Citrus Sinensis ID: 039845


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
ILNPYLEKISEKVGISTRINRSDSGYTRGLIEKVGFLMGRDVASLVLEACIRLRIWELVETLIVHGLLLCILKYFLCPLQDAYGSMGSVRMEWESQALLAIEKASDENPSRKQLCLAKEASILLMVAHDGFSISELCLRYLLASSNIDEVMLSSAISNLNGMSLIRYLGKWLKKFETFPQIAIDNPSTLYPCNCIPLPLFSSSLDFVAVL
cccHHHHHHcHHHcEEEEEcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
ccHHHHHHHHHHcEEEEEcccccccHHHHHHHHHccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccHEEHHHHHHHccHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccHHHcccccc
ILNPYLEKISekvgistrinrsdsgytrglIEKVGFLMGRDVASLVLEACIRLRIWELVETLIVHGLLLCILKYFlcplqdaygsmgsvrMEWESQALLAIEKasdenpsrkQLCLAKEASILLMVAHDGFSISELCLRYLLASSNIDEVMLSSAISNLNGMSLIRYLGKWLKKFetfpqiaidnpstlypcnciplplfsssldfvavl
ILNPYLEKIsekvgistrinrsdsgytrGLIEKVGFLMGRDVASLVLEACIRLRIWELVETLIVHGLLLCILKYFLCPLQDAYGSMGSVRMEWESQALLAIEKASDENPSRKQLCLAKEASILLMVAHDGFSISELCLRYLLASSNIDEVMLSSAISNLNGMSLIRYLGKWLKKFETFPQIAIDNPSTLYPCNCIPLPLFSSSLDFVAVL
ILNPYLEKISEKVGISTRINRSDSGYTRGLIEKVGFLMGRDVASLVLEACIRLRIWELVETLIVHGLLLCILKYFLCPLQDAYGSMGSVRMEWESQALLAIEKASDENPSRKQLCLAKEASILLMVAHDGFSISELCLRYLLASSNIDEVMLSSAISNLNGMSLIRYLGKWLKKFETFPQIAIDNPSTLYPCNCIPLPLFSSSLDFVAVL
**************ISTRINRSDSGYTRGLIEKVGFLMGRDVASLVLEACIRLRIWELVETLIVHGLLLCILKYFLCPLQDAYGSMGSVRMEWESQALLAI***********QLCLAKEASILLMVAHDGFSISELCLRYLLASSNIDEVMLSSAISNLNGMSLIRYLGKWLKKFETFPQIAIDNPSTLYPCNCIPLPLFSSSLDFVA**
**NPY**KISEKVGISTRINRSDSGYTRGLIEKVGFLMGRDVASLVLEACIRLRIWELVETLIVHGLLLCILKYFLCPLQDAYGSMGSVRMEWESQAL*******************KEASILLMVAHDGFSISELCLRYLLASSNIDEVMLSSAISNLNGMSLIRYLGKWLKKFETFPQI****************PLFSSSLDFVAVL
ILNPYLEKISEKVGISTRINRSDSGYTRGLIEKVGFLMGRDVASLVLEACIRLRIWELVETLIVHGLLLCILKYFLCPLQDAYGSMGSVRMEWESQALLAIEKASDENPSRKQLCLAKEASILLMVAHDGFSISELCLRYLLASSNIDEVMLSSAISNLNGMSLIRYLGKWLKKFETFPQIAIDNPSTLYPCNCIPLPLFSSSLDFVAVL
ILNPYLEKISEKVGISTRINRSDSGYTRGLIEKVGFLMGRDVASLVLEACIRLRIWELVETLIVHGLLLCILKYFLCPLQDAYGSMGSVRMEWESQALLAIEKASDENPSRKQLCLAKEASILLMVAHDGFSISELCLRYLLASSNIDEVMLSSAISNLNGMSLIRYLGKWLKKFETFPQIAIDNPSTLYPCNCIPLPLFSSSLDFVAVL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ILNPYLEKISEKVGISTRINRSDSGYTRGLIEKVGFLMGRDVASLVLEACIRLRIWELVETLIVHGLLLCILKYFLCPLQDAYGSMGSVRMEWESQALLAIEKASDENPSRKQLCLAKEASILLMVAHDGFSISELCLRYLLASSNIDEVMLSSAISNLNGMSLIRYLGKWLKKFETFPQIAIDNPSTLYPCNCIPLPLFSSSLDFVAVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query210
255540939 395 conserved hypothetical protein [Ricinus 0.857 0.455 0.589 6e-63
224124154 397 predicted protein [Populus trichocarpa] 0.857 0.453 0.575 2e-56
449520752 393 PREDICTED: uncharacterized protein LOC10 0.928 0.496 0.495 4e-51
449448372 393 PREDICTED: uncharacterized protein LOC10 0.928 0.496 0.491 2e-50
225456693 395 PREDICTED: uncharacterized protein LOC10 0.857 0.455 0.520 1e-49
255635341 399 unknown [Glycine max] 0.852 0.448 0.513 1e-49
147842467 442 hypothetical protein VITISV_034573 [Viti 0.857 0.407 0.520 2e-49
356512445 399 PREDICTED: uncharacterized protein LOC10 0.852 0.448 0.509 3e-49
18394662 399 uncharacterized protein [Arabidopsis tha 0.852 0.448 0.513 8e-48
356562814 394 PREDICTED: uncharacterized protein LOC10 0.847 0.451 0.5 3e-47
>gi|255540939|ref|XP_002511534.1| conserved hypothetical protein [Ricinus communis] gi|223550649|gb|EEF52136.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 129/219 (58%), Positives = 154/219 (70%), Gaps = 39/219 (17%)

Query: 1   ILNPYLEKISEKVGISTRINRSDSGYTRGLIEKVGFLMGRDVASLVLEACIRLRIWELVE 60
           ILNP+LEK+ EK+GIS  ++ SD+GYT+ LIEK+GFLMGRDV  LVLEAC+ L IW+LVE
Sbjct: 91  ILNPFLEKMGEKIGISVGVSSSDNGYTQVLIEKIGFLMGRDVTGLVLEACLSLEIWDLVE 150

Query: 61  TLIVHGL------------------------------------LLCILKYFLCPLQDAYG 84
           TLI+ GL                                    LLCILKYFLCP ++AY 
Sbjct: 151 TLIIKGLVDYSCYSNLVKNLVANKRSDLLCLSIKHAPDLGLSELLCILKYFLCPSKEAYS 210

Query: 85  SMGSVRMEWESQALLAIEKASDENPSRKQLCLAKEASILLMVAHDGFSISELCLRYLLAS 144
           +M +VR EWESQALLAIEK  ++N   K+L +AKEA+ILLM+AHDGFS SELCL YLLAS
Sbjct: 211 AMANVRKEWESQALLAIEKVRNKNLPDKKLRVAKEAAILLMLAHDGFSTSELCLHYLLAS 270

Query: 145 SNIDEVMLSSAISNLNG---MSLIRYLGKWLKKFETFPQ 180
            NIDEV+LSS+I  LNG   MS I+YLGKWLKK+ETFPQ
Sbjct: 271 VNIDEVILSSSIGKLNGKEMMSFIKYLGKWLKKYETFPQ 309




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124154|ref|XP_002330118.1| predicted protein [Populus trichocarpa] gi|222871252|gb|EEF08383.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449520752|ref|XP_004167397.1| PREDICTED: uncharacterized protein LOC101225330 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449448372|ref|XP_004141940.1| PREDICTED: uncharacterized protein LOC101222166 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225456693|ref|XP_002273275.1| PREDICTED: uncharacterized protein LOC100257068 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255635341|gb|ACU18024.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|147842467|emb|CAN63140.1| hypothetical protein VITISV_034573 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356512445|ref|XP_003524929.1| PREDICTED: uncharacterized protein LOC100817544 [Glycine max] Back     alignment and taxonomy information
>gi|18394662|ref|NP_564065.1| uncharacterized protein [Arabidopsis thaliana] gi|6730701|gb|AAF27096.1|AC011809_5 Unknown protein [Arabidopsis thaliana] gi|15810347|gb|AAL07061.1| unknown protein [Arabidopsis thaliana] gi|20465593|gb|AAM20279.1| unknown protein [Arabidopsis thaliana] gi|332191650|gb|AEE29771.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356562814|ref|XP_003549663.1| PREDICTED: uncharacterized protein LOC100806052 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query210
TAIR|locus:2034969399 AT1G18850 "AT1G18850" [Arabido 0.533 0.280 0.663 1.6e-49
TAIR|locus:2034969 AT1G18850 "AT1G18850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 373 (136.4 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 77/116 (66%), Positives = 90/116 (77%)

Query:    68 LLCILKYFLCPLQDAYGSMGSVRMEWESQALLAIEKASDENPSRKQLCLAKEASILLMVA 127
             LL ILKYFLCP ++A  +M  VR EWESQA+LAIEK S+   S+K   +A+EASILLMVA
Sbjct:   201 LLSILKYFLCPSKEAISTMAKVREEWESQAMLAIEKVSNTELSKKSK-VAEEASILLMVA 259

Query:   128 HDGFSISELCLRYLLASSNIDEVMLSSAISNLNGM---SLIRYLGKWLKKFETFPQ 180
             HDGFS SELCL YLLAS N+DEVM +SA+S LNG    S IRYL KW+KK+E FPQ
Sbjct:   260 HDGFSTSELCLHYLLASRNVDEVMFASAVSKLNGNEMGSFIRYLSKWMKKYEMFPQ 315


GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005730 "nucleolus" evidence=IDA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006626 "protein targeting to mitochondrion" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.01290009
hypothetical protein (397 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00