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.88  E-value=1.2e-21  Score=174.16  Aligned_cols=148  Identities=20%  Similarity=0.284  Sum_probs=102.2

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecC---------CCcEEECCCCEECCCCEEecCCCCC--ccccccee
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD---------LNKITVGFCSNVQERCVLHAAWNSP--YRFVGFVS  141 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~---------~~~v~IG~~~~I~~~~~I~~~~~~~--~~~~g~~~  141 (284)
                      ..|++++.|++++.|.+++.||++|.|++++.|.+.         ...++||++|.|+++|+|+......  ...+|.++
T Consensus        30 v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~  109 (254)
T cd03351          30 VEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNN  109 (254)
T ss_pred             CEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECCCC
Confidence            356666666677777777777777777777777421         1247777777777777776543321  22333333


Q ss_pred             eeecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842          142 LLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI  220 (284)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I  220 (284)
                      .+....            ....+++||++|.|+.++.+ ++++|||+|+||+++.|.++++||++++|+++++|.  .+|
T Consensus       110 ~I~~~~------------~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~--~~i  175 (254)
T cd03351         110 LLMAYV------------HVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVV--QDV  175 (254)
T ss_pred             EECCCC------------EECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEe--eec
Confidence            332211            11123555555555555555 469999999999999999999999999999999999  779


Q ss_pred             CCCCEEeccCceee
Q 039842          221 PTGELWAGNPARFV  234 (284)
Q Consensus       221 ~~~~vv~G~pa~~~  234 (284)
                      +++++++|+|++..
T Consensus       176 ~~~~~~~G~~~~~~  189 (254)
T cd03351         176 PPYVIAAGNRARLR  189 (254)
T ss_pred             CCCeEEEccCCeEe
Confidence            99999999999754

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.88  E-value=9.5e-22  Score=175.50  Aligned_cols=147  Identities=18%  Similarity=0.279  Sum_probs=96.8

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecC---------CCcEEECCCCEECCCCEEecCCC--CCcccccceee
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD---------LNKITVGFCSNVQERCVLHAAWN--SPYRFVGFVSL  142 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~---------~~~v~IG~~~~I~~~~~I~~~~~--~~~~~~g~~~~  142 (284)
                      .+++++.|++++.|.++++||++|.|++++.|.++         ...+.||++|.|+++|+|+....  .....+|.+++
T Consensus        34 ~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~  113 (262)
T PRK05289         34 VIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNL  113 (262)
T ss_pred             EECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeEECCceE
Confidence            45555555555555556666666666666666321         11366666666666666654431  11123344333


Q ss_pred             eecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842          143 LIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP  221 (284)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~  221 (284)
                      ++...            +..++++||+++.++.++.+ ..++|||+|+||.++.|.++++||++++|+++++|.  ++||
T Consensus       114 I~~~~------------~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~--~di~  179 (262)
T PRK05289        114 LMAYV------------HVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVS--QDVP  179 (262)
T ss_pred             ECCCC------------EECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeeccee--ccCC
Confidence            33221            11224555555555555554 358999999999999999999999999999999999  8999


Q ss_pred             CCCEEeccCceee
Q 039842          222 TGELWAGNPARFV  234 (284)
Q Consensus       222 ~~~vv~G~pa~~~  234 (284)
                      ++++++|+|++..
T Consensus       180 ~~~~~~G~pa~~~  192 (262)
T PRK05289        180 PYVLAEGNPARLR  192 (262)
T ss_pred             CCeEEecccCeEe
Confidence            9999999999985

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.88  E-value=2.1e-21  Score=172.32  Aligned_cols=147  Identities=16%  Similarity=0.308  Sum_probs=106.8

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecC---------CCcEEECCCCEECCCCEEecCCCC-Ccccccceee
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD---------LNKITVGFCSNVQERCVLHAAWNS-PYRFVGFVSL  142 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~---------~~~v~IG~~~~I~~~~~I~~~~~~-~~~~~g~~~~  142 (284)
                      ..+++++.|++++.|.+++.||+++.|++++.|.++         ...++||++|.|+++|+|+.+... ....+|..++
T Consensus        30 v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~  109 (255)
T PRK12461         30 VEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNL  109 (255)
T ss_pred             CEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEecCcccCCcEEEcccce
Confidence            345666666666666667777777777777776421         124677777777777777755421 2234555555


Q ss_pred             eecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842          143 LIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP  221 (284)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~  221 (284)
                      ++...            +..+++.||++|+|+.++.+ ..++|||+|+||.++.|.++++||++++|+++++|.  ++||
T Consensus       110 i~~~~------------~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~--~dVp  175 (255)
T PRK12461        110 LMAYS------------HVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRIS--KDVP  175 (255)
T ss_pred             eccCc------------EECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCceEe--ccCC
Confidence            54331            12235666777777766666 469999999999999999999999999999999999  8899


Q ss_pred             CCCEEeccCcee
Q 039842          222 TGELWAGNPARF  233 (284)
Q Consensus       222 ~~~vv~G~pa~~  233 (284)
                      +++++.|+||+.
T Consensus       176 p~~i~~G~pa~~  187 (255)
T PRK12461        176 PYCMMAGHPTNV  187 (255)
T ss_pred             CCeEEecCcceE
Confidence            999999999995

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.88  E-value=2.5e-21  Score=172.12  Aligned_cols=149  Identities=19%  Similarity=0.303  Sum_probs=116.0

Q ss_pred             CceeCCCcEEcCCcEEecceEECCCCEECCCCEEecC---------CCcEEECCCCEECCCCEEecCCCCC--cccccce
Q 039842           72 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD---------LNKITVGFCSNVQERCVLHAAWNSP--YRFVGFV  140 (284)
Q Consensus        72 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~---------~~~v~IG~~~~I~~~~~I~~~~~~~--~~~~g~~  140 (284)
                      ...+++++.|++++.|.+++.||++|.|+++++|.++         ...++||++|.|+++|+|+......  ...+|..
T Consensus        28 ~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~  107 (254)
T TIGR01852        28 GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNN  107 (254)
T ss_pred             CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCC
Confidence            4567888888888888888999999999999998531         1358899999999999998664321  2334444


Q ss_pred             eeeecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCe
Q 039842          141 SLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRR  219 (284)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~  219 (284)
                      +.+....            ...++++||+++.|+.++.+ ++++|||+|+||+++.|.++++||++++|+++++|.  .+
T Consensus       108 ~~I~~~~------------~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~--~~  173 (254)
T TIGR01852       108 NLLMAYS------------HIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVS--KD  173 (254)
T ss_pred             CEECCCC------------EEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEe--ee
Confidence            4442221            12234677777777777776 569999999999999999999999999999999999  78


Q ss_pred             eCCCCEEeccCceee
Q 039842          220 IPTGELWAGNPARFV  234 (284)
Q Consensus       220 I~~~~vv~G~pa~~~  234 (284)
                      ||++++++|+|++..
T Consensus       174 i~~~~~~~G~pa~~~  188 (254)
T TIGR01852       174 VPPYGLVEGNRARLR  188 (254)
T ss_pred             cCCCcEEecCcCeec
Confidence            999999999999973

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.86  E-value=5e-21  Score=167.53  Aligned_cols=127  Identities=24%  Similarity=0.465  Sum_probs=116.8

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      ++.++.|++++.+.+++.||+++.|++++.|.++   ++||++|.|++++.|..                          
T Consensus        83 vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~a~I~~--------------------------  133 (231)
T TIGR03532        83 KNINARIEPGAIIRDQVIIGDNAVIMMGAVINIG---AEIGEGTMIDMNAVLGG--------------------------  133 (231)
T ss_pred             cccccEECCCCEEeCCeEECCCCEEecCcccCCC---eEECCCCEEccccccCC--------------------------
Confidence            5788899999999999999999999999999654   89999999999998742                          


Q ss_pred             ccccccCCcceEECCCCEECCCceee---------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSLR---------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL  225 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~---------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v  225 (284)
                               +++||++|.||.++.+.         +++||++|+||++++|.++++||++++|+++++|.  .++|++++
T Consensus       134 ---------~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~--~di~~~~v  202 (231)
T TIGR03532       134 ---------RATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVT--EDVPPNTV  202 (231)
T ss_pred             ---------CcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEc--cccCCCcE
Confidence                     48899999999999996         48999999999999999999999999999999999  79999999


Q ss_pred             EeccCceeeccCCHHH
Q 039842          226 WAGNPARFVRTLTHEE  241 (284)
Q Consensus       226 v~G~pa~~~~~~~~~~  241 (284)
                      ++|+||++++.+++++
T Consensus       203 v~G~PA~~i~~~~~~~  218 (231)
T TIGR03532       203 VAGVPAKVIKQVDEKT  218 (231)
T ss_pred             EEecCCEEeccCChhH
Confidence            9999999999988854

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.85  E-value=1.6e-20  Score=160.91  Aligned_cols=137  Identities=19%  Similarity=0.289  Sum_probs=112.1

Q ss_pred             CCCCceeCCCcEEcCCcEE--ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecc
Q 039842           69 GQWVPKVAVDAYVAPNVVL--AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDL  146 (284)
Q Consensus        69 ~~~~~~i~~~~~I~~~a~i--~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~  146 (284)
                      ...++.++++++|.+++.+  +.+++||++++|+.++.|. +.+.++||++|.|+++|.|.+..+...            
T Consensus        52 ~~~~~~ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~-d~~~I~IGd~v~Ig~~v~I~~~~h~~~------------  118 (203)
T PRK09527         52 KEMFATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIV-DDYTVTIGDNVLIAPNVTLSVTGHPVH------------  118 (203)
T ss_pred             HHhhhhcCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEe-cCCCEEECCCCEECCCCEEEeCCCCCC------------
Confidence            3445678999999999997  5799999999999999996 556799999999999999986544110            


Q ss_pred             cccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842          147 QMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW  226 (284)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv  226 (284)
                                        ..+..    ......++++|||+||||++++|.++++||++++|+++++|.  +++|+++++
T Consensus       119 ------------------~~~r~----~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~--kdvp~~~v~  174 (203)
T PRK09527        119 ------------------HELRK----NGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVT--KDIPPNVVA  174 (203)
T ss_pred             ------------------hhhcc----ccccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEc--ccCCCCcEE
Confidence                              00000    001123678999999999999999999999999999999999  789999999


Q ss_pred             eccCceeeccCCHHHH
Q 039842          227 AGNPARFVRTLTHEET  242 (284)
Q Consensus       227 ~G~pa~~~~~~~~~~~  242 (284)
                      +|+||++++++.+++.
T Consensus       175 ~G~PAk~i~~~~~~~~  190 (203)
T PRK09527        175 AGVPCRVIREINDRDK  190 (203)
T ss_pred             EeeCCEEeccCCHHHH
Confidence            9999999999875553

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.84  E-value=3e-19  Score=149.12  Aligned_cols=160  Identities=23%  Similarity=0.361  Sum_probs=121.2

Q ss_pred             CceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCC-CcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccC
Q 039842           72 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDL-NKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSC  150 (284)
Q Consensus        72 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~  150 (284)
                      .|.++++++|+|++.|.+++.||++|+|++++.|.++. ..+.||++|.|++++.|+....                   
T Consensus         2 ~~~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~-------------------   62 (167)
T cd00710           2 EPVIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEG-------------------   62 (167)
T ss_pred             CCEeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCC-------------------
Confidence            36799999999999999999999999999999997542 3699999999999999975321                   


Q ss_pred             CCCCccccccCCcceEECCCCEECCCceeec-cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEecc
Q 039842          151 PRSNSLYIAWLPAETSIERFVTIGAYCSLRS-CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGN  229 (284)
Q Consensus       151 ~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~-v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~  229 (284)
                                  .++.||+++.|++++.|.+ ++||++|+||.++.|. ++.||++|+|++++.|. +..+++++++. .
T Consensus        63 ------------~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~-~  127 (167)
T cd00710          63 ------------YSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-GVEIPPGRYVP-A  127 (167)
T ss_pred             ------------CCEEECCCceECCCCEEeCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-CCEeCCCCEEC-C
Confidence                        2589999999999999976 9999999999999996 79999999999999985 56788887753 3


Q ss_pred             CceeeccCCHHHHhhhhhhHHHHHHHHHHHHhccccchH
Q 039842          230 PARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYST  268 (284)
Q Consensus       230 pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (284)
                      .+.+....+.   ..++.+.+..+++.+..++-+.++.+
T Consensus       128 ~~~v~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~  163 (167)
T cd00710         128 GAVITSQTQA---DALPDVTDSAREFNEKVITVNNELAE  163 (167)
T ss_pred             CCEEcCCCcc---cccccCChhHHHHHHHHhhhhhhhhh
Confidence            3333333322   22333333334444444444444443

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.83  E-value=4.6e-20  Score=157.47  Aligned_cols=149  Identities=17%  Similarity=0.264  Sum_probs=95.6

Q ss_pred             CceeCCCcEEcCCcEEecceEECCCCEECCCCEEecC---------------------------CCcEEECCCCEECCCC
Q 039842           72 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD---------------------------LNKITVGFCSNVQERC  124 (284)
Q Consensus        72 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~---------------------------~~~v~IG~~~~I~~~~  124 (284)
                      .+.+++++.|+|.|.|+++|+||+++.|++.++|.|.                           ...+.||++|.|.+++
T Consensus        15 gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~v   94 (260)
T COG1043          15 GAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFV   94 (260)
T ss_pred             CCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEE
Confidence            3455566666666666666666666666666655543                           1124555555555555


Q ss_pred             EEecCCCC--CcccccceeeeecccccCCCCCccccccCCcceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCCE
Q 039842          125 VLHAAWNS--PYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSM  201 (284)
Q Consensus       125 ~I~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~  201 (284)
                      +|+.++..  ....+|..++++...            +..++++||++|.+..|+.+. .+.|||++.||..+-|...|+
T Consensus        95 Ti~~GT~~g~g~T~IGdnnl~May~------------HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvr  162 (260)
T COG1043          95 TIHRGTVQGGGVTRIGDNNLIMAYA------------HVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVR  162 (260)
T ss_pred             EEeccccCCceeEEECCCCEEEEee------------eeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEE
Confidence            55544432  223444444444331            223445555555555555553 477888888888888888888


Q ss_pred             ECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          202 VETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       202 Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                      ||++|+||..|.|.  .+|||++++.|+|++..
T Consensus       163 IG~~amiGg~S~v~--~DVpPy~~~~Gn~a~l~  193 (260)
T COG1043         163 IGAHAMIGGLSAVS--QDVPPYVIASGNHARLR  193 (260)
T ss_pred             Ecchheeccccccc--cCCCCeEEecCCccccc
Confidence            99999999999999  99999999999999864

>PRK10502 putative acyl transferase; Provisional

Probab=99.82  E-value=8.7e-20  Score=154.40  Aligned_cols=130  Identities=18%  Similarity=0.250  Sum_probs=108.6

Q ss_pred             CCCCceeCCCcEEcCCcEEec--ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecc
Q 039842           69 GQWVPKVAVDAYVAPNVVLAG--QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDL  146 (284)
Q Consensus        69 ~~~~~~i~~~~~I~~~a~i~~--~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~  146 (284)
                      +.+...+++++.|++++.|..  ++.||+++.|++++.|. +...++||++|.|++++.|....+...+           
T Consensus        48 r~~ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~-~~~~v~IG~~~~I~~~~~I~~~~h~~~~-----------  115 (182)
T PRK10502         48 RLFGAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLY-NLGEITIGAHCVISQKSYLCTGSHDYSD-----------  115 (182)
T ss_pred             HHhccccCCCcEEcCCEEEecCCeEEECCCeEECCCceec-ccCceEECCCcEECCCeEEECCCCCCcC-----------
Confidence            344568999999999999854  79999999999999996 4567999999999999999876552211           


Q ss_pred             cccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842          147 QMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW  226 (284)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv  226 (284)
                                           ..     ......+++|||+||||++|+|.+|++||++++|+++++|.  +++|+++++
T Consensus       116 ---------------------~~-----~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~--~~v~~~~v~  167 (182)
T PRK10502        116 ---------------------PH-----FDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVF--KSLPANTIC  167 (182)
T ss_pred             ---------------------CC-----cccccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEe--cccCCCcEE
Confidence                                 00     01123567999999999999999999999999999999999  899999999


Q ss_pred             eccCceeeccCC
Q 039842          227 AGNPARFVRTLT  238 (284)
Q Consensus       227 ~G~pa~~~~~~~  238 (284)
                      +|+||++++++.
T Consensus       168 ~G~Pa~~ik~r~  179 (182)
T PRK10502        168 RGNPAVPIRPRV  179 (182)
T ss_pred             ECCcceEecccc
Confidence            999999988753

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.82  E-value=4.1e-19  Score=152.73  Aligned_cols=161  Identities=17%  Similarity=0.157  Sum_probs=110.0

Q ss_pred             CCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCC--------------ccc
Q 039842           71 WVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSP--------------YRF  136 (284)
Q Consensus        71 ~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~--------------~~~  136 (284)
                      ....++++++|++++.|.++++||+++.|++++.|..+   ++||++|.|+++++|+......              ...
T Consensus        18 ~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~   94 (205)
T cd03352          18 EGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEG---CIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVI   94 (205)
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC---CEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcceEE
Confidence            34568888888888888889999999999999998755   7899999999999886432110              111


Q ss_pred             ccceeeeecccccC----------CCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCC
Q 039842          137 VGFVSLLIDLQMSC----------PRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETH  205 (284)
Q Consensus       137 ~g~~~~~~~~~~~~----------~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~  205 (284)
                      +|....+.......          .............+++||+++.|+.++.+ ++++||++|+||++++|.++++||++
T Consensus        95 Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig~~  174 (205)
T cd03352          95 IGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDG  174 (205)
T ss_pred             ECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEECCC
Confidence            12221111110000          00000000111123344444444444444 57999999999999999999999999


Q ss_pred             CEEcCCCeeCCCCeeCCCCEEeccCceeecc
Q 039842          206 AILEAGSVLPPGRRIPTGELWAGNPARFVRT  236 (284)
Q Consensus       206 ~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~  236 (284)
                      ++|+++++|.  .++|++.++.|+||+++++
T Consensus       175 ~~i~~~s~v~--~~~~~~~~~~G~pa~~~~~  203 (205)
T cd03352         175 VVIGAGSGVT--SIVPPGEYVSGTPAQPHRE  203 (205)
T ss_pred             CEEcCCCEEe--eECCCCCEEEeecCchhhh
Confidence            9999999999  8999999999999997665

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.82  E-value=2.5e-19  Score=154.09  Aligned_cols=139  Identities=17%  Similarity=0.206  Sum_probs=88.5

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS  153 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (284)
                      .+++++.|++++.|. ++.||++++|++++.|. +   +.||++|.|++++.|....+.... ..               
T Consensus        21 ~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~-~---~~IG~~~~I~~~v~I~~~~h~~~~-~s---------------   79 (204)
T TIGR03308        21 KLGRYTEIGERTRLR-EVALGDYSYVMRDCDII-Y---TTIGKFCSIAAMVRINATNHPMER-PT---------------   79 (204)
T ss_pred             EeCCCcEECCCcEEe-CCEECCCCEECCCcEEe-e---eEECCCCEECCCCEECCCCCCCCc-cc---------------
Confidence            455666666666654 55666666666666664 3   567777777777776554331110 00               


Q ss_pred             CccccccCCcceEEC----CCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEecc
Q 039842          154 NSLYIAWLPAETSIE----RFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGN  229 (284)
Q Consensus       154 ~~~~~~~~~~~v~Ig----~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~  229 (284)
                       ..++.+..  ....    ++...-..-...+++||++|+||.+++|.++++||++++|+++++|.  .+||++++++|+
T Consensus        80 -~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~--~~i~~~~~~~G~  154 (204)
T TIGR03308        80 -LHHFTYRA--AMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVT--KDVAPYTIVAGV  154 (204)
T ss_pred             -cccccccc--ccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEC--CCCCCCcEEEec
Confidence             00000000  0000    00000001122578999999999999999999999999999999999  789999999999


Q ss_pred             CceeeccCC
Q 039842          230 PARFVRTLT  238 (284)
Q Consensus       230 pa~~~~~~~  238 (284)
                      |++.++.+.
T Consensus       155 Pa~~~~~~~  163 (204)
T TIGR03308       155 PAKLIRRRF  163 (204)
T ss_pred             CchHhhhcC
Confidence            999987643

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.81  E-value=9e-19  Score=162.17  Aligned_cols=116  Identities=9%  Similarity=0.077  Sum_probs=84.6

Q ss_pred             ceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHHHH
Q 039842          164 ETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEET  242 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~~~  242 (284)
                      +++||++|.|+.+++| ++++||++|+|++++.|..+++||++|+|+.++.|.++..|++++++++. +.+.+++++...
T Consensus       225 ~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~-s~v~~~i~~~~~  303 (343)
T PRK00892        225 DTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAM-SGVTKSIPEPGE  303 (343)
T ss_pred             cceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecC-CeeCCccCCCCe
Confidence            4677777777777777 67999999999999999999999999999999999999999999998877 666777776322


Q ss_pred             hhhhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Q 039842          243 LEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLG  281 (284)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (284)
                      .+....+...++..+ ....++.+.+++.++++++|++.
T Consensus       304 ~~~G~pa~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~  341 (343)
T PRK00892        304 YSSGIPAQPNKEWLR-TAARLRRLDELRKRLKALEKKVE  341 (343)
T ss_pred             EEEeecCchHHHHHH-HHHHHhhhHHHHHHHHHHHHHhh
Confidence            222222222222222 22345667777777777777653

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.80  E-value=9.9e-19  Score=147.81  Aligned_cols=123  Identities=17%  Similarity=0.282  Sum_probs=102.0

Q ss_pred             CCcEEcCCcE--EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           77 VDAYVAPNVV--LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        77 ~~~~I~~~a~--i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      ++++|.|++.  ++.++.||++++|+.+++|. +.+.++||++|.|+++|.|.+..|....                   
T Consensus        58 ~~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~-d~~~I~IGd~v~I~~~v~i~t~~h~~~~-------------------  117 (183)
T PRK10092         58 TEAYIEPTFRCDYGYNIFLGNNFYANFDCVML-DVCPIRIGDNCMLAPGVHIYTATHPLDP-------------------  117 (183)
T ss_pred             CCEEEeCCEEEeecCCcEEcCCcEECCceEEe-cCceEEECCCCEECCCCEEEcCCCCCCh-------------------
Confidence            4688888885  47899999999999999995 7788999999999999999876552211                   


Q ss_pred             ccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                                .....+..+     -++++|||+||||++++|.++++||++|+|+++++|.  ++||++++++|+||+++
T Consensus       118 ----------~~~~~~~~~-----~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~--~di~~~~i~~G~PAr~i  180 (183)
T PRK10092        118 ----------VARNSGAEL-----GKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVT--KDVPDNVVVGGNPARII  180 (183)
T ss_pred             ----------HHcccccee-----cCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEc--cccCCCcEEEecCcEEe
Confidence                      111111111     1567999999999999999999999999999999999  78999999999999998


Q ss_pred             cc
Q 039842          235 RT  236 (284)
Q Consensus       235 ~~  236 (284)
                      +.
T Consensus       181 ~~  182 (183)
T PRK10092        181 KK  182 (183)
T ss_pred             ec
Confidence            75

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.80  E-value=1.6e-18  Score=147.91  Aligned_cols=140  Identities=17%  Similarity=0.250  Sum_probs=108.0

Q ss_pred             CceeCCCcEEcCCcEE----ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccc
Q 039842           72 VPKVAVDAYVAPNVVL----AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ  147 (284)
Q Consensus        72 ~~~i~~~~~I~~~a~i----~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~  147 (284)
                      .-.+++++++..++++    .+.+.||+++.|++++.|. ....++||++|.|+++|.|....+....            
T Consensus        43 ~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~-~~~~v~IG~~v~Ig~~v~I~~~~hg~~~------------  109 (192)
T PRK09677         43 SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIA-CIESITIGRDTLIASKVFITDHNHGSFK------------  109 (192)
T ss_pred             eEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEc-cCceEEECCCCEECCCeEEECCCCcccc------------
Confidence            3467888889998887    4588999999999999985 4456999999999999999765442111            


Q ss_pred             ccCCCCCccccccCCcceEECCCCEEC---CCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCC
Q 039842          148 MSCPRSNSLYIAWLPAETSIERFVTIG---AYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGE  224 (284)
Q Consensus       148 ~~~~~~~~~~~~~~~~~v~Ig~~v~Ig---~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~  224 (284)
                                      ......+..+.   ......+++|||+|+||.+++|.++++||++|+|+++++|.  .++|+++
T Consensus       110 ----------------~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~--~~i~~~~  171 (192)
T PRK09677        110 ----------------HSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVT--KSIPENT  171 (192)
T ss_pred             ----------------ccccccccccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEEC--cccCCCc
Confidence                            00000111111   11234678999999999999999999999999999999999  6899999


Q ss_pred             EEeccCceeeccCCHHHH
Q 039842          225 LWAGNPARFVRTLTHEET  242 (284)
Q Consensus       225 vv~G~pa~~~~~~~~~~~  242 (284)
                      +++|+||++++++..+..
T Consensus       172 ~~~G~Pa~~ik~~~~~~~  189 (192)
T PRK09677        172 VIAGNPAKIIKKYNHETK  189 (192)
T ss_pred             EEEecCCEEEeccCcccc
Confidence            999999999999877543

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.79  E-value=1.6e-18  Score=155.66  Aligned_cols=136  Identities=15%  Similarity=0.176  Sum_probs=74.3

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcc-cccceeeeecccccCC
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYR-FVGFVSLLIDLQMSCP  151 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~-~~g~~~~~~~~~~~~~  151 (284)
                      ..|++++.|++++.|++++.||++|+|++++.|+.+   +.||++|.|+++++|+.+...... ..|             
T Consensus       130 v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~---~~IG~~v~I~~GavIG~dgFg~a~~~~g-------------  193 (338)
T COG1044         130 VVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHN---VVIGNNVIIHSGAVIGADGFGYAGTAIG-------------  193 (338)
T ss_pred             CEECCCcEECCCCEECCCcEECCCcEEcCCCEEecC---cEECCceEECCCCEEccCccccccccCC-------------
Confidence            345555555555555556666666666666666533   667777777777777655432111 111             


Q ss_pred             CCCccccccCCcceEECCCCEECCCceee-----------------------ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          152 RSNSLYIAWLPAETSIERFVTIGAYCSLR-----------------------SCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       152 ~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~-----------------------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                          .+...+.++++||++|.||+|++|.                       +|+||++|.|.+++.|.+.+.||++|+|
T Consensus       194 ----~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~i  269 (338)
T COG1044         194 ----WVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVII  269 (338)
T ss_pred             ----ceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEE
Confidence                1222344568888888888888872                       2333333333333344444555555555


Q ss_pred             cCCCeeCCCCeeCCCCEEec
Q 039842          209 EAGSVLPPGRRIPTGELWAG  228 (284)
Q Consensus       209 ~a~s~V~~~~~I~~~~vv~G  228 (284)
                      +..+.|..+..|.+++.+.+
T Consensus       270 gg~vgI~gh~~IgD~~~I~~  289 (338)
T COG1044         270 GGQVGIAGHLEIGDGVTIGA  289 (338)
T ss_pred             CcceeecCceEEcCCCEEec
Confidence            55555555555555555443

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.78  E-value=5.6e-18  Score=132.97  Aligned_cols=118  Identities=19%  Similarity=0.321  Sum_probs=100.4

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      +++++.|++++.|.+++.||++|.|++++.|..+   ++||++|.|++++.+.....                       
T Consensus         1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~-----------------------   54 (119)
T cd03358           1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEG---VTIEDDVFIGPNVVFTNDLY-----------------------   54 (119)
T ss_pred             CCCCCEECCCcEECCCcEECCCcEECCCcEEeCC---eEECCCcEEcCCeEEecCCC-----------------------
Confidence            4678899999999999999999999999999544   88999999999998854211                       


Q ss_pred             ccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                                    .+..+..++.+.+++||++|+||.++.+.+++.|++++.|++++.+.  .++|+++++.|+||+++
T Consensus        55 --------------~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v~--~~i~~~~~~~G~pa~~~  118 (119)
T cd03358          55 --------------PRSKIYRKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVT--KDVPPYALVVGNPARII  118 (119)
T ss_pred             --------------CccccccccccCCcEECCCcEECcCCEEeCCcEECCCCEEccCCEEe--CcCCCCeEEecCcceec
Confidence                          12222336678999999999999999999999999999999999999  67999999999999875

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.77  E-value=1.4e-17  Score=148.15  Aligned_cols=158  Identities=15%  Similarity=0.149  Sum_probs=123.5

Q ss_pred             CCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCC-------Ccccccceeee
Q 039842           71 WVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS-------PYRFVGFVSLL  143 (284)
Q Consensus        71 ~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~g~~~~~  143 (284)
                      +...+++++.|+|++.|.+++.||+++.|++++.|.++   ++||++|.|+++++|+.....       ....+|.++.+
T Consensus         9 ~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~---v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I   85 (254)
T TIGR01852         9 PGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGH---TTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTI   85 (254)
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeee---EEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEE
Confidence            34578889999999999999999999999999999766   999999999999999754221       12345555555


Q ss_pred             ecccccCCCCCccccccCC-cceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842          144 IDLQMSCPRSNSLYIAWLP-AETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP  221 (284)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~-~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~  221 (284)
                      .+......-.      ... .+++||+++.|++++.| ++++||++|+|+.++.|.++++||++|+|++++.|.++..|+
T Consensus        86 ~~~~~I~~~~------~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig  159 (254)
T TIGR01852        86 REFVTINRGT------ASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIG  159 (254)
T ss_pred             CCCCEECCcc------cCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEEC
Confidence            4432211110      011 36899999999999999 789999999999999999999999999999999999999999


Q ss_pred             CCCEEeccCceeeccCC
Q 039842          222 TGELWAGNPARFVRTLT  238 (284)
Q Consensus       222 ~~~vv~G~pa~~~~~~~  238 (284)
                      +++++.+. +.+.+.++
T Consensus       160 ~~~~Ig~~-s~V~~~i~  175 (254)
T TIGR01852       160 RYAMIGGL-SAVSKDVP  175 (254)
T ss_pred             CCCEEeee-eeEeeecC
Confidence            99987654 44444444

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.77  E-value=5.6e-18  Score=141.69  Aligned_cols=127  Identities=21%  Similarity=0.285  Sum_probs=103.0

Q ss_pred             CCceeCCCcEEcCCcEE--ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc
Q 039842           71 WVPKVAVDAYVAPNVVL--AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM  148 (284)
Q Consensus        71 ~~~~i~~~~~I~~~a~i--~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~  148 (284)
                      .+..++++++|.+++.+  +.++.||++++|++++.|. +...++||++|.|+++|.|.+..+....             
T Consensus        41 ~~~~~~~~~~i~~~~~~~~~~~i~IG~~v~I~~~~~i~-~~~~i~IG~~v~Ig~~~~I~~~~h~~~~-------------  106 (169)
T cd03357          41 LFGSVGENVYIEPPFHCDYGYNIHIGDNFYANFNCTIL-DVAPVTIGDNVLIGPNVQIYTAGHPLDP-------------  106 (169)
T ss_pred             HhcccCCCCEEcCCEEEEeCCcCEECCCceEcCCEEEe-ccCcEEECCCCEECCCCEEEeCCCCCCh-------------
Confidence            44567888999988775  5689999999999999996 5567999999999999999876542111             


Q ss_pred             cCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEec
Q 039842          149 SCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAG  228 (284)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G  228 (284)
                                      .....+.     ...++++|||+||||.+++|.++++||++|+|+++++|.  .+||++++++|
T Consensus       107 ----------------~~~~~~~-----~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~--~~vp~~~vv~G  163 (169)
T cd03357         107 ----------------EERNRGL-----EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVT--KDIPANVVAAG  163 (169)
T ss_pred             ----------------hHccccc-----eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEc--cccCCCcEEEc
Confidence                            0000111     123578999999999999999999999999999999999  68999999999


Q ss_pred             cCceee
Q 039842          229 NPARFV  234 (284)
Q Consensus       229 ~pa~~~  234 (284)
                      +||+++
T Consensus       164 ~PAkvi  169 (169)
T cd03357         164 NPARVI  169 (169)
T ss_pred             cccEEC
Confidence            999864

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=99.76  E-value=4.1e-18  Score=134.19  Aligned_cols=163  Identities=23%  Similarity=0.348  Sum_probs=134.7

Q ss_pred             eCCCcEEcCCcEEec--ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842           75 VAVDAYVAPNVVLAG--QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR  152 (284)
Q Consensus        75 i~~~~~I~~~a~i~~--~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (284)
                      -+.+..+.....+-+  |+.+...+.|.+++.|+||...+.+|.+|+++.+++|.+.-.                     
T Consensus        16 TasGNKVsr~~vlcGsQNI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K---------------------   74 (184)
T KOG3121|consen   16 TASGNKVSRKHVLCGSQNILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMK---------------------   74 (184)
T ss_pred             hccCCcccceeEeeccceEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchH---------------------
Confidence            344455555555533  788888999999999999999999999999999999975422                     


Q ss_pred             CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCce
Q 039842          153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR  232 (284)
Q Consensus       153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~  232 (284)
                      .++....++  ++.||++|+|++.|++...+||.++.+|.+++|+.+|++.|.|.|-+++++++.+.+|+++.+.|+|+.
T Consensus        75 ~FSKg~aff--p~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~p~~  152 (184)
T KOG3121|consen   75 IFSKGPAFF--PVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGNPAQ  152 (184)
T ss_pred             HhcCCceee--eeeecceEEEecceEeehhhheeeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEcCCCce
Confidence            233333444  489999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCHHHHhhhhhhHHHHHHHHHHHHhccccch
Q 039842          233 FVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYS  267 (284)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (284)
                      +....+.-.+       ....+..+.|+++|.+..
T Consensus       153 ~~G~~P~ctq-------~lMi~~tksyY~~Fvp~~  180 (184)
T KOG3121|consen  153 VVGTEPRCTQ-------NLMIEATKSYYDNFVPKQ  180 (184)
T ss_pred             eeccCchhhH-------HHHHHHHHHHHHhcCccc
Confidence            9887766443       344566777888876643

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.75  E-value=2e-17  Score=146.81  Aligned_cols=159  Identities=18%  Similarity=0.193  Sum_probs=121.2

Q ss_pred             CCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCC-------cccccceeee
Q 039842           71 WVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSP-------YRFVGFVSLL  143 (284)
Q Consensus        71 ~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~-------~~~~g~~~~~  143 (284)
                      +.+.+++++.|+|++.|+++++||++|.|+++++|.++   +.||++|.|+++++|+...++.       ...+|.++.+
T Consensus        10 ~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I   86 (255)
T PRK12461         10 PSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGP---TRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVI   86 (255)
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCC---CEECCCCEEccCcEeCCCCccccccCccceeEECCceEE
Confidence            44568888899999999999999999999999999866   9999999999999998644321       2235555555


Q ss_pred             ecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCC
Q 039842          144 IDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPT  222 (284)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~  222 (284)
                      .+......-      ++....++||+++.|.+++.| ++|.||++|+|+.++.+..+++||++++|++++.|.+++.|++
T Consensus        87 ~e~vtI~~g------t~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~  160 (255)
T PRK12461         87 REGVTIHRG------TKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGA  160 (255)
T ss_pred             CCccEEecC------cccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECC
Confidence            443221110      012234777777777777777 6789999999999999999999999999999999999999999


Q ss_pred             CCEEeccCceeeccCCH
Q 039842          223 GELWAGNPARFVRTLTH  239 (284)
Q Consensus       223 ~~vv~G~pa~~~~~~~~  239 (284)
                      ++++.+. +.+.+++++
T Consensus       161 ~a~Vg~g-s~V~~dVpp  176 (255)
T PRK12461        161 LAMMAGG-SRISKDVPP  176 (255)
T ss_pred             CcEECCC-ceEeccCCC
Confidence            9997654 556565553

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.75  E-value=1.8e-17  Score=141.70  Aligned_cols=160  Identities=16%  Similarity=0.152  Sum_probs=85.5

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCC----------CcEEECCCCEECCCCEEecCCCCCc-------c
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDL----------NKITVGFCSNVQERCVLHAAWNSPY-------R  135 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~----------~~v~IG~~~~I~~~~~I~~~~~~~~-------~  135 (284)
                      ..|+|++.|.|+++|+++|.||+.|+|++++.|. +.          +..+||+++.|.+.+.|+...++-.       -
T Consensus         4 ~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig-~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l   82 (260)
T COG1043           4 AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIG-DGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRL   82 (260)
T ss_pred             cccCcceeeCCCCCcCCCCEECceEEECCCcEEC-CCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEE
Confidence            4688888888888888888888888888888874 32          1234455555555555544333211       0


Q ss_pred             cccceeeeecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCee
Q 039842          136 FVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVL  214 (284)
Q Consensus       136 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V  214 (284)
                      .+|.++.+.++...+.....+     ..-+.||+++++-+++.| |+|+||++|++..++++..+|.|||.++|+..+.|
T Consensus        83 ~IG~~n~IRE~vTi~~GT~~g-----~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saV  157 (260)
T COG1043          83 IIGDNNTIREFVTIHRGTVQG-----GGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAV  157 (260)
T ss_pred             EECCCCeEeeEEEEeccccCC-----ceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceE
Confidence            223333332222111110000     012344444444444444 45666666666666666666666666666666666


Q ss_pred             CCCCeeCCCCEEeccCceeeccCCH
Q 039842          215 PPGRRIPTGELWAGNPARFVRTLTH  239 (284)
Q Consensus       215 ~~~~~I~~~~vv~G~pa~~~~~~~~  239 (284)
                      -+.+.|++++++.|- +.+.+++++
T Consensus       158 HQFvrIG~~amiGg~-S~v~~DVpP  181 (260)
T COG1043         158 HQFVRIGAHAMIGGL-SAVSQDVPP  181 (260)
T ss_pred             EEEEEEcchheeccc-cccccCCCC
Confidence            666666666665544 334455544

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.75  E-value=5.3e-17  Score=138.40  Aligned_cols=150  Identities=23%  Similarity=0.333  Sum_probs=97.9

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeee--------
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLI--------  144 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~--------  144 (284)
                      ..++++++|+|++.|.+++.||++|+|++++.|. +   ..||++|.|++++.|....-.....+|..+.+.        
T Consensus        16 v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~-~---~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~   91 (193)
T cd03353          16 VEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIK-D---STIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG   91 (193)
T ss_pred             eEECCCcEECCCCEEeCcCEECCCCEECCCcEEe-C---CEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC
Confidence            4577777777777777777777777777777775 2   255555555554444321111111111111111        


Q ss_pred             ----------cccccCCCCCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCC
Q 039842          145 ----------DLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHA  206 (284)
Q Consensus       145 ----------~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~  206 (284)
                                +... .+.......+.. .++.||+++.||+++.+.        +++|||+||||.+++|.++++||+++
T Consensus        92 ~~Ig~~~~i~~s~i-g~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~  169 (193)
T cd03353          92 VHIGNFVEIKKSTI-GEGSKANHLSYL-GDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGA  169 (193)
T ss_pred             CEECCcEEEecceE-cCCCEeccccee-cccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCc
Confidence                      0000 000000011112 357888888888888773        68999999999999999999999999


Q ss_pred             EEcCCCeeCCCCeeCCCCEEeccC
Q 039842          207 ILEAGSVLPPGRRIPTGELWAGNP  230 (284)
Q Consensus       207 ~I~a~s~V~~~~~I~~~~vv~G~p  230 (284)
                      +|+++++|.  +++|+++++.|.|
T Consensus       170 ~i~~gs~V~--~~v~~~~~v~~~~  191 (193)
T cd03353         170 TIAAGSTIT--KDVPPGALAIARA  191 (193)
T ss_pred             EECCCCEEc--cccCCCCEEEecc
Confidence            999999999  8999999999875

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.75  E-value=4.1e-17  Score=155.91  Aligned_cols=156  Identities=23%  Similarity=0.282  Sum_probs=111.3

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC-
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR-  152 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~-  152 (284)
                      .+++++.|++++.|.++++||++|.|++++.|. +   +.||++|.|++++.|....-.....+|.++.+.......++ 
T Consensus       263 ~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~---~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~  338 (451)
T TIGR01173       263 EIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIK-N---SVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGV  338 (451)
T ss_pred             EECCCCEEcCCeEEeCceEECCCCEECCCcEEe-e---eEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCc
Confidence            467888999999998899999999999999885 4   67777777777666654332222223322222211000000 


Q ss_pred             ----------------CCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          153 ----------------SNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       153 ----------------~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                                      .......+. .++.||++|.||.++.+.        +++|||+|+||.++.|.++++||++++|
T Consensus       339 ~Ig~~~~i~~~~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i  417 (451)
T TIGR01173       339 HIGNFVETKNARIGKGSKAGHLSYL-GDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATI  417 (451)
T ss_pred             EEccceeecCcEECCCcEecceeeE-eeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEE
Confidence                            000011112 247888888888888773        5899999999999999999999999999


Q ss_pred             cCCCeeCCCCeeCCCCEEeccCceeecc
Q 039842          209 EAGSVLPPGRRIPTGELWAGNPARFVRT  236 (284)
Q Consensus       209 ~a~s~V~~~~~I~~~~vv~G~pa~~~~~  236 (284)
                      +++++|.  .+||+++++.|.|+.+..+
T Consensus       418 ~~g~~v~--~~v~~~~~~~~~~~~~~~~  443 (451)
T TIGR01173       418 AAGSTVT--KDVPEGALAISRARQRNIE  443 (451)
T ss_pred             ccCCEEC--ccCCCCcEEEccCceeecc
Confidence            9999999  8999999999988876543

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.74  E-value=4.5e-17  Score=138.59  Aligned_cols=116  Identities=22%  Similarity=0.454  Sum_probs=102.9

Q ss_pred             CCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCc
Q 039842           76 AVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNS  155 (284)
Q Consensus        76 ~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (284)
                      ...+.+++.+.+.+++.||+++.|+++++|..+   ++||++|.|++++.|..                           
T Consensus        85 ~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~---------------------------  134 (201)
T TIGR03570        85 RFATLIHPSAIVSPSASIGEGTVIMAGAVINPD---VRIGDNVIINTGAIVEH---------------------------  134 (201)
T ss_pred             cceEEecCCeEECCCCEECCCCEECCCCEECCC---CEECCCcEECCCCEEcC---------------------------
Confidence            344677888888888889999999999988544   88999999999998842                           


Q ss_pred             cccccCCcceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCc
Q 039842          156 LYIAWLPAETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPA  231 (284)
Q Consensus       156 ~~~~~~~~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa  231 (284)
                              ++.||++++|+.++.+. .++||++|+||.++.+.+++.||++|+|+++++|.  .++|+++++.|+||
T Consensus       135 --------~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~--~~~~~~~~~~g~pa  201 (201)
T TIGR03570       135 --------DCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVT--KDIPDGGVVVGVPA  201 (201)
T ss_pred             --------CCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEC--CcCCCCCEEEeccC
Confidence                    37899999999999986 79999999999999999999999999999999998  78999999999997

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.74  E-value=5.8e-17  Score=131.24  Aligned_cols=124  Identities=17%  Similarity=0.219  Sum_probs=96.7

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR  152 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (284)
                      ..+++++.|.+.+.+..++.||+++.|++++.|..+   ++||++|.|++++.|+.....                    
T Consensus        14 ~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~~~igg~~~~--------------------   70 (139)
T cd03350          14 AFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSC---AQIGKNVHLSAGAVIGGVLEP--------------------   70 (139)
T ss_pred             CEECCCCEECCCCEEccCCEECCCeEEcCCCEECCC---CEECCCCEECCCCEECCcccc--------------------
Confidence            345666666666666667777777777777777433   778888888888887532110                    


Q ss_pred             CCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCC-CEEeccC
Q 039842          153 SNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTG-ELWAGNP  230 (284)
Q Consensus       153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~-~vv~G~p  230 (284)
                             ....+++|+++++|+++++| .+++||+++.|+++++|.++++|+++   +++++|.  +++|++ ++++|+|
T Consensus        71 -------~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~--~~~~~~~~~~~g~~  138 (139)
T cd03350          71 -------LQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYY--GRVPPGSVVVAGSL  138 (139)
T ss_pred             -------cccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEe--cccCCCCEEecccC
Confidence                   01235899999999999999 68999999999999999999999998   9999999  999999 8999987


Q ss_pred             c
Q 039842          231 A  231 (284)
Q Consensus       231 a  231 (284)
                      .
T Consensus       139 ~  139 (139)
T cd03350         139 P  139 (139)
T ss_pred             C
Confidence            3

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.74  E-value=5.5e-17  Score=125.55  Aligned_cols=106  Identities=21%  Similarity=0.252  Sum_probs=87.4

Q ss_pred             cceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEEC
Q 039842           89 GQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIE  168 (284)
Q Consensus        89 ~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig  168 (284)
                      .+++||+++.|++++.|. +...++||++|.|++++.|....+...                                ..
T Consensus         2 ~~i~iG~~~~I~~~~~i~-~~~~i~IG~~~~I~~~~~I~~~~h~~~--------------------------------~~   48 (107)
T cd05825           2 WNLTIGDNSWIGEGVWIY-NLAPVTIGSDACISQGAYLCTGSHDYR--------------------------------SP   48 (107)
T ss_pred             ceEEECCCCEECCCCEEe-eCCceEECCCCEECCCeEeecCCCCCC--------------------------------cC
Confidence            468899999999999996 455799999999999999976544211                                11


Q ss_pred             CCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          169 RFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       169 ~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                      +..     ....+++|||+||||.++.|.++++||++|+|+++++|.  .++|++++++|+||+++
T Consensus        49 ~~~-----~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~--~~~~~~~~~~G~Pa~~~  107 (107)
T cd05825          49 AFP-----LITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVV--RDLPAWTVYAGNPAVPV  107 (107)
T ss_pred             ccc-----eecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEe--CcCCCCCEEECCccEeC
Confidence            111     123678999999999999999999999999999999999  78999999999999864

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.73  E-value=6.9e-17  Score=142.51  Aligned_cols=114  Identities=20%  Similarity=0.346  Sum_probs=71.9

Q ss_pred             CcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccc
Q 039842           78 DAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLY  157 (284)
Q Consensus        78 ~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  157 (284)
                      ++.|.|++.+..++.||++++|.++ .+...   +.||++|.|..+++|+.                             
T Consensus       100 ~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vnig---a~IGeGt~I~~~a~IG~-----------------------------  146 (269)
T TIGR00965       100 GFRVVPGAAVRQGAFIAKNVVLMPS-YVNIG---AYVDEGTMVDTWATVGS-----------------------------  146 (269)
T ss_pred             CEEECCCcEECCCcEECCCCEEeee-EEcCC---cEECCCCEECCCcEECC-----------------------------
Confidence            4455555555555555555555543 22111   45666666666665542                             


Q ss_pred             cccCCcceEECCCCEECCCcee---------eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCC----------
Q 039842          158 IAWLPAETSIERFVTIGAYCSL---------RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGR----------  218 (284)
Q Consensus       158 ~~~~~~~v~Ig~~v~Ig~~~~I---------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~----------  218 (284)
                            +++||++|.|+.++.|         ++++|||+|+||++|.|.++++||++|+|+++++|++++          
T Consensus       147 ------~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v  220 (269)
T TIGR00965       147 ------CAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEI  220 (269)
T ss_pred             ------CCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCce
Confidence                  3667777777776666         456777777777777777777777777777777776543          


Q ss_pred             ---eeCCCCEEe-c-cC
Q 039842          219 ---RIPTGELWA-G-NP  230 (284)
Q Consensus       219 ---~I~~~~vv~-G-~p  230 (284)
                         .||+++++. | .|
T Consensus       221 ~~~~vp~~svv~~g~~p  237 (269)
T TIGR00965       221 HYGRVPAGSVVVSGNLP  237 (269)
T ss_pred             eeeecCCCcEEecCCee
Confidence               789999987 4 45

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.73  E-value=9.4e-17  Score=135.33  Aligned_cols=115  Identities=24%  Similarity=0.462  Sum_probs=102.1

Q ss_pred             CCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCc
Q 039842           76 AVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNS  155 (284)
Q Consensus        76 ~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (284)
                      .....+++.+.+.+++.||+++.|+++++|..+   ++||++|.|++++.|..                           
T Consensus        82 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~---------------------------  131 (197)
T cd03360          82 RFATLIHPSAVVSPSAVIGEGCVIMAGAVINPD---ARIGDNVIINTGAVIGH---------------------------  131 (197)
T ss_pred             ccceEECCCeEECCCCEECCCCEEcCCCEECCC---CEECCCeEECCCCEECC---------------------------
Confidence            344678888888888889999999999988544   88999999999998853                           


Q ss_pred             cccccCCcceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccC
Q 039842          156 LYIAWLPAETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNP  230 (284)
Q Consensus       156 ~~~~~~~~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~p  230 (284)
                              +++||++++|+.++.+. +++||++|+||.++.|.++++||++++|+++++|.  .++|+++++.|+|
T Consensus       132 --------~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~--~~~~~~~~~~g~p  197 (197)
T cd03360         132 --------DCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVT--KDVPDGSVVVGNP  197 (197)
T ss_pred             --------CCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEEc--CCCCCCCEEEecC
Confidence                    37899999999999995 59999999999999999999999999999999999  6899999999998

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.73  E-value=1e-16  Score=129.85  Aligned_cols=119  Identities=20%  Similarity=0.227  Sum_probs=98.4

Q ss_pred             EEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccc
Q 039842           80 YVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIA  159 (284)
Q Consensus        80 ~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  159 (284)
                      .|+|++.|++++.|++++.|.+++.|..+   +.||++|.|+.++.|+.                               
T Consensus         3 ~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~---~~IG~~~~I~~~~~I~~-------------------------------   48 (139)
T cd03350           3 RVPPGAIIRDGAFIGPGAVLMMPSYVNIG---AYVDEGTMVDSWATVGS-------------------------------   48 (139)
T ss_pred             ccCCCcEECCCCEECCCCEECCCCEEccC---CEECCCeEEcCCCEECC-------------------------------
Confidence            56677777777777777777777777433   67888888888887742                               


Q ss_pred             cCCcceEECCCCEECCCceee---------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccC
Q 039842          160 WLPAETSIERFVTIGAYCSLR---------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNP  230 (284)
Q Consensus       160 ~~~~~v~Ig~~v~Ig~~~~I~---------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~p  230 (284)
                          +++||++|.|+.++.+.         +++||++|+||++++|.++++||++++|+++++|.++..|.++    |.-
T Consensus        49 ----~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~----~~~  120 (139)
T cd03350          49 ----CAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR----ETG  120 (139)
T ss_pred             ----CCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc----Ccc
Confidence                37888888888888884         5899999999999999999999999999999999999999887    777


Q ss_pred             ceeeccCCHH
Q 039842          231 ARFVRTLTHE  240 (284)
Q Consensus       231 a~~~~~~~~~  240 (284)
                      +.++++.++.
T Consensus       121 ~~v~~~~~~~  130 (139)
T cd03350         121 EIYYGRVPPG  130 (139)
T ss_pred             cEEecccCCC
Confidence            8888877764

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.72  E-value=1.4e-16  Score=152.86  Aligned_cols=156  Identities=21%  Similarity=0.255  Sum_probs=108.2

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc-----
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM-----  148 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~-----  148 (284)
                      .+++++.|++++.|.++++||+++.|+++|.|. +   ++||++|.|++++.|....-.....+|.++.+.....     
T Consensus       267 ~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~---~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~  342 (456)
T PRK09451        267 THGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLK-N---CVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGA  342 (456)
T ss_pred             EECCCCEEcCCeEEecCcEECCCCEECCCceEe-c---CEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCc
Confidence            367788888888888888888888888888884 3   5666666666666554322222222222222221000     


Q ss_pred             ------------cCCCCCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          149 ------------SCPRSNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       149 ------------~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                                  .........+.+. +++.||++|.||+++++.        +++|||+|+||.+|.|.++++||++++|
T Consensus       343 ~ig~~~~i~~~~i~~~~~~~~~~~~-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i  421 (456)
T PRK09451        343 HVGNFVEMKKARLGKGSKAGHLTYL-GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATI  421 (456)
T ss_pred             eeccceeeeceeeCCCCccCccccc-cccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEE
Confidence                        0000011112222 468999999999998773        5899999999999999999999999999


Q ss_pred             cCCCeeCCCCeeCCCCEEe-ccCceeecc
Q 039842          209 EAGSVLPPGRRIPTGELWA-GNPARFVRT  236 (284)
Q Consensus       209 ~a~s~V~~~~~I~~~~vv~-G~pa~~~~~  236 (284)
                      +++++|.  ++||+++++. |.|++.+.+
T Consensus       422 ~~gs~v~--~~v~~~~~~~~~~~~~~~~~  448 (456)
T PRK09451        422 GAGTTVT--RDVAENELVISRVPQRHIQG  448 (456)
T ss_pred             CCCCEEc--cccCCCCEEEeccCceeccc
Confidence            9999999  8999999985 578887655

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.71  E-value=1.7e-17  Score=131.65  Aligned_cols=165  Identities=17%  Similarity=0.143  Sum_probs=137.0

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR  152 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (284)
                      .+|.+++.+...+.|.++++|+++|+|+|.+++..+.++++||+|++|.+.++|...-.....            +    
T Consensus         9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~------------~----   72 (190)
T KOG4042|consen    9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAV------------W----   72 (190)
T ss_pred             eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCc------------c----
Confidence            467777888877888999999999999999999999999999999999999998653221100            0    


Q ss_pred             CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCce
Q 039842          153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR  232 (284)
Q Consensus       153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~  232 (284)
                            ..-..+.+||.+....-+|......+||+.+|+..+.+++||.+.++|.||+.+.|.....+|+++++.|....
T Consensus        73 ------d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~L  146 (190)
T KOG4042|consen   73 ------DSDGQPMIIGTWNVFEVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNL  146 (190)
T ss_pred             ------CCCCCeEEEeccceEEeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEEccccc
Confidence                  00113689999999999999999999999999999999999999999999999999999999999999998665


Q ss_pred             eeccCC-----HHHHhhhhhhHHHHHHHHHHH
Q 039842          233 FVRTLT-----HEETLEIPKLAVAINDLSKSH  259 (284)
Q Consensus       233 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  259 (284)
                      .....+     ..+++|+++..+.|.+|.+..
T Consensus       147 ~R~~~~~~~~qtlQidFLrKiLPnYHHL~k~~  178 (190)
T KOG4042|consen  147 SRTTKTPNMTQTLQIDFLRKILPNYHHLYKKK  178 (190)
T ss_pred             cceecCCCCCccchHHHHHHHccchhhhhccc
Confidence            443222     237899999999998887653

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=99.71  E-value=1.2e-16  Score=135.63  Aligned_cols=130  Identities=24%  Similarity=0.278  Sum_probs=102.5

Q ss_pred             CCCcEEcCCcEE--e-cceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842           76 AVDAYVAPNVVL--A-GQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR  152 (284)
Q Consensus        76 ~~~~~I~~~a~i--~-~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (284)
                      ...+.+.+....  + .++.+|+++.++.++.+. ....++||+++.++++|.|.+..|....                 
T Consensus        50 ~~~~~i~~~~~~~~~~~~~~iG~~~~i~~~~~~~-~~~~i~ig~~~~i~~~v~i~~~~h~~~~-----------------  111 (190)
T COG0110          50 GEVAVIRPPVRIDLGEKNLTIGDLCFIGVNVVIL-VGEGITIGDNVVVGPNVTIYTNSHPGDF-----------------  111 (190)
T ss_pred             CCccEECCCEEEecCCcceEECCeeEEcCCcEEE-ecCCeEECCCceECCCcEEecCCCCCCh-----------------
Confidence            344566666555  4 688999999999999975 5667999999999999999876552111                 


Q ss_pred             CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCce
Q 039842          153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR  232 (284)
Q Consensus       153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~  232 (284)
                                      .....+......+++||++||||++++|++|++||++++|+++++|.  +++|++++++|+||+
T Consensus       112 ----------------~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVt--kdvp~~~iv~G~Pa~  173 (190)
T COG0110         112 ----------------VTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVT--KDVPPYGIVAGNPAR  173 (190)
T ss_pred             ----------------hhcccCCceecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEe--CccCCCeEEeCCcce
Confidence                            00000112334578999999999999999999999999999999999  899999999999999


Q ss_pred             eeccCCHHH
Q 039842          233 FVRTLTHEE  241 (284)
Q Consensus       233 ~~~~~~~~~  241 (284)
                      +++++...+
T Consensus       174 vir~~~~~~  182 (190)
T COG0110         174 VIRKRDVVA  182 (190)
T ss_pred             EEEecchhh
Confidence            988766543

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.71  E-value=2.1e-16  Score=140.56  Aligned_cols=128  Identities=24%  Similarity=0.351  Sum_probs=86.7

Q ss_pred             EEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccc
Q 039842           80 YVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIA  159 (284)
Q Consensus        80 ~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  159 (284)
                      ++.+++++.+++.|+++++|+++++|. .   ..|+.++.|+++|.|+....                            
T Consensus        99 ~~~~~~rI~p~a~V~~ga~Ig~gavI~-p---~~V~iGa~Ig~gt~I~~~a~----------------------------  146 (272)
T PRK11830         99 FKEAGVRVVPGAVVRRGAYIAPNVVLM-P---SYVNIGAYVDEGTMVDTWAT----------------------------  146 (272)
T ss_pred             hccCCcEEcCCeEECCCCEECCCcEEE-E---EEECCCCEECCCcEEccccE----------------------------
Confidence            677777787788888888888888876 2   44555555666665543322                            


Q ss_pred             cCCcceEECCCCEECCCceee---------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCC------------
Q 039842          160 WLPAETSIERFVTIGAYCSLR---------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGR------------  218 (284)
Q Consensus       160 ~~~~~v~Ig~~v~Ig~~~~I~---------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~------------  218 (284)
                       ...+++||++|.|++++.|+         +++|||+|+||++|+|.++++||++|+|+++++|.+++            
T Consensus       147 -IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~  225 (272)
T PRK11830        147 -VGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHY  225 (272)
T ss_pred             -ECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEe
Confidence             11235677777777776664         36777777777777777777777777777777776533            


Q ss_pred             -eeCCCCEEe-c-----------cCceeeccCCHH
Q 039842          219 -RIPTGELWA-G-----------NPARFVRTLTHE  240 (284)
Q Consensus       219 -~I~~~~vv~-G-----------~pa~~~~~~~~~  240 (284)
                       .||+++++. |           .||++++.++++
T Consensus       226 g~vp~~svvv~g~~~~~~~~~~~~~~~i~~~~~~~  260 (272)
T PRK11830        226 GRVPAGSVVVPGSLPSKDGGYSLYCAVIVKKVDAK  260 (272)
T ss_pred             eecCCCcEEecCcccccCCCcCCcCcEEEEEcccc
Confidence             577788876 6           378888777554

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.71  E-value=8.2e-17  Score=143.16  Aligned_cols=117  Identities=21%  Similarity=0.246  Sum_probs=89.6

Q ss_pred             EcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccccc
Q 039842           81 VAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAW  160 (284)
Q Consensus        81 I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  160 (284)
                      +...+.+..++.|++++.|++++.|. ....++||++|.||++|.|..                                
T Consensus       132 ~~~~~~~~~gidI~~~a~IG~g~~I~-h~~givIG~~a~IGdnv~I~~--------------------------------  178 (273)
T PRK11132        132 LQNQISVAFQVDIHPAAKIGRGIMLD-HATGIVIGETAVIENDVSILQ--------------------------------  178 (273)
T ss_pred             hhhcceeeeeeEecCcceECCCeEEc-CCCCeEECCCCEECCCCEEcC--------------------------------
Confidence            34445556677777777777777774 444588888888888877742                                


Q ss_pred             CCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCC
Q 039842          161 LPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLT  238 (284)
Q Consensus       161 ~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~  238 (284)
                         +++||...   ..+....++||++|+||++|+|.++++||++|+||++++|.  ++||+++++.|+||++++...
T Consensus       179 ---~VtiGg~~---~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~--~dVp~~~~v~G~PArvi~~~~  248 (273)
T PRK11132        179 ---SVTLGGTG---KTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVL--QPVPPHTTAAGVPARIVGKPE  248 (273)
T ss_pred             ---CcEEecCc---ccCCCcCCEECCCcEEcCCCEEcCCCEECCCCEECCCCEEC--cccCCCcEEEecCcEEeCccc
Confidence               24444321   12223457999999999999999999999999999999999  789999999999999987653

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.71  E-value=6.2e-17  Score=133.59  Aligned_cols=100  Identities=19%  Similarity=0.301  Sum_probs=91.7

Q ss_pred             EECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCC
Q 039842           92 TVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFV  171 (284)
Q Consensus        92 ~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v  171 (284)
                      .|++.++|.+.+.|.||   ++||+++.|+.+++|.++..                                ++.||+++
T Consensus        13 ~i~~~a~Va~~A~viGd---V~Ig~~vsIw~~aVlRgD~~--------------------------------~I~IG~~t   57 (176)
T COG0663          13 KIDPTAFVAPSATVIGD---VRIGAGVSIWPGAVLRGDVE--------------------------------PIRIGART   57 (176)
T ss_pred             CCCCceEECCCCEEEEe---EEECCCCEECCceEEEccCC--------------------------------ceEECCCc
Confidence            47888999999999999   99999999999999987643                                58999999


Q ss_pred             EECCCceee-----ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842          172 TIGAYCSLR-----SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA  227 (284)
Q Consensus       172 ~Ig~~~~I~-----~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~  227 (284)
                      .|.+||+||     +++||++|.||.+++| +||+||++|+||.|++|-.+..|++++++.
T Consensus        58 NIQDg~ViH~~~~~p~~IG~~vtIGH~aiv-HGc~Ig~~~lIGmgA~vldga~IG~~~iVg  117 (176)
T COG0663          58 NIQDGVVIHADPGYPVTIGDDVTIGHGAVV-HGCTIGDNVLIGMGATVLDGAVIGDGSIVG  117 (176)
T ss_pred             eecCCeEEecCCCCCeEECCCcEEcCccEE-EEeEECCCcEEecCceEeCCcEECCCcEEc
Confidence            999999996     5899999999999988 569999999999999999999999999863

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.71  E-value=3.4e-16  Score=139.18  Aligned_cols=159  Identities=17%  Similarity=0.163  Sum_probs=123.1

Q ss_pred             CCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCC-------Ccccccceeee
Q 039842           71 WVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS-------PYRFVGFVSLL  143 (284)
Q Consensus        71 ~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~g~~~~~  143 (284)
                      +...+++++.|+|++.|.+++.||++|.|+++++|.++   ++||++|.|+++++|+....+       ....+|.++.+
T Consensus        10 ~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~---v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I   86 (254)
T cd03351          10 PGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGP---TTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTI   86 (254)
T ss_pred             CCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCC---eEECCCCEEecceeecCcccceeecCCCceEEECCCCEE
Confidence            44568888999999999999999999999999999766   999999999999999753221       12334555554


Q ss_pred             ecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCC
Q 039842          144 IDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPT  222 (284)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~  222 (284)
                      .+.........     .....++||++|.|+++++| +.++||++|+|+.++.+.++++||++|+|++++.|.+++.|++
T Consensus        87 g~~~~I~~~~~-----~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~  161 (254)
T cd03351          87 REFVTIHRGTA-----QGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGR  161 (254)
T ss_pred             CCccEEecccc-----CCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECC
Confidence            43322111000     00135899999999999999 7899999999999999999999999999999999999999999


Q ss_pred             CCEEeccCceeeccCC
Q 039842          223 GELWAGNPARFVRTLT  238 (284)
Q Consensus       223 ~~vv~G~pa~~~~~~~  238 (284)
                      ++++.+. +.+.+.++
T Consensus       162 ~~~Ig~~-s~V~~~i~  176 (254)
T cd03351         162 HAMVGGG-SGVVQDVP  176 (254)
T ss_pred             CCEECcC-CEEeeecC
Confidence            9987655 55555554

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.70  E-value=2e-16  Score=141.18  Aligned_cols=160  Identities=15%  Similarity=0.153  Sum_probs=119.2

Q ss_pred             CCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCC-------Ccccccceee
Q 039842           70 QWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS-------PYRFVGFVSL  142 (284)
Q Consensus        70 ~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~g~~~~  142 (284)
                      .+...+++++.|+|++.|+++++||++|.|+++++|.++   ++||++|.|+++++|+...++       ....+|.++.
T Consensus        12 ~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~---~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~   88 (262)
T PRK05289         12 EPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGH---TTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNT   88 (262)
T ss_pred             CCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCc---cEECCCCEEcccceecCCceeecccCCCCeEEECCCCE
Confidence            344578888888888888889999999999999999766   999999999999999764332       1223444444


Q ss_pred             eecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842          143 LIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP  221 (284)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~  221 (284)
                      +.+......-.     ......++||+++.|+.++.| ++++||++|+|+.++.+.++++||++|+|+++++|.++..|+
T Consensus        89 I~e~~~I~~~~-----~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig  163 (262)
T PRK05289         89 IREFVTINRGT-----VQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIG  163 (262)
T ss_pred             ECCCeEEeccc-----ccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEEC
Confidence            43322111000     001124678888888888888 478889999999998899999999999999999999999999


Q ss_pred             CCCEEeccCceeeccCC
Q 039842          222 TGELWAGNPARFVRTLT  238 (284)
Q Consensus       222 ~~~vv~G~pa~~~~~~~  238 (284)
                      +++++.+. +.+.++++
T Consensus       164 ~~~~Ig~g-s~V~~di~  179 (262)
T PRK05289        164 AHAMVGGM-SGVSQDVP  179 (262)
T ss_pred             CCCEEeee-cceeccCC
Confidence            99987654 66666665

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.70  E-value=3.7e-16  Score=149.45  Aligned_cols=152  Identities=18%  Similarity=0.272  Sum_probs=100.9

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCC----------------EECCCCEEecCCCCCccc
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCS----------------NVQERCVLHAAWNSPYRF  136 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~----------------~I~~~~~I~~~~~~~~~~  136 (284)
                      ..|++++.|+|++.|.+++.||++|.|++++.|. +   ++||++|                .|++++.|..+.     .
T Consensus       256 ~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~---s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~-----~  326 (448)
T PRK14357        256 VEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIV-D---CEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGT-----V  326 (448)
T ss_pred             eEECCCcEEcCCcEEEeeeEECCCcEECCCceec-c---cEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcc-----c
Confidence            3566666777777777777777777777777653 2   3333333                333333332211     1


Q ss_pred             ccceeeeeccccc-----CCCCCccccccCCcceEECCCCEECCCcee--------eccEECCCCEECCCcEEcCCCEEC
Q 039842          137 VGFVSLLIDLQMS-----CPRSNSLYIAWLPAETSIERFVTIGAYCSL--------RSCTIEPECIIGQHSILMEGSMVE  203 (284)
Q Consensus       137 ~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I--------~~v~Igd~v~IG~~s~I~~gv~Ig  203 (284)
                      +|.++.+.+....     ..........+. .+++||++|.||+++.+        ++++|||+|+||.+++|.++++||
T Consensus       327 ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig  405 (448)
T PRK14357        327 LKKSVKIGNFVEIKKSTIGENTKAQHLTYL-GDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIG  405 (448)
T ss_pred             ccCCcEecCceeeeccEEcCCcCccccccc-cCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEEC
Confidence            2222222211000     000000111112 35899999999999887        469999999999999999999999


Q ss_pred             CCCEEcCCCeeCCCCeeCCCCEEeccCceeecc
Q 039842          204 THAILEAGSVLPPGRRIPTGELWAGNPARFVRT  236 (284)
Q Consensus       204 ~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~  236 (284)
                      ++++|+++++|.  .+||+++++.|.|.++++.
T Consensus       406 ~~~~i~ag~~v~--~~v~~~~~~~g~~~~~~~~  436 (448)
T PRK14357        406 KGALIGAGSVIT--EDVPPYSLALGRARQIVKE  436 (448)
T ss_pred             CCCEEcCCCEEC--CcCCCCcEEEccccEEecc
Confidence            999999999999  8999999999999998654

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.70  E-value=4.5e-16  Score=149.45  Aligned_cols=154  Identities=18%  Similarity=0.295  Sum_probs=108.2

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCC-
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCP-  151 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~-  151 (284)
                      ..+++++.|++++.|.+++.||++|.|+++++|. +   ++||++|.|+++++|....-.....+|.++.+.......+ 
T Consensus       269 v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~---~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~  344 (459)
T PRK14355        269 VVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIK-G---CRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAH  344 (459)
T ss_pred             eEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEe-C---CEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCC
Confidence            3567777888888888888888888888888885 4   7788888887777765322111122222222211000000 


Q ss_pred             ----------------CCCccccccCCcceEECCCCEECCCcee--------eccEECCCCEECCCcEEcCCCEECCCCE
Q 039842          152 ----------------RSNSLYIAWLPAETSIERFVTIGAYCSL--------RSCTIEPECIIGQHSILMEGSMVETHAI  207 (284)
Q Consensus       152 ----------------~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I--------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~  207 (284)
                                      ........+. ++++||++|.||.++++        +++.|||+|+||.+++|.++++||++++
T Consensus       345 ~~ig~~~~~~~~~ig~~~~~~~~~~i-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~  423 (459)
T PRK14355        345 VKIGNFVETKKIVMGEGSKASHLTYL-GDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSL  423 (459)
T ss_pred             CEECCCccccCCEECCCceeeeeccc-cCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCE
Confidence                            0000011222 46899999999999876        3689999999999999999999999999


Q ss_pred             EcCCCeeCCCCeeCCCCEEeccCcee
Q 039842          208 LEAGSVLPPGRRIPTGELWAGNPARF  233 (284)
Q Consensus       208 I~a~s~V~~~~~I~~~~vv~G~pa~~  233 (284)
                      |+++++|.  ++||+++++.|.+...
T Consensus       424 i~a~s~v~--~~v~~~~~~~~~~~~~  447 (459)
T PRK14355        424 IAAGTTVT--KDVPPDSLAIARSPQV  447 (459)
T ss_pred             ECCCCEEc--ccCCCCcEEEecccee
Confidence            99999999  8999999999865554

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.69  E-value=8.8e-16  Score=127.50  Aligned_cols=115  Identities=17%  Similarity=0.230  Sum_probs=89.5

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR  152 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (284)
                      ..+++++.|++++.|.+++.||++|.|++++.|.++   ++||++|.|++++.|.                         
T Consensus        18 v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~-------------------------   69 (163)
T cd05636          18 VWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGY---TVLGDGCVVGNSVEVK-------------------------   69 (163)
T ss_pred             eEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCC---CEECCCCEECCCcEEe-------------------------
Confidence            357888899999999889999999999999999755   8899999999999884                         


Q ss_pred             CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcC------------------------CCEECCCCEE
Q 039842          153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILME------------------------GSMVETHAIL  208 (284)
Q Consensus       153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~------------------------gv~Ig~~~~I  208 (284)
                                 +++|++++.|++++.+..++||+++.|++++++..                        ++.|+++++|
T Consensus        70 -----------~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~i  138 (163)
T cd05636          70 -----------NSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKT  138 (163)
T ss_pred             -----------eeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEE
Confidence                       36677777777777777777777777777776632                        5677777777


Q ss_pred             cCCCeeCCCCeeCCCCEE
Q 039842          209 EAGSVLPPGRRIPTGELW  226 (284)
Q Consensus       209 ~a~s~V~~~~~I~~~~vv  226 (284)
                      +.++.+.++..|++++++
T Consensus       139 g~~~~i~~g~~ig~~~~i  156 (163)
T cd05636         139 GINVSLNPGVKIGPGSWV  156 (163)
T ss_pred             CCCcEECCCcEECCCCEE
Confidence            777777767777766664

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=99.69  E-value=5.7e-16  Score=126.29  Aligned_cols=122  Identities=18%  Similarity=0.248  Sum_probs=91.1

Q ss_pred             eEECCCCEECC-CCEEecCCCcEEECCCCEECCCCEEecC-CCCCcccccceeeeecccccCCCCCccccccCCcceEEC
Q 039842           91 VTVCDGASVWP-GSVLRGDLNKITVGFCSNVQERCVLHAA-WNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIE  168 (284)
Q Consensus        91 v~IG~~~~I~~-~~~I~g~~~~v~IG~~~~I~~~~~I~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig  168 (284)
                      +.||++++|++ .+.+ +. ..++||++|.|++++.|... .|....                      .+.+  +..++
T Consensus         2 ~~iG~~s~i~~~~~~~-~~-~~i~IG~~~~I~~~v~i~~~~~H~~~~----------------------~~~~--p~~~~   55 (145)
T cd03349           2 ISVGDYSYGSGPDCDV-GG-DKLSIGKFCSIAPGVKIGLGGNHPTDW----------------------VSTY--PFYIF   55 (145)
T ss_pred             EEEeCceeeCCCCceE-eC-CCeEECCCCEECCCCEECCCCCCCCCC----------------------cccc--ceEee
Confidence            57888999988 4555 33 56999999999999999877 331110                      0001  11222


Q ss_pred             CCC-----EECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842          169 RFV-----TIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       169 ~~v-----~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      ++.     .........+++|||+|+||.+++|.++++||++|+|+++++|.  .++|++++++|+||++++++..+
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~--~~v~~~~v~~G~Pa~~i~~~~~~  130 (145)
T cd03349          56 GGEWEDDAKFDDWPSKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVT--KDVPPYAIVGGNPAKVIRYRFDE  130 (145)
T ss_pred             ccccccccccccccccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEc--cccCCCeEEEecCCEeehhhCCH
Confidence            222     12223344679999999999999999999999999999999999  78999999999999999875443

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.69  E-value=5.2e-16  Score=148.34  Aligned_cols=155  Identities=22%  Similarity=0.263  Sum_probs=104.3

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCC-CCcccccceeeeecccccCCC
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWN-SPYRFVGFVSLLIDLQMSCPR  152 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~-~~~~~~g~~~~~~~~~~~~~~  152 (284)
                      .|++++.|++++.|++++.||++|.|++++.|. +   +.||++|.|+++++|...+. .....+|.++.+.+... .+.
T Consensus       270 ~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~---~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i-~~~  344 (446)
T PRK14353        270 VIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLE-G---AHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKL-GEG  344 (446)
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCeEEe-c---cEECCCcEECCCeEEeccceecCCeEEcCceEEeceEE-CCC
Confidence            455566666666666666666666666665553 2   67777777777777763322 12223343333321110 011


Q ss_pred             CCccccccCCcceEECCCCEECCCcee--------eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCC
Q 039842          153 SNSLYIAWLPAETSIERFVTIGAYCSL--------RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGE  224 (284)
Q Consensus       153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I--------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~  224 (284)
                      ......... .+++||++|.||+++++        ++++||++|+||++++|.++++||++++|+++++|.  .++|+++
T Consensus       345 ~~i~~~~~i-~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~--~~v~~~~  421 (446)
T PRK14353        345 AKVNHLTYI-GDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVIT--EDVPDDA  421 (446)
T ss_pred             CEECCeeEE-cCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEEC--ccCCCCC
Confidence            000111111 35789999999999876        368999999999999999999999999999999999  8999999


Q ss_pred             EEeccCceeecc
Q 039842          225 LWAGNPARFVRT  236 (284)
Q Consensus       225 vv~G~pa~~~~~  236 (284)
                      +++|.|....+.
T Consensus       422 ~~~g~~~~~~~~  433 (446)
T PRK14353        422 LALGRARQETKP  433 (446)
T ss_pred             EEEecCceEecc
Confidence            999998865443

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.68  E-value=5.3e-16  Score=148.39  Aligned_cols=159  Identities=16%  Similarity=0.266  Sum_probs=103.0

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEec----CCC--------cEEECCCCEECCCCEEecCCC-CCcccccce
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRG----DLN--------KITVGFCSNVQERCVLHAAWN-SPYRFVGFV  140 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g----~~~--------~v~IG~~~~I~~~~~I~~~~~-~~~~~~g~~  140 (284)
                      .+++++.|++++.|.+++.||++|.|++++.|..    +..        .+.||++|.|+++|+|..... .....+|.+
T Consensus       264 ~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~  343 (450)
T PRK14360        264 ELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNF  343 (450)
T ss_pred             EECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCC
Confidence            4566677777777777777888887777776641    100        123444444444444432211 111122222


Q ss_pred             eeeecccccCCCCCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCEEcCCC
Q 039842          141 SLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAILEAGS  212 (284)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s  212 (284)
                      ..+.+... .+.....+..+. .+++||++|.||+++.+.        +++||++|+||.+++|.++++||++++|++++
T Consensus       344 ~~i~~~~i-~~~~~i~~~~~~-~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~  421 (450)
T PRK14360        344 VEIKKSQL-GEGSKVNHLSYI-GDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGS  421 (450)
T ss_pred             EEEecccc-CCCcEeccceec-CCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCC
Confidence            22211100 000011111122 358899999999999874        69999999999999999999999999999999


Q ss_pred             eeCCCCeeCCCCEEeccCceeecc
Q 039842          213 VLPPGRRIPTGELWAGNPARFVRT  236 (284)
Q Consensus       213 ~V~~~~~I~~~~vv~G~pa~~~~~  236 (284)
                      +|.  .+||+++++.|+|++.+++
T Consensus       422 ~v~--~~~~~~~~~~g~~~~~~~~  443 (450)
T PRK14360        422 TIT--KDVPDNSLAIARSRQVIKE  443 (450)
T ss_pred             EEC--ccCCCCCEEEeccceeecc
Confidence            999  8999999999998886643

>PLN02694 serine O-acetyltransferase

Probab=99.68  E-value=3.6e-16  Score=139.27  Aligned_cols=107  Identities=21%  Similarity=0.310  Sum_probs=85.8

Q ss_pred             ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECC
Q 039842           90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIER  169 (284)
Q Consensus        90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~  169 (284)
                      ++.|++++.|++++.|. ....++||++|.|+++|.|..                                   ++++|.
T Consensus       160 gvdI~p~A~IG~gv~Id-h~tGVVIGe~a~IGdnv~I~~-----------------------------------~VtLGg  203 (294)
T PLN02694        160 AVDIHPAAKIGKGILFD-HATGVVIGETAVIGNNVSILH-----------------------------------HVTLGG  203 (294)
T ss_pred             eEEeCCcceecCCEEEe-CCCCeEECCCcEECCCCEEee-----------------------------------cceeCC
Confidence            45566666666666664 334588888888888888753                                   255554


Q ss_pred             CCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC
Q 039842          170 FVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL  237 (284)
Q Consensus       170 ~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~  237 (284)
                      .   +..+..+.++|||+|+||++++|.++++||++|+|+++++|.  ++||++++++|+|++++...
T Consensus       204 ~---g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~--kdVP~~~~v~G~PAkiv~~~  266 (294)
T PLN02694        204 T---GKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVL--IDVPPRTTAVGNPARLVGGK  266 (294)
T ss_pred             c---ccccCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEEC--CcCCCCcEEEccCcEEEccC
Confidence            3   344556778999999999999999999999999999999999  89999999999999998763

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.68  E-value=3.4e-16  Score=149.64  Aligned_cols=152  Identities=14%  Similarity=0.113  Sum_probs=97.1

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCC-cccccceeeeecccccCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSP-YRFVGFVSLLIDLQMSCPRS  153 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~-~~~~g~~~~~~~~~~~~~~~  153 (284)
                      +++.+.|++++.|++++.||+++.|+++|.|...   ..| .++.|+++|+|+...... ...+|.++.+.+..      
T Consensus       265 ~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~---~~i-~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~------  334 (446)
T PRK14353        265 FSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAF---SHL-EGAHVGEGAEVGPYARLRPGAELGEGAKVGNFV------  334 (446)
T ss_pred             ECCceEECCCCEECCCCEECCCCEECCCCEECCC---eEE-eccEECCCcEECCCeEEeccceecCCeEEcCce------
Confidence            4455666666666666666666666666666432   444 467888888886554311 11112111111110      


Q ss_pred             CccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEE-------cCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842          154 NSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSIL-------MEGSMVETHAILEAGSVLPPGRRIPTGELW  226 (284)
Q Consensus       154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I-------~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv  226 (284)
                            .. .++.|++++.+++++.+.+++||++|.||+++++       ..++.||++|+|+++++|.++..|++++++
T Consensus       335 ------~i-~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i  407 (446)
T PRK14353        335 ------EV-KNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYI  407 (446)
T ss_pred             ------EE-eceEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEE
Confidence                  00 1233444444444445556788899999999876       347999999999999999999999999996


Q ss_pred             eccCceeeccCCHHHHhh
Q 039842          227 AGNPARFVRTLTHEETLE  244 (284)
Q Consensus       227 ~G~pa~~~~~~~~~~~~~  244 (284)
                       |..+.+.+++++....+
T Consensus       408 -g~~s~v~~~v~~~~~~~  424 (446)
T PRK14353        408 -ASGSVITEDVPDDALAL  424 (446)
T ss_pred             -CCCCEECccCCCCCEEE
Confidence             77788888888765543

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.67  E-value=8.7e-16  Score=148.39  Aligned_cols=157  Identities=20%  Similarity=0.277  Sum_probs=104.8

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEec----CC--------CcEEECCCCEECCCCEEecCCCCCccccccee
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRG----DL--------NKITVGFCSNVQERCVLHAAWNSPYRFVGFVS  141 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g----~~--------~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~  141 (284)
                      .+++++.|+|++.|.+++.||++|.|++++.|.+    +.        ..++||++|.|++++.|..+.     .+|...
T Consensus       273 ~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~-----vIg~~~  347 (482)
T PRK14352        273 TIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGT-----VLGEEG  347 (482)
T ss_pred             EECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCc-----EEcCCC
Confidence            5778888888888888899999999998888852    00        012233334444333333211     111111


Q ss_pred             eeecc-----cccCCCCCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          142 LLIDL-----QMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       142 ~~~~~-----~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                      .+..+     ....++....+.... .+++||++|.||.++++.        .++|||+|+||.+++|.++++||++++|
T Consensus       348 ~ig~~~~~~~~~I~~~~~i~~~~~i-~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~i  426 (482)
T PRK14352        348 KLGAFVETKNATIGRGTKVPHLTYV-GDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYT  426 (482)
T ss_pred             EECCcEEEcccEECCCcEEccCcee-cccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEE
Confidence            11100     000001111111111 357999999999999884        4999999999999999999999999999


Q ss_pred             cCCCeeCCCCeeCCCCEE-eccCceeeccCC
Q 039842          209 EAGSVLPPGRRIPTGELW-AGNPARFVRTLT  238 (284)
Q Consensus       209 ~a~s~V~~~~~I~~~~vv-~G~pa~~~~~~~  238 (284)
                      +++++|.  .++++++++ .|+|++.++++.
T Consensus       427 gags~v~--~~v~~~~~~~~~~p~~~~~~~~  455 (482)
T PRK14352        427 GAGTVIR--EDVPPGALAVSEGPQRNIEGWV  455 (482)
T ss_pred             CCCCEEc--CCCCCCcEEEeccccccccccc
Confidence            9999999  889999875 589999887754

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.67  E-value=4.3e-16  Score=143.28  Aligned_cols=152  Identities=23%  Similarity=0.332  Sum_probs=106.2

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCE-----------EecCCCC-Ccccccce
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCV-----------LHAAWNS-PYRFVGFV  140 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~-----------I~~~~~~-~~~~~g~~  140 (284)
                      ..++.++.|+|++++.+++.||++|+|+++|+|. |   +.||+++.|.+.++           |++..+. +....|..
T Consensus       269 v~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~-d---s~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~  344 (460)
T COG1207         269 VEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIK-D---SVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGAD  344 (460)
T ss_pred             EEECCceEEecCcEEeeeEEECCceEECCCcEEE-e---eEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCC
Confidence            3688999999999999999999999999998875 4   44554444443222           2222221 11112222


Q ss_pred             eeeeccc-cc----CCCCCccccccCCcceEECCCCEECCCcee--------eccEECCCCEECCCcEEcCCCEECCCCE
Q 039842          141 SLLIDLQ-MS----CPRSNSLYIAWLPAETSIERFVTIGAYCSL--------RSCTIEPECIIGQHSILMEGSMVETHAI  207 (284)
Q Consensus       141 ~~~~~~~-~~----~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I--------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~  207 (284)
                      ..+-++. ..    .....-.+.+++ +++.||.+|.||++++.        +.++|||+++||+++.+-..++||+++.
T Consensus       345 ~hIGNFVEvK~a~ig~gsKa~HLtYl-GDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~  423 (460)
T COG1207         345 VHIGNFVEVKKATIGKGSKAGHLTYL-GDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGAT  423 (460)
T ss_pred             CeEeeeEEEecccccCCccccceeee-ccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcE
Confidence            2222211 11    111223344444 47899999999999876        4599999999999999999999999999


Q ss_pred             EcCCCeeCCCCeeCCCCEEeccCc
Q 039842          208 LEAGSVLPPGRRIPTGELWAGNPA  231 (284)
Q Consensus       208 I~a~s~V~~~~~I~~~~vv~G~pa  231 (284)
                      |++||+|+  .+||++++..+.+-
T Consensus       424 iaAGStIT--~DVp~~aLai~Rar  445 (460)
T COG1207         424 IAAGSTIT--KDVPEGALAISRAR  445 (460)
T ss_pred             EcccceEc--ccCCCCceeEeecc
Confidence            99999999  99999999876533

>PLN02739 serine acetyltransferase

Probab=99.67  E-value=8.2e-16  Score=139.56  Aligned_cols=57  Identities=21%  Similarity=0.434  Sum_probs=53.4

Q ss_pred             ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCH
Q 039842          181 SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTH  239 (284)
Q Consensus       181 ~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~  239 (284)
                      .++|||+|+||+|++|.++++||++++|++|++|.  .+||++++++|+||++++....
T Consensus       257 ~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~--kDVP~~stvvG~PAriI~~~~~  313 (355)
T PLN02739        257 HPKIGDGALLGACVTILGNISIGAGAMVAAGSLVL--KDVPSHSMVAGNPAKLIGFVDE  313 (355)
T ss_pred             CcEECCCCEEcCCCEEeCCeEECCCCEECCCCEEC--CCCCCCcEEEecCCEEeccCCc
Confidence            46999999999999999999999999999999999  7899999999999999987653

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.67  E-value=1.2e-15  Score=145.17  Aligned_cols=69  Identities=23%  Similarity=0.373  Sum_probs=62.1

Q ss_pred             cceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEec-cCcee
Q 039842          163 AETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAG-NPARF  233 (284)
Q Consensus       163 ~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G-~pa~~  233 (284)
                      .+++||++|.||+++++.        +++|||+|+||.+++|.++++||++++|+++++|.  +++|+++++.| .|++.
T Consensus       341 ~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~--~~v~~~~~~~~~~~~~~  418 (430)
T PRK14359        341 GDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVT--KDVPKGSLAISRAPQKN  418 (430)
T ss_pred             cCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEc--cccCCCcEEEeccCcee
Confidence            368999999999998874        58999999999999999999999999999999999  88999999987 56654

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.67  E-value=2e-15  Score=129.76  Aligned_cols=159  Identities=14%  Similarity=0.196  Sum_probs=98.4

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC-
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR-  152 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~-  152 (284)
                      .++++++|+|.+.|..++.||++++|++++.|.++   ++||++|.|+++++|+.+..     +|..+.+......... 
T Consensus         3 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~---~~Ig~~~~i~~~~~i~~~~~-----Ig~~~~I~~~~~i~~~~   74 (205)
T cd03352           3 KIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDG---VVIGDDCVIHPNVTIYEGCI-----IGDRVIIHSGAVIGSDG   74 (205)
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCEECCC---CEECCCCEECCCCEEcCCCE-----ECCCcEECCCCEEcCCC
Confidence            35677777777777777777777777777777544   67777777777766654332     2222222221100000 


Q ss_pred             ----CC--ccccccCCcc----------------------eEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEEC
Q 039842          153 ----SN--SLYIAWLPAE----------------------TSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVE  203 (284)
Q Consensus       153 ----~~--~~~~~~~~~~----------------------v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig  203 (284)
                          ..  ..........                      +.||+++.|+.++.| +.++||++++|+.++.+.++++||
T Consensus        75 ~~~~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig  154 (205)
T cd03352          75 FGFAPDGGGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIG  154 (205)
T ss_pred             ceeEecCCcEEEcCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEEC
Confidence                00  0000000112                      344444445555444 457788888888888888899999


Q ss_pred             CCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHHH
Q 039842          204 THAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE  241 (284)
Q Consensus       204 ~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~~  241 (284)
                      ++|+|+++++|.++..|++++++.+. +.+.++.++.+
T Consensus       155 ~~~~ig~~~~v~~~~~ig~~~~i~~~-s~v~~~~~~~~  191 (205)
T cd03352         155 DNVIIGGQVGIAGHLTIGDGVVIGAG-SGVTSIVPPGE  191 (205)
T ss_pred             CCeEEcCCCEEeCCcEECCCCEEcCC-CEEeeECCCCC
Confidence            99999999999999999999997655 55556665543

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.67  E-value=1.3e-15  Score=117.39  Aligned_cols=109  Identities=21%  Similarity=0.354  Sum_probs=90.4

Q ss_pred             ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECC
Q 039842           90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIER  169 (284)
Q Consensus        90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~  169 (284)
                      ++.||++++|++++.|.++ ..+.||++|.|+++|+|....+                                 ..++.
T Consensus         1 ~v~Ig~~~~I~~~~~i~~~-~~v~IG~~~~Ig~~~~i~~~~~---------------------------------~~~~~   46 (109)
T cd04647           1 NISIGDNVYIGPGCVISAG-GGITIGDNVLIGPNVTIYDHNH---------------------------------DIDDP   46 (109)
T ss_pred             CeEECCCcEECCCCEEecC-CceEECCCCEECCCCEEECCCC---------------------------------CCCcc
Confidence            4678889999999988752 4599999999999999986533                                 23333


Q ss_pred             CCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          170 FVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       170 ~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                      +..+.......+++||++|+||.++.+.+++.|+++++|++++.|.  ..+|+++++.|+||+++
T Consensus        47 ~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v~--~~i~~~~i~~g~pa~~~  109 (109)
T cd04647          47 ERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVT--KDVPPNSIVAGNPAKVI  109 (109)
T ss_pred             ccccccccccCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEe--eECCCCCEEEccccEeC
Confidence            4444555566788999999999999999999999999999999999  78999999999999864

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.66  E-value=2.4e-15  Score=138.04  Aligned_cols=227  Identities=17%  Similarity=0.182  Sum_probs=127.0

Q ss_pred             ChhhhhhhHhhhhhhcccchhhhhhhhhhhhhhccccccccccCCCCCCCCcccccccccccceeeecC----CCCceeC
Q 039842            1 MAALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYRGQRQIIPLG----QWVPKVA   76 (284)
Q Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~   76 (284)
                      +++|+++.+.+|+|+.+.  +|...+..+.+++..-....... +.  ......+..++..+..+..++    .+.+.++
T Consensus        21 ~~~~~~a~~~~l~f~~~~--k~~~~l~~~~a~aviv~~~~~~~-~~--~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~   95 (324)
T TIGR01853        21 VAPLEKAKANHITFLANP--KYLKHLKSSQAGAVIVSPDDQGL-PA--KCAALVVKDPYLAFAKVAELFDPPPKREAGIH   95 (324)
T ss_pred             ccChhhCCCCeEEEEeCH--HHHHHHhhcCCcEEEecchhhcc-cC--cceEEEECCHHHHHHHHHHHhcccccccCCcC
Confidence            478999999999999998  99999988887777332221100 00  111122233343333322221    1112333


Q ss_pred             CCcEEc------------CCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeee
Q 039842           77 VDAYVA------------PNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLI  144 (284)
Q Consensus        77 ~~~~I~------------~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~  144 (284)
                      ++++|+            |++.|++++.||++|.|+++++|.++   ++||++|.|+++++|+...     .+|..+.+.
T Consensus        96 p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~---~~IG~~~~I~~~~~I~~~~-----~IG~~~~I~  167 (324)
T TIGR01853        96 PTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDD---VVIGDGSRIHPNVVIYERV-----QLGKNVIIH  167 (324)
T ss_pred             CCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCc---ceeCCCceECCCcEECCCC-----EECCCCEEC
Confidence            333333            33334444444455555555554322   5555555555555554221     222233222


Q ss_pred             ccccc------CCCC--CccccccCCcceEECCCCEECCCcee-----------------------eccEECCCCEECCC
Q 039842          145 DLQMS------CPRS--NSLYIAWLPAETSIERFVTIGAYCSL-----------------------RSCTIEPECIIGQH  193 (284)
Q Consensus       145 ~~~~~------~~~~--~~~~~~~~~~~v~Ig~~v~Ig~~~~I-----------------------~~v~Igd~v~IG~~  193 (284)
                      .....      ....  .......+.+.++||++|+||++++|                       ++++||++|.|+++
T Consensus       168 ~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~  247 (324)
T TIGR01853       168 SGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQ  247 (324)
T ss_pred             CCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCc
Confidence            21110      0000  00011112246889999999988877                       34566666666666


Q ss_pred             cEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHHH
Q 039842          194 SILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE  241 (284)
Q Consensus       194 s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~~  241 (284)
                      +.|..+++||++|+|++++.|.++..|++++++.+. +.+.+++++..
T Consensus       248 ~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~-s~V~~~v~~~~  294 (324)
T TIGR01853       248 VGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAK-SGVTKSIPPPG  294 (324)
T ss_pred             ceEcCccEECCCeEEccccccccCCEECCCCEEccC-CEeCCcCCCCc
Confidence            667777888888888999999999999999887665 77777777654

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.64  E-value=1.8e-15  Score=129.32  Aligned_cols=143  Identities=17%  Similarity=0.207  Sum_probs=101.7

Q ss_pred             EECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCC
Q 039842           92 TVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFV  171 (284)
Q Consensus        92 ~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v  171 (284)
                      .|+++++|++++.|.|+   +.||++|.|+++|+|..+..                                +++||++|
T Consensus        12 ~i~~~a~I~~~a~I~g~---V~IG~~~~I~~~avIrgd~~--------------------------------~i~Ig~~~   56 (196)
T PRK13627         12 VVHPTAFVHPSAVLIGD---VIVGAGVYIGPLASLRGDYG--------------------------------RLIVQAGA   56 (196)
T ss_pred             ccCCCeEECCCCEEECc---eEECCCCEECCCCEEecCCc--------------------------------cEEECCCC
Confidence            46788889999998877   99999999999999976432                                37899999


Q ss_pred             EECCCceeec-----cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC--CHHH---
Q 039842          172 TIGAYCSLRS-----CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL--THEE---  241 (284)
Q Consensus       172 ~Ig~~~~I~~-----v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~--~~~~---  241 (284)
                      .||++|+|+.     ++|++++.||.++.+ .+++||++|+||.+++|.++..|++++++. .-+.+.+..  ++..   
T Consensus        57 ~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i-~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vg-ags~V~~~~~ip~~~~~~  134 (196)
T PRK13627         57 NLQDGCIMHGYCDTDTIVGENGHIGHGAIL-HGCVIGRDALVGMNSVIMDGAVIGEESIVA-AMSFVKAGFQGEKRQLLM  134 (196)
T ss_pred             EECCCCEEeCCCCCCCEECCCCEECCCcEE-eeEEECCCCEECcCCccCCCcEECCCCEEc-CCCEEeCCcCcCCCcEEE
Confidence            9999999854     789999999999876 668888888888888888778888877743 334444433  2221   


Q ss_pred             ---HhhhhhhHHHHHHHHHHHHhccccchHHHH
Q 039842          242 ---TLEIPKLAVAINDLSKSHFSEFLPYSTVYL  271 (284)
Q Consensus       242 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (284)
                         ...++.......+..+...++|..+.++|.
T Consensus       135 G~Pa~~~~~~~~~~~~~~~~~~~~y~~~~~~~~  167 (196)
T PRK13627        135 GTPARAVRSVSDDELHWKRLNTKEYQDLVGRCH  167 (196)
T ss_pred             ecCCEEeccCCHHHHHHHHhhHHHHHHHHHHHH
Confidence               122333333344443344455555666664

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.64  E-value=4.2e-15  Score=143.60  Aligned_cols=148  Identities=22%  Similarity=0.284  Sum_probs=98.2

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeee----------
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLL----------  143 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~----------  143 (284)
                      .|++++.|++++.|.+++.||++|.|+++|.|. +   .+||++|.|+++++|....-.....+|.+..+          
T Consensus       272 ~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~-~---svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~  347 (481)
T PRK14358        272 TLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVT-D---SVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGV  347 (481)
T ss_pred             EECCCCEEeCCcEEeCCcEECCCCEECCCCEEe-e---eEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCC
Confidence            467788888888888888888888888888874 4   56666666666665532111111112222211          


Q ss_pred             --ecccc-----cCCCCCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          144 --IDLQM-----SCPRSNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       144 --~~~~~-----~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                        .+...     ...+...+..... .+++||++|.||+++++.        +++|||+|+||++|+|.++++||++++|
T Consensus       348 ~Ig~~~~i~~~~i~~~~~ig~~~~~-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i  426 (481)
T PRK14358        348 HIGNFVETKNARLDAGVKAGHLAYL-GDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFI  426 (481)
T ss_pred             EECCCEEECCceecCCcccCceEEE-CCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEE
Confidence              11100     0000011111111 458888999999888874        4799999999999999999999999999


Q ss_pred             cCCCeeCCCCeeCCCCEEec
Q 039842          209 EAGSVLPPGRRIPTGELWAG  228 (284)
Q Consensus       209 ~a~s~V~~~~~I~~~~vv~G  228 (284)
                      +++++|.  ++++++.++.+
T Consensus       427 ~~gs~v~--~~v~~~~~~~~  444 (481)
T PRK14358        427 AAGSAVH--DDVPEGAMAVA  444 (481)
T ss_pred             CCCCEEe--cccCCCCEEEe
Confidence            9999999  88999888775

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.63  E-value=3.8e-15  Score=123.73  Aligned_cols=52  Identities=29%  Similarity=0.403  Sum_probs=48.7

Q ss_pred             eeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCce
Q 039842          179 LRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR  232 (284)
Q Consensus       179 I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~  232 (284)
                      .+.++|||+|+||++++|.++++||++|+|+++++|.  .+||+++++.|+||+
T Consensus       111 ~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~--~dvp~~~~~~G~Par  162 (162)
T TIGR01172       111 KRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVL--KDVPPGATVVGVPAR  162 (162)
T ss_pred             CcCCEECCCcEEcCCCEEECCcEECCCCEECCCCEEC--CCCCCCCEEEeecCC
Confidence            3457999999999999999999999999999999999  789999999999986

Cysteine biosynthesis

>PLN02296 carbonate dehydratase

Probab=99.63  E-value=2.6e-15  Score=133.98  Aligned_cols=145  Identities=22%  Similarity=0.244  Sum_probs=106.6

Q ss_pred             ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECC
Q 039842           90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIER  169 (284)
Q Consensus        90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~  169 (284)
                      .-.|+++++|.+++.|.|+   +.||++|.|+++|+|.....                                +++||+
T Consensus        52 ~p~I~~~~~I~p~A~V~G~---V~IG~~~~I~~gavI~g~~~--------------------------------~I~IG~   96 (269)
T PLN02296         52 APVVDKDAFVAPSASVIGD---VQVGRGSSIWYGCVLRGDVN--------------------------------SISVGS   96 (269)
T ss_pred             CCccCCCCEECCCcEEEcc---eEECCCCEECCCCEEEcCCC--------------------------------ceEECC
Confidence            4458888888999998876   99999999999999975432                                489999


Q ss_pred             CCEECCCceee-----------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeecc--
Q 039842          170 FVTIGAYCSLR-----------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRT--  236 (284)
Q Consensus       170 ~v~Ig~~~~I~-----------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~--  236 (284)
                      +|.|+++|+|+           +++||++|+||.+|+| .+|+||++|+|+.+++|.++..|++++++. ..+.+.+.  
T Consensus        97 ~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI-~g~~Igd~v~IG~ga~I~~gv~Ig~~a~Ig-agSvV~~~~~  174 (269)
T PLN02296         97 GTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL-HGCTVEDEAFVGMGATLLDGVVVEKHAMVA-AGALVRQNTR  174 (269)
T ss_pred             CCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee-cCCEECCCcEECCCcEECCCeEECCCCEEC-CCCEEecCCE
Confidence            99999999995           6899999999999977 678999999999998888888888887764 22333333  


Q ss_pred             CCHHH------HhhhhhhHHHHHHHHHHHHhccccchHHHH
Q 039842          237 LTHEE------TLEIPKLAVAINDLSKSHFSEFLPYSTVYL  271 (284)
Q Consensus       237 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (284)
                      +++..      ...++...+..........++|..++++|.
T Consensus       175 I~~~~~~~G~PA~~ir~~~~~~~~~~~~~a~~y~~l~~~~~  215 (269)
T PLN02296        175 IPSGEVWAGNPAKFLRKLTEEEIAFISQSATNYSNLAQVHA  215 (269)
T ss_pred             eCCCeEEeccCcEEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222      233444445444444444555555666664

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.62  E-value=3.5e-15  Score=127.06  Aligned_cols=101  Identities=24%  Similarity=0.348  Sum_probs=85.4

Q ss_pred             eEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCC
Q 039842           91 VTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERF  170 (284)
Q Consensus        91 v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~  170 (284)
                      -.|+++++|++++.|.|+   ++||++|.|+++|+|..+..                                +++||++
T Consensus         9 p~i~~~~~I~~~a~I~G~---V~IG~~~~I~~~a~I~gd~g--------------------------------~i~Ig~~   53 (192)
T TIGR02287         9 PVVHPEAYVHPTAVLIGD---VILGKRCYVGPLASLRGDFG--------------------------------RIVLKEG   53 (192)
T ss_pred             CcCCCCcEECCCCEEEee---EEECCCCEECCCcEEEccCC--------------------------------ceEECCC
Confidence            357899999999999877   99999999999999976422                                4899999


Q ss_pred             CEECCCceee-----ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842          171 VTIGAYCSLR-----SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA  227 (284)
Q Consensus       171 v~Ig~~~~I~-----~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~  227 (284)
                      |.||++|+|+     +++||+++.||.++.| .+++|+++|+|+.++.+.++..|++++++.
T Consensus        54 t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I-~~siIg~~~~IG~ga~I~~g~~IG~~s~Vg  114 (192)
T TIGR02287        54 ANIQDNCVMHGFPGQDTVVEENGHVGHGAIL-HGCIVGRNALVGMNAVVMDGAVIGENSIVA  114 (192)
T ss_pred             CEECCCeEEeccCCCCCeECCCCEECCCCEE-cCCEECCCCEECCCcccCCCeEECCCCEEc
Confidence            9999999994     5899999999999876 568888888888888887777777776654

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.62  E-value=3.4e-15  Score=124.63  Aligned_cols=54  Identities=26%  Similarity=0.360  Sum_probs=51.3

Q ss_pred             cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC
Q 039842          182 CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL  237 (284)
Q Consensus       182 v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~  237 (284)
                      -+||++|.||+++.|.++.+||+|+.||++|+|.  ++||++++++|.||+++...
T Consensus       120 PtIg~~V~IGagAkILG~I~IGd~akIGA~sVVl--kdVP~~~tvvGvPArii~~~  173 (194)
T COG1045         120 PTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVL--KDVPPNATVVGVPARVIGRP  173 (194)
T ss_pred             CccCCCeEECCCCEEEcceEECCCCEECCCceEc--cCCCCCceEecCcceEeccC
Confidence            5899999999999999999999999999999999  99999999999999999753

>PLN02472 uncharacterized protein

Probab=99.61  E-value=4.9e-15  Score=130.53  Aligned_cols=100  Identities=26%  Similarity=0.328  Sum_probs=84.9

Q ss_pred             EECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCC
Q 039842           92 TVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFV  171 (284)
Q Consensus        92 ~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v  171 (284)
                      .|+.+++|.+++.|.|+   ++||++|.|+++++|..+..                                .++||+++
T Consensus        61 ~i~~~~~I~p~a~i~G~---V~Ig~~a~I~~gavirgd~~--------------------------------~I~IG~~t  105 (246)
T PLN02472         61 KVAVDAYVAPNVVLAGQ---VTVWDGASVWNGAVLRGDLN--------------------------------KITVGFCS  105 (246)
T ss_pred             ccCCCCEECCCCEEecC---EEECCCCEEcCCCEEecCCc--------------------------------ceEECCCC
Confidence            37888999999999877   99999999999999976532                                48999999


Q ss_pred             EECCCceee-----------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842          172 TIGAYCSLR-----------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA  227 (284)
Q Consensus       172 ~Ig~~~~I~-----------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~  227 (284)
                      .|+++|+|+           .++||++|.||.+|.| .+|+|+++|.||.+++|.+++.|++++++.
T Consensus       106 ~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L-~~~~Igd~v~IG~~svI~~gavIg~~~~Ig  171 (246)
T PLN02472        106 NVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLL-RSCTIEPECIIGQHSILMEGSLVETHSILE  171 (246)
T ss_pred             EECCCCEEeecCccccCCCCCcEECCCCEECCCcEE-CCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence            999999995           4899999999999987 578888888888888887777777776654

>PLN02357 serine acetyltransferase

Probab=99.61  E-value=5.9e-15  Score=134.97  Aligned_cols=106  Identities=22%  Similarity=0.323  Sum_probs=77.6

Q ss_pred             eEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCC
Q 039842           91 VTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERF  170 (284)
Q Consensus        91 v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~  170 (284)
                      +.|++++.|++++.|. ....++||++|.||++|.|..                                   +++||..
T Consensus       227 vdI~p~a~IG~Gv~Id-h~~giVIGe~avIGdnV~I~~-----------------------------------gVtIGg~  270 (360)
T PLN02357        227 VDIHPGAKIGQGILLD-HATGVVIGETAVVGNNVSILH-----------------------------------NVTLGGT  270 (360)
T ss_pred             eeeCCCCEECCCeEEC-CCCceEECCCCEECCCCEEeC-----------------------------------CceecCc
Confidence            4455555555555553 223466777777777766642                                   1344432


Q ss_pred             CEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC
Q 039842          171 VTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL  237 (284)
Q Consensus       171 v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~  237 (284)
                         +.......++|||+|+||++++|.++++||++++|+++++|.  .+||++++++|+||+++...
T Consensus       271 ---g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~--~dVP~~~~v~G~PArvv~~~  332 (360)
T PLN02357        271 ---GKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVL--KDVPPRTTAVGNPARLIGGK  332 (360)
T ss_pred             ---cccCCccCceeCCCeEECCceEEECCeEECCCCEECCCCEEC--cccCCCcEEECCCeEEEccC
Confidence               111123457999999999999999999999999999999999  89999999999999999864

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.60  E-value=2.2e-14  Score=137.53  Aligned_cols=70  Identities=23%  Similarity=0.296  Sum_probs=61.5

Q ss_pred             ceEECCCCEECCCcee--------eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeec
Q 039842          164 ETSIERFVTIGAYCSL--------RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVR  235 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I--------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~  235 (284)
                      +++||+++.||+++.+        ++++|||++++|.++.|.++++||++++|+++++|.  .++|++++++|..-....
T Consensus       373 ~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v~--~~~~~~~~~~~~~~~~~~  450 (456)
T PRK14356        373 DAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVIT--KDVPDGSLAIARGRQKNL  450 (456)
T ss_pred             CeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCEEe--ccCCCCcEEEEecceeeh
Confidence            5788899999998765        368999999999999999999999999999999999  899999999988655433

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.60  E-value=1.9e-14  Score=137.96  Aligned_cols=153  Identities=18%  Similarity=0.243  Sum_probs=98.7

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecC----CC--------cEEECCCCEECCCCEEecCCCCCcccccce
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD----LN--------KITVGFCSNVQERCVLHAAWNSPYRFVGFV  140 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~----~~--------~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~  140 (284)
                      ..+++++.|++++.|.+++.||++|.|++++.|.+.    ..        .+.||++|.|+++|.|....     .+|.+
T Consensus       266 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~-----~Ig~~  340 (458)
T PRK14354        266 VEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGS-----VIGEE  340 (458)
T ss_pred             cEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCC-----EEeCC
Confidence            346667777777777777888888888887777411    00        02334444444444433211     12222


Q ss_pred             eeeecccc-----cCCCCCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCE
Q 039842          141 SLLIDLQM-----SCPRSNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAI  207 (284)
Q Consensus       141 ~~~~~~~~-----~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~  207 (284)
                      +.+.+...     ..++....+.... ++++||++|.||.++.+.        +++|||+++||.+++|.++++||++++
T Consensus       341 ~~i~~~~~i~~~~i~~~~~i~~~~~~-~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~  419 (458)
T PRK14354        341 VKIGNFVEIKKSTIGEGTKVSHLTYI-GDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAY  419 (458)
T ss_pred             cEECCceEEeeeEECCCCEecceeee-cCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCE
Confidence            22211100     0111111111111 457888888888888763        589999999999999999999999999


Q ss_pred             EcCCCeeCCCCeeCCCCEEeccCcee
Q 039842          208 LEAGSVLPPGRRIPTGELWAGNPARF  233 (284)
Q Consensus       208 I~a~s~V~~~~~I~~~~vv~G~pa~~  233 (284)
                      |+++++|.  ++||++++++|.|..+
T Consensus       420 v~~~~~v~--~~~~~~~~~~~~~~~~  443 (458)
T PRK14354        420 IAAGSTIT--KDVPEDALAIARARQV  443 (458)
T ss_pred             ECCCCEEC--CCCCCCCEEEecccee
Confidence            99999999  8999999999997765

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.59  E-value=4.9e-14  Score=117.61  Aligned_cols=48  Identities=21%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCe
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSV  213 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~  213 (284)
                      ++||++|+||.+|.|..++||++|+||+++.| .++.|+++++++++++
T Consensus        83 ~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i-~~~~i~~~~~v~~~~~  130 (167)
T cd00710          83 AYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVV-DGVEIPPGRYVPAGAV  130 (167)
T ss_pred             EEECCCCEECCCCEEECCEECCCCEEcCCCEE-eCCEeCCCCEECCCCE
Confidence            44444444444444444444444444444444 2344444444443333

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=99.58  E-value=3.8e-15  Score=125.96  Aligned_cols=55  Identities=25%  Similarity=0.516  Sum_probs=52.9

Q ss_pred             EECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCH
Q 039842          183 TIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTH  239 (284)
Q Consensus       183 ~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~  239 (284)
                      .||||||||++++|.++++||+|++|++|++|.  ++||++++.+|+|||.++..++
T Consensus       202 ~Igd~vliGaGvtILgnV~IGegavIaAGsvV~--kDVP~~~~AvGnPAklIg~~~e  256 (269)
T KOG4750|consen  202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVL--KDVPPNTLAVGNPAKLIGKIDE  256 (269)
T ss_pred             cccCCeEEccccEEeCCeeECCCcEEeccceEE--eccCCCceecCCchhhcccccc
Confidence            899999999999999999999999999999999  9999999999999999987665

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.58  E-value=4.4e-14  Score=117.29  Aligned_cols=101  Identities=16%  Similarity=0.179  Sum_probs=74.3

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS  153 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (284)
                      .+++++.|++++.|.+++.||++|.|++++.|. +   ..||+++.|+.++.+.                          
T Consensus        37 ~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~-~---siig~~~~I~~~~~i~--------------------------   86 (163)
T cd05636          37 IIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVK-N---SIIMDGTKVPHLNYVG--------------------------   86 (163)
T ss_pred             EECCCCEECCCCEEcCCCEECCCCEECCCcEEe-e---eEecCCCEeccCCEEe--------------------------
Confidence            455666666666666666666666666666663 3   5566666666666552                          


Q ss_pred             CccccccCCcceEECCCCEECCCceee-------------------------ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          154 NSLYIAWLPAETSIERFVTIGAYCSLR-------------------------SCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I~-------------------------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                                +++|++++.|++++.+.                         ++.|||+++||.++.|.+++.|+++++|
T Consensus        87 ----------~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i  156 (163)
T cd05636          87 ----------DSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWV  156 (163)
T ss_pred             ----------cCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEE
Confidence                      36788999999888773                         4789999999999999999999999999


Q ss_pred             cCCCee
Q 039842          209 EAGSVL  214 (284)
Q Consensus       209 ~a~s~V  214 (284)
                      +++++|
T Consensus       157 ~agsvV  162 (163)
T cd05636         157 YPGCVV  162 (163)
T ss_pred             CCCcEe
Confidence            998876

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.57  E-value=2e-14  Score=118.42  Aligned_cols=99  Identities=21%  Similarity=0.345  Sum_probs=82.0

Q ss_pred             ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842           93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT  172 (284)
Q Consensus        93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~  172 (284)
                      |.++++|+++++|.++   +.||++|.|+++|+|....                                .+++||++|.
T Consensus         3 i~~~~~i~~~a~i~g~---v~IG~~~~I~~~~~i~~~~--------------------------------~~i~IG~~~~   47 (155)
T cd04745           3 VDPSSFVHPTAVLIGD---VIIGKNCYIGPHASLRGDF--------------------------------GRIVIRDGAN   47 (155)
T ss_pred             cCCCeEECCCCEEEcc---EEECCCCEECCCcEEeCCC--------------------------------CcEEECCCCE
Confidence            5778888999998776   9999999999999997532                                2489999999


Q ss_pred             ECCCcee-----eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842          173 IGAYCSL-----RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA  227 (284)
Q Consensus       173 Ig~~~~I-----~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~  227 (284)
                      |+++|+|     ++++||++|+|+.++.+ .++.||++|+|+++++|.++..|++++++.
T Consensus        48 Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i-~~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig  106 (155)
T cd04745          48 VQDNCVIHGFPGQDTVLEENGHIGHGAIL-HGCTIGRNALVGMNAVVMDGAVIGEESIVG  106 (155)
T ss_pred             ECCCCEEeecCCCCeEEcCCCEECCCcEE-ECCEECCCCEECCCCEEeCCCEECCCCEEC
Confidence            9999999     56999999999999876 468888888888887777777777776643

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>PRK10191 putative acyl transferase; Provisional

Probab=99.56  E-value=4.3e-14  Score=115.06  Aligned_cols=52  Identities=23%  Similarity=0.351  Sum_probs=49.0

Q ss_pred             ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          181 SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       181 ~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                      .++|||+|+||+++.+.+++.||++++|+++++|.  .++|+++++.|.||++.
T Consensus        92 ~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~--~dv~~~~~v~G~pA~~~  143 (146)
T PRK10191         92 CPHIGNGVELGANVIILGDITIGNNVTVGAGSVVL--DSVPDNALVVGEKARVK  143 (146)
T ss_pred             CCEECCCcEEcCCCEEeCCCEECCCCEECCCCEEC--CccCCCcEEEccCcEEE
Confidence            45999999999999999999999999999999999  89999999999999864

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.56  E-value=1.9e-14  Score=118.32  Aligned_cols=98  Identities=21%  Similarity=0.303  Sum_probs=84.1

Q ss_pred             ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842           93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT  172 (284)
Q Consensus        93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~  172 (284)
                      ++++++|+++++|.|+   +.||++|.|+++++|....                                .+++||+++.
T Consensus         2 ~~~~~~i~~~a~i~g~---v~ig~~~~I~~~~~I~~~~--------------------------------~~~~IG~~~~   46 (153)
T cd04645           2 IDPSAFIAPNATVIGD---VTLGEGSSVWFGAVLRGDV--------------------------------NPIRIGERTN   46 (153)
T ss_pred             ccCCeEECCCCEEEEe---EEECCCcEEcCCeEEECCC--------------------------------CceEECCCCE
Confidence            6889999999999876   9999999999999997532                                2589999999


Q ss_pred             ECCCceeec-----cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842          173 IGAYCSLRS-----CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW  226 (284)
Q Consensus       173 Ig~~~~I~~-----v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv  226 (284)
                      |+++|+|..     ++||++|+|+.++.+. ++.|+++++|++++.|..+..|++++.+
T Consensus        47 I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i  104 (153)
T cd04645          47 IQDGSVLHVDPGYPTIIGDNVTVGHGAVLH-GCTIGDNCLIGMGAIILDGAVIGKGSIV  104 (153)
T ss_pred             ECCCcEEecCCCCCeEEcCCcEECCCcEEe-eeEECCCCEECCCCEEcCCCEECCCCEE
Confidence            999999976     6999999999999885 5888888888888888777777777664

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.55  E-value=1.2e-13  Score=114.96  Aligned_cols=107  Identities=12%  Similarity=0.225  Sum_probs=91.5

Q ss_pred             ceeCCCcEEcCCcEEe---cceEECCCCEECCCCEEecCC-------CcEEECCCCEECCCCEEecCCCCCcccccceee
Q 039842           73 PKVAVDAYVAPNVVLA---GQVTVCDGASVWPGSVLRGDL-------NKITVGFCSNVQERCVLHAAWNSPYRFVGFVSL  142 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~---~~v~IG~~~~I~~~~~I~g~~-------~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~  142 (284)
                      ..++++++|++++.|.   +.+.||++|.|++++.|..+.       ..+.||+++.|..++.|.               
T Consensus        18 v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~---------------   82 (164)
T cd04646          18 VTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCE---------------   82 (164)
T ss_pred             eEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEE---------------
Confidence            3688999999999985   568999999999999997431       246788888888888774               


Q ss_pred             eecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeC
Q 039842          143 LIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLP  215 (284)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~  215 (284)
                                           +++||++|+||.+|.| .+++||++|+||++|+|.+++.|+++++++++..+.
T Consensus        83 ---------------------~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~  135 (164)
T cd04646          83 ---------------------ALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLR  135 (164)
T ss_pred             ---------------------eeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEE
Confidence                                 3899999999999999 679999999999999999999999999998887776

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.54  E-value=1.2e-13  Score=105.58  Aligned_cols=99  Identities=17%  Similarity=0.308  Sum_probs=73.7

Q ss_pred             eEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCC
Q 039842           91 VTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERF  170 (284)
Q Consensus        91 v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~  170 (284)
                      +.|++++.|++++.|. +...+.||+++.|+++|.|..                                   ++.|+++
T Consensus         3 ~~i~~~~~ig~~~~i~-~~~~~~ig~~~~Ig~~~~i~~-----------------------------------~~~i~~~   46 (101)
T cd03354           3 IDIHPGAKIGPGLFID-HGTGIVIGETAVIGDNCTIYQ-----------------------------------GVTLGGK   46 (101)
T ss_pred             eEeCCCCEECCCEEEC-CCCeEEECCCCEECCCCEEcC-----------------------------------CCEECCC
Confidence            4556666666666663 323466777777777766531                                   1334433


Q ss_pred             CEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccC
Q 039842          171 VTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNP  230 (284)
Q Consensus       171 v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~p  230 (284)
                      +.+   ..+.+++||++|+|+.++.+.++++||++|+|+++++|.  ..+|++.+++|+|
T Consensus        47 ~~~---~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~--~~~~~~~~~~G~P  101 (101)
T cd03354          47 GKG---GGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVT--KDVPANSTVVGVP  101 (101)
T ss_pred             ccC---CcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCCEEC--cccCCCCEEEeCC
Confidence            332   136888999999999999999999999999999999999  6799999999998

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.51  E-value=2e-13  Score=130.69  Aligned_cols=152  Identities=14%  Similarity=0.203  Sum_probs=87.5

Q ss_pred             EEcCCc-EEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc----cCCCCC
Q 039842           80 YVAPNV-VLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM----SCPRSN  154 (284)
Q Consensus        80 ~I~~~a-~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~----~~~~~~  154 (284)
                      ++++++ .+.+++.||+++.|++++.|.++   ++||++|.|++++.|...      .+|.++.+.....    ......
T Consensus       251 ~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~I~~~~~I~~~------~I~~~~~I~~~~i~~~~ig~~~~  321 (450)
T PRK14360        251 FIDPASCTISETVELGPDVIIEPQTHLRGN---TVIGSGCRIGPGSLIENS------QIGENVTVLYSVVSDSQIGDGVK  321 (450)
T ss_pred             EecCCeEEEeCCEEECCCCEECCCCEEeCC---cEECCCCEECCCcEEEEE------EEcCCCEEeeeEEeeccccCCcE
Confidence            455554 35666666666666666666543   566666666666655311      0111111100000    000000


Q ss_pred             ccccccCCcceEECCCCEECCCcee-----------------eccEECCCCEECCCcEEcC-------CCEECCCCEEcC
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSL-----------------RSCTIEPECIIGQHSILME-------GSMVETHAILEA  210 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I-----------------~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~a  210 (284)
                      .+.......+++||++|.|+.++.+                 ..+.||++|.||+++++..       +++||++|+||+
T Consensus       322 I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~  401 (450)
T PRK14360        322 IGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGA  401 (450)
T ss_pred             ECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCC
Confidence            0001112223555555555555444                 3456888888888887743       789999999999


Q ss_pred             CCeeCCCCeeCCCCEEeccCceeeccCCHHH
Q 039842          211 GSVLPPGRRIPTGELWAGNPARFVRTLTHEE  241 (284)
Q Consensus       211 ~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~~  241 (284)
                      +++|.++..|+++++ +|..+.+.+++++..
T Consensus       402 ~~~i~~~~~ig~~~~-v~~~~~v~~~~~~~~  431 (450)
T PRK14360        402 NSVLVAPITLGEDVT-VAAGSTITKDVPDNS  431 (450)
T ss_pred             CCEEeCCcEECCCCE-ECCCCEECccCCCCC
Confidence            999999999999877 456677777776653

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.51  E-value=3.7e-13  Score=118.97  Aligned_cols=120  Identities=23%  Similarity=0.277  Sum_probs=74.9

Q ss_pred             eeCCCcEEcCCcEEecceEE-----CCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc
Q 039842           74 KVAVDAYVAPNVVLAGQVTV-----CDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM  148 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~I-----G~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~  148 (284)
                      ++.+++.|.+++.|+.++.|     ..+++|++++.|...   ++||.+|.||++|.|.++....    |          
T Consensus       102 rv~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~---a~IG~~v~IG~nv~I~~g~~Ig----G----------  164 (269)
T TIGR00965       102 RVVPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTW---ATVGSCAQIGKNVHLSGGVGIG----G----------  164 (269)
T ss_pred             EECCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCC---cEECCCCEECCCCEEcCCcccC----C----------
Confidence            44444444444444444433     234555566655432   5566666666666665443210    0          


Q ss_pred             cCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCC-------EEcCCCeeCCC
Q 039842          149 SCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHA-------ILEAGSVLPPG  217 (284)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~-------~I~a~s~V~~~  217 (284)
                             ...+...++++||++|+||++|.| .+++||++++||++++|.++++|.+..       .|.++++|.+|
T Consensus       165 -------~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~~g  234 (269)
T TIGR00965       165 -------VLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVVSG  234 (269)
T ss_pred             -------CcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEecC
Confidence                   000112356999999999999999 689999999999999999999999864       34555555544

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.50  E-value=2.4e-13  Score=109.49  Aligned_cols=100  Identities=16%  Similarity=0.221  Sum_probs=68.4

Q ss_pred             cEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccc
Q 039842           79 AYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYI  158 (284)
Q Consensus        79 ~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  158 (284)
                      +.|.|.+++...+.||++++|.+++++..+   +.||++|.|..  .|.                               
T Consensus         2 ~~i~~~~~V~~~a~IG~GtvI~~gavV~~~---a~IG~~~iIn~--~ig-------------------------------   45 (147)
T cd04649           2 VRIADADRVRLGAYLAEGTTVMHEGFVNFN---AGTLGNCMVEG--RIS-------------------------------   45 (147)
T ss_pred             eEecCCCEECCCCEECCCcEECCCCEEccC---CEECCCeEECC--ccc-------------------------------
Confidence            455666666667777777777777776544   56666666541  111                               


Q ss_pred             ccCCcceEECCCCEECCCceee---------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842          159 AWLPAETSIERFVTIGAYCSLR---------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI  220 (284)
Q Consensus       159 ~~~~~~v~Ig~~v~Ig~~~~I~---------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I  220 (284)
                          .+++||++|.||++|.|.         ++.||++|+||.+++|  ++.||++|+|+++++|.+++.|
T Consensus        46 ----~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i  110 (147)
T cd04649          46 ----SGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGTKV  110 (147)
T ss_pred             ----CCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCeEE
Confidence                124555555555555552         3889999999999999  6999999999999998866655

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.50  E-value=1.6e-13  Score=119.59  Aligned_cols=107  Identities=21%  Similarity=0.343  Sum_probs=86.9

Q ss_pred             CCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCc
Q 039842           76 AVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNS  155 (284)
Q Consensus        76 ~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (284)
                      .+++.|.|++++..+++|+++++|.+++.|.-+   ..++++|.|.-+++++.                           
T Consensus       106 ~~g~RI~p~a~VR~ga~i~~gtvvM~~sfVNig---A~~~~gtMVd~~as~G~---------------------------  155 (271)
T COG2171         106 PEGVRIVPGAIVRLGAYIAKGTVVMPESFVNIG---AGTGEGTMVDGRASVGS---------------------------  155 (271)
T ss_pred             cCceeecCccEEeeccEECCCcEEcccceEEEC---cccCcceEEeeeeeeec---------------------------
Confidence            445888888888888888888888887777533   45666666666666542                           


Q ss_pred             cccccCCcceEECCCCEECCCceee---------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842          156 LYIAWLPAETSIERFVTIGAYCSLR---------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI  220 (284)
Q Consensus       156 ~~~~~~~~~v~Ig~~v~Ig~~~~I~---------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I  220 (284)
                              .++||++|.||.++.|.         ++.|||||+||++|.+..|+.+|++|+|++|+.|++++.+
T Consensus       156 --------~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki  221 (271)
T COG2171         156 --------CAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKI  221 (271)
T ss_pred             --------cEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcce
Confidence                    38899999999999983         5899999999999999999999999999999999955543

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.49  E-value=3.5e-13  Score=128.83  Aligned_cols=152  Identities=14%  Similarity=0.199  Sum_probs=88.9

Q ss_pred             cEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcc
Q 039842           85 VVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAE  164 (284)
Q Consensus        85 a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (284)
                      +.+.+++.||+++.|++++.|.++   ++||++|.|+++|+|....-.....++.++.+.+.. ...+...+.......+
T Consensus       256 ~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~-ig~~~~Ig~~~~i~~~  331 (451)
T TIGR01173       256 FDIRGTVEIGRDVEIDPNVILEGK---VKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSE-IGEGCDVGPFARLRPG  331 (451)
T ss_pred             EEECCccEECCCCEEcCCeEEeCc---eEECCCCEECCCcEEeeeEecCCCEEeeecEEeccc-ccCCcEECCeeEECCC
Confidence            345666677777777777777544   677777777777766532221222222222221110 0001011111112223


Q ss_pred             eEECCCCEECCCcee-----------------eccEECCCCEECCCcEEcC-------CCEECCCCEEcCCCeeCCCCee
Q 039842          165 TSIERFVTIGAYCSL-----------------RSCTIEPECIIGQHSILME-------GSMVETHAILEAGSVLPPGRRI  220 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I-----------------~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~a~s~V~~~~~I  220 (284)
                      ++||++|.|++++.+                 .++.||++|+||+++++..       +++||++|+||.+++|.++..|
T Consensus       332 ~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~i  411 (451)
T TIGR01173       332 SVLGAGVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKV  411 (451)
T ss_pred             CEECCCcEEccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEE
Confidence            455555555554433                 3467777778888777754       5899999999999999999999


Q ss_pred             CCCCEEeccCceeeccCCHHH
Q 039842          221 PTGELWAGNPARFVRTLTHEE  241 (284)
Q Consensus       221 ~~~~vv~G~pa~~~~~~~~~~  241 (284)
                      ++++++. ..+.+.+++++..
T Consensus       412 g~~~~i~-~g~~v~~~v~~~~  431 (451)
T TIGR01173       412 GDGATIA-AGSTVTKDVPEGA  431 (451)
T ss_pred             CCCCEEc-cCCEECccCCCCc
Confidence            9998854 4577777777654

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=9.9e-14  Score=132.54  Aligned_cols=105  Identities=22%  Similarity=0.367  Sum_probs=93.9

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      -++.+.+.+.+.++.++.||.++.|+.++.|. +   .+||+||.||.||+|.                           
T Consensus       318 k~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~-N---SVIG~~c~IgsN~~I~---------------------------  366 (673)
T KOG1461|consen  318 KSPDVVLSHSVIVGANVVIGAGTKIGSGSKIS-N---SVIGANCRIGSNVRIK---------------------------  366 (673)
T ss_pred             cCccceehhhccccceEEecccccccCCCeee-c---ceecCCCEecCceEEe---------------------------
Confidence            36778888889999999999999999999996 6   8999999999999995                           


Q ss_pred             ccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCe
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRR  219 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~  219 (284)
                               ++.||++|.||+||.|+.+.|+|+|.|++++.+.+||+||.+++++.+-++..++.
T Consensus       367 ---------~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~  422 (673)
T KOG1461|consen  367 ---------NSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSK  422 (673)
T ss_pred             ---------eeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCcccccccc
Confidence                     47999999999999999999999999999999999998888888888777776633

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.48  E-value=3.4e-13  Score=118.13  Aligned_cols=109  Identities=18%  Similarity=0.276  Sum_probs=91.7

Q ss_pred             ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842           93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT  172 (284)
Q Consensus        93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~  172 (284)
                      ++.++.|++++.|.+.   +.||++|.|++++.|..                                   +++||++|.
T Consensus        83 vg~~~~I~~~a~I~g~---v~IG~~~~I~~~~~I~~-----------------------------------~~~IG~~~~  124 (231)
T TIGR03532        83 KNINARIEPGAIIRDQ---VIIGDNAVIMMGAVINI-----------------------------------GAEIGEGTM  124 (231)
T ss_pred             cccccEECCCCEEeCC---eEECCCCEEecCcccCC-----------------------------------CeEECCCCE
Confidence            6778888888888654   89999999999998853                                   489999999


Q ss_pred             ECCCceee-ccEECCCCEECCCcEEcC--------CCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842          173 IGAYCSLR-SCTIEPECIIGQHSILME--------GSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       173 Ig~~~~I~-~v~Igd~v~IG~~s~I~~--------gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      |+.++.|. .++||++|+||.++.|.+        ++.||++|+|+++++|.+++.|++++++ |..+.+.+++++.
T Consensus       125 I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~I-gagsvV~~di~~~  200 (231)
T TIGR03532       125 IDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVV-AAGAIVTEDVPPN  200 (231)
T ss_pred             EccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEE-CCCCEEccccCCC
Confidence            99999994 899999999999999974        6899999999999999999999998885 4556666665544

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.48  E-value=1.2e-12  Score=111.59  Aligned_cols=59  Identities=15%  Similarity=0.190  Sum_probs=41.9

Q ss_pred             ccEECCCCEECCCcEEc-------CCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842          181 SCTIEPECIIGQHSILM-------EGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       181 ~v~Igd~v~IG~~s~I~-------~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      .+.||++|.||+++.+.       .+++||++++|+.++++.++..|++++++. .-+.+.+++++.
T Consensus       119 ~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~-~gs~V~~~v~~~  184 (193)
T cd03353         119 DAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIA-AGSTITKDVPPG  184 (193)
T ss_pred             ccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEEC-CCCEEccccCCC
Confidence            45666777777776653       257888899999998888888888888854 445566665553

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.48  E-value=2e-13  Score=112.48  Aligned_cols=99  Identities=21%  Similarity=0.345  Sum_probs=85.4

Q ss_pred             ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842           93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT  172 (284)
Q Consensus        93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~  172 (284)
                      ++++++|++++.|.++   +.||++|.|+++++|....                                .+++||+++.
T Consensus         3 ~~~~~~i~~~~~i~~~---v~iG~~~~I~~~a~I~~~~--------------------------------~~i~Ig~~~~   47 (154)
T cd04650           3 ISPKAYVHPTSYVIGD---VVIGELTSVWHYAVIRGDN--------------------------------DSIYIGKYSN   47 (154)
T ss_pred             cCCCeEECCCCEEEee---EEECCCCEEcCCeEEEcCC--------------------------------CcEEECCCCE
Confidence            6788899999999866   9999999999999997531                                2489999999


Q ss_pred             ECCCceeec-----cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842          173 IGAYCSLRS-----CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA  227 (284)
Q Consensus       173 Ig~~~~I~~-----v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~  227 (284)
                      |+++|.|..     ++||+++.|+.++.+ .+++||++|+|+.++.+.++..|++++++.
T Consensus        48 Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg  106 (154)
T cd04650          48 VQENVSIHTDHGYPTEIGDYVTIGHNAVV-HGAKVGNYVIVGMGAILLNGAKIGDHVIIG  106 (154)
T ss_pred             ECCCCEEEeCCCCCeEECCCCEECCCcEE-ECcEECCCCEEcCCCEEeCCCEECCCCEEC
Confidence            999999975     899999999999988 678899999988888888788888887765

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.48  E-value=6.9e-13  Score=128.24  Aligned_cols=76  Identities=12%  Similarity=0.191  Sum_probs=59.3

Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCcEEcC-------CCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILME-------GSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL  237 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~  237 (284)
                      ++|++++.|++.+.+.+++||++|+||+++++..       +++||++|+|+.+++|.++..|+++++ .|..+.+.+++
T Consensus       358 ~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~-igags~v~~~v  436 (482)
T PRK14352        358 ATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAY-TGAGTVIREDV  436 (482)
T ss_pred             cEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcE-ECCCCEEcCCC
Confidence            4555666666666667789999999999998863       589999999999999999999999887 45556666776


Q ss_pred             CHHH
Q 039842          238 THEE  241 (284)
Q Consensus       238 ~~~~  241 (284)
                      ++..
T Consensus       437 ~~~~  440 (482)
T PRK14352        437 PPGA  440 (482)
T ss_pred             CCCc
Confidence            6554

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.47  E-value=8.8e-13  Score=126.70  Aligned_cols=157  Identities=17%  Similarity=0.241  Sum_probs=94.1

Q ss_pred             cEEcCCc-EEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccc
Q 039842           79 AYVAPNV-VLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLY  157 (284)
Q Consensus        79 ~~I~~~a-~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  157 (284)
                      ..+++.+ .|++++.||+++.|++++.|.++   ++||++|.|+++|+|....-.....++.++.+.+.. ..+....+.
T Consensus       256 ~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~-i~~~~~ig~  331 (459)
T PRK14355        256 TLIDPETTYIDRGVVIGRDTTIYPGVCISGD---TRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSV-VGDDVAIGP  331 (459)
T ss_pred             EEECCCceEECCCeEEcCCCEEeCCcEEeCC---CEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCE-ECCCCEECC
Confidence            4666664 46777777777777777777644   677777777777777532111222222222222110 000101111


Q ss_pred             cccCCcceEECCCCEECCCce-----------------eeccEECCCCEECCCcEEc-------CCCEECCCCEEcCCCe
Q 039842          158 IAWLPAETSIERFVTIGAYCS-----------------LRSCTIEPECIIGQHSILM-------EGSMVETHAILEAGSV  213 (284)
Q Consensus       158 ~~~~~~~v~Ig~~v~Ig~~~~-----------------I~~v~Igd~v~IG~~s~I~-------~gv~Ig~~~~I~a~s~  213 (284)
                      ......+++|++++.||.++.                 +..+.||++|.||+++++.       .++.||++|+|+++++
T Consensus       332 ~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~  411 (459)
T PRK14355        332 MAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQ  411 (459)
T ss_pred             CCEECCCCEeCCCCEECCCccccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCE
Confidence            111223455555555555432                 2346888999999988763       3688999999999999


Q ss_pred             eCCCCeeCCCCEEeccCceeeccCCHH
Q 039842          214 LPPGRRIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       214 V~~~~~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      |.++..|++++++.+ .+.+.+++++.
T Consensus       412 i~~~~~ig~~~~i~a-~s~v~~~v~~~  437 (459)
T PRK14355        412 FVAPVTVGRNSLIAA-GTTVTKDVPPD  437 (459)
T ss_pred             EeCCcEECCCCEECC-CCEEcccCCCC
Confidence            999999999988653 35555666554

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.46  E-value=1.3e-12  Score=116.33  Aligned_cols=118  Identities=27%  Similarity=0.316  Sum_probs=79.2

Q ss_pred             CCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCc
Q 039842           76 AVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNS  155 (284)
Q Consensus        76 ~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (284)
                      +++++|++++.|. ...++.+++|++++.|...   +.||++|.||++|.|.........                    
T Consensus       113 ~~ga~Ig~gavI~-p~~V~iGa~Ig~gt~I~~~---a~IG~~a~IG~nv~I~~gv~I~g~--------------------  168 (272)
T PRK11830        113 RRGAYIAPNVVLM-PSYVNIGAYVDEGTMVDTW---ATVGSCAQIGKNVHLSGGVGIGGV--------------------  168 (272)
T ss_pred             CCCCEECCCcEEE-EEEECCCCEECCCcEEccc---cEECCCCEECCCcEECCCccCCCC--------------------
Confidence            4444444444444 2344455666666666433   667777777777777654431100                    


Q ss_pred             cccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCC-------EEcCCCeeCCCC
Q 039842          156 LYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHA-------ILEAGSVLPPGR  218 (284)
Q Consensus       156 ~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~-------~I~a~s~V~~~~  218 (284)
                       .......+++||++|+||.+|.| .+++||++|.||++++|.+++.|++.+       .|.++++|.+++
T Consensus       169 -~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svvv~g~  238 (272)
T PRK11830        169 -LEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVVVPGS  238 (272)
T ss_pred             -ccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEEecCc
Confidence             00012235999999999999998 789999999999999999999999865       467777776553

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.46  E-value=5.1e-13  Score=129.14  Aligned_cols=157  Identities=19%  Similarity=0.195  Sum_probs=95.5

Q ss_pred             EcCCcE-EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccc
Q 039842           81 VAPNVV-LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIA  159 (284)
Q Consensus        81 I~~~a~-i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  159 (284)
                      ++|.+. +.+++.||++|.|+++++|.+.   ++||++|.|+++|+|+...-.....++.++.+.+. ....+.......
T Consensus       260 ~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~---v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~-~ig~~~~ig~~~  335 (481)
T PRK14358        260 QDPGTILIEDTVTLGRDVTIEPGVLLRGQ---TRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGA-EVGAGSDVGPFA  335 (481)
T ss_pred             ecCCeeeccCCcEECCCCEEeCCcEEeCC---cEECCCCEECCCCEEeeeEECCCCEEeecceecCC-eEeCceEECCcc
Confidence            344444 3567777777777777777654   66777777777766643221112222222222110 000000111111


Q ss_pred             cCCcceEECCCCEECCCce-----------------eeccEECCCCEECCCcEEcC-------CCEECCCCEEcCCCeeC
Q 039842          160 WLPAETSIERFVTIGAYCS-----------------LRSCTIEPECIIGQHSILME-------GSMVETHAILEAGSVLP  215 (284)
Q Consensus       160 ~~~~~v~Ig~~v~Ig~~~~-----------------I~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~a~s~V~  215 (284)
                      ....++.||+++.|+.++.                 +..++||++|.||.++++..       ++.||++++|+++++|.
T Consensus       336 ~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~  415 (481)
T PRK14358        336 RLRPGTVLGEGVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLI  415 (481)
T ss_pred             EEcCCcEECCCCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEc
Confidence            1223456666666666443                 35688999999999998854       58999999999999999


Q ss_pred             CCCeeCCCCEEeccCceeeccCCHHHH
Q 039842          216 PGRRIPTGELWAGNPARFVRTLTHEET  242 (284)
Q Consensus       216 ~~~~I~~~~vv~G~pa~~~~~~~~~~~  242 (284)
                      ++..|++++++. ..+.+.+++++...
T Consensus       416 ~~~~Ig~~~~i~-~gs~v~~~v~~~~~  441 (481)
T PRK14358        416 APRVVGDAAFIA-AGSAVHDDVPEGAM  441 (481)
T ss_pred             CCcEECCCCEEC-CCCEEecccCCCCE
Confidence            999999999865 34566666665543

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.45  E-value=3.9e-12  Score=105.48  Aligned_cols=101  Identities=19%  Similarity=0.377  Sum_probs=71.2

Q ss_pred             CceeCCCcEEcCCcEEecc---eEECCCCEECCCCEEecCC---------CcEEECCCCEECCCCEEecCCCCCcccccc
Q 039842           72 VPKVAVDAYVAPNVVLAGQ---VTVCDGASVWPGSVLRGDL---------NKITVGFCSNVQERCVLHAAWNSPYRFVGF  139 (284)
Q Consensus        72 ~~~i~~~~~I~~~a~i~~~---v~IG~~~~I~~~~~I~g~~---------~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~  139 (284)
                      ...+++.++|++++.|.++   +.||++|.|+++++|.+..         .+++||+++.|++++++.            
T Consensus        21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~------------   88 (161)
T cd03359          21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVN------------   88 (161)
T ss_pred             CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEE------------
Confidence            3468999999999999875   7999999999999997531         357899999999999884            


Q ss_pred             eeeeecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          140 VSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                                              +++|++++.||++++| .+++|+++++|+.++.|.+++.|++++++
T Consensus        89 ------------------------~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv  134 (161)
T cd03359          89 ------------------------AAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVV  134 (161)
T ss_pred             ------------------------eeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEE
Confidence                                    2678888877777654 23445555544444444444444444433

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.41  E-value=1.8e-12  Score=115.99  Aligned_cols=54  Identities=19%  Similarity=0.440  Sum_probs=43.8

Q ss_pred             eEECCCCEECCCcee-----ec----cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842          165 TSIERFVTIGAYCSL-----RS----CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI  220 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I-----~~----v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I  220 (284)
                      ++||++|.||.+|.|     .+    +.||++|+||++|.|  ++.||++|+|++|++|.+++.|
T Consensus       225 avIGhds~IG~gasIg~tLsGg~~~~V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI  287 (341)
T TIGR03536       225 VMVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKV  287 (341)
T ss_pred             CEECCCCEECCCCEEeEEEeCCCceeEEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEE
Confidence            455555555555555     33    899999999999999  9999999999999999987766

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.41  E-value=4.3e-12  Score=109.18  Aligned_cols=65  Identities=20%  Similarity=0.333  Sum_probs=55.3

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      +++.+.|++++.|. ++.||+++.|+++|.|. +   ++||++|.|+.++.|.                           
T Consensus         5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~---s~IG~~s~I~~~~~i~---------------------------   52 (204)
T TIGR03308         5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLR-E---VALGDYSYVMRDCDII---------------------------   52 (204)
T ss_pred             cCCCCeECCCcEEe-ccEeCCCcEECCCcEEe-C---CEECCCCEECCCcEEe---------------------------
Confidence            56778999999995 58999999999999995 4   8899999999999884                           


Q ss_pred             ccccccCCcceEECCCCEECCCceee
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSLR  180 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~  180 (284)
                               ++.||++|.|++++.|.
T Consensus        53 ---------~~~IG~~~~I~~~v~I~   69 (204)
T TIGR03308        53 ---------YTTIGKFCSIAAMVRIN   69 (204)
T ss_pred             ---------eeEECCCCEECCCCEEC
Confidence                     37888999988888774

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.40  E-value=3.6e-12  Score=122.35  Aligned_cols=62  Identities=15%  Similarity=0.225  Sum_probs=49.5

Q ss_pred             eeccEECCCCEECCCcEEcC-------CCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHHH
Q 039842          179 LRSCTIEPECIIGQHSILME-------GSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE  241 (284)
Q Consensus       179 I~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~~  241 (284)
                      +.++.||++|.||+++++..       +++|||+|+||.+++|.++..|++++++. ..+.+.+++++..
T Consensus       367 ~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~-~gs~v~~~v~~~~  435 (456)
T PRK09451        367 LGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIG-AGTTVTRDVAENE  435 (456)
T ss_pred             ccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEEC-CCCEEccccCCCC
Confidence            34578889999999987743       48899999999999999999999998854 4577777776654

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.40  E-value=2.9e-12  Score=114.04  Aligned_cols=103  Identities=19%  Similarity=0.291  Sum_probs=76.8

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcE-EECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKI-TVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS  153 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v-~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (284)
                      +..++.|.+..++.-+..||++++|.++++|..+   + +||++ +|  ++.|                           
T Consensus       150 vp~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~n---AgtIG~~-iI--~g~I---------------------------  196 (319)
T TIGR03535       150 VPTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFN---AGTLGAS-MV--EGRI---------------------------  196 (319)
T ss_pred             CCCccEECCCceeeeccEECCCCEEcCCCEEccC---ceEecCc-eE--EEEE---------------------------
Confidence            3455666666666666666666666666666433   3 45553 44  2333                           


Q ss_pred             CccccccCCcceEECCCCEECCCceeec---------cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842          154 NSLYIAWLPAETSIERFVTIGAYCSLRS---------CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI  220 (284)
Q Consensus       154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~---------v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I  220 (284)
                              .++++||++|.|+.++.|.+         +.||++|+||++|.|  ++.||++|+|++|++|..++.|
T Consensus       197 --------~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v  262 (319)
T TIGR03535       197 --------SAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKV  262 (319)
T ss_pred             --------ccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEE
Confidence                    23589999999999999643         899999999999999  8999999999999999977766

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.39  E-value=4.5e-12  Score=121.31  Aligned_cols=151  Identities=17%  Similarity=0.221  Sum_probs=86.0

Q ss_pred             EEcCC-cEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccc----ccCCCCC
Q 039842           80 YVAPN-VVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ----MSCPRSN  154 (284)
Q Consensus        80 ~I~~~-a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~----~~~~~~~  154 (284)
                      .++|+ +.|+++++||+++.|++++.|.++   +.||++|.|+++|.|...      .+|.++.+....    .......
T Consensus       244 ~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~---~~ig~~~~I~~~~~i~~s------~Ig~~~~I~~~~v~~sii~~~~~  314 (448)
T PRK14357        244 ILDPNTTYIHYDVEIGMDTIIYPMTFIEGK---TRIGEDCEIGPMTRIVDC------EIGNNVKIIRSECEKSVIEDDVS  314 (448)
T ss_pred             EeCCCcEEEccceEECCCcEEcCCcEEEee---eEECCCcEECCCceeccc------EECCCCEEeeeEEEEEEEeCCcE
Confidence            34554 356666677777777777776544   666666666666654311      122222221000    0000000


Q ss_pred             ccccccCCcceEECCCCEECCCce-----------------eeccEECCCCEECCCcEEc-------CCCEECCCCEEcC
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCS-----------------LRSCTIEPECIIGQHSILM-------EGSMVETHAILEA  210 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~-----------------I~~v~Igd~v~IG~~s~I~-------~gv~Ig~~~~I~a  210 (284)
                      .........+++||++|.||+++.                 +..++||++|+||+++++.       .+++||++++|++
T Consensus       315 ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~  394 (448)
T PRK14357        315 VGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGS  394 (448)
T ss_pred             ECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECC
Confidence            000011111244444444444433                 3356888888888888764       3689999999999


Q ss_pred             CCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842          211 GSVLPPGRRIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       211 ~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      ++.|.++..|++++++. .-+.+.+++++.
T Consensus       395 ~~~i~~gv~Ig~~~~i~-ag~~v~~~v~~~  423 (448)
T PRK14357        395 NSSLVAPVRIGKGALIG-AGSVITEDVPPY  423 (448)
T ss_pred             CCEEeCCcEECCCCEEc-CCCEECCcCCCC
Confidence            99999999999998854 446666766654

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=99.38  E-value=2.3e-12  Score=129.23  Aligned_cols=105  Identities=25%  Similarity=0.318  Sum_probs=85.0

Q ss_pred             cceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEEC
Q 039842           89 GQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIE  168 (284)
Q Consensus        89 ~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig  168 (284)
                      -+++||+++.|++ ..+. ..+.++||+||.|+++|.|.+..                                    +.
T Consensus       111 lGa~IG~~v~I~~-~~~~-~~~li~IG~~~~I~~~v~l~~~~------------------------------------~~  152 (695)
T TIGR02353       111 LGAKIGKGVDIGS-LPPV-CTDLLTIGAGTIVRKEVMLLGYR------------------------------------AE  152 (695)
T ss_pred             cCCEECCCCEEEe-eecc-cCCceEECCCCEECCCCEEEccc------------------------------------CC
Confidence            3667888888877 3332 34459999999999999986421                                    11


Q ss_pred             CCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeecc
Q 039842          169 RFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRT  236 (284)
Q Consensus       169 ~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~  236 (284)
                      +     ....+.+++||+||+||++|+|.+|++|||+++|++++.|..+++||+++++.|+|++++.+
T Consensus       153 ~-----~~l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~g~~v~~~~~~~G~PA~~~~~  215 (695)
T TIGR02353       153 R-----GRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQGGQSIPDGERWHGSPAQKTGA  215 (695)
T ss_pred             C-----CceeecCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecCCcccCCCCEEEeeCCEEecc
Confidence            1     11245678999999999999999999999999999999999888999999999999999866

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.38  E-value=8e-12  Score=119.86  Aligned_cols=153  Identities=13%  Similarity=0.202  Sum_probs=91.3

Q ss_pred             cEEcCC-cEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccc----ccCCCC
Q 039842           79 AYVAPN-VVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ----MSCPRS  153 (284)
Q Consensus        79 ~~I~~~-a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~----~~~~~~  153 (284)
                      .+|+|. +.|++++.||+++.|++++.|.++   +.||++|.|++++.|....      +|.++.+....    ....+.
T Consensus       253 ~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~------ig~~~~I~~~~i~~~~ig~~~  323 (458)
T PRK14354        253 TIIDPESTYIDADVEIGSDTVIEPGVVIKGN---TVIGEDCVIGPGSRIVDST------IGDGVTITNSVIEESKVGDNV  323 (458)
T ss_pred             EEeCCCeEEECCCcEECCCCEEeCCeEEecc---eEECCCCEECCCcEEeccE------ECCCCEEEEEEEeCCEECCCc
Confidence            346664 456777778888888888877655   7788888887777775321      22222221100    000010


Q ss_pred             CccccccCCcceEECCCCEECCCcee-----------------eccEECCCCEECCCcEEcC-------CCEECCCCEEc
Q 039842          154 NSLYIAWLPAETSIERFVTIGAYCSL-----------------RSCTIEPECIIGQHSILME-------GSMVETHAILE  209 (284)
Q Consensus       154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I-----------------~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~  209 (284)
                      ..+.......+++||++|.|++++.|                 ..++||++|.||+++.+..       +++||++++++
T Consensus       324 ~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig  403 (458)
T PRK14354        324 TVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIG  403 (458)
T ss_pred             EECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEc
Confidence            11111112223445555555544444                 3456666777777766543       58889999999


Q ss_pred             CCCeeCCCCeeCCCCEEeccCceeeccCCHHH
Q 039842          210 AGSVLPPGRRIPTGELWAGNPARFVRTLTHEE  241 (284)
Q Consensus       210 a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~~  241 (284)
                      .++.|.++..|++++++ |.-+.+.+++++..
T Consensus       404 ~~s~i~~~~~ig~~~~v-~~~~~v~~~~~~~~  434 (458)
T PRK14354        404 CNSNLVAPVTVGDNAYI-AAGSTITKDVPEDA  434 (458)
T ss_pred             cCCEEeCCcEECCCCEE-CCCCEECCCCCCCC
Confidence            99999999999999885 45566777777654

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.38  E-value=2.6e-12  Score=122.25  Aligned_cols=152  Identities=13%  Similarity=0.197  Sum_probs=92.3

Q ss_pred             CCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCc
Q 039842           76 AVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNS  155 (284)
Q Consensus        76 ~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (284)
                      .++.++.+++.|.+++.||+++.|++++.|. +   ++||++|.|++ ++|......+...++.++.+.+..       .
T Consensus       251 ~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~---~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~-------i  318 (430)
T PRK14359        251 PETIYIESGVEFEGECELEEGVRILGKSKIE-N---SHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTH-------I  318 (430)
T ss_pred             CCeeEECCCcEEcCceEECCCCEECCCeEEE-e---eEECCCCEEec-cEEeCCEECCCCEECCCcEEeccE-------E
Confidence            4456667777777777777777777777664 4   56666666544 111110000000111111111000       0


Q ss_pred             cccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcC-------CCEECCCCEEcCCCeeCCCCeeCCCCEEec
Q 039842          156 LYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILME-------GSMVETHAILEAGSVLPPGRRIPTGELWAG  228 (284)
Q Consensus       156 ~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G  228 (284)
                      +... .-.+.+| +++.||+.+.|+.++||++|.||.++++..       +++||++|+||+++.|.++..|++++++ |
T Consensus       319 g~~~-~i~~~~~-~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i-~  395 (430)
T PRK14359        319 GNFV-ETKNAKL-NGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLI-A  395 (430)
T ss_pred             cCcE-EEcccEe-ccccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEE-C
Confidence            0000 0001233 455777888889999999999999998864       3899999999999999999999999885 4


Q ss_pred             cCceeeccCCHHHH
Q 039842          229 NPARFVRTLTHEET  242 (284)
Q Consensus       229 ~pa~~~~~~~~~~~  242 (284)
                      ..+.+.+++++...
T Consensus       396 ~g~~v~~~v~~~~~  409 (430)
T PRK14359        396 AGSTVTKDVPKGSL  409 (430)
T ss_pred             CCCEEccccCCCcE
Confidence            55777777766543

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.38  E-value=8.2e-12  Score=119.77  Aligned_cols=161  Identities=15%  Similarity=0.122  Sum_probs=93.4

Q ss_pred             eCCCcEEcCCcE------EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc
Q 039842           75 VAVDAYVAPNVV------LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM  148 (284)
Q Consensus        75 i~~~~~I~~~a~------i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~  148 (284)
                      +++++.|++++.      |.+++.||++|.|+++|.|. +   ++||++|.|++++.|....-.....+|.++.+.....
T Consensus       266 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~---~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~  341 (456)
T PRK14356        266 IGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLR-D---AVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAV  341 (456)
T ss_pred             ECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEE-e---eEECCCCEEeeeEEEcccceecccEECCceEECCCCE
Confidence            444445554444      44566777777777777774 3   6777777777766664332222223333332221110


Q ss_pred             cCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEc-------CCCEECCCCEEcCCCeeCCCCeeC
Q 039842          149 SCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILM-------EGSMVETHAILEAGSVLPPGRRIP  221 (284)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~-------~gv~Ig~~~~I~a~s~V~~~~~I~  221 (284)
                      ...+...+..... .+++|++++.+++.+.+..++||+++.||+++++.       .++.||++++++.++.|.++..|+
T Consensus       342 ig~~~~ig~~~~i-~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig  420 (456)
T PRK14356        342 LEEGARVGNFVEM-KKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIG  420 (456)
T ss_pred             ECCCCEecCCcee-eeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEEC
Confidence            0000000000000 12344555555555555567888888888887642       358999999999999998889999


Q ss_pred             CCCEEeccCceeeccCCHHH
Q 039842          222 TGELWAGNPARFVRTLTHEE  241 (284)
Q Consensus       222 ~~~vv~G~pa~~~~~~~~~~  241 (284)
                      +++++. ..+.+.+++++..
T Consensus       421 ~~~~i~-~~~~v~~~~~~~~  439 (456)
T PRK14356        421 DGALVG-AGSVITKDVPDGS  439 (456)
T ss_pred             CCCEEc-CCCEEeccCCCCc
Confidence            988854 4466667776654

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.37  E-value=7.9e-12  Score=105.15  Aligned_cols=104  Identities=19%  Similarity=0.307  Sum_probs=79.9

Q ss_pred             CEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCEECCC
Q 039842           97 ASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAY  176 (284)
Q Consensus        97 ~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~  176 (284)
                      +.+++.+.+.++   +.||++|.|+++|+|..                                   +++||++|.|+.+
T Consensus        85 ~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----------------------------------~~~ig~~~~i~~~  126 (197)
T cd03360          85 TLIHPSAVVSPS---AVIGEGCVIMAGAVINP-----------------------------------DARIGDNVIINTG  126 (197)
T ss_pred             eEECCCeEECCC---CEECCCCEEcCCCEECC-----------------------------------CCEECCCeEECCC
Confidence            445555555333   56677777777777742                                   3678888888888


Q ss_pred             cee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCH
Q 039842          177 CSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTH  239 (284)
Q Consensus       177 ~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~  239 (284)
                      +.| ++++||++|+|+.++.+.++++||++|+|+.++.|.++..|++++++ |..+.+.+.+++
T Consensus       127 ~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v-~~~~~v~~~~~~  189 (197)
T cd03360         127 AVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAII-GAGAVVTKDVPD  189 (197)
T ss_pred             CEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEE-CCCCEEcCCCCC
Confidence            887 56899999999999999999999999999999999988999998875 677777766554

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.35  E-value=2.2e-11  Score=103.88  Aligned_cols=43  Identities=21%  Similarity=0.463  Sum_probs=30.0

Q ss_pred             ceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          164 ETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                      +++||++|+||.++.|. +++||++|+||++|+|.+.  |.+++++
T Consensus       130 ~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~  173 (192)
T PRK09677        130 AVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS--IPENTVI  173 (192)
T ss_pred             CeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEE
Confidence            47788888888887764 5777777777777777653  4454444

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.35  E-value=1.3e-11  Score=104.78  Aligned_cols=104  Identities=17%  Similarity=0.299  Sum_probs=79.8

Q ss_pred             CEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCEECCC
Q 039842           97 ASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAY  176 (284)
Q Consensus        97 ~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~  176 (284)
                      +.|.+.+.+..+   +.||++|.|+++++|+.                                   +++||++|.|+.+
T Consensus        88 ~~i~~~a~i~~~---~~ig~~~~i~~~~~i~~-----------------------------------~~~ig~~~~i~~~  129 (201)
T TIGR03570        88 TLIHPSAIVSPS---ASIGEGTVIMAGAVINP-----------------------------------DVRIGDNVIINTG  129 (201)
T ss_pred             EEecCCeEECCC---CEECCCCEECCCCEECC-----------------------------------CCEECCCcEECCC
Confidence            445555555322   66777777777777742                                   3678888888888


Q ss_pred             ceee-ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCH
Q 039842          177 CSLR-SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTH  239 (284)
Q Consensus       177 ~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~  239 (284)
                      +.|. +++||++++|+.++.|.++++||++|+|+++++|.+++.|++++++ |.++.+.+++++
T Consensus       130 ~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i-~~~~~v~~~~~~  192 (201)
T TIGR03570       130 AIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIV-GAGAVVTKDIPD  192 (201)
T ss_pred             CEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEE-CCCCEECCcCCC
Confidence            8884 6899999999999999999999999999999999988999998885 666766666554

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.31  E-value=1.5e-11  Score=113.66  Aligned_cols=125  Identities=16%  Similarity=0.260  Sum_probs=84.2

Q ss_pred             cEEcCCcE-EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc-----cCCC
Q 039842           79 AYVAPNVV-LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM-----SCPR  152 (284)
Q Consensus        79 ~~I~~~a~-i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~-----~~~~  152 (284)
                      +.++|... |.+.++||.++.|.++++|.|.   +.||++|.||++|+|....      +|.+..+....+     ....
T Consensus       256 tl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~---t~ig~~v~iGpg~~i~ds~------I~~~a~I~~~S~ie~s~vg~~  326 (460)
T COG1207         256 TLIDPATTYIRGDVEIGRDVVIEPNVILEGN---TVIGDNVVIGPGSVIKDSV------IGDNAVIKAYSVIEGSTVGEG  326 (460)
T ss_pred             EEeCCCeEEEcCcEEECCceEEecCcEEeee---EEECCceEECCCcEEEeeE------EcCCCEEEecceeeccEecCC
Confidence            45566544 6789999999999999999887   8999999999997775432      222222222111     1112


Q ss_pred             CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCe
Q 039842          153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSV  213 (284)
Q Consensus       153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~  213 (284)
                      ...++++++...+.|++++.||..|-++.++||+++..+.-+.|+ ++.||+++=||+|++
T Consensus       327 ~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlG-DA~iG~~~NiGAGtI  386 (460)
T COG1207         327 ATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLG-DAEIGENVNIGAGTI  386 (460)
T ss_pred             cccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeec-cceecCCceeccceE
Confidence            334455555566777777777777777777777777777666663 578888888888754

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.30  E-value=5.2e-11  Score=96.01  Aligned_cols=97  Identities=15%  Similarity=0.131  Sum_probs=63.5

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS  153 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (284)
                      .+++++.|.+.+.+..++.||+++.|.-  .|..   .++||.+|.|+++|.|......                     
T Consensus        15 ~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~---~a~Ighd~~IG~~~~I~~~l~G---------------------   68 (147)
T cd04649          15 YLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISS---GVIVGKGSDVGGGASIMGTLSG---------------------   68 (147)
T ss_pred             EECCCcEECCCCEEccCCEECCCeEECC--cccC---CEEECCCCEECCCCEEEEECCC---------------------
Confidence            3445555555555444555555444431  1112   2667777777777777621110                     


Q ss_pred             CccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEEC
Q 039842          154 NSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVE  203 (284)
Q Consensus       154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig  203 (284)
                            ....++.||++|+||.+++| ++.||++|.||++++|.+++.|-
T Consensus        69 ------~~~~pV~IG~~~~IG~ga~I-gv~IG~~~vIGaGsvV~k~t~i~  111 (147)
T cd04649          69 ------GGNNVISIGKRCLLGANSGI-GISLGDNCIVEAGLYVTAGTKVT  111 (147)
T ss_pred             ------CcccCEEECCCCEECCCCEE-eEEECCCCEECCCCEEeCCeEEE
Confidence                  02235999999999999999 89999999999999998887664

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.30  E-value=5.7e-11  Score=90.92  Aligned_cols=86  Identities=22%  Similarity=0.246  Sum_probs=59.0

Q ss_pred             cceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEEC
Q 039842           89 GQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIE  168 (284)
Q Consensus        89 ~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig  168 (284)
                      +.+.|++++.|++++.|.+.   +.||++|.|++++.|+.                                   +++||
T Consensus        10 g~v~ig~~~~I~~~~~i~g~---v~IG~~~~Ig~~~~I~~-----------------------------------~v~IG   51 (101)
T cd05635          10 GPIYIGKDAVIEPFAVIEGP---VYIGPGSRVKMGARIYG-----------------------------------NTTIG   51 (101)
T ss_pred             CCEEECCCCEECCCCEEeCC---CEECCCCEECCCCEEeC-----------------------------------cCEEC
Confidence            35677777777777777554   77777777777777752                                   36777


Q ss_pred             CCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeC
Q 039842          169 RFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLP  215 (284)
Q Consensus       169 ~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~  215 (284)
                      ++|.||.  .|..+.|++++.|+.++.|+ +++||+++.|++++...
T Consensus        52 ~~~~Ig~--~i~~svi~~~~~i~~~~~lg-~siIg~~v~ig~~~~~~   95 (101)
T cd05635          52 PTCKIGG--EVEDSIIEGYSNKQHDGFLG-HSYLGSWCNLGAGTNNS   95 (101)
T ss_pred             CCCEECC--EECccEEcCCCEecCcCEEe-eeEECCCCEECCCceec
Confidence            7777764  45667777777777777664 67777777777766544

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=99.29  E-value=1.7e-11  Score=122.99  Aligned_cols=102  Identities=23%  Similarity=0.331  Sum_probs=81.5

Q ss_pred             EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceE
Q 039842           87 LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETS  166 (284)
Q Consensus        87 i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~  166 (284)
                      ..-+++||+++.|+....+.  ...++||++|.|+++|+|++...                                   
T Consensus       594 r~lGa~IG~~v~i~~~~~~~--~dlv~IGd~~~I~~~~~i~~h~~-----------------------------------  636 (695)
T TIGR02353       594 RLLGVKIGRGVYIDGTDLTE--RDLVTIGDDSTLNEGSVIQTHLF-----------------------------------  636 (695)
T ss_pred             HHCCCEECCCeEECCeeccC--CCCeEECCCCEECCCCEEEeccc-----------------------------------
Confidence            34566777777777665553  33489999999999999974211                                   


Q ss_pred             ECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCc
Q 039842          167 IERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPA  231 (284)
Q Consensus       167 Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa  231 (284)
                       .+++.     .+.+++||++|+||.+|+|.++++|||+|+|+++++|..+.++|+++++.|+|+
T Consensus       637 -~~~~~-----~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~g~~vp~~s~~~G~Pa  695 (695)
T TIGR02353       637 -EDRVM-----KSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPAHTRWRGNPA  695 (695)
T ss_pred             -ccccc-----ccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcccCCCCEEEeccC
Confidence             11111     346789999999999999999999999999999999998889999999999996

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.27  E-value=7.2e-11  Score=86.47  Aligned_cols=79  Identities=24%  Similarity=0.392  Sum_probs=59.6

Q ss_pred             ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842           93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT  172 (284)
Q Consensus        93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~  172 (284)
                      ||+++.|++++.|. +   ..||++|.|++++.|.                                    +++|++++.
T Consensus         2 ig~~~~I~~~~~i~-~---~~Ig~~~~I~~~~~i~------------------------------------~s~i~~~~~   41 (81)
T cd04652           2 VGENTQVGEKTSIK-R---SVIGANCKIGKRVKIT------------------------------------NCVIMDNVT   41 (81)
T ss_pred             ccCCCEECCCCEEe-C---cEECCCCEECCCCEEe------------------------------------CcEEeCCCE
Confidence            56677777777774 4   6678888888888774                                    367888888


Q ss_pred             ECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCC
Q 039842          173 IGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGS  212 (284)
Q Consensus       173 Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s  212 (284)
                      |++++.+.+++|++++.|+.++.+ .++.|++++.|++++
T Consensus        42 ig~~~~l~~svi~~~~~i~~~~~v-~~~ii~~~~~i~~~~   80 (81)
T cd04652          42 IEDGCTLENCIIGNGAVIGEKCKL-KDCLVGSGYRVEAGT   80 (81)
T ss_pred             ECCCCEEeccEEeCCCEECCCCEE-ccCEECCCcEeCCCC
Confidence            888888888888888888888877 467777777776653

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.26  E-value=7.4e-11  Score=85.50  Aligned_cols=77  Identities=18%  Similarity=0.375  Sum_probs=56.1

Q ss_pred             ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842           93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT  172 (284)
Q Consensus        93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~  172 (284)
                      ||+++.|++++.|. +   ..||++|.|++++.|.                                    ++.|++++.
T Consensus         2 ig~~~~I~~~~~i~-~---s~ig~~~~ig~~~~i~------------------------------------~s~i~~~~~   41 (79)
T cd05787           2 IGRGTSIGEGTTIK-N---SVIGRNCKIGKNVVID------------------------------------NSYIWDDVT   41 (79)
T ss_pred             ccCCCEECCCCEEe-c---cEECCCCEECCCCEEe------------------------------------CcEEeCCCE
Confidence            56777777777774 3   6678888888888774                                    267888888


Q ss_pred             ECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEc
Q 039842          173 IGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILE  209 (284)
Q Consensus       173 Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~  209 (284)
                      |++++.|..+.|++++.|+.++.|.++++|++++.|+
T Consensus        42 i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig   78 (79)
T cd05787          42 IEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG   78 (79)
T ss_pred             ECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeC
Confidence            8888888777777777777777776666666666655

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=2e-11  Score=116.98  Aligned_cols=113  Identities=16%  Similarity=0.232  Sum_probs=73.6

Q ss_pred             CceeCCCcEEc-CCcEEe-cceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccccc
Q 039842           72 VPKVAVDAYVA-PNVVLA-GQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMS  149 (284)
Q Consensus        72 ~~~i~~~~~I~-~~a~i~-~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~  149 (284)
                      +|.+.+..+-+ ....+. .++.-++.+.+...+.+...   +.||.++.||.++.|.                      
T Consensus       295 YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~---~~ig~gT~Ig~g~~I~----------------------  349 (673)
T KOG1461|consen  295 YPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGAN---VVIGAGTKIGSGSKIS----------------------  349 (673)
T ss_pred             ccccccccCCCCceeeecccccccCccceehhhccccce---EEecccccccCCCeee----------------------
Confidence            34444443443 333332 26666777777776766433   7888888888888884                      


Q ss_pred             CCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEE-----cCCCEECCCCEEcCCCeeCCCCeeCCC
Q 039842          150 CPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSIL-----MEGSMVETHAILEAGSVLPPGRRIPTG  223 (284)
Q Consensus       150 ~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I-----~~gv~Ig~~~~I~a~s~V~~~~~I~~~  223 (284)
                                    |++||.+|.||.||.|.++.|++||+||.||.|     +++++|+++|++.+|++++.+..+|++
T Consensus       350 --------------NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~  414 (673)
T KOG1461|consen  350 --------------NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRN  414 (673)
T ss_pred             --------------cceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCC
Confidence                          589999999999999998888888888888654     445555544444444444433344433

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.24  E-value=1.8e-10  Score=88.12  Aligned_cols=32  Identities=16%  Similarity=0.114  Sum_probs=15.9

Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCcEE
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSIL  196 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I  196 (284)
                      ++|++++.|+++++|..++||+++.||+++.+
T Consensus        63 svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~   94 (101)
T cd05635          63 SIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNN   94 (101)
T ss_pred             cEEcCCCEecCcCEEeeeEECCCCEECCCcee
Confidence            44445555555555555555555555555443

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.23  E-value=1.4e-10  Score=84.27  Aligned_cols=77  Identities=13%  Similarity=0.297  Sum_probs=57.0

Q ss_pred             ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842           93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT  172 (284)
Q Consensus        93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~  172 (284)
                      ||+++.|++++.|. +   ..||++|.|++++.|.                                    +++|++++.
T Consensus         2 ig~~~~I~~~~~i~-~---s~ig~~~~Ig~~~~i~------------------------------------~svi~~~~~   41 (79)
T cd03356           2 IGESTVIGENAIIK-N---SVIGDNVRIGDGVTIT------------------------------------NSILMDNVT   41 (79)
T ss_pred             ccCCcEECCCCEEe-C---CEECCCCEECCCCEEe------------------------------------CCEEeCCCE
Confidence            56666666666663 3   5677777777777774                                    267888888


Q ss_pred             ECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEc
Q 039842          173 IGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILE  209 (284)
Q Consensus       173 Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~  209 (284)
                      |++++.+.+++|++++.|+.++.+.+++.|++++.|+
T Consensus        42 i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~   78 (79)
T cd03356          42 IGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVE   78 (79)
T ss_pred             ECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEEC
Confidence            8888888888888888888888777667777777665

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.22  E-value=1.3e-10  Score=90.89  Aligned_cols=54  Identities=17%  Similarity=0.217  Sum_probs=35.3

Q ss_pred             ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842           93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT  172 (284)
Q Consensus        93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~  172 (284)
                      ||+++.|+++++|.++   ++||++|.|++++.|+.                                   +++||++|.
T Consensus         1 ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~-----------------------------------~~~Ig~~~~   42 (119)
T cd03358           1 IGDNCIIGTNVFIEND---VKIGDNVKIQSNVSIYE-----------------------------------GVTIEDDVF   42 (119)
T ss_pred             CCCCCEECCCcEECCC---cEECCCcEECCCcEEeC-----------------------------------CeEECCCcE
Confidence            3566666666666444   66777777777777742                                   367777777


Q ss_pred             ECCCceeeccEE
Q 039842          173 IGAYCSLRSCTI  184 (284)
Q Consensus       173 Ig~~~~I~~v~I  184 (284)
                      |++++.+.+..+
T Consensus        43 I~~~~~i~~~~~   54 (119)
T cd03358          43 IGPNVVFTNDLY   54 (119)
T ss_pred             EcCCeEEecCCC
Confidence            777777755443

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.22  E-value=8.8e-11  Score=110.11  Aligned_cols=95  Identities=21%  Similarity=0.337  Sum_probs=55.9

Q ss_pred             CCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCC
Q 039842           83 PNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLP  162 (284)
Q Consensus        83 ~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  162 (284)
                      +++.|++++.| .++.|+++|.|.+.....+||++|.|+++|.|.                                   
T Consensus       281 ~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~-----------------------------------  324 (380)
T PRK05293        281 PPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVK-----------------------------------  324 (380)
T ss_pred             CCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEE-----------------------------------
Confidence            33333333333 234445555543222235677777777777663                                   


Q ss_pred             cceEECCCCEECCCceeeccEECCCCEECCCcEEcCC----CEECCCCEEcCCCee
Q 039842          163 AETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEG----SMVETHAILEAGSVL  214 (284)
Q Consensus       163 ~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~g----v~Ig~~~~I~a~s~V  214 (284)
                       +++|+++|.|+++|.|.+++|++++.|+.++.+.++    .+||+++.|.+++++
T Consensus       325 -~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~  379 (380)
T PRK05293        325 -DSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTVI  379 (380)
T ss_pred             -CCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence             366777777777777777777777777777777554    445555555555443

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.21  E-value=9.2e-11  Score=104.57  Aligned_cols=92  Identities=15%  Similarity=0.187  Sum_probs=65.0

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      +..++.|++.+.|+.++.|+.+    .+.+|..+   ++||++|.|..+++|+.......                    
T Consensus       138 ~~~gidI~~~a~IG~g~~I~h~----~givIG~~---a~IGdnv~I~~~VtiGg~~~~~~--------------------  190 (273)
T PRK11132        138 VAFQVDIHPAAKIGRGIMLDHA----TGIVIGET---AVIENDVSILQSVTLGGTGKTSG--------------------  190 (273)
T ss_pred             eeeeeEecCcceECCCeEEcCC----CCeEECCC---CEECCCCEEcCCcEEecCcccCC--------------------
Confidence            3445566666665555555543    24455323   78899999999999975432110                    


Q ss_pred             ccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCC
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv  200 (284)
                             ....+||++|+||++|.| .+++||++|.||++++|..++
T Consensus       191 -------~~~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~dV  230 (273)
T PRK11132        191 -------DRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPV  230 (273)
T ss_pred             -------CcCCEECCCcEEcCCCEEcCCCEECCCCEECCCCEECccc
Confidence                   013689999999999998 679999999999999998763

>PRK10502 putative acyl transferase; Provisional

Probab=99.20  E-value=2e-10  Score=97.23  Aligned_cols=56  Identities=18%  Similarity=0.156  Sum_probs=40.8

Q ss_pred             eEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCC
Q 039842           91 VTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERF  170 (284)
Q Consensus        91 v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~  170 (284)
                      +.||+++.|++++.|. ....+.||++|.|++++.|....                                 .++||++
T Consensus        52 a~iG~~~~I~~~a~i~-~~~~~~IG~~~~Ig~~~~I~~~~---------------------------------~v~IG~~   97 (182)
T PRK10502         52 AKIGKGVVIRPSVRIT-YPWKLTIGDYAWIGDDVWLYNLG---------------------------------EITIGAH   97 (182)
T ss_pred             cccCCCcEEcCCEEEe-cCCeEEECCCeEECCCceecccC---------------------------------ceEECCC
Confidence            4567777777777775 23358899999999999886421                                 3788888


Q ss_pred             CEECCCceee
Q 039842          171 VTIGAYCSLR  180 (284)
Q Consensus       171 v~Ig~~~~I~  180 (284)
                      |.|+.+|.|.
T Consensus        98 ~~I~~~~~I~  107 (182)
T PRK10502         98 CVISQKSYLC  107 (182)
T ss_pred             cEECCCeEEE
Confidence            8888887763

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.18  E-value=2e-10  Score=95.33  Aligned_cols=89  Identities=16%  Similarity=0.209  Sum_probs=57.5

Q ss_pred             CcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccc
Q 039842           78 DAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLY  157 (284)
Q Consensus        78 ~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  157 (284)
                      ++.|++++.|++++.|+.+    .+++|..+   ++||++|.|+++|.|+......                        
T Consensus        61 ~~~I~~~~~Ig~~~~i~~~----~g~~Ig~~---~~IG~~~~I~~~v~ig~~~~~~------------------------  109 (162)
T TIGR01172        61 GVDIHPGARIGRGVFIDHG----TGVVIGET---AVIGDDVTIYHGVTLGGTGKEK------------------------  109 (162)
T ss_pred             CeEeCCCCEECCCeEECCC----CeEEECCC---CEECCCCEEcCCCEECCCcccc------------------------
Confidence            4455555444444444322    12444222   5677777777777775431100                        


Q ss_pred             cccCCcceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCC
Q 039842          158 IAWLPAETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       158 ~~~~~~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv  200 (284)
                         .....+||++|+||.++.|. +++|||+|+||++++|.+++
T Consensus       110 ---~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~dv  150 (162)
T TIGR01172       110 ---GKRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKDV  150 (162)
T ss_pred             ---CCcCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCCC
Confidence               01236899999999999985 59999999999999999875

Cysteine biosynthesis

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.18  E-value=2.1e-10  Score=102.78  Aligned_cols=97  Identities=16%  Similarity=0.232  Sum_probs=67.4

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCC-------------CcEEECCCCEECCCCEEecCCCCCccccccee
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDL-------------NKITVGFCSNVQERCVLHAAWNSPYRFVGFVS  141 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~-------------~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~  141 (284)
                      ++.++.|++.++|..++.||++++|.++++|.-+.             ..++||++|.||.+|.|+..            
T Consensus       175 vp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~t------------  242 (341)
T TIGR03536       175 VPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGT------------  242 (341)
T ss_pred             ccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEE------------
Confidence            45666666666666666666666666666653221             12345666666666665321            


Q ss_pred             eeecccccCCCCCccccccCCcc----eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEEC
Q 039842          142 LLIDLQMSCPRSNSLYIAWLPAE----TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVE  203 (284)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~----v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig  203 (284)
                                         +.++    +.||++|+||.++.| ++.||++|+||++++|..+++|-
T Consensus       243 -------------------LsGg~~~~V~IGe~~lIGagA~I-GI~IGd~~iIGAGavVtagTkI~  288 (341)
T TIGR03536       243 -------------------LSGGGNIVISVGEGCLLGANAGI-GIPLGDRCTVEAGLYITAGTKVA  288 (341)
T ss_pred             -------------------EeCCCceeEEECCCcEECCCCEE-eeEECCCCEECCCCEEeCCcEEE
Confidence                               1123    899999999999999 99999999999999998888774

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>PRK10191 putative acyl transferase; Provisional

Probab=99.18  E-value=2.3e-10  Score=93.19  Aligned_cols=87  Identities=15%  Similarity=0.182  Sum_probs=57.5

Q ss_pred             cEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccc
Q 039842           79 AYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYI  158 (284)
Q Consensus        79 ~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  158 (284)
                      ..|++.+.+++++.|+++    .+++|.++   +.||++|.|+++|+|+.....                          
T Consensus        42 ~~I~~~a~Ig~~~~I~~g----~~i~I~~~---~~IGd~~~I~h~v~IG~~~~~--------------------------   88 (146)
T PRK10191         42 YEIQAAATIGRRFTIHHG----YAVVINKN---VVAGDDFTIRHGVTIGNRGAD--------------------------   88 (146)
T ss_pred             cccCCCCEECCCeEECCC----CeEEECCC---cEECCCCEECCCCEECCCCcC--------------------------
Confidence            344554554444445442    13444333   666777777777777532210                          


Q ss_pred             ccCCcceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCC
Q 039842          159 AWLPAETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       159 ~~~~~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv  200 (284)
                        ....++||++|+||.++.+. +++||++++||++++|.+++
T Consensus        89 --~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~dv  129 (146)
T PRK10191         89 --NMACPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDSV  129 (146)
T ss_pred             --CCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCcc
Confidence              11247899999999999995 69999999999999998764

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.18  E-value=3e-10  Score=82.97  Aligned_cols=45  Identities=11%  Similarity=0.116  Sum_probs=34.1

Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEc
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILE  209 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~  209 (284)
                      ++|++++.|++++.+.++++++++.|+.++.+..+..||+++.|+
T Consensus        35 sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~   79 (80)
T cd05824          35 CVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK   79 (80)
T ss_pred             eEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence            567777777777778778888888888877776667777776665

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.16  E-value=2.7e-10  Score=81.84  Aligned_cols=76  Identities=24%  Similarity=0.431  Sum_probs=54.7

Q ss_pred             EECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCC
Q 039842           92 TVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFV  171 (284)
Q Consensus        92 ~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v  171 (284)
                      .||+++.|++++.|.+.   ++||++|.|++++.|......                                    .  
T Consensus         2 ~ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~~------------------------------------~--   40 (78)
T cd00208           2 FIGEGVKIHPKAVIRGP---VVIGDNVNIGPGAVIGAATGP------------------------------------N--   40 (78)
T ss_pred             EECCCeEECCCCEEeCc---EEECCCCEECCCCEEEeccCC------------------------------------C--
Confidence            57788888888888644   999999999999888653210                                    0  


Q ss_pred             EECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCee
Q 039842          172 TIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVL  214 (284)
Q Consensus       172 ~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V  214 (284)
                            ...+++||++|+|+.+++|.++++||++++|++++.|
T Consensus        41 ------~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v   77 (78)
T cd00208          41 ------EKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV   77 (78)
T ss_pred             ------ccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence                  2344677777777777777777777777777777765

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.16  E-value=2e-10  Score=96.13  Aligned_cols=106  Identities=17%  Similarity=0.246  Sum_probs=69.8

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      +--++.|+|.++|+.++.|.-+    -+.+| |+.  .+||++|.|..+++|+.......                +|  
T Consensus        64 ~~~gieIhp~A~IG~g~fIdHg----~GvVI-get--a~IGddv~I~~gVTLGgtg~~~g----------------~R--  118 (194)
T COG1045          64 FLFGIEIHPGAKIGRGLFIDHG----TGVVI-GET--AVIGDDVTIYHGVTLGGTGKESG----------------KR--  118 (194)
T ss_pred             hhcceeeCCCCeECCceEEcCC----ceEEE-cce--eEECCCeEEEcceEecCCCCcCC----------------CC--
Confidence            3445566666665555555432    12333 222  55666666667777765443211                11  


Q ss_pred             ccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL  225 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v  225 (284)
                            +   -+||++|.||+++.| .+.+||||+.||+||+|..++        .++++|.   .||+..+
T Consensus       119 ------h---PtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdV--------P~~~tvv---GvPArii  170 (194)
T COG1045         119 ------H---PTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDV--------PPNATVV---GVPARVI  170 (194)
T ss_pred             ------C---CccCCCeEECCCCEEEcceEECCCCEECCCceEccCC--------CCCceEe---cCcceEe
Confidence                  3   379999999999987 789999999999999999988        6777665   5777655

>PLN02739 serine acetyltransferase

Probab=99.15  E-value=3e-10  Score=103.56  Aligned_cols=37  Identities=14%  Similarity=0.277  Sum_probs=33.5

Q ss_pred             ceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCC
Q 039842          164 ETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv  200 (284)
                      ..+||++|+||++++| .+++||+++.||+|++|..++
T Consensus       257 ~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kDV  294 (355)
T PLN02739        257 HPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKDV  294 (355)
T ss_pred             CcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCCC
Confidence            3789999999999998 679999999999999998764

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.15  E-value=5.5e-10  Score=81.73  Aligned_cols=79  Identities=13%  Similarity=0.257  Sum_probs=68.3

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      +++++.|++++.|. ++.||+++.|++++.|. +   ..|+++|.|++++.|.                           
T Consensus         2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~-~---s~i~~~~~ig~~~~l~---------------------------   49 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKIT-N---CVIMDNVTIEDGCTLE---------------------------   49 (81)
T ss_pred             ccCCCEECCCCEEe-CcEECCCCEECCCCEEe-C---cEEeCCCEECCCCEEe---------------------------
Confidence            57888999999886 68899999999999995 5   7799999999999984                           


Q ss_pred             ccccccCCcceEECCCCEECCCceeeccEECCCCEECCCc
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHS  194 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s  194 (284)
                               +++|++++.|++++.+.+++||+++.|++++
T Consensus        50 ---------~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~   80 (81)
T cd04652          50 ---------NCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT   80 (81)
T ss_pred             ---------ccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence                     3789999999999999888888888887764

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.14  E-value=4.4e-10  Score=81.36  Aligned_cols=75  Identities=23%  Similarity=0.379  Sum_probs=61.5

Q ss_pred             ECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCC
Q 039842          114 VGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQH  193 (284)
Q Consensus       114 IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~  193 (284)
                      ||++|.|++++.|.                                    ++.|++++.|++++.|.++.|++++.|+.+
T Consensus         2 ig~~~~I~~~~~i~------------------------------------~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~   45 (79)
T cd05787           2 IGRGTSIGEGTTIK------------------------------------NSVIGRNCKIGKNVVIDNSYIWDDVTIEDG   45 (79)
T ss_pred             ccCCCEECCCCEEe------------------------------------ccEECCCCEECCCCEEeCcEEeCCCEECCC
Confidence            68888899988884                                    268999999999999999999999999999


Q ss_pred             cEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842          194 SILMEGSMVETHAILEAGSVLPPGRRIPTGEL  225 (284)
Q Consensus       194 s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v  225 (284)
                      +.|. +++|++++.|+.++.+.+++.+.+++.
T Consensus        46 ~~i~-~~~i~~~~~i~~~~~i~~~~~v~~~~~   76 (79)
T cd05787          46 CTIH-HSIVADGAVIGKGCTIPPGSLISFGVV   76 (79)
T ss_pred             CEEe-CcEEcCCCEECCCCEECCCCEEeCCcE
Confidence            8885 677888888887777776666666654

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=5e-10  Score=104.41  Aligned_cols=96  Identities=20%  Similarity=0.342  Sum_probs=76.8

Q ss_pred             cEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcc
Q 039842           85 VVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAE  164 (284)
Q Consensus        85 a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (284)
                      +.+.+++.||++|.|++++.|.++   ++||++|.|++++.|.                                    +
T Consensus       256 ~~i~gp~~ig~~~~i~~~~~i~~~---~~ig~~~~I~~~~~i~------------------------------------~  296 (358)
T COG1208         256 AYIIGPVVIGPGAKIGPGALIGPY---TVIGEGVTIGNGVEIK------------------------------------N  296 (358)
T ss_pred             ceEeCCEEECCCCEECCCCEECCC---cEECCCCEECCCcEEE------------------------------------e
Confidence            778888889999999999888655   8889999999998884                                    4


Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW  226 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv  226 (284)
                      ++|+++|.|++++.+.+++||++|.||++. .     ||+ +.++.++.+.+++.+++++++
T Consensus       297 Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~-~-----i~d-~~~g~~~~i~~g~~~~~~~~~  351 (358)
T COG1208         297 SIIMDNVVIGHGSYIGDSIIGENCKIGASL-I-----IGD-VVIGINSEILPGVVVGPGSVV  351 (358)
T ss_pred             eEEEcCCEECCCCEEeeeEEcCCcEECCce-e-----ecc-eEecCceEEcCceEeCCCccc
Confidence            899999999999999999999999999933 2     666 666666666655555555443

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.13  E-value=4.2e-10  Score=100.39  Aligned_cols=39  Identities=21%  Similarity=0.362  Sum_probs=36.0

Q ss_pred             ceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEEC
Q 039842          164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVE  203 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig  203 (284)
                      +++||++|+||.+|.| ++.||++|+||++++|..++.|-
T Consensus       225 pV~IGe~~~IGagA~I-GI~IGd~~VVGAGaVVtkgT~v~  263 (319)
T TIGR03535       225 VISIGERCLLGANSGL-GISLGDDCVVEAGLYVTAGTKVT  263 (319)
T ss_pred             cEEECCCcEECCCCEE-CeEECCCCEECCCCEEeCCeEEE
Confidence            4999999999999999 99999999999999999888764

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.10  E-value=1.1e-09  Score=93.98  Aligned_cols=102  Identities=15%  Similarity=0.111  Sum_probs=63.0

Q ss_pred             EECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCC
Q 039842           92 TVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFV  171 (284)
Q Consensus        92 ~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v  171 (284)
                      .+|++++|.+.+.+. .+..+.||+++.|+.+|+|...                                 .+++||++|
T Consensus        57 ~ig~~~~I~~~~~~~-~g~ni~IG~~v~In~~~~I~d~---------------------------------~~I~IGd~v  102 (203)
T PRK09527         57 TVGENAWVEPPVYFS-YGSNIHIGRNFYANFNLTIVDD---------------------------------YTVTIGDNV  102 (203)
T ss_pred             hcCCCcEEcCCEEEe-eCCCcEEcCCcEECCCcEEecC---------------------------------CCEEECCCC
Confidence            478888888888873 2334899999999999988643                                 248999999


Q ss_pred             EECCCceeecc----E---ECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842          172 TIGAYCSLRSC----T---IEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA  227 (284)
Q Consensus       172 ~Ig~~~~I~~v----~---Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~  227 (284)
                      .|+++|.|...    .   -.++...+..++|+++|.||.+++|.++++|++++.|++++++.
T Consensus       103 ~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~  165 (203)
T PRK09527        103 LIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVT  165 (203)
T ss_pred             EECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEc
Confidence            99999988531    0   01122233334444444444444444444444444555555544

>PLN02694 serine O-acetyltransferase

Probab=99.09  E-value=5.2e-10  Score=100.02  Aligned_cols=88  Identities=16%  Similarity=0.181  Sum_probs=58.6

Q ss_pred             cEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccc
Q 039842           79 AYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYI  158 (284)
Q Consensus        79 ~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  158 (284)
                      +.|+++++|+.++.|...    .+++|. +.  +.||++|.|..+++++......                         
T Consensus       161 vdI~p~A~IG~gv~Idh~----tGVVIG-e~--a~IGdnv~I~~~VtLGg~g~~~-------------------------  208 (294)
T PLN02694        161 VDIHPAAKIGKGILFDHA----TGVVIG-ET--AVIGNNVSILHHVTLGGTGKAC-------------------------  208 (294)
T ss_pred             EEeCCcceecCCEEEeCC----CCeEEC-CC--cEECCCCEEeecceeCCccccc-------------------------
Confidence            445555555555544431    134442 22  5666777777777775432100                         


Q ss_pred             ccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCC
Q 039842          159 AWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       159 ~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv  200 (284)
                        ...+++||++|+||.++.| .+++||++|.||++++|..++
T Consensus       209 --~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~kdV  249 (294)
T PLN02694        209 --GDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLIDV  249 (294)
T ss_pred             --CCCccEECCCeEECCeeEECCCCEECCCCEECCCCEECCcC
Confidence              1124799999999999999 789999999999999998764

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.07  E-value=1.5e-09  Score=78.85  Aligned_cols=60  Identities=17%  Similarity=0.233  Sum_probs=49.9

Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL  225 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v  225 (284)
                      +.||++|+|++++.++.+.|++++.|+.++.|. ++.|++++.|++++.+..+..+++++.
T Consensus        17 s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~-~svv~~~~~i~~~~~i~~~~~ig~~~~   76 (79)
T cd03356          17 SVIGDNVRIGDGVTITNSILMDNVTIGANSVIV-DSIIGDNAVIGENVRVVNLCIIGDDVV   76 (79)
T ss_pred             CEECCCCEECCCCEEeCCEEeCCCEECCCCEEE-CCEECCCCEECCCCEEcCCeEECCCeE
Confidence            789999999999999999999999999999884 677888888888877776566666554

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.06  E-value=2.2e-09  Score=78.36  Aligned_cols=77  Identities=13%  Similarity=0.199  Sum_probs=63.2

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      ++++++|++++.|++++.|+++|.|++++.|. +   ..|++++.|++++.|.                           
T Consensus         2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~-~---sii~~~~~i~~~~~i~---------------------------   50 (80)
T cd05824           2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQ-R---CVILSNSTVRDHSWVK---------------------------   50 (80)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCcEEe-e---eEEcCCCEECCCCEEe---------------------------
Confidence            46778888888888888899999999999885 4   7788999999998884                           


Q ss_pred             ccccccCCcceEECCCCEECCCceeec-cEECCCCEEC
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSLRS-CTIEPECIIG  191 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~-v~Igd~v~IG  191 (284)
                               ++++++++.|++++.+.. ..|||++.|+
T Consensus        51 ---------~sii~~~~~v~~~~~~~~~~~ig~~~~i~   79 (80)
T cd05824          51 ---------SSIVGWNSTVGRWTRLENVTVLGDDVTIK   79 (80)
T ss_pred             ---------CCEEeCCCEECCCcEEecCEEECCceEEC
Confidence                     378899999998888866 6777777665

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.06  E-value=2.4e-09  Score=76.86  Aligned_cols=34  Identities=24%  Similarity=0.491  Sum_probs=28.3

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEec
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRG  107 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g  107 (284)
                      .+++++.|++++.|.+++.||+++.|++++.|.+
T Consensus         2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~   35 (78)
T cd00208           2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGA   35 (78)
T ss_pred             EECCCeEECCCCEEeCcEEECCCCEECCCCEEEe
Confidence            4678888888888888888888888888888863

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.05  E-value=2.8e-09  Score=81.95  Aligned_cols=50  Identities=18%  Similarity=0.418  Sum_probs=28.6

Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeC
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLP  215 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~  215 (284)
                      ++|++++.|++++.|..+.|++++.||.++.+ .++.||+++.|++++.+.
T Consensus        29 svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i-~~siig~~~~Ig~~~~v~   78 (104)
T cd04651          29 SVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVI-RRAIIDKNVVIPDGVVIG   78 (104)
T ss_pred             CEEeCCCEECCCCEEEEeEEcCCCEECCCCEE-EeEEECCCCEECCCCEEC
Confidence            45555555555555555556666666655555 345555555555555554

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.05  E-value=2.4e-09  Score=89.47  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=21.9

Q ss_pred             ceEECCCCEECCCcee-eccEECCCCEECCCcEEcCC
Q 039842          164 ETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEG  199 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~g  199 (284)
                      +++||++|+||.+++| .+++||++|+||++|+|.++
T Consensus       118 ~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~  154 (169)
T cd03357         118 PITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD  154 (169)
T ss_pred             CcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc
Confidence            3666666666666665 35666666666666666553

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PLN02357 serine acetyltransferase

Probab=99.04  E-value=1.8e-09  Score=99.21  Aligned_cols=88  Identities=18%  Similarity=0.205  Sum_probs=59.1

Q ss_pred             cEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccc
Q 039842           79 AYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYI  158 (284)
Q Consensus        79 ~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  158 (284)
                      +.|+++++|+.++.|...    .+++|..+   ++||++|.|..+|+|+.......                        
T Consensus       227 vdI~p~a~IG~Gv~Idh~----~giVIGe~---avIGdnV~I~~gVtIGg~g~~~g------------------------  275 (360)
T PLN02357        227 VDIHPGAKIGQGILLDHA----TGVVIGET---AVVGNNVSILHNVTLGGTGKQSG------------------------  275 (360)
T ss_pred             eeeCCCCEECCCeEECCC----CceEECCC---CEECCCCEEeCCceecCccccCC------------------------
Confidence            455555554444444431    13444222   66778888888888865322100                        


Q ss_pred             ccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCC
Q 039842          159 AWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       159 ~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv  200 (284)
                         ...++||++|+||+++.| .+++||+++.||++++|.+++
T Consensus       276 ---~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~dV  315 (360)
T PLN02357        276 ---DRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDV  315 (360)
T ss_pred             ---ccCceeCCCeEECCceEEECCeEECCCCEECCCCEECccc
Confidence               124799999999999888 689999999999999998764

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.03  E-value=3.1e-09  Score=98.77  Aligned_cols=106  Identities=21%  Similarity=0.253  Sum_probs=73.1

Q ss_pred             EcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccccc
Q 039842           81 VAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAW  160 (284)
Q Consensus        81 I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  160 (284)
                      +.+.+.+.+.+.||++|.| +++.|.+.   +.||++|.|+ +++|.                                 
T Consensus       245 i~~~~~i~~~~~i~~~~~i-~~~~i~~~---~~Ig~~~~I~-~~~i~---------------------------------  286 (353)
T TIGR01208       245 VDDESKIRGRVVVGEGAKI-VNSVIRGP---AVIGEDCIIE-NSYIG---------------------------------  286 (353)
T ss_pred             cCCCCEEcCCEEECCCCEE-eCCEEECC---cEECCCCEEc-CcEEC---------------------------------
Confidence            5666777778888888888 67777654   7788888876 44443                                 


Q ss_pred             CCcceEECCCCEECCCceeeccEECCCCEECCCc-EEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCcee
Q 039842          161 LPAETSIERFVTIGAYCSLRSCTIEPECIIGQHS-ILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARF  233 (284)
Q Consensus       161 ~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s-~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~  233 (284)
                        .+++||++|.|+ +|.|.+++|++++.|+.++ .+ .+++|++++.|+.++.+..     ....+.|.++.+
T Consensus       287 --~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~-~~~ii~~~~~i~~~~~~~~-----~~~~~~g~~~~~  351 (353)
T TIGR01208       287 --PYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARI-VDSVIGKKVRIKGNRRRPG-----DLRLTIGDYSQV  351 (353)
T ss_pred             --CCCEECCCCEEe-eeEEEeeEEcCCCEEcCCccee-ecCEEcCCCEECCCccccc-----ccceEEcCCcee
Confidence              147788888887 6777788888888887774 44 5677777777776655551     123556776654

Alternate name: dTDP-D-glucose synthase

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.03  E-value=2.6e-09  Score=102.16  Aligned_cols=114  Identities=16%  Similarity=0.264  Sum_probs=69.1

Q ss_pred             CcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecc-cccCCCCCccccccCC
Q 039842           84 NVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDL-QMSCPRSNSLYIAWLP  162 (284)
Q Consensus        84 ~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~  162 (284)
                      ++.+.+ +.|+++|.|+ ++.|. +   .+||++|.|+++|+|....-            +.. .+-..         ..
T Consensus       310 ~~~i~~-s~I~~~~~I~-~~~I~-~---svI~~~~~Ig~~~~I~~sii------------~g~~~~~~~---------~~  362 (436)
T PLN02241        310 DCRITD-SIISHGCFLR-ECKIE-H---SVVGLRSRIGEGVEIEDTVM------------MGADYYETE---------EE  362 (436)
T ss_pred             CCeEEE-eEEcCCcEEc-CeEEE-e---eEEcCCCEECCCCEEEEeEE------------ECCCccccc---------cc
Confidence            444444 7788888888 88884 4   68899999999888864211            000 00000         00


Q ss_pred             cceEECCC---CEECCCceeeccEECCCCEECCCcEEc------CCCEECCCCEEcCC-CeeCCCCeeCCCC
Q 039842          163 AETSIERF---VTIGAYCSLRSCTIEPECIIGQHSILM------EGSMVETHAILEAG-SVLPPGRRIPTGE  224 (284)
Q Consensus       163 ~~v~Ig~~---v~Ig~~~~I~~v~Igd~v~IG~~s~I~------~gv~Ig~~~~I~a~-s~V~~~~~I~~~~  224 (284)
                      ...+...+   +.||++|.+.+++|+++|+||.++.|.      +..++|++|+|+.+ ++|+++..+++++
T Consensus       363 ~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  434 (436)
T PLN02241        363 IASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGT  434 (436)
T ss_pred             cccccccCCcceEECCCCEEcceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCC
Confidence            00111123   268888888888888888888888876      34555666666666 3555555555544

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.01  E-value=2e-09  Score=94.20  Aligned_cols=105  Identities=16%  Similarity=0.228  Sum_probs=71.0

Q ss_pred             ceeCCCcEEcCCcEEecceEECC------CCEECCCCEEecC---CCcEEECCCCEECCCCEEecCCCCCcccccceeee
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCD------GASVWPGSVLRGD---LNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLL  143 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~------~~~I~~~~~I~g~---~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~  143 (284)
                      .+|.|++.|-.++.|+.++++-.      ++.++.++.|.+.   ++.++||+||.|+-++.|..--- +.         
T Consensus       109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLe-p~---------  178 (271)
T COG2171         109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLE-PL---------  178 (271)
T ss_pred             eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEec-CC---------
Confidence            35555555555555555554444      4555555555443   11266777777777777753211 11         


Q ss_pred             ecccccCCCCCccccccCCcceEECCCCEECCCc-eeeccEECCCCEECCCcEEcCCCEECC
Q 039842          144 IDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYC-SLRSCTIEPECIIGQHSILMEGSMVET  204 (284)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~-~I~~v~Igd~v~IG~~s~I~~gv~Ig~  204 (284)
                                       ...+++||++|.||+|+ .+.++.+||+|+|++|++|..++.|.+
T Consensus       179 -----------------~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki~~  223 (271)
T COG2171         179 -----------------QANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIYD  223 (271)
T ss_pred             -----------------CCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcceEE
Confidence                             22469999999999998 669999999999999999999998875

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.00  E-value=5.9e-09  Score=79.48  Aligned_cols=43  Identities=23%  Similarity=0.341  Sum_probs=35.1

Q ss_pred             ceEECCCCEECCCceeec-cEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          164 ETSIERFVTIGAYCSLRS-CTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I~~-v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                      +++||++++|+.++.+.. ++||++|+|++++.|.++  +.+++++
T Consensus        54 ~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~--~~~~~~~   97 (101)
T cd03354          54 HPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTKD--VPANSTV   97 (101)
T ss_pred             CCEECCCcEEcCCCEEECcCEECCCCEECCCCEECcc--cCCCCEE
Confidence            489999999999999865 899999999999999864  4444443

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.99  E-value=6.5e-09  Score=79.78  Aligned_cols=97  Identities=19%  Similarity=0.267  Sum_probs=68.9

Q ss_pred             eeCCCcEEcCCcEEec--ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCC
Q 039842           74 KVAVDAYVAPNVVLAG--QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCP  151 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~--~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~  151 (284)
                      .++++++|+++++|.+  ++.||++|.|++++.|...       .+..+..++.+....                     
T Consensus         3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~-------~~~~~~~~~~~~~~~---------------------   54 (109)
T cd04647           3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH-------NHDIDDPERPIEQGV---------------------   54 (109)
T ss_pred             EECCCcEECCCCEEecCCceEECCCCEECCCCEEECC-------CCCCCcccccccccc---------------------
Confidence            5788999999999988  8999999999999999633       223333332221110                     


Q ss_pred             CCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEc
Q 039842          152 RSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILE  209 (284)
Q Consensus       152 ~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~  209 (284)
                               ...+++||++++|+.++.+ .++.||++|+|+.++.|..  .+.++.+++
T Consensus        55 ---------~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~--~i~~~~i~~  102 (109)
T cd04647          55 ---------TSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTK--DVPPNSIVA  102 (109)
T ss_pred             ---------ccCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEee--ECCCCCEEE
Confidence                     1124889999999999988 6788888888888888863  455555543

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=98.97  E-value=7.7e-09  Score=79.46  Aligned_cols=80  Identities=16%  Similarity=0.234  Sum_probs=66.5

Q ss_pred             cEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccc
Q 039842           79 AYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYI  158 (284)
Q Consensus        79 ~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  158 (284)
                      ++|+++++| .++.||++|.|+ ++.|. +   ..|+++|.|++++.|.                               
T Consensus         2 ~~i~~~~~i-~~s~Ig~~~~I~-~~~I~-~---svi~~~~~Ig~~~~I~-------------------------------   44 (104)
T cd04651           2 PYIGRRGEV-KNSLVSEGCIIS-GGTVE-N---SVLFRGVRVGSGSVVE-------------------------------   44 (104)
T ss_pred             ceecCCCEE-EeEEECCCCEEc-CeEEE-e---CEEeCCCEECCCCEEE-------------------------------
Confidence            577788888 467899999998 88885 4   7799999999999984                               


Q ss_pred             ccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCC
Q 039842          159 AWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       159 ~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv  200 (284)
                           ++.|++++.||.++.+.++.||+++.|+.++.+.+..
T Consensus        45 -----~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~~   81 (104)
T cd04651          45 -----DSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGDP   81 (104)
T ss_pred             -----EeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCCc
Confidence                 4789999999999999888888888888888776653

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=98.96  E-value=9.1e-09  Score=79.40  Aligned_cols=76  Identities=20%  Similarity=0.163  Sum_probs=48.0

Q ss_pred             cEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCEECCCceeec----cEECC
Q 039842          111 KITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRS----CTIEP  186 (284)
Q Consensus       111 ~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~----v~Igd  186 (284)
                      .+.||++|.|+++++|...                                 ..++||++|.|++++.|..    ....+
T Consensus         3 ~i~iG~~~~I~~~~~i~~~---------------------------------~~i~IG~~~~I~~~~~I~~~~h~~~~~~   49 (107)
T cd05825           3 NLTIGDNSWIGEGVWIYNL---------------------------------APVTIGSDACISQGAYLCTGSHDYRSPA   49 (107)
T ss_pred             eEEECCCCEECCCCEEeeC---------------------------------CceEECCCCEECCCeEeecCCCCCCcCc
Confidence            3889999999999999642                                 1389999999999998842    22222


Q ss_pred             CCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842          187 ECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL  225 (284)
Q Consensus       187 ~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v  225 (284)
                      ...+      ...+.||++|+|++++.|.+++.|+++++
T Consensus        50 ~~~~------~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~   82 (107)
T cd05825          50 FPLI------TAPIVIGDGAWVAAEAFVGPGVTIGEGAV   82 (107)
T ss_pred             ccee------cCCEEECCCCEECCCCEECCCCEECCCCE
Confidence            3333      34445555555555555555555555544

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=98.94  E-value=1.2e-08  Score=86.34  Aligned_cols=36  Identities=17%  Similarity=0.295  Sum_probs=19.8

Q ss_pred             ceEECCCCEECCCceee-ccEECCCCEECCCcEEcCC
Q 039842          164 ETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEG  199 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~g  199 (284)
                      +++||++|+||.+|+|. +++||++|+||++++|..+
T Consensus       129 ~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d  165 (183)
T PRK10092        129 PVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD  165 (183)
T ss_pred             CeEECCCcEECCCCEECCCCEECCCCEECCCCEEccc
Confidence            35555555555555552 4555555555555555443

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.91  E-value=9.5e-09  Score=98.11  Aligned_cols=95  Identities=18%  Similarity=0.360  Sum_probs=69.7

Q ss_pred             ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEEC-
Q 039842           90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIE-  168 (284)
Q Consensus        90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig-  168 (284)
                      ++.||++|.| +++.|. +   .+||++|.|+++|+|..                                    ++|+ 
T Consensus       308 ~~~ig~~~~i-~~~~i~-~---svi~~~~~Ig~~~~i~~------------------------------------svi~~  346 (429)
T PRK02862        308 ESIIAEGCII-KNCSIH-H---SVLGIRSRIESGCTIED------------------------------------TLVMG  346 (429)
T ss_pred             eCEECCCCEE-CCcEEE-E---EEEeCCcEECCCCEEEe------------------------------------eEEec
Confidence            4678888888 778774 4   78999999999998853                                    3333 


Q ss_pred             ------------------CCCEECCCceeeccEECCCCEECCCcEEcCCCEECC------CCEEcCC-CeeCCCCeeCCC
Q 039842          169 ------------------RFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVET------HAILEAG-SVLPPGRRIPTG  223 (284)
Q Consensus       169 ------------------~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~------~~~I~a~-s~V~~~~~I~~~  223 (284)
                                        .++.||++|.|..++|+++|.||.++.|.++..+..      +++|+.| ++|+.++.++++
T Consensus       347 ~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (429)
T PRK02862        347 ADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDG  426 (429)
T ss_pred             CcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCC
Confidence                              368899999999999999999999999865554333      5666665 556666666655


Q ss_pred             CE
Q 039842          224 EL  225 (284)
Q Consensus       224 ~v  225 (284)
                      ++
T Consensus       427 ~~  428 (429)
T PRK02862        427 TV  428 (429)
T ss_pred             CC
Confidence            43

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=7.7e-09  Score=94.47  Aligned_cols=87  Identities=17%  Similarity=0.260  Sum_probs=66.5

Q ss_pred             cEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcc
Q 039842           85 VVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAE  164 (284)
Q Consensus        85 a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (284)
                      +.++....++++|.|++++.|. .   .+||.+|.||+.++|-                                    +
T Consensus       329 ~l~g~d~iv~~~t~i~~~s~ik-~---SviG~nC~Ig~~~~v~------------------------------------n  368 (433)
T KOG1462|consen  329 ALVGADSIVGDNTQIGENSNIK-R---SVIGSNCDIGERVKVA------------------------------------N  368 (433)
T ss_pred             eccchhhccCCCceecccceee-e---eeecCCccccCCcEEE------------------------------------e
Confidence            3445567777777777777774 3   7789999999988883                                    4


Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCC
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGS  212 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s  212 (284)
                      +.|.++|.||++|.|.+|+||+++.||++|.+ .+|.||.+=+|.|..
T Consensus       369 Silm~nV~vg~G~~IensIIg~gA~Ig~gs~L-~nC~Ig~~yvVeak~  415 (433)
T KOG1462|consen  369 SILMDNVVVGDGVNIENSIIGMGAQIGSGSKL-KNCIIGPGYVVEAKG  415 (433)
T ss_pred             eEeecCcEecCCcceecceecccceecCCCee-eeeEecCCcEEcccc
Confidence            78889999999999999999999999999888 346666665555443

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.86  E-value=2e-08  Score=94.16  Aligned_cols=53  Identities=19%  Similarity=0.421  Sum_probs=45.1

Q ss_pred             ceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCC
Q 039842          164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPG  217 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~  217 (284)
                      +++||++|.||++|.|.+++|+++|.||.+|.| .+++|++++.|++++.+.++
T Consensus       308 ~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i-~~~ii~~~~~i~~~~~i~~~  360 (380)
T PRK05293        308 HSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVI-ERAIIGENAVIGDGVIIGGG  360 (380)
T ss_pred             ceEEcCCCEECCCCEEECCEEeCCCEECCCeEE-eEEEECCCCEECCCCEEcCC
Confidence            489999999999999999999999999999987 44777777777777777644

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=2.5e-08  Score=93.03  Aligned_cols=94  Identities=17%  Similarity=0.303  Sum_probs=61.8

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      +++++.|++++.|++++.||++|.|+.++.|. +   ..|.++|.|++++.|.                           
T Consensus       264 ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~---Sii~~~~~i~~~~~i~---------------------------  312 (358)
T COG1208         264 IGPGAKIGPGALIGPYTVIGEGVTIGNGVEIK-N---SIIMDNVVIGHGSYIG---------------------------  312 (358)
T ss_pred             ECCCCEECCCCEECCCcEECCCCEECCCcEEE-e---eEEEcCCEECCCCEEe---------------------------
Confidence            44455555555555555555555555555553 3   6677777777777774                           


Q ss_pred             ccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCee
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVL  214 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V  214 (284)
                               +++||++|.||+ +. .   ||| +.+|.++.+.++++++.++++..+..+
T Consensus       313 ---------~sIi~~~~~ig~-~~-~---i~d-~~~g~~~~i~~g~~~~~~~~~~~~~~~  357 (358)
T COG1208         313 ---------DSIIGENCKIGA-SL-I---IGD-VVIGINSEILPGVVVGPGSVVESGEIE  357 (358)
T ss_pred             ---------eeEEcCCcEECC-ce-e---ecc-eEecCceEEcCceEeCCCccccCcccc
Confidence                     478888888888 22 2   888 888888888888888777777766543

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.84  E-value=4.1e-08  Score=79.99  Aligned_cols=110  Identities=15%  Similarity=0.061  Sum_probs=66.6

Q ss_pred             eeCCCcEEcC-CcEEec-ceEECCCCEECCCCEEecC-CCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccC
Q 039842           74 KVAVDAYVAP-NVVLAG-QVTVCDGASVWPGSVLRGD-LNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSC  150 (284)
Q Consensus        74 ~i~~~~~I~~-~a~i~~-~v~IG~~~~I~~~~~I~g~-~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~  150 (284)
                      .+++.++|++ .+.+.. .++||++|.|++++.|... .++.   .+....+  ....... .         .       
T Consensus         3 ~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~---~~~~~~p--~~~~~~~-~---------~-------   60 (145)
T cd03349           3 SVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPT---DWVSTYP--FYIFGGE-W---------E-------   60 (145)
T ss_pred             EEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCC---CCccccc--eEeeccc-c---------c-------
Confidence            4778889988 556654 8999999999999998632 1111   0000000  0000000 0         0       


Q ss_pred             CCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          151 PRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       151 ~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                       +...........+++||++|+||.+|.| .+++||++|+||++|+|.++  +.+++++
T Consensus        61 -~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~  116 (145)
T cd03349          61 -DDAKFDDWPSKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIV  116 (145)
T ss_pred             -cccccccccccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEE
Confidence             0000000012246999999999999999 67999999999999999875  3444444

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=98.84  E-value=2.9e-08  Score=92.25  Aligned_cols=100  Identities=10%  Similarity=0.076  Sum_probs=73.3

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS  153 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (284)
                      .+.+.++|++++.| .++.|++.+.|+++|.|. +   .+|+++|.|+++|+|+. +.                      
T Consensus       250 ~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~-~---~~i~~~~~Ig~~~~i~~-~~----------------------  301 (353)
T TIGR01208       250 KIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIE-N---SYIGPYTSIGEGVVIRD-AE----------------------  301 (353)
T ss_pred             EEcCCEEECCCCEE-eCCEEECCcEECCCCEEc-C---cEECCCCEECCCCEEee-eE----------------------
Confidence            45556777777777 566676777888888884 4   57888888888888852 11                      


Q ss_pred             CccccccCCcceEECCCCEECCC-ceeeccEECCCCEECCCcEEcC--CCEECCCCEEc
Q 039842          154 NSLYIAWLPAETSIERFVTIGAY-CSLRSCTIEPECIIGQHSILME--GSMVETHAILE  209 (284)
Q Consensus       154 ~~~~~~~~~~~v~Ig~~v~Ig~~-~~I~~v~Igd~v~IG~~s~I~~--gv~Ig~~~~I~  209 (284)
                             . .+++|++++.|+.+ +.+.+++||+++.|+.++.+..  +..+|+.++|+
T Consensus       302 -------i-~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~  352 (353)
T TIGR01208       302 -------V-EHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE  352 (353)
T ss_pred             -------E-EeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCceec
Confidence                   1 25889999999888 4888899999999999888863  45677776654

Alternate name: dTDP-D-glucose synthase

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=98.83  E-value=2.5e-08  Score=95.36  Aligned_cols=51  Identities=14%  Similarity=0.229  Sum_probs=35.8

Q ss_pred             ceEECCCCEECCCceee-ccEECCCCEECCCcEEcCC-CEECCCCEEcCCCee
Q 039842          164 ETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEG-SMVETHAILEAGSVL  214 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~g-v~Ig~~~~I~a~s~V  214 (284)
                      +++|+++|+||++|.+. ..-+.+...+|.++.|+.| |+||++++|+++++|
T Consensus       384 ~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  436 (436)
T PLN02241        384 NAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI  436 (436)
T ss_pred             ceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence            47889999999998884 3345555555556666666 688888888877764

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.82  E-value=7.6e-09  Score=82.08  Aligned_cols=109  Identities=21%  Similarity=0.383  Sum_probs=79.8

Q ss_pred             eeCCCcEEcCCcEEec---ceEECCCCEECCCCEEecC---------CCcEEECCCCEECCCCEEecCCCCCccccccee
Q 039842           74 KVAVDAYVAPNVVLAG---QVTVCDGASVWPGSVLRGD---------LNKITVGFCSNVQERCVLHAAWNSPYRFVGFVS  141 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~---~v~IG~~~~I~~~~~I~g~---------~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~  141 (284)
                      .+...+.|..++.|.+   ++++|.+|++..+++|+..         -.++.||++++|+++|++.+             
T Consensus        35 ~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnA-------------  101 (184)
T KOG3121|consen   35 LLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNA-------------  101 (184)
T ss_pred             EEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeeh-------------
Confidence            3556678888999865   8999999999999999732         11588999999999999964             


Q ss_pred             eeecccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842          142 LLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP  221 (284)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~  221 (284)
                                             ..||..|.+|           .|++||.+|++.+.|+|-|++++.+.+++++.+.+.
T Consensus       102 -----------------------AqIgsyVh~G-----------knaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~  147 (184)
T KOG3121|consen  102 -----------------------AQIGSYVHLG-----------KNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIG  147 (184)
T ss_pred             -----------------------hhheeeeEec-----------cceeEcCceEhhhheeccCCcccCcccccCCceEEc
Confidence                                   4567776554           445556666666667777777777777777777765


Q ss_pred             CC-CEEecc
Q 039842          222 TG-ELWAGN  229 (284)
Q Consensus       222 ~~-~vv~G~  229 (284)
                      .+ +.+.|.
T Consensus       148 g~p~~~~G~  156 (184)
T KOG3121|consen  148 GNPAQVVGT  156 (184)
T ss_pred             CCCceeecc
Confidence            43 555664

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.73  E-value=9e-08  Score=89.11  Aligned_cols=50  Identities=16%  Similarity=0.334  Sum_probs=34.1

Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeC
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLP  215 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~  215 (284)
                      ++||++|.|+.+|.|.+++|++++.||.++.| .+++||+++.|++++.|+
T Consensus       311 s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l-~~~ivg~~~~i~~~~~i~  360 (361)
T TIGR02091       311 SVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVI-RNAIIDKNVRIGEGVVIG  360 (361)
T ss_pred             cEECCCCEECCCCEEeeeEEeCCCEECCCCEE-eeeEECCCCEECCCCEeC
Confidence            56667777777777777777777777777766 466666666666666554

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=6.9e-08  Score=85.69  Aligned_cols=30  Identities=17%  Similarity=0.073  Sum_probs=16.3

Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCc
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHS  194 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s  194 (284)
                      ++|-+++.|.+|+++-.++||-.+.||.-+
T Consensus       324 sIIl~d~ei~enavVl~sIigw~s~iGrWa  353 (407)
T KOG1460|consen  324 SIILDDAEIEENAVVLHSIIGWKSSIGRWA  353 (407)
T ss_pred             eeeccCcEeeccceEEeeeeccccccccee
Confidence            455555555555555555555555555433

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.63  E-value=1.9e-07  Score=87.02  Aligned_cols=82  Identities=15%  Similarity=0.229  Sum_probs=63.3

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS  153 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (284)
                      .+.+.++|++.+.+ +++.||++|.|+++ .|. +   ..||++|.|+++|+|.                          
T Consensus       279 ~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~-~---s~i~~~~~I~~~~~i~--------------------------  326 (361)
T TIGR02091       279 FLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVS-H---SVLGIRVRIGSGSTVE--------------------------  326 (361)
T ss_pred             CCCCceEecCCCEE-ECCEECCCCEECCC-EEE-c---cEECCCCEECCCCEEe--------------------------
Confidence            34567777777744 56677888888765 553 4   7788999999998884                          


Q ss_pred             CccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEc
Q 039842          154 NSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILM  197 (284)
Q Consensus       154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~  197 (284)
                                +++|++++.||.+|.+++++||+++.|+.++.|+
T Consensus       327 ----------~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~  360 (361)
T TIGR02091       327 ----------DSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIG  360 (361)
T ss_pred             ----------eeEEeCCCEECCCCEEeeeEECCCCEECCCCEeC
Confidence                      3789999999999998888888888888877764

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=7.6e-08  Score=88.07  Aligned_cols=61  Identities=20%  Similarity=0.265  Sum_probs=52.6

Q ss_pred             ceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842          164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW  226 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv  226 (284)
                      .++||++|.||+.|.|.++.|-+++.||.|+.| ++|+||.++.|+.++.+. |+.|+++-++
T Consensus       351 ~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~I-ensIIg~gA~Ig~gs~L~-nC~Ig~~yvV  411 (433)
T KOG1462|consen  351 RSVIGSNCDIGERVKVANSILMDNVVVGDGVNI-ENSIIGMGAQIGSGSKLK-NCIIGPGYVV  411 (433)
T ss_pred             eeeecCCccccCCcEEEeeEeecCcEecCCcce-ecceecccceecCCCeee-eeEecCCcEE
Confidence            379999999999999999999999999999988 789999999999988876 4566655554

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.62  E-value=2.8e-07  Score=87.48  Aligned_cols=33  Identities=12%  Similarity=0.197  Sum_probs=17.4

Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCcEEc
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILM  197 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~  197 (284)
                      ++|+++|.|+++|.|..++|+++|.|++++.|.
T Consensus       349 sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~  381 (407)
T PRK00844        349 SVLMDGVRIGRGAVVRRAILDKNVVVPPGATIG  381 (407)
T ss_pred             eEECCCCEECCCCEEEeeEECCCCEECCCCEEC
Confidence            445555555555555555555555555554443

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.57  E-value=6.7e-07  Score=75.60  Aligned_cols=76  Identities=14%  Similarity=0.164  Sum_probs=37.6

Q ss_pred             ceEECCCCEECCCceeecc-EECCCCEECCC-cEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842          164 ETSIERFVTIGAYCSLRSC-TIEPECIIGQH-SILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I~~v-~Igd~v~IG~~-s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      +++||+++.++.+|.|... ..++...--.. ......++||++|+||++++|.+|..|+++++ .|..+.+.+++++.
T Consensus        87 ~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG~gav-igagsVVtkdvp~~  164 (190)
T COG0110          87 GITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAV-IGAGSVVTKDVPPY  164 (190)
T ss_pred             CeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEECCCcE-EeeCCEEeCccCCC
Confidence            3667777777777766321 22211111111 22233455555555555555555555555555 34455555555443

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=98.57  E-value=1.8e-07  Score=79.72  Aligned_cols=35  Identities=26%  Similarity=0.347  Sum_probs=32.5

Q ss_pred             EECCCCEECCCcee-eccEECCCCEECCCcEEcCCC
Q 039842          166 SIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       166 ~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv  200 (284)
                      .||++|+||.+++| .+++||+++.||+|++|..++
T Consensus       202 ~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDV  237 (269)
T KOG4750|consen  202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDV  237 (269)
T ss_pred             cccCCeEEccccEEeCCeeECCCcEEeccceEEecc
Confidence            79999999999877 789999999999999998877

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.57  E-value=1.2e-07  Score=75.84  Aligned_cols=105  Identities=19%  Similarity=0.180  Sum_probs=82.4

Q ss_pred             ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECC
Q 039842           90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIER  169 (284)
Q Consensus        90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~  169 (284)
                      .+.|.+.+++-..+.|+||   ++|+++|++.+.+++-+...                                +++||+
T Consensus         8 svkIap~AvVCvEs~irGd---vti~~gcVvHP~a~~iA~aG--------------------------------PI~iGE   52 (190)
T KOG4042|consen    8 SVKIAPSAVVCVESDIRGD---VTIKEGCVVHPFAVFIATAG--------------------------------PIYIGE   52 (190)
T ss_pred             eeeecCceEEEEecccccc---eEecCCcEecceEEEEcccC--------------------------------CEEEcc
Confidence            4667777777778888888   99999999999999876543                                699999


Q ss_pred             CCEECCCceee--------------ccEECCCCEECCCcE-----EcCCCEECCCCEEcCCCeeCCCCeeCCCCEEecc
Q 039842          170 FVTIGAYCSLR--------------SCTIEPECIIGQHSI-----LMEGSMVETHAILEAGSVLPPGRRIPTGELWAGN  229 (284)
Q Consensus       170 ~v~Ig~~~~I~--------------~v~Igd~v~IG~~s~-----I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~  229 (284)
                      ++.|.+.++|.              +-.||++.+..-+|.     +++.-+|+..|.++.|+.|..++.|++++-+.+.
T Consensus        53 nniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~  131 (190)
T KOG4042|consen   53 NNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSH  131 (190)
T ss_pred             CchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEecc
Confidence            99999999883              368999988777775     5666667777777777777777777777666654

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.57  E-value=3.6e-07  Score=84.52  Aligned_cols=88  Identities=17%  Similarity=0.238  Sum_probs=51.7

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      |.......|++++..+..+ .++.|..||+|.|.....+|+.++.|+++++|.                           
T Consensus       276 IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G~V~nSVL~~~v~I~~gs~i~---------------------------  327 (393)
T COG0448         276 IYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISGTVENSVLFRGVRIGKGSVIE---------------------------  327 (393)
T ss_pred             eeecCCCCCCceEecCceE-eeeeeeCCeEEEeEEEeeEEecCeEECCCCEEE---------------------------
Confidence            3334444555555444442 245555555555433335666666666666663                           


Q ss_pred             ccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCC
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEG  199 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~g  199 (284)
                               +++|..+|.||.+|+|+.++|.++|.|+.|+.|+.+
T Consensus       328 ---------~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         328 ---------NSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             ---------eeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence                     366667777777777777777777766666666554

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.52  E-value=5.4e-07  Score=84.21  Aligned_cols=51  Identities=20%  Similarity=0.455  Sum_probs=43.5

Q ss_pred             ceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeC
Q 039842          164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLP  215 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~  215 (284)
                      +++|+++|.|+++|.|..++|+++|.|+.++.+ .+++||++++|++++.+.
T Consensus       304 ~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i-~~~ii~~~~~v~~~~~~~  354 (369)
T TIGR02092       304 NSILSRGVHVGKDALIKNCIIMQRTVIGEGAHL-ENVIIDKDVVIEPNVKIA  354 (369)
T ss_pred             CCEECCCCEECCCCEEEeeEEeCCCEECCCCEE-EEEEECCCCEECCCCEeC
Confidence            478999999999999999999999999999887 458888888888887775

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.52  E-value=4.1e-07  Score=86.78  Aligned_cols=55  Identities=11%  Similarity=0.325  Sum_probs=47.5

Q ss_pred             ceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCe
Q 039842          164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRR  219 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~  219 (284)
                      +++||++|.|+++|.|.+++|+++|.||.+|.| .+++|+++|.|+++++|+++..
T Consensus       343 ~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i-~~~ii~~~~~i~~~~~i~~~~~  397 (425)
T PRK00725        343 RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRL-RRCVIDRGCVIPEGMVIGEDPE  397 (425)
T ss_pred             CCEECCCCEECCCCEEeeeEEcCCCEECCCCEE-eeEEECCCCEECCCCEECCCCC
Confidence            478999999999999999999999999999988 5688888888888888876544

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.51  E-value=5.5e-07  Score=85.92  Aligned_cols=71  Identities=23%  Similarity=0.396  Sum_probs=56.7

Q ss_pred             ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECC
Q 039842           90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIER  169 (284)
Q Consensus        90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~  169 (284)
                      ++.||++|.| +++.|. +   .+||++|.|+++|.|.                                    +++|++
T Consensus       327 ~s~i~~~~~i-~~~~i~-~---svi~~~~~I~~~~~i~------------------------------------~svi~~  365 (425)
T PRK00725        327 NSLVSGGCII-SGAVVR-R---SVLFSRVRVNSFSNVE------------------------------------DSVLLP  365 (425)
T ss_pred             eCEEcCCcEE-cCcccc-C---CEECCCCEECCCCEEe------------------------------------eeEEcC
Confidence            5677777777 577664 3   7788899998888884                                    488999


Q ss_pred             CCEECCCceeeccEECCCCEECCCcEEcCCCE
Q 039842          170 FVTIGAYCSLRSCTIEPECIIGQHSILMEGSM  201 (284)
Q Consensus       170 ~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~  201 (284)
                      +|.||++|.|..++|+++|.|+.++.|++++.
T Consensus       366 ~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~~~  397 (425)
T PRK00725        366 DVNVGRSCRLRRCVIDRGCVIPEGMVIGEDPE  397 (425)
T ss_pred             CCEECCCCEEeeEEECCCCEECCCCEECCCCC
Confidence            99999999999988888888888777765543

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.50  E-value=4.9e-07  Score=84.52  Aligned_cols=78  Identities=15%  Similarity=0.215  Sum_probs=53.7

Q ss_pred             CCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcc
Q 039842           77 VDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSL  156 (284)
Q Consensus        77 ~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  156 (284)
                      +.++|++++.| .++.||++|.|+  ..|. +   .+||++|.|+++|.|.                             
T Consensus       277 ~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~-~---s~i~~~~~I~~~~~i~-----------------------------  320 (369)
T TIGR02092       277 PPTYYAENSKV-ENSLVANGCIIE--GKVE-N---SILSRGVHVGKDALIK-----------------------------  320 (369)
T ss_pred             CCcEEcCCCEE-EEeEEcCCCEEe--eEEe-C---CEECCCCEECCCCEEE-----------------------------
Confidence            44555555554 344455555553  1232 2   6788888888888884                             


Q ss_pred             ccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEc
Q 039842          157 YIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILM  197 (284)
Q Consensus       157 ~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~  197 (284)
                             +++|++++.|++++.+.+++||+++.||+++.+.
T Consensus       321 -------~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~  354 (369)
T TIGR02092       321 -------NCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIA  354 (369)
T ss_pred             -------eeEEeCCCEECCCCEEEEEEECCCCEECCCCEeC
Confidence                   4788999999999888888888888888877773

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.47  E-value=7.2e-07  Score=84.63  Aligned_cols=51  Identities=8%  Similarity=0.264  Sum_probs=46.2

Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCC
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPP  216 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~  216 (284)
                      ++||++|.|+.+|.|.+++|+++|.||.+|.| .+++|++++.|+++++|+.
T Consensus       332 svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        332 SVLSPNVVVESGAEVEDSVLMDGVRIGRGAVV-RRAILDKNVVVPPGATIGV  382 (407)
T ss_pred             CEECCCCEECCCCEEeeeEECCCCEECCCCEE-EeeEECCCCEECCCCEECC
Confidence            78999999999999999999999999999998 5689999999999988874

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.44  E-value=1.6e-06  Score=82.84  Aligned_cols=30  Identities=10%  Similarity=0.180  Sum_probs=14.3

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEe
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLR  106 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~  106 (284)
                      |++++.| +++.|. ++.||++|.|++++.|.
T Consensus       311 ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~  340 (429)
T PRK02862        311 IAEGCII-KNCSIH-HSVLGIRSRIESGCTIE  340 (429)
T ss_pred             ECCCCEE-CCcEEE-EEEEeCCcEECCCCEEE
Confidence            3444444 333332 34555555555555554

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.40  E-value=6.2e-07  Score=80.74  Aligned_cols=98  Identities=14%  Similarity=0.192  Sum_probs=65.6

Q ss_pred             cEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcc
Q 039842           85 VVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAE  164 (284)
Q Consensus        85 a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (284)
                      +.+.+++.+.+-+.+|.+|.|..+   ++||.+|.|++++.|.                                    +
T Consensus       259 ~~i~~nvlvd~~~~iG~~C~Ig~~---vvIG~r~~i~~gV~l~------------------------------------~  299 (371)
T KOG1322|consen  259 SKIVGNVLVDSIASIGENCSIGPN---VVIGPRVRIEDGVRLQ------------------------------------D  299 (371)
T ss_pred             ccccccEeeccccccCCccEECCC---ceECCCcEecCceEEE------------------------------------e
Confidence            333344444433444444444333   5566777777777774                                    3


Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP  221 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~  221 (284)
                      ++|-.+++++..+.|..+.+|-++.||.++.|-..++||++++|.....|.++...|
T Consensus       300 s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g~~l~  356 (371)
T KOG1322|consen  300 STILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYVNEGSGLP  356 (371)
T ss_pred             eEEEccceechhHHHHhhhccccccccCceEEecccEeccceEEecccccccceeEE
Confidence            667777788888888888888888888888888888888888887766666554443

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=1.7e-06  Score=77.04  Aligned_cols=105  Identities=21%  Similarity=0.301  Sum_probs=69.6

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      |++++.++|+++|++||+||.++.|++|+.|+ +   .+|=++|.|.+|+++-                           
T Consensus       291 IhPsakvhptAkiGPNVSIga~vrvg~GvRl~-~---sIIl~d~ei~enavVl---------------------------  339 (407)
T KOG1460|consen  291 IHPSAKVHPTAKIGPNVSIGANVRVGPGVRLR-E---SIILDDAEIEENAVVL---------------------------  339 (407)
T ss_pred             EcCcceeCCccccCCCceecCCceecCCceee-e---eeeccCcEeeccceEE---------------------------
Confidence            67777777778888888888888888888886 4   6778888888888773                           


Q ss_pred             ccccccCCcceEECCCCEECCCceeec--cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSLRS--CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI  220 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~--v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I  220 (284)
                               +++||-.+.||..+.+.+  +.--.+-.-.+-++.+.+|.+++.|.|- ++.|.+++.+
T Consensus       340 ---------~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~-~s~vlp~k~l  397 (407)
T KOG1460|consen  340 ---------HSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVL-NSIVLPNKEL  397 (407)
T ss_pred             ---------eeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEe-eeeEecCCcc
Confidence                     378888888888777743  2222222222334445555566555554 4444444444

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=98.36  E-value=3.9e-07  Score=55.36  Aligned_cols=32  Identities=34%  Similarity=0.624  Sum_probs=17.3

Q ss_pred             cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeC
Q 039842          182 CTIEPECIIGQHSILMEGSMVETHAILEAGSVLP  215 (284)
Q Consensus       182 v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~  215 (284)
                      ++|||+|+||++|.|  ++.|||+|+|++|++|.
T Consensus         2 v~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~   33 (34)
T PF14602_consen    2 VTIGDNCFIGANSTI--GITIGDGVIIGAGVVIT   33 (34)
T ss_dssp             EEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEE
T ss_pred             eEECCCEEECccccc--CCEEcCCCEECCCCEEc
Confidence            456666666666666  46666666666666654

...

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=98.26  E-value=1e-06  Score=53.57  Aligned_cols=33  Identities=27%  Similarity=0.359  Sum_probs=24.4

Q ss_pred             ceEECCCCEECCCceeeccEECCCCEECCCcEEc
Q 039842          164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILM  197 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~  197 (284)
                      +++||++|+||++|.+ +++|||+|.|++|++|.
T Consensus         1 pv~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I~   33 (34)
T PF14602_consen    1 PVTIGDNCFIGANSTI-GITIGDGVIIGAGVVIT   33 (34)
T ss_dssp             TEEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEEE
T ss_pred             CeEECCCEEECccccc-CCEEcCCCEECCCCEEc
Confidence            3789999999999998 79999999999888874

...

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.20  E-value=8.3e-06  Score=75.61  Aligned_cols=94  Identities=16%  Similarity=0.192  Sum_probs=70.3

Q ss_pred             EcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccccc
Q 039842           81 VAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAW  160 (284)
Q Consensus        81 I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  160 (284)
                      -.++-.|......-+.+.+..++.+. +   ..|+++|+|.-  .|                                  
T Consensus       270 yd~~w~IyT~~~~~pPak~~~~s~v~-n---SLv~~GciI~G--~V----------------------------------  309 (393)
T COG0448         270 YDRNWPIYTKNKNLPPAKFVNDSEVS-N---SLVAGGCIISG--TV----------------------------------  309 (393)
T ss_pred             cCCCCceeecCCCCCCceEecCceEe-e---eeeeCCeEEEe--EE----------------------------------
Confidence            45555566666666666666666653 2   44555555544  22                                  


Q ss_pred             CCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCC
Q 039842          161 LPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPG  217 (284)
Q Consensus       161 ~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~  217 (284)
                        .+++|+.++.|+.+|+|..++|-.+|.||.+|.| ..|+|.++|+|++|++|+..
T Consensus       310 --~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l-~~aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         310 --ENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVL-RRAIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             --EeeEEecCeEECCCCEEEeeEEeCCcEECCCCEE-EEEEeCCCcEeCCCcEEcCC
Confidence              2589999999999999999999999999999988 56999999999999988855

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=98.08  E-value=1.9e-06  Score=52.82  Aligned_cols=34  Identities=21%  Similarity=0.476  Sum_probs=25.1

Q ss_pred             cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeC
Q 039842          182 CTIEPECIIGQHSILMEGSMVETHAILEAGSVLP  215 (284)
Q Consensus       182 v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~  215 (284)
                      ++||++|+|+.++.|.+++.||++++|+++++|.
T Consensus         2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~   35 (36)
T PF00132_consen    2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG   35 (36)
T ss_dssp             EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred             CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence            5677777777777777778788777777777764

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.07  E-value=4.9e-06  Score=75.07  Aligned_cols=56  Identities=20%  Similarity=0.094  Sum_probs=28.8

Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP  221 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~  221 (284)
                      ++|+++|.|.+..++.+..+++++|| +.+.++.++.||.+++|..++++++++.|.
T Consensus       289 ~~i~~gV~l~~s~il~~~~~~~~s~i-~s~ivg~~~~IG~~~~id~~a~lG~nV~V~  344 (371)
T KOG1322|consen  289 VRIEDGVRLQDSTILGADYYETHSEI-SSSIVGWNVPIGIWARIDKNAVLGKNVIVA  344 (371)
T ss_pred             cEecCceEEEeeEEEccceechhHHH-HhhhccccccccCceEEecccEeccceEEe
Confidence            55555555555555555556655555 334444445555555444444444444443

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.73  E-value=2.9e-05  Score=47.43  Aligned_cols=35  Identities=20%  Similarity=0.368  Sum_probs=23.3

Q ss_pred             ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEe
Q 039842           90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLH  127 (284)
Q Consensus        90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~  127 (284)
                      ++.||+++.|++++.|.++   +.||++|.|+++++|.
T Consensus         1 ~~~Ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~I~   35 (36)
T PF00132_consen    1 NVVIGDNVIIGPNAVIGGG---VVIGDNCVIGPGVVIG   35 (36)
T ss_dssp             TEEEETTEEEETTEEEETT---EEE-TTEEEETTEEEE
T ss_pred             CCEEcCCCEECCCcEecCC---CEECCCCEEcCCCEEC
Confidence            3566777777777777655   7777777777777764

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.41  E-value=0.001  Score=57.38  Aligned_cols=68  Identities=16%  Similarity=0.282  Sum_probs=34.9

Q ss_pred             ECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeec
Q 039842          167 IERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVR  235 (284)
Q Consensus       167 Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~  235 (284)
                      +..++.|+.+|.+ .+++.+.++.||..+.|.+..++...--|++.+.|.. .-+..+-++.-+|..+..
T Consensus        53 va~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Ieg-gfva~g~Ivirnpvpvl~  121 (277)
T COG4801          53 VAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIEG-GFVAKGWIVIRNPVPVLE  121 (277)
T ss_pred             EecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEEec-CeeecceEEEcCCccEEE
Confidence            3344445554444 2345555666666665555555544444444444432 223345566777776554

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=96.95  E-value=0.0023  Score=55.25  Aligned_cols=45  Identities=11%  Similarity=0.132  Sum_probs=22.5

Q ss_pred             eEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEc
Q 039842          165 TSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILE  209 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~  209 (284)
                      +.|+..|.+..|+.+ ....||+++.|+..-++..+-.||+++.|.
T Consensus        57 iridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Ie  102 (277)
T COG4801          57 IRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIE  102 (277)
T ss_pred             eeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEEe
Confidence            444555555555444 234555555555555555555555555444

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=87.66  E-value=1.6  Score=41.64  Aligned_cols=40  Identities=18%  Similarity=0.304  Sum_probs=27.7

Q ss_pred             ceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECC
Q 039842          164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVET  204 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~  204 (284)
                      +++|..++.+|++++|..+.|+.++.||.+|+|. |+.+.+
T Consensus       284 nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIis-Gv~~~~  323 (414)
T PF07959_consen  284 NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIIS-GVDINS  323 (414)
T ss_pred             EeEecCCceECCCCEEEeeecCCCCEECCCCEEE-CCcccc
Confidence            3667777777777777777777777777777763 343333

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=86.76  E-value=1.1  Score=42.68  Aligned_cols=42  Identities=14%  Similarity=0.179  Sum_probs=22.8

Q ss_pred             EECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCee
Q 039842          172 TIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVL  214 (284)
Q Consensus       172 ~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V  214 (284)
                      .+.+.+.|-++.|..++.+|.+++| ++|.|+.++.||.+++|
T Consensus       275 ~~~~~~~VinSil~~~~~vg~~svI-e~s~l~~~~~IG~~cIi  316 (414)
T PF07959_consen  275 DSEASSCVINSILEGGVSVGPGSVI-EHSHLGGPWSIGSNCII  316 (414)
T ss_pred             ccCCCeeEEEeEecCCceECCCCEE-EeeecCCCCEECCCCEE
Confidence            4455566666666666666666654 33444444444444443

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PF04613 LpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ; InterPro: IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2

Probab=84.99  E-value=0.064  Score=38.04  Aligned_cols=32  Identities=13%  Similarity=0.075  Sum_probs=22.7

Q ss_pred             ChhhhhhhHhhhhhhcccchhhhhhhhhhhhhhc
Q 039842            1 MAALARITRRALTTQLSHGHVIRRAFSTSAAATA   34 (284)
Q Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   34 (284)
                      +++|+.+++.+++|+.+.  +|...+..++|++.
T Consensus         8 va~l~~A~~~~isF~~~~--ky~~~l~~s~A~av   39 (72)
T PF04613_consen    8 VAPLEEAGPGDISFLDNP--KYLKELKNSKAGAV   39 (72)
T ss_dssp             EE-TTT--TTEEEEE-SS--CGGGGGGG---SEE
T ss_pred             ecChhhcCCCCEEEecCH--HHHHHHHhCCCeEE
Confidence            368999999999999998  99999999998887

3.1 from EC) catalyses an early step in lipid A biosynthesis []: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] This enzyme contains several hexapeptide repeats and forms part of the wider bacterial transferase hexapeptide repeat family. This entry represents the non-repeating region of the enzyme.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0009245 lipid A biosynthetic process; PDB: 3PMO_A 3EH0_B 2IU9_A 2IU8_B 2IUA_A.

>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F

Probab=84.39  E-value=3.6  Score=30.00  Aligned_cols=16  Identities=50%  Similarity=0.650  Sum_probs=13.4

Q ss_pred             eeCCCCEEeccCceee
Q 039842          219 RIPTGELWAGNPARFV  234 (284)
Q Consensus       219 ~I~~~~vv~G~pa~~~  234 (284)
                      +|||++++.|+|+++.
T Consensus         1 DVpPf~~~~G~~a~~~   16 (83)
T PF13720_consen    1 DVPPFMLVAGNPARIR   16 (83)
T ss_dssp             BB-TTEEEETTTTEEE
T ss_pred             CCCCeEEecCCccEEe
Confidence            6899999999999865

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	284
3ixc_A	191	Crystal Structure Of Hexapeptide Transferase Family		4e-27
1v3w_A	173	Structure Of Ferripyochelin Binding Protein From Py		5e-20
3r1w_A	189	Crystal Structure Of A Carbonic Anhydrase From A Cr		3e-19
1xhd_A	173	X-Ray Crystal Structure Of Putative Acetyltransfera		4e-19
3tio_A	183	Crystal Structures Of Yrda From Escherichia Coli, A		7e-19
3vnp_A	183	Crystal Structure Of Hypothetical Protein (Gk2848)		1e-18
3r3r_A	187	Structure Of The Yrda Ferripyochelin Binding Protei		1e-17

>pdb|3IXC|A Chain A, Crystal Structure Of Hexapeptide Transferase Family Protein From Anaplasma Phagocytophilum Length = 191

Iteration: 1
 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 30/196 (15%)
Query: 65  IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERC 124
           ++P     P V   A++A N  + G V +   AS+W G+VLRGD++KI VG  +N+Q+  
Sbjct: 26  LVPYAGVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNT 85
Query: 125 VLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTI 184
           V+H                         ++S++      +T I +FVTIG  C L +CT+
Sbjct: 86  VVH-------------------------TDSMH-----GDTVIGKFVTIGHSCILHACTL 115
Query: 185 EPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLE 244
                +G  SI+M+ +++E  ++L AGS+L  G+ + +GELWAG PA+F+R +T EE L 
Sbjct: 116 GNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRPAKFLRMMTEEEILY 175
Query: 245 IPKLAVAINDLSKSHF 260
           + K A     LS+ + 
Sbjct: 176 LQKSAENYIALSRGYL 191

>pdb|1V3W|A Chain A, Structure Of Ferripyochelin Binding Protein From Pyrococcus Horikoshii Ot3 Length = 173

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 31/189 (16%)
Query: 73  PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS 132
           P++   A+V  N V+ G V + +  SVWP +VLRGD+ +I VG  SNVQ+   +H +   
Sbjct: 11  PRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGY 70
Query: 133 PYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQ 192
           P                               T I  +VTIG    +    +    IIG 
Sbjct: 71  P-------------------------------TEIGEYVTIGHNAMVHGAKVGNYVIIGI 99
Query: 193 HSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAI 252
            S++++G+ +  H I+ AG+V+PP + IP   L  G P + VR LT EE     K A   
Sbjct: 100 SSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNAEIY 159
Query: 253 NDLSKSHFS 261
            +L++ H  
Sbjct: 160 VELAEKHIK 168

>pdb|3R1W|A Chain A, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil Degrading Psychrophilic Library Length = 189

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 24/169 (14%)
Query: 73  PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS 132
           PK+    +V  + V+ G V + D  SVWP +V+RGD++ I +G  ++VQ+  VLH    S
Sbjct: 20  PKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHAS 79
Query: 133 PYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQ 192
            Y   G+  ++ D                         VTIG    L  CTI    +IG 
Sbjct: 80  DYNPGGYPLIIGD------------------------DVTIGHQAMLHGCTIGNRVLIGM 115
Query: 193 HSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
            S++M+G++VE   I+ AG+ + PG+ + +G ++ G PA+ VR +T +E
Sbjct: 116 KSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGTPAKKVRPITEKE 164

>pdb|1XHD|A Chain A, X-Ray Crystal Structure Of Putative Acetyltransferase, Product Of Bc4754 Gene [bacillus Cereus] Length = 173

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 31/184 (16%)
Query: 65  IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERC 124
           I P  +  PK+A  A++A  V + G V V + +S+W  +V+RGD++   +G   NVQ++C
Sbjct: 5   IYPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQC 64
Query: 125 VLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTI 184
            LH +   P         LI                      +E  VT+G    L SC I
Sbjct: 65  TLHQSPQYP---------LI----------------------LEDDVTVGHQVILHSCHI 93
Query: 185 EPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLE 244
           + + +IG  SI+++G+ +   A + AGS++  G++IP   L  G PA+ +R LT E+  +
Sbjct: 94  KKDALIGXGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTAEDRKD 153
Query: 245 IPKL 248
             ++
Sbjct: 154 XERI 157

>pdb|3TIO|A Chain A, Crystal Structures Of Yrda From Escherichia Coli, A Homologous Protein Of Gamma-Class Carbonic Anhydrase, Show Possible Allosteric Conformations Length = 183

Iteration: 1
 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 24/175 (13%)
Query: 67  PLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVL 126
           P     P++     +  + V+ G V + D   +WP  V+RGD++ + +G  +N+Q+  +L
Sbjct: 6   PYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSML 65
Query: 127 HAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEP 186
           H    S Y                P  N L         +I   VT+G    L  CTI  
Sbjct: 66  HVTHKSSYN---------------PDGNPL---------TIGEDVTVGHKVMLHGCTIGN 101
Query: 187 ECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
             ++G  SIL++G++VE   ++ AGS++P  +R+ +G L+ G+P + +R L+ EE
Sbjct: 102 RVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEE 156

>pdb|3VNP|A Chain A, Crystal Structure Of Hypothetical Protein (Gk2848) From Geobacillus Kaustophilus Length = 183

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 31/184 (16%)
Query: 65  IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERC 124
           I P     P++A  A++A  V + G V + +  S+W  +V+RGD+    +G   N+Q+  
Sbjct: 3   IYPYKGKTPQIAASAFIADYVTITGDVVIGEETSIWFNTVIRGDVAPTVIGNRVNIQDNS 62
Query: 125 VLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTI 184
           +LH + N+P         LI                      IE  VT+G    L S  +
Sbjct: 63  ILHQSPNNP---------LI----------------------IEDGVTVGHQVILHSAIV 91
Query: 185 EPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLE 244
               +IG  SI+++ + +   A + AGS++PPG++IP   L  G PA+ VR LT ++  E
Sbjct: 92  RKNALIGMGSIILDRAEIGEGAFIGAGSLVPPGKKIPPNTLALGRPAKVVRELTEDDIRE 151
Query: 245 IPKL 248
           + ++
Sbjct: 152 MERI 155

>pdb|3R3R|A Chain A, Structure Of The Yrda Ferripyochelin Binding Protein From Salmonella Enterica Length = 187

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 67  PLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVL 126
           P     P +     +  + V+ G V + D   +WP  V+RGD+N + +G  +N+Q+  VL
Sbjct: 10  PYKNLFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVL 69
Query: 127 HAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEP 186
           H    S                S P  N L I            VT+G    L  CTI  
Sbjct: 70  HVTHKSS---------------SNPHGNPLIIG---------EDVTVGHKVMLHGCTIGN 105
Query: 187 ECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
             ++G  SI+++G+++E   ++ AGS++P  +R+ +G L+ G+P + +R L+  E
Sbjct: 106 RVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAE 160

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	284
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	2e-54
3r3r_A	187	Ferripyochelin binding protein; structural genomic	3e-53
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	2e-50
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	1e-49
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	6e-48
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	8e-39
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	2e-33
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	2e-11
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	3e-10
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	9e-08
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	1e-07
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	2e-07
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	4e-07
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	1e-06
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	2e-06
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	4e-06
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	5e-05
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	3e-04
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	5e-04
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	6e-04

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} Length = 189

 Score =  174 bits (442), Expect = 2e-54
 Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 24/198 (12%)

Query: 65  IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERC 124
           +       PK+    +V  + V+ G V + D  SVWP +V+RGD++ I +G  ++VQ+  
Sbjct: 12  VRTYQGISPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGS 71

Query: 125 VLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTI 184
           VLH    S Y   G+                           I   VTIG    L  CTI
Sbjct: 72  VLHITHASDYNPGGY------------------------PLIIGDDVTIGHQAMLHGCTI 107

Query: 185 EPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLE 244
               +IG  S++M+G++VE   I+ AG+ + PG+ + +G ++ G PA+ VR +T +E   
Sbjct: 108 GNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGTPAKKVRPITEKERSF 167

Query: 245 IPKLAVAINDLSKSHFSE 262
               A     L   H +E
Sbjct: 168 FTYGAGNYVRLKDKHLAE 185

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} Length = 187

 Score =  170 bits (434), Expect = 3e-53
 Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 24/198 (12%)

Query: 65  IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERC 124
           + P     P +     +  + V+ G V + D   +WP  V+RGD+N + +G  +N+Q+  
Sbjct: 8   LRPYKNLFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGS 67

Query: 125 VLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTI 184
           VLH    S     G                            I   VT+G    L  CTI
Sbjct: 68  VLHVTHKSSSNPHGN------------------------PLIIGEDVTVGHKVMLHGCTI 103

Query: 185 EPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLE 244
               ++G  SI+++G+++E   ++ AGS++P  +R+ +G L+ G+P + +R L+  E   
Sbjct: 104 GNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAERSG 163

Query: 245 IPKLAVAINDLSKSHFSE 262
           +   A         + S+
Sbjct: 164 LQYSANNYVKWKDDYLSQ 181

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} Length = 191

 Score =  163 bits (415), Expect = 2e-50
 Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 30/199 (15%)

Query: 62  QRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQ 121
           +  ++P     P V   A++A N  + G V +   AS+W G+VLRGD++KI VG  +N+Q
Sbjct: 23  REVLVPYAGVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQ 82

Query: 122 ERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRS 181
           +  V+H                    M                T I +FVTIG  C L +
Sbjct: 83  DNTVVHTD-----------------SMHGD-------------TVIGKFVTIGHSCILHA 112

Query: 182 CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
           CT+     +G  SI+M+ +++E  ++L AGS+L  G+ + +GELWAG PA+F+R +T EE
Sbjct: 113 CTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRPAKFLRMMTEEE 172

Query: 242 TLEIPKLAVAINDLSKSHF 260
            L + K A     LS+ + 
Sbjct: 173 ILYLQKSAENYIALSRGYL 191

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A Length = 173

 Score =  161 bits (409), Expect = 1e-49
 Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 31/195 (15%)

Query: 65  IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERC 124
           I P  +  PK+A  A++A  V + G V V + +S+W  +V+RGD++   +G   NVQ++C
Sbjct: 5   IYPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQC 64

Query: 125 VLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTI 184
            LH +   P                                 +E  VT+G    L SC I
Sbjct: 65  TLHQSPQYP-------------------------------LILEDDVTVGHQVILHSCHI 93

Query: 185 EPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLE 244
           + + +IG  SI+++G+ +   A + AGS++  G++IP   L  G PA+ +R LT E+  +
Sbjct: 94  KKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTAEDRKD 153

Query: 245 IPKLAVAINDLSKSH 259
           + ++     +  + +
Sbjct: 154 MERIRTQYVEKGQYY 168

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A Length = 173

 Score =  156 bits (397), Expect = 6e-48
 Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 31/198 (15%)

Query: 65  IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERC 124
           I  +    P++   A+V  N V+ G V + +  SVWP +VLRGD+ +I VG  SNVQ+  
Sbjct: 3   IYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNV 62

Query: 125 VLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTI 184
            +H +   P                               T I  +VTIG    +    +
Sbjct: 63  SIHTSHGYP-------------------------------TEIGEYVTIGHNAMVHGAKV 91

Query: 185 EPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLE 244
               IIG  S++++G+ +  H I+ AG+V+PP + IP   L  G P + VR LT EE   
Sbjct: 92  GNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEW 151

Query: 245 IPKLAVAINDLSKSHFSE 262
             K A    +L++ H   
Sbjct: 152 TKKNAEIYVELAEKHIKG 169

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A Length = 247

 Score =  135 bits (341), Expect = 8e-39
 Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 19/185 (10%)

Query: 73  PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN-KITVGFCSNVQERCVLHAAWN 131
           P +   AY+ P   + G+VT+     V P + +R D    I VG  SNVQ+  VLHA   
Sbjct: 60  PVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALET 119

Query: 132 SPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR-SCTIEPECII 190
                          +      N + +        I   V++     +     +  +  I
Sbjct: 120 INE------------EGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFI 167

Query: 191 GQHSILMEGSMVE----THAILEAGSVLPPGRRIPTGELWAGN-PARFVRTLTHEETLEI 245
           G  + + +  +             G  +P GR IP G +      A  +  +T +     
Sbjct: 168 GMQAFVFKSKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSH 227

Query: 246 PKLAV 250
              AV
Sbjct: 228 TNEAV 232

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A Length = 213

 Score =  120 bits (302), Expect = 2e-33
 Identities = 37/197 (18%), Positives = 62/197 (31%), Gaps = 29/197 (14%)

Query: 65  IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN-KITVGFCSNVQER 123
                   P++A  AYV     L G V + D   + PG+ +R D      +G  +N+Q+ 
Sbjct: 32  PWSRDLAEPEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDG 91

Query: 124 CVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR-SC 182
            V+H                 D                     I   V+I     +    
Sbjct: 92  VVIHGLQQGRVI--------GDDGQEYS-------------VWIGDNVSITHMALIHGPA 130

Query: 183 TIEPECIIGQHSILMEGSMVETHAILEAGSV-----LPPGRRIPTGELWAGNPARFVRTL 237
            I   C IG  S +     V    ++    +     +PPG+ +P+G +            
Sbjct: 131 YIGDGCFIGFRSTVFNA-RVGAGCVVMMHVLIQDVEIPPGKYVPSGMVITTQQQADRLPN 189

Query: 238 THEETLEIPKLAVAIND 254
             E  +   +  V IN+
Sbjct: 190 VEESDIHFAQHVVGINE 206

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 25/165 (15%), Positives = 58/165 (35%), Gaps = 29/165 (17%)

Query: 78  DAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFV 137
           +  +    +L+G+VT+   + +   + L G    I +   +N+  R +++A     +   
Sbjct: 58  NVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYA-AIDDFSGN 116

Query: 138 GFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILM 197
             +   I  Q         Y      +  +++ V IGA                 HSI+ 
Sbjct: 117 ALMGPTIPNQ---------YKNVKTGKVILKKHVIIGA-----------------HSIIF 150

Query: 198 EGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEET 242
              ++     + A S++     +    ++ G P R ++    +  
Sbjct: 151 PNVVIGEGVAVGAMSMVK--ESLDDWYIYVGVPVRKIKARKRKIV 193

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 41/158 (25%)

Query: 80  YVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGF 139
            + P+ V++  V + +G +V  G  +  D     +G  + +    V+             
Sbjct: 101 AIHPSAVVSPSVRLGEGVAVMAGVAINAD---SWIGDLAIINTGAVVDH----------- 146

Query: 140 VSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRS-CTIEPECIIGQHSILME 198
                                   +  +     +G   +L    ++     +G  + ++ 
Sbjct: 147 ------------------------DCRLGAACHLGPASALAGGVSVGERAFLGVGARVIP 182

Query: 199 GSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRT 236
           G  +    I+ AG V+   R +P   L  G PA+    
Sbjct: 183 GVTIGADTIVGAGGVVV--RDLPDSVLAIGVPAKIKGD 218

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 51.0 bits (122), Expect = 9e-08
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 22/106 (20%)

Query: 165 TSIERFVTIGAYCSLRSC---------------TIEPECIIGQHSILMEGSMVETHAILE 209
             +    T+G  C + +                 +E + +IG + +++EG  V   A++ 
Sbjct: 134 AVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVA 193

Query: 210 AGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDL 255
           AG+V+     +P   + AG PAR ++ +  E+T    K    I   
Sbjct: 194 AGAVV--TEDVPPYTVVAGTPARVIKEID-EKT----KAKTEIKQE 232

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 24/191 (12%), Positives = 50/191 (26%), Gaps = 48/191 (25%)

Query: 74  KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSP 133
             A  A V+   V+ G   + +   V   + L        +G  SN QE C +  +    
Sbjct: 275 GSASGASVSGYAVIKGDTVIGENVLVSQRAYLD----NAWMGKGSNAQENCYIINS---- 326

Query: 134 YRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQH 193
                                            +ER         + +  +      G +
Sbjct: 327 --------------------------------RLERNCVTAHGGKIINAHLGDMIFTGFN 354

Query: 194 SILMEGSM----VETHAILEAGSVLPPGRR--IPTGELWAGNPARFVRTLTHEETLEIPK 247
           S L         +    ++   +++       IP G L  G      +      ++   +
Sbjct: 355 SFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHLVWGYIRN--KADLAAHSISFEE 412

Query: 248 LAVAINDLSKS 258
            A    +++  
Sbjct: 413 FAKVDGEVTMG 423

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 164 ETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPT 222
           E  I  F  +        +  I   C +G +S ++    +   +IL  G+ L   +    
Sbjct: 125 ECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATL--VKNQDE 182

Query: 223 GELWAGNPARFV 234
             ++ G PA+ +
Sbjct: 183 KGVFVGVPAKRM 194

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 31/187 (16%), Positives = 67/187 (35%), Gaps = 39/187 (20%)

Query: 78  DAYVAPNVVLAGQVTVCDGASVWPGSVLRGDL---------------NKITVGFCSNVQE 122
            A + P  ++     +   + +W    + G                 N++ +G    +Q 
Sbjct: 3   MATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQN 62

Query: 123 RCVLHAAWN-SPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRS 181
              ++         F G   +  ++    PR+          +T + +  T+GA     +
Sbjct: 63  NVSVYDNVFLEDDVFCGPSMVFTNVYN--PRAAI-ERKSEYRDTIVRQGATLGA-----N 114

Query: 182 CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLT-HE 240
           CT+     IG+++ +  G++V               + +P   L  G PAR +  ++ H 
Sbjct: 115 CTVVCGATIGRYAFVGAGAVV--------------NKDVPDFALVVGVPARQIGWMSRHG 160

Query: 241 ETLEIPK 247
           E L++P 
Sbjct: 161 EQLDLPL 167

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} Length = 219

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 180 RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTH 239
               I  +  IG+   +M G  +   AI+ A +V+   + +    +  GNP +F+R    
Sbjct: 117 GDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVT--KNVAPYSIVGGNPLKFIRKRFS 174

Query: 240 EETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKK 278
           +  +E   LA+   +L     +E LP+     ++E  K+
Sbjct: 175 DGVIEE-WLALQWWNLDMKIINENLPFII-NGDIEMLKR 211

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* Length = 212

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 4/104 (3%)

Query: 175 AYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV 234
            Y       I  E  IG  ++ M G  V   AI+ + +++     +    +  GNPAR +
Sbjct: 104 GYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVT--GDVEPYAIVGGNPARTI 161

Query: 235 RTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKK 278
           R    +  ++   L +A  D   +     +P      ++    +
Sbjct: 162 RKRFSDGDIQN-LLEMAWWDWPLADIEAAMPLLC-TGDIPALYQ 203

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* Length = 209

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 183 TIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEET 242
            I  +  IG+  ++M G  +   AI+ A SV+   + I    L  GNPA  ++    ++T
Sbjct: 115 IIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVV--KDIAPYMLAGGNPANEIKQRFDQDT 172

Query: 243 LEIPKLAVAINDLSKSHFSEFLPY 266
           +    L +   +      +E +  
Sbjct: 173 INQ-LLDIKWWNWPIDIINENIDK 195

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} Length = 212

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 180 RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTH 239
               I  +  IG  +++M G  +   AI+ + SV+   + +   E+   NPA+ ++    
Sbjct: 110 GDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVT--KDVAPYEVVGSNPAKHIKFRFS 167

Query: 240 EETLEIPKLAVAINDLSKSHFSEFLPY 266
           +  + +  L +A  +  +S   E +  
Sbjct: 168 DVEIAM-LLEMAWWNWPESWLKESMQS 193

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 48/345 (13%), Positives = 85/345 (24%), Gaps = 113/345 (32%)

Query: 8   TRRALTTQLSHGHVIRRAFSTSAAAT-----ATATATTTKADAKSITPSADRVKWDYRGQ 62
           T R   T LS    + + F             +   T  +       PS     +  +  
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------PSMMTRMYIEQRD 117

Query: 63  R-----QIIPLGQWVP---------KVAVDAYVAPNVVLAG------QV---TVCDGASV 99
           R     Q+      V          +  ++   A NV++ G            VC    V
Sbjct: 118 RLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 100 ---------W--------PGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSL 142
                    W        P +VL   L K+      N   R     + N   R     + 
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLE-MLQKLLYQIDPNWTSRS--DHSSNIKLRIHSIQAE 233

Query: 143 LIDLQMSCPRSNSLYI---AWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEG 199
           L  L  S P  N L +          +   F  +        C I               
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNA--KAWNAF-NLS-------CKI--------------- 268

Query: 200 SMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEI------------PK 247
            ++ T        +        + +           TLT +E   +            P+
Sbjct: 269 -LLTTRFKQVTDFLSAATTTHISLD-------HHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 248 LAVAINDLSKSHFSEFL--------PYSTVYLEVEKFKKSLGITI 284
             +  N    S  +E +         +   ++  +K    +  ++
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWK--HVNCDKLTTIIESSL 363

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 19/77 (24%)

Query: 159 AWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGR 218
           +      +IE F  I A        + P   I + +++  G++V               +
Sbjct: 165 SNELLGVTIELFAVIAA-----RSVVLPGIHINEDALVGAGAVV--------------TK 205

Query: 219 RIPTGELWAGNPARFVR 235
            +P   +  GNPAR + 
Sbjct: 206 DVPKETVVVGNPAREIC 222

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} Length = 252

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 183 TIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
            I     +G++  +M+G  V + +++  GS++   + +P+    AGNPA+ ++      
Sbjct: 165 IISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVT--KDVPSMCAAAGNPAKIIKRNIIWA 221

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* Length = 203

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 183 TIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
           TI     IG H ++  G  +  ++++ AGS++   + IP   + AG P R +R +   +
Sbjct: 133 TIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVT--KDIPPNVVAAGVPCRVIREINDRD 189

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* Length = 199

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 183 TIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEET 242
            I      G H  ++ G  +   +++ AGSV+   + IP   L  GNP + VR + ++  
Sbjct: 132 HIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVT--KDIPPHSLAVGNPCKVVRKIDNDLP 189

Query: 243 LEIPK 247
            E   
Sbjct: 190 SETLN 194

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	284
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.96
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.96
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.96
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.96
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.96
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.96
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.93
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.92
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.92
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.92
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.92
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.92
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.91
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.91
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.9
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.9
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.9
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.9
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.9
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.9
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.9
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.88
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.88
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.87
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.86
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.86
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.86
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.85
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.85
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.85
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.85
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.84
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.84
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.84
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.83
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.83
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.82
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.82
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.82
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.82
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.82
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.82
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.81
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.81
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.81
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.8
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.8
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.8
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	99.8
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.79
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.79
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.79
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.79
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.78
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.77
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.76
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.76
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.74
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.73
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.72
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.72
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	99.72
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.71
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.71
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.7
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.7
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.7
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.7
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.7
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.7
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.69
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.69
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.69
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.68
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.68
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.65
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.63
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.63
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.62
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.59
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.58
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.57
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.57
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.56
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.55
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.53
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.52
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.52
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.49
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.49
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.48
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.48
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.48
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.48
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.47
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.45
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.43
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.38
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.36
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.36
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.33
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.31
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.28
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.27
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.26
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.25
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.25
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.24
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.22
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.22
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.21
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.13
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.13
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.11
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.09
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.08
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.85
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.77

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.96  E-value=1.5e-28  Score=207.25  Aligned_cols=173  Identities=33%  Similarity=0.516  Sum_probs=154.2

Q ss_pred             eecCCCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeec
Q 039842           66 IPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLID  145 (284)
Q Consensus        66 ~~~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~  145 (284)
                      ..+....+.++++++|++++.|.+++.||++|.|++++.|.++...+.||++|.|+++++|....+....          
T Consensus        13 ~~~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~----------   82 (189)
T 3r1w_A           13 RTYQGISPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYN----------   82 (189)
T ss_dssp             ECBTTBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSS----------
T ss_pred             eeccCcCCEECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCC----------
Confidence            3455667889999999999999999999999999999999866556899999999999999765331111          


Q ss_pred             ccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842          146 LQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL  225 (284)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v  225 (284)
                                    ....+++||++|+|+++|.|++++||++|+||++++|.++++||++|+|+++++|.++++||++++
T Consensus        83 --------------~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~v  148 (189)
T 3r1w_A           83 --------------PGGYPLIIGDDVTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFV  148 (189)
T ss_dssp             --------------TTCBCEEECSSEEECTTCEEESCEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEE
T ss_pred             --------------CCCCCeEECCCCEECCCCEEeCcEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCE
Confidence                          022369999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCceeeccCCHHHHhhhhhhHHHHHHHHHHHHhc
Q 039842          226 WAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSE  262 (284)
Q Consensus       226 v~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (284)
                      ++|+||++++.+++++..++....+.|.++.+.|.++
T Consensus       149 v~G~pa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (189)
T 3r1w_A          149 YMGTPAKKVRPITEKERSFFTYGAGNYVRLKDKHLAE  185 (189)
T ss_dssp             EETTTTEEEEECCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EECCccccccCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999988654

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.96  E-value=1.4e-28  Score=207.12  Aligned_cols=174  Identities=27%  Similarity=0.486  Sum_probs=153.1

Q ss_pred             eecCCCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeec
Q 039842           66 IPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLID  145 (284)
Q Consensus        66 ~~~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~  145 (284)
                      ..+....+.++++++|++++.|.+++.||+++.|++++.|.++.+++.||++|.|+++|.|+........          
T Consensus         9 ~~~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~----------   78 (187)
T 3r3r_A            9 RPYKNLFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSN----------   78 (187)
T ss_dssp             ECBTTBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTB----------
T ss_pred             HhhcccCcccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccC----------
Confidence            4556677899999999999999999999999999999999866446799999999999999754221100          


Q ss_pred             ccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842          146 LQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL  225 (284)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v  225 (284)
                                    ....+++||++|+|+++|.|++++||++|+||++++|.++++||++|+|+++++|.++++||++++
T Consensus        79 --------------~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~v  144 (187)
T 3r3r_A           79 --------------PHGNPLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYL  144 (187)
T ss_dssp             --------------C-CBCEEECSSCEECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEE
T ss_pred             --------------CCCCCeEECCCCEECCCCEEeCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcE
Confidence                          012469999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCceeeccCCHHHHhhhhhhHHHHHHHHHHHHhcc
Q 039842          226 WAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEF  263 (284)
Q Consensus       226 v~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (284)
                      ++|+||++++++.+++..+++.....|.++.+.|.+.+
T Consensus       145 v~G~pa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (187)
T 3r3r_A          145 YLGSPVKQIRPLSDAERSGLQYSANNYVKWKDDYLSQD  182 (187)
T ss_dssp             EETTTTEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCeEcCcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999998888888888888776544

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.96  E-value=1.6e-28  Score=204.65  Aligned_cols=170  Identities=34%  Similarity=0.548  Sum_probs=154.2

Q ss_pred             eeecCCCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeee
Q 039842           65 IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLI  144 (284)
Q Consensus        65 ~~~~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~  144 (284)
                      ++.+....+.++++++|+|++.+.+++.||+++.|++++.|.++...++||++|.|+++|+|.....             
T Consensus         3 ~~~~~~~~~~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~-------------   69 (173)
T 1v3w_A            3 IYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHG-------------   69 (173)
T ss_dssp             EECBTTBCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTT-------------
T ss_pred             eeccCCCCCEECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCC-------------
Confidence            4456677789999999999999999999999999999999986555699999999999999975421             


Q ss_pred             cccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCC
Q 039842          145 DLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGE  224 (284)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~  224 (284)
                                        .+++||++|.|++++.|++++||++||||.++.|.++++||++|+|+++++|.++++||+++
T Consensus        70 ------------------~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~  131 (173)
T 1v3w_A           70 ------------------YPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYS  131 (173)
T ss_dssp             ------------------BCEEECSSCEECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTE
T ss_pred             ------------------CCeEECCCCEECCCCEECCCEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCc
Confidence                              25899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCceeeccCCHHHHhhhhhhHHHHHHHHHHHHhcccc
Q 039842          225 LWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLP  265 (284)
Q Consensus       225 vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (284)
                      +++|+|+++++++++++..++....+.|.++.+.|.+.+++
T Consensus       132 ~v~G~pa~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~  172 (173)
T 1v3w_A          132 LVLGVPGKVVRQLTEEEIEWTKKNAEIYVELAEKHIKGRKR  172 (173)
T ss_dssp             EEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             EEECcCCEEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999888888888898888888776654

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.96  E-value=6.2e-28  Score=201.09  Aligned_cols=166  Identities=32%  Similarity=0.556  Sum_probs=150.1

Q ss_pred             eeecCCCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeee
Q 039842           65 IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLI  144 (284)
Q Consensus        65 ~~~~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~  144 (284)
                      ++++....+.++++++|+|++.|.+++.||++|.|++++.|.++...++||++|.|+++|+|.....             
T Consensus         5 ~~~~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~-------------   71 (173)
T 1xhd_A            5 IYPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQ-------------   71 (173)
T ss_dssp             EECBTTBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTT-------------
T ss_pred             eeecCCCCCEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCC-------------
Confidence            3445566788999999999999999999999999999999986555699999999999999975421             


Q ss_pred             cccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCC
Q 039842          145 DLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGE  224 (284)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~  224 (284)
                                        .+++||++|.|++++.|++++||++||||++++|.++++||++|+|+++++|.++++||+++
T Consensus        72 ------------------~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~  133 (173)
T 1xhd_A           72 ------------------YPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNT  133 (173)
T ss_dssp             ------------------CCEEECTTCEECTTCEEESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTE
T ss_pred             ------------------CCeEECCCCEECCCCEEeCCEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCC
Confidence                              25899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCceeeccCCHHHHhhhhhhHHHHHHHHHHHHh
Q 039842          225 LWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFS  261 (284)
Q Consensus       225 vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      +++|+||++++++++++..++......|.++.+.|.+
T Consensus       134 vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (173)
T 1xhd_A          134 LAFGRPAKVIRELTAEDRKDMERIRTQYVEKGQYYKS  170 (173)
T ss_dssp             EEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988888888888888776643

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.96  E-value=2.9e-28  Score=206.39  Aligned_cols=165  Identities=39%  Similarity=0.689  Sum_probs=148.8

Q ss_pred             eeecCCCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeee
Q 039842           65 IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLI  144 (284)
Q Consensus        65 ~~~~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~  144 (284)
                      ++.+....+.++++++|++++.|.+++.||++|.|++++.|.++..+++||++|.|+++|+|....+             
T Consensus        26 ~~~~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~-------------   92 (191)
T 3ixc_A           26 LVPYAGVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSM-------------   92 (191)
T ss_dssp             EECBTTBCCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----------------
T ss_pred             eecccCCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCC-------------
Confidence            3455667788999999999999999999999999999999986655689999999999999975432             


Q ss_pred             cccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCC
Q 039842          145 DLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGE  224 (284)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~  224 (284)
                                      . ++++||++|.|++++.+.+++||++|+||++++|.++++||++|+|+++++|.++++||+++
T Consensus        93 ----------------~-g~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~  155 (191)
T 3ixc_A           93 ----------------H-GDTVIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGE  155 (191)
T ss_dssp             ------------------CCEEECTTCEECTTCEECSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTE
T ss_pred             ----------------c-CCeEECCCCEECCCCEEECCEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCe
Confidence                            1 14899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCceeeccCCHHHHhhhhhhHHHHHHHHHHH
Q 039842          225 LWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSH  259 (284)
Q Consensus       225 vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (284)
                      ++.|+|+++++++++++..+++...+.|.++.+.|
T Consensus       156 ~v~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~~~  190 (191)
T 3ixc_A          156 LWAGRPAKFLRMMTEEEILYLQKSAENYIALSRGY  190 (191)
T ss_dssp             EEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEECcCceecccCCHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999988888888887765

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.96  E-value=2.4e-28  Score=207.26  Aligned_cols=177  Identities=15%  Similarity=0.109  Sum_probs=126.2

Q ss_pred             CCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccccc
Q 039842           70 QWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMS  149 (284)
Q Consensus        70 ~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~  149 (284)
                      +....|+++++|++++.|.++++||++|+|++++.|.++.++++||++|.|+++|+|+.........             
T Consensus        10 ~~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~-------------   76 (194)
T 3tv0_A           10 QKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITP-------------   76 (194)
T ss_dssp             --CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------------
T ss_pred             CCCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCccccccccccccc-------------
Confidence            3446799999999999999999999999999999999877789999999999999998654321110             


Q ss_pred             CCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEecc
Q 039842          150 CPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGN  229 (284)
Q Consensus       150 ~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~  229 (284)
                            ........+++||++++|+.++.++++.||++||||++++|+++++||++|+|+++++|.+++.||++++++|+
T Consensus        77 ------~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv~G~  150 (194)
T 3tv0_A           77 ------DTEDPEPKPMIIGTNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVIYGA  150 (194)
T ss_dssp             -------------CCEEECSSCEECTTCEECCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEEEST
T ss_pred             ------ccccCcCCceEECCcceEecceeEeeeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEEECC
Confidence                  00111234689999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             CceeeccCC-----HHHHhhhhhhHHHHHHHHHHHHhcccc
Q 039842          230 PARFVRTLT-----HEETLEIPKLAVAINDLSKSHFSEFLP  265 (284)
Q Consensus       230 pa~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (284)
                      |++......     ..+++++++..+.|.++.+.++...+|
T Consensus       151 pa~~~~~~~~~~~~~~~~~~l~k~~p~y~~l~k~~k~~~~~  191 (194)
T 3tv0_A          151 DCLRRVQTERPQPQTLQLDFLMKILPNYHHLKKTMKGSSTP  191 (194)
T ss_dssp             TCCEEEECCCCCC----------------------------
T ss_pred             CcEEeecccCcccchHHHHHHHHHhHHHHHHHHHhhcccCc
Confidence            998553322     235566777777777777666554444

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.93  E-value=1.4e-25  Score=208.36  Aligned_cols=54  Identities=15%  Similarity=0.231  Sum_probs=38.3

Q ss_pred             ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee-CCCCEEeccCceeecc
Q 039842          181 SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI-PTGELWAGNPARFVRT  236 (284)
Q Consensus       181 ~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I-~~~~vv~G~pa~~~~~  236 (284)
                      +++|||+||||.++.|.++++||++++|+++++|.  ++| |+++++.|+|++.+++
T Consensus       280 ~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~V~--k~v~~~~~~~~G~Pa~~~~~  334 (372)
T 3pmo_A          280 SAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTMVT--RSITEPGSYSSGTAMQPAAE  334 (372)
T ss_dssp             TCEECSSCEECTTCEECSSCEECSSEEECTTCEEC--SCBCSCEEECCSCCCCCHHH
T ss_pred             CCEECCCeEEeCCCEECCCCEECCCCEEeeCCEEc--cCcCCCCcEEEeCchHHHHH
Confidence            36677777777777777777777777777777777  666 6777777777776554

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.92  E-value=2.7e-25  Score=197.66  Aligned_cols=203  Identities=14%  Similarity=0.161  Sum_probs=116.8

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecC-----------CCcEEECCCCEECCCCEEecCCCC-Ccccccce
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD-----------LNKITVGFCSNVQERCVLHAAWNS-PYRFVGFV  140 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~-----------~~~v~IG~~~~I~~~~~I~~~~~~-~~~~~g~~  140 (284)
                      ..|++++.|++++.|++++.||++|.|+++++|..+           ..++.||++|.|+++++|...... ....+|..
T Consensus        21 ~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~  100 (273)
T 3fs8_A           21 VTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTIIGDNFQTGHK  100 (273)
T ss_dssp             EEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSCEECTTCEECSS
T ss_pred             CEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCCCEECCCCEECCc
Confidence            356666666666666666777777777777766432           123666666666666666433210 11111111


Q ss_pred             eeeecccccCCCCCccccccCCcceEECCCCEECCCceee-----------------------------ccEECCCCEEC
Q 039842          141 SLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR-----------------------------SCTIEPECIIG  191 (284)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~-----------------------------~v~Igd~v~IG  191 (284)
                      ..+.+..................+++||++|.|++++.|.                             +++|||+||||
T Consensus       101 ~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~v~Ig~~~~IG  180 (273)
T 3fs8_A          101 VTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIA  180 (273)
T ss_dssp             CEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTTCEECTTCEECTTCEECCCSSSSCSCCCCCEECTTCEEC
T ss_pred             eEECCCCEECCCCEECccceeCCceEECCceEECCCCEECCCceeCCceeecCceEecCCCCCcccccCCcEECCCeEEc
Confidence            1111110000000000111112235555555555555442                             48999999999


Q ss_pred             CCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHHHHhhhhhhHHHHHHHHHHHHhccc----cch
Q 039842          192 QHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFL----PYS  267 (284)
Q Consensus       192 ~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  267 (284)
                      .+++|.++++||++|+|+++++|.  ++||++++++|+||++++.+.....+..++.   +..+...|.+.+.    .|.
T Consensus       181 ~~~~I~~g~~IG~~~~IgagsvV~--~dvp~~~~~~G~PA~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  255 (273)
T 3fs8_A          181 ARSVVLPGIHINEDALVGAGAVVT--KDVPKETVVVGNPAREICSIRKIKNKITGEQ---VYPWRYTFKRGMPWEETDYD  255 (273)
T ss_dssp             TTCEECTTCEECTTCEECTTCEEC--SCBCTTEEEEETTEEEEEEGGGCBCTTTCCB---CCSGGGTCCTTSTTTTSCHH
T ss_pred             CCCEEcCCCEECCCCEECCCCEEC--ccCCCCcEEEecCcEEecccchhhhhhcccc---cchhhhhhccCCchhhhhHH
Confidence            999999999999999999999999  8999999999999999987654332222211   1122222333344    799


Q ss_pred             HHHHHHHHHHHHh
Q 039842          268 TVYLEVEKFKKSL  280 (284)
Q Consensus       268 ~~~~~~~~~~~~~  280 (284)
                      +||.+..++++++
T Consensus       256 ~w~~~~~~~~~~~  268 (273)
T 3fs8_A          256 TWIKNISIENLEH  268 (273)
T ss_dssp             HHHHHC-------
T ss_pred             HHHhhcchhhhhh
Confidence            9999888877765

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.92  E-value=2.5e-25  Score=204.51  Aligned_cols=32  Identities=13%  Similarity=0.163  Sum_probs=27.1

Q ss_pred             ChhhhhhhHhhhhhhcccchhhhhhhhhhhhhhc
Q 039842            1 MAALARITRRALTTQLSHGHVIRRAFSTSAAATA   34 (284)
Q Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   34 (284)
                      +++|+.|.+.+|+|+.+.  +|+..+..+.+++.
T Consensus        28 ~~~~~~a~~~~i~fl~~~--~~~~~~~~~~a~~~   59 (341)
T 3eh0_A           28 VASMQSAQTGHITFMVNP--KYREHLGLCQASAV   59 (341)
T ss_dssp             ECCTTTCCTTEEEECCCS--SGGGGGGGCCCSEE
T ss_pred             eeccccCCCCeEEEeCCH--HHHHHHhhCCCCEE
Confidence            367899999999999999  99998888776654

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.92  E-value=1.5e-24  Score=185.25  Aligned_cols=133  Identities=15%  Similarity=0.254  Sum_probs=121.3

Q ss_pred             CCceeCCCcEEcCCcEEec--ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc
Q 039842           71 WVPKVAVDAYVAPNVVLAG--QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM  148 (284)
Q Consensus        71 ~~~~i~~~~~I~~~a~i~~--~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~  148 (284)
                      .+..+++++.|++++.|.+  ++.||++|.|++++.|.++   ++||++|.|+++|+|....                  
T Consensus        31 ~~~~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~---v~IG~~~~I~~~~~I~~~~------------------   89 (205)
T 3vbi_A           31 GFLSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGK---VTIGSYSHIAAYTALYGGE------------------   89 (205)
T ss_dssp             CCSEECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEE---EEECSSEEECTTCEEEEEE------------------
T ss_pred             CCeEECCCCEECCCeEEccCCeeEECCCCEECCCCEEccc---eEECCCCEECCCeEEEcCC------------------
Confidence            4567999999999999987  9999999999999999765   9999999999999996532                  


Q ss_pred             cCCCCCccccccCCcceEECCCCEECCCcee--------------------------eccEECCCCEECCCcEEcCCCEE
Q 039842          149 SCPRSNSLYIAWLPAETSIERFVTIGAYCSL--------------------------RSCTIEPECIIGQHSILMEGSMV  202 (284)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I--------------------------~~v~Igd~v~IG~~s~I~~gv~I  202 (284)
                                    ++++||++|.|+++|+|                          .+++|||+||||++|+|.++++|
T Consensus        90 --------------~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~I  155 (205)
T 3vbi_A           90 --------------VGIEMYDFANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVI  155 (205)
T ss_dssp             --------------EEEEECTTCEECTTCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEE
T ss_pred             --------------ccEEECCCCEECCCcEEEeCCCCcccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEE
Confidence                          14899999999999999                          46999999999999999999999


Q ss_pred             CCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842          203 ETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       203 g~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      |++|+|+++++|.  .++|++++++|+||++++++.++
T Consensus       156 g~~~~Ig~gsvV~--~~v~~~~v~~G~Pa~~i~~~~~~  191 (205)
T 3vbi_A          156 GEGVAVGAMSMVK--ESLDDWYIYVGVPVRKIKARKRK  191 (205)
T ss_dssp             CTTCEECTTCEEC--SCBCTTEEEETTTTEEEEECCCH
T ss_pred             CCCCEEcCCCEEC--CccCCCeEEEccCCEEeeechhh
Confidence            9999999999999  77999999999999999887653

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.92  E-value=2.8e-25  Score=205.27  Aligned_cols=219  Identities=14%  Similarity=0.049  Sum_probs=109.2

Q ss_pred             ChhhhhhhHhhhhhhcccchhhhhhhhhhhhhhccccccccccCCCCCCCCcccccccccccceeeecCCCC---ceeCC
Q 039842            1 MAALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYRGQRQIIPLGQWV---PKVAV   77 (284)
Q Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~   77 (284)
                      +++|+.|.+.+|+|+.++  +|+..+..+.++++.-........+  .......+..+|..+..+..++.+.   +.+++
T Consensus        32 ~~~~~~a~~~~~~f~~~~--~~~~~~~~~~a~~~i~~~~~~~~~~--~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~i~p  107 (357)
T 4e79_A           32 LASLENAEVNHLTFVNGE--KHLDQAKVSRAGAYIVTAALKEHLP--EKDNFIIVDNPYLAFAILTHVFDKKISSTGIES  107 (357)
T ss_dssp             ECCTTTCCTTEEEECCSG--GGHHHHHTCCCSEEEECHHHHHTCT--TCCEEEECSCHHHHHHHHHTTSSCCCCCCEECT
T ss_pred             ecChhcCCCCcEEEeCCh--hHHHHHhcCCCEEEEEcHHHhhhcc--CCccEEEECCHHHHHHHHHHHhccccccCeeCC
Confidence            478899999999999999  9999999888776622111100000  0011222333343332222221110   23343


Q ss_pred             CcEEc------------CCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeec
Q 039842           78 DAYVA------------PNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLID  145 (284)
Q Consensus        78 ~~~I~------------~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~  145 (284)
                      +++|+            +++.|++++.||++|+|+++++|..+   ++||++|.|+++++|+...     .+|..+.+..
T Consensus       108 ~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~~~I~~~~-----~IG~~~~I~~  179 (357)
T 4e79_A          108 TARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDN---VEVGKDCFIDSYVTITGSS-----KLRDRVRIHS  179 (357)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT---CEECSSCEECTTCEECTTC-----EECSSCEECT
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCC---CEECCCCEECCCcEEeccc-----EEEeEeeccC
Confidence            33333            33334444444444444444444322   4444444444444443221     1222222221


Q ss_pred             ccccCCC------CCc-cccccCCcceEECCCCEECCCcee-----------------------eccEECCCCEECCCcE
Q 039842          146 LQMSCPR------SNS-LYIAWLPAETSIERFVTIGAYCSL-----------------------RSCTIEPECIIGQHSI  195 (284)
Q Consensus       146 ~~~~~~~------~~~-~~~~~~~~~v~Ig~~v~Ig~~~~I-----------------------~~v~Igd~v~IG~~s~  195 (284)
                      .......      ... .......++++||++|+||++++|                       ++++||++|+|++++.
T Consensus       180 g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~  259 (357)
T 4e79_A          180 STVIGGEGFGFAPYQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGALDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCG  259 (357)
T ss_dssp             TCEESCCCCCEEEETTEEEECCCCCCEEECTTCEECTTCEECCCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             CeEECcccCcccccCCceeeccccCcEEEcCCcEEccccEEeccccCCccccCCcccCCCcccCCCeEECCCCEECCCCE
Confidence            1110000      000 000001124666666666666655                       2356666666666666


Q ss_pred             EcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCc
Q 039842          196 LMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPA  231 (284)
Q Consensus       196 I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa  231 (284)
                      |.++++||++|+|+++++|.++.+|++++++.|.|.
T Consensus       260 i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~  295 (357)
T 4e79_A          260 IAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSM  295 (357)
T ss_dssp             ECTTCEECTTCEECTTCEECSSCEECSSEEECTTCE
T ss_pred             ECCCcEECCCCEECcCCEECCCeEECCCCEEeecCE
Confidence            777777777777777777777777777777766533

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.92  E-value=3.9e-24  Score=183.83  Aligned_cols=166  Identities=22%  Similarity=0.313  Sum_probs=132.2

Q ss_pred             CCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCC-cEEECCCCEECCCCEEecCCCCCcccccceeeeecccc
Q 039842           70 QWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN-KITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM  148 (284)
Q Consensus        70 ~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~-~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~  148 (284)
                      ...+.++++++|++++.+.+++.||++|.|++++.|.++.+ .++||++|.|+++|+|....+..  ..|      +.  
T Consensus        37 ~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~--~ig------~~--  106 (213)
T 3kwd_A           37 LAEPEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGR--VIG------DD--  106 (213)
T ss_dssp             CCCCEECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCC--EEC------TT--
T ss_pred             CCCCcCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCc--eec------cC--
Confidence            34568999999999999999999999999999999986533 69999999999999998643311  001      00  


Q ss_pred             cCCCCCccccccCCcceEECCCCEECCCceeec-cEECCCCEECCCcEEcCCCEECCCCEEcCCCee-----CCCCeeCC
Q 039842          149 SCPRSNSLYIAWLPAETSIERFVTIGAYCSLRS-CTIEPECIIGQHSILMEGSMVETHAILEAGSVL-----PPGRRIPT  222 (284)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~-v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V-----~~~~~I~~  222 (284)
                                 ....+++||++|+|++++.|.+ ++|||+||||++++|.+ ++||++|+|+++++|     ++++.||+
T Consensus       107 -----------~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V~~~~i~~~~~v~~  174 (213)
T 3kwd_A          107 -----------GQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLIQDVEIPPGKYVPS  174 (213)
T ss_dssp             -----------SCEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECSSCEEESCEECTTBEECT
T ss_pred             -----------CcccceEECCCcEECCCcEEcCCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEECCcEeCCCCEECC
Confidence                       0112589999999999999987 99999999999999986 999999999999998     77799999


Q ss_pred             CCEEe-ccCceeeccCCHHHHhhhhhhHHHHHHHHH
Q 039842          223 GELWA-GNPARFVRTLTHEETLEIPKLAVAINDLSK  257 (284)
Q Consensus       223 ~~vv~-G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (284)
                      ++++. |.|++.++++++++..+.++....+.++.+
T Consensus       175 ~~vv~~g~pa~~i~~~~~~~~~~~~~v~~~~~~l~~  210 (213)
T 3kwd_A          175 GMVITTQQQADRLPNVEESDIHFAQHVVGINEALLS  210 (213)
T ss_dssp             TCEECSHHHHTTCCBCCHHHHHHHHHHC--------
T ss_pred             CcEEcCCCCccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            99999 999999999888876665555544444443

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.91  E-value=2.2e-23  Score=183.22  Aligned_cols=179  Identities=23%  Similarity=0.284  Sum_probs=136.5

Q ss_pred             CCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCC-cEEECCCCEECCCCEEecCCCCCcccccceeeeecccc
Q 039842           70 QWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN-KITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM  148 (284)
Q Consensus        70 ~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~-~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~  148 (284)
                      ...+.++++++|+|++.|.+++.||++++|+++++|.++.. .++||++|.|+++|+|+.......  .|  +.+.+..+
T Consensus        57 ~~~~~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~--~g--~~~~~~~~  132 (247)
T 1qre_A           57 PSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINE--EG--EPIEDNIV  132 (247)
T ss_dssp             CCCCEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCT--TS--CBCGGGCE
T ss_pred             CCCcEECCCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccc--cC--ccccccee
Confidence            45678999999999999999999999999999999986643 689999999999999986532100  00  00000000


Q ss_pred             cCCCCCccccccCCcceEECCCCEECCCceeec-cEECCCCEECCCcEEcCCCEECCCCEEcCCCee-----CCCCeeCC
Q 039842          149 SCPRSNSLYIAWLPAETSIERFVTIGAYCSLRS-CTIEPECIIGQHSILMEGSMVETHAILEAGSVL-----PPGRRIPT  222 (284)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~-v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V-----~~~~~I~~  222 (284)
                              .......+++||++|+|+++|.|.+ ++||++|+||++++|.+ ++||++|+|+++++|     ++++.|++
T Consensus       133 --------~~~~~~~~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV~~~~I~~~~~v~~  203 (247)
T 1qre_A          133 --------EVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPA  203 (247)
T ss_dssp             --------EETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEESCEECTTBEECT
T ss_pred             --------eccCccCceEECCCCEECCCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCCEECCeEeCCCCEECC
Confidence                    0000113589999999999999988 99999999999999988 999999999999999     45566666


Q ss_pred             CCEEecc-CceeeccCCHHH--HhhhhhhHHHHHHHHHHHHh
Q 039842          223 GELWAGN-PARFVRTLTHEE--TLEIPKLAVAINDLSKSHFS  261 (284)
Q Consensus       223 ~~vv~G~-pa~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  261 (284)
                      ++++.+. |++.++++.++.  ..+.++....|.++.+.|..
T Consensus       204 g~vv~~~~pa~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  245 (247)
T 1qre_A          204 GMVVTSQAEADKLPEVTDDYAYSHTNEAVVYVNVHLAEGYKE  245 (247)
T ss_dssp             TCEECSHHHHHTCCBCCTTSTTTTHHHHHHHHHHHHHHHHHT
T ss_pred             CCEEecCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhc
Confidence            6666665 888888887766  66667777777777766643

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.91  E-value=1.9e-23  Score=184.79  Aligned_cols=148  Identities=12%  Similarity=0.132  Sum_probs=108.3

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEe---------cC-CCcEEECCCCEECCCCEEecCCCC-Cccccccee
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLR---------GD-LNKITVGFCSNVQERCVLHAAWNS-PYRFVGFVS  141 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~---------g~-~~~v~IG~~~~I~~~~~I~~~~~~-~~~~~g~~~  141 (284)
                      ..++++++|++++.|.++++||++|.|++++.|.         |+ ...++||++|.|+++|.|+..... ....+|..+
T Consensus        31 v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~IG~~~  110 (259)
T 3hsq_A           31 VSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDSPTVIGNKN  110 (259)
T ss_dssp             CEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTTBCEEECSSC
T ss_pred             CEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCCccCCCcEEECCCc
Confidence            4566777777777777777777777777777772         22 345777777777777777654431 122334333


Q ss_pred             eeecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842          142 LLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI  220 (284)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I  220 (284)
                      .+...            ....++++||++|+|+.++.+ ++++|||+||||++++|.++++||++++|+++++|.  ++|
T Consensus       111 ~I~~~------------~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~Vg~~s~V~--~dv  176 (259)
T 3hsq_A          111 YFMGN------------SHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYSMVAGLAKVV--QDV  176 (259)
T ss_dssp             EECTT------------CEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEECTTCEECSSEEEC--SBB
T ss_pred             EEcCC------------cEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCCEECCCCEECCCCEEc--ccC
Confidence            33322            112345677777777777777 469999999999999999999999999999999999  899


Q ss_pred             CCCCEEeccCceee
Q 039842          221 PTGELWAGNPARFV  234 (284)
Q Consensus       221 ~~~~vv~G~pa~~~  234 (284)
                      |++++++|+||+++
T Consensus       177 p~~~~~~G~pa~~~  190 (259)
T 3hsq_A          177 PPYSTVDGNPSTVV  190 (259)
T ss_dssp             CTTEEEETTTTEEE
T ss_pred             CCCcEEeccCcEEE
Confidence            99999999999987

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.90  E-value=8.9e-23  Score=181.24  Aligned_cols=147  Identities=12%  Similarity=0.199  Sum_probs=106.7

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEec---------CC-CcEEECCCCEECCCCEEecCCCCC--cccccce
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRG---------DL-NKITVGFCSNVQERCVLHAAWNSP--YRFVGFV  140 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g---------~~-~~v~IG~~~~I~~~~~I~~~~~~~--~~~~g~~  140 (284)
                      ..++++++|++++.|.++++||++|.|++++.|.+         +. ..++||++|.|+++|.|+......  ...+|.+
T Consensus        35 v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~  114 (266)
T 3r0s_A           35 AKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDGFTRIGDN  114 (266)
T ss_dssp             CEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEECCCTTTTSEEEECTT
T ss_pred             CEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecCCcccCCccEEECCC
Confidence            35666666666666666777777777777777731         11 347777777777777776543311  1233433


Q ss_pred             eeeecccccCCCCCccccccCCcceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCe
Q 039842          141 SLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRR  219 (284)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~  219 (284)
                      +.+....            ...++++||++|+|+.++.+. +++|||+||||++++|.++++||++++|+++++|.  ++
T Consensus       115 ~~I~~~~------------~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~a~Vg~~s~V~--~d  180 (266)
T 3r0s_A          115 AFIMAYC------------HIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGCMIAGASALS--QD  180 (266)
T ss_dssp             CEECTTC------------EECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCBBC--SC
T ss_pred             ceeCCcc------------eEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCcEECCCCEEccCCeEe--cc
Confidence            3333221            122457888888888888885 49999999999999999999999999999999999  89


Q ss_pred             eCCCCEEeccCcee
Q 039842          220 IPTGELWAGNPARF  233 (284)
Q Consensus       220 I~~~~vv~G~pa~~  233 (284)
                      ||++++++|+||++
T Consensus       181 vp~~~~~~G~Pa~~  194 (266)
T 3r0s_A          181 IVPFCLAEGNRASI  194 (266)
T ss_dssp             BCTTEEEEEBTEEE
T ss_pred             cCCCeEEeccCcEE
Confidence            99999999999998

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.90  E-value=1.9e-22  Score=178.81  Aligned_cols=147  Identities=15%  Similarity=0.271  Sum_probs=103.4

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEe---------cCCCcEEECCCCEECCCCEEecCCCCC--cccccceee
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLR---------GDLNKITVGFCSNVQERCVLHAAWNSP--YRFVGFVSL  142 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~---------g~~~~v~IG~~~~I~~~~~I~~~~~~~--~~~~g~~~~  142 (284)
                      .|++++.|++++.|.++++||++|.|++++.|.         |+...++||++|.|+++|.|+.+....  ...+|..+.
T Consensus        39 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~  118 (265)
T 4e6u_A           39 TIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNL  118 (265)
T ss_dssp             EECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCE
T ss_pred             EECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCceEECcccccCCCceEEccCcE
Confidence            455566666666666666666666666666662         222346666666666666665443211  122333333


Q ss_pred             eecccccCCCCCccccccCCcceEECCCCEECCCceeec-cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842          143 LIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRS-CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP  221 (284)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~-v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~  221 (284)
                      +...            ....++++||++|+|+.++.+.+ ++|||+||||++++|.++++||++++|+++++|.  ++||
T Consensus       119 I~~~------------~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~i~~~svV~--~dvp  184 (265)
T 4e6u_A          119 LMVN------------THIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGASLIL--KDVP  184 (265)
T ss_dssp             ECTT------------CEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEEC--SBBC
T ss_pred             Eeee------------eEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEECCCCEEcCCCEEc--ccCC
Confidence            3221            11224577888888888888854 9999999999999999999999999999999999  8999


Q ss_pred             CCCEEeccCceee
Q 039842          222 TGELWAGNPARFV  234 (284)
Q Consensus       222 ~~~vv~G~pa~~~  234 (284)
                      ++++++|+||+++
T Consensus       185 ~~~~~~G~pa~~~  197 (265)
T 4e6u_A          185 AYVMASGNPAHAF  197 (265)
T ss_dssp             TTEEEEETTEEEE
T ss_pred             CCeEEEccCCEEe
Confidence            9999999999987

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.90  E-value=1.8e-22  Score=179.67  Aligned_cols=148  Identities=18%  Similarity=0.253  Sum_probs=103.9

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEe---------cCCCcEEECCCCEECCCCEEecCCCCC--ccccccee
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLR---------GDLNKITVGFCSNVQERCVLHAAWNSP--YRFVGFVS  141 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~---------g~~~~v~IG~~~~I~~~~~I~~~~~~~--~~~~g~~~  141 (284)
                      ..|+++++|++++.|.++++||++|.|++++.|.         |+...++||++|.|+++|+|+......  ...+|..+
T Consensus        32 v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~  111 (270)
T 1j2z_A           32 VKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKN  111 (270)
T ss_dssp             CEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEECCCCTTTTSEEEECSSC
T ss_pred             CEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEECCCeEEcCCeecCCccEEECCCc
Confidence            3556666666666666666666666666666662         222446666777777766666543321  22333333


Q ss_pred             eeecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842          142 LLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI  220 (284)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I  220 (284)
                      .+...            ....++++||++|+|+.++.+ ++++|||+|+||++++|.++++||++|+|+++++|.  .+|
T Consensus       112 ~I~~~------------~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~IG~~a~Ig~~s~V~--~dv  177 (270)
T 1j2z_A          112 LLMAY------------VHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALG--KDV  177 (270)
T ss_dssp             EECTT------------CEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEEC--SBB
T ss_pred             EECcc------------cccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCcEeCCceEEecCcEec--ccC
Confidence            33221            112245677777777777766 569999999999999999999999999999999999  899


Q ss_pred             CCCCEEeccCceee
Q 039842          221 PTGELWAGNPARFV  234 (284)
Q Consensus       221 ~~~~vv~G~pa~~~  234 (284)
                      |+++++.|+||+++
T Consensus       178 p~~~~~~G~pa~~~  191 (270)
T 1j2z_A          178 PPYCTVEGNRAFIR  191 (270)
T ss_dssp             CTTEEEETTBTEEE
T ss_pred             CCCeEEecCCcEEe
Confidence            99999999999998

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.90  E-value=3.8e-23  Score=174.58  Aligned_cols=128  Identities=17%  Similarity=0.291  Sum_probs=96.4

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS  153 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (284)
                      .+++++.|.+++.|.+++.||++|.|++++.|..+   ++||++|.|++++.|+                          
T Consensus        17 ~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~---~~IG~~~~I~~~~~I~--------------------------   67 (192)
T 3mqg_A           17 RIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNR---VRIGNRVKIQNNVSVY--------------------------   67 (192)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECSS---CEECSSCEECTTCEEC--------------------------
T ss_pred             EECCCCEECCCCEECCCcEECCCCEECCCEEECCc---eEECCCcEEcCCcEEe--------------------------
Confidence            34555555555555555555555555555555322   5555555555555553                          


Q ss_pred             CccccccCCcceEECCCCEECCCcee----------------eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCC
Q 039842          154 NSLYIAWLPAETSIERFVTIGAYCSL----------------RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPG  217 (284)
Q Consensus       154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I----------------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~  217 (284)
                               .+++||+++.||+++.+                .+++||++||||++++|.++++||++|+|+++++|.  
T Consensus        68 ---------~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~--  136 (192)
T 3mqg_A           68 ---------DNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVN--  136 (192)
T ss_dssp             ---------TTEEECTTCEECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC--
T ss_pred             ---------CCCEECCCCEECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEEC--
Confidence                     24788888888888777                458999999999999999999999999999999999  


Q ss_pred             CeeCCCCEEeccCceeeccCCHHH
Q 039842          218 RRIPTGELWAGNPARFVRTLTHEE  241 (284)
Q Consensus       218 ~~I~~~~vv~G~pa~~~~~~~~~~  241 (284)
                      +++|++++++|+||++++.+.+..
T Consensus       137 ~~vp~~~v~~G~PAk~i~~~~~~~  160 (192)
T 3mqg_A          137 KDVPDFALVVGVPARQIGWMSRHG  160 (192)
T ss_dssp             SCBCTTEEEETTTTEEEEEBCTTS
T ss_pred             cccCCCCEEEccCCEEEEeecccc
Confidence            899999999999999998776543

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.90  E-value=3.3e-22  Score=179.13  Aligned_cols=70  Identities=21%  Similarity=0.244  Sum_probs=63.4

Q ss_pred             cceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          163 AETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       163 ~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                      .+++||++|+|+.++.+. +++|||+||||++++|.++++||++++|+++++|.  ++||++++++|+||+++
T Consensus       142 ~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~vvg~~s~V~--~dvp~~~~~~G~pa~~~  212 (283)
T 4eqy_A          142 HDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHSMLGGASALV--QDIPPFVIAAGNKAEPH  212 (283)
T ss_dssp             TTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC--SBBCTTEEEETBTTEEE
T ss_pred             CCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEECCCcEECCCCeEe--cccCCCcEEeccCcEEe
Confidence            457778888888888775 49999999999999999999999999999999999  89999999999999987

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.90  E-value=4.9e-22  Score=175.82  Aligned_cols=70  Identities=14%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             ceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeec
Q 039842          164 ETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVR  235 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~  235 (284)
                      +++||++++|+.++.+ ++++|||+||||.++.|.++++||++|+|+++++|.  +++|++++++|+|+++..
T Consensus       126 ~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~~~~ig~~s~V~--~~v~~~~~~~G~pa~~~~  196 (262)
T 2qia_A          126 DCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVA--QDVPPYVIAQGNHATPFG  196 (262)
T ss_dssp             TCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEEC--SBBCTTEEEEEBTEEEEE
T ss_pred             CCEECCCeEECCcccccCCcEECCCcEEccCCEECCCCEECCCCEEccCCEEC--CcCCCCeEEeccCceEec
Confidence            4555555556555555 358999999999999999999999999999999999  899999999999999873

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.90  E-value=4.9e-22  Score=179.81  Aligned_cols=185  Identities=13%  Similarity=0.121  Sum_probs=105.7

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecC-CCcEEECCCCEECCCCEEecCCCCC--------cccccceeeee
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD-LNKITVGFCSNVQERCVLHAAWNSP--------YRFVGFVSLLI  144 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~-~~~v~IG~~~~I~~~~~I~~~~~~~--------~~~~g~~~~~~  144 (284)
                      .|++++.|++++.|.++++||++|.|+++++|..+ .+.++||++|.|+++++|+...++.        .-.+|..+.+.
T Consensus        39 ~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~  118 (305)
T 3t57_A           39 KLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIR  118 (305)
T ss_dssp             EECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCEEEECCCCTTCCTTCCEEEEECSSCEEC
T ss_pred             EECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECCccEeCccccccceecCCCceEEECCCcccC
Confidence            45555555555555566666666666666666421 1235566666666666665432210        01223222222


Q ss_pred             cccccCCCC------Cccc------cccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCC
Q 039842          145 DLQMSCPRS------NSLY------IAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAG  211 (284)
Q Consensus       145 ~~~~~~~~~------~~~~------~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~  211 (284)
                      +........      ..+.      .....++++||++|.|+.++.+ .+++|||+||||.++.|.++++||++|+|+++
T Consensus       119 ~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~g  198 (305)
T 3t57_A          119 EFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVHQFCHIGSFAFIGGG  198 (305)
T ss_dssp             TTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTT
T ss_pred             ceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccCCCCEECCceEEcCCCEEcCCeEECCCCEEcCC
Confidence            211110000      0000      0111123334444444444444 35899999999999999999999999999999


Q ss_pred             CeeCCCCeeCCCCEEeccCceeeccCCHHHHhhhhhhHHHHHHHHHHHHh
Q 039842          212 SVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFS  261 (284)
Q Consensus       212 s~V~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (284)
                      ++|.  ++||++++++|+||++.. +....+++.....+.+.++.+.|..
T Consensus       199 s~V~--~dvp~~~~~~G~Pa~~~~-~n~~g~~r~~~~~~~~~~l~~~y~~  245 (305)
T 3t57_A          199 SVVS--QDVPKYMMVAGERAELRG-LNLEGLRRNGFTMSEMKSLRAAYRK  245 (305)
T ss_dssp             CEEC--SBBCTTEEEETTBTEEEE-ECHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CeEc--ccCCCCeEEecCCcEEec-cchhheeecCCCHHHHHHHHHHHHH
Confidence            9999  789999999999999853 3333444433444455555554433

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.88  E-value=5.2e-23  Score=174.69  Aligned_cols=134  Identities=20%  Similarity=0.316  Sum_probs=110.3

Q ss_pred             CCCceeCCCcEEcCC--cEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccc
Q 039842           70 QWVPKVAVDAYVAPN--VVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ  147 (284)
Q Consensus        70 ~~~~~i~~~~~I~~~--a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~  147 (284)
                      ..++.++++++|.++  +.++.++.||++++|+++++|. +...++||++|.|+++|.|.+..+.               
T Consensus        54 ~~~~~ig~~~~I~~p~~~~ig~~v~IG~~~~I~~~~~i~-~~~~i~IG~~~~Ig~~~~I~~~~~~---------------  117 (195)
T 3nz2_A           54 ELFGHLGHKSCVQPPFHCEFGKTIRIGDHTFINMNVVML-DGAPITIGDHVLIGPSTQFYTASHS---------------  117 (195)
T ss_dssp             HHSSEECTTCEECSSEEESCSTTEEECTTCEECTTEEEE-CSSCEEECTTCEECTTCEEECEECC---------------
T ss_pred             HHHHhcCCCcEEcCCeEEEeCCCeEECCCcEECcCCEEe-cCceEEECCCCEECCCCEEecCCCC---------------
Confidence            445678999999995  5578899999999999999996 6677999999999999999875442               


Q ss_pred             ccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842          148 MSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW  226 (284)
Q Consensus       148 ~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv  226 (284)
                                          .+......++.+ ++++|||+||||++|+|.++++||++|+|+++++|.  ++||+++++
T Consensus       118 --------------------~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~--~dvp~~~v~  175 (195)
T 3nz2_A          118 --------------------LDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVN--QDVPPDTLV  175 (195)
T ss_dssp             --------------------SSGGGTTTCCCEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC--SCBCSSEEE
T ss_pred             --------------------cccccccccceecCCeEECCCCEEcCCCEECCCCEECCCCEECCCCEEc--cccCCCcEE
Confidence                                111122222222 567999999999999999999999999999999999  889999999


Q ss_pred             eccCceeeccCCHHH
Q 039842          227 AGNPARFVRTLTHEE  241 (284)
Q Consensus       227 ~G~pa~~~~~~~~~~  241 (284)
                      +|+||++++++.+.+
T Consensus       176 ~G~Pa~~i~~~~~~~  190 (195)
T 3nz2_A          176 GGTPARILRSLKDPA  190 (195)
T ss_dssp             ETTTTEEEEECC---
T ss_pred             EccCCEEecccChHh
Confidence            999999999987654

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.88  E-value=5.2e-22  Score=173.57  Aligned_cols=127  Identities=22%  Similarity=0.426  Sum_probs=114.2

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      .++++.|+|++.|.+++.||++|.|++++.|.++   ++||++|.|+.+++|+.                          
T Consensus        88 ~~~~~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~---~~IG~~~~I~~~~~I~~--------------------------  138 (240)
T 3r8y_A           88 KGIKARIEPGAIIRDHVEIGDNAVIMMNATINIG---AVIGEGSMIDMNAVLGG--------------------------  138 (240)
T ss_dssp             TTCSSEECTTCEEBSSCEECTTCEECTTCEECTT---CEECTTCEECTTCEECT--------------------------
T ss_pred             cCCCCEECCCCEECCCcEECCCCEECCCCEECCC---CEECCCCEECCCCEECC--------------------------
Confidence            4667899999999999999999999999999655   89999999999999853                          


Q ss_pred             ccccccCCcceEECCCCEECCCceeec---------cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSLRS---------CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL  225 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~---------v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v  225 (284)
                               +++||++|.|++++.+.+         ++||++|+||.+|+|.++++||++|+|+++++|.  .++|++++
T Consensus       139 ---------~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~--~~vp~~~v  207 (240)
T 3r8y_A          139 ---------RATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVT--EDVPPYTV  207 (240)
T ss_dssp             ---------TCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC--SCBCTTEE
T ss_pred             ---------CCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEC--CCcCCCcE
Confidence                     489999999999999976         9999999999999999999999999999999999  78999999


Q ss_pred             EeccCceeeccCCHHH
Q 039842          226 WAGNPARFVRTLTHEE  241 (284)
Q Consensus       226 v~G~pa~~~~~~~~~~  241 (284)
                      ++|+||++++.+++.+
T Consensus       208 ~~G~Pak~i~~~~~~~  223 (240)
T 3r8y_A          208 VAGTPARVIKEIDEKT  223 (240)
T ss_dssp             EEETTEEEEEEC----
T ss_pred             EEccCCEEEecCCHHH
Confidence            9999999999877654

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.87  E-value=5.7e-22  Score=167.53  Aligned_cols=130  Identities=17%  Similarity=0.244  Sum_probs=108.7

Q ss_pred             CCceeCC-CcEEcCCcEE--ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccc
Q 039842           71 WVPKVAV-DAYVAPNVVL--AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ  147 (284)
Q Consensus        71 ~~~~i~~-~~~I~~~a~i--~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~  147 (284)
                      .++.+++ +++|.+++.+  +.++.||++++|+++++|. +...++||++|.|+++|.|.+..+.               
T Consensus        56 ~~~~~~~~~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~-~~~~v~IG~~~~Ig~~~~I~~~~~~---------------  119 (190)
T 3hjj_A           56 LLGSSADGKAQINPDFRCDYGYNIHVGKSFFANFNCVIL-DVCEVRIGDHCMFAPGVHIYTATHP---------------  119 (190)
T ss_dssp             HSSEESSSCCEECSSCEESSSTTEEECTTCEECTTCEEE-CSSCEEECTTCEECTTCEEECEECC---------------
T ss_pred             HhhhcCCCCcEECCCEEEEeCCceEECCceeeCCCeEEE-eCCCeEECCceEEcCCcEEecCCcc---------------
Confidence            3456788 8999999887  7799999999999999996 6667999999999999999865431               


Q ss_pred             ccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842          148 MSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW  226 (284)
Q Consensus       148 ~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv  226 (284)
                                          ++.+....++.+ ++++|||+||||++|+|.++++||++|+|+++++|.  ++||+++++
T Consensus       120 --------------------~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~--~dvp~~~v~  177 (190)
T 3hjj_A          120 --------------------LHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVT--KDVPNNVVV  177 (190)
T ss_dssp             --------------------SSHHHHTSSEEEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC--SCBCTTEEE
T ss_pred             --------------------CchhhccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEC--cccCCCCEE
Confidence                                111222222222 457999999999999999999999999999999999  889999999


Q ss_pred             eccCceeeccCC
Q 039842          227 AGNPARFVRTLT  238 (284)
Q Consensus       227 ~G~pa~~~~~~~  238 (284)
                      +|+||+++++++
T Consensus       178 ~G~Pa~~i~~~~  189 (190)
T 3hjj_A          178 GGNPAKVIKTIE  189 (190)
T ss_dssp             ETTTTEEEEECC
T ss_pred             EccCCEEeccCC
Confidence            999999999865

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.86  E-value=1.9e-21  Score=166.01  Aligned_cols=133  Identities=19%  Similarity=0.254  Sum_probs=110.5

Q ss_pred             CCceeCCCcEEcCCcE--EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc
Q 039842           71 WVPKVAVDAYVAPNVV--LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM  148 (284)
Q Consensus        71 ~~~~i~~~~~I~~~a~--i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~  148 (284)
                      .+..++++++|.+++.  ++.++.||++++|+.++.|. +.+.++||++|.|+++|.|.+..|..               
T Consensus        54 ~~~~ig~~~~I~~~~~~~~g~~i~IG~~~~I~~~~~i~-~~~~i~IG~~v~Ig~~v~I~~~~h~~---------------  117 (203)
T 1krr_A           54 MFATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIV-DDYTVTIGDNVLIAPNVTLSVTGHPV---------------  117 (203)
T ss_dssp             HSSBCCSSCEECSCEEESCSTTEEECSSCEECSCEEEE-CSSCEEECSSCEECSSCEEESEECCS---------------
T ss_pred             HHhhcCCCcEEcCCeEEEeCCCeEECCeeEECCccEEe-cccceEECCCCEECCCCEEecCCccc---------------
Confidence            3456889999999976  47899999999999999997 66779999999999999998654411               


Q ss_pred             cCCCCCccccccCCcceEECCCCEECCCc-eeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842          149 SCPRSNSLYIAWLPAETSIERFVTIGAYC-SLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA  227 (284)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~-~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~  227 (284)
                                          +......+. .-++++|||+||||++|+|.++++||++|+|+++++|.  .+||++++++
T Consensus       118 --------------------~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~--~dvp~~~vv~  175 (203)
T 1krr_A          118 --------------------HHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVT--KDIPPNVVAA  175 (203)
T ss_dssp             --------------------STTTCTTCCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC--SCBCTTEEEE
T ss_pred             --------------------chhhcccCceeCCCcEECCCeEECCCCEEeCCeEECCCCEECCCCEEC--CCcCCCcEEE
Confidence                                001111222 23568999999999999999999999999999999999  7899999999


Q ss_pred             ccCceeeccCCHHH
Q 039842          228 GNPARFVRTLTHEE  241 (284)
Q Consensus       228 G~pa~~~~~~~~~~  241 (284)
                      |+||++++++.+++
T Consensus       176 G~PArvik~~~~~d  189 (203)
T 1krr_A          176 GVPCRVIREINDRD  189 (203)
T ss_dssp             TTTTEEEEECCGGG
T ss_pred             ccCcEEeccCChhh
Confidence            99999999987654

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.86  E-value=4.6e-21  Score=168.90  Aligned_cols=128  Identities=18%  Similarity=0.237  Sum_probs=108.8

Q ss_pred             eeCCCcEEcCCcEE----ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccccc
Q 039842           74 KVAVDAYVAPNVVL----AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMS  149 (284)
Q Consensus        74 ~i~~~~~I~~~a~i----~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~  149 (284)
                      .+++++.|.+.+.+    .+.+.||+++.|.+++.|. ....+.||++|.|++++.|.....                  
T Consensus        65 ~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~-~g~~v~IG~~~~Ig~~~~I~~~~~------------------  125 (252)
T 3jqy_B           65 IIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVAT-KGSKVIIGRRTTIGAGFEVVTDKC------------------  125 (252)
T ss_dssp             EECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEE-SSCEEEECTTCEECTTCEEECSSS------------------
T ss_pred             EEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEc-cCCEEEECCCCEECCCcEEEeCCC------------------
Confidence            45555555554444    4567899999999999985 456799999999999999974321                  


Q ss_pred             CCCCCccccccCCcceEECCCCEECCCceeec--------------------cEECCCCEECCCcEEcCCCEECCCCEEc
Q 039842          150 CPRSNSLYIAWLPAETSIERFVTIGAYCSLRS--------------------CTIEPECIIGQHSILMEGSMVETHAILE  209 (284)
Q Consensus       150 ~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~--------------------v~Igd~v~IG~~s~I~~gv~Ig~~~~I~  209 (284)
                                    +++||++|.||++|+|..                    ++|||+|+||++|+|.++++||++|+|+
T Consensus       126 --------------~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~Ig  191 (252)
T 3jqy_B          126 --------------NVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIG  191 (252)
T ss_dssp             --------------EEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEEC
T ss_pred             --------------CeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEEC
Confidence                          489999999999999865                    5999999999999999999999999999


Q ss_pred             CCCeeCCCCeeCCCCEEeccCceeecc
Q 039842          210 AGSVLPPGRRIPTGELWAGNPARFVRT  236 (284)
Q Consensus       210 a~s~V~~~~~I~~~~vv~G~pa~~~~~  236 (284)
                      ++++|.  .+||++++++|+|++++++
T Consensus       192 agsvV~--~~vp~~~~~~G~Pa~~i~~  216 (252)
T 3jqy_B          192 YGSIVT--KDVPSMCAAAGNPAKIIKR  216 (252)
T ss_dssp             TTCEEC--SCBCTTEEEEETTEEEEEE
T ss_pred             CCCEEC--cccCCCCEEEccCCEEEcc
Confidence            999999  7899999999999999987

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.86  E-value=1.3e-21  Score=166.48  Aligned_cols=132  Identities=18%  Similarity=0.225  Sum_probs=109.9

Q ss_pred             ceeCCCcEEcCCcEE--ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccC
Q 039842           73 PKVAVDAYVAPNVVL--AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSC  150 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i--~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~  150 (284)
                      ..+++++.|.+++.+  +.++.||++++|+++++|. +.+.++||++|.|+++|.|.+..+....               
T Consensus        55 ~~~g~~~~i~~~~~~~~g~~~~IG~~~~I~~~~~i~-~~~~v~IG~~v~Ig~~~~I~~~~~~~~~---------------  118 (199)
T 3ftt_A           55 QTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFM-DGGQITIGDNVFIGPNCGFYTATHPLNF---------------  118 (199)
T ss_dssp             TSCCSSEEECSSEEESSSTTEEECSSEEECTTEEEE-CSSCEEECSSEEECTTCEEECEECCSSH---------------
T ss_pred             hhcCCCeEEeCCEEEEecCCcEECCCeEECCCeEEe-cCCEEEECCCCEECCCCEEecCCCcCcc---------------
Confidence            467889999999987  7899999999999999995 6677999999999999999865442111               


Q ss_pred             CCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccC
Q 039842          151 PRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNP  230 (284)
Q Consensus       151 ~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~p  230 (284)
                                    .....+..     .-++++|||+||||++|+|.++++||++|+|+++++|.  ++||++++++|+|
T Consensus       119 --------------~~~~~~~~-----~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~--~dvp~~~v~~G~P  177 (199)
T 3ftt_A          119 --------------HHRNEGFE-----KAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVT--KDIPPHSLAVGNP  177 (199)
T ss_dssp             --------------HHHHTTEE-----EECCEEECSSEEECTTCEECTTCEECTTCEECTTCEEC--SCBCTTEEEETTT
T ss_pred             --------------ccccccce-----ecCCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEEC--cccCCCCEEEEEC
Confidence                          11111111     12567999999999999999999999999999999999  8999999999999


Q ss_pred             ceeeccCCHHH
Q 039842          231 ARFVRTLTHEE  241 (284)
Q Consensus       231 a~~~~~~~~~~  241 (284)
                      |++++++.+++
T Consensus       178 ak~i~~~~~~~  188 (199)
T 3ftt_A          178 CKVVRKIDNDL  188 (199)
T ss_dssp             TEEEEECCCCC
T ss_pred             CEEEeeCChhh
Confidence            99999987644

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.85  E-value=1.2e-20  Score=162.16  Aligned_cols=131  Identities=12%  Similarity=0.187  Sum_probs=112.9

Q ss_pred             ceeCCCcEEcCC-cEEec---ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc
Q 039842           73 PKVAVDAYVAPN-VVLAG---QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM  148 (284)
Q Consensus        73 ~~i~~~~~I~~~-a~i~~---~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~  148 (284)
                      ..+++++.|.++ +.+.+   ++.||++|.|++++.|.++.+.+.||++|.|++.+++....                  
T Consensus        37 v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~------------------   98 (215)
T 2wlg_A           37 VYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEK------------------   98 (215)
T ss_dssp             EEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTT------------------
T ss_pred             EEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCC------------------
Confidence            467888888777 56666   49999999999999998555679999999999966654321                  


Q ss_pred             cCCCCCccccccCCcceEECCCCEECCCceeec--------------------cEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          149 SCPRSNSLYIAWLPAETSIERFVTIGAYCSLRS--------------------CTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~--------------------v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                                    .+++||++|.|+++|+|..                    ++|||+||||++++|.++++||++|+|
T Consensus        99 --------------~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vI  164 (215)
T 2wlg_A           99 --------------GKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVV  164 (215)
T ss_dssp             --------------CEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEE
T ss_pred             --------------CCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEE
Confidence                          2589999999999999964                    599999999999999999999999999


Q ss_pred             cCCCeeCCCCeeCCCCEEe-ccCceeeccC
Q 039842          209 EAGSVLPPGRRIPTGELWA-GNPARFVRTL  237 (284)
Q Consensus       209 ~a~s~V~~~~~I~~~~vv~-G~pa~~~~~~  237 (284)
                      +++++|.  .++|++++++ |+||+++++.
T Consensus       165 gagsvV~--~~vp~~~i~~aG~Pa~~i~~~  192 (215)
T 2wlg_A          165 GSHTVLY--KSFKEPNCVIAGSPAKIVKEN  192 (215)
T ss_dssp             CTTCEEC--SCCCCCSCEEETTTTEEEECS
T ss_pred             CCCCEEc--CccCCCeEEEcccCCEEECCC
Confidence            9999999  7899999999 9999999874

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.85  E-value=1.9e-20  Score=173.90  Aligned_cols=72  Identities=22%  Similarity=0.349  Sum_probs=59.7

Q ss_pred             eEECCCCEECCCcee-------eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC
Q 039842          165 TSIERFVTIGAYCSL-------RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL  237 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I-------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~  237 (284)
                      +.|+++|.||++|.|       ++++|||+|+||.++.|.++++||++|+|+++++|.  ++||+++++.|+|+++++.+
T Consensus       263 v~I~~~v~IG~~~~i~~~~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V~--~~v~~~~~~~G~pa~~~~~~  340 (374)
T 2iu8_A          263 VQIAHQVEVGQHSMIVAQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVT--KSITSPGIYGGAPARPYQEI  340 (374)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTEEECTTCEEC--SCBCSCEEEEETTEEEHHHH
T ss_pred             cccCCccEECCCCEEccCcccCCCcEECCCeEEecCcEECCCcccCCCcEEccCceee--cccCCCcEEeCCCCchhHHH
Confidence            344444445544444       468999999999999999999999999999999999  78999999999999987664


Q ss_pred             C
Q 039842          238 T  238 (284)
Q Consensus       238 ~  238 (284)
                      .
T Consensus       341 ~  341 (374)
T 2iu8_A          341 H  341 (374)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.85  E-value=1.5e-20  Score=162.00  Aligned_cols=116  Identities=20%  Similarity=0.380  Sum_probs=106.2

Q ss_pred             cEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccc
Q 039842           79 AYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYI  158 (284)
Q Consensus        79 ~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  158 (284)
                      +.+++.+.+.+++.||++|+|+++++|..+   ++||++|.|+.+++|..                              
T Consensus       100 ~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~---~~IG~~~~I~~~~~I~~------------------------------  146 (220)
T 4ea9_A          100 NAIHPSAVVSPSVRLGEGVAVMAGVAINAD---SWIGDLAIINTGAVVDH------------------------------  146 (220)
T ss_dssp             CEECTTCEECTTCEECSSCEECTTCEECTT---CEECTTCEECTTCEECT------------------------------
T ss_pred             CcCCCCCEECCCCEECCCCEEcCCCEECCC---CEECCCCEECCCCEECC------------------------------
Confidence            678888888889999999999999999644   89999999999999852                              


Q ss_pred             ccCCcceEECCCCEECCCceeec-cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          159 AWLPAETSIERFVTIGAYCSLRS-CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       159 ~~~~~~v~Ig~~v~Ig~~~~I~~-v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                           +++||++|+|++++.|.+ ++||++|+||++++|.++++||++++|+++++|.  .++|++++++|+||++.
T Consensus       147 -----~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~Ig~~~~igagsvv~--~~v~~~~~~~G~Pa~i~  216 (220)
T 4ea9_A          147 -----DCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVV--RDLPDSVLAIGVPAKIK  216 (220)
T ss_dssp             -----TCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEEC--SCBCTTCEEETTTTEEC
T ss_pred             -----CCEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEc--cccCCCcEEEEeCCEEe
Confidence                 489999999999999976 9999999999999999999999999999999999  78999999999999943

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.85  E-value=5.5e-21  Score=161.27  Aligned_cols=130  Identities=18%  Similarity=0.245  Sum_probs=108.2

Q ss_pred             CceeCCCcEEcCCcEE--ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccccc
Q 039842           72 VPKVAVDAYVAPNVVL--AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMS  149 (284)
Q Consensus        72 ~~~i~~~~~I~~~a~i--~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~  149 (284)
                      ++.++++++|.+++.+  +.++.||++++|+++++|. +...++||++|.|+++|+|.+..+....              
T Consensus        56 ~~~ig~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~-~~~~i~IG~~~~Ig~~v~I~~~~h~~~~--------------  120 (188)
T 3srt_A           56 FGSVGKQINVEQNIRCDYGYNIHVGENFFANYDCIFL-DVCKIEIGDNVMLAPNVQIYTAYHPIDA--------------  120 (188)
T ss_dssp             SSBCCSCEEECSCEEESSSTTEEECTTEEECTTEEEE-CSSCEEECSSCEECTTCEEECEECCSSH--------------
T ss_pred             HhhcCCCCEEcCCEEEEeCCCeEECCcccccCceEEe-cCCceEECCeeEECCCcEEeeCCccCch--------------
Confidence            4578899999999987  5699999999999999996 6678999999999999999865442111              


Q ss_pred             CCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEecc
Q 039842          150 CPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGN  229 (284)
Q Consensus       150 ~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~  229 (284)
                                     .....+..+     -.+++|||+||||++|+|.++++||++|+|+++++|.  ++||++++++|+
T Consensus       121 ---------------~~~~~~~~~-----~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~--~dvp~~~v~~G~  178 (188)
T 3srt_A          121 ---------------QLRNSGIEY-----GSPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVT--KDIPPNTVAVGN  178 (188)
T ss_dssp             ---------------HHHHTTEEE-----ECCEEECSSCEECTTCEECTTCEECSSEEECTTCEEC--SCBCSSEEEETT
T ss_pred             ---------------hhccccceE-----CCCcEECCCcEEcCCCEECCCcEECCCCEECCCCEEC--cccCCCCEEEcc
Confidence                           111122222     2467999999999999999999999999999999999  889999999999


Q ss_pred             CceeeccCC
Q 039842          230 PARFVRTLT  238 (284)
Q Consensus       230 pa~~~~~~~  238 (284)
                      ||+++++++
T Consensus       179 Pa~vi~~i~  187 (188)
T 3srt_A          179 PCRVIKKIE  187 (188)
T ss_dssp             TTEEEEECC
T ss_pred             CCEEeccCC
Confidence            999998865

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.84  E-value=2.4e-20  Score=172.24  Aligned_cols=159  Identities=13%  Similarity=0.077  Sum_probs=98.9

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCC--------------------C
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS--------------------P  133 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~--------------------~  133 (284)
                      .|++++.|++++.|++++.||++|.|++++.|+++   ++||++|.|+++++|+.+...                    .
T Consensus       134 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~---~~IG~~~~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd  210 (357)
T 4e79_A          134 VVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGS---SKLRDRVRIHSSTVIGGEGFGFAPYQGKWHRIAQLGSVLIGN  210 (357)
T ss_dssp             EECTTCEECTTCEECTTCEECSSCEECTTCEECTT---CEECSSCEECTTCEESCCCCCEEEETTEEEECCCCCCEEECT
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCcEEecc---cEEEeEeeccCCeEECcccCcccccCCceeeccccCcEEEcC
Confidence            45555555555556656666666666666666433   666777777766666543211                    0


Q ss_pred             cccccceeeeeccccc----CCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          134 YRFVGFVSLLIDLQMS----CPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       134 ~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                      ...+|.++.+....+.    .............++++||++|+|+.++.| .+++|||+||||+++.|.+++.||++++|
T Consensus       211 ~v~IG~~~~I~~g~~~~t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv  290 (357)
T 4e79_A          211 DVRIGSNCSIDRGALDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTL  290 (357)
T ss_dssp             TCEECTTCEECCCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEE
T ss_pred             CcEEccccEEeccccCCccccCCcccCCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEE
Confidence            1122222222211000    000000001112234555566666666555 35999999999999999999999999999


Q ss_pred             cCCCeeCCCCee-CCCCEEeccCceeeccC
Q 039842          209 EAGSVLPPGRRI-PTGELWAGNPARFVRTL  237 (284)
Q Consensus       209 ~a~s~V~~~~~I-~~~~vv~G~pa~~~~~~  237 (284)
                      +++++|.  +++ |+++++.|+|++.++++
T Consensus       291 ~g~s~V~--~~v~~~~~~~~G~Pa~~~~~~  318 (357)
T 4e79_A          291 TGMSMVT--KNISEAGTYSSGTGLFENNHW  318 (357)
T ss_dssp             CTTCEEC--SCBCSCEEEECSCCCEEHHHH
T ss_pred             eecCEEc--CccCCCCcEEEeCchHHHHHH
Confidence            9999999  889 99999999999987653

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.84  E-value=4.1e-20  Score=156.57  Aligned_cols=116  Identities=16%  Similarity=0.289  Sum_probs=105.0

Q ss_pred             cEEcCCcEEecceEEC--CCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcc
Q 039842           79 AYVAPNVVLAGQVTVC--DGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSL  156 (284)
Q Consensus        79 ~~I~~~a~i~~~v~IG--~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  156 (284)
                      .+|+|++.+.+++.||  ++++|+++++|..+   ++||++|.|+++++|..                            
T Consensus        76 ~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~---~~IG~~~~I~~~~~i~~----------------------------  124 (194)
T 3bfp_A           76 NLIHKSALISPSAIVEENAGILIMPYVVINAK---AKIEKGVILNTSSVIEH----------------------------  124 (194)
T ss_dssp             CEECTTCEECTTCEECTTSCCEECTTCEECTT---CEECTTCEECTTCEECT----------------------------
T ss_pred             cccCCeEEECCCceeCCCCCcEEcCCCEECCC---CEECCCCEECCCCEEcC----------------------------
Confidence            6788888888888899  99999999998544   88999999999999852                            


Q ss_pred             ccccCCcceEECCCCEECCCceeec-cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          157 YIAWLPAETSIERFVTIGAYCSLRS-CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       157 ~~~~~~~~v~Ig~~v~Ig~~~~I~~-v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                             +++||++|+|+.++.|.+ ++||++|+||++++|.++++||++++|+++++|.  +++|++++++|+||+++
T Consensus       125 -------~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv~--~~v~~~~~~~G~Pa~~i  194 (194)
T 3bfp_A          125 -------ECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLV--KNQDEKGVFVGVPAKRM  194 (194)
T ss_dssp             -------TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC--SCBCSCCEECCCCCCCC
T ss_pred             -------CCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEECCCCEEc--cccCCCCEEEeeccEEC
Confidence                   489999999999999976 9999999999999999999999999999999999  88999999999999853

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.84  E-value=2.1e-20  Score=176.93  Aligned_cols=157  Identities=20%  Similarity=0.226  Sum_probs=112.9

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccC--
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSC--  150 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~--  150 (284)
                      ..+++++.|++++.|.++++||++|.|++++.|. +   +.||++|.|+++++|....-.....+|.++.+.......  
T Consensus       266 ~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~-~---~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~  341 (456)
T 2v0h_A          266 LEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLK-N---VVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAE  341 (456)
T ss_dssp             EEECSSCEECSSEEEEEEEEECTTCEECTTCEEE-E---EEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTT
T ss_pred             eEECCCCEEcCCcEEcCCcEECCCCEECCCCEEE-e---EEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCC
Confidence            3678888999999998999999999999999985 3   667777776666655422111111122222211100000  


Q ss_pred             ---------------CCCCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCE
Q 039842          151 ---------------PRSNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAI  207 (284)
Q Consensus       151 ---------------~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~  207 (284)
                                     ......+..+. .+++||++|+||+++++.        +++||++||||++|+|.++++||++|+
T Consensus       342 ~~ig~~~~i~~~~i~~~~~i~~~~~~-~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~  420 (456)
T 2v0h_A          342 THVGNFVEIKKSTVGKGSKVNHLTYV-GDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGAT  420 (456)
T ss_dssp             CEEEEEEEEESCEECTTCEEEEEEEE-ESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCE
T ss_pred             CEECCCCEEeccEECCCCEeccceee-cCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCE
Confidence                           00000111111 357999999999999984        699999999999999999999999999


Q ss_pred             EcCCCeeCCCCeeCCCCEEeccCceeecc
Q 039842          208 LEAGSVLPPGRRIPTGELWAGNPARFVRT  236 (284)
Q Consensus       208 I~a~s~V~~~~~I~~~~vv~G~pa~~~~~  236 (284)
                      |+++++|.  .++|++++++|+||+++++
T Consensus       421 ig~~s~v~--~~v~~~~~~~G~pa~~~~~  447 (456)
T 2v0h_A          421 IGAGTTIT--RDVGENELVITRVAQRHIQ  447 (456)
T ss_dssp             ECTTCEEC--SCBCTTCEECCCCCCCCCT
T ss_pred             ECCCCEEC--CCcCCCCEEEccCceehhh
Confidence            99999999  8899999999999998865

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.83  E-value=5.2e-20  Score=174.34  Aligned_cols=156  Identities=22%  Similarity=0.232  Sum_probs=111.8

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccccc----
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMS----  149 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~----  149 (284)
                      .+++++.|++++.|.+++.||++|.|+++++|. +   +.||++|.|+++|+|....-.....+|.++.+......    
T Consensus       270 ~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~---~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~  345 (459)
T 4fce_A          270 THGRDITIDTNVIIEGHVILGDRVRIGTGCVLK-N---CVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGA  345 (459)
T ss_dssp             EECSSCEECTTEEEEEEEEECTTCEECTTCEEE-S---CEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTC
T ss_pred             EECCCcEECCCeeeccceEECCCCEECCCCEEe-c---cEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCc
Confidence            588899999999998889999999999999886 4   67777777776666542111111222222222110000    


Q ss_pred             -------------CCCCCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          150 -------------CPRSNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       150 -------------~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                                   ............ .+++||++|.||+++.+.        +++|||+||||++++|.++++||++|+|
T Consensus       346 ~Ig~~~~i~~~~i~~~~~i~~~~~i-~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~i  424 (459)
T 4fce_A          346 HVGNFVEIKKARLGKGSKAGHLSYL-GDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATI  424 (459)
T ss_dssp             EEEEEEEEEEEEECTTCEEEEEEEE-EEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTTCEE
T ss_pred             EECCCeEEeeeEEcCCCEECCceEE-CCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCCCEE
Confidence                         000000111111 346899999999999884        5999999999999999999999999999


Q ss_pred             cCCCeeCCCCeeCCCCEEeccCceeecc
Q 039842          209 EAGSVLPPGRRIPTGELWAGNPARFVRT  236 (284)
Q Consensus       209 ~a~s~V~~~~~I~~~~vv~G~pa~~~~~  236 (284)
                      +++++|.  ++||++++++|+|+++.++
T Consensus       425 gagsvV~--~~v~~~~~~~G~p~~~~~~  450 (459)
T 4fce_A          425 GAGTTVT--RDVAENELVISRVKQVHIQ  450 (459)
T ss_dssp             CTTCEEC--SCBCTTCEECCCCCCCCCT
T ss_pred             CCCCEEc--cccCCCCEEEecccccchh
Confidence            9999999  8899999999999987655

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.83  E-value=2.8e-20  Score=156.16  Aligned_cols=126  Identities=18%  Similarity=0.288  Sum_probs=103.0

Q ss_pred             ceeCCCcEEcCCcE--EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccC
Q 039842           73 PKVAVDAYVAPNVV--LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSC  150 (284)
Q Consensus        73 ~~i~~~~~I~~~a~--i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~  150 (284)
                      ..++ +++|+|++.  ++.+++||++++|+++++|. +...++||++|.|+++|.|.+..|....               
T Consensus        54 ~~~g-~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~-~~~~i~IG~~v~Ig~~v~I~~~~h~~~~---------------  116 (182)
T 1ocx_A           54 GQVT-EAYIEPTFRCDYGYNIFLGNNFFANFDCVML-DVCPIRIGDNCMLAPGVHIYTATHPIDP---------------  116 (182)
T ss_dssp             SBCS-SEEECSCEEESSSTTEEECSSEEECSSEEEE-CSSCEEECTTCEECTTCEEECEECCSSH---------------
T ss_pred             cccC-CEEEeCCEEEEeCCCEEECCCcEEeCCeEEE-eccceEEcCCcEEeCCcEEEeCCCccCh---------------
Confidence            3466 799999855  57899999999999999996 5667999999999999999865442110               


Q ss_pred             CCCCccccccCCcceEECCCCEECCCc-eeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEecc
Q 039842          151 PRSNSLYIAWLPAETSIERFVTIGAYC-SLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGN  229 (284)
Q Consensus       151 ~~~~~~~~~~~~~~v~Ig~~v~Ig~~~-~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~  229 (284)
                                    ..-.      .+. .-++++|||+||||++|+|.++++||++|+|+++++|.  .+||++++++|+
T Consensus       117 --------------~~~~------~~~~~~~~v~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV~--~dip~~~vv~G~  174 (182)
T 1ocx_A          117 --------------VARN------SGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVT--KDVPDNVVVGGN  174 (182)
T ss_dssp             --------------HHHT------TTCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC--SCBCSSEEEETT
T ss_pred             --------------hhcc------cCccccCCeEEeCCeEECCCCEECCCcEECCCCEECCCCEEC--CcCCCCcEEEcc
Confidence                          0000      111 23568999999999999999999999999999999999  789999999999


Q ss_pred             CceeeccC
Q 039842          230 PARFVRTL  237 (284)
Q Consensus       230 pa~~~~~~  237 (284)
                      ||++++++
T Consensus       175 Pa~~i~~~  182 (182)
T 1ocx_A          175 PARIIKKL  182 (182)
T ss_dssp             TTEEEEEC
T ss_pred             ccEEeccC
Confidence            99998753

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.82  E-value=8.3e-20  Score=162.94  Aligned_cols=127  Identities=20%  Similarity=0.336  Sum_probs=108.6

Q ss_pred             CCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCc
Q 039842           76 AVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNS  155 (284)
Q Consensus        76 ~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (284)
                      ..++.|+|++.|.+++.||+++.|+++ .|..+   +.||++|.|+.+++|+.                           
T Consensus       102 ~~g~~I~p~a~I~~~~~Ig~g~~I~~~-~i~~~---~~IG~~~~I~~~~~Ig~---------------------------  150 (276)
T 3gos_A          102 REGFRVVPPATVRKGAFIARNTVLMPS-YVNIG---AFVDEGTMVDTWATVGS---------------------------  150 (276)
T ss_dssp             HHCCEECTTCEEBTTCEECTTCEECSE-EECTT---CEECTTCEECTTEEECT---------------------------
T ss_pred             cCCcEECCCcEECCCCEECCCCEEcCC-EEcCC---eEECCCCEECCCCEECC---------------------------
Confidence            346788888888888889999999887 66433   88999999998888853                           


Q ss_pred             cccccCCcceEECCCCEECCCceee---------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCC--------
Q 039842          156 LYIAWLPAETSIERFVTIGAYCSLR---------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGR--------  218 (284)
Q Consensus       156 ~~~~~~~~~v~Ig~~v~Ig~~~~I~---------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~--------  218 (284)
                              +++||++|.|+.++.|.         +++|||+|+||++|+|.++++||++|+|+++++|.+++        
T Consensus       151 --------~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~~~~~  222 (276)
T 3gos_A          151 --------CAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETG  222 (276)
T ss_dssp             --------TCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTC
T ss_pred             --------CCEECCCCEECCCCEECCccccCCCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEcccccc
Confidence                    37899999999999984         59999999999999999999999999999999999644        


Q ss_pred             -----eeCCCCEE-ecc-C----------ceeeccCCHHH
Q 039842          219 -----RIPTGELW-AGN-P----------ARFVRTLTHEE  241 (284)
Q Consensus       219 -----~I~~~~vv-~G~-p----------a~~~~~~~~~~  241 (284)
                           +||+++++ .|+ |          |++++++++++
T Consensus       223 ~~~~g~Vp~~svvv~G~~P~~~g~~~~~~A~iik~~~~~~  262 (276)
T 3gos_A          223 EVHYGRVPAGSVVVSGNLPSKDGSYSLYCAVIVKKVDAKT  262 (276)
T ss_dssp             CEECSEECTTEEEEEEEEECTTSSCEEEEEEEEEECCC--
T ss_pred             ceeccccCCCcEEECCCccCCCCcccccccEEEEEcChhh
Confidence                 89999999 596 9          99999887754

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.82  E-value=2.9e-20  Score=160.54  Aligned_cols=141  Identities=13%  Similarity=0.166  Sum_probs=91.1

Q ss_pred             eCCCcEEcCCcEEe-cceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecC-CCCCcccccceeeeecccccCCC
Q 039842           75 VAVDAYVAPNVVLA-GQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAA-WNSPYRFVGFVSLLIDLQMSCPR  152 (284)
Q Consensus        75 i~~~~~I~~~a~i~-~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~-~~~~~~~~g~~~~~~~~~~~~~~  152 (284)
                      +++++.|++++.|. .+..+.+++.|++++.|..+   ++||++|.|+++|+|... ..+...         ..      
T Consensus        32 ~~~~v~IG~~t~i~~~~~~~~~~~vI~~~~~Ig~~---v~IG~~~~Ig~~v~i~~~g~~~~~~---------~~------   93 (220)
T 4hur_A           32 TNENILVGEYSYYDSKRGESFEDQVLYHYEVIGDK---LIIGRFCSIGPGTTFIMNGANHRMD---------GS------   93 (220)
T ss_dssp             CSTTEEECTTCEEECSSSCCGGGGEESCCTTTCCC---EEECSSCEECTTCEEECGGGCCCCS---------SC------
T ss_pred             ECCCEEECCCeEECCcCCcccCCeEEeCCCEECCC---eEECCCCEECCCCEEEECCCCcccC---------Cc------
Confidence            34455555555441 13333456777777777433   899999999999987421 111100         00      


Q ss_pred             CCccccccCC-cceEECCCCE---ECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEec
Q 039842          153 SNSLYIAWLP-AETSIERFVT---IGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAG  228 (284)
Q Consensus       153 ~~~~~~~~~~-~~v~Ig~~v~---Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G  228 (284)
                         .    ++ .....+....   +..-...++++||++||||++|+|.++++||++|+|+++++|.  ++||++++++|
T Consensus        94 ---~----~~~~~~~~~~~~~~~~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~--~dVp~~~vv~G  164 (220)
T 4hur_A           94 ---T----YPFHLFRMGWEKYMPSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVT--KNVAPYSIVGG  164 (220)
T ss_dssp             ---C----CCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEEC--SCBCTTEEEET
T ss_pred             ---c----eeeeeecccccccccccccccccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEc--ccCCCCcEEeC
Confidence               0    00 0000110000   0111133678999999999999999999999999999999999  88999999999


Q ss_pred             cCceeeccC-CHHHH
Q 039842          229 NPARFVRTL-THEET  242 (284)
Q Consensus       229 ~pa~~~~~~-~~~~~  242 (284)
                      +||++++.+ ++++.
T Consensus       165 ~PAk~ir~r~~~~~i  179 (220)
T 4hur_A          165 NPLKFIRKRFSDGVI  179 (220)
T ss_dssp             TTTEEEEESSCHHHH
T ss_pred             CCCEeehhcCCHHHH
Confidence            999999864 44433

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.82  E-value=4.5e-19  Score=157.69  Aligned_cols=159  Identities=17%  Similarity=0.179  Sum_probs=124.5

Q ss_pred             CceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCC-------cccccceeeee
Q 039842           72 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSP-------YRFVGFVSLLI  144 (284)
Q Consensus        72 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~-------~~~~g~~~~~~  144 (284)
                      ...+++++.|+|++.|++++.||++|+|+++++|.++   ++||++|.|+++|+|+...++.       ...+|.++.+.
T Consensus        13 ~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~---~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~   89 (270)
T 1j2z_A           13 KAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGH---TFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIR   89 (270)
T ss_dssp             TSEECTTCEECTTCEECTTCEECTTCEECTTCEECSE---EEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEEC
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCC---eEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEEC
Confidence            4578889999999999999999999999999999765   9999999999999997654321       12233333333


Q ss_pred             cccccCCCCCccccccCC-cceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCC
Q 039842          145 DLQMSCPRSNSLYIAWLP-AETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPT  222 (284)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~-~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~  222 (284)
                      +......      .+... .+++||+++.|++++.| ++++||++|+|+.++.+.++++||++++|+++++|.+++.|++
T Consensus        90 ~~~~I~~------~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~IG~  163 (270)
T 1j2z_A           90 EFCMINP------GTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAK  163 (270)
T ss_dssp             TTCEECC------CCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECT
T ss_pred             CCeEEcC------CeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCcEeCC
Confidence            2211110      00111 25899999999999988 7899999999999999999999999999999999999999999


Q ss_pred             CCEEeccCceeeccCCHH
Q 039842          223 GELWAGNPARFVRTLTHE  240 (284)
Q Consensus       223 ~~vv~G~pa~~~~~~~~~  240 (284)
                      ++++.+. +.+.+++++.
T Consensus       164 ~a~Ig~~-s~V~~dvp~~  180 (270)
T 1j2z_A          164 GCMIAGK-SALGKDVPPY  180 (270)
T ss_dssp             TCEECTT-CEECSBBCTT
T ss_pred             ceEEecC-cEecccCCCC
Confidence            9997665 7776666644

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.82  E-value=2.2e-19  Score=162.06  Aligned_cols=129  Identities=17%  Similarity=0.271  Sum_probs=105.3

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      +..++.|+|++.|..++.||+++.|+++ +|..+   +.||++|.|..+++|+.                          
T Consensus       126 ~~~g~~I~p~a~I~~~v~Ig~g~~I~~~-~I~~~---~~IG~~~~I~~~~~Ig~--------------------------  175 (304)
T 3eg4_A          126 EKAGFRAVPNCIVRHSAYIAPNAILMPS-FVNLG---AYVDKGAMIDTWATVGS--------------------------  175 (304)
T ss_dssp             HHHCCEECTTCEEBTTCEECTTCEECSE-EECTT---CEECTTCEECTTEEECT--------------------------
T ss_pred             ccCCcEEcCCEEECCCcEECCCCEEeCC-EECCC---CEECCCcEEcCCcEECC--------------------------
Confidence            3456778888888888888888888876 55433   67788888877777743                          


Q ss_pred             ccccccCCcceEECCCCEECCCceeec---------cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCC-------
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSLRS---------CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGR-------  218 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~---------v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~-------  218 (284)
                               ++.||++|.|+.++.+.+         ++|||+|+||++|+|.++++||++|+|+++++|.+++       
T Consensus       176 ---------~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Igd~~~  246 (304)
T 3eg4_A          176 ---------CAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRAT  246 (304)
T ss_dssp             ---------TCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTT
T ss_pred             ---------CCccCCCcEECCCCEECCccccCccCCeEEcCCCEECCCCEEcCCcEECCCcEECCCCEEcCCeEECccce
Confidence                     378888888888888866         8999999999999999999999999999999998654       


Q ss_pred             ------eeCCCCEEe----------ccC-------ceeeccCCHHHH
Q 039842          219 ------RIPTGELWA----------GNP-------ARFVRTLTHEET  242 (284)
Q Consensus       219 ------~I~~~~vv~----------G~p-------a~~~~~~~~~~~  242 (284)
                            +||+++++.          |+|       |+++++++++..
T Consensus       247 g~~~~~~Ip~~svV~~Gs~v~kd~~G~P~g~~~~~A~iik~~~~~t~  293 (304)
T 3eg4_A          247 GEVFYGEVPPYSVVVAGTMPGKNVPGENWGPSLYCAVIVKRADEKTR  293 (304)
T ss_dssp             CCEECSEECTTEEEEEEEEECCCCTTSSCCCEEEEEEEEEECCHHHH
T ss_pred             eeeccCEeCCCCEEecCcEecCCCCCCcCcccccceEEEEEccccch
Confidence                  899999999          999       999999887643

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.82  E-value=4.1e-19  Score=158.95  Aligned_cols=158  Identities=14%  Similarity=0.175  Sum_probs=113.2

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCC-------cccccceeeeec
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSP-------YRFVGFVSLLID  145 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~-------~~~~g~~~~~~~  145 (284)
                      ..+++++.|++++.|++++.||++|.|+++++|.++   ++||++|.|+++++|+...++.       ...+|.++.+.+
T Consensus        35 a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~~~Ig~  111 (283)
T 4eqy_A           35 AQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGH---TTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIRE  111 (283)
T ss_dssp             CEECTTCEECTTCEECTTEEECTTCEECTTCEECSE---EEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSSCEECT
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEECCC---cEECCCcEEcCCcEECCCCccccccCCCceEEECCCcccCc
Confidence            456677777777777777777777777777777544   7888888888888886533211       122333333332


Q ss_pred             ccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCC
Q 039842          146 LQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGE  224 (284)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~  224 (284)
                      ........     ......++||++|.|++++.| ++++||++|+|+.++.+.++++||++|+|+++++|.+++.|++++
T Consensus       112 ~~~I~~g~-----~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~  186 (283)
T 4eqy_A          112 FTTIHTGT-----VQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHS  186 (283)
T ss_dssp             TEEEECCC-----TTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             ceeEccce-----ecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEECCCc
Confidence            21110000     000124899999999999999 889999999999999999999999999999999999999999999


Q ss_pred             EEeccCceeeccCCH
Q 039842          225 LWAGNPARFVRTLTH  239 (284)
Q Consensus       225 vv~G~pa~~~~~~~~  239 (284)
                      ++.+. +.+.+++++
T Consensus       187 vvg~~-s~V~~dvp~  200 (283)
T 4eqy_A          187 MLGGA-SALVQDIPP  200 (283)
T ss_dssp             EECTT-CEECSBBCT
T ss_pred             EECCC-CeEecccCC
Confidence            98765 455555554

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.82  E-value=6.1e-20  Score=154.51  Aligned_cols=126  Identities=16%  Similarity=0.264  Sum_probs=103.6

Q ss_pred             eeCCCcEEcCCcE--EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCC
Q 039842           74 KVAVDAYVAPNVV--LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCP  151 (284)
Q Consensus        74 ~i~~~~~I~~~a~--i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~  151 (284)
                      .++.++.|.++..  ++.++.||++++|+++++|. +.+.++||++|.|+++|+|.+..|....                
T Consensus        56 ~~g~~~~I~~p~~~~~g~~v~IG~~~~i~~~~~i~-~~~~i~IG~~v~Ig~~v~I~~~~h~~~~----------------  118 (185)
T 2p2o_A           56 STGERLFIEPNFRCDYGYNIHVGENFFMNFDGVIL-DVCEVRIGDHCFIGPGVHIYTATHPLDP----------------  118 (185)
T ss_dssp             BCCSCEEECSCEEESCSTTEEECTTEEECSSEEEE-CSSCEEECTTCEECTTCEEECEECCSSH----------------
T ss_pred             ccCCCcEEeccEEEEecCCEEECCeeEEcCCeEEE-eccceEECCCcEEeCCCEEEcCCCcCCh----------------
Confidence            4677889988654  57899999999999999996 6667999999999999999865442110                


Q ss_pred             CCCccccccCCcceEECCCCEECCCce-eeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccC
Q 039842          152 RSNSLYIAWLPAETSIERFVTIGAYCS-LRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNP  230 (284)
Q Consensus       152 ~~~~~~~~~~~~~v~Ig~~v~Ig~~~~-I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~p  230 (284)
                                   ...      ..+.. -++++|||+||||++|+|.++++||++|+|+++++|.  .+||++++++|+|
T Consensus       119 -------------~~~------~~~~~~~~~v~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~--~~vp~~~vv~G~P  177 (185)
T 2p2o_A          119 -------------HER------NSGLEYGKPVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVT--KDVPANAVVGGNP  177 (185)
T ss_dssp             -------------HHH------HTCCBEECCEEECSSCEECTTCEECTTCEECTTCEECTTCEEC--SCBCTTEEEEETT
T ss_pred             -------------hhc------ccCccccCCeEEcCCeEECCCCEECCCCEECCCCEECCCCEEC--CCCCCCcEEEccc
Confidence                         000      01122 3568999999999999999999999999999999999  6799999999999


Q ss_pred             ceeeccC
Q 039842          231 ARFVRTL  237 (284)
Q Consensus       231 a~~~~~~  237 (284)
                      |++++++
T Consensus       178 a~vi~~i  184 (185)
T 2p2o_A          178 AKVIKWL  184 (185)
T ss_dssp             EEEEEEC
T ss_pred             CEEeeec
Confidence            9999875

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.81  E-value=1.2e-19  Score=164.55  Aligned_cols=128  Identities=23%  Similarity=0.345  Sum_probs=105.9

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      ++.++.|+|++.|.+++.||++|.|+++ .|..+   +.||++|.|..+++|+.                          
T Consensus       142 ~~~~~~I~p~a~I~~~~~IG~g~~I~~~-~I~~g---~~IG~~~~I~~~~~Ig~--------------------------  191 (316)
T 3tk8_A          142 AAGGFRVVPPAIARRGSFIAKNVVLMPS-YTNIG---AYVDEGTMVDTWATVGS--------------------------  191 (316)
T ss_dssp             HHHCCEECTTCEEBTTCEECTTCEECSE-EECTT---CEECTTCEECTTEEECT--------------------------
T ss_pred             ecCCcEEeCCeEEeCCcEEcCCCEECCC-EEeCC---CEECCCCEEccceEECC--------------------------
Confidence            3456788888888888888888888877 45323   56788888888777743                          


Q ss_pred             ccccccCCcceEECCCCEECCCceeec---------cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCC-------
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSLRS---------CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGR-------  218 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~---------v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~-------  218 (284)
                               ++.||++|.|+.++.|.+         ++|||+|+||++|+|.++++||++|+|+++++|.+++       
T Consensus       192 ---------~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~t~I~d~~~  262 (316)
T 3tk8_A          192 ---------CAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRET  262 (316)
T ss_dssp             ---------TCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTT
T ss_pred             ---------CCEECCCCEEcCCCEECCCcccccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeeeccccc
Confidence                     378999999999999865         9999999999999999999999999999999999654       


Q ss_pred             ------eeCCCCEE-ecc-C----------ceeeccCCHHH
Q 039842          219 ------RIPTGELW-AGN-P----------ARFVRTLTHEE  241 (284)
Q Consensus       219 ------~I~~~~vv-~G~-p----------a~~~~~~~~~~  241 (284)
                            +||+++++ +|+ |          |++++++++..
T Consensus       263 ~~v~~g~Vp~gsvVvaGsvP~~~g~~~~~~A~iik~~~~~t  303 (316)
T 3tk8_A          263 GEVTYGRIPAGSVVVAGNLPAKDGTHSLYCAVIVKKVDAKT  303 (316)
T ss_dssp             CCEECSEECTTEEEEEEEEECTTSSCEEEEEEEEEECCC--
T ss_pred             ccccccEeCCCCEEECCCCcCCcccccccceEEEEECCccc
Confidence                  89999999 696 9          99999887654

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.81  E-value=5.3e-19  Score=168.05  Aligned_cols=160  Identities=14%  Similarity=0.195  Sum_probs=107.4

Q ss_pred             CceeCCCcEEcCCcEEecceEECCCCEECCCCEEecC-----CC--------cEEECCCCEECCCCEEecCCC-CCcccc
Q 039842           72 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD-----LN--------KITVGFCSNVQERCVLHAAWN-SPYRFV  137 (284)
Q Consensus        72 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~-----~~--------~v~IG~~~~I~~~~~I~~~~~-~~~~~~  137 (284)
                      .+.+++++.|++++.|.+++.||++|.|+++++|. +     ..        .+.||++|.|++++.|..... .....+
T Consensus       274 ~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~I  352 (468)
T 1hm9_A          274 DVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVV-DSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHI  352 (468)
T ss_dssp             TCEECTTCEECSSCEEESSCEECTTCEECTTCEEE-SCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTCEE
T ss_pred             CcEECCCCEECCCcEECCCCEECCCCEECCCCEEe-ccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCccEE
Confidence            34677788888888888888888888888888774 3     10        023444444444444432211 011112


Q ss_pred             cceeeeecccccCCCCCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCEEc
Q 039842          138 GFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAILE  209 (284)
Q Consensus       138 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~  209 (284)
                      |....+.+.. ..+.......... .+++||++|.||+++++.        +++||++||||++|+|.++++||++++|+
T Consensus       353 g~~~~i~~~~-Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~  430 (468)
T 1hm9_A          353 GNFVEVKGSS-IGENTKAGHLTYI-GNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVG  430 (468)
T ss_dssp             EEEEEEESCE-ECTTCEEEEEEEE-ESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCEEC
T ss_pred             CCCcEEeeeE-EcCCcEeCCceEE-ccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCEEC
Confidence            2211111100 0000000111111 347899999999999885        59999999999999999999999999999


Q ss_pred             CCCeeCCCCeeCCCCEEeccCceeecc
Q 039842          210 AGSVLPPGRRIPTGELWAGNPARFVRT  236 (284)
Q Consensus       210 a~s~V~~~~~I~~~~vv~G~pa~~~~~  236 (284)
                      ++++|.  .+||+++++.|+|+++++.
T Consensus       431 ~~s~v~--~~v~~~~~~~G~pa~~~~~  455 (468)
T 1hm9_A          431 AGSTIT--KDVPADAIAIGRGRQINKD  455 (468)
T ss_dssp             TTCEEC--SCBCTTCEECCSCCCCCCT
T ss_pred             CCCEEC--CCCCCCCEEEcCcceeehh
Confidence            999999  7999999999999998764

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.81  E-value=3.7e-19  Score=165.09  Aligned_cols=222  Identities=17%  Similarity=0.119  Sum_probs=121.4

Q ss_pred             ChhhhhhhHhhhhhhcccchhhhhhhhhhhhhhccccccccccCCCCCCCCcccccccccccceeeecC----CC-----
Q 039842            1 MAALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYRGQRQIIPLG----QW-----   71 (284)
Q Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----   71 (284)
                      +++|+.+.+.+|+|+.+.  +|+..+..+.++...-.    .............+..++..+..+..++    ..     
T Consensus        50 ~~~~~~a~~~~l~fl~~~--~~~~~~~~~~a~~~i~~----~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~i~  123 (372)
T 3pmo_A           50 LATLQEAGPAQLSFLANP--QYRKYLPESRAGAVLLT----AADADGFAGTALVVANPYLAYASLSHLFDRKPKAAAGIH  123 (372)
T ss_dssp             EECGGGCCTTSEEECCCG--GGGGGGGGCCCSEEEEC----HHHHTTCSSCEEECSCHHHHHHHHHGGGCCCCCCCSEEC
T ss_pred             ecChhhCCCCeEEEECCH--HHHHHHhcCCCcEEEEc----HHHHhhccccEEEECCHHHHHHHHHHHhccccccccccC
Confidence            367899999999999999  99998888776655221    1110001111122222222221111111    11     


Q ss_pred             -------CceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeee
Q 039842           72 -------VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLI  144 (284)
Q Consensus        72 -------~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~  144 (284)
                             ...++++++|++++.|+++++||++|+|+++++|..+   +.||++|.|+++++|+...     .+|..+.+.
T Consensus       124 p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~---v~IG~~~~I~~~~~I~~~~-----~IG~~v~I~  195 (372)
T 3pmo_A          124 PTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGAR---SVIGEGGWLAPRVTLYHDV-----TIGARVSIQ  195 (372)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT---CEECTTCEECTTCEECTTE-----EECTTCEEC
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCC---CEECCCcccCCCcEEEeee-----EECceeecc
Confidence                   1134444444444445555555555555555555322   4444544444444443322     122222222


Q ss_pred             ccccc------CC-CCCccccccCCcceEECCCCEECCCcee-----------------------eccEECCCCEECCCc
Q 039842          145 DLQMS------CP-RSNSLYIAWLPAETSIERFVTIGAYCSL-----------------------RSCTIEPECIIGQHS  194 (284)
Q Consensus       145 ~~~~~------~~-~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-----------------------~~v~Igd~v~IG~~s  194 (284)
                      .....      .. ...........++++||++|+||++++|                       ++++||++|+|+.++
T Consensus       196 ~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I~~~v~IG~~~~I~~~~  275 (372)
T 3pmo_A          196 SGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDHTAMAACV  275 (372)
T ss_dssp             TTCEEEECCCCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             CCcEEecCcccccccCCcceeccccCCeEECCCCEECCCcEEccCcccceEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence            11000      00 0000000001124666666666666665                       357788888888888


Q ss_pred             EEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC
Q 039842          195 ILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL  237 (284)
Q Consensus       195 ~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~  237 (284)
                      .|.++++||++|+|+++++|.++..|++++++.|.+. +.+++
T Consensus       276 ~I~~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~-V~k~v  317 (372)
T 3pmo_A          276 GISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTM-VTRSI  317 (372)
T ss_dssp             EECTTCEECSSCEECTTCEECSSCEECSSEEECTTCE-ECSCB
T ss_pred             EECCCCEECCCeEEeCCCEECCCCEECCCCEEeeCCE-EccCc
Confidence            8889999999999999999999999999999988755 44555

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.80  E-value=5.9e-19  Score=163.89  Aligned_cols=77  Identities=14%  Similarity=0.200  Sum_probs=61.4

Q ss_pred             cceEECCCCEECCCceee-----------------------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCe
Q 039842          163 AETSIERFVTIGAYCSLR-----------------------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRR  219 (284)
Q Consensus       163 ~~v~Ig~~v~Ig~~~~I~-----------------------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~  219 (284)
                      ++++||++|+||++++|.                       +++||++|+|++++.|.++++||++|+|++++.|.++..
T Consensus       227 g~v~Ig~~v~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~~~v~IG~~~~i~~~~~v~~~~~Ig~~~~Ig~~~~i~~~v~  306 (374)
T 2iu8_A          227 GKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGSTKIGNHVIIGGQAGITGHIC  306 (374)
T ss_dssp             CCEEECTTCEECTTCEEEECSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCE
T ss_pred             ccEEECCCCEECCCcEEccCcccceeECCCcEECCccccCCccEECCCCEEccCcccCCCcEECCCeEEecCcEECCCcc
Confidence            468999999999999883                       467777777777777888899999999999999999999


Q ss_pred             eCCCCEEeccCceeeccCCHH
Q 039842          220 IPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       220 I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      |++++++.+. +.+.+++++.
T Consensus       307 Ig~~~~I~a~-s~V~~~v~~~  326 (374)
T 2iu8_A          307 IADHVIMMAQ-TGVTKSITSP  326 (374)
T ss_dssp             ECTTEEECTT-CEECSCBCSC
T ss_pred             cCCCcEEccC-ceeecccCCC
Confidence            9999886543 5555665543

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.80  E-value=3e-18  Score=151.37  Aligned_cols=160  Identities=11%  Similarity=0.100  Sum_probs=122.6

Q ss_pred             CCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCC--------Ccccccceee
Q 039842           71 WVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS--------PYRFVGFVSL  142 (284)
Q Consensus        71 ~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~--------~~~~~g~~~~  142 (284)
                      ....+++++.|+|++.|++++.||++|+|+++++|.++   ++||++|.|+++++|+...++        ....+|.++.
T Consensus        11 ~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~   87 (259)
T 3hsq_A           11 PKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAG---SEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNI   87 (259)
T ss_dssp             TTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTT---EEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCE
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCC---cEECCCcEECCCCEECCCcccccccCccCCcEEECCCcE
Confidence            34578899999999999999999999999999999765   999999999999999654322        1223344443


Q ss_pred             eecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842          143 LIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP  221 (284)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~  221 (284)
                      +.+.......      +.....++||++|.|++++.| ++++||++|+|+.++.+.++++||++|+|+++++|.++..|+
T Consensus        88 Ig~~~~I~~~------~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig  161 (259)
T 3hsq_A           88 FREYSNIHKG------TKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVG  161 (259)
T ss_dssp             ECTTCEEECC------SBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEEC
T ss_pred             ECCCCEECCC------ccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCCEEC
Confidence            3332211100      001235788888888888888 579999999999999999999999999999999999999999


Q ss_pred             CCCEEeccCceeeccCCHH
Q 039842          222 TGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       222 ~~~vv~G~pa~~~~~~~~~  240 (284)
                      +++++.+. +.+.+++++.
T Consensus       162 ~~~~Vg~~-s~V~~dvp~~  179 (259)
T 3hsq_A          162 DYSMVAGL-AKVVQDVPPY  179 (259)
T ss_dssp             TTCEECSS-EEECSBBCTT
T ss_pred             CCCEECCC-CEEcccCCCC
Confidence            99997654 6666666543

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.80  E-value=2.7e-18  Score=151.66  Aligned_cols=158  Identities=12%  Similarity=0.133  Sum_probs=112.1

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCC-------cccccceeeeec
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSP-------YRFVGFVSLLID  145 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~-------~~~~g~~~~~~~  145 (284)
                      ..+++++.|++++.|++++.||++|+|+++++|.++   ++||++|.|+++++|+...++.       ...+|..+.+.+
T Consensus        18 a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~   94 (262)
T 2qia_A           18 ASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGH---TKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRE   94 (262)
T ss_dssp             CEECTTCEECTTCEECTTEEECTTCEECSSCEECSE---EEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECT
T ss_pred             CEECCCCEECCCCEECCCCEECCCcEECCCCEECCC---cEECCCCEEecceEECcCCccccccCCccceEECCCceeCC
Confidence            456677777777777777777777777777777544   7778888888777776543211       112222222222


Q ss_pred             ccccCCCCCccccccCC-cceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCC
Q 039842          146 LQMSCPRSNSLYIAWLP-AETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTG  223 (284)
Q Consensus       146 ~~~~~~~~~~~~~~~~~-~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~  223 (284)
                      ......      ..... .+++||++|+|++++.| ++++||++++|+.++.+.++++||++|+|+++++|.++..|+++
T Consensus        95 ~~~I~~------~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~~  168 (262)
T 2qia_A           95 SVTIHR------GTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAH  168 (262)
T ss_dssp             TCEEEC------CCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             CCEEcC------CccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCCEECCC
Confidence            110000      00001 25899999999999998 78999999999999999999999999999999999999999999


Q ss_pred             CEEeccCceeeccCCHH
Q 039842          224 ELWAGNPARFVRTLTHE  240 (284)
Q Consensus       224 ~vv~G~pa~~~~~~~~~  240 (284)
                      +++.+. +.+.+++++.
T Consensus       169 ~~ig~~-s~V~~~v~~~  184 (262)
T 2qia_A          169 VMVGGC-SGVAQDVPPY  184 (262)
T ss_dssp             CEECSS-CEECSBBCTT
T ss_pred             CEEccC-CEECCcCCCC
Confidence            997665 6666666543

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=99.80  E-value=6.5e-19  Score=151.23  Aligned_cols=148  Identities=16%  Similarity=0.178  Sum_probs=102.5

Q ss_pred             CCCcEEcCCcEEecceEECCCCEECC--------CCEEe-----cCCCcEEECCCCEECCCCEEecCCC--CCcccccce
Q 039842           76 AVDAYVAPNVVLAGQVTVCDGASVWP--------GSVLR-----GDLNKITVGFCSNVQERCVLHAAWN--SPYRFVGFV  140 (284)
Q Consensus        76 ~~~~~I~~~a~i~~~v~IG~~~~I~~--------~~~I~-----g~~~~v~IG~~~~I~~~~~I~~~~~--~~~~~~g~~  140 (284)
                      ..++++.+.. ..++++||++++|.+        .++++     ++.+.++||++|.|+++|+|.....  +...     
T Consensus         9 ~~~~~l~~~~-~~~~I~IG~~~~I~~~~~~~~~~~~v~~~~~~~~~~~~i~IG~~~~Ig~~v~i~~~g~~~h~~~-----   82 (212)
T 1xat_A            9 FRGKLLSEQV-SNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAE-----   82 (212)
T ss_dssp             TBCEESTTTC-CCTTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTT-----
T ss_pred             CcceEEeeec-ccCCEEEcCCeEECCcccCccccceeEeeccccCcccCEEEcCCCEECCCCEEEeCCCCccccc-----
Confidence            3455666543 357888888888875        24442     2245699999999999999853221  1100     


Q ss_pred             eeeecccccCCCCCccccccCCcce--EECCCCEECCCceee-ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCC
Q 039842          141 SLLIDLQMSCPRSNSLYIAWLPAET--SIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPG  217 (284)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~v--~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~  217 (284)
                                 .     .+.++...  .-++++.++.++.+. +++||++||||.+|+|.++++||++|+|+++++|.  
T Consensus        83 -----------~-----~s~~p~~~~~~~~~~~~i~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~--  144 (212)
T 1xat_A           83 -----------W-----ASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVT--  144 (212)
T ss_dssp             -----------S-----SCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC--
T ss_pred             -----------c-----ccccceeeecccccccccccCceecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEc--
Confidence                       0     00000000  001234455666564 58999999999999999999999999999999999  


Q ss_pred             CeeCCCCEEeccCceeecc-CCHHHHhhhhh
Q 039842          218 RRIPTGELWAGNPARFVRT-LTHEETLEIPK  247 (284)
Q Consensus       218 ~~I~~~~vv~G~pa~~~~~-~~~~~~~~~~~  247 (284)
                      ++||++++++|+||++++. +++++...+..
T Consensus       145 ~~vp~~~~~~G~Pa~~i~~~~~~~~~~~l~~  175 (212)
T 1xat_A          145 GDVEPYAIVGGNPARTIRKRFSDGDIQNLLE  175 (212)
T ss_dssp             SCBCTTEEEETTTTEEEEESSCHHHHHHHHH
T ss_pred             ccCCCCcEEEccCCEEEcccCCHHHHHHHHh
Confidence            7899999999999999987 45555544444

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.79  E-value=1.4e-18  Score=153.87  Aligned_cols=160  Identities=14%  Similarity=0.153  Sum_probs=123.0

Q ss_pred             CceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCC-------Ccccccceeeee
Q 039842           72 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS-------PYRFVGFVSLLI  144 (284)
Q Consensus        72 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~g~~~~~~  144 (284)
                      ...+++++.|+|++.|++++.||++|.|+++++|.++   ++||++|.|+++++|+...++       ....+|.++.+.
T Consensus        19 ~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig   95 (265)
T 4e6u_A           19 SAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGF---TRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIR   95 (265)
T ss_dssp             TCEECTTCEECTTCEECTTEEECTTCEECSSCEECSS---EEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEEC
T ss_pred             CCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCC---cEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEEC
Confidence            4567888888888899999999999999999999765   999999999999999764432       122344444443


Q ss_pred             cccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCC
Q 039842          145 DLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTG  223 (284)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~  223 (284)
                      +.........     ....+++||++|.|++++.| ++++||++|+|+.++.+.++++||++|+|+++++|.++..|+++
T Consensus        96 ~~~~I~~g~~-----~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~  170 (265)
T 4e6u_A           96 EHCSLHRGTV-----QDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSY  170 (265)
T ss_dssp             TTCEEECCCT-----TTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTT
T ss_pred             CceEECcccc-----cCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEECCC
Confidence            3221110000     01135889999999999988 78999999999999999999999999999999999999999999


Q ss_pred             CEEeccCceeeccCCHH
Q 039842          224 ELWAGNPARFVRTLTHE  240 (284)
Q Consensus       224 ~vv~G~pa~~~~~~~~~  240 (284)
                      +++.+. +.+.+++++.
T Consensus       171 ~~i~~~-svV~~dvp~~  186 (265)
T 4e6u_A          171 SMIGGA-SLILKDVPAY  186 (265)
T ss_dssp             CEECTT-CEECSBBCTT
T ss_pred             CEEcCC-CEEcccCCCC
Confidence            997664 5555655543

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.79  E-value=8.8e-19  Score=163.33  Aligned_cols=50  Identities=18%  Similarity=0.220  Sum_probs=36.3

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEE
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVL  126 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I  126 (284)
                      .+++++.|++++.|.+++.||++|.|++++.|.++   ++||++|.|+++|.|
T Consensus       246 ~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~---~~Ig~~~~ig~~~~i  295 (401)
T 2ggo_A          246 IIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPY---TILVEKNKIGASVEV  295 (401)
T ss_dssp             EECTTCEECTTCEEESSEEECTTCEECSSCEECTT---EEECSSCEEEETCEE
T ss_pred             EEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCC---cEECCCCEECCCCEE
Confidence            45666666677777777777777777777777544   777777777777777

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.79  E-value=2.6e-19  Score=170.94  Aligned_cols=118  Identities=19%  Similarity=0.230  Sum_probs=110.2

Q ss_pred             CceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCC
Q 039842           72 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCP  151 (284)
Q Consensus        72 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~  151 (284)
                      .+.++++++|+|++.+.+++.||++|.|++++.| ++   ++||++|.|+++|+|.                        
T Consensus       273 ~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I-~~---v~IG~~~~I~~~~~I~------------------------  324 (496)
T 3c8v_A          273 GAGSASGASVSGYAVIKGDTVIGENVLVSQRAYL-DN---AWMGKGSNAQENCYII------------------------  324 (496)
T ss_dssp             ---CCTTCEECTTSEEESSCEECTTCEECTTCEE-EE---EEECTTCEECTTCEEE------------------------
T ss_pred             CcccCCCcEECCCcEEeCCeEECCCCEECCCcEE-ec---eEecCCCEECCCceEe------------------------
Confidence            4578889999999999999999999999999999 45   9999999999999995                        


Q ss_pred             CCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCC----CEECCCCEEcCCCeeC--CCCeeCCCCE
Q 039842          152 RSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEG----SMVETHAILEAGSVLP--PGRRIPTGEL  225 (284)
Q Consensus       152 ~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~g----v~Ig~~~~I~a~s~V~--~~~~I~~~~v  225 (284)
                                  +++||++|+|+++++|++++||++|+||++|+|.++    ++||++|+|+++++|.  ++++||++++
T Consensus       325 ------------~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~  392 (496)
T 3c8v_A          325 ------------NSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHL  392 (496)
T ss_dssp             ------------EEEEEESCEECTTCEEESEEEEETCEECTTCEEECCSSSCEEECTTCEECTTCEEECSSCEEECSSEE
T ss_pred             ------------ceEeCCCCEECCCcEEcCceECCCcEECCCCEEeCCCCcceEECCCCEECCCCEEecCCCcEeCCCCE
Confidence                        489999999999999999999999999999999999    9999999999999999  9999999999


Q ss_pred             Eecc
Q 039842          226 WAGN  229 (284)
Q Consensus       226 v~G~  229 (284)
                      ++|+
T Consensus       393 v~G~  396 (496)
T 3c8v_A          393 VWGY  396 (496)
T ss_dssp             ECSE
T ss_pred             EEEE
Confidence            9987

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.79  E-value=3.6e-19  Score=152.85  Aligned_cols=109  Identities=19%  Similarity=0.289  Sum_probs=77.3

Q ss_pred             cEEECCCCEECCCCEEecCCC--CCcccccceeeeecccccCCCCCccccccCCcceEEC--CCCEECCCcee-eccEEC
Q 039842          111 KITVGFCSNVQERCVLHAAWN--SPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIE--RFVTIGAYCSL-RSCTIE  185 (284)
Q Consensus       111 ~v~IG~~~~I~~~~~I~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig--~~v~Ig~~~~I-~~v~Ig  185 (284)
                      .+.||++|.|+++|+|.....  +......                     .++. ..++  +.+.+..++.+ ++++||
T Consensus        58 ~v~IG~~~~I~~~v~i~~~~~~~h~~~~v~---------------------~~~~-~~~~~~~~~~~~~~~~~~g~v~IG  115 (212)
T 3eev_A           58 KLVIGSFCSIGSGAVFMMAGNQGHRSDWIS---------------------TFPF-FYQDNDNFADARDGFTRSGDTIIG  115 (212)
T ss_dssp             CEEECSSCEECTTCEEECSTTTTCCTTSSC---------------------CSCG-GGSCCGGGTTCCCCCCCCCCEEEC
T ss_pred             CcEECCCCEECCCCEEEeCCCCccccccee---------------------eccc-eeecccccccccCCcccCCCeEEC
Confidence            499999999999998854431  1111000                     0000 1111  12222333333 568999


Q ss_pred             CCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC-CHHHHh
Q 039842          186 PECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL-THEETL  243 (284)
Q Consensus       186 d~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~-~~~~~~  243 (284)
                      |+||||++|+|.++++||++|+|+++++|.  ++||++++++|+||++++.+ .+++..
T Consensus       116 ~~v~IG~~a~I~~gv~IG~~~iIgagsvV~--~dVp~~~vv~G~PAk~i~~~~~~~~~~  172 (212)
T 3eev_A          116 HDVWIGTEAMIMPGVKIGHGAIIASRSVVT--KDVAPYEVVGSNPAKHIKFRFSDVEIA  172 (212)
T ss_dssp             SSCEECTTCEECTTCEECTTCEECTTCEEC--SCBCTTEEEETTTTEEEEESSCHHHHH
T ss_pred             CCCEECCCCEEcCCCEECCCCEECCCCEEc--cccCCCcEEEecCCEEEeccCCHHHHH
Confidence            999999999999999999999999999999  89999999999999999874 444433

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.78  E-value=1.3e-17  Score=147.91  Aligned_cols=165  Identities=19%  Similarity=0.221  Sum_probs=113.6

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCC---------Ccccccceeee
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS---------PYRFVGFVSLL  143 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~---------~~~~~g~~~~~  143 (284)
                      ..++++++|+|++.|++++.||++++|+++++|.++   ++||++|.|+++|+|+.....         ....+|.++.+
T Consensus         3 ~~i~~~~~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~---v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I   79 (273)
T 3fs8_A            3 NNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDN---VHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALI   79 (273)
T ss_dssp             CEECTTCEECTTCEECSSEEECTTCEECTTCEECSS---EEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEE
T ss_pred             cccCCCeEECCCcEECCCCEECCCcEECCCCEECCC---CEECCCcEECCCcEeCCccccccccccccccceEECCCCEE
Confidence            468899999999999999999999999999999755   999999999999999875211         11334444444


Q ss_pred             ecccccCCC------CCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcC------------------
Q 039842          144 IDLQMSCPR------SNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILME------------------  198 (284)
Q Consensus       144 ~~~~~~~~~------~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~------------------  198 (284)
                      .........      ...........+++||+++.|+.++.+ +.++||++|+|+.++.|.+                  
T Consensus        80 ~~~~~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~~~i~~~~~i~~  159 (273)
T 3fs8_A           80 RTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTN  159 (273)
T ss_dssp             CTTCEEESSCEECTTCEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTTCEECTTCEECTTCEECC
T ss_pred             CCCCEEeCCCEECCCCEECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEECCCceeCCceeecCceEecC
Confidence            322111000      000111112234555555555555555 3577777777777777654                  


Q ss_pred             ----------CCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHHH
Q 039842          199 ----------GSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE  241 (284)
Q Consensus       199 ----------gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~~  241 (284)
                                +++||++|+|+++++|.+++.|++++++. ..+.+.+++++..
T Consensus       160 ~~~~~~~~~~~v~Ig~~~~IG~~~~I~~g~~IG~~~~Ig-agsvV~~dvp~~~  211 (273)
T 3fs8_A          160 DPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVG-AGAVVTKDVPKET  211 (273)
T ss_dssp             CSSSSCSCCCCCEECTTCEECTTCEECTTCEECTTCEEC-TTCEECSCBCTTE
T ss_pred             CCCCcccccCCcEECCCeEEcCCCEEcCCCEECCCCEEC-CCCEECccCCCCc
Confidence                      47888899999999999999999999864 5577777777653

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.77  E-value=1.4e-17  Score=147.60  Aligned_cols=162  Identities=13%  Similarity=0.149  Sum_probs=125.1

Q ss_pred             CCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCC--------Cccccccee
Q 039842           70 QWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS--------PYRFVGFVS  141 (284)
Q Consensus        70 ~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~--------~~~~~g~~~  141 (284)
                      .....+++++.|+|++.|++++.||++|.|+++++|.++   ++||++|.|+++++|+...++        ....+|.++
T Consensus        14 ~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~---~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~   90 (266)
T 3r0s_A           14 EEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSD---TTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNA   90 (266)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSS---CEECTTCEECTTCEEEECCSCSCCC----CEEEECTTC
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCC---cEECCCcEEccCceeccCCccccccCCcCceEEECCCC
Confidence            344578889999999999999999999999999999766   999999999999999754432        122344444


Q ss_pred             eeecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842          142 LLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI  220 (284)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I  220 (284)
                      .+.+........     ......++||++|.|++++.| ++++||++|+|+.++.+.++++||++|+|+++++|.+++.|
T Consensus        91 ~Ig~~~~I~~~~-----~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~I  165 (266)
T 3r0s_A           91 TIREFATINSGT-----AKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKV  165 (266)
T ss_dssp             EECTTCEEECCC-----TTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             EECCceEecCCc-----ccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCcEE
Confidence            443322111100     001134899999999999988 78999999999999999999999999999999999999999


Q ss_pred             CCCCEEeccCceeeccCCHH
Q 039842          221 PTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       221 ~~~~vv~G~pa~~~~~~~~~  240 (284)
                      ++++++.+.+ .+.+++++.
T Consensus       166 g~~a~Vg~~s-~V~~dvp~~  184 (266)
T 3r0s_A          166 GEGCMIAGAS-ALSQDIVPF  184 (266)
T ss_dssp             CTTCEECSSC-BBCSCBCTT
T ss_pred             CCCCEEccCC-eEecccCCC
Confidence            9999987764 444555543

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.76  E-value=4.6e-18  Score=156.03  Aligned_cols=67  Identities=16%  Similarity=0.159  Sum_probs=36.4

Q ss_pred             cceEECCCCEECCCceee-----------------------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCe
Q 039842          163 AETSIERFVTIGAYCSLR-----------------------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRR  219 (284)
Q Consensus       163 ~~v~Ig~~v~Ig~~~~I~-----------------------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~  219 (284)
                      .+++||++|+||++++|.                       +++||++|+|+.++.|.++++||++|+|+++++|.++..
T Consensus       199 g~v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~  278 (341)
T 3eh0_A          199 GRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHME  278 (341)
T ss_dssp             CCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEE
T ss_pred             CcEEECCCcEECCccEeeccccCceEeccceEECCCCEEeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCE
Confidence            357777777777776662                       344444444444444444555555555555555554445


Q ss_pred             eCCCCEEecc
Q 039842          220 IPTGELWAGN  229 (284)
Q Consensus       220 I~~~~vv~G~  229 (284)
                      |++++++.+.
T Consensus       279 Ig~~~vv~a~  288 (341)
T 3eh0_A          279 ICDKVTVTGM  288 (341)
T ss_dssp             ECSSEEECTT
T ss_pred             ECCCCEEeeC
Confidence            5555444443

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.76  E-value=2.2e-18  Score=155.66  Aligned_cols=75  Identities=15%  Similarity=0.209  Sum_probs=51.3

Q ss_pred             eEECCCCEECCCceee-----ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe--ccCceeeccC
Q 039842          165 TSIERFVTIGAYCSLR-----SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA--GNPARFVRTL  237 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~-----~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~--G~pa~~~~~~  237 (284)
                      ++||+++.++.++.+.     .++|||+|+||++|+|.++++||++|+||++++|.  .+||++++++  |+||++++++
T Consensus       202 vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~--~dVp~gs~vvi~G~PAkvik~~  279 (313)
T 3q1x_A          202 VTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNIIVGSHVRIGANCWID--RDVDSNQTVYISEHPTHFVKPC  279 (313)
T ss_dssp             CEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEESSCEECSSEEECTTCEEC--SCBCSSEEC-------------
T ss_pred             cEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECCCcEECCCCEECCCCEEC--CCcCCCCEEEEcCCCcEEEeeC
Confidence            5566666666665553     46999999999999999999999999999999999  8899999987  9999999987


Q ss_pred             CHHH
Q 039842          238 THEE  241 (284)
Q Consensus       238 ~~~~  241 (284)
                      ++..
T Consensus       280 ~~~~  283 (313)
T 3q1x_A          280 TTKG  283 (313)
T ss_dssp             ----
T ss_pred             cccc
Confidence            6543

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.74  E-value=4.2e-18  Score=146.85  Aligned_cols=120  Identities=18%  Similarity=0.236  Sum_probs=83.8

Q ss_pred             CCEECCCCEEecCCCcEEECCCCEECCCCEEecCC-CCCcccccceeeeecccccCCCCCccccccCCcceEECCC----
Q 039842           96 GASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAW-NSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERF----  170 (284)
Q Consensus        96 ~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~----  170 (284)
                      ++.+++.+.+.   ..++||++|.|+++|+|.... .+...  +                    +.++ ...++++    
T Consensus        53 ~~vi~~~~~i~---~~v~IG~~~~I~~gv~I~~~~~~h~~~--~--------------------~~~~-~~~i~~~~~~~  106 (219)
T 4e8l_A           53 DQVLYHYEVIG---DKLIIGRFCSIGPGTTFIMNGANHRMD--G--------------------STYP-FHLFRMGWEKY  106 (219)
T ss_dssp             GGEESCCTTTC---CCEEECSSCEECTTCEEECGGGCCCCS--S--------------------CCCC-GGGGCTTCGGG
T ss_pred             ceEEeecceeC---CCEEECCCCEEcCCCEEEeCCCcceec--C--------------------CCcc-eeEecCccccc
Confidence            45555555542   249999999999999997431 10000  0                    0000 0123332    


Q ss_pred             CEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC-CHHHHh
Q 039842          171 VTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL-THEETL  243 (284)
Q Consensus       171 v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~-~~~~~~  243 (284)
                      +.+..+..+ ++++|||+||||++|+|.++++||++|+|+++++|.  ++||++++++|+||++++.+ .+++..
T Consensus       107 ~~~~~~~~~~g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~--~dv~~~~~~~G~Pa~~i~~r~~~~~i~  179 (219)
T 4e8l_A          107 MPSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVT--KNVAPYSIVGGNPLKFIRKRFSDGVIE  179 (219)
T ss_dssp             CCCTTTSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEEC--SCBCTTEEEETTTTEEEEESSCHHHHH
T ss_pred             ccccccccccCCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEc--ccCCCCeEEEecCCEeecccCCHHHHH
Confidence            223333333 578999999999999999999999999999999999  78999999999999999874 444433

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.73  E-value=2.4e-17  Score=146.84  Aligned_cols=59  Identities=25%  Similarity=0.360  Sum_probs=54.0

Q ss_pred             eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842          180 RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       180 ~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      ..++|||+|+||++|+|.++++||++|+|+++++|.  ++||++++++|+||+++++...+
T Consensus       215 r~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~--kdVp~~svvvG~PAkii~~~~~~  273 (287)
T 3mc4_A          215 RHPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVL--KSVPHNVTVAGVPARIIGETGCT  273 (287)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECTTCEEC--SCBCTTEEEETTTTEEEEECC--
T ss_pred             cCCEECCCCEECCCCEECCCcEECCCCEECCCCEEc--cccCCCCEEEccCCEEeCcCCCc
Confidence            347999999999999999999999999999999999  89999999999999999887654

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.72  E-value=1.2e-16  Score=144.35  Aligned_cols=164  Identities=16%  Similarity=0.222  Sum_probs=112.2

Q ss_pred             CceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCC
Q 039842           72 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCP  151 (284)
Q Consensus        72 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~  151 (284)
                      ...+++++.|+|++.|++++.||++|.|+++++|.++   ++||++|.|+++++|+.+.. ....+|.++.+........
T Consensus        19 ~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~---~~IG~~~~I~~~a~I~~d~~-g~~~IG~~~~Ig~~a~Ig~   94 (305)
T 3t57_A           19 NAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGN---TELGESCVLMTGAVVGDELP-GYTFIGCNNIIGHHAVVGV   94 (305)
T ss_dssp             TSEECTTCEECTTCEECTTEEECTTCEECTTCEECSS---EEECTTCEECTTCEECCSSS-EEEEECSSCEECTTCEEEE
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCcEECCC---cEECCCcEEccCcEeccCCC-CceEECCceEECCccEeCc
Confidence            4568888888888888889999999999999999766   99999999999999975311 1112233333322211000


Q ss_pred             C--------C-----------------CccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCC
Q 039842          152 R--------S-----------------NSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETH  205 (284)
Q Consensus       152 ~--------~-----------------~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~  205 (284)
                      .        .                 .....+.....++||++++|+.++.| ++++||++|+|+.++.+.++++||++
T Consensus        95 ~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~v~Igd~  174 (305)
T 3t57_A           95 KCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDN  174 (305)
T ss_dssp             CCCCTTCCTTCCEEEEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSS
T ss_pred             cccccceecCCCceEEECCCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccCCCCEECCc
Confidence            0        0                 00000001234555666666666655 46778888888888888888999999


Q ss_pred             CEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842          206 AILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       206 ~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      |+|+++++|.+++.|++++++.+. +.+.+++++.
T Consensus       175 ~~Ig~~~~V~~~v~IG~~a~ig~g-s~V~~dvp~~  208 (305)
T 3t57_A          175 THTAGASVVHQFCHIGSFAFIGGG-SVVSQDVPKY  208 (305)
T ss_dssp             CEECTTCEECTTCEECTTCEECTT-CEECSBBCTT
T ss_pred             eEEcCCCEEcCCeEECCCCEEcCC-CeEcccCCCC
Confidence            999999999999999999996544 7777777765

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.72  E-value=4.3e-17  Score=137.53  Aligned_cols=110  Identities=16%  Similarity=0.181  Sum_probs=91.6

Q ss_pred             ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEE
Q 039842           88 AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSI  167 (284)
Q Consensus        88 ~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~I  167 (284)
                      ...+.||++++|++++.|.++   +.||++|.|+++++|....                                .+++|
T Consensus        31 ~~~~~ig~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~~--------------------------------~~i~I   75 (191)
T 3ixc_A           31 GVSPSVDSTAFIAGNARIIGD---VCIGKNASIWYGTVLRGDV--------------------------------DKIEV   75 (191)
T ss_dssp             TBCCEECTTSEECTTCEEEEE---EEECTTCEECTTCEEEEEE--------------------------------EEEEE
T ss_pred             CCCCEECCCCEECCCCEEeCC---cEECCCCEECCCCEEecCC--------------------------------CCeEE
Confidence            456778888888899998765   9999999999999996431                                14799


Q ss_pred             CCCCEECCCceee------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          168 ERFVTIGAYCSLR------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       168 g~~v~Ig~~~~I~------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                      |++|.|+++|.|.      +++||++|+||.++.|. +++||++|+|+++++|.+++.|++++++. ..+.+.
T Consensus        76 G~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~-~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig-~gsvV~  146 (191)
T 3ixc_A           76 GEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILH-ACTLGNNAFVGMGSIVMDRAVMEEGSMLA-AGSLLT  146 (191)
T ss_dssp             CTTCEECTTCEECC----CCEEECTTCEECTTCEEC-SCEECTTCEECTTCEECTTCEECTTCEEC-TTCEEC
T ss_pred             CCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEE-CCEECCCCEECCCCEEeCCeEECCCCEEC-CCCEEC
Confidence            9999999999997      89999999999999884 59999999999999998888888887754 334444

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=99.72  E-value=1.6e-17  Score=142.29  Aligned_cols=136  Identities=18%  Similarity=0.198  Sum_probs=92.2

Q ss_pred             CCcEEcCCcEEecc--eEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecC--CCCCcccccceeeeecccccCCC
Q 039842           77 VDAYVAPNVVLAGQ--VTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAA--WNSPYRFVGFVSLLIDLQMSCPR  152 (284)
Q Consensus        77 ~~~~I~~~a~i~~~--v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~--~~~~~~~~g~~~~~~~~~~~~~~  152 (284)
                      +++.|++.+.|.++  +.+ +++.|+.++.+.+   .++||++|.|+++|+|...  .+. ..  +  .           
T Consensus        28 ~~i~IG~~~~I~~~~~~~i-~~~~i~~~~~i~~---~v~IG~~~~Ig~gv~I~~~~~~h~-~~--~--~-----------   87 (209)
T 1mr7_A           28 ENVEVGEYSYYDSKNGETF-DKQILYHYPILND---KLKIGKFCSIGPGVTIIMNGANHR-MD--G--S-----------   87 (209)
T ss_dssp             TTEEECTTCEEECSSSCCG-GGGEESCCGGGCC---CEEECSSCEECTTCEEECGGGCCC-CS--S--C-----------
T ss_pred             CCeEECCCcEEcCCCceEE-eceEEeeccccCC---CEEECCCCEEcCCCEEEeCCCccc-cc--C--c-----------
Confidence            34444444444433  334 4566666665532   3999999999999988532  121 00  0  0           


Q ss_pred             CCccccccCCcceEECCC----CEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842          153 SNSLYIAWLPAETSIERF----VTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA  227 (284)
Q Consensus       153 ~~~~~~~~~~~~v~Ig~~----v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~  227 (284)
                             .+ ..++++++    +.+..++.+ ++++|||+|+||++++|.++++||++|+|+++++|.  ++||++++++
T Consensus        88 -------~~-~~~~i~~~~~~~~~i~~~~~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~--~~v~~~~i~~  157 (209)
T 1mr7_A           88 -------TY-PFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVV--KDIAPYMLAG  157 (209)
T ss_dssp             -------CC-CGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEEC--SCBCTTEEEE
T ss_pred             -------cc-cceEECCcccccccccccccccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEc--CCCCCCeEEE
Confidence                   00 01223333    233333333 568999999999999999999999999999999999  7899999999


Q ss_pred             ccCceeeccC-CHHHH
Q 039842          228 GNPARFVRTL-THEET  242 (284)
Q Consensus       228 G~pa~~~~~~-~~~~~  242 (284)
                      |+||++++.+ .+++.
T Consensus       158 G~Pa~~i~~~~~~~~~  173 (209)
T 1mr7_A          158 GNPANEIKQRFDQDTI  173 (209)
T ss_dssp             ETTEEEEEESSCHHHH
T ss_pred             eeCCEEeeccCCHHHH
Confidence            9999999874 44443

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.71  E-value=1.8e-16  Score=147.63  Aligned_cols=140  Identities=16%  Similarity=0.154  Sum_probs=94.4

Q ss_pred             CcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccc
Q 039842           78 DAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLY  157 (284)
Q Consensus        78 ~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  157 (284)
                      ...|++++.+.+++.||+++.|++++.|.++   +.||++|.|+++++|+...     .+|.++.+....          
T Consensus       232 ~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~-----~Ig~~~~ig~~~----------  293 (401)
T 2ggo_A          232 LGNVEDNVKIKGKVIIEEDAEIKSGTYIEGP---VYIGKGSEIGPNSYLRPYT-----ILVEKNKIGASV----------  293 (401)
T ss_dssp             CSEECSSCEEESCEEECTTCEECTTCEEESS---EEECTTCEECSSCEECTTE-----EECSSCEEEETC----------
T ss_pred             cceeCCCCEEcCCeEEcCCCEECCCCEEeCC---eEECCCCEECCCCEEcCCc-----EECCCCEECCCC----------
Confidence            3578888888888888888888888888755   8888888888888886322     233333333211          


Q ss_pred             cccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEc------------------------CCCEECCCCEEcCCCe
Q 039842          158 IAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILM------------------------EGSMVETHAILEAGSV  213 (284)
Q Consensus       158 ~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~------------------------~gv~Ig~~~~I~a~s~  213 (284)
                        .. .+++||+++.|++++.+.+++||++|+||+++.|.                        .+++||++|+||++++
T Consensus       294 --~i-~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~  370 (401)
T 2ggo_A          294 --EV-KESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVT  370 (401)
T ss_dssp             --EE-ESEEECTTCEEEESCEEESCEECTTCEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCE
T ss_pred             --EE-ecCEEcCCcEECCCceEcceEECCCcEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcE
Confidence              01 23566666777777777777777777777777775                        3677777777777777


Q ss_pred             eCCCCeeCCCCEEeccCceeeccCCH
Q 039842          214 LPPGRRIPTGELWAGNPARFVRTLTH  239 (284)
Q Consensus       214 V~~~~~I~~~~vv~G~pa~~~~~~~~  239 (284)
                      |.+++.|++++++. ..+.+.+++++
T Consensus       371 I~~gv~Ig~~~vi~-~gsvv~~~vp~  395 (401)
T 2ggo_A          371 ILPGVKIGAYARIY-PGAVVNRDVGY  395 (401)
T ss_dssp             ECTTCEECTTCEEC-TTCEECSCBCT
T ss_pred             EcCCcEECCCcEEC-CCCeEccccCC
Confidence            77777777777653 34555555554

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.71  E-value=7.5e-17  Score=137.25  Aligned_cols=114  Identities=18%  Similarity=0.267  Sum_probs=96.0

Q ss_pred             ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECC
Q 039842           90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIER  169 (284)
Q Consensus        90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~  169 (284)
                      ...||+++.|++++.|.+ ...+.||++|.|+++|+|..                                   +++||+
T Consensus        32 ~~~ig~~~~I~~~~~i~~-~~~v~IG~~~~I~~~~~I~~-----------------------------------~v~IG~   75 (205)
T 3vbi_A           32 FLSVGKNVLISKKASIYN-PGVISIGNNVRIDDFCILSG-----------------------------------KVTIGS   75 (205)
T ss_dssp             CSEECSSEEEBTTSEEES-GGGEEECSSEEECTTCEEEE-----------------------------------EEEECS
T ss_pred             CeEECCCCEECCCeEEcc-CCeeEECCCCEECCCCEEcc-----------------------------------ceEECC
Confidence            445777777778888864 23499999999999999953                                   489999


Q ss_pred             CCEECCCcee----eccEECCCCEECCCcEE-------------------------cCCCEECCCCEEcCCCeeCCCCee
Q 039842          170 FVTIGAYCSL----RSCTIEPECIIGQHSIL-------------------------MEGSMVETHAILEAGSVLPPGRRI  220 (284)
Q Consensus       170 ~v~Ig~~~~I----~~v~Igd~v~IG~~s~I-------------------------~~gv~Ig~~~~I~a~s~V~~~~~I  220 (284)
                      +|.|+++|.|    ++++|||+|+||.+++|                         ..+++||++|+|+++++|.+++.|
T Consensus        76 ~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~I  155 (205)
T 3vbi_A           76 YSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVI  155 (205)
T ss_dssp             SEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEE
T ss_pred             CCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCcccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEE
Confidence            9999999999    45999999999999999                         578999999999999999999999


Q ss_pred             CCCCEEeccCceeeccCCHH
Q 039842          221 PTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       221 ~~~~vv~G~pa~~~~~~~~~  240 (284)
                      ++++++ |..+.+.+++++.
T Consensus       156 g~~~~I-g~gsvV~~~v~~~  174 (205)
T 3vbi_A          156 GEGVAV-GAMSMVKESLDDW  174 (205)
T ss_dssp             CTTCEE-CTTCEECSCBCTT
T ss_pred             CCCCEE-cCCCEECCccCCC
Confidence            999885 5557777776654

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.70  E-value=8.7e-17  Score=134.78  Aligned_cols=109  Identities=16%  Similarity=0.167  Sum_probs=90.9

Q ss_pred             cceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEEC
Q 039842           89 GQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIE  168 (284)
Q Consensus        89 ~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig  168 (284)
                      ....||++++|++++.|.++   +.||++|.|+++++|....                                .+++||
T Consensus        14 ~~~~ig~~~~I~~~~~i~~~---v~IG~~~~I~~~~~i~~~~--------------------------------~~i~IG   58 (187)
T 3r3r_A           14 LFPGIGQRVMIDTSSVVIGD---VRLADDVGIWPLVVIRGDV--------------------------------NYVAIG   58 (187)
T ss_dssp             BCCEECTTCEECTTCEEEEE---EEECTTCEECTTCEEEEEE--------------------------------EEEEEC
T ss_pred             cCcccCCCeEECCCCEEECc---eEECCCCEECCCcEEEcCC--------------------------------ccEEEC
Confidence            35678888888889988765   9999999999999996431                                137999


Q ss_pred             CCCEECCCcee------------eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          169 RFVTIGAYCSL------------RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       169 ~~v~Ig~~~~I------------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                      ++|.|+++|.|            ++++||++|+||.++.|. +++||++|+|+++++|.+++.|++++++ |..+.+.
T Consensus        59 ~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~-~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~I-g~~s~V~  134 (187)
T 3r3r_A           59 ARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLH-GCTIGNRVLVGMGSIVLDGAIIEDDVMI-GAGSLVP  134 (187)
T ss_dssp             TTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEE-SCEECSSEEECTTCEECTTCEECSSEEE-CTTCEEC
T ss_pred             CCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEe-CcEECCCCEECCCCEECCCCEECCCCEE-CCCCEEC
Confidence            99999999999            779999999999999884 5999999999999999888888888775 3444444

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.70  E-value=7.8e-17  Score=145.23  Aligned_cols=58  Identities=12%  Similarity=0.173  Sum_probs=48.9

Q ss_pred             eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCH
Q 039842          180 RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTH  239 (284)
Q Consensus       180 ~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~  239 (284)
                      ..++|||+|+||++|+|.++++||++|+||++++|.  .+||++++++|+|++..+...+
T Consensus       250 ~~~~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~--~dVp~~svv~GnPAk~~~~~~~  307 (310)
T 3f1x_A          250 RHPILEDDVIVYSNATILGRVTIGKGATVGGNIWVT--ENVPAGSRIVQRKNKDELEHHH  307 (310)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECSSCEEC--SCBCTTCEECCCCCC-------
T ss_pred             CCCEECCCcEEcCCCEECCCcEECCCCEECCCCEEC--CccCCCcEEECCCcccCCcccc
Confidence            456999999999999999999999999999999999  8999999999999998766543

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.70  E-value=1e-16  Score=141.76  Aligned_cols=58  Identities=26%  Similarity=0.280  Sum_probs=51.6

Q ss_pred             eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCH
Q 039842          180 RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTH  239 (284)
Q Consensus       180 ~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~  239 (284)
                      ..++|||+|+||++++|.++++||++|+|+++++|.  ++||++++++|+||++++....
T Consensus       188 ~~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~--~dVp~~~~v~G~PAr~i~~~~~  245 (267)
T 1ssq_A          188 RHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVL--NPVPEYATAAGVPARIVSQDKA  245 (267)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECTTCEEC--SCBCTTCEEETTTTEECC----
T ss_pred             CCeEECCCeEEcCCCEEeCCcEECCCCEECCCCEEc--cCCCCCCEEEecCcEEeccCCC
Confidence            457999999999999999999999999999999999  8999999999999999887553

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.70  E-value=1.2e-16  Score=132.65  Aligned_cols=110  Identities=20%  Similarity=0.303  Sum_probs=91.2

Q ss_pred             ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEE
Q 039842           88 AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSI  167 (284)
Q Consensus        88 ~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~I  167 (284)
                      ...+.||++++|++++.|.++   +.||++|.|+++++|....                                ..++|
T Consensus        10 ~~~~~ig~~~~I~~~~~i~~~---v~IG~~~~I~~~~~i~~~~--------------------------------~~v~I   54 (173)
T 1xhd_A           10 EKKPKIASSAFIADYVTITGD---VYVGEESSIWFNTVIRGDV--------------------------------SPTII   54 (173)
T ss_dssp             TBCCEECTTCEECTTCEEEEE---EEECTTCEECTTCEEEEEE--------------------------------EEEEE
T ss_pred             CCCCEECCCcEECCCCEEECC---EEECCCcEEcCCcEEecCC--------------------------------CeEEE
Confidence            456789999999999999765   9999999999999996421                                14899


Q ss_pred             CCCCEECCCceee-----ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          168 ERFVTIGAYCSLR-----SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       168 g~~v~Ig~~~~I~-----~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                      |++|.|+++|.|.     +++||++|.||.++.|. +++||++|+|+++++|.++..|++++++. ..+.+.
T Consensus        55 G~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~-~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig-~~s~V~  124 (173)
T 1xhd_A           55 GDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILH-SCHIKKDALIGMGSIILDGAEIGEGAFIG-AGSLVS  124 (173)
T ss_dssp             CTTCEECTTCEEECCTTCCEEECTTCEECTTCEEE-SCEECTTCEECTTCEECTTCEECTTCEEC-TTCEEC
T ss_pred             CCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEe-CCEECCCCEEcCCCEEcCCCEECCCCEEC-CCCEEC
Confidence            9999999999997     79999999999999884 58888888888888888888888887754 334443

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.70  E-value=7.8e-17  Score=143.80  Aligned_cols=57  Identities=30%  Similarity=0.362  Sum_probs=53.6

Q ss_pred             eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCC
Q 039842          180 RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLT  238 (284)
Q Consensus       180 ~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~  238 (284)
                      +.++|||+|+||++|+|.++++||++|+|+++++|.  .+||++++++|+||++++...
T Consensus       208 ~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~--~dVp~~s~v~G~PAr~i~~~~  264 (289)
T 1t3d_A          208 RHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVL--QPVPPHTTAAGVPARIVGKPD  264 (289)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECTTCEEC--SCBCTTCEEETTTTEEEECCS
T ss_pred             CCeEECCCeEECCCCEEecCcEECCCCEECCCCEEc--cCCCCCCEEEecCCEEeCcCC
Confidence            457999999999999999999999999999999999  789999999999999998765

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.70  E-value=2e-16  Score=135.59  Aligned_cols=150  Identities=13%  Similarity=0.109  Sum_probs=101.5

Q ss_pred             EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceE
Q 039842           87 LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETS  166 (284)
Q Consensus        87 i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~  166 (284)
                      ......|+++++|++++.|.++   +.||++|.|+++++|.....                               .+++
T Consensus        36 ~~~~~~i~~~~~I~~~a~i~~~---v~IG~~~~I~~~~~I~~~~~-------------------------------~~v~   81 (213)
T 3kwd_A           36 DLAEPEIAPTAYVHSFSNLIGD---VRIKDYVHIAPGTSIRADEG-------------------------------TPFH   81 (213)
T ss_dssp             -CCCCEECTTCEECTTSEEEES---EEECTTCEECTTCEEEESSS-------------------------------CCEE
T ss_pred             cCCCCcCCCCCEECCCCEEeCc---eEECCCCEEcCCcEEecCCC-------------------------------CceE
Confidence            3446678899999999999876   99999999999999976421                               2489


Q ss_pred             ECCCCEECCCceeec---------------cEECCCCEECCCcEEcCCCEECCCCEEcCCCe-----eCCCCeeCCCCEE
Q 039842          167 IERFVTIGAYCSLRS---------------CTIEPECIIGQHSILMEGSMVETHAILEAGSV-----LPPGRRIPTGELW  226 (284)
Q Consensus       167 Ig~~v~Ig~~~~I~~---------------v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~-----V~~~~~I~~~~vv  226 (284)
                      ||++|.|+++|+|..               ++||++|+|+.++.|.++++||++|+|+++++     |++++.|++++++
T Consensus        82 IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V  161 (213)
T 3kwd_A           82 IGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLI  161 (213)
T ss_dssp             ECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEE
T ss_pred             ECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcCCCEECCCCEECCCCEEeCcEECCCCEEcCCCEE
Confidence            999999999999974               89999999999999988899999999999888     4555555555555


Q ss_pred             ecc---Cceeecc---CC-HHHHhhhhhhHHHHHHHHHHHHhccccchHHH
Q 039842          227 AGN---PARFVRT---LT-HEETLEIPKLAVAINDLSKSHFSEFLPYSTVY  270 (284)
Q Consensus       227 ~G~---pa~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (284)
                      .+.   +...+..   +. ....+.++.......++.++..+.+.++.+.|
T Consensus       162 ~~~~i~~~~~v~~~~vv~~g~pa~~i~~~~~~~~~~~~~v~~~~~~l~~~y  212 (213)
T 3kwd_A          162 QDVEIPPGKYVPSGMVITTQQQADRLPNVEESDIHFAQHVVGINEALLSGY  212 (213)
T ss_dssp             ESCEECTTBEECTTCEECSHHHHTTCCBCCHHHHHHHHHHC----------
T ss_pred             CCcEeCCCCEECCCcEEcCCCCccccccCCHHHHHHHHHHHHHHHHHHHhc
Confidence            211   1111111   11 22344555555666666666666566666555

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.69  E-value=2.8e-16  Score=132.77  Aligned_cols=105  Identities=15%  Similarity=0.159  Sum_probs=81.4

Q ss_pred             EEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcce
Q 039842           86 VLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAET  165 (284)
Q Consensus        86 ~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v  165 (284)
                      ++..++.|+++++|++++.|.++   ++||++|+|+++|+|.+...                                ++
T Consensus         8 k~~~~v~I~~~a~I~~~a~I~g~---V~IG~~~~I~~~~~I~~~~g--------------------------------~i   52 (194)
T 3tv0_A            8 KTQKSVKIAPGAVVCVESEIRGD---VTIGPRTVIHPKARIIAEAG--------------------------------PI   52 (194)
T ss_dssp             ----CEEECTTCEECTTSEEESS---EEECTTCEECTTCEEEESSS--------------------------------CE
T ss_pred             hcCCCCEECCCCEEcCCCEEeCC---CEECCCCEECCCCEEccCCC--------------------------------Ce
Confidence            45668889999999999999877   99999999999999976432                                48


Q ss_pred             EECCCCEECCCceee-----------------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842          166 SIERFVTIGAYCSLR-----------------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW  226 (284)
Q Consensus       166 ~Ig~~v~Ig~~~~I~-----------------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv  226 (284)
                      +||++|.|+++|+|.                 +++||++++|+.++.+ .++.||++++|++++.|.+++.|++++++
T Consensus        53 ~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~I  129 (194)
T 3tv0_A           53 VIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGCYS-QAMKMGDNNVIESKAYVGRNVILTSGCII  129 (194)
T ss_dssp             EECTTCEECTTCEEEECCCSCC---------CCEEECSSCEECTTCEE-CCSEECSSCEECTTCEECTTEEECSSCEE
T ss_pred             EECCCccccCCcccccccccccccccccCcCCceEECCcceEecceeE-eeeeecccceecceeeECCeEEECCCCEE
Confidence            999999999999983                 4789999999998876 45666666666666666666666666553

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.69  E-value=2.1e-16  Score=132.51  Aligned_cols=108  Identities=17%  Similarity=0.178  Sum_probs=89.7

Q ss_pred             ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECC
Q 039842           90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIER  169 (284)
Q Consensus        90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~  169 (284)
                      ...||+++.|++++.|.++   +.||++|.|+++++|....                                .+++||+
T Consensus        19 ~~~ig~~~~I~~~~~i~~~---v~IG~~~~I~~~~~i~~~~--------------------------------~~i~IG~   63 (189)
T 3r1w_A           19 SPKLGERVFVDRSSVIIGD---VELGDDCSVWPLAVIRGDM--------------------------------HHIRIGA   63 (189)
T ss_dssp             CCEECTTCEECTTCEEEEE---EEECTTCEECTTCEEEEEE--------------------------------EEEEECT
T ss_pred             CCEECCCcEECCCCEEeee---eEECCCCEECCCCEEecCC--------------------------------CceEECC
Confidence            4568888888888888765   9999999999999996421                                1479999


Q ss_pred             CCEECCCceeec------------cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          170 FVTIGAYCSLRS------------CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       170 ~v~Ig~~~~I~~------------v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                      +|.|++++.|..            ++||++|+||.++.|.+ ++||++|+|+++++|.+++.|++++++. ..+.+.
T Consensus        64 ~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig-~~s~V~  138 (189)
T 3r1w_A           64 RTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHG-CTIGNRVLIGMKSMIMDGAIVEDEVIVA-AGATVS  138 (189)
T ss_dssp             TCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEES-CEECSSEEECTTCEECTTCEECSSCEEC-TTCEEC
T ss_pred             CCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeC-cEECCCcEECCCCEEcCCCEECCCCEEc-cCCEEC
Confidence            999999999965            49999999999999865 9999999999999998888888887754 334444

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.69  E-value=4.6e-17  Score=145.41  Aligned_cols=123  Identities=20%  Similarity=0.231  Sum_probs=84.5

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS  153 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (284)
                      .+++++.|+|.++|..++.||+++.|+++++|.-+   ..|+.+|.|...+.                            
T Consensus       157 vI~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVnig---a~Ig~g~~In~~i~----------------------------  205 (332)
T 3fsy_A          157 VVPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYN---AGTLGASMVEGRIS----------------------------  205 (332)
T ss_dssp             CCCTTCEESCGGGBBTTEEECTTCEECTTCEECTT---EEESSCCEECSEEC----------------------------
T ss_pred             ecCCCcEECCcCEECCCCEECCCCEEccccEEEEC---CeECcCCEECCcee----------------------------
Confidence            35677788888888888888888888877776422   44555554433211                            


Q ss_pred             CccccccCCcceEECCCCEECCCceeec---------cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCe-----
Q 039842          154 NSLYIAWLPAETSIERFVTIGAYCSLRS---------CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRR-----  219 (284)
Q Consensus       154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~---------v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~-----  219 (284)
                               .+++||++|.|++++.|.+         ++|||+|+||++++|  +++||++|+|++|++|..++.     
T Consensus       206 ---------iGv~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkdt~I~~~~  274 (332)
T 3fsy_A          206 ---------AGVVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAGTRVTMPD  274 (332)
T ss_dssp             ---------TTCEECTTCEECTTCEECSBCC---CCBCEECTTCEECTTCEE--CSCBCSSCEECTTCEECTTCEEECTT
T ss_pred             ---------cceEECCCCEECCCCEEcCCCCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEEEeCC
Confidence                     1267888888888887754         788888888888888  788888888888888876544     


Q ss_pred             ---eCCCCEEeccCceeeccCC
Q 039842          220 ---IPTGELWAGNPARFVRTLT  238 (284)
Q Consensus       220 ---I~~~~vv~G~pa~~~~~~~  238 (284)
                         +|++.+..++|+.+.+.-.
T Consensus       275 g~~v~a~el~g~~~~~f~r~s~  296 (332)
T 3fsy_A          275 SNSVKARELSGSSNLLFRRNSV  296 (332)
T ss_dssp             SCEEEGGGGTTCSSEEEEECTT
T ss_pred             CCEEEhHHhcCCCCCEEEecCC
Confidence               3444444567777776543

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.68  E-value=2.1e-16  Score=151.87  Aligned_cols=72  Identities=22%  Similarity=0.422  Sum_probs=64.9

Q ss_pred             ceEECCCCEECCCcee--------eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE-EeccCceee
Q 039842          164 ETSIERFVTIGAYCSL--------RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL-WAGNPARFV  234 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I--------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v-v~G~pa~~~  234 (284)
                      +++||++|.||++|++        +.++|||+|+||++|.|.++++||++|+|++|++|+  ++||++++ ++|+|++.+
T Consensus       386 d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~--~dvp~~~l~~~~~~~~~~  463 (501)
T 3st8_A          386 DADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVR--EDVPPGALAVSAGPQRNI  463 (501)
T ss_dssp             SEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEEC--SCBCTTCEECCCCCCCCC
T ss_pred             CceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEECCCCEECCCCEEC--cccCCCCeEEeccCceec
Confidence            5899999999999988        359999999999999999999999999999999999  99999996 566899876


Q ss_pred             ccC
Q 039842          235 RTL  237 (284)
Q Consensus       235 ~~~  237 (284)
                      +.+
T Consensus       464 ~~w  466 (501)
T 3st8_A          464 ENW  466 (501)
T ss_dssp             TTH
T ss_pred             cch
Confidence            553

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.68  E-value=7.2e-17  Score=145.13  Aligned_cols=105  Identities=16%  Similarity=0.247  Sum_probs=87.7

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS  153 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (284)
                      .+++++.|+|.++|..++.||+++.|++++.|..+   +.||++|.|..++.+                           
T Consensus       180 vI~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~n---a~IGdg~iI~~~a~i---------------------------  229 (347)
T 3r5d_A          180 VVPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFN---AGTEGPGMIEGRVSA---------------------------  229 (347)
T ss_dssp             CCCTTEEESSGGGBBTTEEECTTEEECTTCEECTT---EEESSSEEECSEECT---------------------------
T ss_pred             eccCCcEECCcCEECCCCEECCCCEECCCCEECCC---CEECCCcEEcCCceE---------------------------
Confidence            46778888888888888888888888888887533   666666666665433                           


Q ss_pred             CccccccCCcceEECCCCEECCCceeec---------cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842          154 NSLYIAWLPAETSIERFVTIGAYCSLRS---------CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI  220 (284)
Q Consensus       154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~---------v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I  220 (284)
                                .++||++|.|+++|.|.+         ++|||+|+||++++|  +++||++|+|++|++|.+++.|
T Consensus       230 ----------gv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI--GVtIGd~~iIGAGSVVtkdt~I  293 (347)
T 3r5d_A          230 ----------GVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGI--GIPLGDRNIVEAGLYITAGTKV  293 (347)
T ss_dssp             ----------TCEECTTEEECTTCEECC------CCCCEECTTCEECTTCEE--CSCBCTTCEECTTCEECTTCEE
T ss_pred             ----------eEEECCCCEECCCCEEccccCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEE
Confidence                      278999999999999965         899999999999999  9999999999999999977766

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.65  E-value=7.1e-16  Score=135.22  Aligned_cols=115  Identities=17%  Similarity=0.264  Sum_probs=98.0

Q ss_pred             ceeCCCcEEcCCcEEecc----eEECCCCEECCCCEEecCC--------------------CcEEECCCCEECCCCEEec
Q 039842           73 PKVAVDAYVAPNVVLAGQ----VTVCDGASVWPGSVLRGDL--------------------NKITVGFCSNVQERCVLHA  128 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~----v~IG~~~~I~~~~~I~g~~--------------------~~v~IG~~~~I~~~~~I~~  128 (284)
                      ..++++++|++++.|.++    +.||++|.|++++.|....                    ..++||++|.|+++|.|..
T Consensus        78 v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~~  157 (247)
T 1qre_A           78 VTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHG  157 (247)
T ss_dssp             EEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEEE
T ss_pred             cEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEECCCCEEcC
Confidence            357788888888888664    4999999999999997431                    2489999999999999963


Q ss_pred             CCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          129 AWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       129 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                                                         +++||++|+||.+++|.+++||++|+||++++| +++.|+++++|
T Consensus       158 -----------------------------------~~~Ig~~v~IG~~a~I~~v~Ig~~~~IgagsvV-~~~~I~~~~~v  201 (247)
T 1qre_A          158 -----------------------------------PAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAA-IGVTIPDGRYI  201 (247)
T ss_dssp             -----------------------------------EEEECTTCEECTTCEEEEEEECTTCEECTTCEE-ESCEECTTBEE
T ss_pred             -----------------------------------CcEECCCCEECCCCEEeceEECCCCEECCCCEE-CCeEeCCCCEE
Confidence                                               389999999999999977999999999999999 99999999999


Q ss_pred             cCCCeeCCCCeeCCCCE
Q 039842          209 EAGSVLPPGRRIPTGEL  225 (284)
Q Consensus       209 ~a~s~V~~~~~I~~~~v  225 (284)
                      +++++|.  ..+|+..+
T Consensus       202 ~~g~vv~--~~~pa~~i  216 (247)
T 1qre_A          202 PAGMVVT--SQAEADKL  216 (247)
T ss_dssp             CTTCEEC--SHHHHHTC
T ss_pred             CCCCEEe--cCcchhhh
Confidence            9999998  55555544

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.63  E-value=8.5e-16  Score=145.20  Aligned_cols=152  Identities=13%  Similarity=0.210  Sum_probs=101.0

Q ss_pred             CcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCc
Q 039842           84 NVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPA  163 (284)
Q Consensus        84 ~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  163 (284)
                      .+.+.+++.||+++.|++++.|.++   ++||++|.|+++|+|....-.....++.++.+.+.. ...+...........
T Consensus       259 ~~~i~~~~~ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~-ig~~~~I~~~~~i~~  334 (456)
T 2v0h_A          259 RFDLRGTLEHGKDVEIDVNVIIEGN---VKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSI-VGEKAAIGPFSRLRP  334 (456)
T ss_dssp             GEEEEEEEEECSSCEECSSEEEEEE---EEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEE-ECTTCEECSSEEECT
T ss_pred             ccEEcCceEECCCCEEcCCcEEcCC---cEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCc-CCCCcEECCccEECC
Confidence            5667788888888888888888655   888999888888888522111122222222222110 001111111112223


Q ss_pred             ceEECCCCEECCCceee-----------------ccEECCCCEECCCcEEcC-------CCEECCCCEEcCCCeeCCCCe
Q 039842          164 ETSIERFVTIGAYCSLR-----------------SCTIEPECIIGQHSILME-------GSMVETHAILEAGSVLPPGRR  219 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I~-----------------~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~a~s~V~~~~~  219 (284)
                      +++||++|.||+++.|.                 +++||++|+||++++|..       +++||++|+||++++|.++..
T Consensus       335 ~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~  414 (456)
T 2v0h_A          335 GAELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVK  414 (456)
T ss_dssp             TCEECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEE
T ss_pred             CCEECCCCEECCCCEEeccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcE
Confidence            45666666666555442                 368999999999999976       899999999999999999999


Q ss_pred             eCCCCEEeccCceeeccCCHH
Q 039842          220 IPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       220 I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      |++++++++. +.+.+++++.
T Consensus       415 Ig~~~~ig~~-s~v~~~v~~~  434 (456)
T 2v0h_A          415 VANGATIGAG-TTITRDVGEN  434 (456)
T ss_dssp             ECTTCEECTT-CEECSCBCTT
T ss_pred             ECCCCEECCC-CEECCCcCCC
Confidence            9999997554 6666776654

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.63  E-value=2.5e-15  Score=124.64  Aligned_cols=108  Identities=19%  Similarity=0.261  Sum_probs=87.9

Q ss_pred             ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECC
Q 039842           90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIER  169 (284)
Q Consensus        90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~  169 (284)
                      ...|+++++|++++.|.++   +.||++|.|+++++|....                                .+++||+
T Consensus        10 ~~~i~~~~~I~~~a~i~g~---v~IG~~~~I~~~~~i~~~~--------------------------------~~~~IG~   54 (173)
T 1v3w_A           10 KPRIHPSAFVDENAVVIGD---VVLEEKTSVWPSAVLRGDI--------------------------------EQIYVGK   54 (173)
T ss_dssp             CCEECTTCEECTTSEEEEE---EEECTTCEECTTCEEEEEE--------------------------------EEEEECT
T ss_pred             CCEECCCCEECCCCEEeCC---EEECCCCEECCCeEEecCC--------------------------------ceEEECC
Confidence            5678889999999999765   9999999999999996421                                1489999


Q ss_pred             CCEECCCceee-----ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          170 FVTIGAYCSLR-----SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       170 ~v~Ig~~~~I~-----~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                      +|.|+++|.|.     +++||++|.|+.++.| .+++||++|+|++++.|.++..|++++++ |.-+.+.
T Consensus        55 ~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~I-g~~s~V~  122 (173)
T 1v3w_A           55 YSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMV-HGAKVGNYVIIGISSVILDGAKIGDHVII-GAGAVVP  122 (173)
T ss_dssp             TCEECTTCEEECBTTBCEEECSSCEECTTCEE-ESCEECSSEEECTTCEECTTCEECSSEEE-CTTCEEC
T ss_pred             CCEECCCcEEEecCCCCeEECCCCEECCCCEE-CCCEECCCCEECCCCEEeCCCEECCCCEE-CCCCEEC
Confidence            99999999997     5899999999999988 45888888888888888777777777664 3334443

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.62  E-value=1.8e-15  Score=136.53  Aligned_cols=142  Identities=22%  Similarity=0.244  Sum_probs=86.1

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS  153 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (284)
                      .++++++|++++.|.++ .|+.++.|+++|.|...   ++||++|.||++|.|+........                  
T Consensus       137 ~I~~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~---~~Ig~~~~IG~~v~I~~~~~i~~~------------------  194 (304)
T 3eg4_A          137 IVRHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTW---ATVGSCAQIGKNVHLSGGVGIGGV------------------  194 (304)
T ss_dssp             EEBTTCEECTTCEECSE-EECTTCEECTTCEECTT---EEECTTCEECTTCEECTTCEECCC------------------
T ss_pred             EECCCcEECCCCEEeCC-EECCCCEECCCcEEcCC---cEECCCCccCCCcEECCCCEECCc------------------
Confidence            34444444444444443 44456677777766432   667777777777777554321000                  


Q ss_pred             CccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCE-------EcCCCeeCCCCee-----
Q 039842          154 NSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAI-------LEAGSVLPPGRRI-----  220 (284)
Q Consensus       154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~-------I~a~s~V~~~~~I-----  220 (284)
                         .......+++||++|+||++|+| ++++||++|+||++++|.++++|+++++       |+++++|.+++.+     
T Consensus       195 ---~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Igd~~~g~~~~~~Ip~~svV~~Gs~v~kd~~  271 (304)
T 3eg4_A          195 ---LEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVFYGEVPPYSVVVAGTMPGKNVP  271 (304)
T ss_dssp             ---CSSTTCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEECCCCT
T ss_pred             ---cccCccCCeEEcCCCEECCCCEEcCCcEECCCcEECCCCEEcCCeEECccceeeeccCEeCCCCEEecCcEecCCCC
Confidence               00112346999999999999976 6899999999999999998875555432       4444444433333     


Q ss_pred             -CC--CCEEeccCceeeccCCHH
Q 039842          221 -PT--GELWAGNPARFVRTLTHE  240 (284)
Q Consensus       221 -~~--~~vv~G~pa~~~~~~~~~  240 (284)
                       .+  .+++.+.+.+.+.+.+..
T Consensus       272 G~P~g~~~~~A~iik~~~~~t~~  294 (304)
T 3eg4_A          272 GENWGPSLYCAVIVKRADEKTRS  294 (304)
T ss_dssp             TSSCCCEEEEEEEEEECCHHHHH
T ss_pred             CCcCcccccceEEEEEccccchh
Confidence             12  455666666666554443

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.59  E-value=5.7e-15  Score=129.78  Aligned_cols=119  Identities=19%  Similarity=0.270  Sum_probs=96.7

Q ss_pred             ecceEECCCCEECCCCEE-ecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceE
Q 039842           88 AGQVTVCDGASVWPGSVL-RGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETS  166 (284)
Q Consensus        88 ~~~v~IG~~~~I~~~~~I-~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~  166 (284)
                      .+++.|++++.|.+.+.+ .++...+.||++|.|+++++|..+                                 .+++
T Consensus        61 ~~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g---------------------------------~~v~  107 (252)
T 3jqy_B           61 NNKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKG---------------------------------SKVI  107 (252)
T ss_dssp             SCEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESS---------------------------------CEEE
T ss_pred             CCEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccC---------------------------------CEEE
Confidence            356888888888775555 455567899999999999999643                                 2589


Q ss_pred             ECCCCEECCCceee----ccEECCCCEECCCcEEcCC-------------------CEECCCCEEcCCCeeCCCCeeCCC
Q 039842          167 IERFVTIGAYCSLR----SCTIEPECIIGQHSILMEG-------------------SMVETHAILEAGSVLPPGRRIPTG  223 (284)
Q Consensus       167 Ig~~v~Ig~~~~I~----~v~Igd~v~IG~~s~I~~g-------------------v~Ig~~~~I~a~s~V~~~~~I~~~  223 (284)
                      ||++|.|+++|.|.    .++||++|.||.+++|...                   ++||++|+||++++|.+++.|+++
T Consensus       108 IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~  187 (252)
T 3jqy_B          108 IGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSG  187 (252)
T ss_dssp             ECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTT
T ss_pred             ECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCC
Confidence            99999999999998    7999999999999998776                   789999999999999888888888


Q ss_pred             CEEeccCceeeccCCHH
Q 039842          224 ELWAGNPARFVRTLTHE  240 (284)
Q Consensus       224 ~vv~G~pa~~~~~~~~~  240 (284)
                      +++ |..+.+.+++++.
T Consensus       188 ~~I-gagsvV~~~vp~~  203 (252)
T 3jqy_B          188 SVI-GYGSIVTKDVPSM  203 (252)
T ss_dssp             CEE-CTTCEECSCBCTT
T ss_pred             CEE-CCCCEECcccCCC
Confidence            885 4445665665543

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.58  E-value=9.8e-15  Score=133.16  Aligned_cols=160  Identities=6%  Similarity=0.001  Sum_probs=93.6

Q ss_pred             CceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCC
Q 039842           72 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCP  151 (284)
Q Consensus        72 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~  151 (284)
                      ...+++++.|+++++|.+++.||++|.|+++|.|. +   ++||+++.|+++++|....-.....++.+..+.+..+..+
T Consensus        65 ~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~-~---~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~  140 (334)
T 2pig_A           65 NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-R---ADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILA  140 (334)
T ss_dssp             TCEEETTCEECTTCEEESSCEEESSCEECTTCEEE-S---CEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC
T ss_pred             CeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEE-e---EEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEee
Confidence            34567788888888888888888888888888885 6   7888888888888886542111111111111111100000


Q ss_pred             CCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeC----CCCeeCCCCEEe
Q 039842          152 RSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLP----PGRRIPTGELWA  227 (284)
Q Consensus       152 ~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~----~~~~I~~~~vv~  227 (284)
                      .  .....      .+..++.|+++++|..+.|+++|.|+++|.|+ +++|++++.|+++++|.    ++..|++++.+.
T Consensus       141 ~--~~~~~------~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~~~~~~~v~I~~~~~I~  211 (334)
T 2pig_A          141 I--QGLTH------EHAQILQIYDRATVNHSRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIEGDKDNNVWICDCAKVY  211 (334)
T ss_dssp             ----------------CCCEEECTTCEEESCEEETTCEECTTCEEE-SEEECTTCEECTTCEEECCSSCCEEECTTCEEC
T ss_pred             c--ceeec------ccCCCeEECCCCEEeccEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEECCceeccEEECCCcEEe
Confidence            0  00000      01222445555555555555555555555554 45555555555555554    345699999999


Q ss_pred             ccCceeeccCCHHHHhhh
Q 039842          228 GNPARFVRTLTHEETLEI  245 (284)
Q Consensus       228 G~pa~~~~~~~~~~~~~~  245 (284)
                      |+ +++.+.+.+++...+
T Consensus       212 g~-a~V~R~~~~~Ei~~i  228 (334)
T 2pig_A          212 GH-ARVIAGTEEDAIPTL  228 (334)
T ss_dssp             TT-CEEECCSSTTCCCEE
T ss_pred             ee-EEEeccCCHHHhhhh
Confidence            98 999998877655443

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.57  E-value=2e-14  Score=136.48  Aligned_cols=146  Identities=13%  Similarity=0.223  Sum_probs=90.5

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCC---cEEECCCCEECCCCEEecCCCCCcccccceeeeecccccC
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN---KITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSC  150 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~---~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~  150 (284)
                      .+++++.|++++.|.+++.|++++.|+++|.|. +..   .+.||++|.|+ ++.|...      .+|.++.+....   
T Consensus       270 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~-~~~~i~~~~ig~~~~i~-~~~i~~~------~Ig~~~~Ig~~~---  338 (468)
T 1hm9_A          270 YIDIDVEIAPEVQIEANVILKGQTKIGAETVLT-NGTYVVDSTIGAGAVIT-NSMIEES------SVADGVTVGPYA---  338 (468)
T ss_dssp             EECTTCEECTTCEECSSCEEESSCEECTTCEEC-TTCEEESCEECTTCEEC-SCEEESC------EECTTCEECSSC---
T ss_pred             EECCCcEECCCCEECCCcEECCCCEECCCCEEC-CCCEEeccEEeCCcEEE-EEEEecc------ccCCCcEECCce---
Confidence            466667777777777777777777777777774 322   12344444444 4433321      122222221111   


Q ss_pred             CCCCccccccCCcceEECCCCEEC-----------------CCceeeccEECCCCEECCCcEEcC-------CCEECCCC
Q 039842          151 PRSNSLYIAWLPAETSIERFVTIG-----------------AYCSLRSCTIEPECIIGQHSILME-------GSMVETHA  206 (284)
Q Consensus       151 ~~~~~~~~~~~~~~v~Ig~~v~Ig-----------------~~~~I~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~  206 (284)
                               ....+++||++|.||                 +.+.+.+++||++|+||+++++..       +++||++|
T Consensus       339 ---------~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~  409 (468)
T 1hm9_A          339 ---------HIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNV  409 (468)
T ss_dssp             ---------EECSSCEECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTC
T ss_pred             ---------EEecCcEECCccEECCCcEEeeeEEcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCe
Confidence                     011123344443333                 333345578899999999998865       79999999


Q ss_pred             EEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842          207 ILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       207 ~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      +||++++|.++..|++++++. ..+.+.+++++.
T Consensus       410 ~Ig~~~~i~~~v~Ig~~~~i~-~~s~v~~~v~~~  442 (468)
T 1hm9_A          410 FVGSNSTIIAPVELGDNSLVG-AGSTITKDVPAD  442 (468)
T ss_dssp             EECTTCEEESSCEECTTCEEC-TTCEECSCBCTT
T ss_pred             EECCCCEEeCCcEECCCCEEC-CCCEECCCCCCC
Confidence            999999999999999999864 457777776654

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.57  E-value=2.1e-14  Score=127.96  Aligned_cols=53  Identities=21%  Similarity=0.258  Sum_probs=49.1

Q ss_pred             cceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCC-------EEcCCCeeC
Q 039842          163 AETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHA-------ILEAGSVLP  215 (284)
Q Consensus       163 ~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~-------~I~a~s~V~  215 (284)
                      .+++||++|+||++|+| .+++||++|+||++++|.++++|++++       .|+++++|.
T Consensus       176 ~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~~~~~~~~~g~Vp~~svvv  236 (276)
T 3gos_A          176 NPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVV  236 (276)
T ss_dssp             CCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEE
T ss_pred             CCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccccccceeccccCCCcEEE
Confidence            46999999999999998 589999999999999999999999998       899999983

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.56  E-value=2.6e-14  Score=135.16  Aligned_cols=151  Identities=15%  Similarity=0.208  Sum_probs=94.1

Q ss_pred             EEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcce
Q 039842           86 VLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAET  165 (284)
Q Consensus        86 ~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v  165 (284)
                      .+.+++.||+++.|++++.|.++   +.||++|.|+++|+|....-.....++.++.+.+.. ...+...+.......++
T Consensus       264 ~~~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~-Ig~~~~ig~~~~i~~~~  339 (459)
T 4fce_A          264 DLRGELTHGRDITIDTNVIIEGH---VILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDAR-LDANCTVGPFARLRPGA  339 (459)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEE---EEECTTCEECTTCEEESCEECTTCEECSSCEEESCE-ECTTCEECSSEEECTTC
T ss_pred             EEeCcEEECCCcEECCCeeeccc---eEECCCCEECCCCEEeccEECCCCEECCCcEEeCCE-ECCCCEECCccEECCCc
Confidence            35667778888888888888655   788888888888777631111112222222221100 00111111111122234


Q ss_pred             EECCCCEECCCcee-----------------eccEECCCCEECCCcEEcC-------CCEECCCCEEcCCCeeCCCCeeC
Q 039842          166 SIERFVTIGAYCSL-----------------RSCTIEPECIIGQHSILME-------GSMVETHAILEAGSVLPPGRRIP  221 (284)
Q Consensus       166 ~Ig~~v~Ig~~~~I-----------------~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~a~s~V~~~~~I~  221 (284)
                      +||+++.||+++.|                 .+++||++|+||+++++..       +++||++|+||++++|.+++.|+
T Consensus       340 ~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig  419 (459)
T 4fce_A          340 ELAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVA  419 (459)
T ss_dssp             EECTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEEC
T ss_pred             EECCCcEECCCeEEeeeEEcCCCEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEEC
Confidence            55555555554443                 2357888888888888765       79999999999999999999999


Q ss_pred             CCCEEeccCceeeccCCHHH
Q 039842          222 TGELWAGNPARFVRTLTHEE  241 (284)
Q Consensus       222 ~~~vv~G~pa~~~~~~~~~~  241 (284)
                      +++++ |..+.+.+++++..
T Consensus       420 ~~~~i-gagsvV~~~v~~~~  438 (459)
T 4fce_A          420 NGATI-GAGTTVTRDVAENE  438 (459)
T ss_dssp             TTCEE-CTTCEECSCBCTTC
T ss_pred             CCCEE-CCCCEEccccCCCC
Confidence            99996 45577777776653

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.55  E-value=9.5e-14  Score=116.71  Aligned_cols=126  Identities=15%  Similarity=0.207  Sum_probs=102.2

Q ss_pred             CCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCc
Q 039842           76 AVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNS  155 (284)
Q Consensus        76 ~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (284)
                      +++++|+|++.|.+++.||+++.|++++.|.++   +.||++|.|+++++|+.                           
T Consensus         1 G~~~~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~---~~IG~~~~Ig~~~~I~~---------------------------   50 (192)
T 3mqg_A            1 GHMATIHPTAIVDEGARIGAHSRIWHWVHICGG---AEIGEGCSLGQNVFVGN---------------------------   50 (192)
T ss_dssp             --CCEECTTCEECTTCEECTTCEECTTCEECTT---CEECTTCEECTTCEECS---------------------------
T ss_pred             CCCCEECCCcEECCCCEECCCCEECCCCEECCC---cEECCCCEECCCEEECC---------------------------
Confidence            467899999999999999999999999999765   99999999999999953                           


Q ss_pred             cccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEc---------------CCCEECCCCEEcCCCeeCCCCe
Q 039842          156 LYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILM---------------EGSMVETHAILEAGSVLPPGRR  219 (284)
Q Consensus       156 ~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~---------------~gv~Ig~~~~I~a~s~V~~~~~  219 (284)
                              +++||++|.|++++.| .+++||++|+||.++.+.               .+++||++|+|+++++|.+++.
T Consensus        51 --------~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~  122 (192)
T 3mqg_A           51 --------RVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGAT  122 (192)
T ss_dssp             --------SCEECSSCEECTTCEECTTEEECTTCEECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCE
T ss_pred             --------ceEECCCcEEcCCcEEeCCCEECCCCEECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCCCE
Confidence                    3889999999999999 678999999999987764               4577888888888888777777


Q ss_pred             eCCCCEEeccCceeeccCCHH
Q 039842          220 IPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       220 I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      |++++++ |..+.+.+++++.
T Consensus       123 Ig~~~~I-gagsvV~~~vp~~  142 (192)
T 3mqg_A          123 IGRYAFV-GAGAVVNKDVPDF  142 (192)
T ss_dssp             ECTTCEE-CTTCEECSCBCTT
T ss_pred             ECCCCEE-cCCCEECcccCCC
Confidence            7777775 3445555555543

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.53  E-value=5.3e-14  Score=127.38  Aligned_cols=119  Identities=21%  Similarity=0.182  Sum_probs=77.3

Q ss_pred             ceeCCCcEEcCCcEEecce-----EECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccc
Q 039842           73 PKVAVDAYVAPNVVLAGQV-----TVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ  147 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v-----~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~  147 (284)
                      ..+.+++.|.+++.|+.++     .|+.++.|++++.|...   ++||++|.||++|.|+........            
T Consensus       146 ~~I~p~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~---~~Ig~~~~IG~~v~I~~~~~I~~~------------  210 (316)
T 3tk8_A          146 FRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTW---ATVGSCAQIGKNVHLSGGVGIGGV------------  210 (316)
T ss_dssp             CEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTT---EEECTTCEECTTCEECTTCEECCC------------
T ss_pred             cEEeCCeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccc---eEECCCCEECCCCEEcCCCEECCC------------
Confidence            3444555555555444444     34445556666655422   555555555555555433220000            


Q ss_pred             ccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCC-------EEcCCCeeC
Q 039842          148 MSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHA-------ILEAGSVLP  215 (284)
Q Consensus       148 ~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~-------~I~a~s~V~  215 (284)
                               .+.....+++||++|+||.+|+| .+++||++|+||++++|.+++.|++.+       .|+++++|.
T Consensus       211 ---------~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~t~I~d~~~~~v~~g~Vp~gsvVv  277 (316)
T 3tk8_A          211 ---------LEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVTYGRIPAGSVVV  277 (316)
T ss_dssp             ---------CSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEE
T ss_pred             ---------cccccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeeecccccccccccEeCCCCEEE
Confidence                     00112246999999999999998 679999999999999999999999888       888888884

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.52  E-value=1.1e-13  Score=118.55  Aligned_cols=119  Identities=11%  Similarity=0.142  Sum_probs=94.9

Q ss_pred             cceEECCCCEECCC-CEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEE
Q 039842           89 GQVTVCDGASVWPG-SVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSI  167 (284)
Q Consensus        89 ~~v~IG~~~~I~~~-~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~I  167 (284)
                      .++.|++++.|.+. +.|.|+...+.||++|.|+++++|....                                .+++|
T Consensus        35 ~~v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~--------------------------------~~~~I   82 (215)
T 2wlg_A           35 NSVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSD--------------------------------CSLQI   82 (215)
T ss_dssp             CEEEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTT--------------------------------CEEEE
T ss_pred             CEEEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCC--------------------------------ceEEE
Confidence            35777888888777 5676654569999999999999886321                                24899


Q ss_pred             CCCCEECCCcee----eccEECCCCEECCCcEEcCC-------------------CEECCCCEEcCCCeeCCCCeeCCCC
Q 039842          168 ERFVTIGAYCSL----RSCTIEPECIIGQHSILMEG-------------------SMVETHAILEAGSVLPPGRRIPTGE  224 (284)
Q Consensus       168 g~~v~Ig~~~~I----~~v~Igd~v~IG~~s~I~~g-------------------v~Ig~~~~I~a~s~V~~~~~I~~~~  224 (284)
                      |++|.|++++.+    ..++||++|.||.++.|...                   ++||++|+|+++++|.+++.|++++
T Consensus        83 G~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~  162 (215)
T 2wlg_A           83 QAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNV  162 (215)
T ss_dssp             CTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSC
T ss_pred             cCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCC
Confidence            999999996666    57999999999999999753                   7999999999999999999999998


Q ss_pred             EEeccCceeeccCCHH
Q 039842          225 LWAGNPARFVRTLTHE  240 (284)
Q Consensus       225 vv~G~pa~~~~~~~~~  240 (284)
                      ++. ..+.+.+++++.
T Consensus       163 vIg-agsvV~~~vp~~  177 (215)
T 2wlg_A          163 VVG-SHTVLYKSFKEP  177 (215)
T ss_dssp             EEC-TTCEECSCCCCC
T ss_pred             EEC-CCCEEcCccCCC
Confidence            864 446666665543

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.52  E-value=1.5e-13  Score=118.12  Aligned_cols=105  Identities=23%  Similarity=0.386  Sum_probs=84.9

Q ss_pred             CEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCEECCC
Q 039842           97 ASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAY  176 (284)
Q Consensus        97 ~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~  176 (284)
                      +.+++.+.+.++   +.||++|.|+++++|..                                   +++||++|.|+.+
T Consensus       100 ~~i~~~a~i~~~---v~IG~g~~I~~~~~i~~-----------------------------------~~~IG~~~~I~~~  141 (220)
T 4ea9_A          100 NAIHPSAVVSPS---VRLGEGVAVMAGVAINA-----------------------------------DSWIGDLAIINTG  141 (220)
T ss_dssp             CEECTTCEECTT---CEECSSCEECTTCEECT-----------------------------------TCEECTTCEECTT
T ss_pred             CcCCCCCEECCC---CEECCCCEEcCCCEECC-----------------------------------CCEECCCCEECCC
Confidence            566666666444   77788888888888853                                   3788888888888


Q ss_pred             ceee-ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842          177 CSLR-SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       177 ~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      ++|. +++||++|+|+.++.|.++++||++|+|+++++|.++..|++++++ |..+.+.+++++.
T Consensus       142 ~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~Ig~~~~i-gagsvv~~~v~~~  205 (220)
T 4ea9_A          142 AVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIV-GAGGVVVRDLPDS  205 (220)
T ss_dssp             CEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEE-CTTCEECSCBCTT
T ss_pred             CEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCCcEECCCCEE-CCCCEEccccCCC
Confidence            8884 6899999999999999999999999999999999999999998885 5667777766554

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.49  E-value=7.8e-14  Score=131.95  Aligned_cols=113  Identities=14%  Similarity=0.283  Sum_probs=83.0

Q ss_pred             ceeCCCcEEcCCcEEe----cceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc
Q 039842           73 PKVAVDAYVAPNVVLA----GQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM  148 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~----~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~  148 (284)
                      ..+++++.|+|++.|.    .++.||++|+|+. +.|. +   ++||++|.|+++|+|+..                   
T Consensus       309 ~~i~~~~~i~~~~~i~~~~I~~~~Ig~~~~I~~-~~i~-~---~~Ig~~~~Ig~~~~I~~~-------------------  364 (451)
T 1yp2_A          309 APIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-H---SVVGLRSCISEGAIIEDS-------------------  364 (451)
T ss_dssp             SCCCCCCCCCCCEEEEEEEEEEEEECTTCEEEE-EEEE-S---CEECTTCEECTTCEEESC-------------------
T ss_pred             CeeccCCccCCCeEEcceEEeCeEECCCCEEcc-eEEe-c---cEECCCCEECCCCEEcCc-------------------
Confidence            3456666666665551    2456666666654 5553 4   889999999999999743                   


Q ss_pred             cCCCCCccccccCCcceEECCC------------------CEECCCceeeccEECCCCEECCCcEEcCC------CEECC
Q 039842          149 SCPRSNSLYIAWLPAETSIERF------------------VTIGAYCSLRSCTIEPECIIGQHSILMEG------SMVET  204 (284)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~Ig~~------------------v~Ig~~~~I~~v~Igd~v~IG~~s~I~~g------v~Ig~  204 (284)
                                      ++++++                  +.||++|.|++++||++|+||++++|..+      .+||+
T Consensus       365 ----------------~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~  428 (451)
T 1yp2_A          365 ----------------LLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETD  428 (451)
T ss_dssp             ----------------EECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECCSSCCSCEEEGGG
T ss_pred             ----------------eEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEECCCCEEeCCcccccCceeCC
Confidence                            344442                  88888999999999999999999999865      37888


Q ss_pred             CCEEcCCC-eeCCCCeeCCCCE
Q 039842          205 HAILEAGS-VLPPGRRIPTGEL  225 (284)
Q Consensus       205 ~~~I~a~s-~V~~~~~I~~~~v  225 (284)
                      +++|++++ +|+++..|+++++
T Consensus       429 ~~~ig~~~v~Ig~~a~i~agsv  450 (451)
T 1yp2_A          429 GYFIKSGIVTVIKDALIPSGII  450 (451)
T ss_dssp             TEEEETTEEEECTTCEECTTCB
T ss_pred             CEEEcCCEEEECCCcEECCCcc
Confidence            88888886 4677777777765

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.49  E-value=1.1e-13  Score=123.55  Aligned_cols=104  Identities=18%  Similarity=0.134  Sum_probs=82.1

Q ss_pred             CCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCC--------cEEECCCCEECCCCEEecCCCCCcccccceee
Q 039842           71 WVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN--------KITVGFCSNVQERCVLHAAWNSPYRFVGFVSL  142 (284)
Q Consensus        71 ~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~--------~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~  142 (284)
                      ....|++.+.|.++++|++++.|+++++|..++.+. +..        .++||++|.|+++++|+......         
T Consensus       160 ~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig-~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~~---------  229 (332)
T 3fsy_A          160 TGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTL-GASMVEGRISAGVVVGDGSDVGGGASIMGTLSGG---------  229 (332)
T ss_dssp             TTCEESCGGGBBTTEEECTTCEECTTCEECTTEEES-SCCEECSEECTTCEECTTCEECTTCEECSBCC-----------
T ss_pred             CCcEECCcCEECCCCEECCCCEEccccEEEECCeEC-cCCEECCceecceEECCCCEECCCCEEcCCCCCC---------
Confidence            345788888888888888888888888877776663 222        16789999999998886542210         


Q ss_pred             eecccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEEC
Q 039842          143 LIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVE  203 (284)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig  203 (284)
                                        ...+++||++|+||+|++| +++|||+|+||++++|..+++|-
T Consensus       230 ------------------~~~~V~IGDnv~IGanAtI-gVtIGd~~iIGAGSVVtkdt~I~  271 (332)
T 3fsy_A          230 ------------------GTHVISIGKRCLLGANSGL-GISLGDDCVVEAGLYVTAGTRVT  271 (332)
T ss_dssp             -------------------CCBCEECTTCEECTTCEE-CSCBCSSCEECTTCEECTTCEEE
T ss_pred             ------------------CccceEECCCCEECCCCEE-eeEECCCCEECCCCEECCCCEEE
Confidence                              1235999999999999999 99999999999999999998874

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.48  E-value=4.3e-13  Score=128.74  Aligned_cols=148  Identities=14%  Similarity=0.125  Sum_probs=101.1

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecC----CC--------cEEECCCCEECCCCEEecCCCC-Ccccccce
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD----LN--------KITVGFCSNVQERCVLHAAWNS-PYRFVGFV  140 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~----~~--------~v~IG~~~~I~~~~~I~~~~~~-~~~~~g~~  140 (284)
                      .+++++.|++++.+.+++.++++|.|++++.+...    ..        ...+|+++.|++++.+..+... ....+|..
T Consensus       285 ~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~  364 (501)
T 3st8_A          285 TIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAF  364 (501)
T ss_dssp             EECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEET
T ss_pred             EECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCe
Confidence            57788888888888888888888888888877511    00        1223444444444444322210 01111211


Q ss_pred             eeeecccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcC-------CCEECCCCEEcCCCe
Q 039842          141 SLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILME-------GSMVETHAILEAGSV  213 (284)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~a~s~  213 (284)
                      ..+                   .+++||+++.|++.+++..++||++|.||+++++..       .++||++|+||.++.
T Consensus       365 v~i-------------------k~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~  425 (501)
T 3st8_A          365 VEV-------------------KNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTM  425 (501)
T ss_dssp             EEE-------------------ESCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCE
T ss_pred             EEE-------------------ccceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCE
Confidence            111                   247888999999999999999999999999998754       589999999999999


Q ss_pred             eCCCCeeCCCCEEeccCceeeccCCHHH
Q 039842          214 LPPGRRIPTGELWAGNPARFVRTLTHEE  241 (284)
Q Consensus       214 V~~~~~I~~~~vv~G~pa~~~~~~~~~~  241 (284)
                      |.++..|+++++++ ..+.+.+++++..
T Consensus       426 l~~~v~Ig~~~~i~-ags~v~~dvp~~~  452 (501)
T 3st8_A          426 FVAPVTIGDGAYTG-AGTVVREDVPPGA  452 (501)
T ss_dssp             EESSEEECTTCEEC-TTCEECSCBCTTC
T ss_pred             EcCCcEECCCCEEC-CCCEECcccCCCC
Confidence            98889999988854 4456666666553

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.48  E-value=5.5e-14  Score=126.87  Aligned_cols=113  Identities=13%  Similarity=0.151  Sum_probs=65.7

Q ss_pred             eeCCCcEEcCCcEE--ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCC
Q 039842           74 KVAVDAYVAPNVVL--AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCP  151 (284)
Q Consensus        74 ~i~~~~~I~~~a~i--~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~  151 (284)
                      .|++++.|++++.|  +.++.||++|.|+++|.|..+   ++||+++.+++++.+..+..                    
T Consensus       165 ~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~---vtIG~~~~ig~~~~i~~~~~--------------------  221 (313)
T 3q1x_A          165 DIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQS---VTLGAMHFQEEGGVIKRGTK--------------------  221 (313)
T ss_dssp             EECTTCEECSSCEESSCTTCEECTTCEECSSCEECTT---CEEECCCCCCTTCCCCCCSS--------------------
T ss_pred             EECCCCEECCCEEECCCCceEECCCcEECCCCEECCC---cEEeCCcEECCCceEcCCCc--------------------
Confidence            35555555555555  345555555555555555322   55555555555555433211                    


Q ss_pred             CCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEE-cCCCeeCCCCeeCC
Q 039842          152 RSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAIL-EAGSVLPPGRRIPT  222 (284)
Q Consensus       152 ~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I-~a~s~V~~~~~I~~  222 (284)
                                 ..++||++|+||++|+| .+++||++|+||++|+|.+++..+..+++ |..+.+.  +.+++
T Consensus       222 -----------~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~dVp~gs~vvi~G~PAkvi--k~~~~  281 (313)
T 3q1x_A          222 -----------RHPTVGDYVTIGTGAKVLGNIIVGSHVRIGANCWIDRDVDSNQTVYISEHPTHFV--KPCTT  281 (313)
T ss_dssp             -----------CSCEECSSCEECTTCEEESSCEECSSEEECTTCEECSCBCSSEEC-----------------
T ss_pred             -----------cCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcCCCCEEEEcCCCcEEE--eeCcc
Confidence                       23699999999999988 46999999999999999998766665555 5666665  44443

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.48  E-value=5.4e-13  Score=116.15  Aligned_cols=106  Identities=18%  Similarity=0.277  Sum_probs=64.6

Q ss_pred             CCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCEE
Q 039842           94 CDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTI  173 (284)
Q Consensus        94 G~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~I  173 (284)
                      +.++.|++++.|.++   +.||++|.|+++++|..                                   +++||++|.|
T Consensus        89 ~~~~~I~~~a~I~~~---v~Ig~~~~I~~~s~I~~-----------------------------------~~~IG~~~~I  130 (240)
T 3r8y_A           89 GIKARIEPGAIIRDH---VEIGDNAVIMMNATINI-----------------------------------GAVIGEGSMI  130 (240)
T ss_dssp             TCSSEECTTCEEBSS---CEECTTCEECTTCEECT-----------------------------------TCEECTTCEE
T ss_pred             CCCCEECCCCEECCC---cEECCCCEECCCCEECC-----------------------------------CCEECCCCEE
Confidence            445666666666544   66677777777776642                                   3667777777


Q ss_pred             CCCceee-ccEECCCCEECCCcEEcCC--------CEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCC
Q 039842          174 GAYCSLR-SCTIEPECIIGQHSILMEG--------SMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLT  238 (284)
Q Consensus       174 g~~~~I~-~v~Igd~v~IG~~s~I~~g--------v~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~  238 (284)
                      +.+|+|. .++||++|.|++++.+...        ++||++|+||.+++|.+++.|++++++ |..+.+.++++
T Consensus       131 ~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I-~~gsvV~~~vp  203 (240)
T 3r8y_A          131 DMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVV-AAGAVVTEDVP  203 (240)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEECTTCEE-CTTCEECSCBC
T ss_pred             CCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEECCCCEE-CCCCEECCCcC
Confidence            7777774 6777777777777766432        666666666666666555556555553 23344444433

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.48  E-value=9.1e-14  Score=128.09  Aligned_cols=103  Identities=16%  Similarity=0.310  Sum_probs=80.9

Q ss_pred             CCcEEcCCcEEecceEECCCCEECCC-CEEecCCCcEE-ECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           77 VDAYVAPNVVLAGQVTVCDGASVWPG-SVLRGDLNKIT-VGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        77 ~~~~I~~~a~i~~~v~IG~~~~I~~~-~~I~g~~~~v~-IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      +++.|+++++|.+++.||+++.|+++ ++|..+   +. ||+ |.|..  .|+                           
T Consensus       216 ~gv~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~n---v~vIG~-~~I~~--~Ig---------------------------  262 (387)
T 2rij_A          216 DNTRILESSKVRMGASLAAGTTIMPGASYVNFN---AGTTGA-CMVEG--RIS---------------------------  262 (387)
T ss_dssp             TTCEESCGGGBBTTCBCCTTCEECSSSCEECTT---CEESSC-CEECS--EEC---------------------------
T ss_pred             CCEEEcCCCEECCCeEEcCCCEEeCCeeEECCC---cEEECC-EEEee--EEC---------------------------
Confidence            37888888888888888888888885 777433   33 677 66653  442                           


Q ss_pred             ccccccCCcceEECCCCEECCCcee----ec-----cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCC
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSL----RS-----CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPT  222 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I----~~-----v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~  222 (284)
                              .+++||++|.|+.++.|    .+     ++|||+|+||++|+  ++++||++|+|+++++|.++..+.+
T Consensus       263 --------~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv--~GV~IGdgavIGAGsVVt~dv~i~~  329 (387)
T 2rij_A          263 --------SSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV--TGIPLGDNCIVDAGIAVLEGTKFLL  329 (387)
T ss_dssp             --------TTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE--ECSCBCTTCEECTTCEECTTCEEEE
T ss_pred             --------CCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc--CCcEECCCCEECCCCEECCCceeee
Confidence                    24889999999999964    33     89999999999998  8999999999999999996655543

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.47  E-value=6.9e-13  Score=111.92  Aligned_cols=74  Identities=15%  Similarity=0.234  Sum_probs=50.2

Q ss_pred             eEECCCCEECCCceee-ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCH
Q 039842          165 TSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTH  239 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~  239 (284)
                      ++||++|.|+.+++|. +++||++|+|+.++.|.++++||++|+|+++++|.++..|++++++ |..+.+.+++++
T Consensus       108 ~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~I-gagsvv~~~v~~  182 (194)
T 3bfp_A          108 AKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSIL-GGGATLVKNQDE  182 (194)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE-CTTCEECSCBCS
T ss_pred             CEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEE-CCCCEEccccCC
Confidence            5666666666666663 6677777777777777777777777777777777777777777664 455555555443

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.45  E-value=2e-13  Score=122.83  Aligned_cols=103  Identities=17%  Similarity=0.089  Sum_probs=76.8

Q ss_pred             CCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCC--------cEEECCCCEECCCCEEecCCCCCcccccceee
Q 039842           71 WVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN--------KITVGFCSNVQERCVLHAAWNSPYRFVGFVSL  142 (284)
Q Consensus        71 ~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~--------~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~  142 (284)
                      ....|++.+.|.+++.|++++.|+++++|..++.|. +..        .++||++|.|+++|+|+......         
T Consensus       183 ~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IG-dg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~~---------  252 (347)
T 3r5d_A          183 AGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTE-GPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGG---------  252 (347)
T ss_dssp             TTEEESSGGGBBTTEEECTTEEECTTCEECTTEEES-SSEEECSEECTTCEECTTEEECTTCEECC--------------
T ss_pred             CCcEECCcCEECCCCEECCCCEECCCCEECCCCEEC-CCcEEcCCceEeEEECCCCEECCCCEEccccCCC---------
Confidence            345677777777777777777777776666666552 321        26788888888888886431100         


Q ss_pred             eecccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEE
Q 039842          143 LIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMV  202 (284)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~I  202 (284)
                                        ...+++||++|+||++++| +++|||+|+||++++|..+++|
T Consensus       253 ------------------~~~~V~IGdnv~IGAnAtI-GVtIGd~~iIGAGSVVtkdt~I  293 (347)
T 3r5d_A          253 ------------------GNIVISVGEGCLIGANAGI-GIPLGDRNIVEAGLYITAGTKV  293 (347)
T ss_dssp             -------------------CCCCEECTTCEECTTCEE-CSCBCTTCEECTTCEECTTCEE
T ss_pred             ------------------CccceEECCCCEECCCCEE-eeEECCCCEECCCCEECCCCEE
Confidence                              1135999999999999999 9999999999999999999887

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.43  E-value=4.6e-13  Score=127.86  Aligned_cols=104  Identities=17%  Similarity=0.208  Sum_probs=83.1

Q ss_pred             ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECC
Q 039842           90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIER  169 (284)
Q Consensus        90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~  169 (284)
                      ...|+++++|++++++.++   +.||++|.|+++|+|.                                    +++||+
T Consensus       273 ~~~I~~~a~I~p~a~i~g~---v~IG~~~~I~~~a~I~------------------------------------~v~IG~  313 (496)
T 3c8v_A          273 GAGSASGASVSGYAVIKGD---TVIGENVLVSQRAYLD------------------------------------NAWMGK  313 (496)
T ss_dssp             ---CCTTCEECTTSEEESS---CEECTTCEECTTCEEE------------------------------------EEEECT
T ss_pred             CcccCCCcEECCCcEEeCC---eEECCCCEECCCcEEe------------------------------------ceEecC
Confidence            5667888888888888755   8899999999999882                                    488999


Q ss_pred             CCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCC----CeeCCCCEEeccCceee
Q 039842          170 FVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPG----RRIPTGELWAGNPARFV  234 (284)
Q Consensus       170 ~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~----~~I~~~~vv~G~pa~~~  234 (284)
                      +|.|+++|+|++++||++|+||.+++|. +++||++|+||++++|.++    +.|++++++ |..+.+.
T Consensus       314 ~~~I~~~~~I~~~vIG~~~~Ig~~a~I~-gv~IGd~v~IG~~a~I~~~~~~~v~IG~~a~I-GagsvV~  380 (496)
T 3c8v_A          314 GSNAQENCYIINSRLERNCVTAHGGKII-NAHLGDMIFTGFNSFLQGSESSPLKIGDGCVV-MPHTIID  380 (496)
T ss_dssp             TCEECTTCEEEEEEEEESCEECTTCEEE-SEEEEETCEECTTCEEECCSSSCEEECTTCEE-CTTCEEE
T ss_pred             CCEECCCceEeceEeCCCCEECCCcEEc-CceECCCcEECCCCEEeCCCCcceEECCCCEE-CCCCEEe
Confidence            9999999999999999999999999885 4888888888888888777    777777765 4444444

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.38  E-value=1.4e-12  Score=110.29  Aligned_cols=99  Identities=13%  Similarity=0.078  Sum_probs=48.3

Q ss_pred             ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842           93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT  172 (284)
Q Consensus        93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~  172 (284)
                      +|+++.|.+...+. -...+.||++|.|+.+|+|....                                 .++||++|.
T Consensus        59 ig~~~~I~~p~~~~-ig~~v~IG~~~~I~~~~~i~~~~---------------------------------~i~IG~~~~  104 (195)
T 3nz2_A           59 LGHKSCVQPPFHCE-FGKTIRIGDHTFINMNVVMLDGA---------------------------------PITIGDHVL  104 (195)
T ss_dssp             ECTTCEECSSEEES-CSTTEEECTTCEECTTEEEECSS---------------------------------CEEECTTCE
T ss_pred             cCCCcEEcCCeEEE-eCCCeEECCCcEECcCCEEecCc---------------------------------eEEECCCCE
Confidence            55555555532221 11227777777777777775321                                 367788888


Q ss_pred             ECCCceeec-cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842          173 IGAYCSLRS-CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL  225 (284)
Q Consensus       173 Ig~~~~I~~-v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v  225 (284)
                      ||++|.|.. ....+......++.+..+++||++|+||++++|.+++.|+++++
T Consensus       105 Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~v  158 (195)
T 3nz2_A          105 IGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIGARSV  158 (195)
T ss_dssp             ECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTTCEECTTCE
T ss_pred             ECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECCCCEECCCCE
Confidence            888777743 22333333333333333333333333333333333333333333

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.36  E-value=2.3e-13  Score=122.63  Aligned_cols=99  Identities=16%  Similarity=0.144  Sum_probs=59.1

Q ss_pred             CCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcc
Q 039842           77 VDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSL  156 (284)
Q Consensus        77 ~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  156 (284)
                      .++.|+|+++|+.++.|+.    +.+++|..+   ++||++|.|+++|+|+...+.... .|.                 
T Consensus       189 ~gv~I~p~a~IG~~v~I~h----g~gvvIG~~---~~IG~~v~I~~gvtIg~~~~~~~~-~g~-----------------  243 (310)
T 3f1x_A          189 TGIDIHPGAQIGHHFTIDH----GTGVVIGAT---SIIGNNVKLYQGVTLGAKSFPLDN-NGN-----------------  243 (310)
T ss_dssp             HSCEECTTCEECSSCEEES----CTTCEECTT---CEECSSCEEETTCEEECC---------------------------
T ss_pred             CCcEECCCCEECCCcEECC----CCCeEECCc---eEEcCCCEECCCCEECCCcccccc-ccc-----------------
Confidence            3445555555444444410    334444222   566777777777777665431100 000                 


Q ss_pred             ccccCCcceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCC
Q 039842          157 YIAWLPAETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       157 ~~~~~~~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv  200 (284)
                      ........++||++|+||++|+|. +++||++|+||++|+|..++
T Consensus       244 ~i~~~~~~~~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~~dV  288 (310)
T 3f1x_A          244 PIKGIPRHPILEDDVIVYSNATILGRVTIGKGATVGGNIWVTENV  288 (310)
T ss_dssp             -----CCSCEECTTCEECTTCEEESSCEECTTCEECSSCEECSCB
T ss_pred             cccCCCCCCEECCCcEEcCCCEECCCcEECCCCEECCCCEECCcc
Confidence            000012346999999999999996 89999999999999998764

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.36  E-value=1.2e-11  Score=112.79  Aligned_cols=47  Identities=13%  Similarity=0.133  Sum_probs=39.2

Q ss_pred             cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccC
Q 039842          182 CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNP  230 (284)
Q Consensus       182 v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~p  230 (284)
                      +.|+++++|+ ++.|.++|+|+.+|+|+ +++|.++..|++++++.+++
T Consensus       152 ~~I~~~a~I~-~s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~~~~  198 (334)
T 2pig_A          152 LQIYDRATVN-HSRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIEGDK  198 (334)
T ss_dssp             EEECTTCEEE-SCEEETTCEECTTCEEE-SEEECTTCEECTTCEEECCS
T ss_pred             eEECCCCEEe-ccEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEECCce
Confidence            6678888886 57788888888888887 88888899999999988775

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.33  E-value=7.5e-12  Score=105.21  Aligned_cols=34  Identities=24%  Similarity=0.160  Sum_probs=17.7

Q ss_pred             ECC-CCEECCCCEEecCCCcEEECCCCEECCCCEEe
Q 039842           93 VCD-GASVWPGSVLRGDLNKITVGFCSNVQERCVLH  127 (284)
Q Consensus        93 IG~-~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~  127 (284)
                      +++ ++.|.+.+.+. -...+.||+++.|+++|+|.
T Consensus        60 ~~~~~~~I~~~~~~~-~g~~v~IG~~~~I~~~~~i~   94 (190)
T 3hjj_A           60 SADGKAQINPDFRCD-YGYNIHVGKSFFANFNCVIL   94 (190)
T ss_dssp             ESSSCCEECSSCEES-SSTTEEECTTCEECTTCEEE
T ss_pred             cCCCCcEECCCEEEE-eCCceEECCceeeCCCeEEE
Confidence            444 44445544442 11236666666666666664

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.31  E-value=6e-12  Score=118.94  Aligned_cols=92  Identities=13%  Similarity=0.261  Sum_probs=72.1

Q ss_pred             cEEcCCcEEec----ceEECCCCEECCCCEEecCCCcEEECCC------------------CEECCCCEEecCCCCCccc
Q 039842           79 AYVAPNVVLAG----QVTVCDGASVWPGSVLRGDLNKITVGFC------------------SNVQERCVLHAAWNSPYRF  136 (284)
Q Consensus        79 ~~I~~~a~i~~----~v~IG~~~~I~~~~~I~g~~~~v~IG~~------------------~~I~~~~~I~~~~~~~~~~  136 (284)
                      +.|++++.|.+    ++.||++|.|++++.|.+.   +.+|++                  +.|+++|.|.         
T Consensus       331 ~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~---------  398 (451)
T 1yp2_A          331 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDS---LLMGADYYETDADRKLLAAKGSVPIGIGKNCHIK---------  398 (451)
T ss_dssp             EEECTTCEEEEEEEESCEECTTCEECTTCEEESC---EECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEE---------
T ss_pred             eEECCCCEEcceEEeccEECCCCEECCCCEEcCc---eEECCCCcccccccccccccCceeEEECCCCEEe---------
Confidence            55555555544    8889999999999999744   777774                  8889988874         


Q ss_pred             ccceeeeecccccCCCCCccccccCCcceEECCCCEECCCceeec-------cEECCCCEECCCcEEcCCCEECCCCEEc
Q 039842          137 VGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRS-------CTIEPECIIGQHSILMEGSMVETHAILE  209 (284)
Q Consensus       137 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~-------v~Igd~v~IG~~s~I~~gv~Ig~~~~I~  209 (284)
                                                 +++||++|+||++|+|.+       .+||++|+||+++     |+||++++|+
T Consensus       399 ---------------------------~~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~-----v~Ig~~a~i~  446 (451)
T 1yp2_A          399 ---------------------------RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI-----VTVIKDALIP  446 (451)
T ss_dssp             ---------------------------SEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTE-----EEECTTCEEC
T ss_pred             ---------------------------ccEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCE-----EEECCCcEEC
Confidence                                       378999999999998854       2677777777776     7899999999


Q ss_pred             CCCee
Q 039842          210 AGSVL  214 (284)
Q Consensus       210 a~s~V  214 (284)
                      ++++|
T Consensus       447 agsvv  451 (451)
T 1yp2_A          447 SGIII  451 (451)
T ss_dssp             TTCBC
T ss_pred             CCccC
Confidence            99876

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.28  E-value=1.5e-11  Score=109.51  Aligned_cols=37  Identities=19%  Similarity=0.217  Sum_probs=33.2

Q ss_pred             ceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCC
Q 039842          164 ETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv  200 (284)
                      .++||++|+||++++|. +++||++|+||++++|..++
T Consensus       216 ~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~kdV  253 (287)
T 3mc4_A          216 HPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKSV  253 (287)
T ss_dssp             SCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCB
T ss_pred             CCEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Confidence            48999999999999985 69999999999999998754

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.27  E-value=7.4e-12  Score=106.07  Aligned_cols=101  Identities=17%  Similarity=0.129  Sum_probs=54.5

Q ss_pred             eeCCCcEE--cCCcEEecceEECCCCEECCC--CEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccccc
Q 039842           74 KVAVDAYV--APNVVLAGQVTVCDGASVWPG--SVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMS  149 (284)
Q Consensus        74 ~i~~~~~I--~~~a~i~~~v~IG~~~~I~~~--~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~  149 (284)
                      .+.+.+.+  +.++.|+.++.|+.+|.|.++  +.| |+.  +.||++|.|...+..........   +           
T Consensus        62 ~i~~~~~~~~g~~~~IG~~~~I~~~~~i~~~~~v~I-G~~--v~Ig~~~~I~~~~~~~~~~~~~~---~-----------  124 (199)
T 3ftt_A           62 SISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITI-GDN--VFIGPNCGFYTATHPLNFHHRNE---G-----------  124 (199)
T ss_dssp             EECSSEEESSSTTEEECSSEEECTTEEEECSSCEEE-CSS--EEECTTCEEECEECCSSHHHHHT---T-----------
T ss_pred             EEeCCEEEEecCCcEECCCeEECCCeEEecCCEEEE-CCC--CEECCCCEEecCCCcCccccccc---c-----------
Confidence            45555555  456666666666666666433  455 333  67777777754331110000000   0           


Q ss_pred             CCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCC
Q 039842          150 CPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       150 ~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv  200 (284)
                               .....+++||++|+||.+|+| .+++||++|+||++|+|..++
T Consensus       125 ---------~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dv  167 (199)
T 3ftt_A          125 ---------FEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDI  167 (199)
T ss_dssp             ---------EEEECCEEECSSEEECTTCEECTTCEECTTCEECTTCEECSCB
T ss_pred             ---------ceecCCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECccc
Confidence                     000124677777777777766 357777777777777776643

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.26  E-value=1.8e-11  Score=112.75  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=75.6

Q ss_pred             ceeCCCcEEcCCcEEecceEECCC-CEECCCCEEecCCCcE--EECCCCEECCCCEEecCCCCCcccccceeeeeccccc
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDG-ASVWPGSVLRGDLNKI--TVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMS  149 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~-~~I~~~~~I~g~~~~v--~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~  149 (284)
                      ..|++++.|.+++.|+.++.|+++ ++|++++.+.|+ ..+  .||.+|.||++|.|+........       +.     
T Consensus       218 v~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~nv~vIG~-~~I~~~Ig~~vvIGdnv~Ig~ga~I~g~-------l~-----  284 (387)
T 2rij_A          218 TRILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGA-CMVEGRISSSAIVGEGSDVGGGASILGV-------LS-----  284 (387)
T ss_dssp             CEESCGGGBBTTCBCCTTCEECSSSCEECTTCEESSC-CEECSEECTTCEECTTCEECTTCEECCB-------CS-----
T ss_pred             EEEcCCCEECCCeEEcCCCEEeCCeeEECCCcEEECC-EEEeeEECCCCEECCCCEECCCceEcce-------ec-----
Confidence            457777777777777777777775 777777762244 222  55666666666666543310000       00     


Q ss_pred             CCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCC
Q 039842          150 CPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETH  205 (284)
Q Consensus       150 ~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~  205 (284)
                               .....+++||++|+||++|+ .+++||++|+||++++|.+++.+.+.
T Consensus       285 ---------g~~~~~VvIGdnv~IGagAv-~GV~IGdgavIGAGsVVt~dv~i~~~  330 (387)
T 2rij_A          285 ---------GTSGNAISVGKACLLGANSV-TGIPLGDNCIVDAGIAVLEGTKFLLK  330 (387)
T ss_dssp             ---------STTCCBCEECTTCEECTTCE-ECSCBCTTCEECTTCEECTTCEEEEC
T ss_pred             ---------CCCccCeEEeCCCEECCCCc-CCcEECCCCEECCCCEECCCceeeec
Confidence                     00113489999999999999 99999999999999999999988765

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.25  E-value=5.1e-11  Score=105.22  Aligned_cols=89  Identities=13%  Similarity=0.158  Sum_probs=61.0

Q ss_pred             CcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccc
Q 039842           78 DAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLY  157 (284)
Q Consensus        78 ~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  157 (284)
                      ++.|+|+++|+.++.|+.+    .+++|..+   ++||++|.|+++|+|+......                        
T Consensus       137 g~~I~p~a~IG~g~~I~~~----~~vvIG~~---~~IG~~v~I~~gvtig~~~~~~------------------------  185 (267)
T 1ssq_A          137 DVDIHPAAKIGHGIMFDHA----TGIVVGET---SVIENDVSILQGVTLGGTGKES------------------------  185 (267)
T ss_dssp             SCEECTTCEECSSCEESSC----TTCEECTT---CEECTTCEECTTCEEECCSSSC------------------------
T ss_pred             ceEeCCCCEECCCEEECCC----CceEECCe---eEECCCCEEcCCcEECCCcccC------------------------
Confidence            4566666555444444431    24555322   6677888888888886542210                        


Q ss_pred             cccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCC
Q 039842          158 IAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       158 ~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv  200 (284)
                         ....++||++|+||++++| .+++||++|+||++|+|.+++
T Consensus       186 ---~~~~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~~dV  226 (267)
T 1ssq_A          186 ---GDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPV  226 (267)
T ss_dssp             ---SSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCB
T ss_pred             ---CCCCeEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccCC
Confidence               1124799999999999998 579999999999999998764

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.25  E-value=5.1e-11  Score=101.28  Aligned_cols=34  Identities=18%  Similarity=0.038  Sum_probs=17.3

Q ss_pred             ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEe
Q 039842           93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLH  127 (284)
Q Consensus        93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~  127 (284)
                      +|+++.|.+...+. -...+.||++|.|+.+|+|.
T Consensus        58 ig~~~~I~~~~~~~-~g~~i~IG~~~~I~~~~~i~   91 (203)
T 1krr_A           58 VGENAWVEPPVYFS-YGSNIHIGRNFYANFNLTIV   91 (203)
T ss_dssp             CCSSCEECSCEEES-CSTTEEECSSCEECSCEEEE
T ss_pred             cCCCcEEcCCeEEE-eCCCeEECCeeEECCccEEe
Confidence            44444454444331 12236666666666666664

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.24  E-value=5.9e-13  Score=114.61  Aligned_cols=37  Identities=19%  Similarity=0.271  Sum_probs=23.1

Q ss_pred             cceEECCCCEECCCceee-ccEECCCCEECCCcEEcCC
Q 039842          163 AETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEG  199 (284)
Q Consensus       163 ~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~g  199 (284)
                      ++++||++|+||.+|+|. +++||++|+||++|+|..+
T Consensus       118 g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~d  155 (220)
T 4hur_A          118 GDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN  155 (220)
T ss_dssp             CCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             CCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEccc
Confidence            456666666666666663 4666666666666666554

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.22  E-value=1.8e-11  Score=104.66  Aligned_cols=92  Identities=14%  Similarity=-0.012  Sum_probs=56.4

Q ss_pred             ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEE
Q 039842           88 AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSI  167 (284)
Q Consensus        88 ~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~I  167 (284)
                      .++++||++|.|+++++|.........++++.+.+.+.++....        ..       ..      ......++++|
T Consensus        56 ~~~v~IG~~~~I~~~v~i~~~~~~~h~~~~v~~~~~~~~~~~~~--------~~-------~~------~~~~~~g~v~I  114 (212)
T 3eev_A           56 VDKLVIGSFCSIGSGAVFMMAGNQGHRSDWISTFPFFYQDNDNF--------AD-------AR------DGFTRSGDTII  114 (212)
T ss_dssp             SCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGSCCGGG--------TT-------CC------CCCCCCCCEEE
T ss_pred             cCCcEECCCCEECCCCEEEeCCCCcccccceeeccceeeccccc--------cc-------cc------CCcccCCCeEE
Confidence            36788888888888887753321112333333333332211100        00       00      00112356999


Q ss_pred             CCCCEECCCceee-ccEECCCCEECCCcEEcCCC
Q 039842          168 ERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       168 g~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv  200 (284)
                      |++|+||.+|+|. +++||++|+||++|+|..++
T Consensus       115 G~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~dV  148 (212)
T 3eev_A          115 GHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKDV  148 (212)
T ss_dssp             CSSCEECTTCEECTTCEECTTCEECTTCEECSCB
T ss_pred             CCCCEECCCCEEcCCCEECCCCEECCCCEEcccc
Confidence            9999999999985 79999999999999998664

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.22  E-value=9.7e-11  Score=104.39  Aligned_cols=89  Identities=15%  Similarity=0.161  Sum_probs=60.6

Q ss_pred             CcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccc
Q 039842           78 DAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLY  157 (284)
Q Consensus        78 ~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  157 (284)
                      ++.|+|+++|+.++.|+.+    .+++|..+   ++||++|.|+.+|+|+......                        
T Consensus       157 g~~I~p~a~IG~gv~I~~g----~gvvIG~~---~~IG~~v~I~~gvtLg~~~~~~------------------------  205 (289)
T 1t3d_A          157 QVDIHPAAKIGRGIMLDHA----TGIVVGET---AVIENDVSILQSVTLGGTGKSG------------------------  205 (289)
T ss_dssp             SCEECTTCEECSSCEECSC----TTCEECTT---CEECSSCEECTTCEEECCSSSC------------------------
T ss_pred             ceEEcCCCEEcCCEEECCC----CceEECCC---cEECCCCEEcCCcEECCCcccc------------------------
Confidence            4566666655555555432    24455222   6677777777777776532210                        


Q ss_pred             cccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCC
Q 039842          158 IAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       158 ~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv  200 (284)
                         ...+++||++|+||++++| .+++||++|+||++++|.+++
T Consensus       206 ---~~~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~dV  246 (289)
T 1t3d_A          206 ---GDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPV  246 (289)
T ss_dssp             ---SSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCB
T ss_pred             ---CCCCeEECCCeEECCCCEEecCcEECCCCEECCCCEEccCC
Confidence               0124799999999999988 469999999999999998875

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.21  E-value=7.6e-11  Score=98.91  Aligned_cols=16  Identities=25%  Similarity=0.306  Sum_probs=9.2

Q ss_pred             EEECCCCEECCCCEEe
Q 039842          112 ITVGFCSNVQERCVLH  127 (284)
Q Consensus       112 v~IG~~~~I~~~~~I~  127 (284)
                      +.||+++.|+.+|+|.
T Consensus        77 ~~IG~~~~i~~~~~i~   92 (188)
T 3srt_A           77 IHVGENFFANYDCIFL   92 (188)
T ss_dssp             EEECTTEEECTTEEEE
T ss_pred             eEECCcccccCceEEe
Confidence            5555555555555554

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.13  E-value=9.6e-11  Score=109.78  Aligned_cols=56  Identities=16%  Similarity=0.336  Sum_probs=49.2

Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP  221 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~  221 (284)
                      ++||++|.||.+|.|++++||++|+||.+|.|.+ ++||++|+|+++++|......|
T Consensus       341 ~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~~i~~~~~i~~~~~~~  396 (420)
T 3brk_X          341 SLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSN-VVIDHGVVIPEGLIVGEDPELD  396 (420)
T ss_dssp             CEECTTCEECTTCEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEESSCHHHH
T ss_pred             cEEcCCCEECCCCEEcceEEcCCCEECCCCEEec-eEECCCCEECCCCEEeCCCCCC
Confidence            7899999999999999999999999999999975 9999999999999998655544

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.13  E-value=3.3e-10  Score=94.61  Aligned_cols=43  Identities=16%  Similarity=0.309  Sum_probs=26.7

Q ss_pred             ceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          164 ETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                      +++||++|+||.+|+| .+++||++|+||++|+|..+  |.+++++
T Consensus       128 ~v~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV~~d--ip~~~vv  171 (182)
T 1ocx_A          128 PVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVV  171 (182)
T ss_dssp             CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEE
T ss_pred             CeEEeCCeEECCCCEECCCcEECCCCEECCCCEECCc--CCCCcEE
Confidence            4667777777777766 35666666666666666654  3444433

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.11  E-value=4.1e-10  Score=96.79  Aligned_cols=38  Identities=18%  Similarity=0.255  Sum_probs=33.6

Q ss_pred             cceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCC
Q 039842          163 AETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       163 ~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv  200 (284)
                      ++++||++|+||.+++|. +++||++|+||++++|..++
T Consensus       117 g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~dv  155 (219)
T 4e8l_A          117 GDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNV  155 (219)
T ss_dssp             CCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCB
T ss_pred             CCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEcccC
Confidence            569999999999999985 69999999999999998754

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.09  E-value=5.3e-10  Score=104.71  Aligned_cols=85  Identities=16%  Similarity=0.166  Sum_probs=68.9

Q ss_pred             eCCCcEEcCCcEEec----------ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeee
Q 039842           75 VAVDAYVAPNVVLAG----------QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLI  144 (284)
Q Consensus        75 i~~~~~I~~~a~i~~----------~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~  144 (284)
                      +...+.++|++.++.          ++.||++|+| +++.|. +   ++||++|.|+++|.|.                 
T Consensus       299 i~~~~~i~~~~~i~~~~~~~~~~i~~~~ig~~~~I-~~~~i~-~---~~ig~~~~I~~~~~i~-----------------  356 (420)
T 3brk_X          299 IWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCII-SGAALN-R---SLLFTGVRANSYSRLE-----------------  356 (420)
T ss_dssp             CCCCCCCCCCCEEECBCSSCBCEEESCEECSSCEE-ESCEEE-S---CEECTTCEECTTCEEE-----------------
T ss_pred             eeeccccCCCcEEecccccCCcEecCCEECCCCEE-cCCEEe-C---cEEcCCCEECCCCEEc-----------------
Confidence            444555666666655          7888888888 788874 4   8899999999999984                 


Q ss_pred             cccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCC
Q 039842          145 DLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGS  200 (284)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv  200 (284)
                                         +++||++|.||++|+|.+++||++|.||++++|..+.
T Consensus       357 -------------------~~~i~~~~~i~~~~~i~~~~ig~~~~i~~~~~i~~~~  393 (420)
T 3brk_X          357 -------------------NAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIVGEDP  393 (420)
T ss_dssp             -------------------EEEECTTCEECTTCEEEEEEECTTCEECTTCEESSCH
T ss_pred             -------------------ceEEcCCCEECCCCEEeceEECCCCEECCCCEEeCCC
Confidence                               4899999999999999999999999999999887543

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.08  E-value=8.4e-10  Score=92.35  Aligned_cols=46  Identities=20%  Similarity=0.313  Sum_probs=35.8

Q ss_pred             ceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCCEECCCCEEcCC
Q 039842          164 ETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSMVETHAILEAG  211 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~  211 (284)
                      +++||++|+||.+|+|. +++||++|+||++|+|.++  |.++++++.+
T Consensus       130 ~v~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~~~--vp~~~vv~G~  176 (185)
T 2p2o_A          130 PVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKD--VPANAVVGGN  176 (185)
T ss_dssp             CEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEET
T ss_pred             CeEEcCCeEECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEcc
Confidence            58888888888888885 7888888888888888776  5566665544

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.85  E-value=8.7e-09  Score=88.01  Aligned_cols=44  Identities=27%  Similarity=0.345  Sum_probs=36.5

Q ss_pred             cceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          163 AETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       163 ~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                      ++++||++|+||.+|+|. +++||++|+||++|+|..+  |.+++++
T Consensus       109 ~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~--vp~~~~~  153 (212)
T 1xat_A          109 GDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD--VEPYAIV  153 (212)
T ss_dssp             CCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEE
T ss_pred             CCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--CCCCcEE
Confidence            469999999999999996 7999999999999999875  3444443

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.77  E-value=3.9e-09  Score=90.00  Aligned_cols=39  Identities=21%  Similarity=0.291  Sum_probs=29.3

Q ss_pred             CCcceEECCCCEECCCceee-ccEECCCCEECCCcEEcCC
Q 039842          161 LPAETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEG  199 (284)
Q Consensus       161 ~~~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~g  199 (284)
                      ..++++||++|+||.+++|. +++||++++||++++|..+
T Consensus       110 ~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~  149 (209)
T 1mr7_A          110 IKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKD  149 (209)
T ss_dssp             CCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             ccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence            34568888888888888774 5778888888888777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	284
d1v3wa_	173	b.81.1.5 (A:) Ferripyochelin binding protein {Arch	6e-18
d1qrea_	210	b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M	3e-17
d1xhda_	172	b.81.1.5 (A:) Putative acetyltransferase/acyltrans	6e-17
d1xata_	208	b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudo	6e-09
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	5e-08
d1ocxa_	182	b.81.1.3 (A:) Maltose O-acetyltransferase {Escheri	1e-06
d1mr7a_	203	b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero	1e-06
d1krra_	200	b.81.1.3 (A:) Galactoside acetyltransferase {Esche	2e-06
d1ssqa_	241	b.81.1.6 (A:) Serine acetyltransferase {Haemophilu	7e-06
d3bswa1	193	b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylo	8e-05
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	0.003
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	0.003

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 77.3 bits (189), Expect = 6e-18
 Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 31/195 (15%)

Query: 65  IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERC 124
           I  +    P++   A+V  N V+ G V + +  SVWP +VLRGD+ +I VG  SNVQ+  
Sbjct: 3   IYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNV 62

Query: 125 VLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTI 184
            +H +   P                                    +VTIG    +    +
Sbjct: 63  SIHTSHGYPTEI-------------------------------GEYVTIGHNAMVHGAKV 91

Query: 185 EPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLE 244
               IIG  S++++G+ +  H I+ AG+V+PP + IP   L  G P + VR LT EE   
Sbjct: 92  GNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEW 151

Query: 245 IPKLAVAINDLSKSH 259
             K A    +L++ H
Sbjct: 152 TKKNAEIYVELAEKH 166

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

 Score = 76.2 bits (186), Expect = 3e-17
 Identities = 38/189 (20%), Positives = 67/189 (35%), Gaps = 9/189 (4%)

Query: 73  PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN-KITVGFCSNVQERCVLHAAWN 131
           P +   AY+ P   + G+VT+     V P + +R D    I VG  SNVQ+  VLHA   
Sbjct: 23  PVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALET 82

Query: 132 SPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIG 191
                      ++++              L  ++ +     +G    +       +  +G
Sbjct: 83  INEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVG 142

Query: 192 QHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGN-PARFVRTLTHEETLEIPKLAV 250
            + +L   S          G  +P GR IP G +      A  +  +T +        AV
Sbjct: 143 NNCVLEPRSAA-------IGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTNEAV 195

Query: 251 AINDLSKSH 259
              ++  + 
Sbjct: 196 VYVNVHLAE 204

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} Length = 172

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

 Score = 74.6 bits (182), Expect = 6e-17
 Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 31/195 (15%)

Query: 65  IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERC 124
           I P  +  PK+A  A++A  V + G V V + +S+W  +V+RGD++   +G   NVQ++C
Sbjct: 5   IYPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQC 64

Query: 125 VLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTI 184
            LH +   P                                 +E  VT+G    L SC I
Sbjct: 65  TLHQSPQYP-------------------------------LILEDDVTVGHQVILHSCHI 93

Query: 185 EPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLE 244
           + + +IG  SI+++G+ +   A + AGS++  G++IP   L  G PA+ +R LT E+  +
Sbjct: 94  KKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTAEDRKD 153

Query: 245 IPKLAVAINDLSKSH 259
           + ++     +  + +
Sbjct: 154 MERIRTQYVEKGQYY 168

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} Length = 208

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 52.8 bits (126), Expect = 6e-09
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 20/173 (11%)

Query: 106 RGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAET 165
           R D++K+ +G   ++        A N       + S      M                 
Sbjct: 49  RDDVDKLVIGSFCSIGSGAAFIMAGN-QGHRAEWASTFPFHFMHE---------EPAFAG 98

Query: 166 SIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL 225
           ++  +   G         I  E  IG  ++ M G  V   AI+ + +++     +    +
Sbjct: 99  AVNGYQPAG------DTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVT--GDVEPYAI 150

Query: 226 WAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKK 278
             GNPAR +R    +  ++   L +A  D   +     +P      ++    +
Sbjct: 151 VGGNPARTIRKRFSDGDIQ-NLLEMAWWDWPLADIEAAMPL-LCTGDIPALYQ 201

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 49.7 bits (117), Expect = 5e-08
 Identities = 22/181 (12%), Positives = 54/181 (29%), Gaps = 21/181 (11%)

Query: 74  KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVL------- 126
           ++A +  +  NV L GQ  +     +  G+ +            +++ E   +       
Sbjct: 16  EIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVIVG 75

Query: 127 ----HAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR-- 180
                   +S    V   + +     S   +             +   V  GA       
Sbjct: 76  PYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNY 135

Query: 181 ------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV 234
                    I     +G +S ++    +  ++++ AGS +   + +P   +  G   +  
Sbjct: 136 DGKNKYKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTIT--KDVPADAIAIGRGRQIN 193

Query: 235 R 235
           +
Sbjct: 194 K 194

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} Length = 182

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 182 CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL 237
            TI     IG  +++  G  +  + ++ +G+V+   + +P   +  GNPAR ++ L
Sbjct: 129 VTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVT--KDVPDNVVVGGNPARIIKKL 182

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 28/187 (14%), Positives = 62/187 (33%), Gaps = 10/187 (5%)

Query: 79  AYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVG 138
            ++ P +     V V + +     +    D   +       + ++  +       +  +G
Sbjct: 18  QFIKPILEKLENVEVGEYSYYDSKNGETFDKQIL--YHYPILNDKLKIGK-----FCSIG 70

Query: 139 FVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILME 198
               +I    +     S Y   L      +    +          I  +  IG+  ++M 
Sbjct: 71  PGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMP 130

Query: 199 GSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKS 258
           G  +   AI+ A SV+   + I    L  GNPA  ++    ++T+    L +   +    
Sbjct: 131 GVKIGDGAIVAANSVVV--KDIAPYMLAGGNPANEIKQRFDQDTINQ-LLDIKWWNWPID 187

Query: 259 HFSEFLP 265
             +E + 
Sbjct: 188 IINENID 194

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} Length = 200

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 17/150 (11%)

Query: 92  TVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCP 151
           TV + A V P        N I +G          +   +      +G   L+        
Sbjct: 56  TVGENAWVEPPVYFSYGSN-IHIGRNFYANFNLTIVDDYT---VTIGDNVLIAPNVTLSV 111

Query: 152 RSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAG 211
             + ++             +TIG    + S  +    +            +  ++++ AG
Sbjct: 112 TGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGV-----------TIGDNSVIGAG 160

Query: 212 SVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
           S++   + IP   + AG P R +R +   +
Sbjct: 161 SIVT--KDIPPNVVAAGVPCRVIREINDRD 188

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} Length = 241

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

 Score = 44.0 bits (103), Expect = 7e-06
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 180 RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV 234
           R   +    +IG  + ++    V  +A + A SV+     +P     AG PAR V
Sbjct: 188 RHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVV--LNPVPEYATAAGVPARIV 240

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} Length = 193

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

 Score = 40.3 bits (93), Expect = 8e-05
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 176 YCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV 234
                +  I   C +G +S ++    +   +IL  G+ L   +      ++ G PA+ +
Sbjct: 137 AKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATL--VKNQDEKGVFVGVPAKRM 193

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 19/139 (13%), Positives = 48/139 (34%), Gaps = 12/139 (8%)

Query: 78  DAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHA-AWNSPYRF 136
            A+V P  ++    ++   A + P  ++      + +G      E  VL +    + +  
Sbjct: 5   SAFVHPTAIVEEGASIGANAHIGPFCIVGPH---VEIG------EGTVLKSHVVVNGHTK 55

Query: 137 VGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECI--IGQHS 194
           +G  + +         +  L  A  P    I     I    ++   T++   +  +G  +
Sbjct: 56  IGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDN 115

Query: 195 ILMEGSMVETHAILEAGSV 213
           +LM  + +     +    +
Sbjct: 116 LLMINAHIAHDCTVGNRCI 134

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 33.6 bits (77), Expect = 0.003
 Identities = 8/50 (16%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 159 AWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAIL 208
             +    ++   V IG  C +++  I  +C I  ++++ E + +     +
Sbjct: 27  VIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVV-EDANLAAACTI 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	284
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.97
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.96
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.93
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.92
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.91
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.91
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.87
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.85
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.84
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.84
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.83
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.75
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.75
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.71
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.68
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.66
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.61
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.59
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.53
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.5
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.49
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.45
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.44
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.44
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.41
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.38
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.26
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.26
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.23
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.2
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.17
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.1
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	99.03
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.8

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.97  E-value=2.7e-29  Score=207.20  Aligned_cols=166  Identities=31%  Similarity=0.555  Sum_probs=150.9

Q ss_pred             ceeeecCCCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceee
Q 039842           63 RQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSL  142 (284)
Q Consensus        63 ~~~~~~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~  142 (284)
                      .+++++....+.|+++++|+|+++|.+++.||++|.|+++|+|.++...+.||+++.+++++.++.+..           
T Consensus         3 a~i~~~~~~~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~-----------   71 (172)
T d1xhda_           3 AMIYPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQ-----------   71 (172)
T ss_dssp             CEEECBTTBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTT-----------
T ss_pred             cEEEecCCcCCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCc-----------
Confidence            345566777789999999999999999999999999999999986666789999999999999986533           


Q ss_pred             eecccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCC
Q 039842          143 LIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPT  222 (284)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~  222 (284)
                                          .+++||+++.++.++.+++++|+++|+||.+++|.++++||++|+|+++|+|.++++||+
T Consensus        72 --------------------~~~~ig~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~  131 (172)
T d1xhda_          72 --------------------YPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPP  131 (172)
T ss_dssp             --------------------CCEEECTTCEECTTCEEESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             --------------------CCeeeeeeeeeeeeecccccccccceEEecccEeeCCcEEcCcccccceEEEeeCeEECC
Confidence                                358999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeccCceeeccCCHHHHhhhhhhHHHHHHHHHHH
Q 039842          223 GELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSH  259 (284)
Q Consensus       223 ~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (284)
                      +++++|+||+++++++.++..++.+..+.|.++.+.|
T Consensus       132 ~~v~~G~Pak~i~~~~~~~~~~~~~~~~~y~~~~k~y  168 (172)
T d1xhda_         132 NTLAFGRPAKVIRELTAEDRKDMERIRTQYVEKGQYY  168 (172)
T ss_dssp             TEEEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEecCcEEECCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888888777776654

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=1.6e-28  Score=202.68  Aligned_cols=169  Identities=34%  Similarity=0.553  Sum_probs=153.9

Q ss_pred             eeecCCCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeee
Q 039842           65 IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLI  144 (284)
Q Consensus        65 ~~~~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~  144 (284)
                      ++.+.+..|.|+++++|+|+++|.++++||++|.|+++++|.++...+.||+++.++..+.++....             
T Consensus         3 ~y~~~g~~~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~-------------   69 (173)
T d1v3wa_           3 IYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHG-------------   69 (173)
T ss_dssp             EECBTTBCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTT-------------
T ss_pred             cEECCCCCCEECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccC-------------
Confidence            4566778889999999999999999999999999999999986656799999999999999976533             


Q ss_pred             cccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCC
Q 039842          145 DLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGE  224 (284)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~  224 (284)
                                        ..+.++.++.+......+.+.||++|+||.+|+|.++++||++|+|+++++|.++++||+++
T Consensus        70 ------------------~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~  131 (173)
T d1v3wa_          70 ------------------YPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYS  131 (173)
T ss_dssp             ------------------BCEEECSSCEECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTE
T ss_pred             ------------------CCcccCcceeeeeeeeeeeeecCCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCC
Confidence                              24788999999998899999999999999999999999999999999999999999999999


Q ss_pred             EEeccCceeeccCCHHHHhhhhhhHHHHHHHHHHHHhccc
Q 039842          225 LWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFL  264 (284)
Q Consensus       225 vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (284)
                      +++|+||++++++.+++.+++++..+.|.++.+.|.+..+
T Consensus       132 iv~G~Pak~i~~~~~~~~~~~~~~~~~y~~~~~~~~k~~k  171 (173)
T d1v3wa_         132 LVLGVPGKVVRQLTEEEIEWTKKNAEIYVELAEKHIKGRK  171 (173)
T ss_dssp             EEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             EEcCCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999988866554

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.93  E-value=9.2e-25  Score=191.62  Aligned_cols=70  Identities=20%  Similarity=0.301  Sum_probs=59.0

Q ss_pred             eEECCCCEECCCcee-------eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeecc
Q 039842          165 TSIERFVTIGAYCSL-------RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRT  236 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I-------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~  236 (284)
                      +.|+++|.||++|.+       +.++|||+|+||.++.|.++++||++++|+++|+|.  ++||++++++|+||++...
T Consensus       121 ~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~IG~~a~igagS~Vt--kdvp~~~~~~G~PA~~~~~  197 (262)
T d2jf2a1         121 AHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVA--QDVPPYVIAQGNHATPFGV  197 (262)
T ss_dssp             CEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEEC--SBBCTTEEEEEBTEEEEEE
T ss_pred             cccccccccCCCeeecCccccccceeeCceEEeccCceeccccEeehhceeeccceEe--ecCCcccccCCCCceeeee
Confidence            444444445554444       348999999999999999999999999999999999  9999999999999998754

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.92  E-value=1.2e-24  Score=184.77  Aligned_cols=169  Identities=24%  Similarity=0.283  Sum_probs=129.8

Q ss_pred             CCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCC-CcEEECCCCEECCCCEEecCCCCCcc-cccceeeeeccc
Q 039842           70 QWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDL-NKITVGFCSNVQERCVLHAAWNSPYR-FVGFVSLLIDLQ  147 (284)
Q Consensus        70 ~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~-~~v~IG~~~~I~~~~~I~~~~~~~~~-~~g~~~~~~~~~  147 (284)
                      ...|.|+++++|+|+|.|.++++||++|+|+++|+|+++. ..++||++|.|+++|+|+........ .........   
T Consensus        20 ~~~p~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~---   96 (210)
T d1qrea_          20 PSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVE---   96 (210)
T ss_dssp             CCCCEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEE---
T ss_pred             CCCCccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCcccc---
Confidence            4457899999999999999999999999999999998764 37999999999999999865442111 000000000   


Q ss_pred             ccCCCCCccccccCCcceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCCEECCCCEEcCC-----CeeCCCCeeC
Q 039842          148 MSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSMVETHAILEAG-----SVLPPGRRIP  221 (284)
Q Consensus       148 ~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~-----s~V~~~~~I~  221 (284)
                                ......+++||++|+||+++.|+ +++|||+|+||++++|.+ ++||++|+|+++     ++|++++.||
T Consensus        97 ----------~~~~~~~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~-~~IG~~~vIg~~svv~g~~i~~g~~I~  165 (210)
T d1qrea_          97 ----------VDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIP  165 (210)
T ss_dssp             ----------ETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEESCEECTTBEEC
T ss_pred             ----------ccccccceeeccccccccccccccCCcccCCcEeeCCccccc-cccccCcEEecCcEecCcEeCCCcEEC
Confidence                      00122458999999999999996 699999999999999975 578999988765     4556789999


Q ss_pred             CCCEEecc-CceeeccCCHHHHhhhhhhHHHH
Q 039842          222 TGELWAGN-PARFVRTLTHEETLEIPKLAVAI  252 (284)
Q Consensus       222 ~~~vv~G~-pa~~~~~~~~~~~~~~~~~~~~~  252 (284)
                      +++++.|+ |++.++++.+++..........|
T Consensus       166 ~g~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~  197 (210)
T d1qrea_         166 AGMVVTSQAEADKLPEVTDDYAYSHTNEAVVY  197 (210)
T ss_dssp             TTCEECSHHHHHTCCBCCTTSTTTTHHHHHHH
T ss_pred             CCcEEeCCCcccccccCCHHHHHHHHHHHHHH
Confidence            99999995 99998888876655544433333

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.3e-24  Score=180.69  Aligned_cols=136  Identities=18%  Similarity=0.253  Sum_probs=114.5

Q ss_pred             CCCceeCCCcEEcCCcEE--ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccc
Q 039842           70 QWVPKVAVDAYVAPNVVL--AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ  147 (284)
Q Consensus        70 ~~~~~i~~~~~I~~~a~i--~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~  147 (284)
                      ..++.++++++|+|++.+  +.+++||++++|+++|+|. +.+.++||++|.|+++|+|++..+.               
T Consensus        52 ~l~~~iG~~~~I~p~~~i~~G~nv~IG~~~~I~~~~~I~-~~~~i~IG~~v~Ig~~v~I~~~~~~---------------  115 (200)
T d1krra_          52 EMFATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIV-DDYTVTIGDNVLIAPNVTLSVTGHP---------------  115 (200)
T ss_dssp             HHSSBCCSSCEECSCEEESCSTTEEECSSCEECSCEEEE-CSSCEEECSSCEECSSCEEESEECC---------------
T ss_pred             HHcCcCCCCCEEcCCEEEecCCccEECCccEECceEEEe-cCCCcEeCCCccccceeEEeccccc---------------
Confidence            345689999999999997  6799999999999999996 6677999999999999999865431               


Q ss_pred             ccCCCCCccccccCCcceEECCCCEECCCc-eeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842          148 MSCPRSNSLYIAWLPAETSIERFVTIGAYC-SLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW  226 (284)
Q Consensus       148 ~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~-~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv  226 (284)
                                          .+......+. .-.+++|||+||||.+|+|.+|++||++|+|+++++|.  ++||+++++
T Consensus       116 --------------------~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~--kdvp~~~iv  173 (200)
T d1krra_         116 --------------------VHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVT--KDIPPNVVA  173 (200)
T ss_dssp             --------------------SSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC--SCBCTTEEE
T ss_pred             --------------------ceecccccceeecceEEEccCcccceeeecccccccCCCcEEeCCCEEe--eEcCCCcEE
Confidence                                1111112222 22568999999999999999999999999999999999  899999999


Q ss_pred             eccCceeeccCCHHHHh
Q 039842          227 AGNPARFVRTLTHEETL  243 (284)
Q Consensus       227 ~G~pa~~~~~~~~~~~~  243 (284)
                      +|+||++++++.+++..
T Consensus       174 ~G~PArvik~~~~~~~~  190 (200)
T d1krra_         174 AGVPCRVIREINDRDKH  190 (200)
T ss_dssp             ETTTTEEEEECCGGGTT
T ss_pred             EEeCCEEEEeCCHHHHh
Confidence            99999999998876543

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.91  E-value=5.7e-23  Score=179.73  Aligned_cols=158  Identities=18%  Similarity=0.161  Sum_probs=96.8

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcc-------cccceeeeec
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYR-------FVGFVSLLID  145 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~-------~~g~~~~~~~  145 (284)
                      +.|++++.|+|+|+|++++.||++|.|+++++|.++   +.||++|.|.++++|+........       ..|....+.+
T Consensus        13 a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~---t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig~~~~i~~   89 (259)
T d1j2za_          13 AEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGH---TFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIRE   89 (259)
T ss_dssp             SEECTTCEECTTCEECTTCEECTTCEECTTCEECSE---EEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECT
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCEEEeCC---CEEeeecccCCccEECCCCcccccccccceEEecccccccc
Confidence            345566666666666666666666666666666544   778888888888888655432111       1111111111


Q ss_pred             ccccCCCC-------CccccccCCcceEECCCCEECCCcee-------eccEECCCCEECCCcEEcCCCEECCCCEEcCC
Q 039842          146 LQMSCPRS-------NSLYIAWLPAETSIERFVTIGAYCSL-------RSCTIEPECIIGQHSILMEGSMVETHAILEAG  211 (284)
Q Consensus       146 ~~~~~~~~-------~~~~~~~~~~~v~Ig~~v~Ig~~~~I-------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~  211 (284)
                      ........       ..+....+...+.+++++.||.++.+       .+++|||+||||.++.|.++++||++|+|+++
T Consensus        90 ~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~IG~~a~Igag  169 (259)
T d1j2za_          90 FCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGK  169 (259)
T ss_dssp             TCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTT
T ss_pred             ccccccccccccccccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecccEeccceeeeee
Confidence            11000000       00000001111222222233333222       35899999999999999999999999999999


Q ss_pred             CeeCCCCeeCCCCEEeccCceeec
Q 039842          212 SVLPPGRRIPTGELWAGNPARFVR  235 (284)
Q Consensus       212 s~V~~~~~I~~~~vv~G~pa~~~~  235 (284)
                      ++|.  ++||+++++.|+||++..
T Consensus       170 SvV~--kdVp~~~i~~G~PA~~~g  191 (259)
T d1j2za_         170 SALG--KDVPPYCTVEGNRAFIRG  191 (259)
T ss_dssp             CEEC--SBBCTTEEEETTBTEEEE
T ss_pred             eeec--cccccceeEEeccccccc
Confidence            9999  999999999999999764

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.8e-22  Score=166.38  Aligned_cols=125  Identities=20%  Similarity=0.308  Sum_probs=104.0

Q ss_pred             eeCCCcEEcCCcE--EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCC
Q 039842           74 KVAVDAYVAPNVV--LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCP  151 (284)
Q Consensus        74 ~i~~~~~I~~~a~--i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~  151 (284)
                      .+++ ++|.++..  ++.+++||++++|+++|+|. +.+.++||++|.|+++|.|+...+                    
T Consensus        55 ~~~~-~~i~~p~~~~~G~ni~IG~~~~I~~~~~I~-d~~~I~IG~~~~Ig~~v~I~~~~~--------------------  112 (182)
T d1ocxa_          55 QVTE-AYIEPTFRCDYGYNIFLGNNFFANFDCVML-DVCPIRIGDNCMLAPGVHIYTATH--------------------  112 (182)
T ss_dssp             BCSS-EEECSCEEESSSTTEEECSSEEECSSEEEE-CSSCEEECTTCEECTTCEEECEEC--------------------
T ss_pred             CCCC-eEEECCEEEEeccceeECCccEECCCcEEe-cCCeEEECCCeEECcCceEeeccc--------------------
Confidence            3443 56777665  47899999999999999995 777899999999999999986544                    


Q ss_pred             CCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccC
Q 039842          152 RSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNP  230 (284)
Q Consensus       152 ~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~p  230 (284)
                                     +++.+....++.+ .+++||++||||.+|+|.+|++||++|+|+++++|.  ++||++++++|+|
T Consensus       113 ---------------~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsvV~--kdvp~~~i~~G~P  175 (182)
T d1ocxa_         113 ---------------PIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVT--KDVPDNVVVGGNP  175 (182)
T ss_dssp             ---------------CSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC--SCBCSSEEEETTT
T ss_pred             ---------------ccceeeeeccceEcceeEECceEeeCceeeccCcEEECCCCEECCCCEEc--cCCCCCeEEEeeC
Confidence                           2333333344444 356999999999999999999999999999999999  8999999999999


Q ss_pred             ceeeccC
Q 039842          231 ARFVRTL  237 (284)
Q Consensus       231 a~~~~~~  237 (284)
                      |++++++
T Consensus       176 Ak~ir~i  182 (182)
T d1ocxa_         176 ARIIKKL  182 (182)
T ss_dssp             TEEEEEC
T ss_pred             CEEEeeC
Confidence            9998864

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.85  E-value=1.2e-20  Score=156.74  Aligned_cols=157  Identities=14%  Similarity=0.191  Sum_probs=97.8

Q ss_pred             CceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEEC----------------CCCEEecCCCCCc-
Q 039842           72 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQ----------------ERCVLHAAWNSPY-  134 (284)
Q Consensus        72 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~----------------~~~~I~~~~~~~~-  134 (284)
                      -..+++++.|+|++.|.++++||++|.|+++++|. +   ..||++|.|.                +++.++....... 
T Consensus        14 ~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~-~---~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~~~~~i~~~   89 (196)
T d1g97a1          14 DVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVV-D---STIGAGAVITNSMIEESSVADGVIVGPYAHIRPNSSLGAQ   89 (196)
T ss_dssp             TCEECTTCEECTTCEEESSCEECTTCEECTTCEEE-S---CEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTT
T ss_pred             CcEECCCCEECCCCEECCCcEECCCceEcCceEee-e---eecccCccccccceeeccccCcceeecceecccccccccc
Confidence            35688888888888888889999999999888884 3   4455554443                2222222111000 


Q ss_pred             ccccceeeeecccccCCCCCccccccCCcceEECCCCEECCCcee--------eccEECCCCEECCCcEEcCCCEECCCC
Q 039842          135 RFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL--------RSCTIEPECIIGQHSILMEGSMVETHA  206 (284)
Q Consensus       135 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I--------~~v~Igd~v~IG~~s~I~~gv~Ig~~~  206 (284)
                      ...+....+....+ ......... ..-....+++++.+++++..        ++++||++||||.++.|.++++||+++
T Consensus        90 ~~i~~~~~~~~~~~-~~~~~~~~~-~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~gv~IG~~s  167 (196)
T d1g97a1          90 VHIGNFVEVKGSSI-GENTKAGHL-TYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGDNS  167 (196)
T ss_dssp             CEEEEEEEEESCEE-CTTCEEEEE-EEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSCEECTTC
T ss_pred             eeecccccceeeec-CcceEecce-EEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEEcCCcEECCCC
Confidence            00000000000000 000000000 00012334444444444433        358899999999999999999999999


Q ss_pred             EEcCCCeeCCCCeeCCCCEEeccCceeecc
Q 039842          207 ILEAGSVLPPGRRIPTGELWAGNPARFVRT  236 (284)
Q Consensus       207 ~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~  236 (284)
                      +|+++++|.  ++||++++++|+||+++|+
T Consensus       168 ~IgagsvVt--kdvp~~~i~~G~Pak~~k~  195 (196)
T d1g97a1         168 LVGAGSTIT--KDVPADAIAIGRGRQINKD  195 (196)
T ss_dssp             EECTTCEEC--SCBCTTCEECCCCCCCCCC
T ss_pred             EECCCCEEC--cCcCCCCEEEecCCEEecC
Confidence            999999999  8999999999999998875

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.84  E-value=1.6e-20  Score=157.05  Aligned_cols=116  Identities=16%  Similarity=0.294  Sum_probs=99.2

Q ss_pred             cEEcCCcEEecceEE--CCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcc
Q 039842           79 AYVAPNVVLAGQVTV--CDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSL  156 (284)
Q Consensus        79 ~~I~~~a~i~~~v~I--G~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  156 (284)
                      .+|+|++.|..++.|  |.++.|+++++|..+   +.||++|.|..++.|..                            
T Consensus        75 ~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~~----------------------------  123 (193)
T d3bswa1          75 NLIHKSALISPSAIVEENAGILIMPYVVINAK---AKIEKGVILNTSSVIEH----------------------------  123 (193)
T ss_dssp             CEECTTCEECTTSEECTTSCCEECTTCEECTT---CEECTTCEECTTCEECT----------------------------
T ss_pred             eecCCCcEEeeeeEEccccCceEeeeeeecCC---ceeeeccccccccccce----------------------------
Confidence            467777777777667  446788888888544   78888888888888842                            


Q ss_pred             ccccCCcceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          157 YIAWLPAETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       157 ~~~~~~~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                             ++.||+++.+++++.+. .++||++||||++|+|.++++||++|+|+++++|.  +++|++++++|+|||.+
T Consensus       124 -------~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV~--~dv~~~~~~~G~PAk~i  193 (193)
T d3bswa1         124 -------ECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLV--KNQDEKGVFVGVPAKRM  193 (193)
T ss_dssp             -------TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC--SCBCSCCEECCCCCCCC
T ss_pred             -------eeeccccccccccccccccceeeccccCCceeeEcCCeEECCCCEECCCCEEC--cCCCCCcEEEEeCCEEC
Confidence                   47899999999999985 59999999999999999999999999999999999  88999999999999863

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.84  E-value=2.1e-21  Score=163.74  Aligned_cols=144  Identities=15%  Similarity=0.115  Sum_probs=97.2

Q ss_pred             eCCCcEEcCCcEEec-ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842           75 VAVDAYVAPNVVLAG-QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS  153 (284)
Q Consensus        75 i~~~~~I~~~a~i~~-~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (284)
                      +++++.|+++++|.+ ...+++.+.+++++.|.++   +.||++|.|+++|+|.......   .+..+.+...       
T Consensus        26 i~~nV~IG~~~~I~~~~~~~~~~~~i~~~~~I~~~---v~IG~~~~Ig~gv~I~~~~~~~---i~d~~~~~~~-------   92 (203)
T d1mr7a_          26 KLENVEVGEYSYYDSKNGETFDKQILYHYPILNDK---LKIGKFCSIGPGVTIIMNGANH---RMDGSTYPFN-------   92 (203)
T ss_dssp             TSTTEEECTTCEEECSSSCCGGGGEESCCGGGCCC---EEECSSCEECTTCEEECGGGCC---CCSSCCCCGG-------
T ss_pred             ECCCEEECCCcEEcCCcCcccCceEEeeeCEECCc---cEECCCeEECCCCcEeeecCcE---eccCceEeee-------
Confidence            455556666665544 3334456666777776544   9999999999999986432210   0000000000       


Q ss_pred             CccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCce
Q 039842          154 NSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR  232 (284)
Q Consensus       154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~  232 (284)
                              .....+++++.+...+.+ ++++|||+||||++|+|.++++||++|+|+++|+|.  +++|++++++|+||+
T Consensus        93 --------~~~~~~~~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~--kdv~~~~i~~G~PAk  162 (203)
T d1mr7a_          93 --------LFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVV--KDIAPYMLAGGNPAN  162 (203)
T ss_dssp             --------GGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEEC--SCBCTTEEEEETTEE
T ss_pred             --------eecccccCcccccccccCccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEe--eeCCCCEEEEEeCCE
Confidence                    000112233333333333 468999999999999999999999999999999999  889999999999999


Q ss_pred             eeccCCHHH
Q 039842          233 FVRTLTHEE  241 (284)
Q Consensus       233 ~~~~~~~~~  241 (284)
                      +++++.++|
T Consensus       163 ~ik~r~~~e  171 (203)
T d1mr7a_         163 EIKQRFDQD  171 (203)
T ss_dssp             EEEESSCHH
T ss_pred             EEeccCCHH
Confidence            999876554

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.83  E-value=5.9e-21  Score=161.57  Aligned_cols=66  Identities=23%  Similarity=0.360  Sum_probs=58.4

Q ss_pred             eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC-CHHHHhhhhh
Q 039842          180 RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL-THEETLEIPK  247 (284)
Q Consensus       180 ~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~-~~~~~~~~~~  247 (284)
                      ++++|||+||||++|+|.++++||++|+|+++++|.  +++|++++++|+||++++++ ++++..++.+
T Consensus       107 g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVt--kdvp~~si~~G~PAk~ik~R~~~~~i~~l~~  173 (208)
T d1xata_         107 GDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVT--GDVEPYAIVGGNPARTIRKRFSDGDIQNLLE  173 (208)
T ss_dssp             CCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC--SCBCTTEEEETTTTEEEEESSCHHHHHHHHH
T ss_pred             CCEEEcCCeEECccccccCCeEeCCCCEEeCceEEe--ecCCcCcEEEecCCEEEeccCCHHHHHHHHH
Confidence            568999999999999999999999999999999999  89999999999999999885 4444444433

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=9.7e-18  Score=139.90  Aligned_cols=162  Identities=15%  Similarity=0.119  Sum_probs=103.6

Q ss_pred             ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCC-------------CcEEECCCCEECCCCEEecCCCCCcccccc
Q 039842           73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDL-------------NKITVGFCSNVQERCVLHAAWNSPYRFVGF  139 (284)
Q Consensus        73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~-------------~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~  139 (284)
                      ..+++++.|+|+++|.+++.||++|.|+++++|....             ....++.+|.+++++.+.............
T Consensus        15 v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~~~i~   94 (201)
T d2oi6a1          15 LTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVG   94 (201)
T ss_dssp             EEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEE
T ss_pred             EEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccccceeeeeeeeec
Confidence            3678999999999999999999999999999996320             012344445554444443322211111111


Q ss_pred             eeeeecccccCCCCCccccccCCcceEECCCCEECCCcee--------eccEECCCCEECCCcEEcCCCEECCCCEEcCC
Q 039842          140 VSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL--------RSCTIEPECIIGQHSILMEGSMVETHAILEAG  211 (284)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I--------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~  211 (284)
                      .+................. .+-.++.+++++.++.++..        .++.|||+||||.++.|.++++||++++|+++
T Consensus        95 ~~~~~~~~~ig~~~~i~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG~~s~Igag  173 (201)
T d2oi6a1          95 NFVEMKKARLGKGSKAGHL-TYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAG  173 (201)
T ss_dssp             EEEEEEEEEECTTCEEEEE-EEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTT
T ss_pred             ceeeeeeeeeCCCeEEcee-eeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCCcEECCCCEECCC
Confidence            1111111000000000111 11124566677777766644        25899999999999999999999999999999


Q ss_pred             CeeCCCCeeCCCCEEec-cCceeeccC
Q 039842          212 SVLPPGRRIPTGELWAG-NPARFVRTL  237 (284)
Q Consensus       212 s~V~~~~~I~~~~vv~G-~pa~~~~~~  237 (284)
                      ++|.  ++||+++++.| .|++.++.+
T Consensus       174 svV~--kdVp~~si~vg~~~~~~~~~~  198 (201)
T d2oi6a1         174 TTVT--RNVGENALAISRVPQTQKEGW  198 (201)
T ss_dssp             CEEC--SCBCTTCEECCCCCCCCCTTC
T ss_pred             CEEe--eecCCCCEEEecccceEccCc
Confidence            9999  89999998555 888877654

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.75  E-value=1.7e-17  Score=144.44  Aligned_cols=163  Identities=15%  Similarity=0.152  Sum_probs=109.7

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCC-Ccccccceeeeecccc----
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS-PYRFVGFVSLLIDLQM----  148 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~-~~~~~g~~~~~~~~~~----  148 (284)
                      .|+++|.|+|+|.|+.+|+||++|+|+++++|. +.  ++|+++|+|+.++.|+..+.. +...+|..........    
T Consensus         2 ~Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig-~~--~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~   78 (259)
T d1j2za_           2 KIAKTAIISPKAEINKGVEIGEFCVIGDGVKLD-EG--VKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSE   78 (259)
T ss_dssp             CBCTTCEECTTSEECTTCEECTTCEECTTCEEC-TT--CEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCE
T ss_pred             cCCCCCEECCCCEECCCCEECCCCEECCCCEEC-CC--CEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccce
Confidence            578899999999999999999999999888884 33  777777777777777654431 1111221111000000    


Q ss_pred             ------cCCCCCcc-c-cc-cCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCC
Q 039842          149 ------SCPRSNSL-Y-IA-WLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGR  218 (284)
Q Consensus       149 ------~~~~~~~~-~-~~-~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~  218 (284)
                            ..-+.... . .. ....+++||+++.|+.++.+ +.+.||++++++.++.+..+++||++|+||.++.|.++.
T Consensus        79 ~~ig~~~~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv  158 (259)
T d1j2za_          79 LIIGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFV  158 (259)
T ss_dssp             EEECSSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTC
T ss_pred             EEeccccccccccccccccccccccccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeeccc
Confidence                  00000000 0 00 00134667777777777777 568888888888888999999999999999999999999


Q ss_pred             eeCCCCEEeccCceeeccCCHH
Q 039842          219 RIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       219 ~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      .|++++++.+ -+.+.+++++.
T Consensus       159 ~IG~~a~Iga-gSvV~kdVp~~  179 (259)
T d1j2za_         159 RIAKGCMIAG-KSALGKDVPPY  179 (259)
T ss_dssp             EECTTCEECT-TCEECSBBCTT
T ss_pred             Eeccceeeee-eeeeccccccc
Confidence            9999999654 47777777654

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.71  E-value=3.3e-17  Score=141.10  Aligned_cols=107  Identities=21%  Similarity=0.225  Sum_probs=79.6

Q ss_pred             EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceE
Q 039842           87 LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETS  166 (284)
Q Consensus        87 i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~  166 (284)
                      +..++.|++++.|++++.|. ....++||+++.|+++|.|..+                                   ++
T Consensus       134 ~~~g~~I~~~~~Ig~g~~i~-h~~givig~~~~ig~~~~i~~~-----------------------------------v~  177 (241)
T d1ssqa_         134 VAFDVDIHPAAKIGHGIMFD-HATGIVVGETSVIENDVSILQG-----------------------------------VT  177 (241)
T ss_dssp             HHHSCEECTTCEECSSCEES-SCTTCEECTTCEECTTCEECTT-----------------------------------CE
T ss_pred             hheeeccccCCEEccCcccC-ccceEEEeccceecCCeeeccc-----------------------------------cc
Confidence            34466666666667777663 4445777777777777766432                                   22


Q ss_pred             ECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842          167 IERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV  234 (284)
Q Consensus       167 Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~  234 (284)
                      ++.....   ..-..++|||+||||+|++|.++++||++|+||+|++|.  ++||++++++|+|||++
T Consensus       178 ~~~~~~~---~~~~~~~Ig~~v~IGaga~Ilg~v~IG~~a~IgAgsvV~--kdVp~~~vv~G~PAr~I  240 (241)
T d1ssqa_         178 LGGTGKE---SGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVL--NPVPEYATAAGVPARIV  240 (241)
T ss_dssp             EECCSSS---CSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEEC--SCBCTTCEEETTTTEEC
T ss_pred             ccccccC---CCCCCCccCCCeEECCCCEEcCCcEECCCCEECCCCEEC--CCCCCCCEEEecCcEEe
Confidence            2221110   111457999999999999999999999999999999999  89999999999999986

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.68  E-value=2.5e-16  Score=128.61  Aligned_cols=111  Identities=22%  Similarity=0.343  Sum_probs=84.7

Q ss_pred             CcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccc
Q 039842           78 DAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLY  157 (284)
Q Consensus        78 ~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  157 (284)
                      ++.|.|.  .+..++||++|+|+++++|.++   +.||++|.|+++|+|....                           
T Consensus         2 ~a~i~~~--~~~~~~Ig~~~~I~~~a~I~~~---v~IG~~~~Ig~~~~I~~~~---------------------------   49 (172)
T d1xhda_           2 NAMIYPY--KEKKPKIASSAFIADYVTITGD---VYVGEESSIWFNTVIRGDV---------------------------   49 (172)
T ss_dssp             CCEEECB--TTBCCEECTTCEECTTCEEEEE---EEECTTCEECTTCEEEEEE---------------------------
T ss_pred             CcEEEec--CCcCCEECCCcEECCCCEEeCC---EEECCCcEecCCccccccc---------------------------
Confidence            4556653  2456799999999999999876   9999999999999997531                           


Q ss_pred             cccCCcceEECCCCEECCCceeec-----cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842          158 IAWLPAETSIERFVTIGAYCSLRS-----CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW  226 (284)
Q Consensus       158 ~~~~~~~v~Ig~~v~Ig~~~~I~~-----v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv  226 (284)
                           ..+.||+++.++.++.++.     ++||+++.++.++.+ .++.|+++++|+.+++|.+++.|++++++
T Consensus        50 -----~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~-~~~~i~~~~~ig~~~~i~~gv~IG~~~~I  117 (172)
T d1xhda_          50 -----SPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVIL-HSCHIKKDALIGMGSIILDGAEIGEGAFI  117 (172)
T ss_dssp             -----EEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEE-ESCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             -----ccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecc-cccccccceEEecccEeeCCcEEcCcccc
Confidence                 1489999999999999854     799999998888875 34566666666666666655556555554

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.66  E-value=1.3e-16  Score=134.65  Aligned_cols=101  Identities=10%  Similarity=0.088  Sum_probs=83.3

Q ss_pred             eEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCC
Q 039842           91 VTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERF  170 (284)
Q Consensus        91 v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~  170 (284)
                      ..|++.++|+|+++|.|+   +.||++|.|+++|+|..+..                               .+++||++
T Consensus        23 p~I~~~a~I~p~A~i~g~---V~IG~~~~Igp~~vIrgd~~-------------------------------~~i~IG~~   68 (210)
T d1qrea_          23 PVIDPTAYIDPQASVIGE---VTIGANVMVSPMASIRSDEG-------------------------------MPIFVGDR   68 (210)
T ss_dssp             CEECTTCEECTTCEEEES---EEECTTCEECTTCEEEESSS-------------------------------CCEEECTT
T ss_pred             CccCCCCEECCCCEEecc---eEECCCCEEccCeeeecccC-------------------------------CceEEccc
Confidence            357778888888888877   99999999999999975422                               24889999


Q ss_pred             CEECCCceee------------------------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842          171 VTIGAYCSLR------------------------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW  226 (284)
Q Consensus       171 v~Ig~~~~I~------------------------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv  226 (284)
                      |.|+++|+|+                        .++||++|+||.++.|.++|+||++|+||++++|.. ..|++++++
T Consensus        69 ~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~-~~IG~~~vI  147 (210)
T d1qrea_          69 SNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVL  147 (210)
T ss_dssp             CEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEE
T ss_pred             ceeeeeeEeccceeeccccccccCccccccccccceeeccccccccccccccCCcccCCcEeeCCccccc-cccccCcEE
Confidence            9999999884                        488999999999999999999999999999987763 245555554

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.61  E-value=8.6e-15  Score=127.37  Aligned_cols=157  Identities=15%  Similarity=0.213  Sum_probs=97.8

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN  154 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~  154 (284)
                      |+++++|+|++.|.+++.||++|.|+|+|+|..+   ++||++|.|+++|+|+....     +|..+.+...........
T Consensus         2 i~~~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~---v~Ig~~~~I~~~~~I~~~~~-----ig~~~~i~~~~~~~~~~~   73 (262)
T d2jf2a1           2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPH---VEIGEGTVLKSHVVVNGHTK-----IGRDNEIYQFASIGEVNQ   73 (262)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEECTT---EEECTTCEECSSCEECSEEE-----ECSSCEECTTCEEEECCC
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCC---CEECCCCEEeCCEEEcCCcc-----ccccceeeeecccceeec
Confidence            4566777777777777777777777777777544   77777777777777754322     222222221111000000


Q ss_pred             ccccccCCcceEECCCCEECCCceee--------------------------ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          155 SLYIAWLPAETSIERFVTIGAYCSLR--------------------------SCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------------------------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                      ..........+.||+++.|+++|.++                          ++.||++|+++.++.+.++++||++|+|
T Consensus        74 ~~~~~~~~~~v~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~i  153 (262)
T d2jf2a1          74 DLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAII  153 (262)
T ss_dssp             CTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEE
T ss_pred             cccccccCceEEECCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEe
Confidence            00011122346677777666666653                          3555566666666667778999999999


Q ss_pred             cCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842          209 EAGSVLPPGRRIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       209 ~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      |+++.|.++..|++++++++ -+.+.+++++.
T Consensus       154 g~~~~i~~~v~IG~~a~iga-gS~Vtkdvp~~  184 (262)
T d2jf2a1         154 GGMTAVHQFCIIGAHVMVGG-CSGVAQDVPPY  184 (262)
T ss_dssp             CTTCEECTTCEECTTCEECS-SCEECSBBCTT
T ss_pred             ccCceeccccEeehhceeec-cceEeecCCcc
Confidence            99999999999999988654 47777777765

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.59  E-value=1.2e-14  Score=124.70  Aligned_cols=112  Identities=21%  Similarity=0.314  Sum_probs=85.3

Q ss_pred             CcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccc
Q 039842           78 DAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLY  157 (284)
Q Consensus        78 ~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  157 (284)
                      +..+-|++.+..++.|++++++.| ++|.-.   .+||++|.|..+++|+.                             
T Consensus       102 g~RvvPga~VR~GayI~~~vVlmp-s~VNig---A~ig~~~midt~a~vgs-----------------------------  148 (274)
T d3tdta_         102 GFRVVPPATVRQGAFIARNTVLMP-SYVNIG---AYVDEGTMVDTWATVGS-----------------------------  148 (274)
T ss_dssp             CCEECTTCEEBTTCEECTTCEECS-EEECTT---CEECTTCEECTTEEECT-----------------------------
T ss_pred             CEEeCCCceeccCcEECCCcEEee-eEeccc---cEEcCCcEEcccceecc-----------------------------
Confidence            356666666666666666665554 455322   56677777777777753                             


Q ss_pred             cccCCcceEECCCCEECCCceee---------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCC----------
Q 039842          158 IAWLPAETSIERFVTIGAYCSLR---------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGR----------  218 (284)
Q Consensus       158 ~~~~~~~v~Ig~~v~Ig~~~~I~---------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~----------  218 (284)
                            .+.||++|.|+.++.|.         +++|+|+|+||++|.|.+|+.||++++|++|++|++.+          
T Consensus       149 ------~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~~t~i~d~~~g~~  222 (274)
T d3tdta_         149 ------CAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEI  222 (274)
T ss_dssp             ------TCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCE
T ss_pred             ------eeEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEeccccceeccCCcE
Confidence                  36899999999999885         47899999999999999999999999999999999531          


Q ss_pred             ---eeCCCCEEec
Q 039842          219 ---RIPTGELWAG  228 (284)
Q Consensus       219 ---~I~~~~vv~G  228 (284)
                         .||++++++.
T Consensus       223 ~~g~vP~~svvv~  235 (274)
T d3tdta_         223 HYGRVPAGSVVVS  235 (274)
T ss_dssp             ESSEECTTEEEEE
T ss_pred             eccccCCCCEEec
Confidence               6999988863

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.53  E-value=6.8e-14  Score=115.21  Aligned_cols=43  Identities=5%  Similarity=0.120  Sum_probs=34.6

Q ss_pred             cCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842          197 MEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       197 ~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      ..++.||++|+|+.++.|.++..|++++++. .-+.+.+++++.
T Consensus       140 ~~~~~Ig~~~~iG~~~~I~~gv~IG~~s~Ig-agsvVtkdvp~~  182 (196)
T d1g97a1         140 KYKTVIGNNVFVGSNSTIIAPVELGDNSLVG-AGSTITKDVPAD  182 (196)
T ss_dssp             BCCEEECTTCEECTTCEEESSCEECTTCEEC-TTCEECSCBCTT
T ss_pred             eeeeEEecCCEEeeeeEEcCCcEECCCCEEC-CCCEECcCcCCC
Confidence            3568899999999999999999999998854 446677777664

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.50  E-value=6.4e-14  Score=114.04  Aligned_cols=104  Identities=14%  Similarity=0.178  Sum_probs=67.4

Q ss_pred             ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEE
Q 039842           88 AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSI  167 (284)
Q Consensus        88 ~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~I  167 (284)
                      +.+++||++|+|+++++|.++   ++||++|.|+++|+|....                                .+++|
T Consensus         8 g~~~~I~~~~~I~~~a~I~g~---v~IG~~~~Ig~~~~I~~~~--------------------------------~~v~i   52 (173)
T d1v3wa_           8 GKKPRIHPSAFVDENAVVIGD---VVLEEKTSVWPSAVLRGDI--------------------------------EQIYV   52 (173)
T ss_dssp             TBCCEECTTCEECTTSEEEEE---EEECTTCEECTTCEEEEEE--------------------------------EEEEE
T ss_pred             CCCCEECcCcEECCCCEEeCc---eEECCCCEECCCccccccc--------------------------------ccccc
Confidence            346789999999999999876   9999999999999997532                                14788


Q ss_pred             CCCCEECCCceee-----ccEECCCCEECC-----CcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842          168 ERFVTIGAYCSLR-----SCTIEPECIIGQ-----HSILMEGSMVETHAILEAGSVLPPGRRIPTGELW  226 (284)
Q Consensus       168 g~~v~Ig~~~~I~-----~v~Igd~v~IG~-----~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv  226 (284)
                      ++++.++.++.++     .+.+++++.+..     .+.|++++.||.+|+|.++++|++++.|++++++
T Consensus        53 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV  121 (173)
T d1v3wa_          53 GKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVV  121 (173)
T ss_dssp             CTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEE
T ss_pred             ccccccccccccccccCCCcccCcceeeeeeeeeeeeecCCcccccceeeecCCEEEcceeEEcCCcEE
Confidence            9999998888874     344555544433     2333333444444444444444444444444443

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.3e-13  Score=114.30  Aligned_cols=152  Identities=14%  Similarity=0.158  Sum_probs=101.4

Q ss_pred             EEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc-----------cCCCCC
Q 039842           86 VLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM-----------SCPRSN  154 (284)
Q Consensus        86 ~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~  154 (284)
                      .|.+.++||+++.|+++|+|.++   +.||++|.|+++|+|..............+...+...           ......
T Consensus        10 ~i~~~v~IG~~v~Ig~~vvI~~~---v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~   86 (201)
T d2oi6a1          10 DLRGTLTHGRDVEIDTNVIIEGN---VTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAE   86 (201)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEE---EEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCE
T ss_pred             EECceEEECCCCEECCCCEECCc---eEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCccccccccee
Confidence            57888889999999999999765   9999999999999997554322222222221111100           000000


Q ss_pred             cc-----ccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEc-------CCCEECCCCEEcCCCeeCCCCeeCC
Q 039842          155 SL-----YIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILM-------EGSMVETHAILEAGSVLPPGRRIPT  222 (284)
Q Consensus       155 ~~-----~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~-------~gv~Ig~~~~I~a~s~V~~~~~I~~  222 (284)
                      ..     .....-..+.+|+++.+++.+.+..+.+++++.+++++...       .++.||++|+|+.++.|.++..|++
T Consensus        87 ~~~~~~i~~~~~~~~~~ig~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG~  166 (201)
T d2oi6a1          87 LLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGK  166 (201)
T ss_dssp             ECTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSEEECT
T ss_pred             eeeeeeecceeeeeeeeeCCCeEEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCCcEECC
Confidence            00     00001124667777777777777788888999998887543       3688999999999999999999999


Q ss_pred             CCEEeccCceeeccCCHHH
Q 039842          223 GELWAGNPARFVRTLTHEE  241 (284)
Q Consensus       223 ~~vv~G~pa~~~~~~~~~~  241 (284)
                      ++++++ .+.+.+++++..
T Consensus       167 ~s~Iga-gsvV~kdVp~~s  184 (201)
T d2oi6a1         167 GATIAA-GTTVTRNVGENA  184 (201)
T ss_dssp             TCEECT-TCEECSCBCTTC
T ss_pred             CCEECC-CCEEeeecCCCC
Confidence            988654 466777776653

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=2.2e-13  Score=113.70  Aligned_cols=114  Identities=14%  Similarity=0.103  Sum_probs=72.8

Q ss_pred             EECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCC
Q 039842           92 TVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFV  171 (284)
Q Consensus        92 ~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v  171 (284)
                      .||++++|+|++.+. .+..+.||++|.|+.+|+|....                                 .++||++|
T Consensus        56 ~iG~~~~I~p~~~i~-~G~nv~IG~~~~I~~~~~I~~~~---------------------------------~i~IG~~v  101 (200)
T d1krra_          56 TVGENAWVEPPVYFS-YGSNIHIGRNFYANFNLTIVDDY---------------------------------TVTIGDNV  101 (200)
T ss_dssp             BCCSSCEECSCEEES-CSTTEEECSSCEECSCEEEECSS---------------------------------CEEECSSC
T ss_pred             cCCCCCEEcCCEEEe-cCCccEECCccEECceEEEecCC---------------------------------CcEeCCCc
Confidence            477777777777763 23458999999999999996432                                 48999999


Q ss_pred             EECCCceeec-cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842          172 TIGAYCSLRS-CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE  240 (284)
Q Consensus       172 ~Ig~~~~I~~-v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~  240 (284)
                      .|+++++|.. ....+......+..+...++||++|+||++++|.++..|++++++ |..+.+.+++++.
T Consensus       102 ~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~~~vI-gagSvV~kdvp~~  170 (200)
T d1krra_         102 LIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVI-GAGSIVTKDIPPN  170 (200)
T ss_dssp             EECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECTTCEE-CTTCEECSCBCTT
T ss_pred             cccceeEEecccccceecccccceeecceEEEccCcccceeeecccccccCCCcEE-eCCCEEeeEcCCC
Confidence            9999999854 334444444444444555555555555555555555555555553 3334444555443

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=2.2e-13  Score=96.53  Aligned_cols=37  Identities=22%  Similarity=0.479  Sum_probs=22.3

Q ss_pred             EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEE
Q 039842           87 LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVL  126 (284)
Q Consensus        87 i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I  126 (284)
                      |.+++.||+++.|+++++|+++   ++||++|.|+++|+|
T Consensus        11 I~g~v~IG~~~~I~~~~~i~g~---~~IG~~v~Ig~~~~i   47 (78)
T d1fxja1          11 LRGTLTHGRDVEIDTNVIIEGN---VTLGHRVKIGTGCVI   47 (78)
T ss_dssp             EEEEEEECSSCEECTTEEEEEE---EEECTTCEECTTCEE
T ss_pred             EeccEEECCCCEECCccEEeCC---cEECCCCEECCCeEE
Confidence            4556666666666666666544   555555555555555

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.44  E-value=5.6e-13  Score=110.51  Aligned_cols=71  Identities=15%  Similarity=0.240  Sum_probs=35.0

Q ss_pred             EECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC
Q 039842          166 SIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL  237 (284)
Q Consensus       166 ~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~  237 (284)
                      .||++|.|+.++.| +.+.||++|.|+.++.+...++||++|+||++++|.++..|++++++ |..+.+.+++
T Consensus       108 ~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~I-gagsvV~~dv  179 (193)
T d3bswa1         108 KIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSIL-GGGATLVKNQ  179 (193)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE-CTTCEECSCB
T ss_pred             eeeeccccccccccceeeeccccccccccccccccceeeccccCCceeeEcCCeEECCCCEE-CCCCEECcCC
Confidence            34444444444444 23455555555555555555555555555555555555555555542 3334444443

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=2.7e-13  Score=96.04  Aligned_cols=68  Identities=19%  Similarity=0.418  Sum_probs=60.8

Q ss_pred             EEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCEECCCceeeccE
Q 039842          104 VLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCT  183 (284)
Q Consensus       104 ~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~  183 (284)
                      .|.++   +.||++|.|+++++|+.                                   +++||++|.||++|+|++++
T Consensus        10 ~I~g~---v~IG~~~~I~~~~~i~g-----------------------------------~~~IG~~v~Ig~~~~i~~~~   51 (78)
T d1fxja1          10 DLRGT---LTHGRDVEIDTNVIIEG-----------------------------------NVTLGHRVKIGTGCVIKNSV   51 (78)
T ss_dssp             EEEEE---EEECSSCEECTTEEEEE-----------------------------------EEEECTTCEECTTCEEESCE
T ss_pred             EEecc---EEECCCCEECCccEEeC-----------------------------------CcEECCCCEECCCeEEecCE
Confidence            45555   99999999999999963                                   48999999999999999999


Q ss_pred             ECCCCEECCCcEEcCCCEECCCCEEcC
Q 039842          184 IEPECIIGQHSILMEGSMVETHAILEA  210 (284)
Q Consensus       184 Igd~v~IG~~s~I~~gv~Ig~~~~I~a  210 (284)
                      ||+++.|+++|.| ++++||++|+||+
T Consensus        52 Ig~~~~I~~~s~i-~~~~Ig~~~~IGP   77 (78)
T d1fxja1          52 IGDDCEISPYTVV-EDANLAAACTIGP   77 (78)
T ss_dssp             ECTTCEECTTCEE-ESEEECTTCEESC
T ss_pred             ECCCCEEcCCcEE-ECCEECCCCEECc
Confidence            9999999999988 5799999999886

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.38  E-value=2.6e-13  Score=106.11  Aligned_cols=61  Identities=18%  Similarity=0.346  Sum_probs=44.5

Q ss_pred             eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEE------CCCCEEcCC-CeeCCCCeeCCCCE
Q 039842          165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMV------ETHAILEAG-SVLPPGRRIPTGEL  225 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~I------g~~~~I~a~-s~V~~~~~I~~~~v  225 (284)
                      +.+++++.||++|.|.+++|+++|+||+++.+.+++.+      ++++++..+ ++|++++.||++++
T Consensus        67 ~~i~~~v~Ig~~~~I~~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~v  134 (135)
T d1yp2a1          67 AKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGII  134 (135)
T ss_dssp             TTTCCCSEECTTCEEESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCB
T ss_pred             eEcCCCCEECcceEeccceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcC
Confidence            55678888888888888889999999888888766544      445555555 44566666766665

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=6.6e-12  Score=103.02  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=14.7

Q ss_pred             eEECCCCEECCCcee-eccEECCCCEECCCcEEcC
Q 039842          165 TSIERFVTIGAYCSL-RSCTIEPECIIGQHSILME  198 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~  198 (284)
                      ++||++|+||.+|+| .+++||++|+||++|+|..
T Consensus       129 v~Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsvV~k  163 (182)
T d1ocxa_         129 VTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTK  163 (182)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             eEECceEeeCceeeccCcEEECCCCEECCCCEEcc
Confidence            444444444444444 2244444444444444433

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.26  E-value=1.1e-11  Score=105.89  Aligned_cols=138  Identities=21%  Similarity=0.204  Sum_probs=81.4

Q ss_pred             eeCCCcEEcCCcEEecceEECCCCEECCCCEEecC---CCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccC
Q 039842           74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD---LNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSC  150 (284)
Q Consensus        74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~---~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~  150 (284)
                      .+-.+++|++++++.+ ..|--+++|++++.|...   +....||++|.|+.++.|+....                   
T Consensus       110 ~VR~GayI~~~vVlmp-s~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvle-------------------  169 (274)
T d3tdta_         110 TVRQGAFIARNTVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLE-------------------  169 (274)
T ss_dssp             EEBTTCEECTTCEECS-EEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBT-------------------
T ss_pred             eeccCcEECCCcEEee-eEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccc-------------------
Confidence            4556677777765543 444555555555555321   00145555555555555542211                   


Q ss_pred             CCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCC-------EEcCCCeeCCCCeeCC
Q 039842          151 PRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHA-------ILEAGSVLPPGRRIPT  222 (284)
Q Consensus       151 ~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~-------~I~a~s~V~~~~~I~~  222 (284)
                              +....+++|+++|+||++|.+ .++.||++++||+|++|...+.|=|..       .|.++++|-+++ +|.
T Consensus       170 --------p~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~~t~i~d~~~g~~~~g~vP~~svvv~gs-~p~  240 (274)
T d3tdta_         170 --------PLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGN-LPS  240 (274)
T ss_dssp             --------TBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEESSEECTTEEEEEEE-EEC
T ss_pred             --------cCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEeccccceeccCCcEeccccCCCCEEecCc-eec
Confidence                    112246999999999999987 789999999999999998876664432       366676665443 222


Q ss_pred             C--CEEeccCceeeccCCHHH
Q 039842          223 G--ELWAGNPARFVRTLTHEE  241 (284)
Q Consensus       223 ~--~vv~G~pa~~~~~~~~~~  241 (284)
                      .  .. .=..+.+++.++++.
T Consensus       241 ~~~~~-~l~cavIvk~~d~~t  260 (274)
T d3tdta_         241 KDGSY-SLYCAVIVKKVDAKT  260 (274)
T ss_dssp             TTSSC-EEEEEEEEEECCHHH
T ss_pred             CCCCc-CCcceEEEEeccCcc
Confidence            2  11 001355667766543

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.23  E-value=2.4e-11  Score=94.63  Aligned_cols=49  Identities=14%  Similarity=0.247  Sum_probs=22.8

Q ss_pred             eEECCCCEECCCcee-eccEECCCCEECCCcEEcCC-CEECCCCEEcCCCe
Q 039842          165 TSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEG-SMVETHAILEAGSV  213 (284)
Q Consensus       165 v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~g-v~Ig~~~~I~a~s~  213 (284)
                      ++|+++|.||++|.+ ..+.+.+.+.++.++++.++ ++||++++|++|++
T Consensus        84 ~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~v  134 (135)
T d1yp2a1          84 AIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGII  134 (135)
T ss_dssp             EEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCB
T ss_pred             ceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcC
Confidence            445555555555544 22333333444444444444 44555555555554

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.20  E-value=2.7e-12  Score=107.12  Aligned_cols=76  Identities=13%  Similarity=0.215  Sum_probs=45.4

Q ss_pred             ceEECCCCEECCCcee---eccEECCCCEE---------------CCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842          164 ETSIERFVTIGAYCSL---RSCTIEPECII---------------GQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL  225 (284)
Q Consensus       164 ~v~Ig~~v~Ig~~~~I---~~v~Igd~v~I---------------G~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v  225 (284)
                      ++.||++|.|+++|.|   ....++|++.+               ..++.+..+++||++|+||++++|.++..|+++++
T Consensus        60 ~v~IG~~~~Ig~gv~I~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~  139 (203)
T d1mr7a_          60 KLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAI  139 (203)
T ss_dssp             CEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCE
T ss_pred             ccEECCCeEECCCCcEeeecCcEeccCceEeeeeecccccCcccccccccCccCeEECCEEEECCceeEEeEEEEcCCCE
Confidence            3667777777777766   22334444433               22333455677777777777777777777777766


Q ss_pred             EeccCceeeccCCHH
Q 039842          226 WAGNPARFVRTLTHE  240 (284)
Q Consensus       226 v~G~pa~~~~~~~~~  240 (284)
                      + |.-+.+.+++++.
T Consensus       140 I-gagSvV~kdv~~~  153 (203)
T d1mr7a_         140 V-AANSVVVKDIAPY  153 (203)
T ss_dssp             E-CTTCEECSCBCTT
T ss_pred             E-ecCeEEeeeCCCC
Confidence            4 3445555555544

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.17  E-value=1.1e-10  Score=99.58  Aligned_cols=97  Identities=14%  Similarity=0.133  Sum_probs=66.6

Q ss_pred             CCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCc
Q 039842           76 AVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNS  155 (284)
Q Consensus        76 ~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (284)
                      ..++.|+|++.|+.++.|..    +.+.+|...   +.||++|.|..++.++.......                     
T Consensus       135 ~~g~~I~~~~~Ig~g~~i~h----~~givig~~---~~ig~~~~i~~~v~~~~~~~~~~---------------------  186 (241)
T d1ssqa_         135 AFDVDIHPAAKIGHGIMFDH----ATGIVVGET---SVIENDVSILQGVTLGGTGKESG---------------------  186 (241)
T ss_dssp             HHSCEECTTCEECSSCEESS----CTTCEECTT---CEECTTCEECTTCEEECCSSSCS---------------------
T ss_pred             heeeccccCCEEccCcccCc----cceEEEecc---ceecCCeeecccccccccccCCC---------------------
Confidence            34556666666555555532    114444222   66778888888888876543211                     


Q ss_pred             cccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842          156 LYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAIL  208 (284)
Q Consensus       156 ~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I  208 (284)
                            ...++||++|+||+|++| .+++||+++.||+||+|.+++  .+++++
T Consensus       187 ------~~~~~Ig~~v~IGaga~Ilg~v~IG~~a~IgAgsvV~kdV--p~~~vv  232 (241)
T d1ssqa_         187 ------DRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPV--PEYATA  232 (241)
T ss_dssp             ------SCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCB--CTTCEE
T ss_pred             ------CCCCccCCCeEECCCCEEcCCcEECCCCEECCCCEECCCC--CCCCEE
Confidence                  134799999999999976 789999999999999999985  444443

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.10  E-value=1.2e-10  Score=97.26  Aligned_cols=89  Identities=16%  Similarity=0.169  Sum_probs=54.1

Q ss_pred             CcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC---CccccccCCcceEECCCCEECCCceee-ccEEC
Q 039842          110 NKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS---NSLYIAWLPAETSIERFVTIGAYCSLR-SCTIE  185 (284)
Q Consensus       110 ~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~v~Ig~~v~Ig~~~~I~-~v~Ig  185 (284)
                      ..++||++|.|+++|+|....+..... ...+..+ ........   .........++++||++|+||.+|.|. +++||
T Consensus        53 ~~v~IG~~~~I~~g~~I~~~g~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~s~I~~gv~IG  130 (208)
T d1xata_          53 DKLVIGSFCSIGSGAAFIMAGNQGHRA-EWASTFP-FHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVG  130 (208)
T ss_dssp             CCEEECSSCEECTTCEEECSTTTTCCT-TSSCCSC-GGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTTCEEC
T ss_pred             CeeEECCCCEECCCCEEeccCCCcccc-cceeecc-cccccccccccccccCccccCCEEEcCCeEECccccccCCeEeC
Confidence            348999999999999986544321110 0000000 00000000   000001123469999999999999985 59999


Q ss_pred             CCCEECCCcEEcCCC
Q 039842          186 PECIIGQHSILMEGS  200 (284)
Q Consensus       186 d~v~IG~~s~I~~gv  200 (284)
                      ++|+||++|+|..++
T Consensus       131 ~~~vIgagSvVtkdv  145 (208)
T d1xata_         131 HGAIIGSRALVTGDV  145 (208)
T ss_dssp             TTCEECTTCEECSCB
T ss_pred             CCCEEeCceEEeecC
Confidence            999999999998775

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=99.03  E-value=8.6e-10  Score=97.70  Aligned_cols=48  Identities=13%  Similarity=0.111  Sum_probs=21.4

Q ss_pred             eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEE
Q 039842           75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVL  126 (284)
Q Consensus        75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I  126 (284)
                      +.+++.|++++.|.+++.||++++|+ ++.|.++   +.|+++|.|+.++++
T Consensus        72 I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~---a~I~~n~~i~~~~~i  119 (320)
T d2f9ca1          72 ITGNARITQPCTLYNNVRIGDNVWID-RADISDG---ARISDNVTIQSSSVR  119 (320)
T ss_dssp             ECTTCEECSSCEECSSCEECSSCEES-SCEECSS---EEECSSCEEESCEEC
T ss_pred             ECCCCEECCCcEECCCcEECCcEEEC-CcEEEcC---cEEeeeeeecCccEE
Confidence            44444444444444444444444443 3444322   455555555444433

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.80  E-value=8.4e-09  Score=91.15  Aligned_cols=47  Identities=13%  Similarity=0.042  Sum_probs=29.1

Q ss_pred             cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccC
Q 039842          182 CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNP  230 (284)
Q Consensus       182 v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~p  230 (284)
                      ++|++++.|+.++.|.+++.|++++.|++.+...  ..+....++.|+.
T Consensus       267 ~~I~~~a~I~g~~~I~~~v~i~~~a~v~a~~~~~--~~l~g~~~i~G~~  313 (320)
T d2f9ca1         267 VLIEGHACIQGEILIERQVEISGRAAVIAFDDNT--IHLRGPKVINGED  313 (320)
T ss_dssp             EEECSSCEEESSEEECSEEEECSSCEEECCSSCC--EEECSSEEECSSC
T ss_pred             eEECCCcEEcccCEEeCCCEECCCeEEEEecCCe--EEccCCcEEcCcc
Confidence            5566666666666666666666666666666544  6666666666553