Citrus Sinensis ID: 039873

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------71
Protein Sequence
MPARKPPTSPQAATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccEEHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHcccccccEEEHHHHHHHHHccccccHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHccccccccEEcHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHccccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHccccccccEEEEEEccEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHcccEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccEEcccHHHHHHHHHHHcccEEEEEccccccccccccEcccccc
Coil and Loop (DISEMBL)
mparkpptspqaatrcapflfkqnrappsvEDTLKLLKHsadskdlklgKVIHAHLIITtessrnenVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNmvsgdnlepnEYIFSIVLSscsrsgrgaegrqchgyvfKSGLVFCKYVRNALVELYTKCLDVEMAKRLLdllpgydvfeyNSVLnglienecfrGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMlksdiepdvfINSAMISMYgkcgkfsnakKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCgmeyeairpneFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICgyshhglgrEALTLFQNMLaaeerpnhvTFVGVLSacghlglvQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFmrstpvkwDVVAWHTLLNASRVHQNYGFGRRIAEYILhmdpndvgTYILLSNMYAKEKRWDGVSKIRKLMKVRKvkkepgsswteirNTTHVFisgdsnhpessQIYEKVRELSAKikplgyvpdVAAVLHDVEDEQKEDYLNHHSEKLAIAYALmetpptapilviknlrmcddCHSAVKLISKLtkrdiivrdtnrfhrfqdgccsctdyw
Flexible Loop (DISEMBL)
mparkpptspqaatrcapflfkqnrappsVEDTLKLLKHSadskdlklgKVIHAHLiittessrnenVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMyakekrwdgvskirklmkvrkvkkepgsswteirntthvfisgdsnhpESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKliskltkrdiivrdtnrfhrfqdgccsctdyw
Low Complexity Region (SEG)
MPARKPPTSPQAATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW
Disordered region (IsUnstruct)
********************************************DLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKV*******WTEIRNTTHVFI***********IYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDY*
Disordered Region (DISOPRED)
**ARKPPTSPQAATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW
Disordered Region (DISEMBL)
*************TRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSC*********RQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK***********WTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW
Disordered Region (DISPRO)
MPARKPPTSPQAATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPARKPPTSPQAATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	709	2.2.26 [Sep-21-2011]
Q9FK93	710	Pentatricopeptide repeat-	yes	no	0.980	0.978	0.517	0.0
Q9SVP7	1064	Pentatricopeptide repeat-	no	no	0.937	0.625	0.380	1e-140
Q9ZUW3	868	Pentatricopeptide repeat-	no	no	0.921	0.752	0.391	1e-140
Q9SHZ8	786	Pentatricopeptide repeat-	no	no	0.898	0.810	0.370	1e-134
Q9SMZ2	990	Pentatricopeptide repeat-	no	no	0.943	0.675	0.361	1e-134
Q9FIB2	995	Putative pentatricopeptid	no	no	0.929	0.662	0.373	1e-133
Q3E6Q1	809	Pentatricopeptide repeat-	no	no	0.954	0.836	0.368	1e-131
Q9SY02	781	Pentatricopeptide repeat-	no	no	0.875	0.795	0.388	1e-129
Q9LTV8	694	Pentatricopeptide repeat-	no	no	0.921	0.940	0.344	1e-127
Q9S7F4	825	Putative pentatricopeptid	no	no	0.908	0.780	0.348	1e-127

>sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/695 (51%), Positives = 496/695 (71%)

Query: 15  RCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSL 74
           + A  + K  + P  ++   +LLK  A+S  L++G+ IHAHLI+T +SSR E+    NSL
Sbjct: 16  KLASLVPKSKKTPFPIDRLNELLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSL 75

Query: 75  VNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPN 134
           +NLY KC +   AR+LFD M +RNVVS+ ++M  Y ++GF  E LKLFK+M       PN
Sbjct: 76  INLYVKCRETVRARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPN 135

Query: 135 EYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLD 194
           E++ ++V  SCS SGR  EG+Q HG   K GL+  ++VRN LV +Y+ C     A R+LD
Sbjct: 136 EFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLD 195

Query: 195 LLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKL 254
            LP  D+  ++S L+G +E   F+ G++VL K  +    W+++TY+++  L ++L+DL L
Sbjct: 196 DLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNL 255

Query: 255 GLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQ 314
            LQVHS+M++     +V    A+I+MYGKCGK   A++VF+    +N+ L T ++ A FQ
Sbjct: 256 ALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQ 315

Query: 315 NEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIV 374
           ++ FEEALNLF  M+ + + PNE+TFA++LNS A LS L+ GDLLH  + KSG++ H++V
Sbjct: 316 DKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMV 375

Query: 375 GNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEE 434
           GNAL+NMYAK G+IE A K FS M +RDI+TWN MI G SHHGLGREAL  F  M+   E
Sbjct: 376 GNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGE 435

Query: 435 RPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE 494
            PN +TF+GVL AC H+G V++G +Y N LMK+  + P ++HYTCIVGLLSKAG+  +AE
Sbjct: 436 IPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGMFKDAE 495

Query: 495 KFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK 554
            FMR+ P++WDVVAW TLLNA  V +NY  G+++AEY +   PND G Y+LLSN++AK +
Sbjct: 496 DFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSR 555

Query: 555 RWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIK 614
            W+GV+K+R LM  R VKKEPG SW  IRN THVF++ D+ HPE + IY KV+E+ +KIK
Sbjct: 556 EWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEVMSKIK 615

Query: 615 PLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHS 674
           PLGY PDVA   HDV++EQ+ED L++HSEKLA+AY L++TP  +P+ V KN+R+CDDCHS
Sbjct: 616 PLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHS 675

Query: 675 AVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW 709
           A+KLISK++KR I++RD+NRFH F DG CSC DYW
Sbjct: 676 AIKLISKISKRYIVIRDSNRFHHFLDGQCSCCDYW 710

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2

 Score =  500 bits (1288), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 255/670 (38%), Positives = 390/670 (58%), Gaps = 5/670 (0%)

Query: 40   SADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNV 99
            SAD    + G+ +HA+   TT+     N  +  +L+NLYAKC  I  A   F      NV
Sbjct: 400  SADGTLFR-GQQLHAY---TTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENV 455

Query: 100  VSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHG 159
            V ++ ++  Y     L  + ++F+ M   + + PN+Y +  +L +C R G    G Q H 
Sbjct: 456  VLWNVMLVAYGLLDDLRNSFRIFRQM-QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHS 514

Query: 160  YVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRG 219
             + K+      YV + L+++Y K   ++ A  +L    G DV  + +++ G  +      
Sbjct: 515  QIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDK 574

Query: 220  GVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMIS 279
             +    +M+   +R D V   NA    A L+ LK G Q+H+Q   S    D+   +A+++
Sbjct: 575  ALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVT 634

Query: 280  MYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFT 339
            +Y +CGK   +   FE  E  + + W A+V+   Q+   EEAL +F  M  E I  N FT
Sbjct: 635  LYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFT 694

Query: 340  FAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR 399
            F   + +A+  + ++ G  +HA I K+G+     V NALI+MYAK G+I  A K F ++ 
Sbjct: 695  FGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVS 754

Query: 400  YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFY 459
             ++ ++WNA+I  YS HG G EAL  F  M+ +  RPNHVT VGVLSAC H+GLV +G  
Sbjct: 755  TKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIA 814

Query: 460  YLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVH 519
            Y   +  + G+ P  EHY C+V +L++AGLL  A++F++  P+K D + W TLL+A  VH
Sbjct: 815  YFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVH 874

Query: 520  QNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSW 579
            +N   G   A ++L ++P D  TY+LLSN+YA  K+WD     R+ MK + VKKEPG SW
Sbjct: 875  KNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSW 934

Query: 580  TEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLN 639
             E++N+ H F  GD NHP + +I+E  ++L+ +   +GYV D  ++L++++ EQK+  + 
Sbjct: 935  IEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIF 994

Query: 640  HHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQ 699
             HSEKLAI++ L+  P T PI V+KNLR+C+DCH+ +K +SK++ R+IIVRD  RFH F+
Sbjct: 995  IHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFE 1054

Query: 700  DGCCSCTDYW 709
             G CSC DYW
Sbjct: 1055 GGACSCKDYW 1064

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1

 Score =  500 bits (1287), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 261/666 (39%), Positives = 401/666 (60%), Gaps = 13/666 (1%)

Query: 49  GKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTW 108
           G+ +  H ++  ++  ++ + ++NSL+NLY KC  +  AR LFD    ++VV+++S+++ 
Sbjct: 211 GRGLQVHTVVV-KNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISG 269

Query: 109 YLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVF 168
           Y  NG  LE L +F +M   + +  +E  F+ V+  C+         Q H  V K G +F
Sbjct: 270 YAANGLDLEALGMFYSM-RLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLF 328

Query: 169 CKYVRNALVELYTKCLDVEMAKRLLDLLPGY-DVFEYNSVLNGLIENECFRGGVEVLGKM 227
            + +R AL+  Y+KC  +  A RL   +    +V  + ++++G ++N+     V++  +M
Sbjct: 329 DQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEM 388

Query: 228 VSGSVRWDSVTYVNAFGLSASLKDLKL--GLQVHSQMLKSDIEPDVFINSAMISMYGKCG 285
               VR +  TY      S  L  L +    +VH+Q++K++ E    + +A++  Y K G
Sbjct: 389 KRKGVRPNEFTY------SVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLG 442

Query: 286 KFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLN 345
           K   A KVF G++ +++V W+AM+A   Q    E A+ +F  +    I+PNEFTF+ +LN
Sbjct: 443 KVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILN 502

Query: 346 SAAGLSA-LRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDII 404
             A  +A +  G   H    KS     L V +AL+ MYAK GNIE+A +VF   R +D++
Sbjct: 503 VCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLV 562

Query: 405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHL 464
           +WN+MI GY+ HG   +AL +F+ M   + + + VTF+GV +AC H GLV+EG  Y + +
Sbjct: 563 SWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIM 622

Query: 465 MKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGF 524
           ++   I P  EH +C+V L S+AG L++A K + + P       W T+L A RVH+    
Sbjct: 623 VRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTEL 682

Query: 525 GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRN 584
           GR  AE I+ M P D   Y+LLSNMYA+   W   +K+RKLM  R VKKEPG SW E++N
Sbjct: 683 GRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKN 742

Query: 585 TTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEK 644
            T+ F++GD +HP   QIY K+ +LS ++K LGY PD + VL D++DE KE  L  HSE+
Sbjct: 743 KTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSER 802

Query: 645 LAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRF-QDGCC 703
           LAIA+ L+ TP  +P+L+IKNLR+C DCH  +KLI+K+ +R+I+VRD+NRFH F  DG C
Sbjct: 803 LAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVC 862

Query: 704 SCTDYW 709
           SC D+W
Sbjct: 863 SCGDFW 868

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1

 Score =  479 bits (1232), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 261/704 (37%), Positives = 400/704 (56%), Gaps = 67/704 (9%)

Query: 72  NSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNL 131
           N++++ Y+K   +    + FD + QR+ VS+++++  Y + G   + +++  +MV  + +
Sbjct: 84  NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVK-EGI 142

Query: 132 EPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKR 191
           EP ++  + VL+S + +     G++ H ++ K GL     V N+L+ +Y KC D  MAK 
Sbjct: 143 EPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKF 202

Query: 192 LLDLLPGYDVFEYNSVL---------------------------NGLIENECFRG----G 220
           + D +   D+  +N+++                           N +I     RG     
Sbjct: 203 VFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRA 262

Query: 221 VEVLGKMVSGSV-RWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMIS 279
           +++  KM+  S+   D  T  +     A+L+ L +G Q+HS ++ +  +    + +A+IS
Sbjct: 263 LDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALIS 322

Query: 280 MYGKCG---------------------------------KFSNAKKVFEGLETRNVVLWT 306
           MY +CG                                   + AK +F  L+ R+VV WT
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWT 382

Query: 307 AMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKS 366
           AM+    Q+  + EA+NLF  M     RPN +T A ML+ A+ L++L HG  +H    KS
Sbjct: 383 AMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKS 442

Query: 367 GFKEHLIVGNALINMYAKGGNIEAANKVFSDMR-YRDIITWNAMICGYSHHGLGREALTL 425
           G    + V NALI MYAK GNI +A++ F  +R  RD ++W +MI   + HG   EAL L
Sbjct: 443 GEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALEL 502

Query: 426 FQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLS 485
           F+ ML    RP+H+T+VGV SAC H GLV +G  Y + +     I+P L HY C+V L  
Sbjct: 503 FETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFG 562

Query: 486 KAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYIL 545
           +AGLL EA++F+   P++ DVV W +LL+A RVH+N   G+  AE +L ++P + G Y  
Sbjct: 563 RAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSA 622

Query: 546 LSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEK 605
           L+N+Y+   +W+  +KIRK MK  +VKKE G SW E+++  HVF   D  HPE ++IY  
Sbjct: 623 LANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMT 682

Query: 606 VRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKN 665
           ++++  +IK +GYVPD A+VLHD+E+E KE  L HHSEKLAIA+ L+ TP    + ++KN
Sbjct: 683 MKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKN 742

Query: 666 LRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW 709
           LR+C+DCH+A+K ISKL  R+IIVRDT RFH F+DG CSC DYW
Sbjct: 743 LRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1

 Score =  478 bits (1229), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 244/675 (36%), Positives = 394/675 (58%), Gaps = 6/675 (0%)

Query: 36  LLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMR 95
           +L  +     L LG+ +H    +  +   +  + ++NSL+N+Y K  +   AR +FDNM 
Sbjct: 321 MLATAVKVDSLALGQQVHC---MALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMS 377

Query: 96  QRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAE-G 154
           +R+++S++S++     NG  +E + LF  ++    L+P++Y  + VL + S    G    
Sbjct: 378 ERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRC-GLKPDQYTMTSVLKAASSLPEGLSLS 436

Query: 155 RQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIEN 214
           +Q H +  K   V   +V  AL++ Y++   ++ A+ L +    +D+  +N+++ G  ++
Sbjct: 437 KQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQS 495

Query: 215 ECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFIN 274
                 +++   M     R D  T    F     L  +  G QVH+  +KS  + D++++
Sbjct: 496 HDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS 555

Query: 275 SAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIR 334
           S ++ MY KCG  S A+  F+ +   + V WT M++ C +N   E A ++F  M    + 
Sbjct: 556 SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVL 615

Query: 335 PNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKV 394
           P+EFT A +  +++ L+AL  G  +HA+  K        VG +L++MYAK G+I+ A  +
Sbjct: 616 PDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCL 675

Query: 395 FSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLV 454
           F  +   +I  WNAM+ G + HG G+E L LF+ M +   +P+ VTF+GVLSAC H GLV
Sbjct: 676 FKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLV 735

Query: 455 QEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLN 514
            E + ++  +    GI P +EHY+C+   L +AGL+ +AE  + S  ++     + TLL 
Sbjct: 736 SEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLA 795

Query: 515 ASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKE 574
           A RV  +   G+R+A  +L ++P D   Y+LLSNMYA   +WD +   R +MK  KVKK+
Sbjct: 796 ACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKD 855

Query: 575 PGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQK 634
           PG SW E++N  H+F+  D ++ ++  IY KV+++   IK  GYVP+    L DVE+E+K
Sbjct: 856 PGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEK 915

Query: 635 EDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNR 694
           E  L +HSEKLA+A+ L+ TPP+ PI VIKNLR+C DCH+A+K I+K+  R+I++RD NR
Sbjct: 916 ERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANR 975

Query: 695 FHRFQDGCCSCTDYW 709
           FHRF+DG CSC DYW
Sbjct: 976 FHRFKDGICSCGDYW 990

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1

 Score =  475 bits (1222), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/682 (37%), Positives = 403/682 (59%), Gaps = 23/682 (3%)

Query: 41  ADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVV 100
           A+   LK G+ +H H+I T     +  V + N LVN+YAKC  I+ AR++F  M  ++ V
Sbjct: 324 AEEVGLKKGREVHGHVITT--GLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSV 381

Query: 101 SYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGY 160
           S++S++T    NG  +E ++ +K+M   D L P  +     LSSC+       G+Q HG 
Sbjct: 382 SWNSMITGLDQNGCFIEAVERYKSMRRHDIL-PGSFTLISSLSSCASLKWAKLGQQIHGE 440

Query: 161 VFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENE----- 215
             K G+     V NAL+ LY +   +   +++   +P +D   +NS++  L  +E     
Sbjct: 441 SLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPE 500

Query: 216 ---CFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVF 272
              CF        K+       + +T+ +     +SL   +LG Q+H   LK++I  +  
Sbjct: 501 AVVCFLNAQRAGQKL-------NRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEAT 553

Query: 273 INSAMISMYGKCGKFSNAKKVFEGL-ETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYE 331
             +A+I+ YGKCG+    +K+F  + E R+ V W +M++    NE   +AL+L   M   
Sbjct: 554 TENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQT 613

Query: 332 AIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAA 391
             R + F +A +L++ A ++ L  G  +HA   ++  +  ++VG+AL++MY+K G ++ A
Sbjct: 614 GQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYA 673

Query: 392 NKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNM-LAAEERPNHVTFVGVLSACGH 450
            + F+ M  R+  +WN+MI GY+ HG G EAL LF+ M L  +  P+HVTFVGVLSAC H
Sbjct: 674 LRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSH 733

Query: 451 LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWH 510
            GL++EGF +   +    G+ P +EH++C+  +L +AG LD+ E F+   P+K +V+ W 
Sbjct: 734 AGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWR 793

Query: 511 TLLNAS-RVH-QNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568
           T+L A  R + +    G++ AE +  ++P +   Y+LL NMYA   RW+ + K RK MK 
Sbjct: 794 TVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKD 853

Query: 569 RKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHD 628
             VKKE G SW  +++  H+F++GD +HP++  IY+K++EL+ K++  GYVP     L+D
Sbjct: 854 ADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYD 913

Query: 629 VEDEQKEDYLNHHSEKLAIAYAL-METPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDI 687
           +E E KE+ L++HSEKLA+A+ L  +   T PI ++KNLR+C DCHSA K ISK+  R I
Sbjct: 914 LEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQI 973

Query: 688 IVRDTNRFHRFQDGCCSCTDYW 709
           I+RD+NRFH FQDG CSC+D+W
Sbjct: 974 ILRDSNRFHHFQDGACSCSDFW 995

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1

 Score =  469 bits (1206), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/682 (36%), Positives = 393/682 (57%), Gaps = 5/682 (0%)

Query: 28  PSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIA 87
           P V +   LLK   D  +L++GK IH  L+   +S  + ++     L N+YAKC Q++ A
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLV---KSGFSLDLFAMTGLENMYAKCRQVNEA 189

Query: 88  RQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSR 147
           R++FD M +R++VS+++++  Y  NG     L++ K+M   +NL+P+      VL + S 
Sbjct: 190 RKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCE-ENLKPSFITIVSVLPAVSA 248

Query: 148 SGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSV 207
               + G++ HGY  +SG      +  ALV++Y KC  +E A++L D +   +V  +NS+
Sbjct: 249 LRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSM 308

Query: 208 LNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDI 267
           ++  ++NE  +  + +  KM+   V+   V+ + A    A L DL+ G  +H   ++  +
Sbjct: 309 IDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGL 368

Query: 268 EPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCG 327
           + +V + +++ISMY KC +   A  +F  L++R +V W AM+    QN    +ALN F  
Sbjct: 369 DRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQ 428

Query: 328 MEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGN 387
           M    ++P+ FT+  ++ + A LS   H   +H  + +S   +++ V  AL++MYAK G 
Sbjct: 429 MRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGA 488

Query: 388 IEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSA 447
           I  A  +F  M  R + TWNAMI GY  HG G+ AL LF+ M     +PN VTF+ V+SA
Sbjct: 489 IMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISA 548

Query: 448 CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVV 507
           C H GLV+ G      + +   I   ++HY  +V LL +AG L+EA  F+   PVK  V 
Sbjct: 549 CSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN 608

Query: 508 AWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK 567
            +  +L A ++H+N  F  + AE +  ++P+D G ++LL+N+Y     W+ V ++R  M 
Sbjct: 609 VYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSML 668

Query: 568 VRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLH 627
            + ++K PG S  EI+N  H F SG + HP+S +IY  + +L   IK  GYVPD   VL 
Sbjct: 669 RQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL- 727

Query: 628 DVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDI 687
            VE++ KE  L+ HSEKLAI++ L+ T     I V KNLR+C DCH+A K IS +T R+I
Sbjct: 728 GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREI 787

Query: 688 IVRDTNRFHRFQDGCCSCTDYW 709
           +VRD  RFH F++G CSC DYW
Sbjct: 788 VVRDMQRFHHFKNGACSCGDYW 809

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1

 Score =  462 bits (1188), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/648 (38%), Positives = 374/648 (57%), Gaps = 27/648 (4%)

Query: 67  NVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMV 126
           +V   N++++ YA+   +  AR +FD M ++N VS+++L++ Y+ N  + E   LFK   
Sbjct: 156 DVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFK--- 212

Query: 127 SGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDV 186
           S +N     +  + +L    +  +  E RQ     F S  V      N ++  Y +   +
Sbjct: 213 SRENWALVSW--NCLLGGFVKKKKIVEARQ----FFDSMNVRDVVSWNTIITGYAQSGKI 266

Query: 187 EMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVS-GSVRWDSVTYVNAFGL 245
           + A++L D  P  DVF + ++++G I+N       E+  KM     V W+++       L
Sbjct: 267 DEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAM-------L 319

Query: 246 SASLKDLKLGLQVHSQMLKS--DIEP--DVFINSAMISMYGKCGKFSNAKKVFEGLETRN 301
           +  ++  ++      +M K   D+ P  +V   + MI+ Y +CGK S AK +F+ +  R+
Sbjct: 320 AGYVQGERM------EMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRD 373

Query: 302 VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHA 361
            V W AM+A   Q+ +  EAL LF  ME E  R N  +F+  L++ A + AL  G  LH 
Sbjct: 374 PVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHG 433

Query: 362 HIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGRE 421
            + K G++    VGNAL+ MY K G+IE AN +F +M  +DI++WN MI GYS HG G  
Sbjct: 434 RLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEV 493

Query: 422 ALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIV 481
           AL  F++M     +P+  T V VLSAC H GLV +G  Y   + +  G++P  +HY C+V
Sbjct: 494 ALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMV 553

Query: 482 GLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG 541
            LL +AGLL++A   M++ P + D   W TLL ASRVH N       A+ I  M+P + G
Sbjct: 554 DLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSG 613

Query: 542 TYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQ 601
            Y+LLSN+YA   RW  V K+R  M+ + VKK PG SW EI+N TH F  GD  HPE  +
Sbjct: 614 MYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDE 673

Query: 602 IYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPIL 661
           I+  + EL  ++K  GYV   + VLHDVE+E+KE  + +HSE+LA+AY +M      PI 
Sbjct: 674 IFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIR 733

Query: 662 VIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW 709
           VIKNLR+C+DCH+A+K ++++T R II+RD NRFH F+DG CSC DYW
Sbjct: 734 VIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1

 Score =  455 bits (1171), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/664 (34%), Positives = 387/664 (58%), Gaps = 11/664 (1%)

Query: 50  KVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWY 109
           K IHA L++        +  L   L++  +    I+ ARQ+FD++ +  +  +++++  Y
Sbjct: 38  KQIHARLLVL---GLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGY 94

Query: 110 LHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFC 169
             N    + L ++ NM     + P+ + F  +L +CS       GR  H  VF+ G    
Sbjct: 95  SRNNHFQDALLMYSNMQLA-RVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDAD 153

Query: 170 KYVRNALVELYTKCLDVEMAKRLLD--LLPGYDVFEYNSVLNGLIENECFRGGVEVLGKM 227
            +V+N L+ LY KC  +  A+ + +   LP   +  + ++++   +N      +E+  +M
Sbjct: 154 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQM 213

Query: 228 VSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKS--DIEPDVFINSAMISMYGKCG 285
               V+ D V  V+       L+DLK G  +H+ ++K   +IEPD+ I  ++ +MY KCG
Sbjct: 214 RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI--SLNTMYAKCG 271

Query: 286 KFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLN 345
           + + AK +F+ +++ N++LW AM++   +N Y  EA+++F  M  + +RP+  +    ++
Sbjct: 272 QVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS 331

Query: 346 SAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIIT 405
           + A + +L     ++ ++ +S +++ + + +ALI+M+AK G++E A  VF     RD++ 
Sbjct: 332 ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV 391

Query: 406 WNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLM 465
           W+AMI GY  HG  REA++L++ M      PN VTF+G+L AC H G+V+EG+++ N  M
Sbjct: 392 WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNR-M 450

Query: 466 KQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFG 525
               I P  +HY C++ LL +AG LD+A + ++  PV+  V  W  LL+A + H++   G
Sbjct: 451 ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510

Query: 526 RRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNT 585
              A+ +  +DP++ G Y+ LSN+YA  + WD V+++R  MK + + K+ G SW E+R  
Sbjct: 511 EYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGR 570

Query: 586 THVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKL 645
              F  GD +HP   +I  +V  + +++K  G+V +  A LHD+ DE+ E+ L  HSE++
Sbjct: 571 LEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERI 630

Query: 646 AIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSC 705
           AIAY L+ TP   P+ + KNLR C +CH+A KLISKL  R+I+VRDTNRFH F+DG CSC
Sbjct: 631 AIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSC 690

Query: 706 TDYW 709
            DYW
Sbjct: 691 GDYW 694

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1

 Score =  455 bits (1170), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/646 (34%), Positives = 372/646 (57%), Gaps = 2/646 (0%)

Query: 65  NENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKN 124
           N  + ++N L+  Y +  ++ +A  LF+ + +++ V++++L+T Y  +G   E++ LF  
Sbjct: 181 NPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLK 240

Query: 125 MVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCL 184
           M    + +P+++ FS VL +       A G+Q H     +G      V N +++ Y+K  
Sbjct: 241 MRQSGH-QPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHD 299

Query: 185 DVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFG 244
            V   + L D +P  D   YN V++   + + +   +    +M        +  +     
Sbjct: 300 RVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLS 359

Query: 245 LSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVL 304
           ++A+L  L++G Q+H Q L +  +  + + ++++ MY KC  F  A+ +F+ L  R  V 
Sbjct: 360 IAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVS 419

Query: 305 WTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIE 364
           WTA+++   Q       L LF  M    +R ++ TFA +L ++A  ++L  G  LHA I 
Sbjct: 420 WTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFII 479

Query: 365 KSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALT 424
           +SG  E++  G+ L++MYAK G+I+ A +VF +M  R+ ++WNA+I  ++ +G G  A+ 
Sbjct: 480 RSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIG 539

Query: 425 LFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL 484
            F  M+ +  +P+ V+ +GVL+AC H G V++G  Y   +    GI P  +HY C++ LL
Sbjct: 540 AFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLL 599

Query: 485 SKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDP-NDVGTY 543
            + G   EAEK M   P + D + W ++LNA R+H+N     R AE +  M+   D   Y
Sbjct: 600 GRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAY 659

Query: 544 ILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIY 603
           + +SN+YA    W+ V  ++K M+ R +KK P  SW E+ +  HVF S D  HP   +I 
Sbjct: 660 VSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIV 719

Query: 604 EKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVI 663
            K+ EL+A+I+  GY PD ++V+ DV+++ K + L +HSE+LA+A+AL+ TP   PI+V+
Sbjct: 720 RKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVM 779

Query: 664 KNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW 709
           KNLR C DCH+A+KLISK+ KR+I VRDT+RFH F +G CSC DYW
Sbjct: 780 KNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	709
224141409	707	predicted protein [Populus trichocarpa]	0.978	0.981	0.659	0.0
225442928	703	PREDICTED: pentatricopeptide repeat-cont	0.990	0.998	0.652	0.0
356550971	703	PREDICTED: pentatricopeptide repeat-cont	0.963	0.971	0.618	0.0
356529924	694	PREDICTED: pentatricopeptide repeat-cont	0.967	0.988	0.625	0.0
449445401	697	PREDICTED: pentatricopeptide repeat-cont	0.976	0.992	0.607	0.0
357501931	700	Pentatricopeptide repeat protein [Medica	0.942	0.954	0.606	0.0
297801640	710	EMB2744 [Arabidopsis lyrata subsp. lyrat	0.952	0.950	0.530	0.0
15242443	710	pentatricopeptide repeat-containing prot	0.980	0.978	0.517	0.0
413946615	682	putative pentatricopeptide repeat family	0.926	0.963	0.493	0.0
357128440	682	PREDICTED: pentatricopeptide repeat-cont	0.926	0.963	0.505	0.0

>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa] gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]

 Score =  966 bits (2498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/696 (65%), Positives = 558/696 (80%), Gaps = 2/696 (0%)

Query: 15  RCAPFLFKQNRAPPSVE-DTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNS 73
           R APFL + N   PS   D +KLLK SAD+K+LK+GK IH+HLI+T+ ++ N +++  NS
Sbjct: 13  RHAPFLLRPNAVSPSSPLDLIKLLKLSADTKNLKVGKTIHSHLIVTSRATEN-SIIEVNS 71

Query: 74  LVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEP 133
           L+N YAK NQ+SIA  LFD M +RNVVS+S+LMT YL NGF L+ ++L K+M+S  N+ P
Sbjct: 72  LINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSP 131

Query: 134 NEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLL 193
           NEYI +I +SSC   GR  EGRQCHG + K+G  F  YVRNALV +Y+KC  V+ A  + 
Sbjct: 132 NEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVW 191

Query: 194 DLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLK 253
           + +P  D+  YNS+L+ L+EN   R G+EVL  MVS SV+WD VT+VNAF L ASLKDL+
Sbjct: 192 NEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLR 251

Query: 254 LGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACF 313
           LGL VH +ML SD+E D +++SA+I+MYGKCGK   A+ VF+GL++RNVVLWTA++A+CF
Sbjct: 252 LGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCF 311

Query: 314 QNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLI 373
           QN  FEEALNLF  ME E ++ NEFT+AV+LN+ AGLSA R+G LLH H EKSGFK H++
Sbjct: 312 QNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVM 371

Query: 374 VGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAE 433
           VGNALINMYAK G+IEAA KVFSDM +RDIITWNAMICG+SHHGLG++AL +FQ+MLAAE
Sbjct: 372 VGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAE 431

Query: 434 ERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEA 493
           E PN+VTF GVLSACGHLGLVQEGFYYL+HLMKQ G+ PGLEHYTCIV LLSK G L+EA
Sbjct: 432 EHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEA 491

Query: 494 EKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKE 553
             FMR+ PVKWDVVAW TLLNA  VHQNYG GR +AE++L MDPNDVGTY LLSN+YAKE
Sbjct: 492 RNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKE 551

Query: 554 KRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKI 613
           KRWDGV K+RKLM+ +K+KKEPG SW EI N TH+F S D+ HP+  Q Y+KV+EL A I
Sbjct: 552 KRWDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMI 611

Query: 614 KPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCH 673
           KPLGY PD+ AVLHDVEDEQKE YL++HSEKLAIAY L++ P  A ILVIKNLR+CDDCH
Sbjct: 612 KPLGYTPDIGAVLHDVEDEQKEYYLSYHSEKLAIAYGLLKLPSEASILVIKNLRICDDCH 671

Query: 674 SAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW 709
           SAV+LISK+T R I+VRD NRFH F+DG CSC DYW
Sbjct: 672 SAVRLISKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39680-like [Vitis vinifera]

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/703 (65%), Positives = 555/703 (78%), Gaps = 1/703 (0%)

Query: 7   PTSPQAATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNE 66
           PT    A    PFL K +     +E T++LLK SAD+K+LK GK+IHAHLIIT ++++ +
Sbjct: 2   PTLRLLAPTHKPFLLKSSTVGHPLEHTIQLLKVSADTKNLKFGKMIHAHLIITNQATK-D 60

Query: 67  NVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMV 126
           N+V  NSL+NLYAKC+QI +AR LFD MR+RNVVS+ +LM  Y HNG +LE L+LFK M+
Sbjct: 61  NIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMI 120

Query: 127 SGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDV 186
           S D + PNEYIF+ ++SSCS SG+  EG QCHGY  KSGLVF +YV+NAL+ +Y++  DV
Sbjct: 121 SVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDV 180

Query: 187 EMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLS 246
           + A  +   +PG DVF YN ++NGL+EN      +EVL +MV   + WD+VTYV AFGL 
Sbjct: 181 KGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLC 240

Query: 247 ASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWT 306
           + LKDL+LGLQVH +M ++  E D F++SA+I MYGKCG   NA+KVF  L+T+NVV WT
Sbjct: 241 SHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWT 300

Query: 307 AMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKS 366
           A++AA  QN  FEEALN F  ME + + PNE+TFAV+LNS AG+SAL HG LLH  I+KS
Sbjct: 301 AILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKS 360

Query: 367 GFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLF 426
           GF++H+IVGNALINMY+K G+IEAA+KVF +M  RD ITW+AMICG SHHGLGREAL +F
Sbjct: 361 GFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVF 420

Query: 427 QNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK 486
           Q MLAA+E P++VTFVGVLSAC HLG VQEGFYYLN LMKQ GI PG+EHYTCIVGLL K
Sbjct: 421 QEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCK 480

Query: 487 AGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL 546
           AG LDEAE FM+STPVKWDVVAW TLL+A  VHQNYG G+++AE +L MDP DVGTYILL
Sbjct: 481 AGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILL 540

Query: 547 SNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKV 606
           SNMYAK KRWDGV KIRKLM+ R VKKEPG+SW EIRN+ HVF+S    HPES+QIYEKV
Sbjct: 541 SNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKV 600

Query: 607 RELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNL 666
           +EL   I+P+GYVPD+AAV HDVEDEQK +Y+++HSEKLAIAY LM+TP  API VIKNL
Sbjct: 601 QELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNL 660

Query: 667 RMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW 709
           RMC DCHSAVKLISK+T R IIVRD NRFH F DG CSC DYW
Sbjct: 661 RMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39680-like [Glycine max]

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/684 (61%), Positives = 536/684 (78%), Gaps = 1/684 (0%)

Query: 27  PPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISI 86
           P S+++ + LLK SA +K L+ GK IHA L++  ++S++ ++   NSL+NLY+KC Q   
Sbjct: 20  PCSLKEVVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKC 79

Query: 87  ARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCS 146
           AR+LFD M QRNVVS+S+LM  YLH G +LE L LF+N+VS D+  PNEYIF+IVLS C+
Sbjct: 80  ARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCA 139

Query: 147 RSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNS 206
            SGR  EG+QCHGY+ KSGL+  +YV+NAL+ +Y++C  V+ A ++LD +PG DVF YNS
Sbjct: 140 DSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNS 199

Query: 207 VLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSD 266
           +L+ L+E+ C     +VL +MV   V WDSVTYV+  GL A ++DL+LGLQ+H+Q+LK+ 
Sbjct: 200 ILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTG 259

Query: 267 IEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFC 326
           +  DVF++S +I  YGKCG+  NA+K F+GL  RNVV WTA++ A  QN +FEE LNLF 
Sbjct: 260 LVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFT 319

Query: 327 GMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGG 386
            ME E  RPNEFTFAV+LN+ A L AL +GDLLH  I  SGFK HLIVGNALINMY+K G
Sbjct: 320 KMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSG 379

Query: 387 NIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLS 446
           NI+++  VFS+M  RD+ITWNAMICGYSHHGLG++AL +FQ+M++A E PN+VTF+GVLS
Sbjct: 380 NIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLS 439

Query: 447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP-VKWD 505
           AC HL LVQEGFYY + +MK+  + PGLEHYTC+V LL +AGLLDEAE FM++T  VKWD
Sbjct: 440 ACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWD 499

Query: 506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKL 565
           VVAW TLLNA  +H+NY  G++I E ++ MDP+DVGTY LLSNM+AK ++WDGV KIRKL
Sbjct: 500 VVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKL 559

Query: 566 MKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAV 625
           MK R +KKEPG+SW +IRN THVF+S  SNHPES+QI+EKV++L A IKPLGY PDV  V
Sbjct: 560 MKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGVV 619

Query: 626 LHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKR 685
           LHDVEDEQKE YL+HHSEKLA+AY LM+ PP  PI +IKNLRMCDDCH AVKLISK T R
Sbjct: 620 LHDVEDEQKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCHIAVKLISKATNR 679

Query: 686 DIIVRDTNRFHRFQDGCCSCTDYW 709
            IIVRD NRFH F++G C+C D+W
Sbjct: 680 LIIVRDANRFHHFREGLCTCNDHW 703

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39680-like [Glycine max]

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/689 (62%), Positives = 536/689 (77%), Gaps = 3/689 (0%)

Query: 24  NRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQ 83
           +R  PS+E+  KLLK  AD K L  GK +HA  +I  ++S + ++   NSLV+LY KC Q
Sbjct: 6   SRYLPSLEELGKLLKLCADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQ 65

Query: 84  ISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLS 143
           + +AR LFD M  RNVVS++ LM  YLH G  LE L LFKNMVS  N  PNEY+F+  LS
Sbjct: 66  LGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALS 125

Query: 144 SCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGY---D 200
           +CS  GR  EG QCHG +FK GLV  +YV++ALV +Y++C  VE+A ++LD +PG    D
Sbjct: 126 ACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVND 185

Query: 201 VFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHS 260
           +F YNSVLN L+E+      VEVL +MV   V WD VTYV   GL A ++DL+LGL+VH+
Sbjct: 186 IFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHA 245

Query: 261 QMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEE 320
           ++L+  +  D F+ S +I MYGKCG+  NA+ VF+GL+ RNVV+WTA++ A  QN YFEE
Sbjct: 246 RLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEE 305

Query: 321 ALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALIN 380
           +LNLF  M+ E   PNE+TFAV+LN+ AG++ALRHGDLLHA +EK GFK H+IV NALIN
Sbjct: 306 SLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALIN 365

Query: 381 MYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVT 440
           MY+K G+I+++  VF+DM YRDIITWNAMICGYSHHGLG++AL +FQ+M++AEE PN+VT
Sbjct: 366 MYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVT 425

Query: 441 FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST 500
           F+GVLSA  HLGLV+EGFYYLNHLM+   I PGLEHYTC+V LLS+AGLLDEAE FM++T
Sbjct: 426 FIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTT 485

Query: 501 PVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVS 560
            VKWDVVAW TLLNA  VH+NY  GRRIAE +L MDP+DVGTY LLSNMYAK +RWDGV 
Sbjct: 486 QVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVV 545

Query: 561 KIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVP 620
            IRKLM+ R +KKEPG+SW +IRN  HVF+S  SNHPES QIY+KV++L A IKPLGYVP
Sbjct: 546 TIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLLALIKPLGYVP 605

Query: 621 DVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLIS 680
           ++A+VLHDVEDEQKE YL++HSEKLA+AY LM+ P  API +IKNLRMCDDCH+AVKLIS
Sbjct: 606 NIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAPIRIIKNLRMCDDCHTAVKLIS 665

Query: 681 KLTKRDIIVRDTNRFHRFQDGCCSCTDYW 709
           K+T R IIVRD NRFH F+DG C+C D+W
Sbjct: 666 KVTNRLIIVRDANRFHHFRDGSCTCLDHW 694

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39680-like [Cucumis sativus]

 Score =  881 bits (2276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/693 (60%), Positives = 531/693 (76%), Gaps = 1/693 (0%)

Query: 17  APFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVN 76
            PFL + N      +D +KLLK +AD+K+LK G+ IHAHL IT  + R+  V   NSL+N
Sbjct: 6   TPFLSRSNFLASPHQDPIKLLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLIN 65

Query: 77  LYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEY 136
           LY KC+++SIAR+LFD+M +RNVVS+S+LM  Y+ NG  LE  +LFK MV  DN+ PNEY
Sbjct: 66  LYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEY 125

Query: 137 IFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLL 196
           + +  +SSC  S    EG+QCHGY  KSGL F +YV+NAL++LY+KC DV  A ++L  +
Sbjct: 126 VIATAISSCD-SQMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTV 184

Query: 197 PGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGL 256
           PG D+F YN V+NGL+++      V+VL  ++S  + W++ TYV  F L ASLKD+ LG 
Sbjct: 185 PGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGK 244

Query: 257 QVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNE 316
           QVH+QMLKSDI+ DV+I S++I MYGKCG   + +  F+ L++RNVV WT+++AA FQNE
Sbjct: 245 QVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNE 304

Query: 317 YFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGN 376
           +FEEALNLF  ME + I PNE+T AV+ NSAAGLSAL  GD LHA  EKSG K +++VGN
Sbjct: 305 FFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGN 364

Query: 377 ALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP 436
           ALI MY K G+I AA  VFS+M   +IITWNA+I G+SHHGLG+EAL++FQ+M+A  ERP
Sbjct: 365 ALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGERP 424

Query: 437 NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF 496
           N+VTF+GV+ AC HL LV EGFYY NHLMKQ  IVPGLEHYTCIVGLLS++G LDEAE F
Sbjct: 425 NYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAENF 484

Query: 497 MRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRW 556
           MRS  + WDVV+W TLLNA  VH++Y  GR+IAEY+L ++P DVGTYILLSNM+A+ +RW
Sbjct: 485 MRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHARVRRW 544

Query: 557 DGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPL 616
           D V +IRKLM+ R VKKEPG SW EIRN  HVF S D  HPE++ IYE V++L +KI+PL
Sbjct: 545 DHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENVKDLLSKIRPL 604

Query: 617 GYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAV 676
           GYVPD+  VLHD+EDEQK D L++HSEKLA+AY LM+TP  API VIKNLRMCDDCH+A+
Sbjct: 605 GYVPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYGLMKTPSGAPITVIKNLRMCDDCHTAI 664

Query: 677 KLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW 709
           KLISK+  R I+VRD NRFH FQ+GCCSC DYW
Sbjct: 665 KLISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]

 Score =  850 bits (2195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/679 (60%), Positives = 510/679 (75%), Gaps = 11/679 (1%)

Query: 41  ADSKDLKLGKVIHAHLIITTESS-----RNENVVLTNSLVNLYAKCNQISIARQLFDNMR 95
           A++K+L  GK IH  L+I  +SS     R  N++  NSL+NLY KC+++ +AR LFD M 
Sbjct: 23  ANTKNLNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMS 82

Query: 96  QRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGR 155
            R+VVSY+ LM  YLH+G  LE +KLFKNMVS    +PNEY+F+ VLS+C+ SGR  EG 
Sbjct: 83  LRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSL-YQPNEYVFTTVLSACAHSGRVFEGM 141

Query: 156 QCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGY-----DVFEYNSVLNG 210
           QCHG++FK GLVF  +V+++LV +Y+KC  V++A ++L+   G      D F YNSVLN 
Sbjct: 142 QCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNA 201

Query: 211 LIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPD 270
           L+E+      VEVLG+MV   V WDSVTYV+  GL   ++DL LGLQVH+Q+LK  +  D
Sbjct: 202 LVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTFD 261

Query: 271 VFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEY 330
           VF+ S ++ M+GKCG   +A+KVF+GL+ RNVV+WT+++ A  QN  FEE LNL   M+ 
Sbjct: 262 VFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDR 321

Query: 331 EAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEA 390
           E    NEFTFAV+LN+ AG++ALRHGDLLHA +EK G K  +IVGNALINMY+K G I++
Sbjct: 322 EGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNALINMYSKCGCIDS 381

Query: 391 ANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGH 450
           +  VF DMR RDIITWNAMICGYS HGLG++AL LFQ+ML+A E PNHVTFVGVLSAC H
Sbjct: 382 SYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSACAH 441

Query: 451 LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWH 510
           L LV EGFYYLN LMK   + PGLEHYTC+V +L +AG+L+EAE FMR+T VKWDVVAW 
Sbjct: 442 LALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWR 501

Query: 511 TLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK 570
            LLNA  +H+NY  G +IAE IL MDP D+GTY LLSNMYAK + WD V+ IRK+M+ R 
Sbjct: 502 VLLNACNIHRNYNLGTKIAETILQMDPRDMGTYTLLSNMYAKARSWDSVTMIRKMMRERN 561

Query: 571 VKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVE 630
           VKKEPG SW EIRN  HVF S  SNHPE  QIY KV+ L   IK LGYVP++ AVLHDVE
Sbjct: 562 VKKEPGVSWIEIRNAVHVFSSDGSNHPECIQIYNKVQLLLEMIKQLGYVPNIEAVLHDVE 621

Query: 631 DEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVR 690
           DEQKE YLN+HSEKLAIAY LM+ P  API VIKNLR+C+DCH+AVKLISK+T R IIVR
Sbjct: 622 DEQKESYLNYHSEKLAIAYGLMKIPSPAPIRVIKNLRICEDCHTAVKLISKVTNRLIIVR 681

Query: 691 DTNRFHRFQDGCCSCTDYW 709
           D +RFH F+DG C+CTD+W
Sbjct: 682 DASRFHHFRDGTCTCTDHW 700

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata] gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/675 (53%), Positives = 493/675 (73%)

Query: 35  KLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNM 94
           +LLK  A+S  L+ G+ IH HLI+T +SSR ++V   NSL+NLY KC +   AR++FD M
Sbjct: 36  ELLKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFDLM 95

Query: 95  RQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEG 154
            +RNVVS+ ++M  Y ++GF  E LKLFK+MV  D   PNE++ ++V  SCS SGR  EG
Sbjct: 96  PERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIEEG 155

Query: 155 RQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIEN 214
           +Q HG   KSGL+  ++VRN LV +Y+ C     A R+LD LP  D+  ++S L+G +E 
Sbjct: 156 KQFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLEC 215

Query: 215 ECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFIN 274
             F+ G EVL +M    +  D++TY++   L ++L+DL L  Q+HS+M++     +V  +
Sbjct: 216 GAFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVRLGFNSEVEAS 275

Query: 275 SAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIR 334
            A+I+MYGKCGK   A++VF+    +N+VL T ++ A FQ++ FEEALNLF  M+ + + 
Sbjct: 276 GAIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALNLFSKMDTKEVP 335

Query: 335 PNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKV 394
           PNE+TFA+ LNS A LS L+HGDLLH  + KSG++ H++VGNAL+NMYAK G+IE A K 
Sbjct: 336 PNEYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKA 395

Query: 395 FSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLV 454
           FS M +RDI+TWN MICG+SHHGLGRE L  F  M+ A E PN +TF+GVL AC H+G V
Sbjct: 396 FSGMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEIPNRITFIGVLQACSHVGFV 455

Query: 455 QEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLN 514
           ++G YY N LMK+  + P L+HYTCIVGLLSKAG+  +AE FMR+ P++WDVVAW  LLN
Sbjct: 456 EQGLYYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRALLN 515

Query: 515 ASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKE 574
           A  V +N+  G+++AEY ++  PND G Y+LLSN++AK + W+GV+++R LM  R VKKE
Sbjct: 516 ACYVRRNFRLGKKVAEYAIYKYPNDSGVYVLLSNIHAKSREWEGVAEVRSLMNKRGVKKE 575

Query: 575 PGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQK 634
           PG SW  IRN THVF++ ++ HPE + IY K++E+ +KI+PLGY PDVA V HDV++EQ+
Sbjct: 576 PGVSWIGIRNQTHVFLAEENQHPEITLIYAKIKEVLSKIRPLGYSPDVAGVFHDVDEEQR 635

Query: 635 EDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNR 694
           ED L++HSEKLA+AY LM+TP  +P+ V KN+R+CDDCHSA+KLISK++KR I++RD+NR
Sbjct: 636 EDNLSYHSEKLAVAYGLMKTPENSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNR 695

Query: 695 FHRFQDGCCSCTDYW 709
           FH F+DG CSC DYW
Sbjct: 696 FHHFRDGQCSCCDYW 710

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242443|ref|NP_198784.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171206|sp|Q9FK93.1|PP406_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39680; AltName: Full=Protein EMBRYO DEFECTIVE 2744 gi|9758344|dbj|BAB08900.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332007080|gb|AED94463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/695 (51%), Positives = 496/695 (71%)

Query: 15  RCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSL 74
           + A  + K  + P  ++   +LLK  A+S  L++G+ IHAHLI+T +SSR E+    NSL
Sbjct: 16  KLASLVPKSKKTPFPIDRLNELLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSL 75

Query: 75  VNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPN 134
           +NLY KC +   AR+LFD M +RNVVS+ ++M  Y ++GF  E LKLFK+M       PN
Sbjct: 76  INLYVKCRETVRARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPN 135

Query: 135 EYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLD 194
           E++ ++V  SCS SGR  EG+Q HG   K GL+  ++VRN LV +Y+ C     A R+LD
Sbjct: 136 EFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLD 195

Query: 195 LLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKL 254
            LP  D+  ++S L+G +E   F+ G++VL K  +    W+++TY+++  L ++L+DL L
Sbjct: 196 DLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNL 255

Query: 255 GLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQ 314
            LQVHS+M++     +V    A+I+MYGKCGK   A++VF+    +N+ L T ++ A FQ
Sbjct: 256 ALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQ 315

Query: 315 NEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIV 374
           ++ FEEALNLF  M+ + + PNE+TFA++LNS A LS L+ GDLLH  + KSG++ H++V
Sbjct: 316 DKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMV 375

Query: 375 GNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEE 434
           GNAL+NMYAK G+IE A K FS M +RDI+TWN MI G SHHGLGREAL  F  M+   E
Sbjct: 376 GNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGE 435

Query: 435 RPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE 494
            PN +TF+GVL AC H+G V++G +Y N LMK+  + P ++HYTCIVGLLSKAG+  +AE
Sbjct: 436 IPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGMFKDAE 495

Query: 495 KFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK 554
            FMR+ P++WDVVAW TLLNA  V +NY  G+++AEY +   PND G Y+LLSN++AK +
Sbjct: 496 DFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSR 555

Query: 555 RWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIK 614
            W+GV+K+R LM  R VKKEPG SW  IRN THVF++ D+ HPE + IY KV+E+ +KIK
Sbjct: 556 EWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEVMSKIK 615

Query: 615 PLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHS 674
           PLGY PDVA   HDV++EQ+ED L++HSEKLA+AY L++TP  +P+ V KN+R+CDDCHS
Sbjct: 616 PLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHS 675

Query: 675 AVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW 709
           A+KLISK++KR I++RD+NRFH F DG CSC DYW
Sbjct: 676 AIKLISKISKRYIVIRDSNRFHHFLDGQCSCCDYW 710

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/665 (49%), Positives = 461/665 (69%), Gaps = 8/665 (1%)

Query: 45  DLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSS 104
           DL  GK +HA LI    ++ + +VVL N+L++ YAKC ++ +AR +FD M  RN VS + 
Sbjct: 26  DLSKGKALHARLI----TAAHFDVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANL 81

Query: 105 LMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKS 164
           LM+ Y  +G   E+L+L + +    +   NEY+ S  +S+ +       GRQCHGY  K+
Sbjct: 82  LMSGYASSGRHKESLQLLRVV----DFGMNEYVLSAAVSATANVRSYDMGRQCHGYAVKA 137

Query: 165 GLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVL 224
           G    +YV NA++ +Y +C  +E A ++ + + G+D F +NS++NG ++     G + ++
Sbjct: 138 GFAEQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIV 197

Query: 225 GKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKC 284
             M   + +WD V+YV   G  AS+KD  LG QVH+Q LK  +E +V++ SA++ MYGKC
Sbjct: 198 RNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKC 257

Query: 285 GKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVML 344
               +A + FE L  +NVV WTA++ A  QNE +E+AL LF  ME E ++PNEFT+AV L
Sbjct: 258 DHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVAL 317

Query: 345 NSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDII 404
           NS AGL+ALR G+ L A + K+G  +HL+V NAL+NMY+K G+IE A++VF  M  RD++
Sbjct: 318 NSCAGLAALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVV 377

Query: 405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHL 464
           +WN +I GY+HHGL RE +  F +ML+A   P++VTFVGVLSAC  LGLV E FYYLN +
Sbjct: 378 SWNLIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSACAQLGLVDEAFYYLNTM 437

Query: 465 MKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGF 524
           MK++GI PG EHYTC+VGLL + G LDEAE+F+ +  +  DVVAW +LLN+ +V++NYG 
Sbjct: 438 MKEVGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTDVVAWRSLLNSCQVYKNYGL 497

Query: 525 GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRN 584
           G R+AE IL ++P+DVGTY+LLSNMYAK  RWDGV K+RK M+ R V+K PG SW  + +
Sbjct: 498 GHRVAEQILQLEPSDVGTYVLLSNMYAKANRWDGVVKVRKHMRERAVRKSPGVSWIHVGS 557

Query: 585 TTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEK 644
             HVF S +  HP+  QI +K+ EL  +IK +GYVP+ A VLHD++DE+KE++L +HSEK
Sbjct: 558 DVHVFTSEEKVHPQMDQIAKKLEELIDQIKAIGYVPNFAVVLHDIDDERKEEHLMYHSEK 617

Query: 645 LAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCS 704
           LA+A+ L+ TP  A I ++KNLR+CDDCH A+KLIS +T R I+VRD  RFH  + G CS
Sbjct: 618 LALAFGLIHTPKGATIHIMKNLRICDDCHVAIKLISVVTSRKIVVRDAVRFHCIEGGICS 677

Query: 705 CTDYW 709
           C DYW
Sbjct: 678 CNDYW 682

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39680-like [Brachypodium distachyon]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/665 (50%), Positives = 455/665 (68%), Gaps = 8/665 (1%)

Query: 45  DLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSS 104
           +L  GK IHA +I     + + +V+  N L+  Y KC ++ +ARQ+FD M  RN VS + 
Sbjct: 26  ELCTGKAIHAQMI----RAAHFDVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNL 81

Query: 105 LMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKS 164
           LM+ Y   G   + L L K      +   NEY+ S  LS+ +       GRQCHGY  KS
Sbjct: 82  LMSGYASAGRHSDALALLK----AADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKS 137

Query: 165 GLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVL 224
           GL    YV NA++ +Y +C  VE A ++ + + G+D+F +NS++NG ++   F G + ++
Sbjct: 138 GLQEHPYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIV 197

Query: 225 GKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKC 284
             MV    +WD V+YV   G  AS K+L LG QVH+Q LK  +E +V++ SA++ MYGKC
Sbjct: 198 RSMVGEVEQWDHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKC 257

Query: 285 GKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVML 344
               +A   FE L  +NVV WTA++ A  QNE FE+AL LF  +E E +RPNEFT+AV L
Sbjct: 258 DCARDAHSAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVAL 317

Query: 345 NSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDII 404
           NS AGL+AL++G+ L A   K+G    L V NAL+NMY+K G+I  A +VF  M +RD++
Sbjct: 318 NSCAGLAALKNGNALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVV 377

Query: 405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHL 464
           +WN++I GY+HHGL REA+ +F +ML AE  P++VTFVGVL AC  LGLV EG YYLN +
Sbjct: 378 SWNSVIIGYAHHGLAREAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIM 437

Query: 465 MKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGF 524
           MK++GI PG EHYTC+VGLL +AG LDEAE+F+ S  +  DVVAW +LL++ +V++NYG 
Sbjct: 438 MKEMGIKPGREHYTCMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGL 497

Query: 525 GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRN 584
           G R+AE IL + PNDVGTY+LLSNMYAK  RWDGV K+RKLM+ R V+KEPG SW ++ +
Sbjct: 498 GHRVAEQILQLKPNDVGTYVLLSNMYAKANRWDGVVKVRKLMRERGVRKEPGVSWIQVGS 557

Query: 585 TTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEK 644
             HVF S D NH   +QI  K++EL  +IK +GYVP+ A VLHDVE EQKE++L +HSEK
Sbjct: 558 EVHVFTSEDKNHKWINQITIKLKELIGQIKVIGYVPNCAVVLHDVEAEQKEEHLMYHSEK 617

Query: 645 LAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCS 704
           +A+A+ L+ +P    I ++KNLR+CDDCH A+KLIS +T+R I+VRDT RFH   DG CS
Sbjct: 618 MALAFGLIHSPEGETIRIMKNLRICDDCHVAIKLISVVTRRKIVVRDTVRFHCIDDGVCS 677

Query: 705 CTDYW 709
           C DYW
Sbjct: 678 CDDYW 682

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	709
TAIR|locus:2164880	710	EMB2744 "EMBRYO DEFECTIVE 2744	0.980	0.978	0.517	3.2e-200
TAIR|locus:2119440	1064	AT4G13650 [Arabidopsis thalian	0.937	0.625	0.382	9.3e-130
TAIR|locus:2038603	868	AT2G27610 "AT2G27610" [Arabido	0.923	0.754	0.393	1.1e-128
TAIR|locus:2178188	995	MEF7 "AT5G09950" [Arabidopsis	0.937	0.668	0.378	1.8e-126
TAIR|locus:2125899	990	AT4G33170 [Arabidopsis thalian	0.947	0.678	0.363	6.3e-124
TAIR|locus:2202074	809	CRR22 "CHLORORESPIRATORY REDUC	0.954	0.836	0.368	3.6e-121
TAIR|locus:2082886	850	EMB2261 "embryo defective 2261	0.942	0.785	0.356	4.7e-119
TAIR|locus:2096414	882	AT3G03580 [Arabidopsis thalian	0.928	0.746	0.358	4.9e-117
TAIR|locus:2140235	781	AT4G02750 [Arabidopsis thalian	0.891	0.809	0.375	6.2e-117
TAIR|locus:2078653	825	AT3G02010 [Arabidopsis thalian	0.925	0.795	0.344	1.2e-115

TAIR|locus:2164880 EMB2744 "EMBRYO DEFECTIVE 2744" [Arabidopsis thaliana (taxid:3702)]

 Score = 1938 (687.3 bits), Expect = 3.2e-200, P = 3.2e-200
 Identities = 360/695 (51%), Positives = 496/695 (71%)

Query:    15 RCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSL 74
             + A  + K  + P  ++   +LLK  A+S  L++G+ IHAHLI+T +SSR E+    NSL
Sbjct:    16 KLASLVPKSKKTPFPIDRLNELLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSL 75

Query:    75 VNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPN 134
             +NLY KC +   AR+LFD M +RNVVS+ ++M  Y ++GF  E LKLFK+M       PN
Sbjct:    76 INLYVKCRETVRARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPN 135

Query:   135 EYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLD 194
             E++ ++V  SCS SGR  EG+Q HG   K GL+  ++VRN LV +Y+ C     A R+LD
Sbjct:   136 EFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLD 195

Query:   195 LLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKL 254
              LP  D+  ++S L+G +E   F+ G++VL K  +    W+++TY+++  L ++L+DL L
Sbjct:   196 DLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNL 255

Query:   255 GLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQ 314
              LQVHS+M++     +V    A+I+MYGKCGK   A++VF+    +N+ L T ++ A FQ
Sbjct:   256 ALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQ 315

Query:   315 NEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIV 374
             ++ FEEALNLF  M+ + + PNE+TFA++LNS A LS L+ GDLLH  + KSG++ H++V
Sbjct:   316 DKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMV 375

Query:   375 GNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEE 434
             GNAL+NMYAK G+IE A K FS M +RDI+TWN MI G SHHGLGREAL  F  M+   E
Sbjct:   376 GNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGE 435

Query:   435 RPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE 494
              PN +TF+GVL AC H+G V++G +Y N LMK+  + P ++HYTCIVGLLSKAG+  +AE
Sbjct:   436 IPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGMFKDAE 495

Query:   495 KFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK 554
              FMR+ P++WDVVAW TLLNA  V +NY  G+++AEY +   PND G Y+LLSN++AK +
Sbjct:   496 DFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSR 555

Query:   555 RWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIK 614
              W+GV+K+R LM  R VKKEPG SW  IRN THVF++ D+ HPE + IY KV+E+ +KIK
Sbjct:   556 EWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEVMSKIK 615

Query:   615 PLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHS 674
             PLGY PDVA   HDV++EQ+ED L++HSEKLA+AY L++TP  +P+ V KN+R+CDDCHS
Sbjct:   616 PLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHS 675

Query:   675 AVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW 709
             A+KLISK++KR I++RD+NRFH F DG CSC DYW
Sbjct:   676 AIKLISKISKRYIVIRDSNRFHHFLDGQCSCCDYW 710

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)]

 Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
 Identities = 256/670 (38%), Positives = 390/670 (58%)

Query:    40 SADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNV 99
             SAD   L  G+ +HA+   TT+     N  +  +L+NLYAKC  I  A   F      NV
Sbjct:   400 SADGT-LFRGQQLHAY---TTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENV 455

Query:   100 VSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHG 159
             V ++ ++  Y     L  + ++F+ M   + + PN+Y +  +L +C R G    G Q H 
Sbjct:   456 VLWNVMLVAYGLLDDLRNSFRIFRQMQI-EEIVPNQYTYPSILKTCIRLGDLELGEQIHS 514

Query:   160 YVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRG 219
              + K+      YV + L+++Y K   ++ A  +L    G DV  + +++ G  +      
Sbjct:   515 QIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDK 574

Query:   220 GVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMIS 279
              +    +M+   +R D V   NA    A L+ LK G Q+H+Q   S    D+   +A+++
Sbjct:   575 ALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVT 634

Query:   280 MYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFT 339
             +Y +CGK   +   FE  E  + + W A+V+   Q+   EEAL +F  M  E I  N FT
Sbjct:   635 LYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFT 694

Query:   340 FAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR 399
             F   + +A+  + ++ G  +HA I K+G+     V NALI+MYAK G+I  A K F ++ 
Sbjct:   695 FGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVS 754

Query:   400 YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFY 459
              ++ ++WNA+I  YS HG G EAL  F  M+ +  RPNHVT VGVLSAC H+GLV +G  
Sbjct:   755 TKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIA 814

Query:   460 YLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVH 519
             Y   +  + G+ P  EHY C+V +L++AGLL  A++F++  P+K D + W TLL+A  VH
Sbjct:   815 YFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVH 874

Query:   520 QNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSW 579
             +N   G   A ++L ++P D  TY+LLSN+YA  K+WD     R+ MK + VKKEPG SW
Sbjct:   875 KNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSW 934

Query:   580 TEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLN 639
              E++N+ H F  GD NHP + +I+E  ++L+ +   +GYV D  ++L++++ EQK+  + 
Sbjct:   935 IEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIF 994

Query:   640 HHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQ 699
              HSEKLAI++ L+  P T PI V+KNLR+C+DCH+ +K +SK++ R+IIVRD  RFH F+
Sbjct:   995 IHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFE 1054

Query:   700 DGCCSCTDYW 709
              G CSC DYW
Sbjct:  1055 GGACSCKDYW 1064

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)]

 Score = 1263 (449.7 bits), Expect = 1.1e-128, P = 1.1e-128
 Identities = 261/664 (39%), Positives = 403/664 (60%)

Query:    49 GKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTW 108
             G+ +  H ++  ++  ++ + ++NSL+NLY KC  +  AR LFD    ++VV+++S+++ 
Sbjct:   211 GRGLQVHTVVV-KNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISG 269

Query:   109 YLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVF 168
             Y  NG  LE L +F +M   + +  +E  F+ V+  C+         Q H  V K G +F
Sbjct:   270 YAANGLDLEALGMFYSMRL-NYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLF 328

Query:   169 CKYVRNALVELYTKCLDVEMAKRLLDLLPGY-DVFEYNSVLNGLIENECFRGGVEVLGKM 227
              + +R AL+  Y+KC  +  A RL   +    +V  + ++++G ++N+     V++  +M
Sbjct:   329 DQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEM 388

Query:   228 VSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKF 287
                 VR +  TY  +  L+A L  +    +VH+Q++K++ E    + +A++  Y K GK 
Sbjct:   389 KRKGVRPNEFTY--SVILTA-LPVISPS-EVHAQVVKTNYERSSTVGTALLDAYVKLGKV 444

Query:   288 SNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSA 347
               A KVF G++ +++V W+AM+A   Q    E A+ +F  +    I+PNEFTF+ +LN  
Sbjct:   445 EEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVC 504

Query:   348 AGLSA-LRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITW 406
             A  +A +  G   H    KS     L V +AL+ MYAK GNIE+A +VF   R +D+++W
Sbjct:   505 AATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSW 564

Query:   407 NAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMK 466
             N+MI GY+ HG   +AL +F+ M   + + + VTF+GV +AC H GLV+EG  Y + +++
Sbjct:   565 NSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVR 624

Query:   467 QIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGR 526
                I P  EH +C+V L S+AG L++A K + + P       W T+L A RVH+    GR
Sbjct:   625 DCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGR 684

Query:   527 RIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTT 586
               AE I+ M P D   Y+LLSNMYA+   W   +K+RKLM  R VKKEPG SW E++N T
Sbjct:   685 LAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKT 744

Query:   587 HVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLA 646
             + F++GD +HP   QIY K+ +LS ++K LGY PD + VL D++DE KE  L  HSE+LA
Sbjct:   745 YSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLA 804

Query:   647 IAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQ-DGCCSC 705
             IA+ L+ TP  +P+L+IKNLR+C DCH  +KLI+K+ +R+I+VRD+NRFH F  DG CSC
Sbjct:   805 IAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSC 864

Query:   706 TDYW 709
              D+W
Sbjct:   865 GDFW 868

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)]

 Score = 1242 (442.3 bits), Expect = 1.8e-126, P = 1.8e-126
 Identities = 256/676 (37%), Positives = 405/676 (59%)

Query:    41 ADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVV 100
             A+   LK G+ +H H +ITT    +  V + N LVN+YAKC  I+ AR++F  M  ++ V
Sbjct:   324 AEEVGLKKGREVHGH-VITT-GLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSV 381

Query:   101 SYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGY 160
             S++S++T    NG  +E ++ +K+M   D L P  +     LSSC+       G+Q HG 
Sbjct:   382 SWNSMITGLDQNGCFIEAVERYKSMRRHDIL-PGSFTLISSLSSCASLKWAKLGQQIHGE 440

Query:   161 VFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGG 220
               K G+     V NAL+ LY +   +   +++   +P +D   +NS++  L  +E     
Sbjct:   441 SLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPE 500

Query:   221 VEV--LGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMI 278
               V  L    +G  + + +T+ +     +SL   +LG Q+H   LK++I  +    +A+I
Sbjct:   501 AVVCFLNAQRAGQ-KLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALI 559

Query:   279 SMYGKCGKFSNAKKVFEGL-ETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNE 337
             + YGKCG+    +K+F  + E R+ V W +M++    NE   +AL+L   M     R + 
Sbjct:   560 ACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDS 619

Query:   338 FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSD 397
             F +A +L++ A ++ L  G  +HA   ++  +  ++VG+AL++MY+K G ++ A + F+ 
Sbjct:   620 FMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNT 679

Query:   398 MRYRDIITWNAMICGYSHHGLGREALTLFQNM-LAAEERPNHVTFVGVLSACGHLGLVQE 456
             M  R+  +WN+MI GY+ HG G EAL LF+ M L  +  P+HVTFVGVLSAC H GL++E
Sbjct:   680 MPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEE 739

Query:   457 GFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNAS 516
             GF +   +    G+ P +EH++C+  +L +AG LD+ E F+   P+K +V+ W T+L A 
Sbjct:   740 GFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGAC 799

Query:   517 -RVH-QNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKE 574
              R + +    G++ AE +  ++P +   Y+LL NMYA   RW+ + K RK MK   VKKE
Sbjct:   800 CRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKE 859

Query:   575 PGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQK 634
              G SW  +++  H+F++GD +HP++  IY+K++EL+ K++  GYVP     L+D+E E K
Sbjct:   860 AGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENK 919

Query:   635 EDYLNHHSEKLAIAYALM-ETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTN 693
             E+ L++HSEKLA+A+ L  +   T PI ++KNLR+C DCHSA K ISK+  R II+RD+N
Sbjct:   920 EEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSN 979

Query:   694 RFHRFQDGCCSCTDYW 709
             RFH FQDG CSC+D+W
Sbjct:   980 RFHHFQDGACSCSDFW 995

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009451 "RNA modification" evidence=IMP

TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 1218 (433.8 bits), Expect = 6.3e-124, P = 6.3e-124
 Identities = 247/679 (36%), Positives = 397/679 (58%)

Query:    33 TLKLLKHSADSKD-LKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLF 91
             T  L+  +A   D L LG+ +H    +  +   +  + ++NSL+N+Y K  +   AR +F
Sbjct:   317 TFILMLATAVKVDSLALGQQVHC---MALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373

Query:    92 DNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRG 151
             DNM +R+++S++S++     NG  +E + LF  ++    L+P++Y  + VL + S    G
Sbjct:   374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRC-GLKPDQYTMTSVLKAASSLPEG 432

Query:   152 AE-GRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNG 210
                 +Q H +  K   V   +V  AL++ Y++   ++ A+ L +    +D+  +N+++ G
Sbjct:   433 LSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAG 491

Query:   211 LIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPD 270
               ++      +++   M     R D  T    F     L  +  G QVH+  +KS  + D
Sbjct:   492 YTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLD 551

Query:   271 VFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEY 330
             ++++S ++ MY KCG  S A+  F+ +   + V WT M++ C +N   E A ++F  M  
Sbjct:   552 LWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRL 611

Query:   331 EAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEA 390
               + P+EFT A +  +++ L+AL  G  +HA+  K        VG +L++MYAK G+I+ 
Sbjct:   612 MGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDD 671

Query:   391 ANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGH 450
             A  +F  +   +I  WNAM+ G + HG G+E L LF+ M +   +P+ VTF+GVLSAC H
Sbjct:   672 AYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSH 731

Query:   451 LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWH 510
              GLV E + ++  +    GI P +EHY+C+   L +AGL+ +AE  + S  ++     + 
Sbjct:   732 SGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYR 791

Query:   511 TLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK 570
             TLL A RV  +   G+R+A  +L ++P D   Y+LLSNMYA   +WD +   R +MK  K
Sbjct:   792 TLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHK 851

Query:   571 VKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVE 630
             VKK+PG SW E++N  H+F+  D ++ ++  IY KV+++   IK  GYVP+    L DVE
Sbjct:   852 VKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVE 911

Query:   631 DEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVR 690
             +E+KE  L +HSEKLA+A+ L+ TPP+ PI VIKNLR+C DCH+A+K I+K+  R+I++R
Sbjct:   912 EEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLR 971

Query:   691 DTNRFHRFQDGCCSCTDYW 709
             D NRFHRF+DG CSC DYW
Sbjct:   972 DANRFHRFKDGICSCGDYW 990

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)]

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 251/682 (36%), Positives = 393/682 (57%)

Query:    28 PSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIA 87
             P V +   LLK   D  +L++GK IH  L+   +S  + ++     L N+YAKC Q++ A
Sbjct:   133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLV---KSGFSLDLFAMTGLENMYAKCRQVNEA 189

Query:    88 RQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSR 147
             R++FD M +R++VS+++++  Y  NG     L++ K+M   +NL+P+      VL + S 
Sbjct:   190 RKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCE-ENLKPSFITIVSVLPAVSA 248

Query:   148 SGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSV 207
                 + G++ HGY  +SG      +  ALV++Y KC  +E A++L D +   +V  +NS+
Sbjct:   249 LRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSM 308

Query:   208 LNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDI 267
             ++  ++NE  +  + +  KM+   V+   V+ + A    A L DL+ G  +H   ++  +
Sbjct:   309 IDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGL 368

Query:   268 EPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCG 327
             + +V + +++ISMY KC +   A  +F  L++R +V W AM+    QN    +ALN F  
Sbjct:   369 DRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQ 428

Query:   328 MEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGN 387
             M    ++P+ FT+  ++ + A LS   H   +H  + +S   +++ V  AL++MYAK G 
Sbjct:   429 MRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGA 488

Query:   388 IEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSA 447
             I  A  +F  M  R + TWNAMI GY  HG G+ AL LF+ M     +PN VTF+ V+SA
Sbjct:   489 IMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISA 548

Query:   448 CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVV 507
             C H GLV+ G      + +   I   ++HY  +V LL +AG L+EA  F+   PVK  V 
Sbjct:   549 CSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN 608

Query:   508 AWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK 567
              +  +L A ++H+N  F  + AE +  ++P+D G ++LL+N+Y     W+ V ++R  M 
Sbjct:   609 VYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSML 668

Query:   568 VRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLH 627
              + ++K PG S  EI+N  H F SG + HP+S +IY  + +L   IK  GYVPD   VL 
Sbjct:   669 RQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL- 727

Query:   628 DVEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDI 687
              VE++ KE  L+ HSEKLAI++ L+ T     I V KNLR+C DCH+A K IS +T R+I
Sbjct:   728 GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREI 787

Query:   688 IVRDTNRFHRFQDGCCSCTDYW 709
             +VRD  RFH F++G CSC DYW
Sbjct:   788 VVRDMQRFHHFKNGACSCGDYW 809

GO:0005739 "mitochondrion" evidence=ISM

GO:0004519 "endonuclease activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA;IMP

TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)]

 Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
 Identities = 244/685 (35%), Positives = 404/685 (58%)

Query:    36 LLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKC-NQISIARQLFDNM 94
             +++  ++S  + +G+V    L+ T       +V +  SL++++ K  N    A ++FD M
Sbjct:   172 VIRACSNSDFVGVGRVTLGFLMKTGHFE--SDVCVGCSLIDMFVKGENSFENAYKVFDKM 229

Query:    95 RQRNVVSYSSLMTWYLHNGFLLETLKLFKNMV-SGDNLEPNEYIFSIVLSSCSRSGRGAE 153
              + NVV+++ ++T  +  GF  E ++ F +MV SG   E +++  S V S+C+     + 
Sbjct:   230 SELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSG--FESDKFTLSSVFSACAELENLSL 287

Query:   154 GRQCHGYVFKSGLVFCKYVRNALVELYTKCL---DVEMAKRLLDLLPGYDVFEYNSVLNG 210
             G+Q H +  +SGLV    V  +LV++Y KC     V+  +++ D +  + V  + +++ G
Sbjct:   288 GKQLHSWAIRSGLV--DDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITG 345

Query:   211 LIEN-ECFRGGVEVLGKMVS-GSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIE 268
              ++N       + +  +M++ G V  +  T+ +AF    +L D ++G QV  Q  K  + 
Sbjct:   346 YMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLA 405

Query:   269 PDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGM 328
              +  + +++ISM+ K  +  +A++ FE L  +N+V +   +    +N  FE+A  L   +
Sbjct:   406 SNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEI 465

Query:   329 EYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNI 388
                 +  + FTFA +L+  A + ++R G+ +H+ + K G   +  V NALI+MY+K G+I
Sbjct:   466 TERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSI 525

Query:   389 EAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSAC 448
             + A++VF+ M  R++I+W +MI G++ HG     L  F  M+    +PN VT+V +LSAC
Sbjct:   526 DTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSAC 585

Query:   449 GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVA 508
              H+GLV EG+ + N + +   I P +EHY C+V LL +AGLL +A +F+ + P + DV+ 
Sbjct:   586 SHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLV 645

Query:   509 WHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV 568
             W T L A RVH N   G+  A  IL +DPN+   YI LSN+YA   +W+  +++R+ MK 
Sbjct:   646 WRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKE 705

Query:   569 RKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHD 628
             R + KE G SW E+ +  H F  GD+ HP + QIY+++  L  +IK  GYVPD   VLH 
Sbjct:   706 RNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHK 765

Query:   629 VEDE----QKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTK 684
             +E+E    +KE  L  HSEK+A+A+ L+ T  + P+ V KNLR+C DCH+A+K IS ++ 
Sbjct:   766 LEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSG 825

Query:   685 RDIIVRDTNRFHRFQDGCCSCTDYW 709
             R+I++RD NRFH F+DG CSC DYW
Sbjct:   826 REIVLRDLNRFHHFKDGKCSCNDYW 850

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)]

 Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
 Identities = 239/666 (35%), Positives = 383/666 (57%)

Query:    46 LKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSL 105
             +K G+ +H   +   +S  N  VV+ N LV +Y K  + + AR++FD M  R+ VSY+++
Sbjct:   223 VKQGQGLHGFAL---KSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTM 279

Query:   106 MTWYLHNGFLLETLKLF-KNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKS 164
             +  YL    + E++++F +N+   D  +P+    S VL +C      +  +  + Y+ K+
Sbjct:   280 ICGYLKLEMVEESVRMFLENL---DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKA 336

Query:   165 GLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVL 224
             G V    VRN L+++Y KC D+  A+ + + +   D   +NS+++G I++      +++ 
Sbjct:   337 GFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLF 396

Query:   225 GKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKC 284
               M+    + D +TY+    +S  L DLK G  +HS  +KS I  D+ +++A+I MY KC
Sbjct:   397 KMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKC 456

Query:   285 GKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVML 344
             G+  ++ K+F  + T + V W  +++AC +   F   L +   M    + P+  TF V L
Sbjct:   457 GEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTL 516

Query:   345 NSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDII 404
                A L+A R G  +H  + + G++  L +GNALI MY+K G +E +++VF  M  RD++
Sbjct:   517 PMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVV 576

Query:   405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHL 464
             TW  MI  Y  +G G +AL  F +M  +   P+ V F+ ++ AC H GLV EG      +
Sbjct:   577 TWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKM 636

Query:   465 MKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGF 524
                  I P +EHY C+V LLS++  + +AE+F+++ P+K D   W ++L A R   +   
Sbjct:   637 KTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMET 696

Query:   525 GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRN 584
               R++  I+ ++P+D G  IL SN YA  ++WD VS IRK +K + + K PG SW E+  
Sbjct:   697 AERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGK 756

Query:   585 TTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQ-KEDYLNHHSE 643
               HVF SGD + P+S  IY+ +  L + +   GY+PD   V  ++E+E+ K   +  HSE
Sbjct:   757 NVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSE 816

Query:   644 KLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCC 703
             +LAIA+ L+ T P  P+ V+KNLR+C DCH   KLISK+  R+I+VRD NRFH F+DG C
Sbjct:   817 RLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTC 876

Query:   704 SCTDYW 709
             SC D W
Sbjct:   877 SCKDRW 882

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)]

 Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
 Identities = 251/668 (37%), Positives = 381/668 (57%)

Query:    67 NVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMV 126
             ++V  N ++  Y +   +  AR+LF+ M +R+V S++++++ Y  NG + +   +F  M 
Sbjct:   125 DLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMP 184

Query:   127 SGDNLEPNEYIFSIVLSS-----C----SRSGRGAEGRQC--HGYVFKSGLVFCKY---- 171
               +++  N  + + V +S     C    SR         C   G+V K  +V  +     
Sbjct:   185 EKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDS 244

Query:   172 --VR-----NALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVL 224
               VR     N ++  Y +   ++ A++L D  P  DVF + ++++G I+N       E+ 
Sbjct:   245 MNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELF 304

Query:   225 GKMVS-GSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEP--DVFINSAMISMY 281
              KM     V W+++       L+  ++  ++  ++  ++   D+ P  +V   + MI+ Y
Sbjct:   305 DKMPERNEVSWNAM-------LAGYVQGERM--EMAKELF--DVMPCRNVSTWNTMITGY 353

Query:   282 GKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFA 341
              +CGK S AK +F+ +  R+ V W AM+A   Q+ +  EAL LF  ME E  R N  +F+
Sbjct:   354 AQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFS 413

Query:   342 VMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYR 401
               L++ A + AL  G  LH  + K G++    VGNAL+ MY K G+IE AN +F +M  +
Sbjct:   414 SALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK 473

Query:   402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYL 461
             DI++WN MI GYS HG G  AL  F++M     +P+  T V VLSAC H GLV +G  Y 
Sbjct:   474 DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 533

Query:   462 NHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQN 521
               + +  G++P  +HY C+V LL +AGLL++A   M++ P + D   W TLL ASRVH N
Sbjct:   534 YTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGN 593

Query:   522 YGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTE 581
                    A+ I  M+P + G Y+LLSN+YA   RW  V K+R  M+ + VKK PG SW E
Sbjct:   594 TELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 653

Query:   582 IRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHH 641
             I+N TH F  GD  HPE  +I+  + EL  ++K  GYV   + VLHDVE+E+KE  + +H
Sbjct:   654 IQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYH 713

Query:   642 SEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDG 701
             SE+LA+AY +M      PI VIKNLR+C+DCH+A+K ++++T R II+RD NRFH F+DG
Sbjct:   714 SERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDG 773

Query:   702 CCSCTDYW 709
              CSC DYW
Sbjct:   774 SCSCGDYW 781

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)]

 Score = 1140 (406.4 bits), Expect = 1.2e-115, P = 1.2e-115
 Identities = 227/659 (34%), Positives = 376/659 (57%)

Query:    52 IHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLH 111
             +HA   +      N  + ++N L+  Y +  ++ +A  LF+ + +++ V++++L+T Y  
Sbjct:   169 VHA-FAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEK 227

Query:   112 NGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKY 171
             +G   E++ LF  M    + +P+++ FS VL +       A G+Q H     +G      
Sbjct:   228 DGLYTESIHLFLKMRQSGH-QPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDAS 286

Query:   172 VRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGS 231
             V N +++ Y+K   V   + L D +P  D   YN V++   + + +   +    +M    
Sbjct:   287 VGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMG 346

Query:   232 VRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAK 291
                 +  +     ++A+L  L++G Q+H Q L +  +  + + ++++ MY KC  F  A+
Sbjct:   347 FDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAE 406

Query:   292 KVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLS 351
              +F+ L  R  V WTA+++   Q       L LF  M    +R ++ TFA +L ++A  +
Sbjct:   407 LIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFA 466

Query:   352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMIC 411
             +L  G  LHA I +SG  E++  G+ L++MYAK G+I+ A +VF +M  R+ ++WNA+I 
Sbjct:   467 SLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALIS 526

Query:   412 GYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIV 471
              ++ +G G  A+  F  M+ +  +P+ V+ +GVL+AC H G V++G  Y   +    GI 
Sbjct:   527 AHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGIT 586

Query:   472 PGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEY 531
             P  +HY C++ LL + G   EAEK M   P + D + W ++LNA R+H+N     R AE 
Sbjct:   587 PKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEK 646

Query:   532 ILHMDP-NDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFI 590
             +  M+   D   Y+ +SN+YA    W+ V  ++K M+ R +KK P  SW E+ +  HVF 
Sbjct:   647 LFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFS 706

Query:   591 SGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYA 650
             S D  HP   +I  K+ EL+A+I+  GY PD ++V+ DV+++ K + L +HSE+LA+A+A
Sbjct:   707 SNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFA 766

Query:   651 LMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW 709
             L+ TP   PI+V+KNLR C DCH+A+KLISK+ KR+I VRDT+RFH F +G CSC DYW
Sbjct:   767 LISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FK93	PP406_ARATH	No assigned EC number	0.5179	0.9802	0.9788	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVII.1149.1 hypothetical protein (679 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	709
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-153
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-152
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-66
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-49
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-44
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-38
pfam14432	116	pfam14432, DYW_deaminase, DYW family of nucleic ac	4e-28
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-18
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-11
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-04
pfam01535	31	pfam01535, PPR, PPR repeat	3e-04

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  466 bits (1201), Expect = e-153
 Identities = 225/664 (33%), Positives = 369/664 (55%), Gaps = 9/664 (1%)

Query: 45  DLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSS 104
           DL  G+ +HAH++         +V + N+L+ +Y KC  +  AR +FD M +R+ +S+++
Sbjct: 202 DLARGREVHAHVV---RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNA 258

Query: 105 LMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKS 164
           +++ Y  NG  LE L+LF  M    +++P+    + V+S+C   G    GR+ HGYV K+
Sbjct: 259 MISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317

Query: 165 GLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVL 224
           G      V N+L+++Y        A+++   +   D   + ++++G  +N      +E  
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETY 377

Query: 225 GKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKC 284
             M   +V  D +T  +     A L DL +G+++H    +  +   V + +A+I MY KC
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437

Query: 285 GKFSNAKKVFEGLETRNVVLWTAMVAA-CFQNEYFEEALNLFCGMEYEAIRPNEFTFAVM 343
                A +VF  +  ++V+ WT+++A     N  FE AL  F  M    ++PN  T    
Sbjct: 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE-ALIFFRQMLLT-LKPNSVTLIAA 495

Query: 344 LNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDI 403
           L++ A + AL  G  +HAH+ ++G      + NAL+++Y + G +  A   F+    +D+
Sbjct: 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDV 554

Query: 404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNH 463
           ++WN ++ GY  HG G  A+ LF  M+ +   P+ VTF+ +L AC   G+V +G  Y + 
Sbjct: 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614

Query: 464 LMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYG 523
           + ++  I P L+HY C+V LL +AG L EA  F+   P+  D   W  LLNA R+H++  
Sbjct: 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVE 674

Query: 524 FGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIR 583
            G   A++I  +DPN VG YILL N+YA   +WD V+++RK M+   +  +PG SW E++
Sbjct: 675 LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK 734

Query: 584 NTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSE 643
              H F++ D +HP+  +I   +     K+K  G     ++ + ++E   K+D    HSE
Sbjct: 735 GKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIE-VSKDDIFCGHSE 793

Query: 644 KLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCC 703
           +LAIA+ L+ T P  PI V KNL MC++CH+ VK ISK+ +R+I VRDT +FH F+DG C
Sbjct: 794 RLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGEC 853

Query: 704 SCTD 707
           SC D
Sbjct: 854 SCGD 857

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  456 bits (1175), Expect = e-152
 Identities = 203/595 (34%), Positives = 338/595 (56%), Gaps = 4/595 (0%)

Query: 117 ETLKLFKNMVSGDNLEPNEYIFSIVLSSCS--RSGRGAEGRQCHGYVFKSGLVFCKYVRN 174
           E L+LF+ + +G         +  ++ +C   +S R    +  + +V  SG    +Y+ N
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCV--KAVYWHVESSGFEPDQYMMN 162

Query: 175 ALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRW 234
            ++ ++ KC  +  A+RL D +P  ++  + +++ GL++   +R    +  +M       
Sbjct: 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222

Query: 235 DSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVF 294
           +  T+V     SA L   + G Q+H  +LK+ +  D F++ A+I MY KCG   +A+ VF
Sbjct: 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282

Query: 295 EGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALR 354
           +G+  +  V W +M+A    + Y EEAL L+  M    +  ++FTF++M+   + L+ L 
Sbjct: 283 DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342

Query: 355 HGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYS 414
           H    HA + ++GF   ++   AL+++Y+K G +E A  VF  M  +++I+WNA+I GY 
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402

Query: 415 HHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL 474
           +HG G +A+ +F+ M+A    PNHVTF+ VLSAC + GL ++G+     + +   I P  
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462

Query: 475 EHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILH 534
            HY C++ LL + GLLDEA   +R  P K  V  W  LL A R+H+N   GR  AE +  
Sbjct: 463 MHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522

Query: 535 MDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDS 594
           M P  +  Y++L N+Y    R    +K+ + +K + +   P  +W E++   H F SGD 
Sbjct: 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582

Query: 595 NHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMET 654
            HP+S +IY+K+ EL  +I   GYV +   +L DV++++++    +HSEKLAIA+ L+ T
Sbjct: 583 LHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT 642

Query: 655 PPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW 709
               P+ + ++ R+C DCH  +K I+ +TKR+I+VRD +RFH F+ G CSC DYW
Sbjct: 643 SEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  234 bits (598), Expect = 3e-66
 Identities = 139/448 (31%), Positives = 238/448 (53%), Gaps = 9/448 (2%)

Query: 68  VVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVS 127
           V L N++++++ +  ++  A  +F  M +R++ S++ L+  Y   G+  E L L+  M+ 
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180

Query: 128 GDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVE 187
              + P+ Y F  VL +C      A GR+ H +V + G      V NAL+ +Y KC DV 
Sbjct: 181 A-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239

Query: 188 MAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSA 247
            A+ + D +P  D   +N++++G  EN     G+E+   M   SV  D +T  +      
Sbjct: 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299

Query: 248 SLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTA 307
            L D +LG ++H  ++K+    DV + +++I MY   G +  A+KVF  +ET++ V WTA
Sbjct: 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359

Query: 308 MVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSG 367
           M++   +N   ++AL  +  ME + + P+E T A +L++ A L  L  G  LH   E+ G
Sbjct: 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419

Query: 368 FKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQ 427
              +++V NALI MY+K   I+ A +VF ++  +D+I+W ++I G   +    EAL  F+
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR 479

Query: 428 NMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHY--TCIVGLLS 485
            ML    +PN VT +  LSAC  +G +  G     H+++  GI  G + +    ++ L  
Sbjct: 480 QML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGI--GFDGFLPNALLDLYV 535

Query: 486 KAGLLDEAEKFMRSTPVKWDVVAWHTLL 513
           + G ++ A     S   + DVV+W+ LL
Sbjct: 536 RCGRMNYAWNQFNSH--EKDVVSWNILL 561

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  186 bits (473), Expect = 2e-49
 Identities = 115/430 (26%), Positives = 211/430 (49%), Gaps = 4/430 (0%)

Query: 112 NGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKY 171
           +G L + LKL ++M     +  +E  +  +   C       EG +       S       
Sbjct: 64  HGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR 122

Query: 172 VRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGS 231
           + NA++ ++ +  ++  A  +   +P  D+F +N ++ G  +   F   + +  +M+   
Sbjct: 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182

Query: 232 VRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAK 291
           VR D  T+         + DL  G +VH+ +++   E DV + +A+I+MY KCG   +A+
Sbjct: 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242

Query: 292 KVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLS 351
            VF+ +  R+ + W AM++  F+N    E L LF  M   ++ P+  T   ++++   L 
Sbjct: 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302

Query: 352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMIC 411
             R G  +H ++ K+GF   + V N+LI MY   G+   A KVFS M  +D ++W AMI 
Sbjct: 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362

Query: 412 GYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIV 471
           GY  +GL  +AL  +  M      P+ +T   VLSAC  LG +  G   L+ L ++ G++
Sbjct: 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV-KLHELAERKGLI 421

Query: 472 PGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRV-HQNYGFGRRIAE 530
             +     ++ + SK   +D+A +   + P K DV++W +++   R+ ++ +       +
Sbjct: 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRCFEALIFFRQ 480

Query: 531 YILHMDPNDV 540
            +L + PN V
Sbjct: 481 MLLTLKPNSV 490

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  171 bits (434), Expect = 2e-44
 Identities = 116/417 (27%), Positives = 186/417 (44%), Gaps = 49/417 (11%)

Query: 205 NSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLK 264
           NS L  L  +      +++L  M    V  D   YV  F L    + ++ G +V S+ L 
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114

Query: 265 SDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNL 324
           S     V + +AM+SM+ + G+  +A  VF  +  R++  W  +V    +  YF+EAL L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174

Query: 325 FCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK 384
           +  M +  +RP+ +TF  +L +  G+  L  G  +HAH+ + GF+  + V NALI MY K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234

Query: 385 GGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGV 444
            G++ +A  VF  M  RD I+WNAMI GY  +G   E L LF  M      P+ +T   V
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294

Query: 445 LSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKW 504
           +SAC  LG  + G     +++K  G    +     ++ +    G   EAEK       K 
Sbjct: 295 ISACELLGDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK- 352

Query: 505 DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN----------------------DVG- 541
           D V+W  +++    ++  G   +  E    M+ +                      DVG 
Sbjct: 353 DAVSWTAMISG---YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409

Query: 542 ------------TYILLSN----MYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEI 582
                       +Y++++N    MY+K K  D   ++   +  + V      SWT I
Sbjct: 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV-----ISWTSI 461

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  151 bits (383), Expect = 3e-38
 Identities = 76/282 (26%), Positives = 145/282 (51%), Gaps = 3/282 (1%)

Query: 72  NSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNL 131
           N ++ ++ KC  +  AR+LFD M +RN+ S+ +++   +  G   E   LF+ M   D  
Sbjct: 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW-EDGS 220

Query: 132 EPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKR 191
           +     F ++L + +  G    G+Q H  V K+G+V   +V  AL+++Y+KC D+E A+ 
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280

Query: 192 LLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKD 251
           + D +P      +NS+L G   +      + +  +M    V  D  T+     + + L  
Sbjct: 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340

Query: 252 LKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAA 311
           L+   Q H+ ++++    D+  N+A++ +Y K G+  +A+ VF+ +  +N++ W A++A 
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400

Query: 312 CFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAA--GLS 351
              +    +A+ +F  M  E + PN  TF  +L++    GLS
Sbjct: 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442

Length = 697

>gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases

 Score =  108 bits (272), Expect = 4e-28
 Identities = 53/131 (40%), Positives = 68/131 (51%), Gaps = 23/131 (17%)

Query: 575 PGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQK 634
           PG  W+E        +SGD +HP S        EL  +IK  G VP+   + HDV+ E+ 
Sbjct: 1   PGCVWSEG----KKTLSGDGSHPTSK------EELFQRIKVEGVVPETKEIGHDVDAEEF 50

Query: 635 ED------YLNHHSEKLAIAYALMETPPTAPILVIKNL-RMCDDCHSAVKLISKLTKRDI 687
            D       L  H+EK A+AY L+ T        IK L RMC DCH   + I+K T R+I
Sbjct: 51  RDNGIKGKLLASHAEKQALAYGLLTTRI------IKVLKRMCGDCHEFFRYIAKYTGREI 104

Query: 688 IVRDTNRFHRF 698
           IVRD +RFH F
Sbjct: 105 IVRDPSRFHHF 115

A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 88.8 bits (220), Expect = 3e-18
 Identities = 69/288 (23%), Positives = 137/288 (47%), Gaps = 16/288 (5%)

Query: 66  ENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNM 125
            +  ++ +L+++Y+KC  I  AR +FD M ++  V+++S++  Y  +G+  E L L+  M
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316

Query: 126 VSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLD 185
                +  +++ FSI++   SR       +Q H  + ++G         ALV+LY+K   
Sbjct: 317 RDS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375

Query: 186 VEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTY---VNA 242
           +E A+ + D +P  ++  +N+++ G   +      VE+  +M++  V  + VT+   ++A
Sbjct: 376 MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435

Query: 243 FGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNV 302
              S   +      Q  S+  +  I+P     + MI + G+ G    A  +      +  
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHR--IKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPT 493

Query: 303 V-LWTAMVAACFQNEYFE----EALNLFCGMEYEAIRPNEFTFAVMLN 345
           V +W A++ AC  ++  E     A  L+ GM  E +      + V+LN
Sbjct: 494 VNMWAALLTACRIHKNLELGRLAAEKLY-GMGPEKLN----NYVVLLN 536

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 68.0 bits (166), Expect = 1e-11
 Identities = 34/111 (30%), Positives = 66/111 (59%), Gaps = 4/111 (3%)

Query: 46  LKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSL 105
           L+  K  HA LI    +    ++V   +LV+LY+K  ++  AR +FD M ++N++S+++L
Sbjct: 341 LEHAKQAHAGLI---RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNAL 397

Query: 106 MTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQ 156
           +  Y ++G   + +++F+ M++ + + PN   F  VLS+C  SG   +G +
Sbjct: 398 IAGYGNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWE 447

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 59.1 bits (143), Expect = 6e-09
 Identities = 61/344 (17%), Positives = 146/344 (42%), Gaps = 14/344 (4%)

Query: 186 VEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGL 245
           V+ A R   L+    +  +N +++    ++   G + VL  +    ++ D   Y      
Sbjct: 422 VKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST 481

Query: 246 SASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNV--- 302
            A    +    +V  +M+ + +E +V    A+I    + G+ + A   +  + ++NV   
Sbjct: 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541

Query: 303 -VLWTAMVAACFQNEYFEEALNLFCGMEYEA--IRPNEFTFAVMLNSAAGLSALRHGDLL 359
            V++ A+++AC Q+   + A ++   M+ E   I P+  T   ++ + A    +     +
Sbjct: 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601

Query: 360 HAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDI----ITWNAMICGYSH 415
           +  I +   K    V    +N  ++ G+ + A  ++ DM+ + +    + ++A++    H
Sbjct: 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661

Query: 416 HGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLE 475
            G   +A  + Q+      +   V++  ++ AC +    ++    L   +K I + P + 
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL-ELYEDIKSIKLRPTVS 720

Query: 476 HYTCIVGLLSKAGLLDEAEKF---MRSTPVKWDVVAWHTLLNAS 516
               ++  L +   L +A +    M+   +  + + +  LL AS
Sbjct: 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 49.3 bits (119), Expect = 4e-08
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 98  NVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSR 147
           +VV+Y++L+  Y   G + E LKLF  M     ++PN Y +SI++    +
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSAC 448
           D++T+N +I GY   G   EAL LF  M     +PN  T+  ++   
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 46.2 bits (111), Expect = 6e-07
 Identities = 13/45 (28%), Positives = 27/45 (60%)

Query: 301 NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLN 345
           +VV +  ++    +    EEAL LF  M+   I+PN +T++++++
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 43.9 bits (105), Expect = 4e-06
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 376 NALINMYAKGGNIEAANKVFSDMRYR----DIITWNAMICGYSH 415
           N LI+ Y K G +E A K+F++M+ R    ++ T++ +I G   
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 67  NVVLTNSLVNLYAKCNQISIARQLFDNMRQR----NVVSYSSLMTWY 109
           +VV  N+L++ Y K  ++  A +LF+ M++R    NV +YS L+   
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPN 437
           +T+N +I G    G   EAL LF+ M      P+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 404 ITWNAMICGYSHHGLGREALTLFQNML 430
           +T+N++I GY   G   EAL LF+ M 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMK 27

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	709
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	99.98
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.93
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.93
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.89
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.89
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.86
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.85
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.83
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.83
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.78
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.78
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.78
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.77
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.76
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.75
PRK14574	822	hmsH outer membrane protein; Provisional	99.74
PRK14574	822	hmsH outer membrane protein; Provisional	99.71
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.71
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.67
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.65
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.59
KOG2003	840	consensus TPR repeat-containing protein [General f	99.57
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.54
KOG2076	895	consensus RNA polymerase III transcription factor	99.54
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.52
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.48
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.42
KOG2076	895	consensus RNA polymerase III transcription factor	99.41
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.4
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.38
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.38
KOG1126	638	consensus DNA-binding cell division cycle control	99.37
KOG2003	840	consensus TPR repeat-containing protein [General f	99.36
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.36
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.36
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.35
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.34
KOG1126	638	consensus DNA-binding cell division cycle control	99.34
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.33
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.31
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.31
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.3
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.3
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.29
PF13041	50	PPR_2: PPR repeat family	99.28
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.24
PF13041	50	PPR_2: PPR repeat family	99.23
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.22
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.19
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.18
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.18
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.16
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.15
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.13
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.11
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.06
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.03
PRK12370	553	invasion protein regulator; Provisional	99.03
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.02
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.01
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.97
PRK11189	296	lipoprotein NlpI; Provisional	98.93
PRK12370	553	invasion protein regulator; Provisional	98.92
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.91
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.9
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.9
KOG1129	478	consensus TPR repeat-containing protein [General f	98.89
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.88
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.86
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.86
PRK11189	296	lipoprotein NlpI; Provisional	98.84
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.81
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.79
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.78
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.77
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.77
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.74
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.72
KOG1129	478	consensus TPR repeat-containing protein [General f	98.72
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.71
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.6
KOG1125	579	consensus TPR repeat-containing protein [General f	98.58
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.57
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.57
PRK04841	903	transcriptional regulator MalT; Provisional	98.55
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.55
PF12854	34	PPR_1: PPR repeat	98.53
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.53
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.49
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.47
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.47
PRK04841	903	transcriptional regulator MalT; Provisional	98.46
PF12854	34	PPR_1: PPR repeat	98.45
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.45
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.43
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.41
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.38
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.35
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.34
KOG1125	579	consensus TPR repeat-containing protein [General f	98.32
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.31
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.3
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.3
PLN02789	320	farnesyltranstransferase	98.29
PRK15359	144	type III secretion system chaperone protein SscB;	98.27
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.27
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.25
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.23
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.18
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.17
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.17
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.13
PRK15359	144	type III secretion system chaperone protein SscB;	98.11
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.1
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.09
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.07
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.97
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.96
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.94
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.92
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.92
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.9
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.84
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.82
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.82
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.8
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.8
PLN02789	320	farnesyltranstransferase	97.79
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.79
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.74
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.72
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.71
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.65
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.61
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.56
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.56
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.55
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.5
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.47
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.47
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.36
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.36
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.36
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.32
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.32
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.32
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.3
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.3
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.27
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.26
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.24
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.17
KOG0553	304	consensus TPR repeat-containing protein [General f	97.16
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.14
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.13
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.1
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.1
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.02
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.0
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.97
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.95
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.95
KOG0553	304	consensus TPR repeat-containing protein [General f	96.94
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.93
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.92
PF13371	73	TPR_9: Tetratricopeptide repeat	96.91
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.9
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.89
PRK15331	165	chaperone protein SicA; Provisional	96.88
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	96.86
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.85
PF13431	34	TPR_17: Tetratricopeptide repeat	96.82
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.81
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	96.79
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	96.77
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.72
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.67
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.66
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	96.64
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.6
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.6
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.6
PF12688	120	TPR_5: Tetratrico peptide repeat	96.6
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.55
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.53
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.51
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.51
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.48
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.43
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.42
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.3
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.27
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.23
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.23
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.22
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.21
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.16
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.11
PF12688	120	TPR_5: Tetratrico peptide repeat	96.1
PF13428	44	TPR_14: Tetratricopeptide repeat	95.95
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.93
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.88
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.84
PRK10803	263	tol-pal system protein YbgF; Provisional	95.84
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	95.7
PRK10803	263	tol-pal system protein YbgF; Provisional	95.65
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.64
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.59
PF13371	73	TPR_9: Tetratricopeptide repeat	95.55
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.34
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.16
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	94.88
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	94.85
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.76
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	94.5
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.47
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.34
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.32
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	94.32
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.26
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	94.21
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.05
PF03704	146	BTAD: Bacterial transcriptional activator domain;	93.93
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.89
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.88
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.86
KOG4555	175	consensus TPR repeat-containing protein [Function	93.49
COG0457	291	NrfG FOG: TPR repeat [General function prediction	93.46
KOG3941	406	consensus Intermediate in Toll signal transduction	93.46
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.21
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.2
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	93.13
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.01
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.97
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.92
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.89
PRK11906	458	transcriptional regulator; Provisional	92.84
KOG3941	406	consensus Intermediate in Toll signal transduction	92.69
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	92.49
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.42
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.23
PRK11906	458	transcriptional regulator; Provisional	92.22
COG3118	304	Thioredoxin domain-containing protein [Posttransla	91.59
KOG2610	491	consensus Uncharacterized conserved protein [Funct	91.35
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	91.15
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	90.88
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	90.04
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	90.03
PRK15331	165	chaperone protein SicA; Provisional	89.9
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	89.39
PF13512	142	TPR_18: Tetratricopeptide repeat	88.94
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	88.94
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	88.91
COG4105	254	ComL DNA uptake lipoprotein [General function pred	88.88
KOG1585	308	consensus Protein required for fusion of vesicles	88.83
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	88.46
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.37
PRK09687	280	putative lyase; Provisional	87.87
KOG2610	491	consensus Uncharacterized conserved protein [Funct	87.63
PF13512	142	TPR_18: Tetratricopeptide repeat	87.53
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	87.41
COG3947	361	Response regulator containing CheY-like receiver a	87.4
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.09
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	87.04
PF13428	44	TPR_14: Tetratricopeptide repeat	86.88
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	86.86
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	86.76
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	86.6
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	86.43
KOG4555	175	consensus TPR repeat-containing protein [Function	86.33
KOG4234	271	consensus TPR repeat-containing protein [General f	86.28
COG3118	304	Thioredoxin domain-containing protein [Posttransla	86.19
COG0457	291	NrfG FOG: TPR repeat [General function prediction	85.82
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	85.82
KOG1258	577	consensus mRNA processing protein [RNA processing	85.52
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	85.51
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	85.26
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	85.1
KOG1941	518	consensus Acetylcholine receptor-associated protei	85.03
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	84.68
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	84.67
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	84.64
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	84.17
KOG4570	418	consensus Uncharacterized conserved protein [Funct	83.55
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	83.45
COG3629	280	DnrI DNA-binding transcriptional activator of the	82.97
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	82.25
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	82.24
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	82.14
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	82.04
KOG4570	418	consensus Uncharacterized conserved protein [Funct	81.74
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	81.45
KOG4648	536	consensus Uncharacterized conserved protein, conta	81.05
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	80.72
KOG4648	536	consensus Uncharacterized conserved protein, conta	80.38

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.5e-135  Score=1173.15  Aligned_cols=691  Identities=33%  Similarity=0.600  Sum_probs=678.1

Q ss_pred             ChhHHhhhchHHhhhCCCCCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHH
Q 039873            9 SPQAATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIAR   88 (709)
Q Consensus         9 ~p~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~   88 (709)
                      .+..|+..|.. |...|+.||..||+.++++|++.+++..+.++|..+.+.|+.   +|+.++|+||.+|+++|++++|+
T Consensus       167 ~~~~A~~~f~~-M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~n~Li~~y~k~g~~~~A~  242 (857)
T PLN03077        167 YFDEALCLYHR-MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE---LDVDVVNALITMYVKCGDVVSAR  242 (857)
T ss_pred             CHHHHHHHHHH-HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC---cccchHhHHHHHHhcCCCHHHHH
Confidence            45677888865 445699999999999999999999999999999999999999   99999999999999999999999


Q ss_pred             HHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCC
Q 039873           89 QLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVF  168 (709)
Q Consensus        89 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~  168 (709)
                      ++|++|++||+++||+||.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|+++.|+++|..+++.|+.|
T Consensus       243 ~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~  321 (857)
T PLN03077        243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV  321 (857)
T ss_pred             HHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence            99999999999999999999999999999999999999 89999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 039873          169 CKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSAS  248 (709)
Q Consensus       169 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~  248 (709)
                      |..+||+||++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++
T Consensus       322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~  401 (857)
T PLN03077        322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC  401 (857)
T ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 039873          249 LKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGM  328 (709)
Q Consensus       249 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  328 (709)
                      .|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|
T Consensus       402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m  481 (857)
T PLN03077        402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM  481 (857)
T ss_pred             cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHH
Q 039873          329 EYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNA  408 (709)
Q Consensus       329 ~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~  408 (709)
                      .. ++.||..||+++|.+|++.|+++.++++|..+.+.|+.+|..++|+||++|+|+|++++|.++|+.+ .+|+++||+
T Consensus       482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~  559 (857)
T PLN03077        482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNI  559 (857)
T ss_pred             Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHH
Confidence            85 6999999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC
Q 039873          409 MICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAG  488 (709)
Q Consensus       409 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  488 (709)
                      ||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|
T Consensus       560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G  639 (857)
T PLN03077        560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG  639 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999877899999999999999999999


Q ss_pred             CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          489 LLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       489 ~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ++++|.+++++|+++||..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|+.|+++|+..|+|++|.++++.|++
T Consensus       640 ~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        640 KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHhhCCcccCCccccccCchhhhhhhhcccCHHHHHH
Q 039873          569 RKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIA  648 (709)
Q Consensus       569 ~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~  648 (709)
                      +|++|+||+|||++++++|.|.+||.+||+.++||..++++..+|++.||.||+..++ ++++++|+..+++||||||+|
T Consensus       720 ~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a  798 (857)
T PLN03077        720 NGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIA  798 (857)
T ss_pred             cCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999877 558889999999999999999


Q ss_pred             hccccCCCCCcEEEEeccccccchhHHHHHHhhhcCceEEEecCCcccccccccccCCC
Q 039873          649 YALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTD  707 (709)
Q Consensus       649 ~~~~~~~~~~~~~~~~~l~~~~~~h~~~~~~s~~~~~~i~~~d~~~~h~f~~g~csc~~  707 (709)
                      ||||+|+||.||||+||||||+|||+++||||++++|||||||.+|||||++|+|||+|
T Consensus       799 ~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d  857 (857)
T PLN03077        799 FGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD  857 (857)
T ss_pred             HhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence            99999999999999999999999999999999999999999999999999999999998

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.4e-126  Score=1072.74  Aligned_cols=614  Identities=33%  Similarity=0.617  Sum_probs=605.7

Q ss_pred             CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHH
Q 039873           96 QRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNA  175 (709)
Q Consensus        96 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  175 (709)
                      .++..+|+++|.+|.+.|++++|+++|+.|....++.||..||+.++.+|++.++++.|.++|..|++.|+.||..++|.
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~  163 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR  163 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            45778999999999999999999999999983345889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHH
Q 039873          176 LVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLG  255 (709)
Q Consensus       176 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  255 (709)
                      |+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 039873          256 LQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRP  335 (709)
Q Consensus       256 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  335 (709)
                      .++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++|.+.|+.|
T Consensus       244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p  323 (697)
T PLN03081        244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI  323 (697)
T ss_pred             HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 039873          336 NEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSH  415 (709)
Q Consensus       336 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~  415 (709)
                      |..||++++.+|++.|.++.|.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++
T Consensus       324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~  403 (697)
T PLN03081        324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN  403 (697)
T ss_pred             CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 039873          416 HGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEK  495 (709)
Q Consensus       416 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  495 (709)
                      +|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+
T Consensus       404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~  483 (697)
T PLN03081        404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA  483 (697)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888999999999999999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCccCC
Q 039873          496 FMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEP  575 (709)
Q Consensus       496 ~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~  575 (709)
                      +|++++++|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.++++.|+++|+++.|
T Consensus       484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~  563 (697)
T PLN03081        484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP  563 (697)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHhhCCcccCCccccccCchhhhhhhhcccCHHHHHHhccccCC
Q 039873          576 GSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLAIAYALMETP  655 (709)
Q Consensus       576 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  655 (709)
                      |+||+++++.+|.|.+||..||+.++||+.+.++..+|++.||.||+.+++|++++++|+..+++||||||+|||||+++
T Consensus       564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~  643 (697)
T PLN03081        564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS  643 (697)
T ss_pred             CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeccccccchhHHHHHHhhhcCceEEEecCCcccccccccccCCCCC
Q 039873          656 PTAPILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQDGCCSCTDYW  709 (709)
Q Consensus       656 ~~~~~~~~~~l~~~~~~h~~~~~~s~~~~~~i~~~d~~~~h~f~~g~csc~~~~  709 (709)
                      ||.||||+||||||+|||+|+||||++++|||||||.+|||||++|+|||+|||
T Consensus       644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w  697 (697)
T PLN03081        644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW  697 (697)
T ss_pred             CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence            999999999999999999999999999999999999999999999999999999

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.1e-87  Score=772.81  Aligned_cols=668  Identities=25%  Similarity=0.356  Sum_probs=596.6

Q ss_pred             HHhhhchHHhhhCCCCCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHH
Q 039873           12 AATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLF   91 (709)
Q Consensus        12 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f   91 (709)
                      .|...+. .|...|+.|+..+|..++++|.+.+.+..|.++|..+.+.+..   +++.++|+|+++|+++|+++.|+++|
T Consensus        69 ~A~~l~~-~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~n~li~~~~~~g~~~~A~~~f  144 (857)
T PLN03077         69 QALKLLE-SMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS---LGVRLGNAMLSMFVRFGELVHAWYVF  144 (857)
T ss_pred             HHHHHHH-HHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC---CCchHHHHHHHHHHhCCChHHHHHHH
Confidence            4444443 3556788999999999999999999999999999999999998   99999999999999999999999999


Q ss_pred             hcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchh
Q 039873           92 DNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKY  171 (709)
Q Consensus        92 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~  171 (709)
                      ++|++||+++||++|.+|++.|++++|+++|++|. ..|+.||.+||+.++++|+..++++.++++|..+++.|+.||..
T Consensus       145 ~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  223 (857)
T PLN03077        145 GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD  223 (857)
T ss_pred             hcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc
Confidence            99999999999999999999999999999999999 88999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC
Q 039873          172 VRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKD  251 (709)
Q Consensus       172 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~  251 (709)
                      ++|+||++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|++.|+
T Consensus       224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~  303 (857)
T PLN03077        224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD  303 (857)
T ss_pred             hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 039873          252 LKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYE  331 (709)
Q Consensus       252 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  331 (709)
                      ++.|.++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.
T Consensus       304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~  383 (857)
T PLN03077        304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD  383 (857)
T ss_pred             hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHH
Q 039873          332 AIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMIC  411 (709)
Q Consensus       332 g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~  411 (709)
                      |+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.++|+++||+||.
T Consensus       384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~  463 (857)
T PLN03077        384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA  463 (857)
T ss_pred             CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHH
Q 039873          412 GYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLD  491 (709)
Q Consensus       412 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  491 (709)
                      +|+++|+.++|+++|++|.. +++||.+||+.+|.+|++.|.++.+.+++..+.+ .|+.++..++++||++|+++|+++
T Consensus       464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~  541 (857)
T PLN03077        464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMN  541 (857)
T ss_pred             HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHH
Confidence            99999999999999999986 5999999999999999999999999999999987 699999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC-CCCchhHHHHHHHhhhcCCchhHHHHHHHHH-hC
Q 039873          492 EAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMD-PNDVGTYILLSNMYAKEKRWDGVSKIRKLMK-VR  569 (709)
Q Consensus       492 ~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~  569 (709)
                      +|.++|+.+  .||.++|++||.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|++.|++++|.++|+.|. +.
T Consensus       542 ~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~  619 (857)
T PLN03077        542 YAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY  619 (857)
T ss_pred             HHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence            999999998  7999999999999999999999999999999865 3467899999999999999999999999999 57


Q ss_pred             CCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHhhCCcccCCccccccCchhhhhhhhcccCHHHH-HH
Q 039873          570 KVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQKEDYLNHHSEKLA-IA  648 (709)
Q Consensus       570 ~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la-~~  648 (709)
                      |+.|+... +.-       .+......++       +++..+.+++++++||..+|..-+..+..++.+- -.|+.| ..
T Consensus       620 gi~P~~~~-y~~-------lv~~l~r~G~-------~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e-~~e~~a~~l  683 (857)
T PLN03077        620 SITPNLKH-YAC-------VVDLLGRAGK-------LTEAYNFINKMPITPDPAVWGALLNACRIHRHVE-LGELAAQHI  683 (857)
T ss_pred             CCCCchHH-HHH-------HHHHHHhCCC-------HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHH
Confidence            88665421 100       0011111222       3444445556689999888765555443322110 011222 23


Q ss_pred             hccccCCCCCcEEEEeccccccchhHHHHHHhhhcCceEE-------EecCCccccccccccc
Q 039873          649 YALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDII-------VRDTNRFHRFQDGCCS  704 (709)
Q Consensus       649 ~~~~~~~~~~~~~~~~~l~~~~~~h~~~~~~s~~~~~~i~-------~~d~~~~h~f~~g~cs  704 (709)
                      +.+.+..++..+.+.+-+...|+..++.+....|..+.+-       |--.+..|-|..|--|
T Consensus       684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~  746 (857)
T PLN03077        684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES  746 (857)
T ss_pred             HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence            4555665666655556677889999999999887666321       1224678888776544

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.2e-68  Score=605.92  Aligned_cols=502  Identities=18%  Similarity=0.215  Sum_probs=467.2

Q ss_pred             CchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcch-----HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHH
Q 039873           66 ENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVS-----YSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSI  140 (709)
Q Consensus        66 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~  140 (709)
                      ++...+..++..|+++|++++|+++|++|++++...     ++.++.+|.+.|..++|+.+|+.|. .    ||..||+.
T Consensus       368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-~----pd~~Tyn~  442 (1060)
T PLN03218        368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-N----PTLSTFNM  442 (1060)
T ss_pred             CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-C----CCHHHHHH
Confidence            678889999999999999999999999999876654     4566777999999999999999997 3    99999999


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC----CCCcccHHHHHHHHHhCCC
Q 039873          141 VLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLP----GYDVFEYNSVLNGLIENEC  216 (709)
Q Consensus       141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~  216 (709)
                      +|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|.    .||+++||+||.+|++.|+
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~  522 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ  522 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence            999999999999999999999999999999999999999999999999999999998    4899999999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHH--cCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 039873          217 FRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLK--SDIEPDVFINSAMISMYGKCGKFSNAKKVF  294 (709)
Q Consensus       217 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~~  294 (709)
                      +++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+  .|+.||..+|++||.+|+++|++++|.++|
T Consensus       523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf  602 (1060)
T PLN03218        523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY  602 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987  678999999999999999999999999999


Q ss_pred             HhccC----CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 039873          295 EGLET----RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKE  370 (709)
Q Consensus       295 ~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~  370 (709)
                      ++|.+    ++.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|
T Consensus       603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p  682 (1060)
T PLN03218        603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL  682 (1060)
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            99986    46799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHhHHHhHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039873          371 HLIVGNALINMYAKGGNIEAANKVFSDMR----YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLS  446 (709)
Q Consensus       371 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~  446 (709)
                      +..+|++||++|+++|++++|.++|++|.    .||+++||+||.+|++.|++++|+++|++|...|+.||..||+.++.
T Consensus       683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~  762 (1060)
T PLN03218        683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV  762 (1060)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999995    69999999999999999999999999999999999999999999999


Q ss_pred             HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHH----hcC-------------------CHHHHHHHHHhC---
Q 039873          447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLS----KAG-------------------LLDEAEKFMRST---  500 (709)
Q Consensus       447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~---  500 (709)
                      +|++.|++++|.++|..|.+ .|+.||..+|++|++++.    +++                   ..++|..+|++|   
T Consensus       763 a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~  841 (1060)
T PLN03218        763 ASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA  841 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence            99999999999999999977 599999999999998743    333                   236788888876   


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh-cCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCccCC
Q 039873          501 PVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILH-MDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEP  575 (709)
Q Consensus       501 ~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~  575 (709)
                      ++.||..+|++++.++.+.+..+.+..+++.+.. -.+++..+|.+|++.+.+.  .++|..++++|...|+.|+.
T Consensus       842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~  915 (1060)
T PLN03218        842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV  915 (1060)
T ss_pred             CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence            7889999999999877788888888888887654 3466788999999988432  36899999999999998775

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1e-68  Score=604.98  Aligned_cols=456  Identities=21%  Similarity=0.318  Sum_probs=436.8

Q ss_pred             hhHHhhhchHHhhhCCCCCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHH
Q 039873           10 PQAATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQ   89 (709)
Q Consensus        10 p~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~   89 (709)
                      +..|+..|.++....+..||..+|+.++.+|++.++++.+.++|..+.+.|+.   ||+.++|.|+++|+++|+++.|++
T Consensus       103 ~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~---~~~~~~n~Li~~y~k~g~~~~A~~  179 (697)
T PLN03081        103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE---PDQYMMNRVLLMHVKCGMLIDARR  179 (697)
T ss_pred             HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---cchHHHHHHHHHHhcCCCHHHHHH
Confidence            45666777666555568899999999999999999999999999999999999   999999999999999999999999


Q ss_pred             HHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCc
Q 039873           90 LFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFC  169 (709)
Q Consensus        90 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~  169 (709)
                      +|++|++||+++||++|.+|++.|++++|+++|++|. +.|+.||..||+.++.+|++.|+.+.++++|..+.+.|+.+|
T Consensus       180 lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~-~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d  258 (697)
T PLN03081        180 LFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW-EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD  258 (697)
T ss_pred             HHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH-HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999999999999999999999999999 899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 039873          170 KYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASL  249 (709)
Q Consensus       170 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~  249 (709)
                      ..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.
T Consensus       259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~  338 (697)
T PLN03081        259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL  338 (697)
T ss_pred             ceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 039873          250 KDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGME  329 (709)
Q Consensus       250 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  329 (709)
                      |++++|.++|+.|.+.|+.||..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.
T Consensus       339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~  418 (697)
T PLN03081        339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI  418 (697)
T ss_pred             cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHH-hCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC-CCChhhHH
Q 039873          330 YEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEK-SGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR-YRDIITWN  407 (709)
Q Consensus       330 ~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-~~~~~~~~  407 (709)
                      +.|+.||..||+++|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++|++|. .||..+|+
T Consensus       419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~  498 (697)
T PLN03081        419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWA  498 (697)
T ss_pred             HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHH
Confidence            999999999999999999999999999999999986 6999999999999999999999999999999997 68999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC
Q 039873          408 AMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP  472 (709)
Q Consensus       408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p  472 (709)
                      +|+.+|..+|+.+.|..+++++.+  +.|+ ..+|+.+++.|++.|++++|.++++.|.+ .|+.+
T Consensus       499 ~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k  561 (697)
T PLN03081        499 ALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSM  561 (697)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence            999999999999999999999875  5665 56899999999999999999999999866 47753

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.2e-65  Score=581.57  Aligned_cols=504  Identities=12%  Similarity=0.162  Sum_probs=475.8

Q ss_pred             CCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHH
Q 039873           27 PPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLM  106 (709)
Q Consensus        27 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li  106 (709)
                      .++...|..++..|.+.|++..|.++++.|.+.|..  +++...++.++..|.+.|.+++|.++|+.|+.||..+||.+|
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv--~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL  444 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLL--DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM  444 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCC--CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence            456678999999999999999999999999999853  178889999999999999999999999999999999999999


Q ss_pred             HHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 039873          107 TWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDV  186 (709)
Q Consensus       107 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~  186 (709)
                      .+|++.|++++|+++|+.|. +.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|++||++|++.|++
T Consensus       445 ~a~~k~g~~e~A~~lf~~M~-~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~  523 (1060)
T PLN03218        445 SVCASSQDIDGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV  523 (1060)
T ss_pred             HHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence            99999999999999999999 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCC----CCcccHHHHHHHHHhCCCccHHHHHHHHHHh--CCCCCChhhHHHHHHHHhcCCCcHHHHHHHH
Q 039873          187 EMAKRLLDLLPG----YDVFEYNSVLNGLIENECFRGGVEVLGKMVS--GSVRWDSVTYVNAFGLSASLKDLKLGLQVHS  260 (709)
Q Consensus       187 ~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  260 (709)
                      ++|.++|+.|..    ||.++||.||.+|++.|++++|.++|.+|..  .|+.||..||++++.+|++.|++++|.++|+
T Consensus       524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~  603 (1060)
T PLN03218        524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ  603 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999954    7999999999999999999999999999986  6899999999999999999999999999999


Q ss_pred             HHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC----CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 039873          261 QMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET----RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN  336 (709)
Q Consensus       261 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd  336 (709)
                      .|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+    ||.++|+++|.+|++.|+.++|.++|++|.+.|+.||
T Consensus       604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd  683 (1060)
T PLN03218        604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG  683 (1060)
T ss_pred             HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999985    6999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHH
Q 039873          337 EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR----YRDIITWNAMICG  412 (709)
Q Consensus       337 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~  412 (709)
                      ..+|++++.+|++.|++++|.++|+.|.+.|+.||..+||+||++|++.|++++|.++|++|.    .||..+|+++|.+
T Consensus       684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a  763 (1060)
T PLN03218        684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA  763 (1060)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999997    5899999999999


Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c-------------------ccHHHHHHHHHHHHHhhC
Q 039873          413 YSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGH----L-------------------GLVQEGFYYLNHLMKQIG  469 (709)
Q Consensus       413 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~-------------------g~~~~a~~~~~~~~~~~~  469 (709)
                      |++.|+.++|.++|++|.+.|+.||..+|+.++..|.+    .                   +..++|..+|++|.+ .|
T Consensus       764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~G  842 (1060)
T PLN03218        764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AG  842 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CC
Confidence            99999999999999999999999999999999876542    1                   124679999999987 59


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 039873          470 IVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP---VKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMD  536 (709)
Q Consensus       470 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  536 (709)
                      +.||..+|+.++..+.+.+..+.+.++++.|+   ..|+..+|++|+.++.+.  .++|..++++|.+.+
T Consensus       843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G  910 (1060)
T PLN03218        843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG  910 (1060)
T ss_pred             CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence            99999999999999999999999999998875   456789999999998433  368999999999876

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.5e-30  Score=307.67  Aligned_cols=543  Identities=12%  Similarity=0.026  Sum_probs=285.0

Q ss_pred             ChhHHhhhchHHhhhCCCCCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHH
Q 039873            9 SPQAATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIAR   88 (709)
Q Consensus         9 ~p~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~   88 (709)
                      +...|...+.......  +.+...+..+...+...|+++.|...+..+.....    .+...++.+...|.+.|++++|.
T Consensus       310 ~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~  383 (899)
T TIGR02917       310 NLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP----DDPAALSLLGEAYLALGDFEKAA  383 (899)
T ss_pred             CHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHCCCHHHHH
Confidence            4455555555555432  22333444555555666667777666666665443    25556666666666777777777


Q ss_pred             HHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhC
Q 039873           89 QLFDNMRQ--R-NVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSG  165 (709)
Q Consensus        89 ~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g  165 (709)
                      +.|+++.+  | +...|..+...+...|++++|++.|+.+. .... .+......++..+.+.|+++.|..++..+.+..
T Consensus       384 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  461 (899)
T TIGR02917       384 EYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA-QLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ  461 (899)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH-hhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            76666543  2 33445555556666666666666666654 2211 112233344445555566666666655555432


Q ss_pred             CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHH
Q 039873          166 LVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNA  242 (709)
Q Consensus       166 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l  242 (709)
                       +.+..++..+...|...|++++|...|+++.+   .+...+..+...+...|++++|.+.|+++.+.+. .+..++..+
T Consensus       462 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l  539 (899)
T TIGR02917       462 -PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILAL  539 (899)
T ss_pred             -CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHH
Confidence             23445555555666666666666666655432   2333455555555555666666666665554321 233445555


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHh
Q 039873          243 FGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFE  319 (709)
Q Consensus       243 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~  319 (709)
                      ...+...|+.++|..++..+.+.+ +.+...+..++..|.+.|++++|..+++.+..   .+...|..+...|.+.|+++
T Consensus       540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  618 (899)
T TIGR02917       540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLN  618 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence            555555555555555555555443 33444555555555555555555555555542   23455555555555555555


Q ss_pred             HHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC
Q 039873          320 EALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR  399 (709)
Q Consensus       320 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~  399 (709)
                      +|+..|+++.+.. +.+...+..+...+...|+.++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.
T Consensus       619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  696 (899)
T TIGR02917       619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ  696 (899)
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5555555555432 1223344445555555555555555555555432 3334455555555555555555555555554


Q ss_pred             C---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHH
Q 039873          400 Y---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEH  476 (709)
Q Consensus       400 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~  476 (709)
                      .   .+...|..+...+...|++++|++.|+++...  .|+..++..+..++.+.|++++|.+.++.+.+.  .+.+...
T Consensus       697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~  772 (899)
T TIGR02917       697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVL  772 (899)
T ss_pred             hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence            2   23344555555555555555555555555552  333344444555555555555555555555432  2233445


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC
Q 039873          477 YTCIVGLLSKAGLLDEAEKFMRST-PVK-WDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK  554 (709)
Q Consensus       477 ~~~li~~~~~~g~~~~A~~~~~~~-~~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  554 (709)
                      +..+...|.+.|++++|.+.|+++ ... ++..+++.+...+...|+ .+|+..++++++..|+++..+..++.+|...|
T Consensus       773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  851 (899)
T TIGR02917       773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG  851 (899)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence            555555555555555555555433 111 234455555555555555 44555555555555555555555555555555


Q ss_pred             CchhHHHHHHHHHhC
Q 039873          555 RWDGVSKIRKLMKVR  569 (709)
Q Consensus       555 ~~~~a~~~~~~m~~~  569 (709)
                      ++++|.++++++.+.
T Consensus       852 ~~~~A~~~~~~a~~~  866 (899)
T TIGR02917       852 EADRALPLLRKAVNI  866 (899)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            555555555555543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.2e-29  Score=299.80  Aligned_cols=543  Identities=11%  Similarity=-0.008  Sum_probs=445.4

Q ss_pred             CChhHHhhhchHHhhhCCCCCC-cchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHH
Q 039873            8 TSPQAATRCAPFLFKQNRAPPS-VEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISI   86 (709)
Q Consensus         8 ~~p~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~   86 (709)
                      .+++.|...+.......   |+ ...+..+...+...|+++.|...+..+++..+.    +......+...+.+.|++++
T Consensus       275 ~~~~~A~~~~~~~l~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~  347 (899)
T TIGR02917       275 KNYEDARETLQDALKSA---PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN----SHQARRLLASIQLRLGRVDE  347 (899)
T ss_pred             cCHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHCCCHHH
Confidence            46778888887766543   22 223334444566789999999999998887543    66777888889999999999


Q ss_pred             HHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHH
Q 039873           87 ARQLFDNMRQ---RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFK  163 (709)
Q Consensus        87 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  163 (709)
                      |...++.+..   .+...|+.+...+.+.|++++|++.|+++. ... +.+...+..+...+...|+.+.|...+..+.+
T Consensus       348 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  425 (899)
T TIGR02917       348 AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKAT-ELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQ  425 (899)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            9999988764   355678888899999999999999999986 322 23556677777788889999999999999888


Q ss_pred             hCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHH
Q 039873          164 SGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYV  240 (709)
Q Consensus       164 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  240 (709)
                      .... .......++..|.+.|++++|..+++.+..   .+..+|+.+...|...|++++|.+.|+++.+... .+...+.
T Consensus       426 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~  503 (899)
T TIGR02917       426 LDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAA  503 (899)
T ss_pred             hCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHH
Confidence            7532 345566788899999999999999988764   3667899999999999999999999999887532 2345677


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCC
Q 039873          241 NAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEY  317 (709)
Q Consensus       241 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~  317 (709)
                      .+...+...|++++|.+.++.+.+.+ +.+..++..+...|.+.|+.++|...|+++..   .+...+..++..|.+.|+
T Consensus       504 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  582 (899)
T TIGR02917       504 NLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ  582 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCC
Confidence            78888889999999999999998875 56778889999999999999999999998754   356778888999999999


Q ss_pred             HhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhh
Q 039873          318 FEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSD  397 (709)
Q Consensus       318 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~  397 (709)
                      +++|+++++++.... +.+..++..+...+...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|..+|++
T Consensus       583 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  660 (899)
T TIGR02917       583 LKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKR  660 (899)
T ss_pred             HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999998643 4456778888899999999999999999998765 55677788899999999999999999998


Q ss_pred             cCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh
Q 039873          398 MRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL  474 (709)
Q Consensus       398 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~  474 (709)
                      +.+   .+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...|..+...   .|+.
T Consensus       661 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~  736 (899)
T TIGR02917       661 ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSS  736 (899)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCc
Confidence            763   457789999999999999999999999998864 456677888888889999999999999998653   4666


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873          475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVK-WDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK  552 (709)
Q Consensus       475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  552 (709)
                      ..+..++.++.+.|++++|.+.++++ ... .+..++..+...|...|+.++|.+.++++++..|+++..+..++.+|..
T Consensus       737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  816 (899)
T TIGR02917       737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE  816 (899)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            78888999999999999999987754 222 3577888888899999999999999999999999999999999999999


Q ss_pred             cCCchhHHHHHHHHHhC
Q 039873          553 EKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       553 ~g~~~~a~~~~~~m~~~  569 (709)
                      .|+ .+|..+++++.+.
T Consensus       817 ~~~-~~A~~~~~~~~~~  832 (899)
T TIGR02917       817 LKD-PRALEYAEKALKL  832 (899)
T ss_pred             cCc-HHHHHHHHHHHhh
Confidence            999 8899999988764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=99.98  E-value=8.6e-33  Score=229.90  Aligned_cols=106  Identities=61%  Similarity=1.034  Sum_probs=97.2

Q ss_pred             ceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHhhCCcccCCccccccCchhhh--------hhhhcccCHHHHH
Q 039873          576 GSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKPLGYVPDVAAVLHDVEDEQK--------EDYLNHHSEKLAI  647 (709)
Q Consensus       576 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~la~  647 (709)
                      |+||+++    |.|++||.+||+.        ++..++...||.|+.....|+++++++        +..+++||||||+
T Consensus         2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi   69 (116)
T PF14432_consen    2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI   69 (116)
T ss_pred             CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence            6899976    9999999999987        466677888999999999998887766        4588999999999


Q ss_pred             HhccccCCCCCcEEEEecc-ccccchhHHHHHHhhhcCceEEEecCCcccccc
Q 039873          648 AYALMETPPTAPILVIKNL-RMCDDCHSAVKLISKLTKRDIIVRDTNRFHRFQ  699 (709)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~l-~~~~~~h~~~~~~s~~~~~~i~~~d~~~~h~f~  699 (709)
                      ||||+++      +|+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus        70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk  116 (116)
T PF14432_consen   70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK  116 (116)
T ss_pred             Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence            9999999      899999 999999999999999999999999999999996

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.93  E-value=1.1e-20  Score=224.81  Aligned_cols=513  Identities=11%  Similarity=-0.005  Sum_probs=358.0

Q ss_pred             HHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhH-HHHHHHHHHccCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhC
Q 039873           37 LKHSADSKDLKLGKVIHAHLIITTESSRNENVVL-TNSLVNLYAKCNQISIARQLFDNMRQ--R-NVVSYSSLMTWYLHN  112 (709)
Q Consensus        37 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~  112 (709)
                      ...+...|++++|.+.+..+++....    +... ...+.......|+.++|++.|+++.+  | +...+..+...+...
T Consensus       119 A~ll~~~g~~~eA~~~~~~~l~~~p~----~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~  194 (1157)
T PRK11447        119 ARLLATTGRTEEALASYDKLFNGAPP----ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSS  194 (1157)
T ss_pred             HHHHHhCCCHHHHHHHHHHHccCCCC----ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Confidence            34567788899999988888875433    2221 11112222345888999999988875  3 344677777888888


Q ss_pred             CChhHHHHHHHHhhhCCCC------------------C--------------CChhhH---------------------H
Q 039873          113 GFLLETLKLFKNMVSGDNL------------------E--------------PNEYIF---------------------S  139 (709)
Q Consensus       113 g~~~~A~~~~~~m~~~~g~------------------~--------------p~~~t~---------------------~  139 (709)
                      |++++|+..|+++. ....                  .              |+...+                     .
T Consensus       195 g~~~eAl~~l~~~~-~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~  273 (1157)
T PRK11447        195 GRRDEGFAVLEQMA-KSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR  273 (1157)
T ss_pred             CCHHHHHHHHHHHh-hCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence            99999999888875 2210                  0              110000                     0


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc-----ccHHHH-------
Q 039873          140 IVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDV-----FEYNSV-------  207 (709)
Q Consensus       140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-----~~~~~l-------  207 (709)
                      .....+...|++++|...+..+++.. +.+..++..|...|.+.|+.++|+..|++..+.+.     ..|..+       
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~  352 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW  352 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence            11123445677777777777777764 23566677777777788888888877776543211     122222       


Q ss_pred             -----HHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 039873          208 -----LNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYG  282 (709)
Q Consensus       208 -----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~  282 (709)
                           ...+.+.|++++|+..|++..+... .+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|.
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR  430 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence                 2345677788888888887776532 234455666677777788888888887777654 334555666666664


Q ss_pred             hcCChHHHHHHHHhccCCC------------HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-ccchHHHHHHHhc
Q 039873          283 KCGKFSNAKKVFEGLETRN------------VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN-EFTFAVMLNSAAG  349 (709)
Q Consensus       283 ~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~  349 (709)
                       .++.++|..+++.+....            ...+..+...+...|++++|++.|++..+.  .|+ ...+..+...+..
T Consensus       431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~  507 (1157)
T PRK11447        431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQ  507 (1157)
T ss_pred             -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence             356777777777665321            123444566777889999999999998874  454 3455667778889


Q ss_pred             cCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCC----Ch---------hhHHHHHHHHHHc
Q 039873          350 LSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYR----DI---------ITWNAMICGYSHH  416 (709)
Q Consensus       350 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----~~---------~~~~~li~~~~~~  416 (709)
                      .|+.++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+...    +.         ..+..+...+...
T Consensus       508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~  586 (1157)
T PRK11447        508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS  586 (1157)
T ss_pred             cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence            999999999999988754 344555555566677889999999999887632    11         1123456678889


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 039873          417 GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF  496 (709)
Q Consensus       417 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  496 (709)
                      |+.++|+++++.     .+++...+..+...+.+.|++++|+..|+.+.+.  -+.+...+..++.+|...|++++|++.
T Consensus       587 G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~  659 (1157)
T PRK11447        587 GKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQ  659 (1157)
T ss_pred             CCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999872     2445556777888899999999999999998763  233467889999999999999999999


Q ss_pred             HHhCC-CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc------hhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          497 MRSTP-VKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV------GTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       497 ~~~~~-~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ++... ..|+ ...+..+..++...|++++|.++++++++..|+++      ..+..++.++...|++++|.+.++....
T Consensus       660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            98653 3454 66677788888999999999999999998776543      3566778999999999999999998864

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.93  E-value=7.5e-21  Score=226.12  Aligned_cols=520  Identities=11%  Similarity=0.047  Sum_probs=281.3

Q ss_pred             HHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC--CCcch-H-------
Q 039873           33 TLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQ--RNVVS-Y-------  102 (709)
Q Consensus        33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~-~-------  102 (709)
                      .....+.+-..++.+.|.+.+..+....+.    |+.+...+...+.+.|+.++|.+.+++..+  |+... +       
T Consensus        31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~----~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~  106 (1157)
T PRK11447         31 LLEQVRLGEATHREDLVRQSLYRLELIDPN----NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTML  106 (1157)
T ss_pred             HHHHHHHHHhhCChHHHHHHHHHHHccCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            444556666788888888888887776543    677788888888888999999888888764  33221 1       


Q ss_pred             ---------HHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhh-HHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhH
Q 039873          103 ---------SSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYI-FSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYV  172 (709)
Q Consensus       103 ---------~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~  172 (709)
                               -.+...+.+.|++++|+..|+... . +-+|+... ...........++.++|...++.+++.. +.+...
T Consensus       107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l-~-~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~  183 (1157)
T PRK11447        107 LSTPEGRQALQQARLLATTGRTEEALASYDKLF-N-GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGL  183 (1157)
T ss_pred             hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHc-c-CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHH
Confidence                     222335778888999999888886 2 23333221 1111122234578888888888888875 335667


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCCCCc------ccH-----------------HHHHHHHHhCCCccHHHHHHHHHHh
Q 039873          173 RNALVELYTKCLDVEMAKRLLDLLPGYDV------FEY-----------------NSVLNGLIENECFRGGVEVLGKMVS  229 (709)
Q Consensus       173 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~  229 (709)
                      ...+...+...|+.++|...|+++.....      ..|                 ...+..+-.....+.|...+.++..
T Consensus       184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~  263 (1157)
T PRK11447        184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK  263 (1157)
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence            77888888888888888888887643211      011                 0000000011111222233322222


Q ss_pred             CCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC--CC---Hhh
Q 039873          230 GSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET--RN---VVL  304 (709)
Q Consensus       230 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~---~~~  304 (709)
                      ....|+... .....++...|++++|...++..++.. +.+..++..|...|.+.|+.++|+..|++..+  |+   ...
T Consensus       264 ~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~  341 (1157)
T PRK11447        264 QLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK  341 (1157)
T ss_pred             hccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence            111121111 111223334455555555555555432 23444455555555555555555555554432  11   111


Q ss_pred             HHHH------------HHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCCh
Q 039873          305 WTAM------------VAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHL  372 (709)
Q Consensus       305 ~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~  372 (709)
                      |..+            ...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+++.. +.+.
T Consensus       342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~  419 (1157)
T PRK11447        342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNT  419 (1157)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence            2111            123344555555555555554431 1122233334444455555555555555554432 2222


Q ss_pred             hHHh------------------------------------------HHHhHHHhcCCHHHHHHHHhhcCC--C-ChhhHH
Q 039873          373 IVGN------------------------------------------ALINMYAKGGNIEAANKVFSDMRY--R-DIITWN  407 (709)
Q Consensus       373 ~~~~------------------------------------------~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~  407 (709)
                      ..+.                                          .+...|...|++++|.+.|++..+  | +...+.
T Consensus       420 ~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~  499 (1157)
T PRK11447        420 NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY  499 (1157)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            2233                                          334445555666666666665542  2 333455


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh---------HHH
Q 039873          408 AMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL---------EHY  477 (709)
Q Consensus       408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~  477 (709)
                      .+...|.+.|++++|...|+++.+.  .|+ ...+..+...+...++.++|...++.+... ...++.         ..+
T Consensus       500 ~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~  576 (1157)
T PRK11447        500 RLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQV  576 (1157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHH
Confidence            5555666666666666666665542  232 222222223344555666666655543210 111110         112


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCch
Q 039873          478 TCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWD  557 (709)
Q Consensus       478 ~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  557 (709)
                      ..+.+.+...|+.++|.++++..+  ++...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|+++
T Consensus       577 l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~  654 (1157)
T PRK11447        577 LETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLA  654 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            234455666777777777776433  334555667777777888888888888888888888788888888888888888


Q ss_pred             hHHHHHHHHHh
Q 039873          558 GVSKIRKLMKV  568 (709)
Q Consensus       558 ~a~~~~~~m~~  568 (709)
                      +|.+.++...+
T Consensus       655 eA~~~l~~ll~  665 (1157)
T PRK11447        655 AARAQLAKLPA  665 (1157)
T ss_pred             HHHHHHHHHhc
Confidence            88888876654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.89  E-value=6.4e-18  Score=192.10  Aligned_cols=533  Identities=9%  Similarity=-0.045  Sum_probs=341.7

Q ss_pred             hHHhhhchHHhhhCCCCCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHH
Q 039873           11 QAATRCAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQL   90 (709)
Q Consensus        11 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~   90 (709)
                      +.|+..+.......+  -+...+..|.+.+...|+.++|.......++..+.    |...+..+..    .++.++|..+
T Consensus        61 ~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~----n~~~~~~La~----i~~~~kA~~~  130 (987)
T PRK09782         61 ATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG----DARLERSLAA----IPVEVKSVTT  130 (987)
T ss_pred             HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc----cHHHHHHHHH----hccChhHHHH
Confidence            344444444444321  12344555555666666666666666666554322    4444443311    1556666666


Q ss_pred             HhcCCC--CC-cchHHHHHHH--------HHhCCChhHHHHHHHHhhhCCCCCCChhhHHHH-HHHHhcCCCchHHHHHH
Q 039873           91 FDNMRQ--RN-VVSYSSLMTW--------YLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIV-LSSCSRSGRGAEGRQCH  158 (709)
Q Consensus        91 f~~~~~--~~-~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~  158 (709)
                      ++++..  |+ ...+..+...        |.+.+...++++    .. .....|+..+.... .+.+...++++.+..++
T Consensus       131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr-~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL  205 (987)
T PRK09782        131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DA-TFAASPEGKTLRTDLLQRAIYLKQWSQADTLY  205 (987)
T ss_pred             HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----Hh-hhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            666542  22 2222222222        444433333333    22 22234445545555 77788888888899999


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHh-cCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCC-CCh
Q 039873          159 GYVFKSGLVFCKYVRNALVELYTK-CLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVR-WDS  236 (709)
Q Consensus       159 ~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~  236 (709)
                      ..+.+.+.. +......|-.+|.. .++ +.|..+++.....|...+..+...|.+.|+.++|..+++++...-.. |+.
T Consensus       206 ~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~  283 (987)
T PRK09782        206 NEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE  283 (987)
T ss_pred             HHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence            988888743 34446666667777 466 88888877655568888999999999999999999999988653222 322


Q ss_pred             hhHHHH------------------------------HHHHhcCCCcHHHHHHH---------------------------
Q 039873          237 VTYVNA------------------------------FGLSASLKDLKLGLQVH---------------------------  259 (709)
Q Consensus       237 ~t~~~l------------------------------l~~~~~~~~~~~a~~~~---------------------------  259 (709)
                      .++.-+                              +..+.+.++++.+.++.                           
T Consensus       284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  363 (987)
T PRK09782        284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR  363 (987)
T ss_pred             HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence            222222                              22223333333333321                           


Q ss_pred             --HHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC-C-----CHhhHHHHHHHHHHcCC---HhHHHHH----
Q 039873          260 --SQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET-R-----NVVLWTAMVAACFQNEY---FEEALNL----  324 (709)
Q Consensus       260 --~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~-----~~~~~~~li~~~~~~g~---~~~A~~~----  324 (709)
                        ..+.+.. +-+....--+.-...+.|+.++|.++|++.-. +     +...-+-++..|.+++.   ..++..+    
T Consensus       364 ~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~  442 (987)
T PRK09782        364 LARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL  442 (987)
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence              1111110 11222222333344567888888888887654 1     23344466777777665   3333333    


Q ss_pred             --------HH----------HHHh-CCCCCC---ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHH
Q 039873          325 --------FC----------GMEY-EAIRPN---EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMY  382 (709)
Q Consensus       325 --------~~----------~m~~-~g~~pd---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y  382 (709)
                              ..          .... .+..|+   ...+..+..++.. +..++|...+.......  |+......+...+
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al  519 (987)
T PRK09782        443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQA  519 (987)
T ss_pred             ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHH
Confidence                    11          1111 112233   3334444444444 78888888777776653  4544444445555


Q ss_pred             HhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHH
Q 039873          383 AKGGNIEAANKVFSDMRY--RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFY  459 (709)
Q Consensus       383 ~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~  459 (709)
                      ...|++++|...|+++..  ++...+..+...+.+.|+.++|...|++..+..  |+.. .+..+.......|++++|..
T Consensus       520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~  597 (987)
T PRK09782        520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALN  597 (987)
T ss_pred             HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHH
Confidence            789999999999997763  455567778888999999999999999998853  5443 33344445556799999999


Q ss_pred             HHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 039873          460 YLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDP  537 (709)
Q Consensus       460 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  537 (709)
                      .++...+   ..|+...+..+..++.+.|+.++|++.+++. ...|+ ...+..+..++...|+.++|+..++++++.+|
T Consensus       598 ~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P  674 (987)
T PRK09782        598 DLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP  674 (987)
T ss_pred             HHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            9999865   4577888999999999999999999998754 45666 67778888899999999999999999999999


Q ss_pred             CCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          538 NDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       538 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      +++..+..++.+|...|++++|...+++..+.
T Consensus       675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l  706 (987)
T PRK09782        675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDD  706 (987)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999998764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=2.6e-19  Score=180.20  Aligned_cols=449  Identities=12%  Similarity=0.039  Sum_probs=353.3

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 039873          103 SSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTK  182 (709)
Q Consensus       103 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~  182 (709)
                      ..|..-..+.|++.+|.+.-...- .. -+.+..+...+-..+.+..+++...+--...++.. ..-..+|+.+.+.+-.
T Consensus        52 l~lah~~yq~gd~~~a~~h~nmv~-~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke  128 (966)
T KOG4626|consen   52 LELAHRLYQGGDYKQAEKHCNMVG-QE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE  128 (966)
T ss_pred             HHHHHHHHhccCHHHHHHHHhHhh-cc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence            344455667889988887655443 11 11222222223333444445554444333333332 2345678889999999


Q ss_pred             cCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhH-HHHHHHHhcCCCcHHHHHH
Q 039873          183 CLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTY-VNAFGLSASLKDLKLGLQV  258 (709)
Q Consensus       183 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~  258 (709)
                      .|++++|...++.+.+   ..+..|..+..++...|+.+.|.+.|.+.++  +.|+.+.. +.+-......|++++|..-
T Consensus       129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~c  206 (966)
T KOG4626|consen  129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKAC  206 (966)
T ss_pred             hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHH
Confidence            9999999999998765   3567899999999999999999999999876  46765543 3333444567899999998


Q ss_pred             HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCC---HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 039873          259 HSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRN---VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRP  335 (709)
Q Consensus       259 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  335 (709)
                      +-..++.. +.-..+|+.|...+-..|++..|+.-|++...-|   ...|-.|...|...+.+++|+..|.+....  .|
T Consensus       207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp  283 (966)
T KOG4626|consen  207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP  283 (966)
T ss_pred             HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence            88888764 3345688999999999999999999999987644   467888889999999999999999887754  56


Q ss_pred             Cc-cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHH
Q 039873          336 NE-FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-DIITWNAMIC  411 (709)
Q Consensus       336 d~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~  411 (709)
                      +. +.+..+...|...|.++.|...+++.++.. +.-...|+.|.+++-..|++.+|.+.|.+...  | ...+.+.|..
T Consensus       284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn  362 (966)
T KOG4626|consen  284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN  362 (966)
T ss_pred             cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence            54 567777777889999999999999998864 44567899999999999999999999998763  3 4568899999


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCC
Q 039873          412 GYSHHGLGREALTLFQNMLAAEERPNH-VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGL  489 (709)
Q Consensus       412 ~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~  489 (709)
                      .|...|..++|..+|....+  +.|.- ..++.|...+-+.|++++|+..+++.+   .+.|+ ...|+.|...|-..|+
T Consensus       363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~  437 (966)
T KOG4626|consen  363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD  437 (966)
T ss_pred             HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence            99999999999999999988  77874 478899999999999999999999874   57787 5689999999999999


Q ss_pred             HHHHHHHHH-hCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHH
Q 039873          490 LDEAEKFMR-STPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKL  565 (709)
Q Consensus       490 ~~~A~~~~~-~~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  565 (709)
                      .++|...+. .+.+.|. ....+.|.+.+...|+..+|++.++..++++|+.+.+|..++..+.-..+|.+--+.+++
T Consensus       438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k  515 (966)
T KOG4626|consen  438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK  515 (966)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence            999999876 4567777 778899999999999999999999999999999999999999888877788774433333

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.86  E-value=3.7e-19  Score=179.17  Aligned_cols=417  Identities=12%  Similarity=0.105  Sum_probs=333.7

Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCC
Q 039873          140 IVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENEC  216 (709)
Q Consensus       140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~  216 (709)
                      .+..-..+.|++++|++--..+-+.. +.+....-.+-..|.++.+.+....--.....   .-..+|..+...+-..|+
T Consensus        53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~  131 (966)
T KOG4626|consen   53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ  131 (966)
T ss_pred             HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence            34444556788888877544443332 12222222233556666666544332222222   234578889999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhcCChHHHHHHH
Q 039873          217 FRGGVEVLGKMVSGSVRWD-SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVF-INSAMISMYGKCGKFSNAKKVF  294 (709)
Q Consensus       217 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~  294 (709)
                      .++|+.+++.|++.  +|+ ...|..+..++...|+.+.|.+.+.+.++.  .|+.. +.+.+....-..|++++|...+
T Consensus       132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY  207 (966)
T KOG4626|consen  132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY  207 (966)
T ss_pred             HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence            99999999999985  554 558999999999999999999999998876  45543 4445566666789999999999


Q ss_pred             HhccCCC---HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCc-cchHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 039873          295 EGLETRN---VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNE-FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKE  370 (709)
Q Consensus       295 ~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~  370 (709)
                      .+..+.+   .+.|+.|...+-.+|+...|+.-|++...  +.|+. ..|..+-..+...+.++.|...+..+.... +.
T Consensus       208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn  284 (966)
T KOG4626|consen  208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN  284 (966)
T ss_pred             HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence            8866533   47899999999999999999999999875  35653 457777778888888888888887776643 44


Q ss_pred             ChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 039873          371 HLIVGNALINMYAKGGNIEAANKVFSDMRY--RD-IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNH-VTFVGVLS  446 (709)
Q Consensus       371 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~  446 (709)
                      ...++..|...|-..|.++-|.+.|++..+  |+ ...||.|..++-..|++.+|...|.+...  +.|+. .+.+.|..
T Consensus       285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn  362 (966)
T KOG4626|consen  285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN  362 (966)
T ss_pred             chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence            567788888899999999999999999874  44 46999999999999999999999999988  67774 48899999


Q ss_pred             HHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCch
Q 039873          447 ACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRS-TPVKWD-VVAWHTLLNASRVHQNYG  523 (709)
Q Consensus       447 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~pd-~~~~~~ll~~~~~~g~~~  523 (709)
                      .+...|.+++|..+|....   .+.|. ....+.|...|-..|++++|...+++ +.++|+ ..+++.+...|...|+..
T Consensus       363 i~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~  439 (966)
T KOG4626|consen  363 IYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS  439 (966)
T ss_pred             HHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence            9999999999999999874   45666 45788999999999999999999874 577888 788999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          524 FGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       524 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      .|.+.+.+++.++|.-+.++..|+.+|-.+|+..+|+.-++....-
T Consensus       440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl  485 (966)
T KOG4626|consen  440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL  485 (966)
T ss_pred             HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999999988763

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.85  E-value=2.9e-16  Score=178.68  Aligned_cols=516  Identities=9%  Similarity=-0.035  Sum_probs=366.8

Q ss_pred             CcchHHHH-HHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc-cCChHHHHHHHhcCCCCCcchHHHHH
Q 039873           29 SVEDTLKL-LKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAK-CNQISIARQLFDNMRQRNVVSYSSLM  106 (709)
Q Consensus        29 ~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~f~~~~~~~~~~~~~li  106 (709)
                      ++.+.... .+.+...++++.+..++..+.+.+..    +......|-.+|.. .++ +.|..++....+.|...+..+.
T Consensus       180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl----~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala  254 (987)
T PRK09782        180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL----SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYA  254 (987)
T ss_pred             CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHH
Confidence            34444444 77788888999999999999888754    45556667777877 466 8888887765556788888999


Q ss_pred             HHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCch-HHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcC
Q 039873          107 TWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGA-EGRQCHGYVFKSGLVFC-KYVRNALVELYTKCL  184 (709)
Q Consensus       107 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g  184 (709)
                      ..|.+.|+.++|..+++++....--.|+..++..++.   +.+... .+..-+..  +  +.++ ....-.++..+.+.+
T Consensus       255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~---r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~  327 (987)
T PRK09782        255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS---KYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEG  327 (987)
T ss_pred             HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH---hccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999988622222366665555543   333322 11111111  0  1111 123344578899999


Q ss_pred             ChHHHHHHHhhCCCCCcccHHHHHHH--HHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHH
Q 039873          185 DVEMAKRLLDLLPGYDVFEYNSVLNG--LIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQM  262 (709)
Q Consensus       185 ~~~~A~~~f~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  262 (709)
                      .++.|+++.+. ...+..   ..+..  ....+...++...++.|.+... -+......+--.....|+.++|.+++...
T Consensus       328 ~~~~~~~~~~~-~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~  402 (987)
T PRK09782        328 QYDAAQKLLAT-LPANEM---LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQR  402 (987)
T ss_pred             HHHHHHHHhcC-CCcchH---HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence            99988887552 222332   22222  2234667777777777766421 13333333333456788999999999988


Q ss_pred             HHc-C-CCCchHHHHHHHHHHHhcCC---hHHHHHH-------------------------HHhccC---C--CHhhHHH
Q 039873          263 LKS-D-IEPDVFINSAMISMYGKCGK---FSNAKKV-------------------------FEGLET---R--NVVLWTA  307 (709)
Q Consensus       263 ~~~-g-~~~~~~~~~~li~~y~~~g~---~~~A~~~-------------------------~~~m~~---~--~~~~~~~  307 (709)
                      ... + -..+....+-|+..|.+.+.   ..++..+                         +.....   .  +...|..
T Consensus       403 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~  482 (987)
T PRK09782        403 YPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNR  482 (987)
T ss_pred             cCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHH
Confidence            763 1 22345566688888888876   2333222                         111111   2  5667788


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCC
Q 039873          308 MVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGN  387 (709)
Q Consensus       308 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~  387 (709)
                      +..++.. ++.++|+..|.+....  .|+......+..++...|+++.|...+..+...  +|+...+..+...+.+.|+
T Consensus       483 LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd  557 (987)
T PRK09782        483 LAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGN  557 (987)
T ss_pred             HHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCC
Confidence            8877776 8899999988887764  366554444445556899999999999987654  4444556677888999999


Q ss_pred             HHHHHHHHhhcCCCChhhHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 039873          388 IEAANKVFSDMRYRDIITWNAM---ICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHL  464 (709)
Q Consensus       388 ~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~  464 (709)
                      .++|...|++..+.+...++..   ...+...|++++|+..|++..+  +.|+...+..+..++.+.|++++|...++..
T Consensus       558 ~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~A  635 (987)
T PRK09782        558 GAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAA  635 (987)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999998875443333333   3334455999999999999998  5788888999999999999999999999998


Q ss_pred             HHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch
Q 039873          465 MKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG  541 (709)
Q Consensus       465 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  541 (709)
                      ..   ..| +...++.+...+...|++++|++.+++. ...|+ ...+..+..++...|++++|+..++++++++|++..
T Consensus       636 L~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~  712 (987)
T PRK09782        636 LE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL  712 (987)
T ss_pred             HH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence            65   344 4567888889999999999999998854 44565 788999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873          542 TYILLSNMYAKEKRWDGVSKIRKLMKVRKV  571 (709)
Q Consensus       542 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  571 (709)
                      +.....++.....+++.+.+-+++.-..++
T Consensus       713 i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~  742 (987)
T PRK09782        713 ITPLTPEQNQQRFNFRRLHEEVGRRWTFSF  742 (987)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            999999999999999999988887765544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.83  E-value=3e-18  Score=181.80  Aligned_cols=306  Identities=12%  Similarity=0.078  Sum_probs=178.2

Q ss_pred             HHHHhCCChhHHHHHHHHhhhCCCCCC-ChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHh
Q 039873          107 TWYLHNGFLLETLKLFKNMVSGDNLEP-NEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFC---KYVRNALVELYTK  182 (709)
Q Consensus       107 ~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~  182 (709)
                      ..+...|++++|+..|.++. ..  .| +..++..+...+...|+++.|..+++.+++.+..++   ..++..+...|.+
T Consensus        43 ~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~  119 (389)
T PRK11788         43 LNFLLNEQPDKAIDLFIEML-KV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK  119 (389)
T ss_pred             HHHHhcCChHHHHHHHHHHH-hc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            34556677777777777776 32  23 344566666666677777777777766665432211   1344555555555


Q ss_pred             cCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHH
Q 039873          183 CLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVH  259 (709)
Q Consensus       183 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  259 (709)
                      .|++++|..+|+++.+   .+..+++.++..+.+.|++++|++.|+++.+.+..++...                     
T Consensus       120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------  178 (389)
T PRK11788        120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------  178 (389)
T ss_pred             CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence            5555555555555543   2334455555555555555555555555544322211100                     


Q ss_pred             HHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 039873          260 SQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN  336 (709)
Q Consensus       260 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd  336 (709)
                                ....+..+...|.+.|++++|...|+++.+   .+...+..+...|.+.|++++|+++|+++...+....
T Consensus       179 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  248 (389)
T PRK11788        179 ----------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL  248 (389)
T ss_pred             ----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence                      011233455556666666666666666543   2344566666667777777777777777665422111


Q ss_pred             ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHH
Q 039873          337 EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR--YRDIITWNAMICGYS  414 (709)
Q Consensus       337 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~  414 (709)
                      ..++..+..++...|++++|...+..+.+..  |+..++..++..|.+.|++++|..+|+++.  .|+..+++.++..+.
T Consensus       249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~  326 (389)
T PRK11788        249 SEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL  326 (389)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence            2345555666666666666666666665542  444455667777777788888888777655  367777777776665


Q ss_pred             H---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccH
Q 039873          415 H---HGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLV  454 (709)
Q Consensus       415 ~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~  454 (709)
                      .   +|+.++++.+|++|.+.+++|+..      ..|.+.|..
T Consensus       327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~  363 (389)
T PRK11788        327 AEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT  363 (389)
T ss_pred             hccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence            4   457778888888888777666655      346666544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.83  E-value=5.1e-18  Score=180.01  Aligned_cols=288  Identities=13%  Similarity=0.036  Sum_probs=181.3

Q ss_pred             HhcCChHHHHHHHHhccCC---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC---ccchHHHHHHHhccCChhH
Q 039873          282 GKCGKFSNAKKVFEGLETR---NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN---EFTFAVMLNSAAGLSALRH  355 (709)
Q Consensus       282 ~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~~~~~~  355 (709)
                      ...|++++|...|+++.+.   +..+|..+...+...|++++|+.+++.+...+..++   ..++..+...+...|+++.
T Consensus        46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~  125 (389)
T PRK11788         46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR  125 (389)
T ss_pred             HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            3444555555555554421   233444455555555555555555555544321111   1233444444555555555


Q ss_pred             HHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCC--------hhhHHHHHHHHHHcCChHHHHHHHH
Q 039873          356 GDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRD--------IITWNAMICGYSHHGLGREALTLFQ  427 (709)
Q Consensus       356 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~  427 (709)
                      |..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+        ...|..+...+.+.|++++|.+.|+
T Consensus       126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  204 (389)
T PRK11788        126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK  204 (389)
T ss_pred             HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            555555554432 3344556666666666666666666666654211        1134556667777788888888888


Q ss_pred             HHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 039873          428 NMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG--LEHYTCIVGLLSKAGLLDEAEKFMRST-PVK  503 (709)
Q Consensus       428 ~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~  503 (709)
                      ++.+.  .|+ ..++..+...+.+.|++++|.++++.+.+.   .|+  ...++.++.+|.+.|++++|.+.++++ ...
T Consensus       205 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~  279 (389)
T PRK11788        205 KALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY  279 (389)
T ss_pred             HHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            87763  343 446666667777888888888888877653   233  345677888888888888888887754 335


Q ss_pred             CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh---cCCchhHHHHHHHHHhCCCccCCc
Q 039873          504 WDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK---EKRWDGVSKIRKLMKVRKVKKEPG  576 (709)
Q Consensus       504 pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~  576 (709)
                      |+...+..+...+.+.|++++|..+++++++..|++. .+..++..+..   .|+.+++..+++.|.+++++++|.
T Consensus       280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            6766667778888888888999998888888888764 56666665543   558889999999998888888885

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.82  E-value=1.6e-16  Score=177.57  Aligned_cols=249  Identities=12%  Similarity=0.007  Sum_probs=190.1

Q ss_pred             cCCHhHHHHHHHHHHhCC-CCCC-ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHH
Q 039873          315 NEYFEEALNLFCGMEYEA-IRPN-EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAAN  392 (709)
Q Consensus       315 ~g~~~~A~~~~~~m~~~g-~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~  392 (709)
                      .+++++|++.|++....+ ..|+ ...+..+...+...|+++.|...+..+++.. +.+...+..+...|...|++++|.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~  385 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE  385 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence            467788888888877654 2333 2345555556667788888888888877653 334556777888888889999999


Q ss_pred             HHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhh
Q 039873          393 KVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQI  468 (709)
Q Consensus       393 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~  468 (709)
                      ..|++..+   .+...|..+...|...|++++|+..|++...  +.|+ ...+..+...+.+.|++++|...|+...+. 
T Consensus       386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-  462 (615)
T TIGR00990       386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-  462 (615)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence            98887653   3567888888899999999999999999888  4564 456777778888899999999999988653 


Q ss_pred             CCCCChHHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCH-H-------HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873          469 GIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS-TPVKWDV-V-------AWHTLLNASRVHQNYGFGRRIAEYILHMDPND  539 (709)
Q Consensus       469 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~pd~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  539 (709)
                       .+.+...++.+..+|...|++++|.+.|++ ..+.|+. .       .++..+..+...|++++|+++++++++++|++
T Consensus       463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~  541 (615)
T TIGR00990       463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC  541 (615)
T ss_pred             -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence             233466888899999999999999998875 3333431 1       12222223445699999999999999999999


Q ss_pred             chhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          540 VGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       540 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ...+..++.+|...|++++|.+.+++..+
T Consensus       542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~  570 (615)
T TIGR00990       542 DIAVATMAQLLLQQGDVDEALKLFERAAE  570 (615)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            88999999999999999999999999875

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.78  E-value=8.8e-15  Score=166.68  Aligned_cols=389  Identities=11%  Similarity=-0.003  Sum_probs=202.6

Q ss_pred             HHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHhCCCccHH
Q 039873          144 SCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLP---GYDVFEYNSVLNGLIENECFRGG  220 (709)
Q Consensus       144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A  220 (709)
                      .....|+.++|.+++....... ..+...+..+...+.+.|++++|..+|++..   ..+...+..+...+...|++++|
T Consensus        24 ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA  102 (765)
T PRK10049         24 IALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEA  102 (765)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            3344455555555554444321 2233345555555555555555555555532   22344455566666666666666


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 039873          221 VEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETR  300 (709)
Q Consensus       221 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~  300 (709)
                      +..+++..+.  .|+...+..+..++...|+.++|...++.+++.. +.+..++..+..++.+.|..+.|...++.... 
T Consensus       103 ~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-  178 (765)
T PRK10049        103 LVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-  178 (765)
T ss_pred             HHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-
Confidence            6666666654  2322225555556666677777777776666653 33455555666677777777777777776654 


Q ss_pred             CHh--------hHHHHHHHH-----HHcCCH---hHHHHHHHHHHhC-CCCCCcc-chHH----HHHHHhccCChhHHHH
Q 039873          301 NVV--------LWTAMVAAC-----FQNEYF---EEALNLFCGMEYE-AIRPNEF-TFAV----MLNSAAGLSALRHGDL  358 (709)
Q Consensus       301 ~~~--------~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~pd~~-t~~~----ll~~~~~~~~~~~a~~  358 (709)
                      ++.        ....++..+     ...+++   ++|++.++.+.+. ...|+.. .+..    .+.++...++.++|..
T Consensus       179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~  258 (765)
T PRK10049        179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS  258 (765)
T ss_pred             CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            211        111111111     112223   6677777777643 2223221 1111    1233345566666776


Q ss_pred             HHHHHHHhCCC-CChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 039873          359 LHAHIEKSGFK-EHLIVGNALINMYAKGGNIEAANKVFSDMRYRD-------IITWNAMICGYSHHGLGREALTLFQNML  430 (709)
Q Consensus       359 i~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~  430 (709)
                      .++.+.+.+-+ |+ .....+...|...|++++|...|+++...+       ...+..+..++.+.|++++|+++++++.
T Consensus       259 ~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~  337 (765)
T PRK10049        259 EYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI  337 (765)
T ss_pred             HHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence            66666665421 11 111224556666677777777666654221       1234445556666677777777776666


Q ss_pred             HCC-----------CCCCH---HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 039873          431 AAE-----------ERPNH---VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF  496 (709)
Q Consensus       431 ~~g-----------~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  496 (709)
                      ...           -.|+.   ..+..+...+...|++++|.+.++.+...  .+.+...+..+..++.+.|++++|++.
T Consensus       338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~  415 (765)
T PRK10049        338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENE  415 (765)
T ss_pred             hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            531           01221   12233444555556666666666665442  222344555566666666666666666


Q ss_pred             HHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873          497 MRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV  540 (709)
Q Consensus       497 ~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  540 (709)
                      +++. ...|| ...+..+.......|++++|+.+++++++..|+++
T Consensus       416 l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~  461 (765)
T PRK10049        416 LKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP  461 (765)
T ss_pred             HHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence            5532 23444 34444444455555666666666666666666554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.78  E-value=2e-15  Score=168.23  Aligned_cols=350  Identities=12%  Similarity=-0.011  Sum_probs=269.7

Q ss_pred             hcCChHHHHHHHhhCCCC------CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHH
Q 039873          182 KCLDVEMAKRLLDLLPGY------DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLG  255 (709)
Q Consensus       182 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  255 (709)
                      +..+++.-.-+|..-++.      +......++..+.+.|++++|+.+++..+.....+.. .+..++.+....|+++.|
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A   95 (656)
T PRK15174         17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAV   95 (656)
T ss_pred             hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHH
Confidence            444555555555554442      2334455677888999999999999999886544433 344444566679999999


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 039873          256 LQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEA  332 (709)
Q Consensus       256 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  332 (709)
                      .+.++.+++.. +.+...+..+...|.+.|+.++|...|++...   .+...|..+...+.+.|++++|...++++....
T Consensus        96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~  174 (656)
T PRK15174         96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV  174 (656)
T ss_pred             HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence            99999998875 55677888889999999999999999998764   356788889999999999999999999887643


Q ss_pred             CCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHH
Q 039873          333 IRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAM  409 (709)
Q Consensus       333 ~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~l  409 (709)
                        |+.......+..+...|++++|...+..+.+..-.++......+...+.+.|+.++|...|++...   .+...+..+
T Consensus       175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L  252 (656)
T PRK15174        175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL  252 (656)
T ss_pred             --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence              333322222344778899999999999887764334444555667788999999999999998763   356788889


Q ss_pred             HHHHHHcCChHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHH
Q 039873          410 ICGYSHHGLGRE----ALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGL  483 (709)
Q Consensus       410 i~~~~~~g~~~~----A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~  483 (709)
                      ...|.+.|++++    |+..|++..+  +.|+ ...+..+...+...|++++|...++...+.   .|+ ...+..+..+
T Consensus       253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~  327 (656)
T PRK15174        253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARA  327 (656)
T ss_pred             HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence            999999999986    8999999988  4565 457888888999999999999999998763   344 4567778899


Q ss_pred             HHhcCCHHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873          484 LSKAGLLDEAEKFMRSTP-VKWDVVAWH-TLLNASRVHQNYGFGRRIAEYILHMDPNDV  540 (709)
Q Consensus       484 ~~~~g~~~~A~~~~~~~~-~~pd~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  540 (709)
                      |.+.|++++|.+.++++. ..|+...+. .+..++...|+.++|...++++++..|++.
T Consensus       328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            999999999999988652 456654443 345678899999999999999999998753

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.78  E-value=4.9e-15  Score=165.77  Aligned_cols=437  Identities=9%  Similarity=-0.045  Sum_probs=295.6

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039873          102 YSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYT  181 (709)
Q Consensus       102 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~  181 (709)
                      +...-..+.+.|++++|+..|++.. .  ..|+...|..+..++...|+++.|...+..+++.. +.+...+..+...|.
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al-~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAI-E--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH-h--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            4455667888899999999999877 2  56777888888888889999999999999888864 234567788888999


Q ss_pred             hcCChHHHHHHHhhCCCCC---cccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHH
Q 039873          182 KCLDVEMAKRLLDLLPGYD---VFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQV  258 (709)
Q Consensus       182 ~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  258 (709)
                      ..|++++|..-|......+   ......++.-+..    ..+........+.. .++...+..+.. +...........-
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~  279 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG  279 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence            9999999988776543211   1111111111111    12222222222221 111111111111 1111111111111


Q ss_pred             HHHHHHcCCCCchHHHHHHHHHH------HhcCChHHHHHHHHhccCC------CHhhHHHHHHHHHHcCCHhHHHHHHH
Q 039873          259 HSQMLKSDIEPDVFINSAMISMY------GKCGKFSNAKKVFEGLETR------NVVLWTAMVAACFQNEYFEEALNLFC  326 (709)
Q Consensus       259 ~~~~~~~g~~~~~~~~~~li~~y------~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~  326 (709)
                      +....+  ..++  ....++..+      ...+++++|.+.|+...+.      +...|+.+...+...|++++|+..|+
T Consensus       280 ~~~~~~--~~~~--~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~  355 (615)
T TIGR00990       280 LEDSNE--LDEE--TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS  355 (615)
T ss_pred             hhcccc--cccc--cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            111111  1111  111111111      2346788999999887642      34678888888999999999999999


Q ss_pred             HHHhCCCCCC-ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CC
Q 039873          327 GMEYEAIRPN-EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RD  402 (709)
Q Consensus       327 ~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~  402 (709)
                      +..+.  .|+ ...|..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++..+   .+
T Consensus       356 kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~  432 (615)
T TIGR00990       356 KSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF  432 (615)
T ss_pred             HHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence            98864  454 3467777778889999999999999998875 55678889999999999999999999998763   35


Q ss_pred             hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh-------
Q 039873          403 IITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL-------  474 (709)
Q Consensus       403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------  474 (709)
                      ...|..+...+.+.|++++|+..|++....  .|+ ...+..+...+...|++++|...|+.....   .|+.       
T Consensus       433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~  507 (615)
T TIGR00990       433 IFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNV  507 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccH
Confidence            667888899999999999999999999874  454 668888888999999999999999998652   3321       


Q ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhh
Q 039873          475 -EHYTCIVGLLSKAGLLDEAEKFMRS-TPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYA  551 (709)
Q Consensus       475 -~~~~~li~~~~~~g~~~~A~~~~~~-~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  551 (709)
                       ..++.....+...|++++|.+++++ +.+.|+ ...+..+...+...|++++|...++++.++.+.....+        
T Consensus       508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------  579 (615)
T TIGR00990       508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------  579 (615)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------
Confidence             1122233344557999999999876 345565 56788899999999999999999999999876543322        


Q ss_pred             hcCCchhHHHHHHHHHh
Q 039873          552 KEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       552 ~~g~~~~a~~~~~~m~~  568 (709)
                      ....|.++.++..+..+
T Consensus       580 ~a~~~~~a~~~~~~~~~  596 (615)
T TIGR00990       580 QAISYAEATRTQIQVQE  596 (615)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            22345566666555443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.77  E-value=5.5e-15  Score=168.36  Aligned_cols=392  Identities=8%  Similarity=-0.017  Sum_probs=296.4

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC-hhhHHHHHH
Q 039873          169 CKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWD-SVTYVNAFG  244 (709)
Q Consensus       169 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~  244 (709)
                      +.....-.+......|+.++|++++.+...   .+...+..+...+.+.|++++|+++|++..+.  .|+ ......+..
T Consensus        14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~   91 (765)
T PRK10049         14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL   91 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            344445556677889999999999998764   24445899999999999999999999998875  444 455667777


Q ss_pred             HHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHH
Q 039873          245 LSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEA  321 (709)
Q Consensus       245 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A  321 (709)
                      .+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+   .+...+..+...+...|..++|
T Consensus        92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A  169 (765)
T PRK10049         92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA  169 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence            8889999999999999999874 55566 88899999999999999999999875   3566777788888899999999


Q ss_pred             HHHHHHHHhCCCCCCcc------chHHHHHHHh-----ccCCh---hHHHHHHHHHHHh-CCCCChh-HH-hH---HHhH
Q 039873          322 LNLFCGMEYEAIRPNEF------TFAVMLNSAA-----GLSAL---RHGDLLHAHIEKS-GFKEHLI-VG-NA---LINM  381 (709)
Q Consensus       322 ~~~~~~m~~~g~~pd~~------t~~~ll~~~~-----~~~~~---~~a~~i~~~~~~~-g~~~~~~-~~-~~---li~~  381 (709)
                      ++.+++...   .|+..      .....+....     ..+.+   +.|.+.++.+.+. .-.|+.. .+ ..   .+.+
T Consensus       170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~  246 (765)
T PRK10049        170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA  246 (765)
T ss_pred             HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence            999876653   33310      1111222211     11223   6677777777754 2223221 11 11   1234


Q ss_pred             HHhcCCHHHHHHHHhhcCCCC---hh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccc
Q 039873          382 YAKGGNIEAANKVFSDMRYRD---II-TWNAMICGYSHHGLGREALTLFQNMLAAEERPN-----HVTFVGVLSACGHLG  452 (709)
Q Consensus       382 y~~~g~~~~A~~~f~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~t~~~ll~a~~~~g  452 (709)
                      +...|++++|...|+++.+.+   +. .-..+...|...|++++|+..|+++...  .|.     ......+..++...|
T Consensus       247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g  324 (765)
T PRK10049        247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESE  324 (765)
T ss_pred             HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcc
Confidence            457799999999999988532   11 1122567899999999999999998764  332     234566677889999


Q ss_pred             cHHHHHHHHHHHHHhhC----------CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 039873          453 LVQEGFYYLNHLMKQIG----------IVPG---LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASR  517 (709)
Q Consensus       453 ~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~  517 (709)
                      ++++|.++++.+.....          -.|+   ...+..+..++...|++++|++.++++ ...|+ ...+..+...+.
T Consensus       325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~  404 (765)
T PRK10049        325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ  404 (765)
T ss_pred             cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999876321          1123   234567888999999999999999864 23344 788899999999


Q ss_pred             hcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          518 VHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       518 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      ..|+++.|++.++++++++|++...+..++..+...|+|++|..+++.+.+.
T Consensus       405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999764

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.76  E-value=3.2e-14  Score=151.66  Aligned_cols=548  Identities=13%  Similarity=0.028  Sum_probs=381.6

Q ss_pred             CCChhHHhhhchHHhhhCCCCCCcchHHHHHHHhc--CCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCCh
Q 039873            7 PTSPQAATRCAPFLFKQNRAPPSVEDTLKLLKHSA--DSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQI   84 (709)
Q Consensus         7 ~~~p~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~   84 (709)
                      +.+.+.|...|....+++  +++.  ...|.++|.  ..+++..+..++..++...+..+ +|+.+.  +-..+.++|+.
T Consensus       143 ~~~~~~A~a~F~~Vl~~s--p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-aD~rIg--ig~Cf~kl~~~  215 (1018)
T KOG2002|consen  143 DKSMDDADAQFHFVLKQS--PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACK-ADVRIG--IGHCFWKLGMS  215 (1018)
T ss_pred             CccHHHHHHHHHHHHhhC--Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC-CCccch--hhhHHHhccch
Confidence            344566777777777654  2333  333445544  67899999999999877654411 455443  33567799999


Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHH------hCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHH
Q 039873           85 SIARQLFDNMRQRNVVSYSSLMTWYL------HNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCH  158 (709)
Q Consensus        85 ~~A~~~f~~~~~~~~~~~~~li~~~~------~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  158 (709)
                      +.|+..|.+..+-|...-++++....      ....+..++.++...-...+  -|+...+.|-.-+.-.+++..+..+.
T Consensus       216 ~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la  293 (1018)
T KOG2002|consen  216 EKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLA  293 (1018)
T ss_pred             hhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHH
Confidence            99999999998766655555543321      22345567777666542222  35667788888888999999999999


Q ss_pred             HHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhhCCCC--C--cccHHHHHHHHHhCCCccHHHHHHHHHHhCCC
Q 039873          159 GYVFKSGLVFC--KYVRNALVELYTKCLDVEMAKRLLDLLPGY--D--VFEYNSVLNGLIENECFRGGVEVLGKMVSGSV  232 (709)
Q Consensus       159 ~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  232 (709)
                      ..+++.-....  ...|--+..+|-..|+++.|...|-.....  |  +..+--+...|.+.|+.+.+...|+...+.  
T Consensus       294 ~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--  371 (1018)
T KOG2002|consen  294 EHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--  371 (1018)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--
Confidence            88887653211  234666778999999999999999765542  2  445667889999999999999999999875  


Q ss_pred             CCC-hhhHHHHHHHHhcCC----CcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCh------HHHHHHHHh-ccCC
Q 039873          233 RWD-SVTYVNAFGLSASLK----DLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKF------SNAKKVFEG-LETR  300 (709)
Q Consensus       233 ~p~-~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~------~~A~~~~~~-m~~~  300 (709)
                      .|| ..|...+...|+..+    ..+.|..+.....+.- +.|...|-.+..+|-...-+      ..|..++.. +...
T Consensus       372 ~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~i  450 (1018)
T KOG2002|consen  372 LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQI  450 (1018)
T ss_pred             CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCC
Confidence            444 446666666666664    4556666666666553 56777888887777655433      333333322 2234


Q ss_pred             CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhC---CCCCCcc-----ch-HHHHHHHhccCChhHHHHHHHHHHHhCCCCC
Q 039873          301 NVVLWTAMVAACFQNEYFEEALNLFCGMEYE---AIRPNEF-----TF-AVMLNSAAGLSALRHGDLLHAHIEKSGFKEH  371 (709)
Q Consensus       301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~~-----t~-~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~  371 (709)
                      .+...|.+..-+...|++++|...|.+....   ...+|..     |. -.+....-..++.+.|.+++..+++.. +.-
T Consensus       451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~Y  529 (1018)
T KOG2002|consen  451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGY  529 (1018)
T ss_pred             CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chh
Confidence            6678899999999999999999999988654   2334442     11 223334456678999999999998864 222


Q ss_pred             hhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 039873          372 LIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAE-ERPNHVTFVGVLSA  447 (709)
Q Consensus       372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a  447 (709)
                      +..|-.|..+--..+...+|...+..+.   ..|+..|.-+...|.....+..|.+-|+.....- ..+|..+..+|.+.
T Consensus       530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~  609 (1018)
T KOG2002|consen  530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV  609 (1018)
T ss_pred             HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence            2223333323333456778888888766   4577788888888888888888888777665432 34677777777775


Q ss_pred             Hhc------------cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 039873          448 CGH------------LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP--VKWDVVAWHTLL  513 (709)
Q Consensus       448 ~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~pd~~~~~~ll  513 (709)
                      |..            .+..++|++.|.++.+  ..+.+...-|-+.-.++..|++.+|..+|.+..  ...+..+|-.+.
T Consensus       610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla  687 (1018)
T KOG2002|consen  610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA  687 (1018)
T ss_pred             HHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence            532            3456788888887765  344566777888888999999999999998652  122456788899


Q ss_pred             HHHHhcCCchHHHHHHHHHHhcC--CCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          514 NASRVHQNYGFGRRIAEYILHMD--PNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       514 ~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      ..|...|++..|+++|+..++..  -+++.....|+.++.+.|+|.+|.+........
T Consensus       688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~  745 (1018)
T KOG2002|consen  688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL  745 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            99999999999999999987643  456778889999999999999999988777654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.75  E-value=1.5e-14  Score=161.34  Aligned_cols=345  Identities=10%  Similarity=-0.039  Sum_probs=220.7

Q ss_pred             HccCChHHHHHHHhcCCCC------CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCch
Q 039873           79 AKCNQISIARQLFDNMRQR------NVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGA  152 (709)
Q Consensus        79 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~  152 (709)
                      .|..+++.---.|..-++.      +..-.-.++..+.+.|++++|+.+++... ..... +...+..++.++...|+++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l-~~~p~-~~~~l~~l~~~~l~~g~~~   93 (656)
T PRK15174         16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRV-LTAKN-GRDLLRRWVISPLASSQPD   93 (656)
T ss_pred             hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHH-HhCCC-chhHHHHHhhhHhhcCCHH
Confidence            3556666666666655531      12223345667788888889988888876 33222 3444555556666788888


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHh
Q 039873          153 EGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVS  229 (709)
Q Consensus       153 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  229 (709)
                      .|...++.+++.. +.+...+..+...|.+.|++++|...|++...   .+...|..+...+.+.|++++|...++++..
T Consensus        94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~  172 (656)
T PRK15174         94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ  172 (656)
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            8888888888774 23455677777788888888888888877654   3455677778888888888888888887765


Q ss_pred             CCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHH
Q 039873          230 GSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWT  306 (709)
Q Consensus       230 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~  306 (709)
                      ....+.. .+.. +..+...|++++|...++.+++....++......+...+.+.|+.++|...|++...   .+...+.
T Consensus       173 ~~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~  250 (656)
T PRK15174        173 EVPPRGD-MIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR  250 (656)
T ss_pred             hCCCCHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            4322222 2222 234566778888887777776654333344445556677777777777777777653   2456667


Q ss_pred             HHHHHHHHcCCHhH----HHHHHHHHHhCCCCCC-ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhH
Q 039873          307 AMVAACFQNEYFEE----ALNLFCGMEYEAIRPN-EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINM  381 (709)
Q Consensus       307 ~li~~~~~~g~~~~----A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~  381 (709)
                      .+...|.+.|++++    |+..|++..+.  .|+ ...+..+...+...|++++|...++.+.+.. +.+..+...+...
T Consensus       251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~  327 (656)
T PRK15174        251 SLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARA  327 (656)
T ss_pred             HHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            77777777777765    67777776653  343 3455556666666777777777777666653 3344555566666


Q ss_pred             HHhcCCHHHHHHHHhhcC--CCChhh-HHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873          382 YAKGGNIEAANKVFSDMR--YRDIIT-WNAMICGYSHHGLGREALTLFQNMLA  431 (709)
Q Consensus       382 y~~~g~~~~A~~~f~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~  431 (709)
                      |.+.|++++|...|+++.  .|+... +..+..++...|+.++|++.|++..+
T Consensus       328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~  380 (656)
T PRK15174        328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ  380 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            777777777777776655  233222 23344556666777777777776665

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.74  E-value=1.6e-13  Score=153.31  Aligned_cols=435  Identities=9%  Similarity=0.023  Sum_probs=267.5

Q ss_pred             HHHccCChHHHHHHHhcCCC--CCcc-hHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhH---HHHHHHHhcCCC
Q 039873           77 LYAKCNQISIARQLFDNMRQ--RNVV-SYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIF---SIVLSSCSRSGR  150 (709)
Q Consensus        77 ~~~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~---~~ll~~~~~~~~  150 (709)
                      ...+.|+++.|+..|++..+  |+.. ....++..+...|+.++|+..+++..     .|+...+   ..+...+...|+
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-----~p~n~~~~~llalA~ly~~~gd  117 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-----SSMNISSRGLASAARAYRNEKR  117 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHHHcCC
Confidence            45677888888888877764  3321 23367777777788888888877764     3322222   222345666677


Q ss_pred             chHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHh--CCCccHHHHHHHHHH
Q 039873          151 GAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIE--NECFRGGVEVLGKMV  228 (709)
Q Consensus       151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~  228 (709)
                      ++.|.++++.+++.... +..++..++..|...++.++|++.++++...+......+..+|..  .++..+|++.++++.
T Consensus       118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll  196 (822)
T PRK14574        118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV  196 (822)
T ss_pred             HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            88888888877776533 345555667777777777777777777766444333333334443  344444777777776


Q ss_pred             hCCCCCC-hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHH
Q 039873          229 SGSVRWD-SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTA  307 (709)
Q Consensus       229 ~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~  307 (709)
                      +.  .|+ ...+.....+..+.|-...|.++...      .|+.++-......     +.+.|.+..+.-..++      
T Consensus       197 ~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~------  257 (822)
T PRK14574        197 RL--APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPT------  257 (822)
T ss_pred             Hh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhccccc------
Confidence            64  233 33445555566666665555544433      1222111111100     0011111111100000      


Q ss_pred             HHHHHHHcCC---HhHHHHHHHHHHh-CCCCCCccc-h----HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHH
Q 039873          308 MVAACFQNEY---FEEALNLFCGMEY-EAIRPNEFT-F----AVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNAL  378 (709)
Q Consensus       308 li~~~~~~g~---~~~A~~~~~~m~~-~g~~pd~~t-~----~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l  378 (709)
                          -...++   .+.|+.-++.+.. .+-.|.... |    .-.+-++...++..++...++.+...+.+....+-.++
T Consensus       258 ----~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~  333 (822)
T PRK14574        258 ----RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA  333 (822)
T ss_pred             ----ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence                000111   2344555555443 222232222 1    12344666777788888888888877766666777788


Q ss_pred             HhHHHhcCCHHHHHHHHhhcCCC---------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-------------CCC
Q 039873          379 INMYAKGGNIEAANKVFSDMRYR---------DIITWNAMICGYSHHGLGREALTLFQNMLAAE-------------ERP  436 (709)
Q Consensus       379 i~~y~~~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p  436 (709)
                      .++|...+++++|..+|..+...         +......|.-+|...+++++|..+++++...-             ..|
T Consensus       334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~  413 (822)
T PRK14574        334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND  413 (822)
T ss_pred             HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence            88888888888888888876431         22334667888888888888888888887731             112


Q ss_pred             CHHH-HHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 039873          437 NHVT-FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLL  513 (709)
Q Consensus       437 d~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll  513 (709)
                      |-.. +..+...+...|++.+|.+.++.+...  -+-|......+.+++...|++.+|++.++.. .+.|+ ..+.....
T Consensus       414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~  491 (822)
T PRK14574        414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA  491 (822)
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence            3332 334456678889999999999998653  3456778889999999999999999998754 34566 55566677


Q ss_pred             HHHHhcCCchHHHHHHHHHHhcCCCCchh
Q 039873          514 NASRVHQNYGFGRRIAEYILHMDPNDVGT  542 (709)
Q Consensus       514 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  542 (709)
                      .+....+++++|..+.+.+.+..|++..+
T Consensus       492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~~~  520 (822)
T PRK14574        492 ETAMALQEWHQMELLTDDVISRSPEDIPS  520 (822)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence            77788899999999999999999988643

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.71  E-value=3.5e-13  Score=150.60  Aligned_cols=431  Identities=9%  Similarity=-0.010  Sum_probs=273.7

Q ss_pred             HHhCCChhHHHHHHHHhhhCCCCCCCh--hhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 039873          109 YLHNGFLLETLKLFKNMVSGDNLEPNE--YIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDV  186 (709)
Q Consensus       109 ~~~~g~~~~A~~~~~~m~~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~  186 (709)
                      ..+.|+++.|++.|++..+   ..|+.  ..+ .++..+...|+.++|..+++..+.. -........++...|...|++
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~---~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy  118 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESK---AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW  118 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHh---hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence            4567777777777777652   33443  123 5566666667777777776666611 111222233334566666777


Q ss_pred             HHHHHHHhhCCCC---CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039873          187 EMAKRLLDLLPGY---DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQML  263 (709)
Q Consensus       187 ~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~  263 (709)
                      ++|..+|+++.+.   |...+..++..|.+.++.++|++.++++...  .|+...+..++..+...++..+|.+.++.++
T Consensus       119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll  196 (822)
T PRK14574        119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV  196 (822)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            7777777766542   3344555666666777777777777776553  3444444333333333444444666666666


Q ss_pred             HcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCC-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHH
Q 039873          264 KSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETR-NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAV  342 (709)
Q Consensus       264 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~  342 (709)
                      +.. +.+...+..++....+.|-...|.++..+-+.- +...+.-+        +.+.|.+..    +.+..++..    
T Consensus       197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~v----r~a~~~~~~----  259 (822)
T PRK14574        197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQV----RMAVLPTRS----  259 (822)
T ss_pred             HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHH----hhccccccc----
Confidence            664 445566666666666667666666666554421 11111100        011111111    111111110    


Q ss_pred             HHHHHhccCC---hhHHHHHHHHHHHh-CC-CCChhHH-h---HHHhHHHhcCCHHHHHHHHhhcCCCC----hhhHHHH
Q 039873          343 MLNSAAGLSA---LRHGDLLHAHIEKS-GF-KEHLIVG-N---ALINMYAKGGNIEAANKVFSDMRYRD----IITWNAM  409 (709)
Q Consensus       343 ll~~~~~~~~---~~~a~~i~~~~~~~-g~-~~~~~~~-~---~li~~y~~~g~~~~A~~~f~~~~~~~----~~~~~~l  409 (709)
                            ...+   .+.+..-++.+... +- ++....+ .   -.+-++.+.|++.++.+.|+.+....    ..+--++
T Consensus       260 ------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~  333 (822)
T PRK14574        260 ------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA  333 (822)
T ss_pred             ------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence                  0112   23344444444431 21 2222222 2   23446778999999999999998432    2355678


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCC----------CCC-
Q 039873          410 ICGYSHHGLGREALTLFQNMLAAE-----ERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGI----------VPG-  473 (709)
Q Consensus       410 i~~~~~~g~~~~A~~~~~~m~~~g-----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----------~p~-  473 (709)
                      .++|...+++++|+.+|+++....     ..++......|.-|+...+++++|..+++.+.+....          .|+ 
T Consensus       334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~  413 (822)
T PRK14574        334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND  413 (822)
T ss_pred             HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence            899999999999999999997643     1223334578889999999999999999998763220          122 


Q ss_pred             --hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039873          474 --LEHYTCIVGLLSKAGLLDEAEKFMRSTP-VKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNM  549 (709)
Q Consensus       474 --~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  549 (709)
                        ...+..++..+.-.|++.+|++.++++- ..| |...+..+...+...|++..|++.++.+..++|++..+...++..
T Consensus       414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~  493 (822)
T PRK14574        414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET  493 (822)
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence              2345567888999999999999998762 234 588889999999999999999999999999999999999999999


Q ss_pred             hhhcCCchhHHHHHHHHHhC
Q 039873          550 YAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       550 ~~~~g~~~~a~~~~~~m~~~  569 (709)
                      +...|+|.+|.++.+...+.
T Consensus       494 al~l~e~~~A~~~~~~l~~~  513 (822)
T PRK14574        494 AMALQEWHQMELLTDDVISR  513 (822)
T ss_pred             HHhhhhHHHHHHHHHHHHhh
Confidence            99999999999988777543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.71  E-value=6.8e-13  Score=141.74  Aligned_cols=548  Identities=13%  Similarity=0.031  Sum_probs=363.7

Q ss_pred             hhHHhhhchHHhhhC-CCCCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccC---ChH
Q 039873           10 PQAATRCAPFLFKQN-RAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCN---QIS   85 (709)
Q Consensus        10 p~~a~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g---~~~   85 (709)
                      .-.|+.+|....... ...||+..-  .-..+.+.++.+.|+.-|..+++..+.    ++.++-.|--+-....   .+.
T Consensus       180 Y~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLdp~----~v~alv~L~~~~l~~~d~~s~~  253 (1018)
T KOG2002|consen  180 YRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFERALQLDPT----CVSALVALGEVDLNFNDSDSYK  253 (1018)
T ss_pred             HHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHHHHHhcChh----hHHHHHHHHHHHHHccchHHHH
Confidence            345566665544433 345555331  113335678888888888888875432    2222222222222222   334


Q ss_pred             HHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCC-CChhhHHHHHHHHhcCCCchHHHHHHHHH
Q 039873           86 IARQLFDNMR---QRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLE-PNEYIFSIVLSSCSRSGRGAEGRQCHGYV  161 (709)
Q Consensus        86 ~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  161 (709)
                      .+..++...-   ..|++..|.|-+-|.-.|++..++.+...+....-.. .-...|-.+.+++-..|+++.|...+...
T Consensus       254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s  333 (1018)
T KOG2002|consen  254 KGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES  333 (1018)
T ss_pred             HHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            4444444332   2577888889999999999999999988886211111 12345778888899999999999999888


Q ss_pred             HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCC----CccHHHHHHHHHHhCCCCC
Q 039873          162 FKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGY---DVFEYNSVLNGLIENE----CFRGGVEVLGKMVSGSVRW  234 (709)
Q Consensus       162 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p  234 (709)
                      .+.....-+..+-.|..+|.+.|+++.|...|+.+...   +..+.-.+...|+..+    ..+.|..++.+..+.- .-
T Consensus       334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~  412 (1018)
T KOG2002|consen  334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PV  412 (1018)
T ss_pred             HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cc
Confidence            77643322344556789999999999999999987653   3344445555566554    3456666666665542 23


Q ss_pred             ChhhHHHHHHHHhcCCCcHHHHHHHHH----HHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCC-------CH-
Q 039873          235 DSVTYVNAFGLSASLKDLKLGLQVHSQ----MLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETR-------NV-  302 (709)
Q Consensus       235 ~~~t~~~ll~~~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-------~~-  302 (709)
                      |...|..+-..+-. ++......++..    +...+-.+...+.|.+...+...|+++.|...|++....       |. 
T Consensus       413 d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~  491 (1018)
T KOG2002|consen  413 DSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG  491 (1018)
T ss_pred             cHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence            45566666555544 333333544443    345566678889999999999999999999999876432       22 


Q ss_pred             -----hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccch-HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHh
Q 039873          303 -----VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTF-AVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGN  376 (709)
Q Consensus       303 -----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~  376 (709)
                           .+--.+...+-..++++.|.+.|..+.+.  .|.-++- .-++......+...+|...+..+...+ ..++.+.+
T Consensus       492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ars  568 (1018)
T KOG2002|consen  492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARS  568 (1018)
T ss_pred             ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHH
Confidence                 12223455566678899999999998875  3554332 222222233466777888887777654 55667777


Q ss_pred             HHHhHHHhcCCHHHHHHHHhhcC-----CCChhhHHHHHHHHH------------HcCChHHHHHHHHHHHHCCCCCCHH
Q 039873          377 ALINMYAKGGNIEAANKVFSDMR-----YRDIITWNAMICGYS------------HHGLGREALTLFQNMLAAEERPNHV  439 (709)
Q Consensus       377 ~li~~y~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~------------~~g~~~~A~~~~~~m~~~g~~pd~~  439 (709)
                      .+.+.|.+...+..|.+-|..+.     .+|..+.-+|.+.|.            ..+..++|+++|.+.++.. +-|..
T Consensus       569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~y  647 (1018)
T KOG2002|consen  569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMY  647 (1018)
T ss_pred             HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhh
Confidence            77778888888888888665544     235555555555443            2345788999999888742 34667


Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 039873          440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST----PVKWDVVAWHTLLNA  515 (709)
Q Consensus       440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~pd~~~~~~ll~~  515 (709)
                      .-+.+.-.++..|.+.+|..+|.+..+...  -...+|-.+...|..+|++-.|+++|+..    .-+.+..+.+.|..+
T Consensus       648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara  725 (1018)
T KOG2002|consen  648 AANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA  725 (1018)
T ss_pred             hccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence            777888888899999999999999876432  33447888889999999999999987632    224468888888899


Q ss_pred             HHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHH-------------------hhhcCCchhHHHHHHHHHhCCC
Q 039873          516 SRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNM-------------------YAKEKRWDGVSKIRKLMKVRKV  571 (709)
Q Consensus       516 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-------------------~~~~g~~~~a~~~~~~m~~~~~  571 (709)
                      +...|.+.+|.+....+....|.|+..-..++-.                   ....+..++|.++|..|...+-
T Consensus       726 ~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d  800 (1018)
T KOG2002|consen  726 WYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD  800 (1018)
T ss_pred             HHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999998887655544432                   3334567788899999987544

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=1.4e-12  Score=126.77  Aligned_cols=417  Identities=12%  Similarity=0.114  Sum_probs=272.9

Q ss_pred             cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHh--cCCCchHHH-HHHHHHHHhCCCCchhHHHH
Q 039873           99 VVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCS--RSGRGAEGR-QCHGYVFKSGLVFCKYVRNA  175 (709)
Q Consensus        99 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~  175 (709)
                      +++=|.|+. ...+|...++.-+|+.|+ ..|+..+...-..++...+  ...++--++ +.|-.|.+.|-+ +..+|  
T Consensus       116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--  190 (625)
T KOG4422|consen  116 VETENNLLK-MISSREVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--  190 (625)
T ss_pred             hcchhHHHH-HHhhcccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence            345566554 455678888999999999 7888777766555554432  333333221 223334343322 22222  


Q ss_pred             HHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHH
Q 039873          176 LVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLG  255 (709)
Q Consensus       176 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  255 (709)
                            |.|.+.+  -+|+. ..+...++..||.|+++--..+.|.+++++-.....+.+..+|+.++.+.+-    ..+
T Consensus       191 ------K~G~vAd--L~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~  257 (625)
T KOG4422|consen  191 ------KSGAVAD--LLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG  257 (625)
T ss_pred             ------ccccHHH--HHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence                  3455433  44444 4456789999999999999999999999999999899999999999987643    345


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHH----Hhcc----CCCHhhHHHHHHHHHHcCCHhH-HHHHHH
Q 039873          256 LQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVF----EGLE----TRNVVLWTAMVAACFQNEYFEE-ALNLFC  326 (709)
Q Consensus       256 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~  326 (709)
                      +++..+|+...+.||..|+|+++.+.++.|+++.|++-+    .+|.    +|...+|.-+|.-+.+.++..+ |..++.
T Consensus       258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~  337 (625)
T KOG4422|consen  258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN  337 (625)
T ss_pred             HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence            889999999999999999999999999999998876655    4444    4788999999999999888755 455555


Q ss_pred             HHHh----CCCCC----CccchHHHHHHHhccCChhHHHHHHHHHHHhC----CCCC---hhHHhHHHhHHHhcCCHHHH
Q 039873          327 GMEY----EAIRP----NEFTFAVMLNSAAGLSALRHGDLLHAHIEKSG----FKEH---LIVGNALINMYAKGGNIEAA  391 (709)
Q Consensus       327 ~m~~----~g~~p----d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g----~~~~---~~~~~~li~~y~~~g~~~~A  391 (709)
                      ++..    ..++|    |..-|.+.+..|.+..+.+.|.++++......    +.++   .+-|..+....++...++.-
T Consensus       338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~  417 (625)
T KOG4422|consen  338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT  417 (625)
T ss_pred             HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5543    22333    44567888999999999999999998876421    2232   23345677788888888888


Q ss_pred             HHHHhhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc---------------
Q 039873          392 NKVFSDMRY----RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLG---------------  452 (709)
Q Consensus       392 ~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g---------------  452 (709)
                      ...|+.|..    |+..+-.-++.+....|+++-.-+++..|+..|..-+...-.-++.-.++..               
T Consensus       418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~  497 (625)
T KOG4422|consen  418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF  497 (625)
T ss_pred             HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence            899988863    5666666777788888888888888888877764444333333333333222               


Q ss_pred             -----cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcC
Q 039873          453 -----LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-------PVKWDVVAWHTLLNASRVHQ  520 (709)
Q Consensus       453 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~pd~~~~~~ll~~~~~~g  520 (709)
                           ++.++.+.-..-++  .........++..-++.|.|+.++|.+++.-.       +..|..-..--|+.+-.+.+
T Consensus       498 ak~aad~~e~~e~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~  575 (625)
T KOG4422|consen  498 AKCAADIKEAYESQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSN  575 (625)
T ss_pred             HHHHHHHHHHHHhhHHHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcC
Confidence                 11111111111011  22223345667777777788888777775422       22233322333444445555


Q ss_pred             CchHHHHHHHHHHhc
Q 039873          521 NYGFGRRIAEYILHM  535 (709)
Q Consensus       521 ~~~~a~~~~~~~~~~  535 (709)
                      +...|..+++-+...
T Consensus       576 spsqA~~~lQ~a~~~  590 (625)
T KOG4422|consen  576 SPSQAIEVLQLASAF  590 (625)
T ss_pred             CHHHHHHHHHHHHHc
Confidence            555555555555443

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=1e-11  Score=121.00  Aligned_cols=420  Identities=13%  Similarity=0.081  Sum_probs=236.4

Q ss_pred             chHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH---ccCChHHHHHHHhcCCC-----------
Q 039873           31 EDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYA---KCNQISIARQLFDNMRQ-----------   96 (709)
Q Consensus        31 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~---~~g~~~~A~~~f~~~~~-----------   96 (709)
                      .+=++|++.. ..+.+..+--+++.|.+.|.+   .+..+.-.|+..-+   ...-+-.-++-|-.|..           
T Consensus       117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~---vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~  192 (625)
T KOG4422|consen  117 ETENNLLKMI-SSREVKDSCILYERMRSENVD---VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKS  192 (625)
T ss_pred             cchhHHHHHH-hhcccchhHHHHHHHHhcCCC---CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccc
Confidence            3556666654 457788888899999988877   66666555554322   22211112233333331           


Q ss_pred             ------------CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 039873           97 ------------RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKS  164 (709)
Q Consensus        97 ------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  164 (709)
                                  ++..++..||+++++-...+.|.++|.+-. ....+.+..+||.+|.+.+    +..++.+..+|+..
T Consensus       193 G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~-~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisq  267 (625)
T KOG4422|consen  193 GAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHR-AAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQ  267 (625)
T ss_pred             ccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHH-HhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHh
Confidence                        233456666666666666666666666666 5555666666666665543    22335666666666


Q ss_pred             CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHH
Q 039873          165 GLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFG  244 (709)
Q Consensus       165 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~  244 (709)
                      ...||.+|+|+++...++.|.++.|++.                           |++++.+|++.|+.|...+|..++.
T Consensus       268 km~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik  320 (625)
T KOG4422|consen  268 KMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIK  320 (625)
T ss_pred             hcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHH
Confidence            6666666666666666666666655543                           4556666777777777777766666


Q ss_pred             HHhcCCCcHH-HHHHHHHHHH----cCCCC----chHHHHHHHHHHHhcCChHHHHHHHHhccCC-----------CHhh
Q 039873          245 LSASLKDLKL-GLQVHSQMLK----SDIEP----DVFINSAMISMYGKCGKFSNAKKVFEGLETR-----------NVVL  304 (709)
Q Consensus       245 ~~~~~~~~~~-a~~~~~~~~~----~g~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----------~~~~  304 (709)
                      .+.+.++..+ +..+..++..    ..+.|    |..-+..-++.+.+..+.+-|.++-.-+...           ...-
T Consensus       321 ~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fY  400 (625)
T KOG4422|consen  321 NFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFY  400 (625)
T ss_pred             HhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHH
Confidence            6666655533 3333333322    11222    3334445555555666666666655444321           1233


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh
Q 039873          305 WTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK  384 (709)
Q Consensus       305 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~  384 (709)
                      |..+....++....+.-+..|..|.-.-+-|+..+...++++....+.++...+++..++..|.........-+...+++
T Consensus       401 yr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~  480 (625)
T KOG4422|consen  401 YRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR  480 (625)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence            55566677777788888888888887777888888888888888888888888888888877644333332222222222


Q ss_pred             cCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc--CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 039873          385 GGNIEAANKVFSDMRYRDIITWNAMICGYSHH--GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLN  462 (709)
Q Consensus       385 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~  462 (709)
                      ..            ..|+...-..+-...++.  .-.+.....-.+|.+....|.  ..+.++.-+.+.|..++|.+++.
T Consensus       481 ~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~~qkA~e~l~  546 (625)
T KOG4422|consen  481 DK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGRTQKAWEMLG  546 (625)
T ss_pred             CC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcchHHHHHHHHH
Confidence            21            012211111111111110  001111122234444333333  34444445667777777777777


Q ss_pred             HHHHhhCCCCChHHHHH---HHHHHHhcCCHHHHHHHHHhC
Q 039873          463 HLMKQIGIVPGLEHYTC---IVGLLSKAGLLDEAEKFMRST  500 (709)
Q Consensus       463 ~~~~~~~~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~~  500 (709)
                      ...++..-.|.....++   +++.-.+......|...++-+
T Consensus       547 l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a  587 (625)
T KOG4422|consen  547 LFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA  587 (625)
T ss_pred             HHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            76554444444444453   344445666677777766544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.59  E-value=2.4e-10  Score=117.23  Aligned_cols=461  Identities=10%  Similarity=0.040  Sum_probs=331.8

Q ss_pred             HHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHH----HhCCCCchhHHHHHHHHHHh
Q 039873          107 TWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVF----KSGLVFCKYVRNALVELYTK  182 (709)
Q Consensus       107 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~y~~  182 (709)
                      .+|.+-.-++.|..+++..+  ..++.+...|.+..+.=-..|+.+....+.+.-+    ..|+..+..-|-.=...+-+
T Consensus       414 lAlarLetYenAkkvLNkaR--e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~  491 (913)
T KOG0495|consen  414 LALARLETYENAKKVLNKAR--EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED  491 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence            34555566777777777775  4566677777776666666777776666655433    35666666666555555666


Q ss_pred             cCChHHHHHHHhhCCC-----C-CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhcCCCcHHH
Q 039873          183 CLDVEMAKRLLDLLPG-----Y-DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRW-DSVTYVNAFGLSASLKDLKLG  255 (709)
Q Consensus       183 ~g~~~~A~~~f~~~~~-----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a  255 (709)
                      .|..-....+......     . --.+|+.-...|.+.+.++-|..+|...++.  -| +...|......=-..|..+.-
T Consensus       492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl  569 (913)
T KOG0495|consen  492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESL  569 (913)
T ss_pred             cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHH
Confidence            6666555555544322     1 2246777778888888888888888777663  33 333455555444566777777


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 039873          256 LQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEA  332 (709)
Q Consensus       256 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  332 (709)
                      ..++..++..- +.....|-....-+-..|++..|+.++.+.-+   .+...|-+-+..-..+.++++|..+|.+.... 
T Consensus       570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~-  647 (913)
T KOG0495|consen  570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-  647 (913)
T ss_pred             HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence            77887777663 44455666666677778888888888887654   24567888888888888889999888887763 


Q ss_pred             CCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHH
Q 039873          333 IRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-DIITWNAM  409 (709)
Q Consensus       333 ~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~l  409 (709)
                       .|+...|.--+..---++..++|.++++..++. ++.-...|-.+.+.|-+.++++.|.+.|..-.+  | .+..|-.|
T Consensus       648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL  725 (913)
T KOG0495|consen  648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL  725 (913)
T ss_pred             -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence             455555554444455567888888888888775 355567788888888888888888888876553  4 34578777


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC
Q 039873          410 ICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGL  489 (709)
Q Consensus       410 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  489 (709)
                      ...=-+.|..-+|..+|++.+..+ +-|...|...+..-.+.|+.++|.....++.++  .+.+-..|.--|.+..+.++
T Consensus       726 akleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~r  802 (913)
T KOG0495|consen  726 AKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQR  802 (913)
T ss_pred             HHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCccc
Confidence            777778888888999998888754 446678888888888889999998888887763  45556678888888888888


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          490 LDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       490 ~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      -..+...+++..  .|+.+.-++...+-....++.|.+.|+++.+.+|++..++.-+...+...|.-++-.++++.....
T Consensus       803 kTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~  880 (913)
T KOG0495|consen  803 KTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA  880 (913)
T ss_pred             chHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            777777777764  456666666677778889999999999999999999999999999999999999999999887653


Q ss_pred             CCccCCceeEEEE
Q 039873          570 KVKKEPGSSWTEI  582 (709)
Q Consensus       570 ~~~~~~~~s~~~~  582 (709)
                        .|.-|..|..+
T Consensus       881 --EP~hG~~W~av  891 (913)
T KOG0495|consen  881 --EPTHGELWQAV  891 (913)
T ss_pred             --CCCCCcHHHHH
Confidence              34455667644

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.57  E-value=2.9e-12  Score=125.23  Aligned_cols=503  Identities=11%  Similarity=0.049  Sum_probs=313.3

Q ss_pred             CCcchHHHHHHHhcCCCCchhHHHHHHHHHHh----cCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC----CCc
Q 039873           28 PSVEDTLKLLKHSADSKDLKLGKVIHAHLIIT----TESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQ----RNV   99 (709)
Q Consensus        28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~----~~~   99 (709)
                      ....-|-..|.-....|+-+.+.--|+.-...    .++   .+..+...|..-|.......+|+..++-+.+    ||.
T Consensus       160 n~~~~~k~aldkakdagrker~lvk~req~~~~e~inld---ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~na  236 (840)
T KOG2003|consen  160 NECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLD---LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNA  236 (840)
T ss_pred             hhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhcccc---chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCC
Confidence            34445666666666667666666555543322    223   3444555566677777777888888776654    222


Q ss_pred             chH-HHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhh----HHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHH
Q 039873          100 VSY-SSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYI----FSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRN  174 (709)
Q Consensus       100 ~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~  174 (709)
                      -.. -.+-..+.+...+..|+++|+-.. ..-...+..+    .+.+--.+.+.|+++.|..-|+...+.  .|+..+.-
T Consensus       237 g~lkmnigni~~kkr~fskaikfyrmal-dqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~  313 (840)
T KOG2003|consen  237 GILKMNIGNIHFKKREFSKAIKFYRMAL-DQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAAL  313 (840)
T ss_pred             ceeeeeecceeeehhhHHHHHHHHHHHH-hhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhh
Confidence            111 112334567777888888887655 2211122222    333333456778888888888887776  46666666


Q ss_pred             HHHHHHHhcCChHHHHHHHhhCCC----------------CCcccHHHHH-----HHHHhCC--CccHHHHHHHHHHhCC
Q 039873          175 ALVELYTKCLDVEMAKRLLDLLPG----------------YDVFEYNSVL-----NGLIENE--CFRGGVEVLGKMVSGS  231 (709)
Q Consensus       175 ~li~~y~~~g~~~~A~~~f~~~~~----------------~~~~~~~~li-----~~~~~~g--~~~~A~~l~~~m~~~g  231 (709)
                      .|+-.|.--|+-+...+.|.+|..                |+....|.-|     .-.-+..  +.++++-.-.++..--
T Consensus       314 nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapv  393 (840)
T KOG2003|consen  314 NLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPV  393 (840)
T ss_pred             hhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccc
Confidence            666666677888888888877642                2222222222     1111111  1122222222222222


Q ss_pred             CCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHH----
Q 039873          232 VRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTA----  307 (709)
Q Consensus       232 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~----  307 (709)
                      +.||-.   .--..|         .+.+..-.-..+..+..  -.-..-|.+.|+++.|.++++-...+|..+-++    
T Consensus       394 i~~~fa---~g~dwc---------le~lk~s~~~~la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~n  459 (840)
T KOG2003|consen  394 IAPDFA---AGCDWC---------LESLKASQHAELAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANN  459 (840)
T ss_pred             cccchh---cccHHH---------HHHHHHhhhhhhhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhh
Confidence            233211   000111         11111110000111111  112335779999999999988887765433222    


Q ss_pred             HH-HHHHHc-CCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhc
Q 039873          308 MV-AACFQN-EYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKG  385 (709)
Q Consensus       308 li-~~~~~~-g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~  385 (709)
                      |- --|.+- .++..|...-+...... +-|....+.--+.....|+++.|.+.+.+++...-......|| +.-.|-+.
T Consensus       460 l~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~  537 (840)
T KOG2003|consen  460 LCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEAL  537 (840)
T ss_pred             hHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHh
Confidence            22 223333 34566666555444221 1111111111122345689999999999998766444444444 34457789


Q ss_pred             CCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 039873          386 GNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLN  462 (709)
Q Consensus       386 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~  462 (709)
                      |++++|++.|-++.   ..++...-.+.+.|....++.+|++++.+.... ++.|...+..+...|-+.|+-.+|.+.+-
T Consensus       538 ~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~y  616 (840)
T KOG2003|consen  538 GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHY  616 (840)
T ss_pred             cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence            99999999998765   467777778889999999999999999877663 44467788888899999999999999876


Q ss_pred             HHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCCchHHHHHHHHHHhcCCCCc
Q 039873          463 HLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWDVVAWHTLLNAS-RVHQNYGFGRRIAEYILHMDPNDV  540 (709)
Q Consensus       463 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~  540 (709)
                      .--+  -++-+.++..-|..-|....-+++|..+|++. -++|+.+-|..++..| ++.|++..|.++++.....-|.|.
T Consensus       617 dsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl  694 (840)
T KOG2003|consen  617 DSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL  694 (840)
T ss_pred             hccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence            6422  34557888888889999999999999999865 4689999999999876 678999999999999999999999


Q ss_pred             hhHHHHHHHhhhcCC
Q 039873          541 GTYILLSNMYAKEKR  555 (709)
Q Consensus       541 ~~~~~l~~~~~~~g~  555 (709)
                      ...-.|+.++...|.
T Consensus       695 dclkflvri~~dlgl  709 (840)
T KOG2003|consen  695 DCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHhccccc
Confidence            999999999988885

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.54  E-value=2.2e-09  Score=110.29  Aligned_cols=490  Identities=11%  Similarity=0.054  Sum_probs=375.3

Q ss_pred             HHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC---CCcchHHHHHHHHHhC
Q 039873           36 LLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQ---RNVVSYSSLMTWYLHN  112 (709)
Q Consensus        36 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~  112 (709)
                      |-++.......+.|+.++..+++.=+    .+..    |.-+|++...++.|.+++++..+   .+...|-+-...--.+
T Consensus       382 LWKaAVelE~~~darilL~rAveccp----~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~n  453 (913)
T KOG0495|consen  382 LWKAAVELEEPEDARILLERAVECCP----QSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEAN  453 (913)
T ss_pred             HHHHHHhccChHHHHHHHHHHHHhcc----chHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhc
Confidence            33444455555666766666666422    2333    33466777788899999887764   4667787766666778


Q ss_pred             CChhHHHHHHHH----hhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCh
Q 039873          113 GFLLETLKLFKN----MVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFC--KYVRNALVELYTKCLDV  186 (709)
Q Consensus       113 g~~~~A~~~~~~----m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~  186 (709)
                      |+.+...++..+    +. ..|+..+...|..=..+|-..|..-.+..+...++..|++..  ..+|+.-...+.+.+.+
T Consensus       454 gn~~mv~kii~rgl~~L~-~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~  532 (913)
T KOG0495|consen  454 GNVDMVEKIIDRGLSELQ-ANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAI  532 (913)
T ss_pred             CCHHHHHHHHHHHHHHHh-hcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchH
Confidence            888877777644    44 689999999999999999999999999999999999887543  46888888999999999


Q ss_pred             HHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039873          187 EMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQML  263 (709)
Q Consensus       187 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~  263 (709)
                      +-|+.+|....+   .+...|...+..=-..|..++-..+|++.+..-. -....+.......-..|++..|+.++.++.
T Consensus       533 ~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af  611 (913)
T KOG0495|consen  533 ECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAF  611 (913)
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            999999987654   3666788777777778999999999999987622 233344445555667799999999999998


Q ss_pred             HcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC--CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCcc-ch
Q 039873          264 KSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET--RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEF-TF  340 (709)
Q Consensus       264 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~  340 (709)
                      +.. +.+..+|-+-+..-.....++.|+.+|.+...  ++...|.--+..---.+..++|++++++.++.  -|+.. .|
T Consensus       612 ~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~  688 (913)
T KOG0495|consen  612 EAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLW  688 (913)
T ss_pred             HhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHH
Confidence            876 45788999999999999999999999998764  45666766666666678899999999888764  56654 45


Q ss_pred             HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcC
Q 039873          341 AVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHG  417 (709)
Q Consensus       341 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g  417 (709)
                      ..+.+.+-+.++++.|+..|..=.+. ++..+..|-.|...--+.|.+-.|..+|++..-   .|...|-..|..-.+.|
T Consensus       689 lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~g  767 (913)
T KOG0495|consen  689 LMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAG  767 (913)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcC
Confidence            55556677778888888777654443 356677888999999999999999999998763   46789999999999999


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 039873          418 LGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFM  497 (709)
Q Consensus       418 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  497 (709)
                      ..+.|..+..+..+. ++.+...|.--|....+.+.-.....    +++  ..+-|..+.-++..++....+++.|++.|
T Consensus       768 n~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~D----ALk--kce~dphVllaia~lfw~e~k~~kar~Wf  840 (913)
T KOG0495|consen  768 NKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSID----ALK--KCEHDPHVLLAIAKLFWSEKKIEKAREWF  840 (913)
T ss_pred             CHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHH----HHH--hccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988875 45555667666666666555333322    233  34556677888889999999999999998


Q ss_pred             HhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873          498 RST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL  546 (709)
Q Consensus       498 ~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  546 (709)
                      .+. ...|| ..+|--+..-+.+||.-+.-.+++.+....+|.....+...
T Consensus       841 ~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av  891 (913)
T KOG0495|consen  841 ERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV  891 (913)
T ss_pred             HHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence            754 45566 78899899999999999999999999999999765555444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.54  E-value=8.1e-10  Score=117.98  Aligned_cols=346  Identities=12%  Similarity=0.095  Sum_probs=243.4

Q ss_pred             hcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChh
Q 039873           40 SADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMR---QRNVVSYSSLMTWYLHNGFLL  116 (709)
Q Consensus        40 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~  116 (709)
                      ....|+++.|..++..+++..+    .+...|-.|...|-..|+.+++...+-..-   ..|..-|-.+-....+.|+++
T Consensus       149 lfarg~~eeA~~i~~EvIkqdp----~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~  224 (895)
T KOG2076|consen  149 LFARGDLEEAEEILMEVIKQDP----RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN  224 (895)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCc----cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence            3345999999999999998765    478889999999999999999987664433   346677888888888899999


Q ss_pred             HHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHH----HHHHHhcCChHHHHHH
Q 039873          117 ETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNAL----VELYTKCLDVEMAKRL  192 (709)
Q Consensus       117 ~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----i~~y~~~g~~~~A~~~  192 (709)
                      +|.-.|.+..+ . -+++...+---...|-+.|+...|..-+.++.......|..-...+    +..|...++-+.|.+.
T Consensus       225 qA~~cy~rAI~-~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~  302 (895)
T KOG2076|consen  225 QARYCYSRAIQ-A-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA  302 (895)
T ss_pred             HHHHHHHHHHh-c-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999998872 2 1233333333455677889999999999988887654443333333    4556666777888888


Q ss_pred             HhhCCC--C---CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC----------------------hhhH----HH
Q 039873          193 LDLLPG--Y---DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWD----------------------SVTY----VN  241 (709)
Q Consensus       193 f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------------~~t~----~~  241 (709)
                      ++....  .   +...+|.++..|.+...++.|......+......+|                      ...|    .-
T Consensus       303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r  382 (895)
T KOG2076|consen  303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR  382 (895)
T ss_pred             HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence            877654  2   344688899999999999999998888876222222                      1111    12


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHcC--CCCchHHHHHHHHHHHhcCChHHHHHHHHhccC----CCHhhHHHHHHHHHHc
Q 039873          242 AFGLSASLKDLKLGLQVHSQMLKSD--IEPDVFINSAMISMYGKCGKFSNAKKVFEGLET----RNVVLWTAMVAACFQN  315 (709)
Q Consensus       242 ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~  315 (709)
                      +.-++......+....+...+.+..  ...+...+.-+.++|...|++.+|.++|..+..    .+...|--+..+|...
T Consensus       383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l  462 (895)
T KOG2076|consen  383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL  462 (895)
T ss_pred             HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence            2233445556666666666666666  344566788888888899999999998888865    3567888888888889


Q ss_pred             CCHhHHHHHHHHHHhCCCCCCcc-chHHHHHHHhccCChhHHHHHHHHHH--------HhCCCCChhHHhHHHhHHHhcC
Q 039873          316 EYFEEALNLFCGMEYEAIRPNEF-TFAVMLNSAAGLSALRHGDLLHAHIE--------KSGFKEHLIVGNALINMYAKGG  386 (709)
Q Consensus       316 g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~y~~~g  386 (709)
                      |.+++|++.|.+.+..  .|+.. .-.++-..+.+.|+.++|.+.+..+.        ..+..|+..+.-...+.|.+.|
T Consensus       463 ~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g  540 (895)
T KOG2076|consen  463 GEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG  540 (895)
T ss_pred             hhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence            9999999988888764  34432 23344455677888888888887743        2344556666666777777888


Q ss_pred             CHHHHHH
Q 039873          387 NIEAANK  393 (709)
Q Consensus       387 ~~~~A~~  393 (709)
                      +.++=..
T Consensus       541 k~E~fi~  547 (895)
T KOG2076|consen  541 KREEFIN  547 (895)
T ss_pred             hHHHHHH
Confidence            7766433

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.52  E-value=1.2e-10  Score=123.25  Aligned_cols=527  Identities=11%  Similarity=0.024  Sum_probs=304.4

Q ss_pred             chHHhhhCCCCCCcchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC
Q 039873           17 APFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQ   96 (709)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~   96 (709)
                      |...++..|+.|+..||.+++..|+..|+.+.|. ++..|.-....   .+..+++.++......++.+.+.       +
T Consensus        12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLp---v~e~vf~~lv~sh~~And~Enpk-------e   80 (1088)
T KOG4318|consen   12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLP---VREGVFRGLVASHKEANDAENPK-------E   80 (1088)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccccc---ccchhHHHHHhcccccccccCCC-------C
Confidence            5566778899999999999999999999999998 99998887776   78888999999888888877765       6


Q ss_pred             CCcchHHHHHHHHHhCCChhHHHHHHHH-hhh------CCCCCCChhhHHHHHHHHhcCC-Cc------hHHHHHHHHHH
Q 039873           97 RNVVSYSSLMTWYLHNGFLLETLKLFKN-MVS------GDNLEPNEYIFSIVLSSCSRSG-RG------AEGRQCHGYVF  162 (709)
Q Consensus        97 ~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~------~~g~~p~~~t~~~ll~~~~~~~-~~------~~a~~~~~~~~  162 (709)
                      |-..+|+.|+.+|.+.|+... ++..++ |.+      ..|+---..-|-..+.+|...- +.      .--+.+++..+
T Consensus        81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll  159 (1088)
T KOG4318|consen   81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL  159 (1088)
T ss_pred             CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence            778899999999999998754 222222 210      1222211222222222221110 00      01122333344


Q ss_pred             HhCCCCchhHHHH----HHHHHH-hcCChHHHHHHHhhCCC-CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCh
Q 039873          163 KSGLVFCKYVRNA----LVELYT-KCLDVEMAKRLLDLLPG-YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDS  236 (709)
Q Consensus       163 ~~g~~~~~~~~~~----li~~y~-~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  236 (709)
                      +.+....+..++.    .+.-.. -...+++-........+ ++..++.+++..-.-+|+.+.|..++.+|.+.|+..+.
T Consensus       160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~  239 (1088)
T KOG4318|consen  160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA  239 (1088)
T ss_pred             HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence            4331111111111    111111 11233444444444444 78999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcC
Q 039873          237 VTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNE  316 (709)
Q Consensus       237 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g  316 (709)
                      +-|..++-+   .++......+..-|...|+.|+..|+.--+-.+.+.|....+....+.-.--....+..+..|...+.
T Consensus       240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k  316 (1088)
T KOG4318|consen  240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK  316 (1088)
T ss_pred             ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence            988888765   78888888999999999999999999888777777655333222211100001122333333311111


Q ss_pred             C-----HhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHH
Q 039873          317 Y-----FEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAA  391 (709)
Q Consensus       317 ~-----~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A  391 (709)
                      +     ..-....+++..-.|+......|. +..-....|.-+..+++-+.+..-    .....+.-+++|.     +.+
T Consensus       317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~np----t~r~s~~~V~a~~-----~~l  386 (1088)
T KOG4318|consen  317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNP----TLRDSGQNVDAFG-----ALL  386 (1088)
T ss_pred             HHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCC----ccccCcchHHHHH-----HHH
Confidence            1     122222333333334333332222 222223356666666666665421    1111111222221     234


Q ss_pred             HHHHhhcCCCChh-hHHHHHHHHHH---cCChHHHHHHHHHH------------HHC----CCCC-------CHHHHHHH
Q 039873          392 NKVFSDMRYRDII-TWNAMICGYSH---HGLGREALTLFQNM------------LAA----EERP-------NHVTFVGV  444 (709)
Q Consensus       392 ~~~f~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m------------~~~----g~~p-------d~~t~~~l  444 (709)
                      .+.|.++..+... .++ .-.+...   .....+..++....            ...    -+.|       -...-+.+
T Consensus       387 rqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql  465 (1088)
T KOG4318|consen  387 RQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQL  465 (1088)
T ss_pred             HHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHH
Confidence            4555555443222 111 1111111   11111111111111            100    0111       11123344


Q ss_pred             HHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhc
Q 039873          445 LSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPV-----KWDVVAWHTLLNASRVH  519 (709)
Q Consensus       445 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~pd~~~~~~ll~~~~~~  519 (709)
                      +..|.+.-+..++...-+.. +..-+.   ..|..||+.+....++++|..+.++...     .-|..-+..+.+...++
T Consensus       466 ~l~l~se~n~lK~l~~~eky-e~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~  541 (1088)
T KOG4318|consen  466 HLTLNSEYNKLKILCDEEKY-EDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL  541 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence            45555555555555433332 211222   4789999999999999999999877641     22344566777888888


Q ss_pred             CCchHHHHHHHHHHh---cCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCcc
Q 039873          520 QNYGFGRRIAEYILH---MDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKK  573 (709)
Q Consensus       520 g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  573 (709)
                      +....+..+.+.+.+   ..|.-..+..-+.+..+..|+.+.-.+.++-+..-|+.-
T Consensus       542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e  598 (1088)
T KOG4318|consen  542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE  598 (1088)
T ss_pred             HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence            888888888887765   234445667788888899999999999999998888754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.48  E-value=1.4e-13  Score=138.26  Aligned_cols=255  Identities=16%  Similarity=0.133  Sum_probs=108.2

Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHH-HHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCC
Q 039873          309 VAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAV-MLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGN  387 (709)
Q Consensus       309 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~  387 (709)
                      ...+.+.|++++|++++++-......|+...|-. +...+...++.+.|.+.++.+...+ +.+...+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence            3445556666666666644333322333333333 2233444566666666666666554 2245556666666 57788


Q ss_pred             HHHHHHHHhhcC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 039873          388 IEAANKVFSDMR--YRDIITWNAMICGYSHHGLGREALTLFQNMLAAE-ERPNHVTFVGVLSACGHLGLVQEGFYYLNHL  464 (709)
Q Consensus       388 ~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~  464 (709)
                      +++|.+++...-  .++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|...++..
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a  172 (280)
T PF13429_consen   93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA  172 (280)
T ss_dssp             -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            888888877653  3566677888888888999999999998877533 3446667777778888899999999999988


Q ss_pred             HHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch
Q 039873          465 MKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRSTP--VKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG  541 (709)
Q Consensus       465 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  541 (709)
                      .+.   .|+ ......++..+...|+.+++.++++...  ...|+..|..+..++...|+.++|...++++.+..|+|+.
T Consensus       173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~  249 (280)
T PF13429_consen  173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL  249 (280)
T ss_dssp             HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred             HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence            764   454 6678888999999999998777765431  1345678899999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          542 TYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       542 ~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ....+++++...|+.++|.+++++...
T Consensus       250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  250 WLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccc
Confidence            999999999999999999999887643

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.42  E-value=1.5e-10  Score=121.73  Aligned_cols=285  Identities=12%  Similarity=0.017  Sum_probs=178.8

Q ss_pred             CCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchH--HHHHHHHHHHhcCChHHHH
Q 039873          214 NECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVF--INSAMISMYGKCGKFSNAK  291 (709)
Q Consensus       214 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~  291 (709)
                      .|++++|.+.+....+..-.| ...|.....+....|+.+.+.+.+..+.+.  .|+..  ........+...|+.+.|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            577777776666654432111 222333344456778888888888887764  34432  2224466788888888888


Q ss_pred             HHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 039873          292 KVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGF  368 (709)
Q Consensus       292 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~  368 (709)
                      ..++++.+   .+......+...|.+.|++++|.+++..+.+.+..++. ....+-.                       
T Consensus       174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~-----------------------  229 (398)
T PRK10747        174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ-----------------------  229 (398)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence            88888764   35667778888888889999999999888876543221 1110000                       


Q ss_pred             CCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039873          369 KEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVL  445 (709)
Q Consensus       369 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll  445 (709)
                          .++..++....+..+.+...++++.++   ..++.....+...+...|+.++|.+++++..+  ..||....  ++
T Consensus       230 ----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l  301 (398)
T PRK10747        230 ----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LL  301 (398)
T ss_pred             ----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HH
Confidence                011111222222234455555555554   24566677777777777778888777777766  24444211  22


Q ss_pred             HHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchH
Q 039873          446 SACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWDVVAWHTLLNASRVHQNYGF  524 (709)
Q Consensus       446 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~  524 (709)
                      .+....++.+++.+..+...+++  +-|.....++..++.+.|++++|.+.|+.. ...|+...+..|...+...|+.++
T Consensus       302 ~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~  379 (398)
T PRK10747        302 IPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE  379 (398)
T ss_pred             HhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence            33334577777777777776532  233446677777788888888888877743 456777777777778888888888


Q ss_pred             HHHHHHHHHhc
Q 039873          525 GRRIAEYILHM  535 (709)
Q Consensus       525 a~~~~~~~~~~  535 (709)
                      |.+.+++.+.+
T Consensus       380 A~~~~~~~l~~  390 (398)
T PRK10747        380 AAAMRRDGLML  390 (398)
T ss_pred             HHHHHHHHHhh
Confidence            88888877664

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.41  E-value=5.2e-10  Score=119.42  Aligned_cols=350  Identities=11%  Similarity=0.115  Sum_probs=198.9

Q ss_pred             CCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 039873          214 NECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKV  293 (709)
Q Consensus       214 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~  293 (709)
                      .|+.++|..++.+..+... -+...|-++...+-..|+.+.+...+-.+--.. +.|...|..+.+...+.|.++.|.-.
T Consensus       152 rg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c  229 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC  229 (895)
T ss_pred             hCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence            3777777777777666432 244566667777777777666665543333222 44556666677777777777777777


Q ss_pred             HHhccCCCHhhHHH---HHHHHHHcCCHhHHHHHHHHHHhCCCCCCc----cchHHHHHHHhccCChhHHHHHHHHHHHh
Q 039873          294 FEGLETRNVVLWTA---MVAACFQNEYFEEALNLFCGMEYEAIRPNE----FTFAVMLNSAAGLSALRHGDLLHAHIEKS  366 (709)
Q Consensus       294 ~~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~  366 (709)
                      |.+..+.++.-|-.   -+..|-+.|+...|++.|.++.+...+.|.    .+...++..+...++-+.|.+++......
T Consensus       230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~  309 (895)
T KOG2076|consen  230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK  309 (895)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            77665533322322   245566667777777777776654221111    11122233333333334444444433331


Q ss_pred             -CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHH--HCCCCCCHH
Q 039873          367 -GFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY----RDIITWNAMICGYSHHGLGREALTLFQNML--AAEERPNHV  439 (709)
Q Consensus       367 -g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~pd~~  439 (709)
                       +-..+...++.++.+|.+...++.|......+..    +|..-|.+-     ..++     .-+.-..  ..++.++..
T Consensus       310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~-----~~~~~~~~~~~~~s~~l~  379 (895)
T KOG2076|consen  310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRR-----EEPNALCEVGKELSYDLR  379 (895)
T ss_pred             ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhcc-----ccccccccCCCCCCccch
Confidence             1122333344444444444444444443333321    111111000     0000     0000000  011223322


Q ss_pred             HHHHHHHHHhc--cccHHHHHHHHHHHHHhhC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHH
Q 039873          440 TFVGVLSACGH--LGLVQEGFYYLNHLMKQIG--IVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVK---WDVVAWHTL  512 (709)
Q Consensus       440 t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---pd~~~~~~l  512 (709)
                      .+ .+.-+..+  .+...+++..|  ... ..  ..-+...|.-+.++|...|++.+|+++|..+-..   .+...|--+
T Consensus       380 v~-rl~icL~~L~~~e~~e~ll~~--l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~  455 (895)
T KOG2076|consen  380 VI-RLMICLVHLKERELLEALLHF--LVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL  455 (895)
T ss_pred             hH-hHhhhhhcccccchHHHHHHH--HHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence            21 11112223  33333443333  222 34  3334678899999999999999999998865322   247899999


Q ss_pred             HHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCccCCceeE
Q 039873          513 LNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSW  579 (709)
Q Consensus       513 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~  579 (709)
                      ...+...|.+++|.+.+++++...|++..+-..|+.+|...|+.++|.+.+..|..-+-+..+++.|
T Consensus       456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~  522 (895)
T KOG2076|consen  456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW  522 (895)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence            9999999999999999999999999999999999999999999999999999987544434455555

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=2.1e-08  Score=99.57  Aligned_cols=478  Identities=11%  Similarity=0.041  Sum_probs=332.9

Q ss_pred             ccCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHH
Q 039873           80 KCNQISIARQLFDNMRQ---RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQ  156 (709)
Q Consensus        80 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  156 (709)
                      ..+++..|+.+|++...   +++..|-.-+..-.++.....|..+|+... ..=...|..-|. -+-.=-..|++..|++
T Consensus        85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAv-t~lPRVdqlWyK-Y~ymEE~LgNi~gaRq  162 (677)
T KOG1915|consen   85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAV-TILPRVDQLWYK-YIYMEEMLGNIAGARQ  162 (677)
T ss_pred             hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHH-HhcchHHHHHHH-HHHHHHHhcccHHHHH
Confidence            45677788888887764   566777777777778888888888888765 211112332222 2222335678888888


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhC--CCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC
Q 039873          157 CHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLL--PGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRW  234 (709)
Q Consensus       157 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  234 (709)
                      +|..-.+-  .|+...|++.|+.=.+-..++.|+.++++.  ..|++.+|--...-=-++|+...|..+|....+.  -.
T Consensus       163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~  238 (677)
T KOG1915|consen  163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG  238 (677)
T ss_pred             HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence            88877654  788888888888888888889998888874  4578888888777777888888888888877652  12


Q ss_pred             ChhhHHHHHHHH----hcCCCcHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCh---HHHHHH-----HHhccCC
Q 039873          235 DSVTYVNAFGLS----ASLKDLKLGLQVHSQMLKSDIEPD--VFINSAMISMYGKCGKF---SNAKKV-----FEGLETR  300 (709)
Q Consensus       235 ~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~---~~A~~~-----~~~m~~~  300 (709)
                      |...-..++.++    .....++.|.-++...+..- +.+  ...|..++..=-+-|+.   ++++--     ++.+...
T Consensus       239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~  317 (677)
T KOG1915|consen  239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK  317 (677)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence            223223333333    35567888888888888763 333  44555555554555654   444322     2233333


Q ss_pred             ---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCcc-------chHH---HHHHHhccCChhHHHHHHHHHHHhC
Q 039873          301 ---NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEF-------TFAV---MLNSAAGLSALRHGDLLHAHIEKSG  367 (709)
Q Consensus       301 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------t~~~---ll~~~~~~~~~~~a~~i~~~~~~~g  367 (709)
                         |-.+|--.+..--..|+.+...++|++.+.. ++|-..       .|.-   .+-.=....+.+.++++++..++. 
T Consensus       318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-  395 (677)
T KOG1915|consen  318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-  395 (677)
T ss_pred             CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence               4466777777777789999999999998854 555221       1111   111113567899999999999883 


Q ss_pred             CCCChhHHhHHHhHHH----hcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHH
Q 039873          368 FKEHLIVGNALINMYA----KGGNIEAANKVFSDMR--YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVT  440 (709)
Q Consensus       368 ~~~~~~~~~~li~~y~----~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t  440 (709)
                      ++...+++.-+=-+|+    ++.++..|.+++....  .|-..++...|..=.+.+.++....+|++.++-  .| |..+
T Consensus       396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~  473 (677)
T KOG1915|consen  396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYA  473 (677)
T ss_pred             cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHH
Confidence            4556666666655565    5789999999998766  477778888888888999999999999999994  45 6678


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH--
Q 039873          441 FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWDVVAWHTLLNASR--  517 (709)
Q Consensus       441 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd~~~~~~ll~~~~--  517 (709)
                      |.....--...|+.+.|..+|..++.+-.+......|.+.|+-=..+|.++.|..+++.+ ...+..-+|-++..--.  
T Consensus       474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~  553 (677)
T KOG1915|consen  474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASA  553 (677)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccc
Confidence            888777778899999999999998876555555678889999999999999999998865 22345568877765322  


Q ss_pred             ---hcC-----------CchHHHHHHHHHHhc----CCCC--chhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          518 ---VHQ-----------NYGFGRRIAEYILHM----DPND--VGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       518 ---~~g-----------~~~~a~~~~~~~~~~----~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                         +.+           +...|..+|+.+...    +|..  ....-.+.++=...|...+...+-+.|++
T Consensus       554 ~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk  624 (677)
T KOG1915|consen  554 SEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK  624 (677)
T ss_pred             cccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence               333           567788899887653    3321  22333455566677888888888888875

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=6.7e-10  Score=110.48  Aligned_cols=404  Identities=12%  Similarity=0.007  Sum_probs=221.7

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCC-hhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCc-hhHHHHHHHH
Q 039873          102 YSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPN-EYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFC-KYVRNALVEL  179 (709)
Q Consensus       102 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~  179 (709)
                      +-..-+-|.++|.+++|++.|.+...   ..|| +.-|...-.+|...|+++...+--...++.  .|+ +-.+..-..+
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A  192 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA  192 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence            33345567889999999999999873   6788 666777777778889999888766666554  444 3345555677


Q ss_pred             HHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHH---------HHh--CCCCCChhhHHHHHHHHhc
Q 039873          180 YTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGK---------MVS--GSVRWDSVTYVNAFGLSAS  248 (709)
Q Consensus       180 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~---------m~~--~g~~p~~~t~~~ll~~~~~  248 (709)
                      +-..|++++|+.=         +|-.++..++-.+.-.--+.+++.+         |.+  ..+-|+.....+.+..+-.
T Consensus       193 ~E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~  263 (606)
T KOG0547|consen  193 HEQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA  263 (606)
T ss_pred             HHhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence            7778888777531         2223333333222222222222222         111  1233444444444433321


Q ss_pred             CCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc-CChHHHHHHHHhcc-------CCC---------HhhHHHHHHH
Q 039873          249 LKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKC-GKFSNAKKVFEGLE-------TRN---------VVLWTAMVAA  311 (709)
Q Consensus       249 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~m~-------~~~---------~~~~~~li~~  311 (709)
                      .-..        .+...+-..|...-..+=..|... ..+..|...+.+-.       ..+         ..+.+....-
T Consensus       264 ~~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF  335 (606)
T KOG0547|consen  264 DPKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF  335 (606)
T ss_pred             cccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence            1000        000000001111111111111111 01222222222110       001         0111111111


Q ss_pred             HHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHH
Q 039873          312 CFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAA  391 (709)
Q Consensus       312 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A  391 (709)
                      +.-.|+..+|.+.|+..                                   ++....+ ...|--+..+|....+.++-
T Consensus       336 ~fL~g~~~~a~~d~~~~-----------------------------------I~l~~~~-~~lyI~~a~~y~d~~~~~~~  379 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAA-----------------------------------IKLDPAF-NSLYIKRAAAYADENQSEKM  379 (606)
T ss_pred             hhhcCCchhhhhhHHHH-----------------------------------HhcCccc-chHHHHHHHHHhhhhccHHH
Confidence            22234444444444444                                   4432111 11133334455555555555


Q ss_pred             HHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 039873          392 NKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQ  467 (709)
Q Consensus       392 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  467 (709)
                      ...|++..+   .|..+|.--...+.-.+++++|..=|++.+.  +.|+ ...|..+-.+..+.+.++++...|+...++
T Consensus       380 ~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk  457 (606)
T KOG0547|consen  380 WKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK  457 (606)
T ss_pred             HHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555555442   2333444444444445567777777777766  5564 446766666777778888888888887664


Q ss_pred             hCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCC---------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 039873          468 IGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS-TPVKWD---------VVAWHTLLNASRVHQNYGFGRRIAEYILHMDP  537 (709)
Q Consensus       468 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~pd---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  537 (709)
                        ++..+++|+-....+...++++.|.+.|+. +.++|+         +.+-.+++- .+-.+++..|+.+++++++++|
T Consensus       458 --FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dp  534 (606)
T KOG0547|consen  458 --FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDP  534 (606)
T ss_pred             --CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCc
Confidence              444556778888888888888888888763 344444         122222222 2234899999999999999999


Q ss_pred             CCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          538 NDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       538 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      .....|..|+.+-...|+.++|.++|+....
T Consensus       535 kce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  535 KCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9989999999999999999999999987653

>TIGR00540 hemY_coli hemY protein

Probab=99.38  E-value=1.1e-09  Score=115.87  Aligned_cols=290  Identities=11%  Similarity=0.017  Sum_probs=180.2

Q ss_pred             hCCCccHHHHHHHHHHhCCCCCChh-hHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHH
Q 039873          213 ENECFRGGVEVLGKMVSGSVRWDSV-TYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAK  291 (709)
Q Consensus       213 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~  291 (709)
                      ..|+++.|.+.+.+..+.  .|+.. .+.....+....|+.+.+.+.+....+..-.+...+.-.....+...|+.+.|.
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            478888888888877664  34433 334445666777888888888888776532222334455577778888888888


Q ss_pred             HHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 039873          292 KVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGF  368 (709)
Q Consensus       292 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~  368 (709)
                      ..++.+.+   .+...+..+...|.+.|++++|.+++..+.+.++.+.. .+..+-.                       
T Consensus       174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~-----------------------  229 (409)
T TIGR00540       174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ-----------------------  229 (409)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence            88887764   25566777788888888888888888888876532211 1110000                       


Q ss_pred             CCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---H
Q 039873          369 KEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTF---V  442 (709)
Q Consensus       369 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~---~  442 (709)
                          ..+..++..-......+...+.++..++   .+...+..+...+...|+.++|.+.+++..+.  .||....   .
T Consensus       230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~  303 (409)
T TIGR00540       230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL  303 (409)
T ss_pred             ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence                0011111111112234445555555553   47778888888888899999999998888884  4554321   1


Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHH---hCCCCCCHHHHHHHHHHHHhc
Q 039873          443 GVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMR---STPVKWDVVAWHTLLNASRVH  519 (709)
Q Consensus       443 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~~pd~~~~~~ll~~~~~~  519 (709)
                      .........++.+.+.+.++...+..+-.|+.....++...+.+.|++++|.+.|+   .....||...+..+...+.+.
T Consensus       304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~  383 (409)
T TIGR00540       304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA  383 (409)
T ss_pred             HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence            11112233466677777777765543333332455567777777777777777777   334456666666666677777


Q ss_pred             CCchHHHHHHHHHHh
Q 039873          520 QNYGFGRRIAEYILH  534 (709)
Q Consensus       520 g~~~~a~~~~~~~~~  534 (709)
                      |+.++|.+++++.+.
T Consensus       384 g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       384 GDKAEAAAMRQDSLG  398 (409)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            777777777776544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=1e-10  Score=120.99  Aligned_cols=162  Identities=14%  Similarity=0.027  Sum_probs=94.6

Q ss_pred             hhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 039873          372 LIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWN---AMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSA  447 (709)
Q Consensus       372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a  447 (709)
                      .++|+.+..=+....++|.|...|+.....|..-||   -+...|.+.++++.|+-.|++..+  +.| |.+....+...
T Consensus       455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~  532 (638)
T KOG1126|consen  455 AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRI  532 (638)
T ss_pred             chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHH
Confidence            344444444455555666666666665544443333   344555666666666666666555  344 23344444444


Q ss_pred             HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHH
Q 039873          448 CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRR  527 (709)
Q Consensus       448 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~  527 (709)
                      +-+.|..++|+++++.+..   +.|.                               |+..---.+..+...+++++|.+
T Consensus       533 ~~~~k~~d~AL~~~~~A~~---ld~k-------------------------------n~l~~~~~~~il~~~~~~~eal~  578 (638)
T KOG1126|consen  533 QHQLKRKDKALQLYEKAIH---LDPK-------------------------------NPLCKYHRASILFSLGRYVEALQ  578 (638)
T ss_pred             HHHhhhhhHHHHHHHHHHh---cCCC-------------------------------CchhHHHHHHHHHhhcchHHHHH
Confidence            4455555555555554432   1111                               22222223333445677888888


Q ss_pred             HHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          528 IAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       528 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      .++++.++-|++...|..++.+|-+.|+.+.|..-|.-|.+-
T Consensus       579 ~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  579 ELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            888888888888888888888888888888888877777653

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.36  E-value=3.5e-10  Score=110.97  Aligned_cols=414  Identities=12%  Similarity=0.059  Sum_probs=248.5

Q ss_pred             CchHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCChHHHHHHHhhC----CCCC----cccHHHHHHHHHhCCCccHH
Q 039873          150 RGAEGRQCHGYVFKSGLVFCKYVR-NALVELYTKCLDVEMAKRLLDLL----PGYD----VFEYNSVLNGLIENECFRGG  220 (709)
Q Consensus       150 ~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~~----~~~~----~~~~~~li~~~~~~g~~~~A  220 (709)
                      ...+|...++.+++...-|+.-.. -.+-+.|.+...+..|.+.++..    +.-+    +...|.+--.+++.|+++.|
T Consensus       216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da  295 (840)
T KOG2003|consen  216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA  295 (840)
T ss_pred             HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence            344555555555555444443221 11223455555666666655432    2211    11233333456677777777


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCC------------CchHHHHHHH-----HHHHh
Q 039873          221 VEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIE------------PDVFINSAMI-----SMYGK  283 (709)
Q Consensus       221 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~~~~~li-----~~y~~  283 (709)
                      +.-|+...+.  .|+-.+-..++-++...|+-+..++.|..|+.....            |+....|--|     .-.-+
T Consensus       296 insfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek  373 (840)
T KOG2003|consen  296 INSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK  373 (840)
T ss_pred             HhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence            7777766553  566665545555555667777777777776654322            2222222211     11111


Q ss_pred             cC--ChHHHH----HHHHhccCCCHh---hHH------------------HHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 039873          284 CG--KFSNAK----KVFEGLETRNVV---LWT------------------AMVAACFQNEYFEEALNLFCGMEYEAIRPN  336 (709)
Q Consensus       284 ~g--~~~~A~----~~~~~m~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~~~m~~~g~~pd  336 (709)
                      ..  +.++++    ++..-+..++-.   -|.                  .-..-|.++|+++.|+++++-..+..-+.-
T Consensus       374 ~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~  453 (840)
T KOG2003|consen  374 ENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA  453 (840)
T ss_pred             hhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence            11  111111    111111122210   011                  112357899999999999988765432221


Q ss_pred             c--cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHH---H
Q 039873          337 E--FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMI---C  411 (709)
Q Consensus       337 ~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~  411 (709)
                      .  .+-.+++.-.....++-.|.++-+.++... .-+....+.-.+.-...|++++|.+.|++....|...-.+|.   .
T Consensus       454 saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl  532 (840)
T KOG2003|consen  454 SAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL  532 (840)
T ss_pred             HHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc
Confidence            1  122223333333456777777766665432 122222222223334579999999999999887776555543   3


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHH
Q 039873          412 GYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLD  491 (709)
Q Consensus       412 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  491 (709)
                      .+-..|+.++|++.|-++..- +..+...+..+.+.|-...+..+|++++.+...  -++.|+.+.+-|.++|-+.|+-.
T Consensus       533 t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdks  609 (840)
T KOG2003|consen  533 TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKS  609 (840)
T ss_pred             cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchh
Confidence            467789999999999888663 344556777888888889999999999877632  44556788999999999999999


Q ss_pred             HHHHH-HHhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          492 EAEKF-MRSTPVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       492 ~A~~~-~~~~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      +|.+. +++...-| +..+..-|..-|....-.+.++..|+++.-+.|+...--..+...+-+.|++..|..+++....+
T Consensus       610 qafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  610 QAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK  689 (840)
T ss_pred             hhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            99987 44443323 44455546666666777899999999999999976544445556667899999999999998764

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.36  E-value=4.4e-10  Score=118.30  Aligned_cols=275  Identities=12%  Similarity=0.031  Sum_probs=200.9

Q ss_pred             cCChHHHHHHHHhccCC--C-HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchH--HHHHHHhccCChhHHHH
Q 039873          284 CGKFSNAKKVFEGLETR--N-VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFA--VMLNSAAGLSALRHGDL  358 (709)
Q Consensus       284 ~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~~~~~~~~~~~a~~  358 (709)
                      .|+++.|++.+....+.  + ...+-.......+.|++++|.+.|.++.+.  .|+.....  .....+...|+.+.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            57888888777766543  2 233333334447888888888888888753  45554333  22456677888888888


Q ss_pred             HHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCCh-----------hhHHHHHHHHHHcCChHHHHHHHH
Q 039873          359 LHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDI-----------ITWNAMICGYSHHGLGREALTLFQ  427 (709)
Q Consensus       359 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~  427 (709)
                      .++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+...           ..|..++.......+.+...++++
T Consensus       175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            888888776 66778888899999999999999999888874321           133444444444555666667777


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-
Q 039873          428 NMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-  505 (709)
Q Consensus       428 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-  505 (709)
                      .+-.. .+.+......+..++...|+.++|...++...+   ..|+....  ++......|+.+++.+..++. ...|| 
T Consensus       254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~  327 (398)
T PRK10747        254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT  327 (398)
T ss_pred             hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence            66442 345677888889999999999999999988765   34554222  223333559999999988754 23455 


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +..+.++...|...+++++|.+.|+++++.+|++ ..|..|..++.+.|+.++|.+++++-..
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6667788889999999999999999999999975 6788999999999999999999987653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.36  E-value=3.7e-12  Score=127.92  Aligned_cols=253  Identities=16%  Similarity=0.126  Sum_probs=78.8

Q ss_pred             HHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHH-HHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 039873          208 LNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNA-FGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGK  286 (709)
Q Consensus       208 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  286 (709)
                      ...+.+.|++++|++++.+-......|+...|..+ ...+...++.+.|.+.++.+.+.+ +.+...+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence            44455566666666666544333223444433332 233344566666666666666554 2244455555555 56667


Q ss_pred             hHHHHHHHHhccC--CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCCCccchHHHHHHHhccCChhHHHHHHHHH
Q 039873          287 FSNAKKVFEGLET--RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEA-IRPNEFTFAVMLNSAAGLSALRHGDLLHAHI  363 (709)
Q Consensus       287 ~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~  363 (709)
                      .++|.++++..-+  ++...+..++..+.+.++++++.+++++..... .+.+...|..+...+.+.|+.+.|...++.+
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a  172 (280)
T PF13429_consen   93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA  172 (280)
T ss_dssp             -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7777666655432  345556666666777777777777777665422 2334444555555556666666666666666


Q ss_pred             HHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 039873          364 EKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVT  440 (709)
Q Consensus       364 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t  440 (709)
                      ++.. +.|..+.+.++..+...|+.+++.+++....   ..|...|..+..+|...|++++|+..|++..... +.|..+
T Consensus       173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~  250 (280)
T PF13429_consen  173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLW  250 (280)
T ss_dssp             HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHH
T ss_pred             HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccc
Confidence            6654 3345566666666666666666555555443   2455566666667777777777777777766531 234555


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHH
Q 039873          441 FVGVLSACGHLGLVQEGFYYLNHL  464 (709)
Q Consensus       441 ~~~ll~a~~~~g~~~~a~~~~~~~  464 (709)
                      ...+..++...|..++|.++....
T Consensus       251 ~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  251 LLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHHHT---------------
T ss_pred             cccccccccccccccccccccccc
Confidence            666666666677777766665554

>TIGR00540 hemY_coli hemY protein

Probab=99.35  E-value=6.8e-10  Score=117.54  Aligned_cols=281  Identities=8%  Similarity=-0.006  Sum_probs=190.6

Q ss_pred             HhcCChHHHHHHHhhCCCC--Cc-ccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChh--hHHHHHHHHhcCCCcHHH
Q 039873          181 TKCLDVEMAKRLLDLLPGY--DV-FEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSV--TYVNAFGLSASLKDLKLG  255 (709)
Q Consensus       181 ~~~g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a  255 (709)
                      ...|+++.|++.+.+..+.  +. ..+-.....+.+.|+++.|.+.|.+..+..  |+..  .-..........|+++.|
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence            3679999999999887653  22 223344567778899999999999987653  4543  333346777889999999


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCC---HhhHHHH----HHHHHHcCCHhHHHHHHHHH
Q 039873          256 LQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRN---VVLWTAM----VAACFQNEYFEEALNLFCGM  328 (709)
Q Consensus       256 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~l----i~~~~~~g~~~~A~~~~~~m  328 (709)
                      .+.++.+.+.. +.+..+...+..+|.+.|++++|.+.++.+.+..   ...+..+    ..++...+..+++.+.+..+
T Consensus       173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~  251 (409)
T TIGR00540       173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW  251 (409)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            99999999986 6677889999999999999999999999987542   2222111    11112112222222222222


Q ss_pred             HhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CChhh-
Q 039873          329 EYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--RDIIT-  405 (709)
Q Consensus       329 ~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~-  405 (709)
                      ....  |                             + ..+.+...+..+...+...|+.++|.+++++..+  ||... 
T Consensus       252 ~~~~--p-----------------------------~-~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~  299 (409)
T TIGR00540       252 WKNQ--P-----------------------------R-HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI  299 (409)
T ss_pred             HHHC--C-----------------------------H-HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence            2110  1                             0 0123566666777777778888888887777654  33221 


Q ss_pred             --HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHH
Q 039873          406 --WNAMICGYSHHGLGREALTLFQNMLAAEERPNHV---TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCI  480 (709)
Q Consensus       406 --~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l  480 (709)
                        +..........++.+.+++.+++..+.  .|+..   ...++...|.+.|++++|.++|+.... ....|+...+..+
T Consensus       300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~L  376 (409)
T TIGR00540       300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMA  376 (409)
T ss_pred             hhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHH
Confidence              122222333456778888888887763  55544   455777888999999999999985322 4567888888899


Q ss_pred             HHHHHhcCCHHHHHHHHHh
Q 039873          481 VGLLSKAGLLDEAEKFMRS  499 (709)
Q Consensus       481 i~~~~~~g~~~~A~~~~~~  499 (709)
                      ...+.+.|+.++|.+++++
T Consensus       377 a~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       377 ADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             HHHHHHcCCHHHHHHHHHH
Confidence            9999999999999998875

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=2e-09  Score=106.46  Aligned_cols=191  Identities=16%  Similarity=0.198  Sum_probs=145.1

Q ss_pred             hhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 039873          372 LIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSA  447 (709)
Q Consensus       372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a  447 (709)
                      +.+...+.+-|+-.++.++|...|++..+   +-...|+.|..-|....+...|++-+++..+  +.| |...|-++..+
T Consensus       330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQa  407 (559)
T KOG1155|consen  330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQA  407 (559)
T ss_pred             ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHH
Confidence            45566677778888888888888887764   3346888888888888888899999998888  445 67788889999


Q ss_pred             HhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCchH
Q 039873          448 CGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRSTPV--KWDVVAWHTLLNASRVHQNYGF  524 (709)
Q Consensus       448 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~pd~~~~~~ll~~~~~~g~~~~  524 (709)
                      |.-.+...-|+-+|++..+   ..| |...|.+|.+.|.+.+++++|.+.|...-.  ..+...+..|...+.+.++.++
T Consensus       408 Yeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e  484 (559)
T KOG1155|consen  408 YEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE  484 (559)
T ss_pred             HHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence            9888888888888888743   444 577888999999999999999988875421  2345778888888888889999


Q ss_pred             HHHHHHHHHh-------cCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873          525 GRRIAEYILH-------MDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK  567 (709)
Q Consensus       525 a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  567 (709)
                      |.+.+++-++       .+|.-..+-.-|..-+.+.+++++|...-....
T Consensus       485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL  534 (559)
T ss_pred             HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence            9988888776       223222333456777788888888887665553

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=8.8e-11  Score=121.46  Aligned_cols=243  Identities=11%  Similarity=0.070  Sum_probs=186.4

Q ss_pred             CHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhC--CCCChhHHhHHHhHHHhcCCHHH-HHH
Q 039873          317 YFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSG--FKEHLIVGNALINMYAKGGNIEA-ANK  393 (709)
Q Consensus       317 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~-A~~  393 (709)
                      +.++|+.+|...... +.-.......+..+|...+++++++.+|+.+.+..  .-.+..+|.+.+--+-+.=.+.. |..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~  412 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD  412 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence            467888888884432 22233455667778888888888888888887643  12355666666544332211111 222


Q ss_pred             HHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC
Q 039873          394 VFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP  472 (709)
Q Consensus       394 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p  472 (709)
                      +.+ +....+.+|-++..+|.-+++.+.|++.|++..+  +.| ...+|+.+..-+.....+|.|...|+..     +..
T Consensus       413 Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A-----l~~  484 (638)
T KOG1126|consen  413 LID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA-----LGV  484 (638)
T ss_pred             HHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh-----hcC
Confidence            222 2234678999999999999999999999999988  677 5678888888888889999999999875     345


Q ss_pred             ChHHHHH---HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHH
Q 039873          473 GLEHYTC---IVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLS  547 (709)
Q Consensus       473 ~~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  547 (709)
                      +..+|++   |.-.|.|.++++.|+-.|++. .+.|. .+....+...+.+.|+.++|+++++++..++|.|+-.-+.-+
T Consensus       485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~  564 (638)
T KOG1126|consen  485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA  564 (638)
T ss_pred             CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence            5567776   456789999999999999854 56675 566666777888999999999999999999999999999999


Q ss_pred             HHhhhcCCchhHHHHHHHHHh
Q 039873          548 NMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       548 ~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      .++...+++++|.+.++++++
T Consensus       565 ~il~~~~~~~eal~~LEeLk~  585 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKE  585 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHH
Confidence            999999999999999999986

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=1e-08  Score=101.74  Aligned_cols=379  Identities=10%  Similarity=0.045  Sum_probs=208.8

Q ss_pred             CChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHH
Q 039873          184 LDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHS  260 (709)
Q Consensus       184 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  260 (709)
                      +++..|+.+|++...   ++...|---+..=.++.+...|..++++.+..=...|..-| --+..=-..|++..|+++|+
T Consensus        87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqife  165 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIFE  165 (677)
T ss_pred             HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHHH
Confidence            344455555554433   34444555555555555555555555555443222222211 11112223466666666666


Q ss_pred             HHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhc--cCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCcc
Q 039873          261 QMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGL--ETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEF  338 (709)
Q Consensus       261 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~  338 (709)
                      .-.+.  .|+...|++.|+.=.+-..++.|+.++++.  ..|++.+|--...-=.++|....|..+|....+.  -.|..
T Consensus       166 rW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~  241 (677)
T KOG1915|consen  166 RWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDE  241 (677)
T ss_pred             HHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHH
Confidence            55543  566666666666666666666666666663  3466666666555555666666666666655442  11222


Q ss_pred             chHHHHHHH----hccCChhHHHHHHHHHHHhCCCCC--hhHHhHHHhHHHhcCCHHHHHHH--------HhhcCCC---
Q 039873          339 TFAVMLNSA----AGLSALRHGDLLHAHIEKSGFKEH--LIVGNALINMYAKGGNIEAANKV--------FSDMRYR---  401 (709)
Q Consensus       339 t~~~ll~~~----~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~--------f~~~~~~---  401 (709)
                      .-..+..++    .....++.|+-++..++..= +.+  ...|..+...--+-|+.....++        ++.+...   
T Consensus       242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~  320 (677)
T KOG1915|consen  242 EAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY  320 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence            222223333    23445666666666666542 222  33444444444444543333222        2222222   


Q ss_pred             ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---hccccHHHHHHHHHHHHHhhCCC
Q 039873          402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-------TFVGVLSAC---GHLGLVQEGFYYLNHLMKQIGIV  471 (709)
Q Consensus       402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~  471 (709)
                      |-.+|--.+..-...|+.+...++|++.+.. ++|-..       .|.-+=-+|   ....+++.+.++++..++  -++
T Consensus       321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIP  397 (677)
T KOG1915|consen  321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIP  397 (677)
T ss_pred             CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcC
Confidence            4456666666666677777777777777664 455211       121111122   345667777777777654  233


Q ss_pred             CChHHHHHHHHHH----HhcCCHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873          472 PGLEHYTCIVGLL----SKAGLLDEAEKFMR-STPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL  546 (709)
Q Consensus       472 p~~~~~~~li~~~----~~~g~~~~A~~~~~-~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  546 (709)
                      ....++.-+--+|    .|+.++..|.+++. .+|.-|..-++...|..-.+.++++....++++.++..|.+..++.-.
T Consensus       398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky  477 (677)
T KOG1915|consen  398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY  477 (677)
T ss_pred             cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence            3344554444444    36677777777765 446567777777777777777777777777777777777777777777


Q ss_pred             HHHhhhcCCchhHHHHHHHHHhCCC
Q 039873          547 SNMYAKEKRWDGVSKIRKLMKVRKV  571 (709)
Q Consensus       547 ~~~~~~~g~~~~a~~~~~~m~~~~~  571 (709)
                      +..=...|+++.|+.+|....+...
T Consensus       478 aElE~~LgdtdRaRaifelAi~qp~  502 (677)
T KOG1915|consen  478 AELETSLGDTDRARAIFELAISQPA  502 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcCcc
Confidence            7777777777777777777766543

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.31  E-value=9.5e-10  Score=116.73  Aligned_cols=443  Identities=13%  Similarity=0.063  Sum_probs=226.4

Q ss_pred             CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHH
Q 039873           96 QRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNA  175 (709)
Q Consensus        96 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  175 (709)
                      .||.+||..+|.-||..|+.+.|- +|..|+ -...+.+...|+.++.+....++.+.++           .|-..+|+.
T Consensus        22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~   88 (1088)
T KOG4318|consen   22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN   88 (1088)
T ss_pred             CCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence            477788888888888888888777 888887 6667777888888888888777777665           567778888


Q ss_pred             HHHHHHhcCChHH---HHHHHhhCCC---------------------C-CcccHHHHHHHHHhCCCccHHHHHHHHHHhC
Q 039873          176 LVELYTKCLDVEM---AKRLLDLLPG---------------------Y-DVFEYNSVLNGLIENECFRGGVEVLGKMVSG  230 (709)
Q Consensus       176 li~~y~~~g~~~~---A~~~f~~~~~---------------------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  230 (709)
                      |...|.+.||+..   .++.++.+..                     | -...-...|.-.+-.|-++.+++++..|...
T Consensus        89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs  168 (1088)
T KOG4318|consen   89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS  168 (1088)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence            8888888888654   1221111100                     0 0000112223333344444444444444221


Q ss_pred             CCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCH----hhHH
Q 039873          231 SVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNV----VLWT  306 (709)
Q Consensus       231 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~~~~  306 (709)
                      .-  +. ++..+++-+.....  -.+++.......--.++..++.++++.-.-.|+++.|..++.+|.++..    .-+-
T Consensus       169 a~--~~-p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw  243 (1088)
T KOG4318|consen  169 AW--NA-PFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW  243 (1088)
T ss_pred             cc--cc-hHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence            10  00 11112333332222  1222222222211136666666666666666666666666666665421    1122


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCC----hhHHhHHHhHH
Q 039873          307 AMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEH----LIVGNALINMY  382 (709)
Q Consensus       307 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~----~~~~~~li~~y  382 (709)
                      .++-|   .++...+..+++-|.+.|+.|+..|+..-+..|.+.|....+..        |.+.+    ..++..+..+.
T Consensus       244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~sq~~hg~tAavrsaa~rg~  312 (1088)
T KOG4318|consen  244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GSQLAHGFTAAVRSAACRGL  312 (1088)
T ss_pred             hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------ccchhhhhhHHHHHHHhccc
Confidence            23222   55555666666666666666666666666655555443222211        11111    11222222211


Q ss_pred             HhcCCHHH--HHHHHhhcC-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHH-HHHHHHHHHhc
Q 039873          383 AKGGNIEA--ANKVFSDMR-------YRDIITWNAMICGYSHHGLGREALTLFQNMLAA--EERPNHV-TFVGVLSACGH  450 (709)
Q Consensus       383 ~~~g~~~~--A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~-t~~~ll~a~~~  450 (709)
                      .....++.  +.-+....+       +....+|... .-...+|+.++..++-..|..-  .+.|+.+ .|..++.-|-+
T Consensus       313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr  391 (1088)
T KOG4318|consen  313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR  391 (1088)
T ss_pred             HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence            11111111  011111111       1122344333 3334478888888888877542  1334322 45444443322


Q ss_pred             cc----------------------cHHHHHHHHHHHHHh---------------hCCCC-------ChHHHHHHHHHHHh
Q 039873          451 LG----------------------LVQEGFYYLNHLMKQ---------------IGIVP-------GLEHYTCIVGLLSK  486 (709)
Q Consensus       451 ~g----------------------~~~~a~~~~~~~~~~---------------~~~~p-------~~~~~~~li~~~~~  486 (709)
                      .-                      +..+..+......+.               ....|       -...-+.++..+.+
T Consensus       392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s  471 (1088)
T KOG4318|consen  392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS  471 (1088)
T ss_pred             HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence            11                      011111111100000               00011       01123344445555


Q ss_pred             cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC---CCchhHHHHHHHhhhcCCchhHHHHH
Q 039873          487 AGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDP---NDVGTYILLSNMYAKEKRWDGVSKIR  563 (709)
Q Consensus       487 ~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~  563 (709)
                      .-+..+++...++..-.-=...|..||.-|..|...+.|....+++...+.   -+..-+..+.+.+.+.+...++..+.
T Consensus       472 e~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL  551 (1088)
T KOG4318|consen  472 EYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL  551 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence            555555554332221000125678899999999999999999888776542   14457889999999999999999999


Q ss_pred             HHHHh
Q 039873          564 KLMKV  568 (709)
Q Consensus       564 ~~m~~  568 (709)
                      ++|.+
T Consensus       552 ~e~ks  556 (1088)
T KOG4318|consen  552 YEDKS  556 (1088)
T ss_pred             hhhhH
Confidence            99987

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=2.2e-08  Score=101.91  Aligned_cols=260  Identities=13%  Similarity=0.058  Sum_probs=203.8

Q ss_pred             hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHH
Q 039873          303 VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMY  382 (709)
Q Consensus       303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y  382 (709)
                      ...-.-..-+...+++.+..+++....+.. ++....+..-|..+...|+...-..+-..+++. .+....+|-++.-.|
T Consensus       245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YY  322 (611)
T KOG1173|consen  245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYY  322 (611)
T ss_pred             HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHH
Confidence            333344455677899999999999988642 445555555666777888777666666666665 366778899998889


Q ss_pred             HhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 039873          383 AKGGNIEAANKVFSDMRYRDI---ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFY  459 (709)
Q Consensus       383 ~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~  459 (709)
                      .-.|+..+|++.|.+...-|.   ..|-.....|+-.|..++|+..+...-+. ++-...-+.-+..-|.+.++.+.|.+
T Consensus       323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~  401 (611)
T KOG1173|consen  323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEK  401 (611)
T ss_pred             HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHH
Confidence            999999999999998774433   58999999999999999999999887763 22233344455667888999999999


Q ss_pred             HHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--C---CCC----HHHHHHHHHHHHhcCCchHHHHHH
Q 039873          460 YLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRSTP--V---KWD----VVAWHTLLNASRVHQNYGFGRRIA  529 (709)
Q Consensus       460 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~---~pd----~~~~~~ll~~~~~~g~~~~a~~~~  529 (709)
                      +|.++.   ++.|+ +.+.+-+.-+.-..+.+.+|..+|+..-  +   .+.    ..+|+.|..+|++.+.+++|+..+
T Consensus       402 Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~  478 (611)
T KOG1173|consen  402 FFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY  478 (611)
T ss_pred             HHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence            999874   56554 5567777777778899999999987431  1   111    345777888999999999999999


Q ss_pred             HHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          530 EYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       530 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ++.+.+.|.++.+|.+++-+|...|+++.|...|.+...
T Consensus       479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            999999999999999999999999999999999988764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=3.8e-09  Score=99.97  Aligned_cols=285  Identities=12%  Similarity=0.089  Sum_probs=179.1

Q ss_pred             CCCccHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhcCChHH
Q 039873          214 NECFRGGVEVLGKMVSGSVRWD-SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPD---VFINSAMISMYGKCGKFSN  289 (709)
Q Consensus       214 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~  289 (709)
                      +.++++|+++|-+|.+.  .|. ..+-.++.+.+.+.|..+.|.++|..+.++.--+.   ....-.|..-|...|-+|.
T Consensus        48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            57899999999999874  222 23446777888999999999999999987632221   2345567788999999999


Q ss_pred             HHHHHHhccCCCH---hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHh
Q 039873          290 AKKVFEGLETRNV---VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKS  366 (709)
Q Consensus       290 A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~  366 (709)
                      |+.+|..+.+.+.   ....-|+..|-+..+|++|++.-+++...+-.+..+    -|.-                    
T Consensus       126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----eIAq--------------------  181 (389)
T COG2956         126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----EIAQ--------------------  181 (389)
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----HHHH--------------------
Confidence            9999999887444   455667899999999999999999888765444332    1111                    


Q ss_pred             CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 039873          367 GFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYR---DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVG  443 (709)
Q Consensus       367 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~  443 (709)
                             .|.-|...+....+.+.|..++.+..+.   .+..--.+...+...|+++.|.+.++...+++..--..+...
T Consensus       182 -------fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~  254 (389)
T COG2956         182 -------FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM  254 (389)
T ss_pred             -------HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence                   1122223333344555566666555432   222333344556666777777777777766432222335556


Q ss_pred             HHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh---c
Q 039873          444 VLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF-MRSTPVKWDVVAWHTLLNASRV---H  519 (709)
Q Consensus       444 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~pd~~~~~~ll~~~~~---~  519 (709)
                      +..+|.+.|+.+++..++..+++.   .++...-..|.+.-....-.++|... .+.+.-+|+...+.-|+..-..   .
T Consensus       255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee  331 (389)
T COG2956         255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE  331 (389)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence            666777777777777777766542   33333444455544444455555554 3445556777777777765433   2


Q ss_pred             CCchHHHHHHHHHHh
Q 039873          520 QNYGFGRRIAEYILH  534 (709)
Q Consensus       520 g~~~~a~~~~~~~~~  534 (709)
                      |.......+...|..
T Consensus       332 g~~k~sL~~lr~mvg  346 (389)
T COG2956         332 GRAKESLDLLRDMVG  346 (389)
T ss_pred             cchhhhHHHHHHHHH
Confidence            334444445555543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=5.9e-08  Score=96.37  Aligned_cols=246  Identities=15%  Similarity=0.148  Sum_probs=123.5

Q ss_pred             HHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCC------CHhhHHHHHHHHHHcCC
Q 039873          244 GLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETR------NVVLWTAMVAACFQNEY  317 (709)
Q Consensus       244 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~  317 (709)
                      .++......+++.+-.......|++.+...-+-...++-...++++|+.+|+++...      |..+|+.++  |+++.+
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~  312 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence            344444455555555566666665555555444444455555666666666665542      233444333  222221


Q ss_pred             HhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhh
Q 039873          318 FEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSD  397 (709)
Q Consensus       318 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~  397 (709)
                      ..  +.++.+-...--+--..|...+.+-|+-.++-++|..+|+.+++.+ +....+++.+..-|....+...|.+.++.
T Consensus       313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr  389 (559)
T KOG1155|consen  313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR  389 (559)
T ss_pred             HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence            11  1111111110011122344444555555555555666665555554 33445555555555555555555555554


Q ss_pred             cC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC
Q 039873          398 MR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG  473 (709)
Q Consensus       398 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~  473 (709)
                      ..   .+|-..|-.|..+|.-.+.+.=|+-.|++...  ++| |...|..+...|.+.++.++|+..|.....  .-..+
T Consensus       390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte  465 (559)
T KOG1155|consen  390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTE  465 (559)
T ss_pred             HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccc
Confidence            44   23455555566666665555556666665555  344 344555555555666666666666555543  11223


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHH
Q 039873          474 LEHYTCIVGLLSKAGLLDEAEKFMR  498 (709)
Q Consensus       474 ~~~~~~li~~~~~~g~~~~A~~~~~  498 (709)
                      ...+..|.++|-+.++.++|...|.
T Consensus       466 ~~~l~~LakLye~l~d~~eAa~~ye  490 (559)
T KOG1155|consen  466 GSALVRLAKLYEELKDLNEAAQYYE  490 (559)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3455555566666666666555543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.29  E-value=1.2e-08  Score=99.64  Aligned_cols=293  Identities=12%  Similarity=0.053  Sum_probs=212.9

Q ss_pred             HHHHHHh--CCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 039873          207 VLNGLIE--NECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKC  284 (709)
Q Consensus       207 li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~  284 (709)
                      +..|..+  .|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-+++.++-+..-.++..+.-+........
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~  166 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR  166 (400)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence            4444444  689999999999977766554 3456777788889999999999999998875577888888899999999


Q ss_pred             CChHHHHHHHHhcc---CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHH
Q 039873          285 GKFSNAKKVFEGLE---TRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHA  361 (709)
Q Consensus       285 g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~  361 (709)
                      |+.+.|..-.+++.   .++..........|.+.|++.+...++.+|.+.|+--|+..                 .++- 
T Consensus       167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~le-  228 (400)
T COG3071         167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARLE-  228 (400)
T ss_pred             CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHHH-
Confidence            99999988877754   46788899999999999999999999999999886544321                 1110 


Q ss_pred             HHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 039873          362 HIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNH  438 (709)
Q Consensus       362 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~  438 (709)
                                ..+++.+++=....+..+.-...++..+   +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+-
T Consensus       229 ----------~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L  298 (400)
T COG3071         229 ----------QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL  298 (400)
T ss_pred             ----------HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH
Confidence                      1122333333333333344444555555   235666667777788888888888888888887777772


Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHH-hCCCCCCHHHHHHHHHHHH
Q 039873          439 VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMR-STPVKWDVVAWHTLLNASR  517 (709)
Q Consensus       439 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~pd~~~~~~ll~~~~  517 (709)
                      .    .+-.+.+.++.+.-.+..+...+.++..|  ..+.+|...|.+.+.|.+|.+.|+ .....|+...|+-+..++.
T Consensus       299 ~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~  372 (400)
T COG3071         299 C----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD  372 (400)
T ss_pred             H----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence            2    23356677777777777777777666666  467778888888888888888877 3456778888888888888


Q ss_pred             hcCCchHHHHHHHHHHh
Q 039873          518 VHQNYGFGRRIAEYILH  534 (709)
Q Consensus       518 ~~g~~~~a~~~~~~~~~  534 (709)
                      +.|+.+.|.+..++.+.
T Consensus       373 ~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         373 QLGEPEEAEQVRREALL  389 (400)
T ss_pred             HcCChHHHHHHHHHHHH
Confidence            88888888888777664

>PF13041 PPR_2: PPR repeat family

Probab=99.28  E-value=1.1e-11  Score=87.42  Aligned_cols=50  Identities=30%  Similarity=0.523  Sum_probs=48.2

Q ss_pred             CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 039873          401 RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGH  450 (709)
Q Consensus       401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~  450 (709)
                      ||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999999975

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.24  E-value=1.8e-09  Score=105.27  Aligned_cols=198  Identities=13%  Similarity=0.062  Sum_probs=163.3

Q ss_pred             CChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039873          370 EHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLS  446 (709)
Q Consensus       370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~  446 (709)
                      .....+..+...|.+.|++++|...|++..+   .+...+..+...|...|++++|.+.|++..+.. +.+...+..+..
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~  107 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT  107 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            3356677788899999999999999997653   346688888999999999999999999998853 334567777888


Q ss_pred             HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchH
Q 039873          447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGF  524 (709)
Q Consensus       447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~  524 (709)
                      .+...|++++|.+.+...............+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            889999999999999998763222334557778889999999999999998754 23343 6678888889999999999


Q ss_pred             HHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          525 GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       525 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      |...++++.+..|.++..+..++.++...|++++|..+.+.+..
T Consensus       188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99999999998888888888999999999999999999887754

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13041 PPR_2: PPR repeat family

Probab=99.23  E-value=1.7e-11  Score=86.33  Aligned_cols=50  Identities=22%  Similarity=0.326  Sum_probs=47.2

Q ss_pred             CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 039873          199 YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSAS  248 (709)
Q Consensus       199 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~  248 (709)
                      ||+++||++|++|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            68999999999999999999999999999999999999999999999874

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.22  E-value=1.5e-06  Score=89.93  Aligned_cols=486  Identities=12%  Similarity=0.129  Sum_probs=309.8

Q ss_pred             cchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHHH
Q 039873           30 VEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWY  109 (709)
Q Consensus        30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~  109 (709)
                      +..+..-+.....++++..-+..|+.++..=+..  ....+|...+...-..|-++-+.+++++..+-+...-+--|.-+
T Consensus       102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvt--qH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L  179 (835)
T KOG2047|consen  102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVT--QHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYL  179 (835)
T ss_pred             CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchH--hhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4567777777788899999999998888653211  45567888888888889999999999988876666678888889


Q ss_pred             HhCCChhHHHHHHHHhhhCCC------CCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCC----CCchhHHHHHHHH
Q 039873          110 LHNGFLLETLKLFKNMVSGDN------LEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGL----VFCKYVRNALVEL  179 (709)
Q Consensus       110 ~~~g~~~~A~~~~~~m~~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~  179 (709)
                      +..++.++|.+.+.... ...      -+-+...|.-+-...++..+.-....+ +.+++.|+    +.-...|++|.+-
T Consensus       180 ~~~d~~~eaa~~la~vl-n~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdY  257 (835)
T KOG2047|consen  180 AKSDRLDEAAQRLATVL-NQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADY  257 (835)
T ss_pred             HhccchHHHHHHHHHhc-CchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHH
Confidence            99999999999888876 221      123444566665555555443333322 22334443    2235689999999


Q ss_pred             HHhcCChHHHHHHHhhCCCC--CcccHHHHHHHHHhC----------------CCc------cHHHHHHHHHHhCCC---
Q 039873          180 YTKCLDVEMAKRLLDLLPGY--DVFEYNSVLNGLIEN----------------ECF------RGGVEVLGKMVSGSV---  232 (709)
Q Consensus       180 y~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~----------------g~~------~~A~~l~~~m~~~g~---  232 (709)
                      |.+.|.++.|..+|++....  .+.-++.+-+.|++-                |+.      +-.+.-|+.+...+.   
T Consensus       258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l  337 (835)
T KOG2047|consen  258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL  337 (835)
T ss_pred             HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence            99999999999999875432  222344444444321                211      122333343333211   


Q ss_pred             -------CC-ChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCC------chHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 039873          233 -------RW-DSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEP------DVFINSAMISMYGKCGKFSNAKKVFEGLE  298 (709)
Q Consensus       233 -------~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~y~~~g~~~~A~~~~~~m~  298 (709)
                             .| +..+|..-+.  ...|+..+-...+.++++.- .|      -...|..+...|-..|+++.|+.+|++..
T Consensus       338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~  414 (835)
T KOG2047|consen  338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT  414 (835)
T ss_pred             HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence                   01 1122222222  23466777778888887752 22      23468889999999999999999999976


Q ss_pred             CC---C----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCC-----------CCC------CccchHHHHHHHhccCChh
Q 039873          299 TR---N----VVLWTAMVAACFQNEYFEEALNLFCGMEYEA-----------IRP------NEFTFAVMLNSAAGLSALR  354 (709)
Q Consensus       299 ~~---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p------d~~t~~~ll~~~~~~~~~~  354 (709)
                      +-   .    ...|......=.+..+++.|+++.++....-           .++      +...|+..+..--..|-++
T Consensus       415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe  494 (835)
T KOG2047|consen  415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE  494 (835)
T ss_pred             cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence            52   2    2456666677778888999999887764211           111      1234555566666778999


Q ss_pred             HHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC----CCCh-hhHHHHHHHHHH---cCChHHHHHHH
Q 039873          355 HGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR----YRDI-ITWNAMICGYSH---HGLGREALTLF  426 (709)
Q Consensus       355 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~-~~~~~li~~~~~---~g~~~~A~~~~  426 (709)
                      ..+.+++.+++..+.....+.| ....+-....++++.+++++-.    -|++ ..||+.+.-+.+   ..+.+.|..+|
T Consensus       495 stk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF  573 (835)
T KOG2047|consen  495 STKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF  573 (835)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            9999999999887654333333 3334556777899999999755    3555 378887766554   23689999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHH--hccccHHHHHHHHHHHHH--------------------hhCCCCChHHHHH-----
Q 039873          427 QNMLAAEERPNHVTFVGVLSAC--GHLGLVQEGFYYLNHLMK--------------------QIGIVPGLEHYTC-----  479 (709)
Q Consensus       427 ~~m~~~g~~pd~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~--------------------~~~~~p~~~~~~~-----  479 (709)
                      ++..+ |.+|...-+.-|+-|-  -.-|....|..+++.+..                    .+|+......|.-     
T Consensus       574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L  652 (835)
T KOG2047|consen  574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL  652 (835)
T ss_pred             HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC
Confidence            99998 7778765444444331  233666666666665422                    2344433333322     


Q ss_pred             -----------HHHHHHhcCCHHHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCchH
Q 039873          480 -----------IVGLLSKAGLLDEAEKFMRST-P-VKW--DVVAWHTLLNASRVHQNYGF  524 (709)
Q Consensus       480 -----------li~~~~~~g~~~~A~~~~~~~-~-~~p--d~~~~~~ll~~~~~~g~~~~  524 (709)
                                 ..++=.+.|.++.|+.++.-- . ..|  +...|.+.=.--.+|||-+.
T Consensus       653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT  712 (835)
T KOG2047|consen  653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT  712 (835)
T ss_pred             ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence                       223445668888888886522 1 123  47778877777788888433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.19  E-value=5.6e-06  Score=85.83  Aligned_cols=488  Identities=13%  Similarity=0.114  Sum_probs=317.1

Q ss_pred             chhHHHHHHHHHHccCChHHHHHHHhcCCC-----CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHH
Q 039873           67 NVVLTNSLVNLYAKCNQISIARQLFDNMRQ-----RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIV  141 (709)
Q Consensus        67 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~l  141 (709)
                      -+.+|-.-+....++|++..-++.|++...     .....|...|.-....+-++-++.+|++..+   +.|  ..-.--
T Consensus       101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~~P--~~~eey  175 (835)
T KOG2047|consen  101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---VAP--EAREEY  175 (835)
T ss_pred             CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---cCH--HHHHHH
Confidence            467888889999999999999999987642     2345699999888889999999999999872   344  335666


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHhC------CCCchhHHHHHHHHHHhcCChH---HHHHHHhhCCCC--C--cccHHHHH
Q 039873          142 LSSCSRSGRGAEGRQCHGYVFKSG------LVFCKYVRNALVELYTKCLDVE---MAKRLLDLLPGY--D--VFEYNSVL  208 (709)
Q Consensus       142 l~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~~~~~--~--~~~~~~li  208 (709)
                      +.-++..+++++|.+.+..++...      ...+...|.-+.+..++.-+.-   ....++..+..+  |  ...|++|.
T Consensus       176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA  255 (835)
T KOG2047|consen  176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA  255 (835)
T ss_pred             HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence            777888999999999888876432      2556778888888877664432   345566666553  3  35799999


Q ss_pred             HHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC----------------C------CcHHHHHHHHHHHHcC
Q 039873          209 NGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASL----------------K------DLKLGLQVHSQMLKSD  266 (709)
Q Consensus       209 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~~g  266 (709)
                      +-|++.|.+++|.++|++-...-.  ...-|+.+.++|+.-                +      +++....-++.+....
T Consensus       256 dYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr  333 (835)
T KOG2047|consen  256 DYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR  333 (835)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence            999999999999999999766422  233344444444321                1      1223333444444322


Q ss_pred             -----------CCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---------CCHhhHHHHHHHHHHcCCHhHHHHHHH
Q 039873          267 -----------IEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---------RNVVLWTAMVAACFQNEYFEEALNLFC  326 (709)
Q Consensus       267 -----------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~  326 (709)
                                 -+.++..|..-+..|  .|+..+-..+|.+...         +-...|..+..-|-.+|+.+.|..+|+
T Consensus       334 ~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife  411 (835)
T KOG2047|consen  334 PLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE  411 (835)
T ss_pred             chHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence                       122333444444333  4566666677766542         123579999999999999999999999


Q ss_pred             HHHhCCCCCC---ccchHHHHHHHhccCChhHHHHHHHHHHHh-----------CCCC------ChhHHhHHHhHHHhcC
Q 039873          327 GMEYEAIRPN---EFTFAVMLNSAAGLSALRHGDLLHAHIEKS-----------GFKE------HLIVGNALINMYAKGG  386 (709)
Q Consensus       327 ~m~~~g~~pd---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----------g~~~------~~~~~~~li~~y~~~g  386 (709)
                      +..+...+--   ..+|..-...=.+..+++.|..+.+.+...           +.++      +..+|..+++.--..|
T Consensus       412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g  491 (835)
T KOG2047|consen  412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG  491 (835)
T ss_pred             HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence            9876433211   123333333344566788888877766431           1122      3446666777777899


Q ss_pred             CHHHHHHHHhhcCCCChhhHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh---ccccHHHHHH
Q 039873          387 NIEAANKVFSDMRYRDIITWNAMI---CGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACG---HLGLVQEGFY  459 (709)
Q Consensus       387 ~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~---~~g~~~~a~~  459 (709)
                      -++....+++++.+--+.|=..++   ..+-.+.-++++.+.|++-+..=-.|+.. .|+..|.-+.   ....++.|+.
T Consensus       492 tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd  571 (835)
T KOG2047|consen  492 TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD  571 (835)
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            999999999998853332222222   23456677889999998765542345543 5555555433   2347899999


Q ss_pred             HHHHHHHhhCCCCChHHHHHHHHHH----HhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCchHHHHHHHH
Q 039873          460 YLNHLMKQIGIVPGLEHYTCIVGLL----SKAGLLDEAEKFMRSTP--VKWD--VVAWHTLLNASRVHQNYGFGRRIAEY  531 (709)
Q Consensus       460 ~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~  531 (709)
                      +|++..+  |.+|.  +...+--+|    -+.|....|++++++..  +++.  ...||..|.--+..=-+.....++++
T Consensus       572 LFEqaL~--~Cpp~--~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYek  647 (835)
T KOG2047|consen  572 LFEQALD--GCPPE--HAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK  647 (835)
T ss_pred             HHHHHHh--cCCHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence            9999976  55554  333333334    35688999999998653  3333  55677777633332224456677777


Q ss_pred             HHhcCCCCchhH--HHHHHHhhhcCCchhHHHHHHHHH
Q 039873          532 ILHMDPNDVGTY--ILLSNMYAKEKRWDGVSKIRKLMK  567 (709)
Q Consensus       532 ~~~~~p~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~  567 (709)
                      +++.-|++-.--  .-.+++=.+.|..+.|+.++.--.
T Consensus       648 aIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s  685 (835)
T KOG2047|consen  648 AIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGS  685 (835)
T ss_pred             HHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence            777766543222  234566667777777777776543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.18  E-value=2.3e-08  Score=94.73  Aligned_cols=218  Identities=13%  Similarity=0.043  Sum_probs=158.9

Q ss_pred             CCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCChHH
Q 039873          112 NGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVF---CKYVRNALVELYTKCLDVEM  188 (709)
Q Consensus       112 ~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~  188 (709)
                      +..+++|+++|-+|. + +-+-+..+-.++-+.+.+.|..+.|..+|+.+.++.--+   .....-.|..-|...|-+|.
T Consensus        48 s~Q~dKAvdlF~e~l-~-~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          48 SNQPDKAVDLFLEML-Q-EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hcCcchHHHHHHHHH-h-cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            456788888888886 2 222233444556667777888888888888877653111   12234456677888999999


Q ss_pred             HHHHHhhCCCCCc---ccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChh----hHHHHHHHHhcCCCcHHHHHHHHH
Q 039873          189 AKRLLDLLPGYDV---FEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSV----TYVNAFGLSASLKDLKLGLQVHSQ  261 (709)
Q Consensus       189 A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~  261 (709)
                      |+.+|..+.+...   .....|+..|-+..+|++|++.-+++.+.+-.+..+    .|.-+........+++.|..++..
T Consensus       126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            9999998876433   345668899999999999999999998876665533    345555555667788888888888


Q ss_pred             HHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCH----hhHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 039873          262 MLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNV----VLWTAMVAACFQNEYFEEALNLFCGMEYEA  332 (709)
Q Consensus       262 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  332 (709)
                      ..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|.    .....|..+|.+.|+.++....+.++.+..
T Consensus       206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~  279 (389)
T COG2956         206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN  279 (389)
T ss_pred             HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            88765 44556666777888888999999999888887665    346667788888898888888888887654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.2e-07  Score=96.67  Aligned_cols=498  Identities=10%  Similarity=-0.004  Sum_probs=299.0

Q ss_pred             cchHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHh--cCCCCCcchHHHHHH
Q 039873           30 VEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFD--NMRQRNVVSYSSLMT  107 (709)
Q Consensus        30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~--~~~~~~~~~~~~li~  107 (709)
                      ..-+..+++-+....++..|.-+-+.+...+.+   |+  ----+..+|.-.|..+.|-.+..  .+.+.|..+......
T Consensus        16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~d---p~--d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~   90 (611)
T KOG1173|consen   16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTND---PA--DIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAK   90 (611)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCC---hH--HHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            344566666666666777777776666665533   33  33335666777777777766654  345678888888888


Q ss_pred             HHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 039873          108 WYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVE  187 (709)
Q Consensus       108 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~  187 (709)
                      .+.+...+++|+.++..-.    +.-+.+.|-..=.  +..-..+.+...+..-.+.++      .-.--..|......+
T Consensus        91 ~l~~lk~~~~al~vl~~~~----~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~essi------c~lRgk~y~al~n~~  158 (611)
T KOG1173|consen   91 CLVKLKEWDQALLVLGRGH----VETNPFSYYEKDA--ANTLELNSAGEDLMINLESSI------CYLRGKVYVALDNRE  158 (611)
T ss_pred             HHHHHHHHHHHHHHhcccc----hhhcchhhcchhh--hceeccCcccccccccchhce------eeeeeehhhhhccHH
Confidence            8899999999998887221    1111111110000  000001111100000000100      000012233344555


Q ss_pred             HHHHHHhhCCCCCcccHHHHHHHHHhCC-CccHHHHHHHHHHhC-CCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHc
Q 039873          188 MAKRLLDLLPGYDVFEYNSVLNGLIENE-CFRGGVEVLGKMVSG-SVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKS  265 (709)
Q Consensus       188 ~A~~~f~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  265 (709)
                      +|+..|.+..-.|+..+.++...-...= -..+-.++|..+.-. -.+-+......+.........-+.....-.+..-.
T Consensus       159 ~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~  238 (611)
T KOG1173|consen  159 EARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLI  238 (611)
T ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhh
Confidence            6666555544444444433322111100 011112222211000 01112222222222110000000000000001112


Q ss_pred             CCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCH---hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHH
Q 039873          266 DIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNV---VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAV  342 (709)
Q Consensus       266 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~  342 (709)
                      +...+..+.....+-+-..+++.+..++++.+.+.|+   ..+..-|.++...|+..+-..+=.+|.+. .+-...+|-+
T Consensus       239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a  317 (611)
T KOG1173|consen  239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA  317 (611)
T ss_pred             hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence            3355666677777788888999999999999887544   45555678899999988888888888865 2345688988


Q ss_pred             HHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCCh
Q 039873          343 MLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLG  419 (709)
Q Consensus       343 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~  419 (709)
                      +.--|...|...+|++.+......+ +.-...|-.+...|+-.|.-+.|...+....+   .....+--+..-|.+.+..
T Consensus       318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~  396 (611)
T KOG1173|consen  318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL  396 (611)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence            8888888899999999998887654 33455677888889999999988887765442   1111222244457788899


Q ss_pred             HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhC-CC----CChHHHHHHHHHHHhcCCHHHH
Q 039873          420 REALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIG-IV----PGLEHYTCIVGLLSKAGLLDEA  493 (709)
Q Consensus       420 ~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~----p~~~~~~~li~~~~~~g~~~~A  493 (709)
                      +-|.+.|.+...  +-|+ +..++-+.-..-+.+.+.+|..+|+....... +.    ....+++.|..+|.+++++++|
T Consensus       397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA  474 (611)
T KOG1173|consen  397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA  474 (611)
T ss_pred             HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence            999999999877  6664 55666665555667899999999998763111 11    1345688999999999999999


Q ss_pred             HHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHH
Q 039873          494 EKFMRST-PVK-WDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSN  548 (709)
Q Consensus       494 ~~~~~~~-~~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  548 (709)
                      +..+++. ... .|..++.++.-.+...|+++.|.+.|.+++.+.|+|..+-..|..
T Consensus       475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL  531 (611)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            9999853 233 468888889889999999999999999999999998655555443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.16  E-value=7.2e-09  Score=108.64  Aligned_cols=230  Identities=16%  Similarity=0.158  Sum_probs=167.2

Q ss_pred             cchHHHHHHHhccCChhHHHHHHHHHHHh-----CC-CCChh-HHhHHHhHHHhcCCHHHHHHHHhhcCC----------
Q 039873          338 FTFAVMLNSAAGLSALRHGDLLHAHIEKS-----GF-KEHLI-VGNALINMYAKGGNIEAANKVFSDMRY----------  400 (709)
Q Consensus       338 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----g~-~~~~~-~~~~li~~y~~~g~~~~A~~~f~~~~~----------  400 (709)
                      .|...+...|...|+++.|.+.++..++.     |. .+... ..+.+...|...+++++|..+|+++..          
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45555666777777777777777766653     21 12221 224466788888999988888887751          


Q ss_pred             C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHHHHhhCC--
Q 039873          401 R-DIITWNAMICGYSHHGLGREALTLFQNMLA-----AEERPNHV--TFVGVLSACGHLGLVQEGFYYLNHLMKQIGI--  470 (709)
Q Consensus       401 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--  470 (709)
                      | -..+++.|...|.+.|++++|..++++..+     .|..+..+  -++.+...|...+.+++|..+++...+.+.-  
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            1 124777788889999999888888777653     23233222  4566677789999999999999988775542  


Q ss_pred             CCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC-------CC--CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc-
Q 039873          471 VPG----LEHYTCIVGLLSKAGLLDEAEKFMRST-------PV--KWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHM-  535 (709)
Q Consensus       471 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~--~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-  535 (709)
                      .++    ..+++.|...|-+.|++++|++++++.       ..  .+. ...++.|..+|.+.++++.|.++|.....+ 
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            222    357899999999999999999998743       11  122 456677888999999999999999886553 


Q ss_pred             ---CCC---CchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873          536 ---DPN---DVGTYILLSNMYAKEKRWDGVSKIRKLMK  567 (709)
Q Consensus       536 ---~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  567 (709)
                         +|+   -..+|..|+-.|...|++++|.++.....
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               444   45678899999999999999999998876

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=4.4e-07  Score=93.07  Aligned_cols=433  Identities=14%  Similarity=0.131  Sum_probs=239.9

Q ss_pred             HHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHH--HHHHHH--hcC
Q 039873          109 YLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNA--LVELYT--KCL  184 (709)
Q Consensus       109 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~~g  184 (709)
                      +.+.+++++|+..-.++. . +.+-|...+..=+-+..+.+.++.|..+.   ...+.   ..+++.  +=.+|+  +.+
T Consensus        22 ~~~~~e~e~a~k~~~Kil-~-~~pdd~~a~~cKvValIq~~ky~~ALk~i---kk~~~---~~~~~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   22 HGKNGEYEEAVKTANKIL-S-IVPDDEDAIRCKVVALIQLDKYEDALKLI---KKNGA---LLVINSFFFEKAYCEYRLN   93 (652)
T ss_pred             hccchHHHHHHHHHHHHH-h-cCCCcHhhHhhhHhhhhhhhHHHHHHHHH---Hhcch---hhhcchhhHHHHHHHHHcc
Confidence            444556666666666654 2 22334444555555555556666555322   12211   011111  123443  677


Q ss_pred             ChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039873          185 DVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWD-SVTYVNAFGLSASLKDLKLGLQVHSQML  263 (709)
Q Consensus       185 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~  263 (709)
                      ..++|...++.....|..+...-...+.+.|++++|+++|+.+.+.+..-- ...-..++.+-...       +. ..+.
T Consensus        94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~-~~~q  165 (652)
T KOG2376|consen   94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV-QLLQ  165 (652)
T ss_pred             cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-HHHH
Confidence            888888888855555554555566778888999999999999877654321 11222222221110       11 0112


Q ss_pred             HcCCCCc--hHHHHHHHHHHHhcCChHHHHHHHHhc--------cCCC-----Hh-----hHHHHHHHHHHcCCHhHHHH
Q 039873          264 KSDIEPD--VFINSAMISMYGKCGKFSNAKKVFEGL--------ETRN-----VV-----LWTAMVAACFQNEYFEEALN  323 (709)
Q Consensus       264 ~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m--------~~~~-----~~-----~~~~li~~~~~~g~~~~A~~  323 (709)
                      .....|+  -..+-.....+...|++.+|+++++..        .+.|     ..     .---|.-.+...|+.++|..
T Consensus       166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~  245 (652)
T KOG2376|consen  166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS  245 (652)
T ss_pred             hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            2222221  112222344567788999998888776        2111     11     11223446678899999999


Q ss_pred             HHHHHHhCCCCCCccchHHHHH---HHhccCChhH--HHHHHH-----------HHHHhCCCCChhHHhHHHhHHHhcCC
Q 039873          324 LFCGMEYEAIRPNEFTFAVMLN---SAAGLSALRH--GDLLHA-----------HIEKSGFKEHLIVGNALINMYAKGGN  387 (709)
Q Consensus       324 ~~~~m~~~g~~pd~~t~~~ll~---~~~~~~~~~~--a~~i~~-----------~~~~~g~~~~~~~~~~li~~y~~~g~  387 (709)
                      ++...++.. .+|........+   +.....++-.  ....++           ......-.....--+.++.+|.  +.
T Consensus       246 iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk  322 (652)
T KOG2376|consen  246 IYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NK  322 (652)
T ss_pred             HHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh
Confidence            999988764 445433222221   2222222111  011111           0010000112222345565554  45


Q ss_pred             HHHHHHHHhhcCCCC-hhhHHHHH-HHHH-HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHHHHHHHH
Q 039873          388 IEAANKVFSDMRYRD-IITWNAMI-CGYS-HHGLGREALTLFQNMLAAEERPNH--VTFVGVLSACGHLGLVQEGFYYLN  462 (709)
Q Consensus       388 ~~~A~~~f~~~~~~~-~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~  462 (709)
                      .+.+.++-...+..- ...+.+++ .++. +...+.+|.+++...-+.  .|+.  +.....+.-....|+++.|.+++.
T Consensus       323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~  400 (652)
T KOG2376|consen  323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILS  400 (652)
T ss_pred             HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            667777777766422 22333333 3332 223577888888877663  4544  344444555678899999999998


Q ss_pred             --------HHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh--------CCCCCC-HHHHHHHHHHHHhcCCchHH
Q 039873          463 --------HLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS--------TPVKWD-VVAWHTLLNASRVHQNYGFG  525 (709)
Q Consensus       463 --------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~pd-~~~~~~ll~~~~~~g~~~~a  525 (709)
                              ...+ .+..|.  +..+++.+|.+.++-+.|..++.+        +.-++. ...|.-+..--.++|+.++|
T Consensus       401 ~~~~~~~ss~~~-~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea  477 (652)
T KOG2376|consen  401 LFLESWKSSILE-AKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA  477 (652)
T ss_pred             HHhhhhhhhhhh-hccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence                    4322 344454  667788999988887666666442        222222 33444444455678999999


Q ss_pred             HHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHH
Q 039873          526 RRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLM  566 (709)
Q Consensus       526 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  566 (709)
                      ..+++++.+.+|++..+.+.++.+|++.. .+.|..+-+.+
T Consensus       478 ~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L  517 (652)
T KOG2376|consen  478 SSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKKL  517 (652)
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence            99999999999999999999999998764 45555554433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=5.5e-07  Score=88.23  Aligned_cols=302  Identities=11%  Similarity=-0.063  Sum_probs=206.9

Q ss_pred             CChhhHHHHHHHHh--cCCCcHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHH--
Q 039873          234 WDSVTYVNAFGLSA--SLKDLKLGLQVHSQMLK-SDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAM--  308 (709)
Q Consensus       234 p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l--  308 (709)
                      |+..+....+.+++  ..++-..+.+.+-.+.+ .-++.|+....++...|...|+.++|+..|++...-|+.+..+|  
T Consensus       192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~  271 (564)
T KOG1174|consen  192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL  271 (564)
T ss_pred             CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence            33334444444433  33444444454444443 34677888999999999999999999999998776555443333  


Q ss_pred             -HHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCC
Q 039873          309 -VAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGN  387 (709)
Q Consensus       309 -i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~  387 (709)
                       .--+.+.|+++....+...+.... +-....|..-+...-..++++.|..+-+..++.+ +.+...+-.-...+...|+
T Consensus       272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R  349 (564)
T KOG1174|consen  272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER  349 (564)
T ss_pred             HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc
Confidence             334567888888888777776431 1122223223333445667777777777777654 3334444444456667899


Q ss_pred             HHHHHHHHhhcC--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhc-cccHHHHHHHHH
Q 039873          388 IEAANKVFSDMR--Y-RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVL-SACGH-LGLVQEGFYYLN  462 (709)
Q Consensus       388 ~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~a~~~-~g~~~~a~~~~~  462 (709)
                      .++|.--|+...  . -+..+|.-|+..|...|+..+|.-+-+..... ++.+..++..+. ..|.. ...-++|..+++
T Consensus       350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e  428 (564)
T KOG1174|consen  350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE  428 (564)
T ss_pred             hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence            999999998765  3 47889999999999999999999887776553 344555555442 33322 233477888887


Q ss_pred             HHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873          463 HLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV  540 (709)
Q Consensus       463 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  540 (709)
                      +.   ..+.|+ ....+.+...+.+.|+.+++..++++. ...||...-+.|...++..+.+.+|.+.|..++.++|++-
T Consensus       429 k~---L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~  505 (564)
T KOG1174|consen  429 KS---LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK  505 (564)
T ss_pred             hh---hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence            75   355676 456677888899999999999998753 4568888889999999999999999999999999999874


Q ss_pred             h
Q 039873          541 G  541 (709)
Q Consensus       541 ~  541 (709)
                      .
T Consensus       506 ~  506 (564)
T KOG1174|consen  506 R  506 (564)
T ss_pred             H
Confidence            3

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.11  E-value=9.7e-07  Score=93.40  Aligned_cols=405  Identities=12%  Similarity=0.042  Sum_probs=257.0

Q ss_pred             CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhh-HH
Q 039873          165 GLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVT-YV  240 (709)
Q Consensus       165 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~  240 (709)
                      .+.-|..+|..|.-+..++|+++.+-+.|++...   .....|+.+-..|.-.|.-..|+.+++.-......|+..+ +.
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            4566888999999999999999999999998654   2445799999999999999999999988766544455444 44


Q ss_pred             HHHHHHh-cCCCcHHHHHHHHHHHHc--CC--CCchHHHHHHHHHHHhcC-----------ChHHHHHHHHhccC-----
Q 039873          241 NAFGLSA-SLKDLKLGLQVHSQMLKS--DI--EPDVFINSAMISMYGKCG-----------KFSNAKKVFEGLET-----  299 (709)
Q Consensus       241 ~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~g-----------~~~~A~~~~~~m~~-----  299 (709)
                      ..-..|. +.+..+++..+-..++..  +.  ......+-.+.-+|...-           ...++...+++..+     
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d  477 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD  477 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4444454 456777777666666652  11  122334444444443221           12345555555533     


Q ss_pred             CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHh-CCCCChhHHhHH
Q 039873          300 RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKS-GFKEHLIVGNAL  378 (709)
Q Consensus       300 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~l  378 (709)
                      +++..|-  .--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++..|..+.+..... |.  |-.....-
T Consensus       478 p~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~  553 (799)
T KOG4162|consen  478 PLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGK  553 (799)
T ss_pred             chHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhh
Confidence            2333332  3346677788999999988887755666777777777778888888888888776642 21  10000011


Q ss_pred             HhHHHhcCCHHHHHHHH-------h-------------------hcC-----CCChh-hHHHHHHHHHHcCChHHHHHHH
Q 039873          379 INMYAKGGNIEAANKVF-------S-------------------DMR-----YRDII-TWNAMICGYSHHGLGREALTLF  426 (709)
Q Consensus       379 i~~y~~~g~~~~A~~~f-------~-------------------~~~-----~~~~~-~~~~li~~~~~~g~~~~A~~~~  426 (709)
                      +..-..-++.++|....       +                   .+.     ..|.. ++.-+ .+... -+.+.+..-.
T Consensus       554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~  631 (799)
T KOG4162|consen  554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSEL  631 (799)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhccccc
Confidence            11111234444443322       2                   111     01111 22221 11111 1111110000


Q ss_pred             HHHHHCCCCC--CH------HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 039873          427 QNMLAAEERP--NH------VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFM  497 (709)
Q Consensus       427 ~~m~~~g~~p--d~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~  497 (709)
                      . |...-+.|  +.      ..|......+...+..++|...+.+..   ++.| ....|.-....+...|.++||.+.|
T Consensus       632 ~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af  707 (799)
T KOG4162|consen  632 K-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAF  707 (799)
T ss_pred             c-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence            0 11111222  21      123445566788888899987777764   3333 3556777778889999999999987


Q ss_pred             H-hCCCCCC-HHHHHHHHHHHHhcCCchHHHH--HHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCcc
Q 039873          498 R-STPVKWD-VVAWHTLLNASRVHQNYGFGRR--IAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKK  573 (709)
Q Consensus       498 ~-~~~~~pd-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  573 (709)
                      . ...+.|| +.+..++...+.+.|+...|..  +...+++++|.++..|..|+.++.+.|+.++|.+.|....+-.- .
T Consensus       708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S  786 (799)
T KOG4162|consen  708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-S  786 (799)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-C
Confidence            6 5567787 7778888889999999888888  99999999999999999999999999999999999999876432 2


Q ss_pred             CCceeEE
Q 039873          574 EPGSSWT  580 (709)
Q Consensus       574 ~~~~s~~  580 (709)
                      .|..+|.
T Consensus       787 ~PV~pFs  793 (799)
T KOG4162|consen  787 NPVLPFS  793 (799)
T ss_pred             CCccccc
Confidence            3434444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.06  E-value=3e-07  Score=90.12  Aligned_cols=290  Identities=11%  Similarity=0.029  Sum_probs=181.5

Q ss_pred             CCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 039873          112 NGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKR  191 (709)
Q Consensus       112 ~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~  191 (709)
                      .|++..|.++..+-. +.+-.| ...|.....+.-..|+.+.+-+++.++-+..-+++..+.-+........|+.+.|+.
T Consensus        97 eG~~~qAEkl~~rna-e~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNA-EHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhh-hcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            477888888777755 444333 334555556666777788887777777776445666666666777777777777766


Q ss_pred             HHhhC---CCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCC
Q 039873          192 LLDLL---PGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIE  268 (709)
Q Consensus       192 ~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~  268 (709)
                      -.++.   ..++..........|.+.|++.+...++.+|.+.|.--|+..                 .++          
T Consensus       175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l----------  227 (400)
T COG3071         175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL----------  227 (400)
T ss_pred             HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH----------
Confidence            66543   335666677777777777777777777777777665433220                 000          


Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHH
Q 039873          269 PDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLN  345 (709)
Q Consensus       269 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~  345 (709)
                       ...+++.+++-....+..+.-...+++.+.   .++..-.+++.-+.+.|+.++|.++..+..+.+..|+    -..+-
T Consensus       228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~  302 (400)
T COG3071         228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLI  302 (400)
T ss_pred             -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHH
Confidence             112344444433333344444445555553   2455555666777777788888887777777666665    12223


Q ss_pred             HHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHHcCChHHHH
Q 039873          346 SAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR--YRDIITWNAMICGYSHHGLGREAL  423 (709)
Q Consensus       346 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~  423 (709)
                      .+.+.++.+.-.+..+.-.+.. +.++..+.+|...|.+.+.+.+|...|+...  .++..+|+-+..+|.+.|+..+|.
T Consensus       303 ~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~  381 (400)
T COG3071         303 PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE  381 (400)
T ss_pred             hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence            3455555555555544444332 3444677778888888888888888888654  467778888888888888888888


Q ss_pred             HHHHHHHHCCCCC
Q 039873          424 TLFQNMLAAEERP  436 (709)
Q Consensus       424 ~~~~~m~~~g~~p  436 (709)
                      +.+++....-.+|
T Consensus       382 ~~r~e~L~~~~~~  394 (400)
T COG3071         382 QVRREALLLTRQP  394 (400)
T ss_pred             HHHHHHHHHhcCC
Confidence            8877765433333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.03  E-value=1.4e-07  Score=99.20  Aligned_cols=234  Identities=13%  Similarity=0.132  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhccC----------CCHh-hHHHHHHHHHHcCCHhHHHHHHHHHHhC---CCCCCc-
Q 039873          273 INSAMISMYGKCGKFSNAKKVFEGLET----------RNVV-LWTAMVAACFQNEYFEEALNLFCGMEYE---AIRPNE-  337 (709)
Q Consensus       273 ~~~~li~~y~~~g~~~~A~~~~~~m~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~-  337 (709)
                      +...|..+|...|+++.|..+|+...+          +.+. ..+.+...|...+++++|..+|+++...   ..-++. 
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            333355555555555555555544321          1111 2233455666666666666666666431   112222 


Q ss_pred             ---cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhh---cCCCChh-hHHHHH
Q 039873          338 ---FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSD---MRYRDII-TWNAMI  410 (709)
Q Consensus       338 ---~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~---~~~~~~~-~~~~li  410 (709)
                         .|+..|-.+|.+.|++++|+...+.+.+.                            +++   ...+.+. ..+.++
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~l~~~~  332 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQLSELA  332 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHHHHHHH
Confidence               23444445566677777666665554431                            111   0011111 223333


Q ss_pred             HHHHHcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHhh----C-CCCC-hHHH
Q 039873          411 CGYSHHGLGREALTLFQNMLAA---EERPNH----VTFVGVLSACGHLGLVQEGFYYLNHLMKQI----G-IVPG-LEHY  477 (709)
Q Consensus       411 ~~~~~~g~~~~A~~~~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~  477 (709)
                      ..+...+++++|..++++..+.   -..++.    .+++.+...+-+.|.+++|.++|+++++..    | ..+. ..++
T Consensus       333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l  412 (508)
T KOG1840|consen  333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL  412 (508)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence            4444445555555544443321   122222    356666666777777777777777665532    1 1111 3456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 039873          478 TCIVGLLSKAGLLDEAEKFMRST--------PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILH  534 (709)
Q Consensus       478 ~~li~~~~~~g~~~~A~~~~~~~--------~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  534 (709)
                      +-|...|.+.+++++|.++|.+.        +-.|+ ..+|..|...|...|+++.|+++.+++..
T Consensus       413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            66777777777777777665432        12355 67888999999999999999999998874

>PRK12370 invasion protein regulator; Provisional

Probab=99.03  E-value=5.3e-08  Score=107.24  Aligned_cols=243  Identities=12%  Similarity=-0.003  Sum_probs=172.1

Q ss_pred             CHhHHHHHHHHHHhCCCCCCcc-chHHHHHHHh---------ccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcC
Q 039873          317 YFEEALNLFCGMEYEAIRPNEF-TFAVMLNSAA---------GLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGG  386 (709)
Q Consensus       317 ~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~---------~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g  386 (709)
                      ..++|+++|++..+.  .|+.. .+..+..++.         ..++.++|...++.+++.+ +.+...+..+...+...|
T Consensus       276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence            356788888887754  45443 2333322222         2345788888888888875 556778888888999999


Q ss_pred             CHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHH
Q 039873          387 NIEAANKVFSDMRY--R-DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLN  462 (709)
Q Consensus       387 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~  462 (709)
                      ++++|...|++..+  | +...|..+...|...|++++|+..+++..+  +.|+.. .+..++..+...|++++|...++
T Consensus       353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            99999999998763  3 456788899999999999999999999998  456543 33334445666899999999999


Q ss_pred             HHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873          463 HLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND  539 (709)
Q Consensus       463 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  539 (709)
                      .+.+.  ..| +...+..+...|...|++++|.+.+++. +..|+ ...++.+...+...|  +.|...++++++..-..
T Consensus       431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~  506 (553)
T PRK12370        431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI  506 (553)
T ss_pred             HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence            87653  234 3445777888999999999999998875 23344 444555666667777  47888788777643222


Q ss_pred             chhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          540 VGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       540 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      +..+..+...|+-.|+-+.+..+ +++.+.
T Consensus       507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             hcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence            22233366778888888877777 777654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=1.6e-06  Score=83.36  Aligned_cols=157  Identities=11%  Similarity=0.044  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHH-HHHHHH
Q 039873          406 WNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYT-CIVGLL  484 (709)
Q Consensus       406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~  484 (709)
                      -.+|.+.+.-..++++.+-++.....- +..|..--..+..|.+..|.+.+|.++|-.+.. -.+ .+..+|. .|...|
T Consensus       362 RQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~i-kn~~~Y~s~LArCy  438 (557)
T KOG3785|consen  362 RQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEI-KNKILYKSMLARCY  438 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhh-hhhHHHHHHHHHHH
Confidence            344555555555667777666666554 233333333466788888999999998876522 122 3444554 456788


Q ss_pred             HhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHH
Q 039873          485 SKAGLLDEAEKFMRSTPVKWDVVAWHTLL-NASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIR  563 (709)
Q Consensus       485 ~~~g~~~~A~~~~~~~~~~pd~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~  563 (709)
                      .++|.++-|+++|-++....+..+.-.+| .-|.+.+.+--|-++|..+..++|. +..|         .|+-.-...+|
T Consensus       439 i~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW---------eGKRGACaG~f  508 (557)
T KOG3785|consen  439 IRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENW---------EGKRGACAGLF  508 (557)
T ss_pred             HhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc---------CCccchHHHHH
Confidence            99999999999988876444555554444 4788888888888999998888874 2222         34445555666


Q ss_pred             HHHHhCCCccCC
Q 039873          564 KLMKVRKVKKEP  575 (709)
Q Consensus       564 ~~m~~~~~~~~~  575 (709)
                      ..+..+.-++.|
T Consensus       509 ~~l~~~~~~~~p  520 (557)
T KOG3785|consen  509 RQLANHKTDPIP  520 (557)
T ss_pred             HHHHcCCCCCCc
Confidence            666554444444

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=6.9e-06  Score=88.99  Aligned_cols=465  Identities=14%  Similarity=0.137  Sum_probs=270.1

Q ss_pred             HHHHHHHHHccCChHHHHHHHhcCCC--CCcchHHHH-----HHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 039873           71 TNSLVNLYAKCNQISIARQLFDNMRQ--RNVVSYSSL-----MTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLS  143 (709)
Q Consensus        71 ~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~  143 (709)
                      +..+.+.+.|.|-...|++.|..+..  |.++ .+.+     +..|.-.-.++++++.++.|. ..+++.|..+...+..
T Consensus       609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml-~~NirqNlQi~VQvat  686 (1666)
T KOG0985|consen  609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAML-SANIRQNLQIVVQVAT  686 (1666)
T ss_pred             HHHHHHHHHhcchHHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhhhHHHHHHHH
Confidence            45566777888888888888877653  2222 1221     234555557888899999998 7777777766655555


Q ss_pred             HHhcCCCchHHHHHHHHHHH-----------hCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--------------
Q 039873          144 SCSRSGRGAEGRQCHGYVFK-----------SGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG--------------  198 (709)
Q Consensus       144 ~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------------  198 (709)
                      -|...--.+...++|+....           ..+..|+.+.-..|.+-++.|++.+.+++.++-..              
T Consensus       687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk  766 (1666)
T KOG0985|consen  687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK  766 (1666)
T ss_pred             HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence            55443333333444443322           12456777778889999999999998888765321              


Q ss_pred             -----------------CCcccH------HHHHHHHHhCCCccHHHHHHHHHHhCCCCCC-----------hhhHHHHHH
Q 039873          199 -----------------YDVFEY------NSVLNGLIENECFRGGVEVLGKMVSGSVRWD-----------SVTYVNAFG  244 (709)
Q Consensus       199 -----------------~~~~~~------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----------~~t~~~ll~  244 (709)
                                       +|.+.|      --.|..|++.=++...-.+...++.....-|           .+...-+..
T Consensus       767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~  846 (1666)
T KOG0985|consen  767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE  846 (1666)
T ss_pred             ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence                             011111      1234555555444443333333332111100           011122333


Q ss_pred             HHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChH------------------------------------
Q 039873          245 LSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFS------------------------------------  288 (709)
Q Consensus       245 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~------------------------------------  288 (709)
                      -+-+.+++..-...++..+..| ..|..++|+|...|...++-.                                    
T Consensus       847 EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc  925 (1666)
T KOG0985|consen  847 EVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC  925 (1666)
T ss_pred             HHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence            4445556666666777777777 557778888877665433211                                    


Q ss_pred             ----------------HHHHHHHhcc-----------------------------CCCHhhHHHHHHHHHHcCCHhHHHH
Q 039873          289 ----------------NAKKVFEGLE-----------------------------TRNVVLWTAMVAACFQNEYFEEALN  323 (709)
Q Consensus       289 ----------------~A~~~~~~m~-----------------------------~~~~~~~~~li~~~~~~g~~~~A~~  323 (709)
                                      .|+-+.+++.                             ..|+..-+.-+.++...+-+.+-++
T Consensus       926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen  926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred             cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence                            1111111110                             0123333444566667777777778


Q ss_pred             HHHHHHhCCCCCCc-cch-HHHHHHHhccCChhHHHHHHHHHHHhC-----------------------CCCChhHHhHH
Q 039873          324 LFCGMEYEAIRPNE-FTF-AVMLNSAAGLSALRHGDLLHAHIEKSG-----------------------FKEHLIVGNAL  378 (709)
Q Consensus       324 ~~~~m~~~g~~pd~-~t~-~~ll~~~~~~~~~~~a~~i~~~~~~~g-----------------------~~~~~~~~~~l  378 (709)
                      +++++.-..-..+. ... +.++-...+ .+.....++.+.+-..+                       +..+....+.|
T Consensus      1006 LLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VL 1084 (1666)
T KOG0985|consen 1006 LLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVL 1084 (1666)
T ss_pred             HHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHH
Confidence            88777632211110 111 111111111 11111111111111111                       11122222222


Q ss_pred             HhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH
Q 039873          379 INMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGF  458 (709)
Q Consensus       379 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~  458 (709)
                      |+   ..+.++.|.+.-++..  ....|..+..+-.+.|...+|++-|-+.      -|...|.-++.++++.|.+++-.
T Consensus      1085 ie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1085 IE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred             HH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHH
Confidence            21   2234444444444433  3357999999999999999999887542      35678999999999999999999


Q ss_pred             HHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 039873          459 YYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN  538 (709)
Q Consensus       459 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  538 (709)
                      .++....+ ..-+|.+  -+.||-+|++.+++.|-++++.    -||..-......-|...|.++-|+-++..       
T Consensus      1154 ~yL~MaRk-k~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------- 1219 (1666)
T KOG0985|consen 1154 KYLLMARK-KVREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN------- 1219 (1666)
T ss_pred             HHHHHHHH-hhcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH-------
Confidence            99887655 4667764  4679999999999999988874    36777778888889999999998888765       


Q ss_pred             CchhHHHHHHHhhhcCCchhHHHHHHH
Q 039873          539 DVGTYILLSNMYAKEKRWDGVSKIRKL  565 (709)
Q Consensus       539 ~~~~~~~l~~~~~~~g~~~~a~~~~~~  565 (709)
                       .+.|..|+..+...|.+.-|...-++
T Consensus      1220 -vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1220 -VSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence             34567777777777777766654443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.97  E-value=1.7e-07  Score=91.11  Aligned_cols=198  Identities=10%  Similarity=0.045  Sum_probs=102.3

Q ss_pred             HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHh
Q 039873          302 VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN-EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALIN  380 (709)
Q Consensus       302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~  380 (709)
                      ...+..+...|...|++++|.+.|++..+..  |+ ...+..+...+...|+++.|...+....+.. +.+..       
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~-------  100 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGD-------  100 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH-------
Confidence            4567777888888888888888888876542  32 2334444444555555555555555554433 22233       


Q ss_pred             HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHH
Q 039873          381 MYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFY  459 (709)
Q Consensus       381 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~  459 (709)
                                              .+..+...+...|++++|.+.|++.......| +...+..+...+...|++++|..
T Consensus       101 ------------------------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  156 (234)
T TIGR02521       101 ------------------------VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK  156 (234)
T ss_pred             ------------------------HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence                                    34444444455555555555555554422111 12233344444555555555555


Q ss_pred             HHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 039873          460 YLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PV-KWDVVAWHTLLNASRVHQNYGFGRRIAEYILHM  535 (709)
Q Consensus       460 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  535 (709)
                      .+....+.  .+.+...+..+...+...|++++|.+.+++. .. ..+...+..+...+...|+.+.|....+.+.+.
T Consensus       157 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       157 YLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            55554432  1112334555555555566666665555432 11 123444444555555566666666665555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.93  E-value=1e-07  Score=95.93  Aligned_cols=189  Identities=14%  Similarity=0.035  Sum_probs=113.4

Q ss_pred             hHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 039873          373 IVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSAC  448 (709)
Q Consensus       373 ~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~  448 (709)
                      ..+..+...|.+.|+.++|...|++..+   .+...|+.+...|...|++++|++.|++..+  +.|+ ..++..+..++
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l  142 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIAL  142 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence            3455566667777777777777776542   3456777777777777777777777777776  4554 44666666667


Q ss_pred             hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchHHH
Q 039873          449 GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-P-VKWDVVAWHTLLNASRVHQNYGFGR  526 (709)
Q Consensus       449 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~pd~~~~~~ll~~~~~~g~~~~a~  526 (709)
                      ...|++++|.+.|+...+.   .|+..........+...++.++|.+.+++. . ..|+  .|.. .......|+...+ 
T Consensus       143 ~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~~-~~~~~~lg~~~~~-  215 (296)
T PRK11189        143 YYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE--QWGW-NIVEFYLGKISEE-  215 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc--ccHH-HHHHHHccCCCHH-
Confidence            7777777777777776543   343221122222334556777777777532 1 1222  2321 1122234554443 


Q ss_pred             HHHHHHH-------hcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873          527 RIAEYIL-------HMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK  570 (709)
Q Consensus       527 ~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  570 (709)
                      +.++.+.       ++.|..+.+|..++.+|.+.|++++|...|++..+.+
T Consensus       216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            2333333       3345556678888888888888888888888776543

>PRK12370 invasion protein regulator; Provisional

Probab=98.92  E-value=1.5e-07  Score=103.60  Aligned_cols=209  Identities=11%  Similarity=-0.026  Sum_probs=160.6

Q ss_pred             ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHH---------hcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCCh
Q 039873          352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYA---------KGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLG  419 (709)
Q Consensus       352 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~---------~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~  419 (709)
                      ++++|.+.++.+++.. +.+...+..+..+|.         ..+++++|...+++..+   .+...|..+...+...|++
T Consensus       276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence            4578889999888764 334555666655544         23458899999998764   3667888888899999999


Q ss_pred             HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 039873          420 REALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL-EHYTCIVGLLSKAGLLDEAEKFM  497 (709)
Q Consensus       420 ~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~  497 (709)
                      ++|+..|++..+  ..|+ ...+..+..++...|++++|...++.+.+.   .|+. ..+..+...+...|++++|.+.+
T Consensus       355 ~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        355 IVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence            999999999998  4565 457777888899999999999999998654   4442 22333445577789999999998


Q ss_pred             HhCC--CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          498 RSTP--VKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       498 ~~~~--~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ++.-  ..|+ +..+..+...+...|+.++|...++++....|.+......+...|...|  ++|...++.+.+
T Consensus       430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            7652  1354 5556777778889999999999999998888887777778888888888  588887877765

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.91  E-value=8.8e-06  Score=86.40  Aligned_cols=437  Identities=14%  Similarity=0.054  Sum_probs=263.0

Q ss_pred             CchhHHHHHHHHHHccCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCC-ChhhHHHH
Q 039873           66 ENVVLTNSLVNLYAKCNQISIARQLFDNMRQ---RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEP-NEYIFSIV  141 (709)
Q Consensus        66 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~l  141 (709)
                      .++.+|..|.-++..+|+++.+-+.|++...   .....|+.+-..|...|....|+.+++.-. ...-.| |...+-..
T Consensus       321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~-~~~~~ps~~s~~Lma  399 (799)
T KOG4162|consen  321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESL-KKSEQPSDISVLLMA  399 (799)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhc-ccccCCCcchHHHHH
Confidence            5788999999999999999999999987653   345579999889999999889999988765 222224 44444444


Q ss_pred             HHHHh-cCCCchHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCC
Q 039873          142 LSSCS-RSGRGAEGRQCHGYVFKSG--L--VFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENEC  216 (709)
Q Consensus       142 l~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~  216 (709)
                      -+.|. +.+..++|..+-..++...  .  ......+-.+--+|+..              .....+|.-      +...
T Consensus       400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~--------------A~~a~~~se------R~~~  459 (799)
T KOG4162|consen  400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQ--------------ARQANLKSE------RDAL  459 (799)
T ss_pred             HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhH--------------hhcCCChHH------HHHH
Confidence            45554 4466777766666665521  0  01111122222222110              011111111      1112


Q ss_pred             ccHHHHHHHHHHhC-CCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 039873          217 FRGGVEVLGKMVSG-SVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFE  295 (709)
Q Consensus       217 ~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~  295 (709)
                      ..++++.+++.++. +-.|+..-|.++-  ++..++++.|.+...+.++.+-..+...|..|.-.+.-.+++.+|+.+.+
T Consensus       460 h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd  537 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD  537 (799)
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            35677777777653 3345444444443  55677888898888888888667788888888888888888999988887


Q ss_pred             hccCC---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhC--CCCCCccchHHHHHHHhccCChhHHHHHHHHHH--HhCC
Q 039873          296 GLETR---NVVLWTAMVAACFQNEYFEEALNLFCGMEYE--AIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIE--KSGF  368 (709)
Q Consensus       296 ~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~--~~g~  368 (709)
                      ...+.   |.+....-|..-..-++.++|+.....+...  ...+-..+..        .|..   .+....+.  ....
T Consensus       538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~---~~lk~~l~la~~q~  606 (799)
T KOG4162|consen  538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD--------EGKL---LRLKAGLHLALSQP  606 (799)
T ss_pred             HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhh---hhhhcccccCcccc
Confidence            75532   2221112222233356777777766666431  0000000000        0000   00100000  0000


Q ss_pred             CCChhHHhHHHhHHH---hcCCHHHHHHHHhhcCCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H
Q 039873          369 KEHLIVGNALINMYA---KGGNIEAANKVFSDMRYRD------IITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-H  438 (709)
Q Consensus       369 ~~~~~~~~~li~~y~---~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~  438 (709)
                      .....++..+.....   +.-..+..+..+...+.|+      ...|......+.+.+..++|...+.+...  +.|- .
T Consensus       607 ~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~  684 (799)
T KOG4162|consen  607 TDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSA  684 (799)
T ss_pred             cccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhH
Confidence            111122222211111   1111111222222222333      23566777888889999999988888876  4443 3


Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHH--HHH-hCCCCCC-HHHHHHHH
Q 039873          439 VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEK--FMR-STPVKWD-VVAWHTLL  513 (709)
Q Consensus       439 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~-~~~~~pd-~~~~~~ll  513 (709)
                      ..|......+...|..++|.+.|...   .-+.|+ +....++..++.+.|+..-|..  ++. ...+.|+ ...|-.|.
T Consensus       685 ~~~~~~G~~~~~~~~~~EA~~af~~A---l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG  761 (799)
T KOG4162|consen  685 SVYYLRGLLLEVKGQLEEAKEAFLVA---LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG  761 (799)
T ss_pred             HHHHHhhHHHHHHHhhHHHHHHHHHH---HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            45555555667788999999999876   356665 5678899999999998777766  654 3455564 88999999


Q ss_pred             HHHHhcCCchHHHHHHHHHHhcCCCCch
Q 039873          514 NASRVHQNYGFGRRIAEYILHMDPNDVG  541 (709)
Q Consensus       514 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~  541 (709)
                      ..+.+.|+.+.|-+.|..+.++++.+|.
T Consensus       762 ~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  762 EVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            9999999999999999999999876653

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=1.8e-06  Score=86.70  Aligned_cols=338  Identities=13%  Similarity=0.018  Sum_probs=203.8

Q ss_pred             HHHHHHhCCCccHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhc
Q 039873          207 VLNGLIENECFRGGVEVLGKMVSGSVRWD-SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPD-VFINSAMISMYGKC  284 (709)
Q Consensus       207 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~  284 (709)
                      .-+-|.++|.+++|++.|.+..+  ..|| ++.|...-.+|...|+++++.+--...++.  .|+ +..+..-..++-+.
T Consensus       121 ~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l  196 (606)
T KOG0547|consen  121 KGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL  196 (606)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence            34567788888888888888876  4677 666777777778888888887777666654  333 44555566677777


Q ss_pred             CChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHH--------HHHHh-C--CCCCCccchHHHHHHHhccCCh
Q 039873          285 GKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLF--------CGMEY-E--AIRPNEFTFAVMLNSAAGLSAL  353 (709)
Q Consensus       285 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~m~~-~--g~~pd~~t~~~ll~~~~~~~~~  353 (709)
                      |++++|..=         +|-..+..+|..+.-.--+.+++        ++-.. .  .+-|......+....+...-..
T Consensus       197 g~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~  267 (606)
T KOG0547|consen  197 GKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP  267 (606)
T ss_pred             ccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence            777776532         12222223322222222222222        22122 1  1234433333333332110000


Q ss_pred             hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhc-CCHHHHHHHHhhc-------CCCC---------hhhHHHHHHHHHHc
Q 039873          354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKG-GNIEAANKVFSDM-------RYRD---------IITWNAMICGYSHH  416 (709)
Q Consensus       354 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~f~~~-------~~~~---------~~~~~~li~~~~~~  416 (709)
                              .+...+-+.|...-..+=..|... ..+..|...+.+-       ...+         ..+.+.-..-+.-.
T Consensus       268 --------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~  339 (606)
T KOG0547|consen  268 --------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK  339 (606)
T ss_pred             --------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence                    000000001111111111111110 1222333222211       1111         11222222234556


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 039873          417 GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF  496 (709)
Q Consensus       417 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  496 (709)
                      |+.-.|.+-|+..+.....++.. |.-+..+|....+.++.+..|+...+-..-  +..+|-.-..++.-.+++++|..=
T Consensus       340 g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--n~dvYyHRgQm~flL~q~e~A~aD  416 (606)
T KOG0547|consen  340 GDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE--NPDVYYHRGQMRFLLQQYEEAIAD  416 (606)
T ss_pred             CCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC--CCchhHhHHHHHHHHHHHHHHHHH
Confidence            88899999999998854333332 777777889999999999999988653233  345777777888888999999999


Q ss_pred             HHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          497 MRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       497 ~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      |++. .+.|+ ...+-.+.-+..+.+.+++++..|+...+.-|.-+..|+..+.++..++++++|.+.++...+
T Consensus       417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~  490 (606)
T KOG0547|consen  417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE  490 (606)
T ss_pred             HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence            8854 45565 566666666666777999999999999999999999999999999999999999999998876

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.90  E-value=1.6e-05  Score=83.34  Aligned_cols=460  Identities=13%  Similarity=0.097  Sum_probs=235.2

Q ss_pred             CCCCchhHHHHHHHHHHh-------cCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCC
Q 039873           42 DSKDLKLGKVIHAHLIIT-------TESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGF  114 (709)
Q Consensus        42 ~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~  114 (709)
                      ..|++..++.+|+...-.       |-+  ..+.+-..+++.++.  .++.+|..+|-+-.  +   -..-|..|....+
T Consensus       502 ai~dvak~r~lhd~~eiadeas~~~ggd--gt~fykvra~lail~--kkfk~ae~ifleqn--~---te~aigmy~~lhk  572 (1636)
T KOG3616|consen  502 AIGDVAKARFLHDILEIADEASIEIGGD--GTDFYKVRAMLAILE--KKFKEAEMIFLEQN--A---TEEAIGMYQELHK  572 (1636)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhCCC--CchHHHHHHHHHHHH--hhhhHHHHHHHhcc--c---HHHHHHHHHHHHh
Confidence            345555666666543211       111  023333344444444  35777877775421  1   2234566666677


Q ss_pred             hhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 039873          115 LLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLD  194 (709)
Q Consensus       115 ~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~  194 (709)
                      +++|+.+-+..    |.+.-...-.+.+.++...|+-+.|-++         ..+.--..+-|..|.+.|....|.+...
T Consensus       573 wde~i~lae~~----~~p~~eklk~sy~q~l~dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~  639 (1636)
T KOG3616|consen  573 WDEAIALAEAK----GHPALEKLKRSYLQALMDTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAAL  639 (1636)
T ss_pred             HHHHHHHHHhc----CChHHHHHHHHHHHHHHhcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhc
Confidence            88888775532    2222222234445566666665555432         1122223456889999999888877653


Q ss_pred             h--CCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchH
Q 039873          195 L--LPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVF  272 (709)
Q Consensus       195 ~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~  272 (709)
                      .  ....|......+..++++..-+++|=++|+++..         +...+..+.+-..+.+|.++-+..    ++..++
T Consensus       640 n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv  706 (1636)
T KOG3616|consen  640 NDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVV  706 (1636)
T ss_pred             CHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHh
Confidence            2  2224555566666777777777777777777643         222333333333334444333221    111111


Q ss_pred             HH-HHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccC
Q 039873          273 IN-SAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLS  351 (709)
Q Consensus       273 ~~-~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~  351 (709)
                      .. ..-..-+...|+++.|..-|-+...     .---|.+-.....|.+|+.+++.++...  .-..-|..+...|++.|
T Consensus       707 ~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~  779 (1636)
T KOG3616|consen  707 KLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKG  779 (1636)
T ss_pred             hHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccch
Confidence            10 1111222334444555444433210     0112333344555666666665555432  12233445555566666


Q ss_pred             ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCC-----------
Q 039873          352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYR--DIITWNAMICGYSHHGL-----------  418 (709)
Q Consensus       352 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~-----------  418 (709)
                      +++.|+++|...         ..++--|+||.+.|++++|.++-.+...|  ...+|-+-..-+-.+|+           
T Consensus       780 dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti  850 (1636)
T KOG3616|consen  780 DFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITI  850 (1636)
T ss_pred             hHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence            666665555332         12334455666666666666655554433  22333333333444444           


Q ss_pred             ---------------hHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHH
Q 039873          419 ---------------GREALTLFQNMLAAEERPN--HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIV  481 (709)
Q Consensus       419 ---------------~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li  481 (709)
                                     .+..+++.++     ..||  ..|-..+..-+-..|++..|...|-+.-          -|.+-+
T Consensus       851 ~~p~~aiqmydk~~~~ddmirlv~k-----~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaav  915 (1636)
T KOG3616|consen  851 GEPDKAIQMYDKHGLDDDMIRLVEK-----HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAV  915 (1636)
T ss_pred             cCchHHHHHHHhhCcchHHHHHHHH-----hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHH
Confidence                           4444333332     2233  2355555666667788888877765542          367888


Q ss_pred             HHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHH------HHHHhcCCchHHHH-------------HHHHHHhcCCC
Q 039873          482 GLLSKAGLLDEAEKFMRSTPVK----WDVVAWHTLL------NASRVHQNYGFGRR-------------IAEYILHMDPN  538 (709)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~~~~~----pd~~~~~~ll------~~~~~~g~~~~a~~-------------~~~~~~~~~p~  538 (709)
                      ++|-.++.|++|.++-+.-+-.    .-...|.--|      ..+.+||-++.|..             +.+-..+-.  
T Consensus       916 nmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--  993 (1636)
T KOG3616|consen  916 NMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--  993 (1636)
T ss_pred             HHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--
Confidence            9999999999999987654321    1133443222      12334554444443             333222222  


Q ss_pred             CchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          539 DVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       539 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      -+....-+..-+...|++++|-+-+-+..+.
T Consensus       994 ~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen  994 MGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred             CccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence            2345667777888999999998877666543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.89  E-value=6.8e-08  Score=91.55  Aligned_cols=230  Identities=12%  Similarity=0.078  Sum_probs=159.6

Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhc
Q 039873          306 TAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKG  385 (709)
Q Consensus       306 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~  385 (709)
                      +-|..+|.+.|.+.+|.+.|+.-...  .|-..||..+-.+|.+....+.|..++.+-++. ++.++.....+...+-..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence            45666777777777777777666654  344445555666666666666666666655543 233444444555566666


Q ss_pred             CCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 039873          386 GNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLN  462 (709)
Q Consensus       386 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~  462 (709)
                      ++.++|.++|+...+   .|+.+...+..+|.-.++++-|+.+|+++.+.|+. +...|..+.-.|.-.+.+|-++.-|+
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            777788887776653   35556666677788888888888888888888743 45566677767777777777766666


Q ss_pred             HHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchh
Q 039873          463 HLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGT  542 (709)
Q Consensus       463 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  542 (709)
                      ..... .-.|+                  +            -..+|-.|......-||+..|.+.|+-.+..+|++...
T Consensus       383 RAlst-at~~~------------------~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea  431 (478)
T KOG1129|consen  383 RALST-ATQPG------------------Q------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA  431 (478)
T ss_pred             HHHhh-ccCcc------------------h------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence            55331 11111                  1            14556666666667799999999999999999999999


Q ss_pred             HHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873          543 YILLSNMYAKEKRWDGVSKIRKLMKVRK  570 (709)
Q Consensus       543 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~  570 (709)
                      ++.|+-.-.+.|++++|+.+++...+..
T Consensus       432 lnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  432 LNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             HHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            9999999999999999999999887643

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=2.9e-05  Score=80.13  Aligned_cols=443  Identities=14%  Similarity=0.097  Sum_probs=258.7

Q ss_pred             HHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHH--HHHHH-
Q 039873           34 LKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSL--MTWYL-  110 (709)
Q Consensus        34 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l--i~~~~-  110 (709)
                      .+=++.....+.+++|.+....++..+..    +....-.=+-++.+.+++++|.++.+.-..-  .+++..  =.+|| 
T Consensus        16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pd----d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~   89 (652)
T KOG2376|consen   16 LTDLNRHGKNGEYEEAVKTANKILSIVPD----DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCE   89 (652)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHhcCCC----cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHH
Confidence            33455566788999999999999987754    5666666666788899999999776654421  222222  44554 


Q ss_pred             -hCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChHH
Q 039873          111 -HNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLV-FCKYVRNALVELYTKCLDVEM  188 (709)
Q Consensus       111 -~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~  188 (709)
                       +.+..++|+..+....     +.|..+...-...|.+.+++++|..++..+.+.+.+ .|...-..++.+-.    .-.
T Consensus        90 Yrlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~  160 (652)
T KOG2376|consen   90 YRLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQ  160 (652)
T ss_pred             HHcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhh
Confidence             6789999999988443     123446666667788999999999999999988742 22222222322211    111


Q ss_pred             HHHHHhhCCCCCcccHHHH---HHHHHhCCCccHHHHHHHHHHhCC-------------CCCChhh-HHHHHHHHhcCCC
Q 039873          189 AKRLLDLLPGYDVFEYNSV---LNGLIENECFRGGVEVLGKMVSGS-------------VRWDSVT-YVNAFGLSASLKD  251 (709)
Q Consensus       189 A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~t-~~~ll~~~~~~~~  251 (709)
                      +. +.+..+.....+|..+   .-.++..|++.+|+++++...+.+             +.-+..+ -..+.-.+-..|+
T Consensus       161 ~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq  239 (652)
T KOG2376|consen  161 VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ  239 (652)
T ss_pred             HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            11 3555555444455444   345677999999999999883211             1111111 1223334567899


Q ss_pred             cHHHHHHHHHHHHcCCCCch----HHHHHHHHHHHhcCChH-HHHHHHHhccCCCHhh--------------H-HHHHHH
Q 039873          252 LKLGLQVHSQMLKSDIEPDV----FINSAMISMYGKCGKFS-NAKKVFEGLETRNVVL--------------W-TAMVAA  311 (709)
Q Consensus       252 ~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~-~A~~~~~~m~~~~~~~--------------~-~~li~~  311 (709)
                      .++|.+++...++.. .+|.    ...|.|+.+-....-++ .++..|+.........              . +.++..
T Consensus       240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l  318 (652)
T KOG2376|consen  240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL  318 (652)
T ss_pred             hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999887 3343    23344443322111111 3344444433222111              1 222222


Q ss_pred             HHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccC--ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHH
Q 039873          312 CFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLS--ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIE  389 (709)
Q Consensus       312 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~  389 (709)
                      |.  +..+.+.++-....  +..|. +.+.+++..+....  ....+..++....+..-.-...+.-.++......|+++
T Consensus       319 ~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~  393 (652)
T KOG2376|consen  319 FT--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE  393 (652)
T ss_pred             Hh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence            22  22233333322221  12222 34455555543322  34455555555544432333556667778888889999


Q ss_pred             HHHHHHh--------hcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHH----Hhcccc
Q 039873          390 AANKVFS--------DMRY--RDIITWNAMICGYSHHGLGREALTLFQNMLAA--EERPNHVTFVGVLSA----CGHLGL  453 (709)
Q Consensus       390 ~A~~~f~--------~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~ll~a----~~~~g~  453 (709)
                      .|.+++.        .+.+  .-+.+-.++...|.+.++.+.|..++.+....  .-.+......+++.-    -.+.|.
T Consensus       394 ~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~  473 (652)
T KOG2376|consen  394 VALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN  473 (652)
T ss_pred             HHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence            9988888        4432  23344455666677777766677776665431  123333444444332    345688


Q ss_pred             HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 039873          454 VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP  501 (709)
Q Consensus       454 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~  501 (709)
                      -++|...++++.+  -..+|..+...+|.+|++. +.+.|..+-+.++
T Consensus       474 ~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~  518 (652)
T KOG2376|consen  474 EEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP  518 (652)
T ss_pred             hHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence            8999999998876  3467788888899888875 5777887766664

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.86  E-value=2.7e-07  Score=83.85  Aligned_cols=162  Identities=12%  Similarity=0.065  Sum_probs=132.6

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHH
Q 039873          405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNH-VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVG  482 (709)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~  482 (709)
                      +...|..+|.+.|++..|..-+++.++  +.|+. .++..+...|.+.|..+.|.+.|+..++   +.|+ -.+.|....
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~  111 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence            345567788888888888888888888  45654 4788888888888888888888888764   3443 457788888


Q ss_pred             HHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchh
Q 039873          483 LLSKAGLLDEAEKFMRSTPVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDG  558 (709)
Q Consensus       483 ~~~~~g~~~~A~~~~~~~~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  558 (709)
                      -++..|++++|...|+..-..|+    ..+|..+.....+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++..
T Consensus       112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence            88888999999988886543444    66788888777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 039873          559 VSKIRKLMKVRKV  571 (709)
Q Consensus       559 a~~~~~~m~~~~~  571 (709)
                      |...++....++.
T Consensus       192 Ar~~~~~~~~~~~  204 (250)
T COG3063         192 ARLYLERYQQRGG  204 (250)
T ss_pred             HHHHHHHHHhccc
Confidence            9999998877654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=3e-06  Score=81.44  Aligned_cols=189  Identities=13%  Similarity=0.070  Sum_probs=119.1

Q ss_pred             HHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 039873          377 ALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGL-------GREALTLFQNMLAAEERPNHV-TFVGVLSAC  448 (709)
Q Consensus       377 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~  448 (709)
                      .|+-.|.+.+++++|..+.+++....+.-|-.-...++..|+       ..-|.+.|+-.-+++..-|.+ --.++.+++
T Consensus       290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f  369 (557)
T KOG3785|consen  290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF  369 (557)
T ss_pred             hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence            455578889999999999888765444333322223333332       344555555444444444433 123344444


Q ss_pred             hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHH-HhcCCchHH
Q 039873          449 GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPV-K-WDVVAWHTLLNAS-RVHQNYGFG  525 (709)
Q Consensus       449 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-pd~~~~~~ll~~~-~~~g~~~~a  525 (709)
                      --.-.+++.+.++..+.. +=...|...+ .+..+++..|++.+|+++|-...- + .|..+|.+++.-| .+.+..+.|
T Consensus       370 FL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA  447 (557)
T KOG3785|consen  370 FLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA  447 (557)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence            555678888888887643 4445555554 478889999999999999765421 1 3677888777655 556677776


Q ss_pred             HHHHHHHHhcC-CCCc-hhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873          526 RRIAEYILHMD-PNDV-GTYILLSNMYAKEKRWDGVSKIRKLMKVRK  570 (709)
Q Consensus       526 ~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  570 (709)
                      -.   .+++.+ |.+. +....+++-|.+++.+=-|.+.|+.+...+
T Consensus       448 W~---~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD  491 (557)
T KOG3785|consen  448 WD---MMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD  491 (557)
T ss_pred             HH---HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence            54   455555 3332 234466788999999999999998887543

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.84  E-value=8.8e-07  Score=89.27  Aligned_cols=216  Identities=11%  Similarity=-0.078  Sum_probs=137.9

Q ss_pred             CHhHHHHHHHHHHhCC-CCCCc--cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHH
Q 039873          317 YFEEALNLFCGMEYEA-IRPNE--FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANK  393 (709)
Q Consensus       317 ~~~~A~~~~~~m~~~g-~~pd~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~  393 (709)
                      ..+.++.-+.+++... ..|+.  ..|......+...|+.+.|...+..+++.. +.+...++.+...|...|++++|..
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4455555555555321 12211  224444445556666666666666666654 4456778888888889999999999


Q ss_pred             HHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCC
Q 039873          394 VFSDMRY--R-DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGI  470 (709)
Q Consensus       394 ~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~  470 (709)
                      .|++..+  | +..+|..+...+...|++++|++.|++..+  ..|+..........+...++.++|...|.....  ..
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~  195 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL  195 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence            8888753  3 456788888888899999999999999888  456543222222223456789999999976543  23


Q ss_pred             CCChHHHHHHHHHHHhcCCHHH--HHHHHHh-CCC----CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873          471 VPGLEHYTCIVGLLSKAGLLDE--AEKFMRS-TPV----KW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV  540 (709)
Q Consensus       471 ~p~~~~~~~li~~~~~~g~~~~--A~~~~~~-~~~----~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  540 (709)
                      .|+...+ .++..+  .|++.+  +.+.+.+ ...    .| ....|..+...+...|++++|+..|+++++.+|++.
T Consensus       196 ~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~  270 (296)
T PRK11189        196 DKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF  270 (296)
T ss_pred             CccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence            3443222 333333  454433  3333321 111    12 245788899999999999999999999999997553

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.81  E-value=3.4e-05  Score=81.00  Aligned_cols=217  Identities=16%  Similarity=0.203  Sum_probs=145.5

Q ss_pred             HHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHH
Q 039873          311 ACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEA  390 (709)
Q Consensus       311 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~  390 (709)
                      .+.+.|+++.|+.-|-+..         .....+.+......+.+|..|++.+....  .-..-|..+.+-|+..|+++.
T Consensus       715 hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~  783 (1636)
T KOG3616|consen  715 HLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEI  783 (1636)
T ss_pred             HHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHH
Confidence            3444555555555543322         12234455566677888888888777653  223446677888999999999


Q ss_pred             HHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCC
Q 039873          391 ANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGI  470 (709)
Q Consensus       391 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~  470 (709)
                      |.++|.+..     .++--|..|.+.|++++|.++-.+..  |.......|..-..-.-..|.+.+|.+++-.+    | 
T Consensus       784 ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti----~-  851 (1636)
T KOG3616|consen  784 AEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI----G-  851 (1636)
T ss_pred             HHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc----c-
Confidence            999997654     45667888999999999988876542  22333445555555567778888887776442    2 


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHH
Q 039873          471 VPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWD--VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSN  548 (709)
Q Consensus       471 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  548 (709)
                      .|+     .-|.+|-+.|..++.+++..+-.  ||  ..+-.-+..-+...|++..|+.-|-++        .-|-.-++
T Consensus       852 ~p~-----~aiqmydk~~~~ddmirlv~k~h--~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavn  916 (1636)
T KOG3616|consen  852 EPD-----KAIQMYDKHGLDDDMIRLVEKHH--GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVN  916 (1636)
T ss_pred             Cch-----HHHHHHHhhCcchHHHHHHHHhC--hhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHH
Confidence            344     34778888898888888887653  44  345555666677788888887665443        34667788


Q ss_pred             HhhhcCCchhHHHHHHH
Q 039873          549 MYAKEKRWDGVSKIRKL  565 (709)
Q Consensus       549 ~~~~~g~~~~a~~~~~~  565 (709)
                      +|-..+.|++|.++-+.
T Consensus       917 myk~s~lw~dayriakt  933 (1636)
T KOG3616|consen  917 MYKASELWEDAYRIAKT  933 (1636)
T ss_pred             HhhhhhhHHHHHHHHhc
Confidence            89999999998887654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.79  E-value=0.00016  Score=75.55  Aligned_cols=453  Identities=14%  Similarity=0.097  Sum_probs=257.6

Q ss_pred             HHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC---CCcchHHHHHHHH
Q 039873           33 TLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQ---RNVVSYSSLMTWY  109 (709)
Q Consensus        33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~  109 (709)
                      |-..++ |-..+.+..++.....+++.-..    ...+.....-.+...|+-++|......-..   +..++|..+--.+
T Consensus        11 F~~~lk-~yE~kQYkkgLK~~~~iL~k~~e----HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~   85 (700)
T KOG1156|consen   11 FRRALK-CYETKQYKKGLKLIKQILKKFPE----HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ   85 (700)
T ss_pred             HHHHHH-HHHHHHHHhHHHHHHHHHHhCCc----cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence            334444 33556677778777777773222    222222222335567899999888876654   4567899888888


Q ss_pred             HhCCChhHHHHHHHHhhhCCCCCCChh-hHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 039873          110 LHNGFLLETLKLFKNMVSGDNLEPNEY-IFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEM  188 (709)
Q Consensus       110 ~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~  188 (709)
                      ....++++|++.|....   .+.||.. .+.-+--.-++.++++....               +.+.++.          
T Consensus        86 R~dK~Y~eaiKcy~nAl---~~~~dN~qilrDlslLQ~QmRd~~~~~~---------------tr~~LLq----------  137 (700)
T KOG1156|consen   86 RSDKKYDEAIKCYRNAL---KIEKDNLQILRDLSLLQIQMRDYEGYLE---------------TRNQLLQ----------  137 (700)
T ss_pred             hhhhhHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHHHhhhhHHH---------------HHHHHHH----------
Confidence            88899999999999876   2445432 22222211122233322222               2222211          


Q ss_pred             HHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCC-CCCChhhHHHHH------HHHhcCCCcHHHHHHHHH
Q 039873          189 AKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGS-VRWDSVTYVNAF------GLSASLKDLKLGLQVHSQ  261 (709)
Q Consensus       189 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll------~~~~~~~~~~~a~~~~~~  261 (709)
                             ........|....-++.-.|+...|..+.++..+.. -.|+...|....      ....+.|.++.+.+.+..
T Consensus       138 -------l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~  210 (700)
T KOG1156|consen  138 -------LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD  210 (700)
T ss_pred             -------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence                   111244568888888888888888888888887654 245555553322      233456777777665544


Q ss_pred             HHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCC--CHhhHHHH-HHHHHHcCCHhHHH-HHHHHHHhCCCCCCc
Q 039873          262 MLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETR--NVVLWTAM-VAACFQNEYFEEAL-NLFCGMEYEAIRPNE  337 (709)
Q Consensus       262 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~~g~~pd~  337 (709)
                      -... +......--.-.+.+.+.+++++|..++..+..+  |.+-|+-. ..++.+-.+.-+++ .+|....+. .+--.
T Consensus       211 ~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e  288 (700)
T KOG1156|consen  211 NEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHE  288 (700)
T ss_pred             hhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Ccccc
Confidence            3222 2222334445567788999999999999998764  44444443 34443344444455 555554432 11111


Q ss_pred             cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHH----HHHHHhhcC--------------
Q 039873          338 FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEA----ANKVFSDMR--------------  399 (709)
Q Consensus       338 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~----A~~~f~~~~--------------  399 (709)
                      .....=++......-.+....++....+.|+++   ++..+...|-.-...+-    +..+...+.              
T Consensus       289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E  365 (700)
T KOG1156|consen  289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE  365 (700)
T ss_pred             cchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence            111111111222222334455566666677654   33334444432211111    111111111              


Q ss_pred             CCChhhHHH--HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHH
Q 039873          400 YRDIITWNA--MICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEH  476 (709)
Q Consensus       400 ~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~  476 (709)
                      .|....|+.  ++..|-..|+++.|+.+.+....  -.|+.+ -|..=...+.+.|++++|..+++...+  --.||...
T Consensus       366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~I  441 (700)
T KOG1156|consen  366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAI  441 (700)
T ss_pred             CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHH
Confidence            244555655  56778889999999999999887  477755 454555778999999999999998743  22455444


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCCCCC-C--------HHHHHHHHH--HHHhcCCchHHHHHHHHHHh
Q 039873          477 YTCIVGLLSKAGLLDEAEKFMRSTPVKW-D--------VVAWHTLLN--ASRVHQNYGFGRRIAEYILH  534 (709)
Q Consensus       477 ~~~li~~~~~~g~~~~A~~~~~~~~~~p-d--------~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~  534 (709)
                      -+--+.-..++.+.++|.++.....-.- +        .-.|-.+-.  +|.+.|++.+|+.=|..+.+
T Consensus       442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k  510 (700)
T KOG1156|consen  442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK  510 (700)
T ss_pred             HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence            3355566679999999999854332110 1        224444333  67778888777765554433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.78  E-value=7.5e-05  Score=78.01  Aligned_cols=94  Identities=5%  Similarity=-0.033  Sum_probs=56.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC
Q 039873          477 YTCIVGLLSKAGLLDEAEKFMRS-TPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK  554 (709)
Q Consensus       477 ~~~li~~~~~~g~~~~A~~~~~~-~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  554 (709)
                      +-.++..|-+.|+++.|...++. ++-.|. +..|-+=...+...|+++.|...++++.+++-.|...-.--+.-..++.
T Consensus       374 ~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn  453 (700)
T KOG1156|consen  374 LYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRAN  453 (700)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcc
Confidence            34566777777777777777763 333444 2223233345566677777777777777777555333323444445677


Q ss_pred             CchhHHHHHHHHHhCC
Q 039873          555 RWDGVSKIRKLMKVRK  570 (709)
Q Consensus       555 ~~~~a~~~~~~m~~~~  570 (709)
                      +.++|.++.......|
T Consensus       454 ~i~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  454 EIEEAEEVLSKFTREG  469 (700)
T ss_pred             ccHHHHHHHHHhhhcc
Confidence            7777777776665544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=6.6e-05  Score=74.06  Aligned_cols=365  Identities=10%  Similarity=0.028  Sum_probs=222.3

Q ss_pred             chhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHH-HHhCC-ChhHH--------------HHHHHHhhh---
Q 039873           67 NVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTW-YLHNG-FLLET--------------LKLFKNMVS---  127 (709)
Q Consensus        67 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~-~~~~g-~~~~A--------------~~~~~~m~~---  127 (709)
                      +...--..+..|-..++-+.|.....+.|.+-..--+.|+.+ +.+.| +..++              +....-..+   
T Consensus        96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v  175 (564)
T KOG1174|consen   96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV  175 (564)
T ss_pred             cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence            444555677778888888999998888886433334444433 33332 11111              111111110   


Q ss_pred             -----------CCCCCCChhhHHHHHHHHhc--CCCchHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 039873          128 -----------GDNLEPNEYIFSIVLSSCSR--SGRGAEGRQCHGYVFKS-GLVFCKYVRNALVELYTKCLDVEMAKRLL  193 (709)
Q Consensus       128 -----------~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f  193 (709)
                                 .-.+.|+..+...-+++++.  .++...+-+.+-.+... -+.-++....++.+.|...|+.++|...|
T Consensus       176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F  255 (564)
T KOG1174|consen  176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF  255 (564)
T ss_pred             cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence                       11123333333333444432  23333344444444333 34556778888899999999999999999


Q ss_pred             hhCCCCCcccHHHH---HHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCc
Q 039873          194 DLLPGYDVFEYNSV---LNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPD  270 (709)
Q Consensus       194 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~  270 (709)
                      ++...-|+.+..+|   .-.+.+.|+++.-..+...+.... +-....|..-+...-..++++.|..+-+..++.. +.+
T Consensus       256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~  333 (564)
T KOG1174|consen  256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRN  333 (564)
T ss_pred             HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-ccc
Confidence            88766555443332   233456788888777777765421 1122223333333445667777877777777654 344


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHH-HH
Q 039873          271 VFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVML-NS  346 (709)
Q Consensus       271 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~~  346 (709)
                      ...+-.-...+...|+.++|.-.|+....   -+..+|..|+.+|...|.+.||.-+-+...+. +..+..+...+. ..
T Consensus       334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V  412 (564)
T KOG1174|consen  334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLV  412 (564)
T ss_pred             chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhccee
Confidence            44554445667778899999888887543   37789999999999999999988776654432 222333443331 22


Q ss_pred             Hh-ccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHHcCChHHHH
Q 039873          347 AA-GLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR--YRDIITWNAMICGYSHHGLGREAL  423 (709)
Q Consensus       347 ~~-~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~  423 (709)
                      |. ....-++|+.+++...+.. +.-....+.+...+...|..+++..++++..  .+|....+.|...+...+.+.+|+
T Consensus       413 ~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am  491 (564)
T KOG1174|consen  413 LFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAM  491 (564)
T ss_pred             eccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHH
Confidence            22 2223467777777766654 3334556677777788888888888888755  578888888888888888888888


Q ss_pred             HHHHHHHHCCCCCC
Q 039873          424 TLFQNMLAAEERPN  437 (709)
Q Consensus       424 ~~~~~m~~~g~~pd  437 (709)
                      +.|.....  +.|+
T Consensus       492 ~~y~~ALr--~dP~  503 (564)
T KOG1174|consen  492 EYYYKALR--QDPK  503 (564)
T ss_pred             HHHHHHHh--cCcc
Confidence            88888777  4554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.77  E-value=4.7e-05  Score=81.36  Aligned_cols=255  Identities=15%  Similarity=0.104  Sum_probs=136.2

Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCc-cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh
Q 039873          306 TAMVAACFQNEYFEEALNLFCGMEYEAIRPNE-FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK  384 (709)
Q Consensus       306 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~  384 (709)
                      .-+...|-..|++++|++++++.++.  .|+. ..|..-...+-+.|++++|...++.+.... .-|-++-+-.+..+.+
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHH
Confidence            44456666777777777777776654  3442 345555556667777777777777777655 4466666667777778


Q ss_pred             cCCHHHHHHHHhhcCCCCh----------hhH--HHHHHHHHHcCChHHHHHHHHHHHHC--CCC-------------CC
Q 039873          385 GGNIEAANKVFSDMRYRDI----------ITW--NAMICGYSHHGLGREALTLFQNMLAA--EER-------------PN  437 (709)
Q Consensus       385 ~g~~~~A~~~f~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-------------pd  437 (709)
                      +|++++|.+++....+++.          ..|  ..-..+|.+.|++..|++.|....+.  .+.             ..
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t  354 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMT  354 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhcc
Confidence            8888888877776665431          123  22356777888888887766655431  111             12


Q ss_pred             HHHHHHHHHHHhccc-------cHHHHHHHHHHHHHhhCCCC-----------ChHHHHHHHHHH---HhcCCHHHHHHH
Q 039873          438 HVTFVGVLSACGHLG-------LVQEGFYYLNHLMKQIGIVP-----------GLEHYTCIVGLL---SKAGLLDEAEKF  496 (709)
Q Consensus       438 ~~t~~~ll~a~~~~g-------~~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~---~~~g~~~~A~~~  496 (709)
                      ..+|..+|.-.-+..       -...|.+++-.+...-....           +..--..+-.-.   .+...-+++.+.
T Consensus       355 ~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~  434 (517)
T PF12569_consen  355 LRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKA  434 (517)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            223333333221111       11223333333322100000           000000010000   011111111111


Q ss_pred             H-H--------------hCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHH
Q 039873          497 M-R--------------STPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSK  561 (709)
Q Consensus       497 ~-~--------------~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~  561 (709)
                      = +              ..+.+.|....+.-+.  ....=+++|.++++-+.+..|++..++..--.+|.+.|++--|.+
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~--~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLq  512 (517)
T PF12569_consen  435 AKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLL--KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQ  512 (517)
T ss_pred             HhhhhhhhhccccccccccCCcCCCCccHHHHh--cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHH
Confidence            0 0              0011112111111111  123346889999999999999999999999999999999999888


Q ss_pred             HHHH
Q 039873          562 IRKL  565 (709)
Q Consensus       562 ~~~~  565 (709)
                      .++.
T Consensus       513 aL~k  516 (517)
T PF12569_consen  513 ALKK  516 (517)
T ss_pred             HHHh
Confidence            7653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=5.8e-05  Score=80.45  Aligned_cols=358  Identities=12%  Similarity=0.040  Sum_probs=213.8

Q ss_pred             CchhHHHHHHH--HHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCC--------CCCh
Q 039873           66 ENVVLTNSLVN--LYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNL--------EPNE  135 (709)
Q Consensus        66 ~~~~~~~~ll~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~--------~p~~  135 (709)
                      .|..+..++++  .|..-|+.+.|.+-...+.  .-+.|..|.+.+++..+.+-|.-.+-.|.+.+|.        .|+ 
T Consensus       724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-  800 (1416)
T KOG3617|consen  724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-  800 (1416)
T ss_pred             cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence            57778888876  4778899999988777665  3467999999999999999998888877633332        222 


Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CcccHHHHHHHHHhC
Q 039873          136 YIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGY-DVFEYNSVLNGLIEN  214 (709)
Q Consensus       136 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~  214 (709)
                      .+=..+.-.....|.+++|+.++.+..+..         .|=..|...|.+++|.++-+.-..- -..+|..-..-+-..
T Consensus       801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear  871 (1416)
T KOG3617|consen  801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR  871 (1416)
T ss_pred             chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence            222233333457788999999998887753         3446788889999999887643221 112444445555556


Q ss_pred             CCccHHHHHHHHH----------HhCCC---------CCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHH
Q 039873          215 ECFRGGVEVLGKM----------VSGSV---------RWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINS  275 (709)
Q Consensus       215 g~~~~A~~l~~~m----------~~~g~---------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~  275 (709)
                      ++.+.|++.|++-          +....         +-|...|.-...-.-..|+.+.|..++..+..         |-
T Consensus       872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f  942 (1416)
T KOG3617|consen  872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF  942 (1416)
T ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence            7778887777653          11110         11222333333333445666666665554432         34


Q ss_pred             HHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCC---
Q 039873          276 AMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSA---  352 (709)
Q Consensus       276 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~---  352 (709)
                      +++...|-.|+.++|-++-++-  .|......+...|-..|++.+|..+|.+.+         +|...|+.|-..+-   
T Consensus       943 s~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen  943 SMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDR 1011 (1416)
T ss_pred             hheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHH
Confidence            5566666677777777776653  356666778888999999999999998775         34444444432221   


Q ss_pred             ------------hhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC--------------CCChhhH
Q 039873          353 ------------LRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR--------------YRDIITW  406 (709)
Q Consensus       353 ------------~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--------------~~~~~~~  406 (709)
                                  .-.|-.+|++   .|..     ...-+..|-|.|.+.+|+++--+-.              ..|+...
T Consensus      1012 L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred             HHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence                        1112222221   1211     1223456778888888776532222              1244445


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHH----------CC----------------CCCCHHH----HHHHHHHHhccccHHH
Q 039873          407 NAMICGYSHHGLGREALTLFQNMLA----------AE----------------ERPNHVT----FVGVLSACGHLGLVQE  456 (709)
Q Consensus       407 ~~li~~~~~~g~~~~A~~~~~~m~~----------~g----------------~~pd~~t----~~~ll~a~~~~g~~~~  456 (709)
                      +--..-+..+.++++|..++-..++          .|                -.|+..+    +..+...|.++|.+..
T Consensus      1084 ~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~ 1163 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHA 1163 (1416)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHH
Confidence            5555555666666666655432211          11                1244333    4445567888888777


Q ss_pred             HHHHHHH
Q 039873          457 GFYYLNH  463 (709)
Q Consensus       457 a~~~~~~  463 (709)
                      |-+-|.+
T Consensus      1164 AtKKfTQ 1170 (1416)
T KOG3617|consen 1164 ATKKFTQ 1170 (1416)
T ss_pred             HHHHHhh
Confidence            6655543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.72  E-value=3e-05  Score=84.52  Aligned_cols=496  Identities=10%  Similarity=0.003  Sum_probs=255.2

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHH
Q 039873           68 VVLTNSLVNLYAKCNQISIARQLFDNMRQ---RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSS  144 (709)
Q Consensus        68 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~  144 (709)
                      ...|..|...|...-+...|.+.|+..-+   .|..+|..+...|++...+++|..+.-..-+......-...|..+--.
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            45788888888888888999999998765   456788999999999999999998843322111111112223333333


Q ss_pred             HhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHH---HHHHHhCCCccHHH
Q 039873          145 CSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSV---LNGLIENECFRGGV  221 (709)
Q Consensus       145 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~  221 (709)
                      +...++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|.+...-++.+|-.-   .-.-+..|.+.+|+
T Consensus       572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal  650 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL  650 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence            456677777777777777765 44778899999999999999999999988776555544332   22334578888888


Q ss_pred             HHHHHHHhC------CCCCChhhHHHHHHHHhcCCC-------cHHHHHHHHHHHHcCCCCchHHHHHHHH---------
Q 039873          222 EVLGKMVSG------SVRWDSVTYVNAFGLSASLKD-------LKLGLQVHSQMLKSDIEPDVFINSAMIS---------  279 (709)
Q Consensus       222 ~l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~---------  279 (709)
                      +.+......      +..--..++..+...+...|-       ++.+.+.+.-.+......+...|-.+-+         
T Consensus       651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e  730 (1238)
T KOG1127|consen  651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE  730 (1238)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence            877765431      111112233222222222222       2222232222222221222222222211         


Q ss_pred             ----------HHHh----cCCh---H---HHHHHHHhcc--CCCHhhHHHHHHHHHH----c----CCHhHHHHHHHHHH
Q 039873          280 ----------MYGK----CGKF---S---NAKKVFEGLE--TRNVVLWTAMVAACFQ----N----EYFEEALNLFCGME  329 (709)
Q Consensus       280 ----------~y~~----~g~~---~---~A~~~~~~m~--~~~~~~~~~li~~~~~----~----g~~~~A~~~~~~m~  329 (709)
                                .+.+    .+..   |   -+.+.+-.-.  ..+..+|..++..|.+    .    .+...|+..+++-+
T Consensus       731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV  810 (1238)
T KOG1127|consen  731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV  810 (1238)
T ss_pred             ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence                      1111    1111   0   0011100000  0124556666555544    1    12235666666655


Q ss_pred             hCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhH
Q 039873          330 YEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITW  406 (709)
Q Consensus       330 ~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~  406 (709)
                      +.  ..|...+-..+...+..|++..+...|-..... .+....+|..+.-.+.+..+++-|...|.....   .|...|
T Consensus       811 ~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~W  887 (1238)
T KOG1127|consen  811 SL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQW  887 (1238)
T ss_pred             HH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHH
Confidence            42  233333333344444444444443333222222 234455566666666666666666666665542   233444


Q ss_pred             HHHHHHHHHcCChHHHHHHHHH---------------------------------------HHH---------CCCCCCH
Q 039873          407 NAMICGYSHHGLGREALTLFQN---------------------------------------MLA---------AEERPNH  438 (709)
Q Consensus       407 ~~li~~~~~~g~~~~A~~~~~~---------------------------------------m~~---------~g~~pd~  438 (709)
                      --+.......|+.-+++.+|..                                       ...         .|.+-+.
T Consensus       888 lG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~  967 (1238)
T KOG1127|consen  888 LGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLC  967 (1238)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchh
Confidence            4433333333333333333332                                       111         1222234


Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHH----HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039873          439 VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTC----IVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLN  514 (709)
Q Consensus       439 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~  514 (709)
                      ..|.......-+.+.+..+.+.....+.-...+-+...|+.    ....+...|.++.|..-+...+.+-|..+-.+-+.
T Consensus       968 fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~ 1047 (1238)
T KOG1127|consen  968 FAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLT 1047 (1238)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHH
Confidence            45555555555555555555554443322222333444443    22344445666666665554444444444343333


Q ss_pred             HHHhcCCchHHHHHHHHHHhcCCCCch---hHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          515 ASRVHQNYGFGRRIAEYILHMDPNDVG---TYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       515 ~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      . --.++++.+.+.|++++.+--++..   ....++.....++.-+.|....-+...
T Consensus      1048 l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1048 L-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred             H-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence            3 3357889999999999886533322   223334444566677777766555543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.72  E-value=7.1e-07  Score=84.82  Aligned_cols=222  Identities=12%  Similarity=0.018  Sum_probs=170.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccC--CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchH-HHHHHHhcc
Q 039873          274 NSAMISMYGKCGKFSNAKKVFEGLET--RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFA-VMLNSAAGL  350 (709)
Q Consensus       274 ~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~ll~~~~~~  350 (709)
                      -+-+..+|.+.|.+.+|.+.|+.-.+  +-+.||-.|-..|.+-.+++.|+.+|.+-.+.  .|-.+||. .+...+...
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence            45677888888888888888887653  56778888888888888999999888877654  56666654 345556677


Q ss_pred             CChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHH
Q 039873          351 SALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQ  427 (709)
Q Consensus       351 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~  427 (709)
                      ++.+.+.++++.+.+.. +.++....++...|.-.++.+-|++.|+++.+   .+...|+.+.-+|.-.++++-++.-|+
T Consensus       304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            88888888888888765 55666666777778888899999999887764   567788888888888899999999999


Q ss_pred             HHHHCCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 039873          428 NMLAAEERPNHV--TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST  500 (709)
Q Consensus       428 ~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  500 (709)
                      +....--.|+..  .|..+.......|++..|.+.|+-...  .-.-..+.++.|.-.-.+.|++++|..+++..
T Consensus       383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA  455 (478)
T ss_pred             HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence            988765556543  566666667778999999999887654  22334567888888888889999998888754

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=0.00013  Score=79.46  Aligned_cols=410  Identities=13%  Similarity=0.123  Sum_probs=221.4

Q ss_pred             HHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHH-HHHHHHhC
Q 039873           34 LKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSS-LMTWYLHN  112 (709)
Q Consensus        34 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~-li~~~~~~  112 (709)
                      .-|..-+-++.++..-...++..+..|..    ++.++|+|...|....+-.+  +.+.+    |.. |.+ .+.-||..
T Consensus       842 deLv~EvEkRNRLklLlp~LE~~i~eG~~----d~a~hnAlaKIyIDSNNnPE--~fLke----N~y-YDs~vVGkYCEK  910 (1666)
T KOG0985|consen  842 DELVEEVEKRNRLKLLLPWLESLIQEGSQ----DPATHNALAKIYIDSNNNPE--RFLKE----NPY-YDSKVVGKYCEK  910 (1666)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhccCc----chHHHhhhhheeecCCCChH--Hhccc----CCc-chhhHHhhhhcc
Confidence            34455566677777777788888888876    89999999999987654322  22222    111 222 23335555


Q ss_pred             CChhHHHHHHHHhhhCC----CCCCChhhHHHHHHHHhcCCCc-----------hHHHHHHHHHHHhCCC--CchhHHHH
Q 039873          113 GFLLETLKLFKNMVSGD----NLEPNEYIFSIVLSSCSRSGRG-----------AEGRQCHGYVFKSGLV--FCKYVRNA  175 (709)
Q Consensus       113 g~~~~A~~~~~~m~~~~----g~~p~~~t~~~ll~~~~~~~~~-----------~~a~~~~~~~~~~g~~--~~~~~~~~  175 (709)
                      .++.-|.-.|++=. ..    ++.-....|....+-+....+.           ..-+++.+++++.+++  .|+.-.+.
T Consensus       911 RDP~lA~vaYerGq-cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~  989 (1666)
T KOG0985|consen  911 RDPHLACVAYERGQ-CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSV  989 (1666)
T ss_pred             cCCceEEEeecccC-CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHH
Confidence            55443332222110 00    0011111222222222222222           2235667777777653  45566666


Q ss_pred             HHHHHHhcCChHHHHHHHhhCCC-CCccc-----HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 039873          176 LVELYTKCLDVEMAKRLLDLLPG-YDVFE-----YNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASL  249 (709)
Q Consensus       176 li~~y~~~g~~~~A~~~f~~~~~-~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~  249 (709)
                      -+.++...+-..+-.++++++.- +++++     -|.||-...+. +.....+..+++-.-. .|      .+...+...
T Consensus       990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~------~ia~iai~~ 1061 (1666)
T KOG0985|consen  990 TVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-AP------DIAEIAIEN 1061 (1666)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-ch------hHHHHHhhh
Confidence            77788888888888888887643 33322     33333333332 3444555555543221 11      122334444


Q ss_pred             CCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 039873          250 KDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGME  329 (709)
Q Consensus       250 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  329 (709)
                      +-+++|..+|+..     ..+....+.||.   ..+.++.|.+.-++..+|  ..|..+..+-.+.|...+|++-|-+. 
T Consensus      1062 ~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred             hHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence            5566666666543     334444444443   345666676666666544  45777777777777777777766332 


Q ss_pred             hCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCCh------
Q 039873          330 YEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDI------  403 (709)
Q Consensus       330 ~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~------  403 (709)
                           -|...|.-++..+.+.|.+++-..++..+.+..-+|.  +-+.||-+|++.+++.+-.+...   -||+      
T Consensus      1131 -----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQV 1200 (1666)
T ss_pred             -----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHH
Confidence                 2455677778888888888777777776666554443  34567777777777766655432   2333      


Q ss_pred             --------------------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 039873          404 --------------------ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNH  463 (709)
Q Consensus       404 --------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~  463 (709)
                                          .-|..|...+...|++..|...-++.      .+..||.-+-.||...+.+.-|     +
T Consensus      1201 Gdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----Q 1269 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----Q 1269 (1666)
T ss_pred             hHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----H
Confidence                                34444455555555555554443322      2334555555555554443322     1


Q ss_pred             HHHhhCC--CCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 039873          464 LMKQIGI--VPGLEHYTCIVGLLSKAGLLDEAEKFMR  498 (709)
Q Consensus       464 ~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~  498 (709)
                      |   .|+  .....-..-|+.-|-..|.++|-..+++
T Consensus      1270 i---CGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1270 I---CGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred             h---cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence            1   222  2233445556666666677766666665

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.60  E-value=3e-05  Score=82.80  Aligned_cols=84  Identities=19%  Similarity=0.169  Sum_probs=42.5

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhc
Q 039873          410 ICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKA  487 (709)
Q Consensus       410 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~  487 (709)
                      ...|-..|++++|+++.++.++  ..|+.+ .|..-...+-+.|++++|.+..+....   +.+ |...-+-.+..+.|+
T Consensus       201 Aqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  201 AQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARE---LDLADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHC
Confidence            4445555666666666665555  344432 444445555566666666555555422   222 233333344445566


Q ss_pred             CCHHHHHHHHH
Q 039873          488 GLLDEAEKFMR  498 (709)
Q Consensus       488 g~~~~A~~~~~  498 (709)
                      |++++|.+++.
T Consensus       276 ~~~e~A~~~~~  286 (517)
T PF12569_consen  276 GRIEEAEKTAS  286 (517)
T ss_pred             CCHHHHHHHHH
Confidence            66666665543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.58  E-value=1.9e-06  Score=88.56  Aligned_cols=218  Identities=13%  Similarity=0.042  Sum_probs=170.6

Q ss_pred             hccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHH
Q 039873          348 AGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALT  424 (709)
Q Consensus       348 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~  424 (709)
                      .+.|++..|.-.|+..++.. +.+...|--|...-...++-..|+..+.+..+   .|....-+|...|...|.-.+|+.
T Consensus       296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            45677777877787777765 56677777787777888888888888877663   456677778888888898889999


Q ss_pred             HHHHHHHCCCC--------CCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 039873          425 LFQNMLAAEER--------PNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF  496 (709)
Q Consensus       425 ~~~~m~~~g~~--------pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  496 (709)
                      +++.-+....+        ++..+-..  ........+....++|-.+....+..+|..++.+|.-+|--.|.+++|.+.
T Consensus       375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc  452 (579)
T KOG1125|consen  375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC  452 (579)
T ss_pred             HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence            88887653210        01000000  122333445566777777777778778888999999999999999999999


Q ss_pred             HHh-CCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          497 MRS-TPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       497 ~~~-~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      |+. +.++|+ ...||-|...++.-.+.++|+..|.+++++.|.-..+-..|+-.|...|.++||.+.|=....
T Consensus       453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            984 466775 889999999999999999999999999999999888889999999999999999999887765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.57  E-value=9.2e-05  Score=77.36  Aligned_cols=195  Identities=9%  Similarity=-0.025  Sum_probs=102.3

Q ss_pred             hHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHh
Q 039873          376 NALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEE-RPNH--VTFVGVLSACG  449 (709)
Q Consensus       376 ~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~--~t~~~ll~a~~  449 (709)
                      ..+...+...|++++|...+++..+   .+...+..+...|...|++++|..++++.....- .|+.  ..+..+...+.
T Consensus       118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~  197 (355)
T cd05804         118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL  197 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence            3444555666666666666665542   2344555666666666666666666666555321 1222  12334555566


Q ss_pred             ccccHHHHHHHHHHHHHhhCCCCChHHH-H--HHHHHHHhcCCHHHHHHH---HH---hC-CCCCCHHHHHHHHHHHHhc
Q 039873          450 HLGLVQEGFYYLNHLMKQIGIVPGLEHY-T--CIVGLLSKAGLLDEAEKF---MR---ST-PVKWDVVAWHTLLNASRVH  519 (709)
Q Consensus       450 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~---~~-~~~pd~~~~~~ll~~~~~~  519 (709)
                      ..|++++|..+++.........+..... +  .+...+...|..+.+.+.   ..   .. +.............++...
T Consensus       198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  277 (355)
T cd05804         198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA  277 (355)
T ss_pred             HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence            6666666666666653211111111111 1  222223333322222222   11   11 1001112222455566777


Q ss_pred             CCchHHHHHHHHHHhcC-C--------CCchhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873          520 QNYGFGRRIAEYILHMD-P--------NDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK  570 (709)
Q Consensus       520 g~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  570 (709)
                      |+.+.|..+++.+.... .        ...........++...|++++|.+.+.......
T Consensus       278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            88888888887765522 1        123455677778889999999999999887643

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.57  E-value=1.1e-05  Score=73.66  Aligned_cols=190  Identities=13%  Similarity=0.066  Sum_probs=126.3

Q ss_pred             HHHhHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccc
Q 039873          377 ALINMYAKGGNIEAANKVFSDMRY--R-DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLG  452 (709)
Q Consensus       377 ~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g  452 (709)
                      .|.-.|...|+...|..-+++..+  | +..+|..+...|.+.|..+.|.+.|++...  +.|+ ....|....-+|..|
T Consensus        40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCC
Confidence            344567777777777777777663  2 334777777777777777777777777776  4554 335555555566677


Q ss_pred             cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHH
Q 039873          453 LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAE  530 (709)
Q Consensus       453 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~  530 (709)
                      .+++|.+.|+..+..-...--..+|..+.-+..+.|+.+.|++.|++. ...|+ +.+.-.+.......|++-.|...++
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence            777777777777664222222346777777777777777777777632 33344 5556666666777777777777777


Q ss_pred             HHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          531 YILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       531 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ......+.........+.+-...|+-+.+-++-.++..
T Consensus       198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            77776666666666666666777777777666655543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.55  E-value=0.0026  Score=75.66  Aligned_cols=357  Identities=10%  Similarity=-0.067  Sum_probs=172.3

Q ss_pred             HHHHhcCChHHHHHHHhhCCCCCccc--HHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHH
Q 039873          178 ELYTKCLDVEMAKRLLDLLPGYDVFE--YNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLG  255 (709)
Q Consensus       178 ~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  255 (709)
                      ..|...|++.+|..........+...  .......+...|+++.+..++..+.......+..........+...|+++++
T Consensus       349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a  428 (903)
T PRK04841        349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV  428 (903)
T ss_pred             HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence            33555666666666555554332111  1111233445677776666666552211111222223333344566788888


Q ss_pred             HHHHHHHHHcCC------CCc--hHHHHHHHHHHHhcCChHHHHHHHHhccC----CCH----hhHHHHHHHHHHcCCHh
Q 039873          256 LQVHSQMLKSDI------EPD--VFINSAMISMYGKCGKFSNAKKVFEGLET----RNV----VLWTAMVAACFQNEYFE  319 (709)
Q Consensus       256 ~~~~~~~~~~g~------~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~~~g~~~  319 (709)
                      ...+....+.--      .+.  ......+...+...|++++|...+++...    .+.    ..++.+...+...|+++
T Consensus       429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~  508 (903)
T PRK04841        429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA  508 (903)
T ss_pred             HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence            777776654310      111  11222233455667888888777776432    121    23455555667778888


Q ss_pred             HHHHHHHHHHhCCCC---CC--ccchHHHHHHHhccCChhHHHHHHHHHHHh----CCCC---ChhHHhHHHhHHHhcCC
Q 039873          320 EALNLFCGMEYEAIR---PN--EFTFAVMLNSAAGLSALRHGDLLHAHIEKS----GFKE---HLIVGNALINMYAKGGN  387 (709)
Q Consensus       320 ~A~~~~~~m~~~g~~---pd--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----g~~~---~~~~~~~li~~y~~~g~  387 (709)
                      +|...+.+.....-.   +.  ..++..+...+...|+++.|...+......    +...   ....+..+...+...|+
T Consensus       509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~  588 (903)
T PRK04841        509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR  588 (903)
T ss_pred             HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence            888877776542111   11  122333444556677777777776665542    2111   12233344455556677


Q ss_pred             HHHHHHHHhhcCC------C--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHH-----HHHHHHhcccc
Q 039873          388 IEAANKVFSDMRY------R--DIITWNAMICGYSHHGLGREALTLFQNMLAAEER-PNHVTFV-----GVLSACGHLGL  453 (709)
Q Consensus       388 ~~~A~~~f~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~-----~ll~a~~~~g~  453 (709)
                      +++|...+.+...      +  ....+..+...+...|++++|.+.+++.....-. .....+.     ..+..+...|.
T Consensus       589 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  668 (903)
T PRK04841        589 LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD  668 (903)
T ss_pred             HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence            7777666665431      1  1223333445566667777777766665431100 0000000     01122233566


Q ss_pred             HHHHHHHHHHHHHhhCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC
Q 039873          454 VQEGFYYLNHLMKQIGIVPGL----EHYTCIVGLLSKAGLLDEAEKFMRST-------PVKWD-VVAWHTLLNASRVHQN  521 (709)
Q Consensus       454 ~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~pd-~~~~~~ll~~~~~~g~  521 (709)
                      .+.+.+.+.....  ......    ..+..+..++...|+.++|...+++.       +..++ ..+...+..++...|+
T Consensus       669 ~~~A~~~l~~~~~--~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~  746 (903)
T PRK04841        669 KEAAANWLRQAPK--PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR  746 (903)
T ss_pred             HHHHHHHHHhcCC--CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence            6666665544321  000000    01234445556666666666654432       11111 1233334445566666


Q ss_pred             chHHHHHHHHHHhcC
Q 039873          522 YGFGRRIAEYILHMD  536 (709)
Q Consensus       522 ~~~a~~~~~~~~~~~  536 (709)
                      .+.|...+.+++++.
T Consensus       747 ~~~A~~~L~~Al~la  761 (903)
T PRK04841        747 KSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            666666666666544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.55  E-value=7.9e-06  Score=81.17  Aligned_cols=158  Identities=13%  Similarity=0.052  Sum_probs=104.1

Q ss_pred             hHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c
Q 039873          376 NALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGH----L  451 (709)
Q Consensus       376 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~  451 (709)
                      .....+|...|++++|++++.+.  .+.......+..|.+.++++.|.+.++.|.+  +..|. +...+..++..    .
T Consensus       106 ~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~  180 (290)
T PF04733_consen  106 LLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGG  180 (290)
T ss_dssp             HHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCc
Confidence            33445677789999999888876  4566666778888999999999999999987  34443 34444444332    2


Q ss_pred             ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCc-hHHHHH
Q 039873          452 GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS-TPVKWD-VVAWHTLLNASRVHQNY-GFGRRI  528 (709)
Q Consensus       452 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~pd-~~~~~~ll~~~~~~g~~-~~a~~~  528 (709)
                      ..+.+|..+|+++..  ...+++...+.+.-+....|++++|.+++++ +...|+ +.++-.++......|+. +.+.+.
T Consensus       181 e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~  258 (290)
T PF04733_consen  181 EKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY  258 (290)
T ss_dssp             TCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             hhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence            357888888888754  3456667777777777788888888777653 333343 55555666666666665 556677


Q ss_pred             HHHHHhcCCCCc
Q 039873          529 AEYILHMDPNDV  540 (709)
Q Consensus       529 ~~~~~~~~p~~~  540 (709)
                      ..++....|+.+
T Consensus       259 l~qL~~~~p~h~  270 (290)
T PF04733_consen  259 LSQLKQSNPNHP  270 (290)
T ss_dssp             HHHCHHHTTTSH
T ss_pred             HHHHHHhCCCCh
Confidence            777777777643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12854 PPR_1: PPR repeat

Probab=98.53  E-value=1.4e-07  Score=59.58  Aligned_cols=34  Identities=29%  Similarity=0.558  Sum_probs=27.8

Q ss_pred             cCCCCchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 039873          265 SDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLE  298 (709)
Q Consensus       265 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~  298 (709)
                      .|+.||..+||+||++|++.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            3678888888888888888888888888888874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.53  E-value=0.0005  Score=73.62  Aligned_cols=413  Identities=11%  Similarity=0.113  Sum_probs=231.2

Q ss_pred             HhcCCCCCcchHHHHHH--HHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHh-C--
Q 039873           91 FDNMRQRNVVSYSSLMT--WYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKS-G--  165 (709)
Q Consensus        91 f~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g--  165 (709)
                      |-....-|.+|-.+++.  -|+.-|+.+.|.+-.+.++       +...|..+.+.|.+.++++-|+-.++.|... |  
T Consensus       718 Fvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaR  790 (1416)
T KOG3617|consen  718 FVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGAR  790 (1416)
T ss_pred             hcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHH
Confidence            33334456777777775  4778899999998887776       5678999999999999998888777766432 1  


Q ss_pred             -----C-CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhH
Q 039873          166 -----L-VFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTY  239 (709)
Q Consensus       166 -----~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  239 (709)
                           . .++ .+-....-.-...|.+++|+.++.+-..-     ..|=..|-..|.+++|+++-+.--+-.++   .||
T Consensus       791 AlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~-----DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Ty  861 (1416)
T KOG3617|consen  791 ALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY-----DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTY  861 (1416)
T ss_pred             HHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHhcccHHHHHHHHhhccceehh---hhH
Confidence                 1 121 22222223334667888888888775543     33344555678888888876653332222   355


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHh
Q 039873          240 VNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFE  319 (709)
Q Consensus       240 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~  319 (709)
                      ..-..-+...++.+.|.+.|+..   | .+--.+...|.      .+....+...+.+.++....|  ...-+-..|+.+
T Consensus       862 y~yA~~Lear~Di~~AleyyEK~---~-~hafev~rmL~------e~p~~~e~Yv~~~~d~~L~~W--WgqYlES~Gemd  929 (1416)
T KOG3617|consen  862 YNYAKYLEARRDIEAALEYYEKA---G-VHAFEVFRMLK------EYPKQIEQYVRRKRDESLYSW--WGQYLESVGEMD  929 (1416)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhc---C-ChHHHHHHHHH------hChHHHHHHHHhccchHHHHH--HHHHHhcccchH
Confidence            55555555667777777776543   2 11111111111      123333444445554444333  334444678899


Q ss_pred             HHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC
Q 039873          320 EALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR  399 (709)
Q Consensus       320 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~  399 (709)
                      .|+.+|.....         |-+++...|-.|+.++|-+|-++      .-|....-.|..+|-..|++.+|...|.+..
T Consensus       930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            99998877653         45566667778888888877654      3356667778889999999999998887764


Q ss_pred             CCChhhHHHHHHHHHHcC---------------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHH----
Q 039873          400 YRDIITWNAMICGYSHHG---------------LGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYY----  460 (709)
Q Consensus       400 ~~~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~----  460 (709)
                           ++..-|..+-.++               +.-.|-.+|++.   |..     +...+.-|-++|.+.+|+++    
T Consensus       995 -----afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~t 1061 (1416)
T KOG3617|consen  995 -----AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRT 1061 (1416)
T ss_pred             -----HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhh
Confidence                 2222333222222               122222333321   111     11122234455555555433    


Q ss_pred             -----HHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 039873          461 -----LNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHM  535 (709)
Q Consensus       461 -----~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  535 (709)
                           ++.+.++..-..|+...+.-.+.+....++++|..++-...      -+.--+. .+...+....+++.+.|.--
T Consensus      1062 qQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~Alq-lC~~~nv~vtee~aE~mTp~ 1134 (1416)
T KOG3617|consen 1062 QQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQ-LCKNRNVRVTEEFAELMTPT 1134 (1416)
T ss_pred             cccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHH-HHhcCCCchhHHHHHhcCcC
Confidence                 22223333333445555555555666666666665543210      0111111 23344455555555554321


Q ss_pred             ---CCCC---chhHHHHHHHhhhcCCchhHHHHHHHH
Q 039873          536 ---DPND---VGTYILLSNMYAKEKRWDGVSKIRKLM  566 (709)
Q Consensus       536 ---~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m  566 (709)
                         .|+.   ......++..|.++|.|.-|.+-|.+.
T Consensus      1135 Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1135 KDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             cCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence               1221   235667888888999888887766654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.49  E-value=1.5e-05  Score=89.66  Aligned_cols=199  Identities=13%  Similarity=0.078  Sum_probs=164.6

Q ss_pred             CCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 039873          369 KEHLIVGNALINMYAKGGNIEAANKVFSDMRY--------RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVT  440 (709)
Q Consensus       369 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t  440 (709)
                      +.+...|-..|......+++++|++++++...        .-...|.++++.-...|.-+...++|+++.+.  .--...
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence            45567788888888899999999999998763        13458999998888889888999999999883  223456


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh-CCCCC---CHHHHHHHHHHH
Q 039873          441 FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS-TPVKW---DVVAWHTLLNAS  516 (709)
Q Consensus       441 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p---d~~~~~~ll~~~  516 (709)
                      |..|+..|.+.+..++|-++++.|.++++  -...+|..+++.+.+...-+.|.+++++ +..-|   ......-.+..-
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            88889999999999999999999999877  4556899999999999999999998763 22223   244444555556


Q ss_pred             HhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873          517 RVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKV  571 (709)
Q Consensus       517 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  571 (709)
                      .++|+.+.|+.+|+..+.-.|.....|..++++-.+.|..+.++.+|++....++
T Consensus      1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence            7899999999999999999999999999999999999999999999999998765

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=0.00012  Score=69.14  Aligned_cols=311  Identities=13%  Similarity=0.062  Sum_probs=173.7

Q ss_pred             HHHHHHHHccCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHH-HHHHhc
Q 039873           72 NSLVNLYAKCNQISIARQLFDNMRQR---NVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIV-LSSCSR  147 (709)
Q Consensus        72 ~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~l-l~~~~~  147 (709)
                      ++.+..+.+..++++|++++..-.++   +....+.|-.+|.+..++..|.+.|+++-+   ..|...-|..- ...+-+
T Consensus        14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQSLYK   90 (459)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHHHH
Confidence            34445556666777777766655442   344455566666677777777777777642   34444333322 223334


Q ss_pred             CCCchHHHHHHHHHHHhCCCCchhHHHHHH----HHHHhcCChHHHHHHHhhCCC-CCcccHHHHHHHHHhCCCccHHHH
Q 039873          148 SGRGAEGRQCHGYVFKSGLVFCKYVRNALV----ELYTKCLDVEMAKRLLDLLPG-YDVFEYNSVLNGLIENECFRGGVE  222 (709)
Q Consensus       148 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li----~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~  222 (709)
                      .+.+..|..+...|...   +  ...+..+    ...-..+++..++.+.++.+. .+..+.+...-...+.|++++|++
T Consensus        91 A~i~ADALrV~~~~~D~---~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq  165 (459)
T KOG4340|consen   91 ACIYADALRVAFLLLDN---P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ  165 (459)
T ss_pred             hcccHHHHHHHHHhcCC---H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence            45555665555544321   1  1111111    111245778888888888884 566666665566678899999999


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh--ccC-
Q 039873          223 VLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEG--LET-  299 (709)
Q Consensus       223 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~--m~~-  299 (709)
                      -|+...+-+---....|+..+..+ +.++.+.|.+...+++++|+.......-.+..      +.-++..+=+.  |.. 
T Consensus       166 kFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~t------egiDvrsvgNt~~lh~S  238 (459)
T KOG4340|consen  166 KFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTT------EGIDVRSVGNTLVLHQS  238 (459)
T ss_pred             HHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCcccee------ccCchhcccchHHHHHH
Confidence            998887643333445677666444 56788889988888888875432211100000      00000000000  000 


Q ss_pred             CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh-CCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHH
Q 039873          300 RNVVLWTAMVAACFQNEYFEEALNLFCGMEY-EAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNAL  378 (709)
Q Consensus       300 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l  378 (709)
                      .=+..+|.-...+.+.|+++.|.+.+..|.- ..-..|.+|...+.-.- ..+++..+..-+..+...+ +....++..+
T Consensus       239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANl  316 (459)
T KOG4340|consen  239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANL  316 (459)
T ss_pred             HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence            0012344444556677788888777777753 22345667765543221 2234555555555666554 3445666677


Q ss_pred             HhHHHhcCCHHHHHHHHhhcC
Q 039873          379 INMYAKGGNIEAANKVFSDMR  399 (709)
Q Consensus       379 i~~y~~~g~~~~A~~~f~~~~  399 (709)
                      +-.|||..-++-|.+++.+-.
T Consensus       317 LllyCKNeyf~lAADvLAEn~  337 (459)
T KOG4340|consen  317 LLLYCKNEYFDLAADVLAENA  337 (459)
T ss_pred             HHHHhhhHHHhHHHHHHhhCc
Confidence            778888888888888887654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=0.0001  Score=75.57  Aligned_cols=215  Identities=13%  Similarity=0.049  Sum_probs=138.8

Q ss_pred             HHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChh----------hHHHHHH
Q 039873          342 VMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDII----------TWNAMIC  411 (709)
Q Consensus       342 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----------~~~~li~  411 (709)
                      .+.++..+..+++.+.+-+...+...  .+..-++....+|...|...+....-+...+..-.          +...+..
T Consensus       229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~  306 (539)
T KOG0548|consen  229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN  306 (539)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence            34555556666777777777776655  55555666777788777776666554443322111          1222344


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChH-HHHHHHHHHHhcCCH
Q 039873          412 GYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLE-HYTCIVGLLSKAGLL  490 (709)
Q Consensus       412 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~  490 (709)
                      +|.+.++++.|+..|++.......||..+         +....+++.......   .-+.|... -...=..-+.+.|++
T Consensus       307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne~Fk~gdy  374 (539)
T KOG0548|consen  307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERK---AYINPEKAEEEREKGNEAFKKGDY  374 (539)
T ss_pred             hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHH---HhhChhHHHHHHHHHHHHHhccCH
Confidence            66677788888888888766544554322         122333333332222   12233321 111225566788899


Q ss_pred             HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          491 DEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       491 ~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      .+|.+.+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|.-=+-++....+|++|.+.|.+..+
T Consensus       375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9998887754 2335 4778888888888999999999999999999998888888888888888899999988887766


Q ss_pred             CC
Q 039873          569 RK  570 (709)
Q Consensus       569 ~~  570 (709)
                      .+
T Consensus       455 ~d  456 (539)
T KOG0548|consen  455 LD  456 (539)
T ss_pred             cC
Confidence            43

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.46  E-value=0.00014  Score=86.38  Aligned_cols=323  Identities=13%  Similarity=0.016  Sum_probs=202.7

Q ss_pred             hcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC----CC------H--hhHHHHHHHHHH
Q 039873          247 ASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET----RN------V--VLWTAMVAACFQ  314 (709)
Q Consensus       247 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~------~--~~~~~li~~~~~  314 (709)
                      ...|+.+.....+..+.......+..........+...|+.++|...++....    .+      .  .....+...+..
T Consensus       385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  464 (903)
T PRK04841        385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN  464 (903)
T ss_pred             HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence            34566666656555432111112222334445556678999999888876531    11      1  111222345568


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCCc----cchHHHHHHHhccCChhHHHHHHHHHHHh----CC-CCChhHHhHHHhHHHhc
Q 039873          315 NEYFEEALNLFCGMEYEAIRPNE----FTFAVMLNSAAGLSALRHGDLLHAHIEKS----GF-KEHLIVGNALINMYAKG  385 (709)
Q Consensus       315 ~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~~li~~y~~~  385 (709)
                      .|++++|...+++....-...+.    .....+...+...|+++.|...+......    |- .........+...+...
T Consensus       465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~  544 (903)
T PRK04841        465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ  544 (903)
T ss_pred             CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence            99999999999987753111121    12334445567789999999998887653    21 11123445667788899


Q ss_pred             CCHHHHHHHHhhcCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhc
Q 039873          386 GNIEAANKVFSDMRY-------R----DIITWNAMICGYSHHGLGREALTLFQNMLAA--EERPN--HVTFVGVLSACGH  450 (709)
Q Consensus       386 g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd--~~t~~~ll~a~~~  450 (709)
                      |++++|...+++...       +    ....+..+...+...|++++|...+++....  ...+.  ..++..+......
T Consensus       545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  624 (903)
T PRK04841        545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA  624 (903)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence            999999998876542       1    1223445556677789999999999887653  11222  2234445556778


Q ss_pred             cccHHHHHHHHHHHHHhhCCCCChHHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhc
Q 039873          451 LGLVQEGFYYLNHLMKQIGIVPGLEHY-----TCIVGLLSKAGLLDEAEKFMRSTPVK--WDV----VAWHTLLNASRVH  519 (709)
Q Consensus       451 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--pd~----~~~~~ll~~~~~~  519 (709)
                      .|+.++|.+.+...............+     ......+...|+.+.|.+.+......  ...    ..+..+..++...
T Consensus       625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~  704 (903)
T PRK04841        625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL  704 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence            899999999988875421111111111     11224456689999999998654311  111    1134556678889


Q ss_pred             CCchHHHHHHHHHHhcC------CCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          520 QNYGFGRRIAEYILHMD------PNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       520 g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      |+.++|...++++.+..      +....++..++.+|...|+.++|...+.+..+.
T Consensus       705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999987742      122346778889999999999999999999864

>PF12854 PPR_1: PPR repeat

Probab=98.45  E-value=2.5e-07  Score=58.41  Aligned_cols=33  Identities=30%  Similarity=0.638  Sum_probs=23.7

Q ss_pred             CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC
Q 039873          367 GFKEHLIVGNALINMYAKGGNIEAANKVFSDMR  399 (709)
Q Consensus       367 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~  399 (709)
                      |+.||..+||+||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            566777777777777777777777777777663

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.45  E-value=2.3e-06  Score=84.97  Aligned_cols=149  Identities=15%  Similarity=0.002  Sum_probs=113.4

Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChH---HHHHHHHHHHhc
Q 039873          411 CGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLE---HYTCIVGLLSKA  487 (709)
Q Consensus       411 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~  487 (709)
                      ..|...|++++|++++++-      .+.......+..+.+.++++.|.+.++.|.   .+..|..   ...+.+..+.-.
T Consensus       110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~  180 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGG  180 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCc
Confidence            4556679999999998752      345566677888999999999999999984   3444532   233444444444


Q ss_pred             CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCc-hhHHHHHH
Q 039873          488 GLLDEAEKFMRSTPV--KWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRW-DGVSKIRK  564 (709)
Q Consensus       488 g~~~~A~~~~~~~~~--~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~  564 (709)
                      +.+.+|..+|+++.-  .+++.+.+.+..+....|++++|+++++++++.+|.++.+...++-+....|+. +.+.+.+.
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            579999999997743  367888888888999999999999999999999999999999999999999998 56778888


Q ss_pred             HHHh
Q 039873          565 LMKV  568 (709)
Q Consensus       565 ~m~~  568 (709)
                      +++.
T Consensus       261 qL~~  264 (290)
T PF04733_consen  261 QLKQ  264 (290)
T ss_dssp             HCHH
T ss_pred             HHHH
Confidence            8875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.43  E-value=0.00047  Score=72.02  Aligned_cols=90  Identities=11%  Similarity=0.049  Sum_probs=39.7

Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-ccchHHHHHHHhccCChhHHHHHHHHHHHhCC-CCCh--hHHhHHHhHH
Q 039873          307 AMVAACFQNEYFEEALNLFCGMEYEAIRPN-EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGF-KEHL--IVGNALINMY  382 (709)
Q Consensus       307 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~-~~~~--~~~~~li~~y  382 (709)
                      .+...+...|++++|.+.+++..+..  |+ ...+..+...+...|++++|...+....+..- .++.  ..+..+...|
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~  196 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY  196 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence            33345555666666666666655432  22 22333333344444444444444444443211 0111  1222344444


Q ss_pred             HhcCCHHHHHHHHhhc
Q 039873          383 AKGGNIEAANKVFSDM  398 (709)
Q Consensus       383 ~~~g~~~~A~~~f~~~  398 (709)
                      ...|+.++|..+|++.
T Consensus       197 ~~~G~~~~A~~~~~~~  212 (355)
T cd05804         197 LERGDYEAALAIYDTH  212 (355)
T ss_pred             HHCCCHHHHHHHHHHH
Confidence            5555555555555543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=2.6e-05  Score=73.46  Aligned_cols=311  Identities=13%  Similarity=0.106  Sum_probs=162.7

Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC--CCHhhHHH-HHHHHHHc
Q 039873          239 YVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET--RNVVLWTA-MVAACFQN  315 (709)
Q Consensus       239 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~~~~  315 (709)
                      +++++..+.+..+++.+.+++..-.+.. +.+....+.|..+|-...++..|-..++++..  |...-|.. -...+-+.
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A   91 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA   91 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence            4444444445555555555555444442 22445556666667777777777777777654  22222211 12345566


Q ss_pred             CCHhHHHHHHHHHHhCCCCCCccchHHHHHH--HhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHH
Q 039873          316 EYFEEALNLFCGMEYEAIRPNEFTFAVMLNS--AAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANK  393 (709)
Q Consensus       316 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~  393 (709)
                      +.+.+|+.+...|...   |+...-..-+.+  ..+.+++..++.+.++....   .+..+.+...-...+.|+.+.|.+
T Consensus        92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvq  165 (459)
T KOG4340|consen   92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQ  165 (459)
T ss_pred             cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHH
Confidence            6777777777666532   111111111111  12234444444444433221   122233333334455666666666


Q ss_pred             HHhhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhC
Q 039873          394 VFSDMRY----RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIG  469 (709)
Q Consensus       394 ~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~  469 (709)
                      -|+...+    .....||.-+ +..+.|++..|+++..+.++.|++--+..-..+..--.....+..-..++.+.+    
T Consensus       166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal----  240 (459)
T KOG4340|consen  166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL----  240 (459)
T ss_pred             HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH----
Confidence            6665542    2334454333 333456666666666666666654211100000000000000000011111111    


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHH
Q 039873          470 IVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPV----KWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYIL  545 (709)
Q Consensus       470 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  545 (709)
                          +..+|.-...+.+.|+++.|.+-+-.||-    +.|++|...+.-. -..+++..+.+-+.-+++++|--..+|..
T Consensus       241 ----~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFAN  315 (459)
T KOG4340|consen  241 ----VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFAN  315 (459)
T ss_pred             ----HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHH
Confidence                11233333456788999999999988862    3467887765432 23567777888888889999887889999


Q ss_pred             HHHHhhhcCCchhHHHHHHHH
Q 039873          546 LSNMYAKEKRWDGVSKIRKLM  566 (709)
Q Consensus       546 l~~~~~~~g~~~~a~~~~~~m  566 (709)
                      ++-+|++..-++-|..++-+-
T Consensus       316 lLllyCKNeyf~lAADvLAEn  336 (459)
T KOG4340|consen  316 LLLLYCKNEYFDLAADVLAEN  336 (459)
T ss_pred             HHHHHhhhHHHhHHHHHHhhC
Confidence            999999999999988887543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.38  E-value=0.0044  Score=63.81  Aligned_cols=419  Identities=13%  Similarity=0.130  Sum_probs=208.3

Q ss_pred             CchhHHHHHHHHHHccCChHHHHHHHhcCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHH
Q 039873           66 ENVVLTNSLVNLYAKCNQISIARQLFDNMRQ--RN-VVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVL  142 (709)
Q Consensus        66 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll  142 (709)
                      -|..+|+.||+-+... .++++++.++++..  |. ...|..-|..-.+.++++....+|.+.+ ..-.  +...|..-|
T Consensus        18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL-vkvL--nlDLW~lYl   93 (656)
T KOG1914|consen   18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCL-VKVL--NLDLWKLYL   93 (656)
T ss_pred             ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHh--hHhHHHHHH
Confidence            5788888888877766 88888888888865  33 3568888888888888888888888876 3322  344454444


Q ss_pred             HHHhcC-CCchHHH----HHHHHH-HHhCCCCc-hhHHHHHHHHH---------HhcCChHHHHHHHhhCCCC-------
Q 039873          143 SSCSRS-GRGAEGR----QCHGYV-FKSGLVFC-KYVRNALVELY---------TKCLDVEMAKRLLDLLPGY-------  199 (709)
Q Consensus       143 ~~~~~~-~~~~~a~----~~~~~~-~~~g~~~~-~~~~~~li~~y---------~~~g~~~~A~~~f~~~~~~-------  199 (709)
                      .-..+. ++....+    +.++.+ .+.|+++- ...|+..+...         ....+++..++++.++...       
T Consensus        94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk  173 (656)
T KOG1914|consen   94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK  173 (656)
T ss_pred             HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence            433322 2222222    223332 34454432 33455555443         3344566777777776541       


Q ss_pred             ---CcccHHHHHHHHH-------hCCCccHHHHHHHHHHh--CCCCCChhh---------------HHHHHHHHhcCCCc
Q 039873          200 ---DVFEYNSVLNGLI-------ENECFRGGVEVLGKMVS--GSVRWDSVT---------------YVNAFGLSASLKDL  252 (709)
Q Consensus       200 ---~~~~~~~li~~~~-------~~g~~~~A~~l~~~m~~--~g~~p~~~t---------------~~~ll~~~~~~~~~  252 (709)
                         |-..|..=|+...       +...+..|.++++++..  .|..-+..+               |..+|..= +.+-+
T Consensus       174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksNpL  252 (656)
T KOG1914|consen  174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSNPL  252 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCc
Confidence               2222222221111       23345566666666643  343322222               22222211 11111


Q ss_pred             H---------HHHHHHHHHH-HcCCCCchHHHH-----HHHHHHHhcCChH-------HHHHHHHhccC----CCHhhHH
Q 039873          253 K---------LGLQVHSQML-KSDIEPDVFINS-----AMISMYGKCGKFS-------NAKKVFEGLET----RNVVLWT  306 (709)
Q Consensus       253 ~---------~a~~~~~~~~-~~g~~~~~~~~~-----~li~~y~~~g~~~-------~A~~~~~~m~~----~~~~~~~  306 (709)
                      .         ...-+|++.+ -.++.|++....     ..-+.+...|+..       ++.++++...+    .+...|.
T Consensus       253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~  332 (656)
T KOG1914|consen  253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF  332 (656)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0         0111122221 123333332111     1112333344433       33333333222    1122222


Q ss_pred             HHHHHH---HHcCCHhHHHHHHHHHHhC-CCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCC-ChhHHhHHHhH
Q 039873          307 AMVAAC---FQNEYFEEALNLFCGMEYE-AIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKE-HLIVGNALINM  381 (709)
Q Consensus       307 ~li~~~---~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~  381 (709)
                      .+..--   .+....+.....+++.... ...|+ .+|...++...+..-++.|+.+|..+.+.+..+ +++++++++..
T Consensus       333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy  411 (656)
T KOG1914|consen  333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY  411 (656)
T ss_pred             HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence            221100   0011244444555555432 22232 355666666666666777777777777666555 66677777766


Q ss_pred             HHhcCCHHHHHHHHhhcCC--CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHH
Q 039873          382 YAKGGNIEAANKVFSDMRY--RDI-ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNH--VTFVGVLSACGHLGLVQE  456 (709)
Q Consensus       382 y~~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~  456 (709)
                      ||. ++.+-|.++|+--.+  +|. .--+..+.-+...++-..|..+|++....++.||.  ..|..+|.-=++-|++..
T Consensus       412 ~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s  490 (656)
T KOG1914|consen  412 YCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS  490 (656)
T ss_pred             Hhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence            663 566667777764331  232 23344555556666666677777776666555553  356666666666666666


Q ss_pred             HHHHHHHHHHhhC--CCCChHHHHHHHHHHHhcCCHH
Q 039873          457 GFYYLNHLMKQIG--IVPGLEHYTCIVGLLSKAGLLD  491 (709)
Q Consensus       457 a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~  491 (709)
                      ..++-+.+...+.  ..+...+-..+++.|.-.+...
T Consensus       491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~  527 (656)
T KOG1914|consen  491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP  527 (656)
T ss_pred             HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence            6666555544333  3333334444555555444433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.35  E-value=1.7e-05  Score=83.78  Aligned_cols=219  Identities=13%  Similarity=0.056  Sum_probs=115.1

Q ss_pred             CCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHH
Q 039873          268 EPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSA  347 (709)
Q Consensus       268 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~  347 (709)
                      +|--..-..+...+.++|-..+|..+|+++     ..|...|-+|...|+..+|..+..+-.+  -+||...|..+....
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~  467 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL  467 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence            444445556677777788888888887775     4567777777777777777777766665  245555554444333


Q ss_pred             hccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 039873          348 AGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQ  427 (709)
Q Consensus       348 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  427 (709)
                      .+                                   ..-+++|.++++....+--..|+..   ..++++++++.+.|+
T Consensus       468 ~d-----------------------------------~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle  509 (777)
T KOG1128|consen  468 HD-----------------------------------PSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLE  509 (777)
T ss_pred             cC-----------------------------------hHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHH
Confidence            22                                   2233444444443321111111111   122455666666666


Q ss_pred             HHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-
Q 039873          428 NMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWD-  505 (709)
Q Consensus       428 ~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd-  505 (709)
                      .-.+  +.| -..||-....+..+.++++.+.+.|.....                                   ..|| 
T Consensus       510 ~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt-----------------------------------L~Pd~  552 (777)
T KOG1128|consen  510 RSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT-----------------------------------LEPDN  552 (777)
T ss_pred             HHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh-----------------------------------cCCCc
Confidence            5544  222 223555555555555555555555555432                                   2333 


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ...||++-.+|.++|+-.+|...+.++++.+-++...+-...-.-.+.|.|++|.+.+.++.+
T Consensus       553 ~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  553 AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            445555555555555555555555555554443434444444444555555555555555543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.34  E-value=3.9e-05  Score=74.81  Aligned_cols=180  Identities=13%  Similarity=0.010  Sum_probs=122.4

Q ss_pred             CChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CC-h---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----
Q 039873          370 EHLIVGNALINMYAKGGNIEAANKVFSDMRY--RD-I---ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV----  439 (709)
Q Consensus       370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----  439 (709)
                      .....+..+...|.+.|++++|...|+++..  |+ .   ..|..+...|.+.|++++|+..|+++.+.  .|+..    
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~  108 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY  108 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence            3455667777788888999999998887753  32 1   36677788888889999999999988874  34322    


Q ss_pred             HHHHHHHHHhcc--------ccHHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 039873          440 TFVGVLSACGHL--------GLVQEGFYYLNHLMKQIGIVPGL-EHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWH  510 (709)
Q Consensus       440 t~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~  510 (709)
                      ++..+..++...        |+.++|.+.++.+.+.   .|+. ..+..+...    +......           .....
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~  170 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKEL  170 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHH
Confidence            344444455443        6788888888887654   3332 122221111    1111100           00112


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHhcCCCC---chhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          511 TLLNASRVHQNYGFGRRIAEYILHMDPND---VGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       511 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      .+...+...|+++.|...++++++..|++   +..+..++.+|.+.|++++|..+++.+..+
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45556788999999999999999987654   468899999999999999999999888654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.32  E-value=6.6e-05  Score=77.53  Aligned_cols=215  Identities=17%  Similarity=0.119  Sum_probs=160.9

Q ss_pred             hcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHH
Q 039873          247 ASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALN  323 (709)
Q Consensus       247 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~  323 (709)
                      .+.|++.+|.-.|+..++.. +-+...|--|.......++-..|+..+.+..+   .|....-+|.-.|...|.-.+|++
T Consensus       296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            46678888888888888875 56778888888888888887788877777654   466777888888999999999999


Q ss_pred             HHHHHHhCCCC--------CCccchHHHHHHHhccCChhHHHHHHHH-HHHhCCCCChhHHhHHHhHHHhcCCHHHHHHH
Q 039873          324 LFCGMEYEAIR--------PNEFTFAVMLNSAAGLSALRHGDLLHAH-IEKSGFKEHLIVGNALINMYAKGGNIEAANKV  394 (709)
Q Consensus       324 ~~~~m~~~g~~--------pd~~t~~~ll~~~~~~~~~~~a~~i~~~-~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~  394 (709)
                      .|+.-+....+        ++..+-..  ........+....++|-. ....+..+|..+...|.-.|--.|++++|.+.
T Consensus       375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc  452 (579)
T KOG1125|consen  375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC  452 (579)
T ss_pred             HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence            99888654210        01110000  111222233444444444 44556568888999999999999999999999


Q ss_pred             HhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873          395 FSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLNHLMK  466 (709)
Q Consensus       395 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~  466 (709)
                      |+....   .|...||-|...++...+.++|++.|++.++  ++|+-+ ....|.-+|.+.|.+++|...|-.++.
T Consensus       453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            998763   3778999999999999999999999999999  789855 444566689999999999988876543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.31  E-value=3.6e-05  Score=72.17  Aligned_cols=118  Identities=11%  Similarity=0.063  Sum_probs=92.4

Q ss_pred             cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH-HhcCC--chHH
Q 039873          451 LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNAS-RVHQN--YGFG  525 (709)
Q Consensus       451 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~-~~~g~--~~~a  525 (709)
                      .++.+++...++...+  .-+.+...|..|...|...|++++|...|++. .+.|+ ...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            5566677767766654  23455678888888888888888888888743 34554 77777777763 66676  5899


Q ss_pred             HHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873          526 RRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK  570 (709)
Q Consensus       526 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  570 (709)
                      .++++++++.+|+++.++..++..+.+.|++++|...++++.+..
T Consensus       130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999997643

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.30  E-value=0.001  Score=64.38  Aligned_cols=306  Identities=15%  Similarity=0.104  Sum_probs=165.3

Q ss_pred             HHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHH---HHHhcCCCcHHHHHHHHHHHHcCCCCchHH-HHHHHHHH
Q 039873          206 SVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAF---GLSASLKDLKLGLQVHSQMLKSDIEPDVFI-NSAMISMY  281 (709)
Q Consensus       206 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y  281 (709)
                      -+-..+...|++..|+.-|...++.    |+..|..+.   ..|...|.-..|.+-+..+++.  .||-.. .---...+
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence            4777888899999999999988763    444454444   3566777777787777777765  555322 12233456


Q ss_pred             HhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHH
Q 039873          282 GKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHA  361 (709)
Q Consensus       282 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~  361 (709)
                      .|.|.++.|..-|+.+.+.+.. -+....++.+.-..++-..+                ...+..+...|+...+.....
T Consensus       117 lK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~~ai~~i~  179 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQNAIEMIT  179 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchhhHHHHHH
Confidence            7888888888888887653321 00111111111111111111                122223344555566666666


Q ss_pred             HHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 039873          362 HIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNH  438 (709)
Q Consensus       362 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~  438 (709)
                      .+++.. +.|...+..-..+|...|++..|..-++...   ..|....--+-..+..-|+.+.++...++-.+  +.||.
T Consensus       180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH  256 (504)
T KOG0624|consen  180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH  256 (504)
T ss_pred             HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence            665543 4455566666677777777777765554433   34555555566666677777777777666665  56664


Q ss_pred             HHHHHH---H----------HHHhccccHHHHHHHHHHHHHhhCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHh-
Q 039873          439 VTFVGV---L----------SACGHLGLVQEGFYYLNHLMKQIGIVPG-----LEHYTCIVGLLSKAGLLDEAEKFMRS-  499 (709)
Q Consensus       439 ~t~~~l---l----------~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~-  499 (709)
                      ...-..   +          ......+.|.++.+..+..++.   .|.     ...+..+-..|...|++.+|+....+ 
T Consensus       257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev  333 (504)
T KOG0624|consen  257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV  333 (504)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence            421110   0          0112234444444444444332   222     11233344455555666666655432 


Q ss_pred             CCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873          500 TPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV  540 (709)
Q Consensus       500 ~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  540 (709)
                      +.+.|| +.++.--..+|.....++.|+.-|+++.+.+++|.
T Consensus       334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~  375 (504)
T KOG0624|consen  334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT  375 (504)
T ss_pred             HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence            233344 44444445555555566666666666666665553

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=0.00081  Score=69.12  Aligned_cols=166  Identities=16%  Similarity=0.040  Sum_probs=104.7

Q ss_pred             HHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHH
Q 039873          378 LINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQE  456 (709)
Q Consensus       378 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~  456 (709)
                      +..+|.+.++.+.|...|.+...+-..     -....+....++++...+...-  +.|+.. -.-.-...+.+.|++..
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~  376 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE  376 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence            445677778888888888775421100     1112233344555555555444  344432 12222556778899999


Q ss_pred             HHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 039873          457 GFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILH  534 (709)
Q Consensus       457 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  534 (709)
                      |...+.++++.  .+-|...|+...-+|.+.|.+.+|++=.+.. .+.|+ .-.|.-=..++....+++.|.+.|.+.++
T Consensus       377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998764  2456778888889999999998888765432 23444 33333333455556789999999999999


Q ss_pred             cCCCCchhHHHHHHHhhh
Q 039873          535 MDPNDVGTYILLSNMYAK  552 (709)
Q Consensus       535 ~~p~~~~~~~~l~~~~~~  552 (709)
                      .+|++...-..+...+..
T Consensus       455 ~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  455 LDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             cCchhHHHHHHHHHHHHH
Confidence            999886655555554443

>PLN02789 farnesyltranstransferase

Probab=98.29  E-value=0.00022  Score=71.85  Aligned_cols=175  Identities=13%  Similarity=0.086  Sum_probs=110.4

Q ss_pred             HhHHHhHHHhcC-CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 039873          375 GNALINMYAKGG-NIEAANKVFSDMRY---RDIITWNAMICGYSHHGLG--REALTLFQNMLAAEERP-NHVTFVGVLSA  447 (709)
Q Consensus       375 ~~~li~~y~~~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-d~~t~~~ll~a  447 (709)
                      ++..-.++.+.| ++++++..++++.+   ++..+|+-....+.+.|+.  ++++++++++.+  ..| |..+|.....+
T Consensus        74 W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~  151 (320)
T PLN02789         74 WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWV  151 (320)
T ss_pred             HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHH
Confidence            333333344444 45666666666542   3445566554445555542  566777777776  344 45577777777


Q ss_pred             HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc---CCH----HHHHHHH-HhCCCCCC-HHHHHHHHHHHHh
Q 039873          448 CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA---GLL----DEAEKFM-RSTPVKWD-VVAWHTLLNASRV  518 (709)
Q Consensus       448 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~-~~~~~~pd-~~~~~~ll~~~~~  518 (709)
                      +.+.|+++++++.++.+++.  -.-+...|+....++.+.   |..    +++.++. +.+...|+ ...|+-+...+..
T Consensus       152 l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~  229 (320)
T PLN02789        152 LRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD  229 (320)
T ss_pred             HHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence            77777788888888777663  123344555554444443   222    3455554 34444554 8889888888877


Q ss_pred             c----CCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhc
Q 039873          519 H----QNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKE  553 (709)
Q Consensus       519 ~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  553 (709)
                      .    ++..+|...+.++.+.+|.++.....|+++|+..
T Consensus       230 ~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        230 DKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             CCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence            4    3456788899998888999988999999999864

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.27  E-value=2.3e-05  Score=69.37  Aligned_cols=122  Identities=11%  Similarity=0.008  Sum_probs=77.2

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 039873          424 TLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PV  502 (709)
Q Consensus       424 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~  502 (709)
                      .+|++..+  +.|+.  +.....++...|++++|...|+.....  -+.+...|..+..++.+.|++++|...|+.. ..
T Consensus        14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34444444  34543  334455566677777777777766431  2224556666777777777777777776643 23


Q ss_pred             CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhh
Q 039873          503 KW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYA  551 (709)
Q Consensus       503 ~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  551 (709)
                      .| +...|..+..++...|+.++|+..+++++++.|+++..+....++..
T Consensus        88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            34 46677777777777788888888888888888877777766655543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.27  E-value=0.00094  Score=73.31  Aligned_cols=174  Identities=11%  Similarity=0.002  Sum_probs=117.3

Q ss_pred             HHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 039873          389 EAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLM  465 (709)
Q Consensus       389 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~  465 (709)
                      ..|...+.+..   ..+...||+|.-. ...|.+.-|.-.|-+-... .+-+..+|..+.-.|....+++.|...|....
T Consensus       800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q  877 (1238)
T KOG1127|consen  800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ  877 (1238)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence            35666666544   3577788877655 5557777777777665553 23456677777777888889999999988763


Q ss_pred             HhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHh-----C--CCCCCHHHHHHHHHHHHhcCCchHHHH----------
Q 039873          466 KQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRS-----T--PVKWDVVAWHTLLNASRVHQNYGFGRR----------  527 (709)
Q Consensus       466 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-----~--~~~pd~~~~~~ll~~~~~~g~~~~a~~----------  527 (709)
                         .+.|+ ...|-...-..-..|+.-++..+|..     +  +--|+...|-.-..-...+|+.+.-+.          
T Consensus       878 ---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~  954 (1238)
T KOG1127|consen  878 ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL  954 (1238)
T ss_pred             ---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence               44554 44454444445567877788777653     1  223566666655555566666655444          


Q ss_pred             HHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873          528 IAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK  567 (709)
Q Consensus       528 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  567 (709)
                      ..++.+...|+...+|.+.+....+.+.+.+|.+...+..
T Consensus       955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli  994 (1238)
T KOG1127|consen  955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI  994 (1238)
T ss_pred             HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4445555679999999999999999999999988877754

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.25  E-value=3.7e-05  Score=81.34  Aligned_cols=189  Identities=14%  Similarity=0.143  Sum_probs=160.2

Q ss_pred             CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039873          367 GFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLS  446 (709)
Q Consensus       367 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~  446 (709)
                      +++|-...-..+...+.++|-...|..+|+++.     .|.-.|.+|...|+..+|.++..+-.+  -+||..-|..+.+
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD  465 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD  465 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence            456666777888999999999999999999864     788899999999999999999988877  4899999999999


Q ss_pred             HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHhcCCchH
Q 039873          447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMR-STPVKWD-VVAWHTLLNASRVHQNYGF  524 (709)
Q Consensus       447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~pd-~~~~~~ll~~~~~~g~~~~  524 (709)
                      ..-...-+++|.++++....+        .-..+.....+.++++++.+.++ ++.+.|- ..+|-.+..+..+.++++.
T Consensus       466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence            998888999999999886543        11122223345799999999987 4444553 7788888888889999999


Q ss_pred             HHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873          525 GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK  570 (709)
Q Consensus       525 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  570 (709)
                      |.+.|.....++|++...++.+.-+|.+.|+-.+|...+++..+-+
T Consensus       538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999998755

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.23  E-value=0.00024  Score=80.33  Aligned_cols=220  Identities=16%  Similarity=0.140  Sum_probs=168.4

Q ss_pred             CCCh-hhHHHHHHHHhcCCCcHHHHHHHHHHHHc-CCC---CchHHHHHHHHHHHhcCChHHHHHHHHhccCC-C-HhhH
Q 039873          233 RWDS-VTYVNAFGLSASLKDLKLGLQVHSQMLKS-DIE---PDVFINSAMISMYGKCGKFSNAKKVFEGLETR-N-VVLW  305 (709)
Q Consensus       233 ~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~-~~~~  305 (709)
                      .||. ..|..-+....+.++++.|+++.+++++. ++.   --..+|.+++++-..-|.-+...++|++..+- | ...|
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence            3553 45677777778888889999888888764 221   12457888888888888888899999998763 3 4568


Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCC-CCChhHHhHHHhHHHh
Q 039873          306 TAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGF-KEHLIVGNALINMYAK  384 (709)
Q Consensus       306 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~~y~~  384 (709)
                      ..|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+...-+.|..++.++.+.=- .-...+..-.+++-.+
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            88999999999999999999999864 234556788888888888888888989888877521 1245666777888899


Q ss_pred             cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcccc
Q 039873          385 GGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV--TFVGVLSACGHLGL  453 (709)
Q Consensus       385 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~~~g~  453 (709)
                      +|+.+.++.+|+....   +-...|+..|..-.++|+.+.+..+|++....++.|-..  .|.-.|.-=.+.|+
T Consensus      1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence            9999999999998763   356799999999999999999999999999988887533  44444443333343

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.18  E-value=0.00013  Score=71.19  Aligned_cols=179  Identities=14%  Similarity=0.019  Sum_probs=123.3

Q ss_pred             cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCC---hhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CC-hh---hHHH
Q 039873          338 FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEH---LIVGNALINMYAKGGNIEAANKVFSDMRY--RD-II---TWNA  408 (709)
Q Consensus       338 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~-~~---~~~~  408 (709)
                      ..+......+...|+++.|...+..+.+.. +.+   ...+..+...|.+.|++++|...|+++.+  |+ ..   ++..
T Consensus        34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  112 (235)
T TIGR03302        34 EELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence            456666777889999999999999998764 222   24667788999999999999999999863  32 22   4555


Q ss_pred             HHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHH
Q 039873          409 MICGYSHH--------GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCI  480 (709)
Q Consensus       409 li~~~~~~--------g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l  480 (709)
                      +..++.+.        |++++|.+.|+++...  .|+..-....+....   ...      ... .        .....+
T Consensus       113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~---~~~------~~~-~--------~~~~~~  172 (235)
T TIGR03302       113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD---YLR------NRL-A--------GKELYV  172 (235)
T ss_pred             HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH---HHH------HHH-H--------HHHHHH
Confidence            66666654        7889999999999884  565432211111110   000      000 0        012356


Q ss_pred             HHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 039873          481 VGLLSKAGLLDEAEKFMRST----PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDP  537 (709)
Q Consensus       481 i~~~~~~g~~~~A~~~~~~~----~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  537 (709)
                      .+.|.+.|++++|...++..    +-.|. ...|..+..++...|++++|...++.+....|
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            67788999999999887643    32332 56888889999999999999998888766554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.17  E-value=0.0019  Score=62.56  Aligned_cols=306  Identities=8%  Similarity=-0.014  Sum_probs=189.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHH---HHHHhCCCccHHHHHHHHHHhCCCCCChhhH-HHHHHHH
Q 039873          171 YVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVL---NGLIENECFRGGVEVLGKMVSGSVRWDSVTY-VNAFGLS  246 (709)
Q Consensus       171 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~  246 (709)
                      .-.--|-..+.-.|++.+|+.-|....+-|+..|-++.   ..|...|+..-|+.=|.+.++  .+||-..- ..-...+
T Consensus        39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence            33444566677789999999999999998998888875   578889999999999999887  47875422 2223345


Q ss_pred             hcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHH
Q 039873          247 ASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFC  326 (709)
Q Consensus       247 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~  326 (709)
                      .+.|.++.|..-|..+++..  |+..   ....++.+.-..++-..+            ...+..+..+|+...|++...
T Consensus       117 lK~Gele~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~  179 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMIT  179 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHH
Confidence            68999999999999999875  2111   111122222111111111            112333445566666666666


Q ss_pred             HHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CChh
Q 039873          327 GMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--RDII  404 (709)
Q Consensus       327 ~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~  404 (709)
                      .+++.. +-|...+..-..+|...|.+..|..=+..+.+.. ..++...--+-..+...|+.+.++...++..+  ||..
T Consensus       180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK  257 (504)
T KOG0624|consen  180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK  257 (504)
T ss_pred             HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence            665421 1233334444445555666665555444444433 22333444455556666776666666666553  2221


Q ss_pred             ----hHHHH---------HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHhccccHHHHHHHHHHHHHhh
Q 039873          405 ----TWNAM---------ICGYSHHGLGREALTLFQNMLAAEERPNHVTFV---GVLSACGHLGLVQEGFYYLNHLMKQI  468 (709)
Q Consensus       405 ----~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~  468 (709)
                          .|..+         +......+++.++++-.+...+.......++++   .+-..+...|.+.+|++.-.+..   
T Consensus       258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---  334 (504)
T KOG0624|consen  258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---  334 (504)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---
Confidence                11111         123456778888888888887743221233433   33445567789999998887764   


Q ss_pred             CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 039873          469 GIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRST  500 (709)
Q Consensus       469 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~  500 (709)
                      .+.|+ +.++.--.++|.-...+++|+.-|++.
T Consensus       335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A  367 (504)
T KOG0624|consen  335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA  367 (504)
T ss_pred             hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            56676 778888888999889999999888754

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.17  E-value=3.2e-06  Score=54.18  Aligned_cols=35  Identities=37%  Similarity=0.585  Sum_probs=32.5

Q ss_pred             hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 039873          404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNH  438 (709)
Q Consensus       404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~  438 (709)
                      ++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999983

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.13  E-value=4.1e-06  Score=53.70  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=32.6

Q ss_pred             hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCc
Q 039873          303 VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNE  337 (709)
Q Consensus       303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~  337 (709)
                      ++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999984

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.11  E-value=3e-05  Score=68.68  Aligned_cols=98  Identities=8%  Similarity=-0.159  Sum_probs=86.7

Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHH
Q 039873          470 IVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLS  547 (709)
Q Consensus       470 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  547 (709)
                      +.|+  .+..+...+...|++++|.+.|+.. ...| +...|..+...+...|++++|...++++++++|+++..+..++
T Consensus        22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg   99 (144)
T PRK15359         22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG   99 (144)
T ss_pred             cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            3455  4556788899999999999998854 3445 5888999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCchhHHHHHHHHHhC
Q 039873          548 NMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       548 ~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      .+|...|++++|...++...+.
T Consensus       100 ~~l~~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359        100 VCLKMMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999998764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.10  E-value=0.00036  Score=65.46  Aligned_cols=154  Identities=10%  Similarity=0.135  Sum_probs=111.8

Q ss_pred             HhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH
Q 039873          379 INMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGF  458 (709)
Q Consensus       379 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~  458 (709)
                      +-.|.+.|+++......+.+..+.        ..|...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~   93 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL   93 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            456788888777655443332221        01223566778888888877742 445668888888899999999999


Q ss_pred             HHHHHHHHhhCCCC-ChHHHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 039873          459 YYLNHLMKQIGIVP-GLEHYTCIVGL-LSKAGL--LDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYI  532 (709)
Q Consensus       459 ~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~  532 (709)
                      ..|+...+   +.| +...+..+..+ +.+.|+  .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus        94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a  170 (198)
T PRK10370         94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV  170 (198)
T ss_pred             HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99998865   334 56677788876 467777  58999998754 3445 4778888888999999999999999999


Q ss_pred             HhcCCCCchhHH
Q 039873          533 LHMDPNDVGTYI  544 (709)
Q Consensus       533 ~~~~p~~~~~~~  544 (709)
                      +++.|++..-+.
T Consensus       171 L~l~~~~~~r~~  182 (198)
T PRK10370        171 LDLNSPRVNRTQ  182 (198)
T ss_pred             HhhCCCCccHHH
Confidence            999988765543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.09  E-value=8e-05  Score=64.90  Aligned_cols=117  Identities=8%  Similarity=-0.000  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873          475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK  552 (709)
Q Consensus       475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  552 (709)
                      ...-.+...+...|++++|.++|+-. .+.| +..-|-.|...|...|++++|+..+.++..++|+++.++..++..|..
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            34445566677899999999998854 2344 478899999999999999999999999999999999999999999999


Q ss_pred             cCCchhHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHh
Q 039873          553 EKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIK  614 (709)
Q Consensus       553 ~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~  614 (709)
                      .|+.+.|++.|+......                       ..+|+..++.++.+...+.+.
T Consensus       116 lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~  154 (157)
T PRK15363        116 CDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS  154 (157)
T ss_pred             cCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence            999999999999887531                       135666666666666665554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.07  E-value=0.00033  Score=77.99  Aligned_cols=141  Identities=7%  Similarity=-0.011  Sum_probs=112.5

Q ss_pred             CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHH
Q 039873          401 RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYT  478 (709)
Q Consensus       401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~  478 (709)
                      .++..+-.|.....+.|++++|..+++...+  +.||.. ....+...+.+.+.+++|....+....   ..|+ ..+..
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~  158 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL  158 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence            3577888888888999999999999999988  688755 677778888999999999999888754   3444 56777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873          479 CIVGLLSKAGLLDEAEKFMRSTP-VKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL  546 (709)
Q Consensus       479 ~li~~~~~~g~~~~A~~~~~~~~-~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  546 (709)
                      .+..++.+.|++++|.++|++.- -.|| ..+|-++..++...|+.+.|...|+++++...+-...|..+
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~  228 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR  228 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence            88888999999999999998663 2344 77888888889999999999999999988765444555443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.97  E-value=1.4e-05  Score=50.81  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=29.3

Q ss_pred             hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 039873          404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERP  436 (709)
Q Consensus       404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  436 (709)
                      .+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            588999999999999999999999999988887

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.96  E-value=0.0019  Score=72.72  Aligned_cols=165  Identities=8%  Similarity=0.026  Sum_probs=85.1

Q ss_pred             hHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCC
Q 039873          238 TYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEY  317 (709)
Q Consensus       238 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~  317 (709)
                      .+..|+..+...+++++|.++.+..++.. +.....|-.+...|.+.++.+++..+             .++.......+
T Consensus        33 a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~   98 (906)
T PRK14720         33 ELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLK   98 (906)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccc
Confidence            45556666666666666666666544432 12222222222244455544443333             22233333333


Q ss_pred             HhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhh
Q 039873          318 FEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSD  397 (709)
Q Consensus       318 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~  397 (709)
                      +.-...+...|...  .-+...+..+..+|.+.|..+++..+++.+++.. +.|+.+.|.+...|+.. ++++|.+++.+
T Consensus        99 ~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K  174 (906)
T PRK14720         99 WAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK  174 (906)
T ss_pred             hhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence            32222233333331  1222355556666666666666666666666665 55666666666666666 66666666554


Q ss_pred             cCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873          398 MRYRDIITWNAMICGYSHHGLGREALTLFQNMLA  431 (709)
Q Consensus       398 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  431 (709)
                      ..           ..|...+++.++.++|.++..
T Consensus       175 AV-----------~~~i~~kq~~~~~e~W~k~~~  197 (906)
T PRK14720        175 AI-----------YRFIKKKQYVGIEEIWSKLVH  197 (906)
T ss_pred             HH-----------HHHHhhhcchHHHHHHHHHHh
Confidence            32           225555566666666666665

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.94  E-value=0.00059  Score=63.95  Aligned_cols=126  Identities=15%  Similarity=0.055  Sum_probs=89.7

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 039873          442 VGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST--PVKWDVVAWHTLLNASRVH  519 (709)
Q Consensus       442 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~pd~~~~~~ll~~~~~~  519 (709)
                      ..+-.++...|+-+....+......  ....|......++....+.|++.+|...|++.  +-.+|...|+.+..+|-+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence            4445556666666666666555322  33444556666777788888888888877754  2235677888888888888


Q ss_pred             CCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          520 QNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       520 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      |+.+.|...+.+++++.|.++..++.|+-.|.-.|+.++|..++......
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            88888888888888888888888888888888888888888887776643

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.92  E-value=0.0011  Score=73.78  Aligned_cols=143  Identities=8%  Similarity=0.024  Sum_probs=114.0

Q ss_pred             CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 039873          367 GFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFV  442 (709)
Q Consensus       367 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~  442 (709)
                      ....+...+-.|.....+.|..++|..+++...+  | +...+..++..+.+.+++++|+..+++...  ..|+.. ...
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~  158 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL  158 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence            3456688888999999999999999999998873  5 456788899999999999999999999998  567765 455


Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 039873          443 GVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP--VKWDVVAWHTLL  513 (709)
Q Consensus       443 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~pd~~~~~~ll  513 (709)
                      .+..++.+.|.+++|..+|+++..  ...-+...+..+...+-+.|+.++|...|++.-  ..|..--|+.++
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~  229 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL  229 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence            566678899999999999999876  223336788899999999999999999988641  223444444443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.92  E-value=1.4e-05  Score=50.72  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=29.3

Q ss_pred             cccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCC
Q 039873          201 VFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRW  234 (709)
Q Consensus       201 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  234 (709)
                      +.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3578889999999999999999999998888887

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.90  E-value=0.00098  Score=62.53  Aligned_cols=155  Identities=15%  Similarity=0.064  Sum_probs=92.7

Q ss_pred             hHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 039873          376 NALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLG  452 (709)
Q Consensus       376 ~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g  452 (709)
                      ..+-..|.-.|+-+.+..+.....   ..|....+..+....+.|++.+|+..|++.... -++|..+++.+.-+|.+.|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence            445555555666666666665543   234445555666777777777777777777663 2445667777777777777


Q ss_pred             cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 039873          453 LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPV--KWDVVAWHTLLNASRVHQNYGFGRRIAE  530 (709)
Q Consensus       453 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~pd~~~~~~ll~~~~~~g~~~~a~~~~~  530 (709)
                      +.++|..-|.+..+-.+-+|  ..++.|.-.|.-.|+++.|..++...-.  ..|..+-..|.-.....|+++.|+.+..
T Consensus       149 r~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         149 RFDEARRAYRQALELAPNEP--SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             ChhHHHHHHHHHHHhccCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            77777777766654322222  3556666666666667766666553311  1245555566666666666666666655


Q ss_pred             HHH
Q 039873          531 YIL  533 (709)
Q Consensus       531 ~~~  533 (709)
                      +-.
T Consensus       227 ~e~  229 (257)
T COG5010         227 QEL  229 (257)
T ss_pred             ccc
Confidence            433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.84  E-value=0.00059  Score=70.24  Aligned_cols=126  Identities=13%  Similarity=0.104  Sum_probs=101.4

Q ss_pred             HHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccc
Q 039873          374 VGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLG  452 (709)
Q Consensus       374 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g  452 (709)
                      ...+|+..+...++++.|..+|+++.+.++..+..|+..+...++..+|++++++....  .| |...+..-...|.+.+
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence            34456666777889999999999998877777777888888889999999999999874  44 4445555556688899


Q ss_pred             cHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 039873          453 LVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRSTPVKW  504 (709)
Q Consensus       453 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p  504 (709)
                      +++.|..+.+++.+   ..|+ ..+|..|+..|.+.|++++|+-.++.+|+.|
T Consensus       249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~  298 (395)
T PF09295_consen  249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT  298 (395)
T ss_pred             CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence            99999999998864   3555 5589999999999999999999999988654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.82  E-value=0.087  Score=58.04  Aligned_cols=67  Identities=16%  Similarity=0.245  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhcCCc---hHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCccC
Q 039873          508 AWHTLLNASRVHQNY---GFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKE  574 (709)
Q Consensus       508 ~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  574 (709)
                      +.+.|+..|++.++.   -+|+-+++..+...|.|..+-..|+.+|.-.|-...|.++++.+.-+.+..+
T Consensus       438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D  507 (932)
T KOG2053|consen  438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD  507 (932)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence            446777888888765   4566677777788898888888999999999999999999998876666544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.82  E-value=0.00022  Score=62.57  Aligned_cols=95  Identities=17%  Similarity=0.137  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873          475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK  552 (709)
Q Consensus       475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  552 (709)
                      .....+...+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|..
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            44556667777778888887777653 2234 467777777788888888888888888888888888888888888888


Q ss_pred             cCCchhHHHHHHHHHhC
Q 039873          553 EKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       553 ~g~~~~a~~~~~~m~~~  569 (709)
                      .|++++|.+.++...+.
T Consensus        98 ~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        98 LGEPESALKALDLAIEI  114 (135)
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            88888888888877653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.80  E-value=0.0086  Score=67.70  Aligned_cols=218  Identities=10%  Similarity=0.035  Sum_probs=107.9

Q ss_pred             CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHH-HHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHH
Q 039873          200 DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYV-NAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMI  278 (709)
Q Consensus       200 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  278 (709)
                      +...|..|+..|...+++++|.++.+...+.  .|+...+- .+...+.+.++...+..+                 .++
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l   90 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI   90 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence            4445666677776677777777776654442  34433221 111133333333333222                 222


Q ss_pred             HHHHhcCChHHHHHHHHhccC--CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHH
Q 039873          279 SMYGKCGKFSNAKKVFEGLET--RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHG  356 (709)
Q Consensus       279 ~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a  356 (709)
                      +...+..++.-...+...|..  .+..++-.+..+|-+.|+.++|...++++.+.. +-|....+.+...++.. +++.|
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence            222222333222222223322  123355556666667777777777777766654 23445555666666666 66666


Q ss_pred             HHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCC
Q 039873          357 DLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAA-EER  435 (709)
Q Consensus       357 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~  435 (709)
                      +++...++..               |....++..+.+++.++..-++.-             ++.-+.+.+.+..+ |..
T Consensus       169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d-------------~d~f~~i~~ki~~~~~~~  220 (906)
T PRK14720        169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDD-------------FDFFLRIERKVLGHREFT  220 (906)
T ss_pred             HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCccc-------------chHHHHHHHHHHhhhccc
Confidence            6666665543               455556666666666655433221             12222223333222 222


Q ss_pred             CCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873          436 PNHVTFVGVLSACGHLGLVQEGFYYLNHLMK  466 (709)
Q Consensus       436 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  466 (709)
                      --..++..+-..|....+++++..+++.+.+
T Consensus       221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~  251 (906)
T PRK14720        221 RLVGLLEDLYEPYKALEDWDEVIYILKKILE  251 (906)
T ss_pred             hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence            2233444445555666666777777666643

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.80  E-value=0.0024  Score=65.17  Aligned_cols=144  Identities=17%  Similarity=0.090  Sum_probs=88.2

Q ss_pred             hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHH
Q 039873          404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGV-LSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIV  481 (709)
Q Consensus       404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li  481 (709)
                      ..+--..-.+...|++++|+..++.+...  .||...|..+ ...+...++.++|.+.++.++.   ..|+ ....-.+.
T Consensus       307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a  381 (484)
T COG4783         307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA  381 (484)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence            34444444555667777777777776663  5554444433 3456667777777777777654   3444 34455666


Q ss_pred             HHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhH
Q 039873          482 GLLSKAGLLDEAEKFMRST--PVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGV  559 (709)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  559 (709)
                      ++|.+.|++++|..+++..  ..+-|+..|..|..+|...|+..++...                 ....|.-.|+|++|
T Consensus       382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A  444 (484)
T COG4783         382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA  444 (484)
T ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence            7777777777777776543  2223467777777777777765555433                 33455666777777


Q ss_pred             HHHHHHHHhC
Q 039873          560 SKIRKLMKVR  569 (709)
Q Consensus       560 ~~~~~~m~~~  569 (709)
                      ....+...++
T Consensus       445 ~~~l~~A~~~  454 (484)
T COG4783         445 IIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHHHh
Confidence            7777776654

>PLN02789 farnesyltranstransferase

Probab=97.79  E-value=0.004  Score=62.90  Aligned_cols=184  Identities=10%  Similarity=0.092  Sum_probs=130.5

Q ss_pred             hHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcccc-
Q 039873          380 NMYAKGGNIEAANKVFSDMRYR---DIITWNAMICGYSHHG-LGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGL-  453 (709)
Q Consensus       380 ~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~-  453 (709)
                      ..+.+.+..++|+.+.+++.+.   +..+|+.--..+...| .+++++..++++.+.  .|+ ..+|..-...+.+.|. 
T Consensus        45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~  122 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD  122 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence            3445567888999998887643   4457776666677777 579999999999985  443 3456655444555565 


Q ss_pred             -HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CCc----h
Q 039873          454 -VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVK-WDVVAWHTLLNASRVH---QNY----G  523 (709)
Q Consensus       454 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-pd~~~~~~ll~~~~~~---g~~----~  523 (709)
                       .+++..+++.+.+.  -+-+..+|+...-++.+.|++++|++.++++ ... .|..+|+.....+...   |..    +
T Consensus       123 ~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e  200 (320)
T PLN02789        123 AANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD  200 (320)
T ss_pred             hhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence             36778888777652  2345678888888899999999999998865 222 3577888776665544   222    4


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHhhhc----CCchhHHHHHHHHH
Q 039873          524 FGRRIAEYILHMDPNDVGTYILLSNMYAKE----KRWDGVSKIRKLMK  567 (709)
Q Consensus       524 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~  567 (709)
                      .+.+...++++++|+|.+++.-+..+|...    ++..+|.+......
T Consensus       201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~  248 (320)
T PLN02789        201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL  248 (320)
T ss_pred             HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence            677778899999999999999999999873    34455666665543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.79  E-value=0.0053  Score=62.77  Aligned_cols=119  Identities=18%  Similarity=0.055  Sum_probs=88.9

Q ss_pred             HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHH
Q 039873          448 CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFG  525 (709)
Q Consensus       448 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a  525 (709)
                      ....|.+++|+..+..+++.  .+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...|-++..++.+.|+..+|
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence            34567788888888877552  3334556667778888888888888887754 44566 66677777788888888888


Q ss_pred             HHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          526 RRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       526 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +.+++.....+|+|+..|..|+.+|..+|+..++...+.++..
T Consensus       394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888877776653

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.74  E-value=3.7e-05  Score=47.54  Aligned_cols=31  Identities=35%  Similarity=0.581  Sum_probs=26.4

Q ss_pred             hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 039873          404 ITWNAMICGYSHHGLGREALTLFQNMLAAEE  434 (709)
Q Consensus       404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  434 (709)
                      ++||+||++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4788889999999999999999999888774

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.72  E-value=0.00072  Score=69.60  Aligned_cols=119  Identities=13%  Similarity=0.072  Sum_probs=58.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcH
Q 039873          174 NALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLK  253 (709)
Q Consensus       174 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~  253 (709)
                      .+|+..+...++++.|..+|+++.+.++..+-.++..+...++..+|++++++..+.                       
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-----------------------  229 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-----------------------  229 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----------------------
Confidence            334444444555555555555555554444444555555555555555555555432                       


Q ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CHhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 039873          254 LGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET--R-NVVLWTAMVAACFQNEYFEEALNLFCGM  328 (709)
Q Consensus       254 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m  328 (709)
                                  . +.+..........+.+.++.+.|..+.+++.+  | +..+|..|..+|.+.|++++|+..++.+
T Consensus       230 ------------~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  230 ------------N-PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             ------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence                        1 22333444444444555555555555555443  2 2345555555555555555555555444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.71  E-value=4e-05  Score=47.40  Aligned_cols=31  Identities=26%  Similarity=0.483  Sum_probs=25.7

Q ss_pred             ccHHHHHHHHHhCCCccHHHHHHHHHHhCCC
Q 039873          202 FEYNSVLNGLIENECFRGGVEVLGKMVSGSV  232 (709)
Q Consensus       202 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  232 (709)
                      ++||+||++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4788888888888888888888888887764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=0.021  Score=53.88  Aligned_cols=144  Identities=13%  Similarity=-0.005  Sum_probs=78.9

Q ss_pred             HhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH
Q 039873          379 INMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGF  458 (709)
Q Consensus       379 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~  458 (709)
                      ...|.+.|++++|++.......-+....  =...+.+..+.+-|.+.+++|.+-   -+..|.+-|..++.         
T Consensus       115 a~i~~~~~~~deAl~~~~~~~~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv---------  180 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGENLEAAAL--NVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWV---------  180 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHH---------
Confidence            3456666666666666655322222222  222334444555566666666541   23334443433332         


Q ss_pred             HHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 039873          459 YYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP--VKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMD  536 (709)
Q Consensus       459 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  536 (709)
                                             ....-.+.+.+|.-+|+++.  ..|+..+.+-....+...|++++|+.+++.++..+
T Consensus       181 -----------------------~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd  237 (299)
T KOG3081|consen  181 -----------------------KLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD  237 (299)
T ss_pred             -----------------------HHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence                                   22222334455555555542  24556666666667777777777777777777777


Q ss_pred             CCCchhHHHHHHHhhhcCCchhH
Q 039873          537 PNDVGTYILLSNMYAKEKRWDGV  559 (709)
Q Consensus       537 p~~~~~~~~l~~~~~~~g~~~~a  559 (709)
                      +.++.+...++-.--..|+-.++
T Consensus       238 ~~dpetL~Nliv~a~~~Gkd~~~  260 (299)
T KOG3081|consen  238 AKDPETLANLIVLALHLGKDAEV  260 (299)
T ss_pred             CCCHHHHHHHHHHHHHhCCChHH
Confidence            77777777776666666766554

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.61  E-value=0.12  Score=53.67  Aligned_cols=211  Identities=10%  Similarity=0.057  Sum_probs=142.5

Q ss_pred             hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcC---CHHHHHHHHhhcCC----CChhhHHHHHHHHHHcCChHHHHHHH
Q 039873          354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGG---NIEAANKVFSDMRY----RDIITWNAMICGYSHHGLGREALTLF  426 (709)
Q Consensus       354 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~  426 (709)
                      +++..+++..+..-...+..+|..+.+.--..-   ..+.....+++...    .-..+|-..+..-.+..-.+.|..+|
T Consensus       310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF  389 (656)
T KOG1914|consen  310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF  389 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence            445555555554433334445544443211111   13344444444431    22346777788777888889999999


Q ss_pred             HHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC---C
Q 039873          427 QNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP---V  502 (709)
Q Consensus       427 ~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~  502 (709)
                      .+..+.+..+ +....++++.-++ +++.+-|..+|+.-++++|-.|-  --.+.++-+...++-..|+.+|++.-   +
T Consensus       390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~--yv~~YldfL~~lNdd~N~R~LFEr~l~s~l  466 (656)
T KOG1914|consen  390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPE--YVLKYLDFLSHLNDDNNARALFERVLTSVL  466 (656)
T ss_pred             HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChH--HHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence            9999998888 4556666666554 57899999999988776655443  55678889999999999999998652   2


Q ss_pred             CCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC----chhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873          503 KWD--VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND----VGTYILLSNMYAKEKRWDGVSKIRKLMK  567 (709)
Q Consensus       503 ~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~  567 (709)
                      .||  ...|..+|.--..-|++.....+-++....-|.+    ...-..+++.|.-.+.+..-..-++.|-
T Consensus       467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l~  537 (656)
T KOG1914|consen  467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFLG  537 (656)
T ss_pred             ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhhh
Confidence            344  6789999999899999999999988877654421    1234566778888887777666666664

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.56  E-value=0.12  Score=52.25  Aligned_cols=122  Identities=17%  Similarity=0.168  Sum_probs=89.7

Q ss_pred             hHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 039873          376 NALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQ  455 (709)
Q Consensus       376 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~  455 (709)
                      +..|.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-.++...      +-.++-|..++.+|...|...
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~  254 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK  254 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence            34455566788999999999888889999999999999999999877665432      223477888899999999999


Q ss_pred             HHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039873          456 EGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASR  517 (709)
Q Consensus       456 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~  517 (709)
                      +|..+...+           .+..-+.+|.++|++.+|.+.--+.   .|...+..+...|.
T Consensus       255 eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~~  302 (319)
T PF04840_consen  255 EASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRCP  302 (319)
T ss_pred             HHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHCC
Confidence            988777652           2356788899999999998774433   25555554444443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.56  E-value=0.0025  Score=55.77  Aligned_cols=113  Identities=6%  Similarity=-0.033  Sum_probs=80.7

Q ss_pred             HHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 039873          425 LFQNMLAAEERPNH-VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PV  502 (709)
Q Consensus       425 ~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~  502 (709)
                      .|++...  ..|+. .....+...+...|++++|.+.++.+...  .+.+...+..+...|.+.|++++|.+.++.. ..
T Consensus         5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552         5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455554  44543 34555666677788888888888877552  2335667778888888888888888877644 23


Q ss_pred             CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch
Q 039873          503 KW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG  541 (709)
Q Consensus       503 ~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  541 (709)
                      .| +...|..+...+...|+.+.|...++++++++|++..
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            34 4677777778888899999999999999999887754

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.55  E-value=0.22  Score=55.05  Aligned_cols=216  Identities=14%  Similarity=0.112  Sum_probs=141.7

Q ss_pred             CCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHH--HccCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChh
Q 039873           42 DSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLY--AKCNQISIARQLFDNMRQ---RNVVSYSSLMTWYLHNGFLL  116 (709)
Q Consensus        42 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~--~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~  116 (709)
                      ..+.+..|.+....+.+..+     |. .|...+.++  .+.|+.++|..+++....   .|..|...+-..|...+..+
T Consensus        21 d~~qfkkal~~~~kllkk~P-----n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHP-----NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCC-----Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence            45677788888888777643     22 233344443  478999999988887653   47778888899999999999


Q ss_pred             HHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----------Ch
Q 039873          117 ETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCL----------DV  186 (709)
Q Consensus       117 ~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----------~~  186 (709)
                      +|..+|+...   +..|+......++.++.+.+++.+-.++--++-+. ++...+.+=+.++.+.+.-          -+
T Consensus        95 ~~~~~Ye~~~---~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l  170 (932)
T KOG2053|consen   95 EAVHLYERAN---QKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL  170 (932)
T ss_pred             HHHHHHHHHH---hhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence            9999999876   46788888888899999888877655554444443 3344454444555554321          12


Q ss_pred             HHHHHHHhhCCCCC-c-cc---HHHHHHHHHhCCCccHHHHHH-HHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHH
Q 039873          187 EMAKRLLDLLPGYD-V-FE---YNSVLNGLIENECFRGGVEVL-GKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHS  260 (709)
Q Consensus       187 ~~A~~~f~~~~~~~-~-~~---~~~li~~~~~~g~~~~A~~l~-~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  260 (709)
                      .-|.+.++.+.+.+ . .+   .-.-...+-..|++++|++++ ....+.-...+...-+--+..+...+++.+..++-.
T Consensus       171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~  250 (932)
T KOG2053|consen  171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS  250 (932)
T ss_pred             HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence            34666666665544 1 11   111123344578889999888 444443333344444566677778888888888888


Q ss_pred             HHHHcCC
Q 039873          261 QMLKSDI  267 (709)
Q Consensus       261 ~~~~~g~  267 (709)
                      .++..|.
T Consensus       251 ~Ll~k~~  257 (932)
T KOG2053|consen  251 RLLEKGN  257 (932)
T ss_pred             HHHHhCC
Confidence            8888763

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.50  E-value=0.00027  Score=53.57  Aligned_cols=64  Identities=19%  Similarity=0.200  Sum_probs=59.0

Q ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC-CchhHHHHHHHHHh
Q 039873          505 DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK-RWDGVSKIRKLMKV  568 (709)
Q Consensus       505 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~  568 (709)
                      ++.+|..+...+...|++++|+..|+++++++|+++..|..++.+|...| ++++|.+.+++..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            56788899999999999999999999999999999999999999999999 79999999988765

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.47  E-value=0.0036  Score=55.57  Aligned_cols=84  Identities=15%  Similarity=0.082  Sum_probs=39.6

Q ss_pred             HHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCC
Q 039873          481 VGLLSKAGLLDEAEKFMRSTPV-KWDV----VAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKR  555 (709)
Q Consensus       481 i~~~~~~g~~~~A~~~~~~~~~-~pd~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  555 (709)
                      ...+...|++++|.+.|+...- .||.    ...-.|...+...|++++|+..++.. .-.+..+..+..++++|.+.|+
T Consensus        55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~  133 (145)
T PF09976_consen   55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGD  133 (145)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC
Confidence            3444445555555555443211 1221    12223334445555555555555442 1122233455566666666666


Q ss_pred             chhHHHHHHH
Q 039873          556 WDGVSKIRKL  565 (709)
Q Consensus       556 ~~~a~~~~~~  565 (709)
                      +++|+..|+.
T Consensus       134 ~~~A~~~y~~  143 (145)
T PF09976_consen  134 YDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHHH
Confidence            6666666654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.47  E-value=0.0012  Score=53.09  Aligned_cols=92  Identities=21%  Similarity=0.179  Sum_probs=72.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC
Q 039873          477 YTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK  554 (709)
Q Consensus       477 ~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  554 (709)
                      +..+...+...|++++|.+.++.. ...|+ ...|..+...+...++++.|.+.++...+..|.+...+..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            455667777788888888887753 23343 4667777778888899999999999999888888888888999999999


Q ss_pred             CchhHHHHHHHHHh
Q 039873          555 RWDGVSKIRKLMKV  568 (709)
Q Consensus       555 ~~~~a~~~~~~m~~  568 (709)
                      ++++|...++...+
T Consensus        83 ~~~~a~~~~~~~~~   96 (100)
T cd00189          83 KYEEALEAYEKALE   96 (100)
T ss_pred             hHHHHHHHHHHHHc
Confidence            99999988887764

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.36  E-value=0.12  Score=51.40  Aligned_cols=240  Identities=15%  Similarity=0.106  Sum_probs=148.1

Q ss_pred             cCCHhHHHHHHHHHHhCCCCCCc--cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHH
Q 039873          315 NEYFEEALNLFCGMEYEAIRPNE--FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAAN  392 (709)
Q Consensus       315 ~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~  392 (709)
                      .|++++|.+-|+.|...   |..  .-+..+.-...+.|+.+.++++-+..-..- +.-.-...+.+...+..|+++.|+
T Consensus       133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al  208 (531)
T COG3898         133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL  208 (531)
T ss_pred             cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence            35555555555555431   111  112222223345566666666655554432 222345566777778888888888


Q ss_pred             HHHhhcC-----CCChh--hHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHH
Q 039873          393 KVFSDMR-----YRDII--TWNAMICGYS---HHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYL  461 (709)
Q Consensus       393 ~~f~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~  461 (709)
                      ++.+.-.     ++|+.  .--.|+.+-+   -..+...|...-.+..+  +.||-+ .-.....++.+.|++.++-.++
T Consensus       209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il  286 (531)
T COG3898         209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL  286 (531)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence            8877544     34432  2222332221   12345666666666555  678755 3344456788999999999999


Q ss_pred             HHHHHhhCCCCChHHHHHHHHHHHhcCCHHHH--HHH--HHhCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 039873          462 NHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEA--EKF--MRSTPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMD  536 (709)
Q Consensus       462 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~~~--~~~~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  536 (709)
                      +.+   +...|....+...+  +.|.|+....  ...  +.+|  +|| ..+.-++..+-...|++..|..-.+.+....
T Consensus       287 E~a---WK~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~  359 (531)
T COG3898         287 ETA---WKAEPHPDIALLYV--RARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA  359 (531)
T ss_pred             HHH---HhcCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence            988   45577766554433  4556653222  222  3444  454 6666677778888999999999999999999


Q ss_pred             CCCchhHHHHHHHhhhc-CCchhHHHHHHHHHh
Q 039873          537 PNDVGTYILLSNMYAKE-KRWDGVSKIRKLMKV  568 (709)
Q Consensus       537 p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~  568 (709)
                      |.. +.|..|.++-... |+-.+++...-+...
T Consensus       360 pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         360 PRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             chh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            865 6899999987654 998888888776654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.36  E-value=0.054  Score=51.16  Aligned_cols=111  Identities=16%  Similarity=0.168  Sum_probs=70.9

Q ss_pred             HhHHHhcCCHHHHHHHHhhcCCCC-hhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 039873          379 INMYAKGGNIEAANKVFSDMRYRD-IITWNAMICGYSH----HGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGL  453 (709)
Q Consensus       379 i~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~  453 (709)
                      +..+.|..+++-|.+.+++|.+-| -.+.+.|..++.+    .++..+|.-+|++|-+. ..|+..+.+....+|...|+
T Consensus       144 VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~  222 (299)
T KOG3081|consen  144 VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence            334555667777777777777543 3344445444433    34577888888888764 67888888888888888888


Q ss_pred             HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHH
Q 039873          454 VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDE  492 (709)
Q Consensus       454 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  492 (709)
                      +++|..+++....+.  ..+..+...+|-.-...|...+
T Consensus       223 ~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~  259 (299)
T KOG3081|consen  223 YEEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAE  259 (299)
T ss_pred             HHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChH
Confidence            888888888876642  2233344444444444444433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.04  Score=51.66  Aligned_cols=161  Identities=15%  Similarity=0.155  Sum_probs=109.1

Q ss_pred             HHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 039873          377 ALINMYAKGGNIEAANKVFSDMRYRDIITWNAM---ICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGL  453 (709)
Q Consensus       377 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~  453 (709)
                      -++-+...+|+.+.|..+++.+..+=+.++...   ..-+-..|++++|+++++...+.. +.|.+++..=+...-..|.
T Consensus        57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK  135 (289)
T KOG3060|consen   57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK  135 (289)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence            334444556777777777776653212222211   122455788899999999988865 4466677666656666677


Q ss_pred             HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHh---cCCchHHHHH
Q 039873          454 VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP-VKWD-VVAWHTLLNASRV---HQNYGFGRRI  528 (709)
Q Consensus       454 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~pd-~~~~~~ll~~~~~---~g~~~~a~~~  528 (709)
                      --+|++-+....+  .+..|.+.|.-+.++|...|++++|.=.++++- +.|- +..+..+...+..   ..|.+.+...
T Consensus       136 ~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky  213 (289)
T KOG3060|consen  136 NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY  213 (289)
T ss_pred             cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            7788887777766  467788899999999999999999988877652 3454 4444445444332   3478899999


Q ss_pred             HHHHHhcCCCCc
Q 039873          529 AEYILHMDPNDV  540 (709)
Q Consensus       529 ~~~~~~~~p~~~  540 (709)
                      +++.+++.|.+.
T Consensus       214 y~~alkl~~~~~  225 (289)
T KOG3060|consen  214 YERALKLNPKNL  225 (289)
T ss_pred             HHHHHHhChHhH
Confidence            999999988553

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.32  E-value=0.0043  Score=52.75  Aligned_cols=96  Identities=8%  Similarity=-0.051  Sum_probs=43.5

Q ss_pred             HHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc
Q 039873          446 SACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVH  519 (709)
Q Consensus       446 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~  519 (709)
                      ..+...|++++|...|..+.+..+-.+ ....+..+..++.+.|++++|.+.++.. ...|+    ..++..+...+...
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~   89 (119)
T TIGR02795        10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL   89 (119)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh
Confidence            333444444444444444433211111 0122333444444455555554444432 11122    33445555555566


Q ss_pred             CCchHHHHHHHHHHhcCCCCch
Q 039873          520 QNYGFGRRIAEYILHMDPNDVG  541 (709)
Q Consensus       520 g~~~~a~~~~~~~~~~~p~~~~  541 (709)
                      |+.+.|...++++++..|++..
T Consensus        90 ~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        90 GDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             CChHHHHHHHHHHHHHCcCChh
Confidence            6666666666666666665543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.32  E-value=0.0029  Score=65.46  Aligned_cols=92  Identities=13%  Similarity=-0.043  Sum_probs=40.9

Q ss_pred             HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHH
Q 039873          448 CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFG  525 (709)
Q Consensus       448 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a  525 (709)
                      ....|++++|...|..+++.  .+.+...|..+..+|.+.|++++|+..+++. .+.|+ ...|..+..+|...|+++.|
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence            33445555555555554432  1112334444444444555555555444322 22232 33444444444444555555


Q ss_pred             HHHHHHHHhcCCCCch
Q 039873          526 RRIAEYILHMDPNDVG  541 (709)
Q Consensus       526 ~~~~~~~~~~~p~~~~  541 (709)
                      +..++++++++|++..
T Consensus        90 ~~~~~~al~l~P~~~~  105 (356)
T PLN03088         90 KAALEKGASLAPGDSR  105 (356)
T ss_pred             HHHHHHHHHhCCCCHH
Confidence            5555555555544433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.32  E-value=0.00026  Score=56.08  Aligned_cols=59  Identities=15%  Similarity=0.150  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHH
Q 039873          506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKL  565 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  565 (709)
                      ...|-.+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.+++++
T Consensus        25 ~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   25 SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            33444455555555555555555555 444444445555556666666666666666653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.30  E-value=0.0029  Score=53.81  Aligned_cols=96  Identities=15%  Similarity=0.003  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC---chhHHHH
Q 039873          475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND---VGTYILL  546 (709)
Q Consensus       475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l  546 (709)
                      ..+-.++..+.+.|++++|.+.++.. ...|+    ...+..+...+...|+++.|...++.++...|++   +..+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            35667788899999999999998765 22343    3456668888999999999999999999988775   4578899


Q ss_pred             HHHhhhcCCchhHHHHHHHHHhCC
Q 039873          547 SNMYAKEKRWDGVSKIRKLMKVRK  570 (709)
Q Consensus       547 ~~~~~~~g~~~~a~~~~~~m~~~~  570 (709)
                      +.+|.+.|++++|.+.++++.+..
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHC
Confidence            999999999999999999998754

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.30  E-value=0.00063  Score=50.76  Aligned_cols=58  Identities=19%  Similarity=0.201  Sum_probs=46.8

Q ss_pred             HHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          512 LLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       512 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      +...+...|++++|+..++++++..|+++..+..++.++...|++++|...++++.+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456677888888888888888888888888888888888888888888888887653

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.27  E-value=0.013  Score=63.48  Aligned_cols=62  Identities=10%  Similarity=0.025  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +..+.++.-.....|++++|...++++++++| +...|..++..|...|+.++|.+.+++...
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34455554444455666666666666666666 345666666666666666666666666554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.26  E-value=0.013  Score=52.08  Aligned_cols=123  Identities=15%  Similarity=0.139  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh--HHHHH
Q 039873          406 WNAMICGYSHHGLGREALTLFQNMLAAEERPNH----VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL--EHYTC  479 (709)
Q Consensus       406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~  479 (709)
                      |..++..+ ..++...+.+.++++....  |+.    .....+...+...|++++|...|+.+... .-.|..  ...-.
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~   90 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence            33344444 3666777777777776642  322    22333445566777777777777777653 222221  23334


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 039873          480 IVGLLSKAGLLDEAEKFMRSTPVK-WDVVAWHTLLNASRVHQNYGFGRRIAEYI  532 (709)
Q Consensus       480 li~~~~~~g~~~~A~~~~~~~~~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~  532 (709)
                      |...+...|++++|+..++..+-. .....+..+...+...|+.++|+..|+++
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            566777777777777777664322 12445555666777778888887777764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.24  E-value=0.0094  Score=54.69  Aligned_cols=130  Identities=17%  Similarity=0.173  Sum_probs=85.3

Q ss_pred             ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHH
Q 039873          402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN--HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYT  478 (709)
Q Consensus       402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~  478 (709)
                      ....+..+...|...|++++|+..|++....+..++  ...+..+...+.+.|++++|...+....+.   .| +...+.
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~  110 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN  110 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence            344667777778888888888888888876433332  246667777778888888888888877652   23 344555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCC
Q 039873          479 CIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKR  555 (709)
Q Consensus       479 ~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  555 (709)
                      .+..+|...|+...+..-++..                  ...++.|.+.++++++.+|++   |..++..+...|+
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            6666776766665554332211                  112577888888888888876   5566666655554

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.039  Score=51.71  Aligned_cols=181  Identities=14%  Similarity=0.070  Sum_probs=129.4

Q ss_pred             cCCHHHHHHHHhhcCC--------CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccccH
Q 039873          385 GGNIEAANKVFSDMRY--------RDI-ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVL-SACGHLGLV  454 (709)
Q Consensus       385 ~g~~~~A~~~f~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~  454 (709)
                      ..+.++..+++.++..        ++. ..|..++-+....|+.+-|...++++... + |.+.-...+= .-+-..|++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence            4678888888877752        222 24455566667788899999999998875 3 5543222211 123446889


Q ss_pred             HHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 039873          455 QEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST--PVKWDVVAWHTLLNASRVHQNYGFGRRIAEYI  532 (709)
Q Consensus       455 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~  532 (709)
                      ++|.++++....+  -+.|..++-.-+-+.-..|+--+|++-+...  .+-.|...|.-|...|...|+++.|.-.++++
T Consensus       103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            9999999998764  2445666766666676777777777654432  12358999999999999999999999999999


Q ss_pred             HhcCCCCchhHHHHHHHhhhcC---CchhHHHHHHHHHhC
Q 039873          533 LHMDPNDVGTYILLSNMYAKEK---RWDGVSKIRKLMKVR  569 (709)
Q Consensus       533 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~  569 (709)
                      +-+.|-++-.+..+++.+.-.|   +++-+++++.+..+-
T Consensus       181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            9999999988889999887666   455567777766653

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.16  E-value=0.0078  Score=57.83  Aligned_cols=99  Identities=17%  Similarity=0.052  Sum_probs=69.6

Q ss_pred             HHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHhcCCch
Q 039873          447 ACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMR-STPVKWD-VVAWHTLLNASRVHQNYG  523 (709)
Q Consensus       447 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~pd-~~~~~~ll~~~~~~g~~~  523 (709)
                      -..+.+++.+|+..|..+++   +.| |...|..-..+|.+.|.++.|.+-.+ .+.+.|. .-+|..|..+|...|+++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence            34566777888877777754   344 45556666777888888888877654 3344555 567778888888888888


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHH
Q 039873          524 FGRRIAEYILHMDPNDVGTYILLSN  548 (709)
Q Consensus       524 ~a~~~~~~~~~~~p~~~~~~~~l~~  548 (709)
                      +|++.|+++++++|++...-..|-.
T Consensus       167 ~A~~aykKaLeldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  167 EAIEAYKKALELDPDNESYKSNLKI  191 (304)
T ss_pred             HHHHHHHhhhccCCCcHHHHHHHHH
Confidence            8888888888888888644444433

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.14  E-value=0.019  Score=57.30  Aligned_cols=143  Identities=11%  Similarity=0.100  Sum_probs=101.7

Q ss_pred             hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 039873          404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSA-CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVG  482 (709)
Q Consensus       404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~  482 (709)
                      .+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++.+  ..+...|...++
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence            367788888888888899999999988543 2223333333222 333577778999999998864  445668899999


Q ss_pred             HHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh
Q 039873          483 LLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY  550 (709)
Q Consensus       483 ~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  550 (709)
                      .+.+.|+.+.|+.+|++. ..-|.    ...|...+.--.++|+.+....+.+++.+.-|++. ....+++-|
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry  150 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY  150 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence            999999999999999854 22233    35999999999999999999999999999887743 334444444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.13  E-value=0.37  Score=48.72  Aligned_cols=109  Identities=13%  Similarity=0.172  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCC
Q 039873          273 INSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSA  352 (709)
Q Consensus       273 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~  352 (709)
                      +.+..|.-+...|+...|.++-.+..-++..-|-..|.+|+..++|++-.++-..      +-.++-|-.++.+|.+.|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN  252 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence            3444566667889999999999999889999999999999999999987765432      2245889999999999999


Q ss_pred             hhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhh
Q 039873          353 LRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSD  397 (709)
Q Consensus       353 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~  397 (709)
                      ..+|..+...+          .+..-+.+|.++|++.+|.+.--+
T Consensus       253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence            88888776551          225678899999999999876443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.10  E-value=0.0042  Score=56.76  Aligned_cols=94  Identities=7%  Similarity=-0.157  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHH
Q 039873          474 LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSN  548 (709)
Q Consensus       474 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  548 (709)
                      ...|..++..+...|++++|...|++. .+.|+    ..+|..+...+...|++++|+..+++++++.|....++..++.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            445666777777888888888887644 22232    3578888889999999999999999999999988888888888


Q ss_pred             Hhh-------hcCCchhHHHHHHHHH
Q 039873          549 MYA-------KEKRWDGVSKIRKLMK  567 (709)
Q Consensus       549 ~~~-------~~g~~~~a~~~~~~m~  567 (709)
                      +|.       ..|++++|...+++..
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a~  140 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQAA  140 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence            888       7888887766666543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.10  E-value=0.0054  Score=56.29  Aligned_cols=81  Identities=11%  Similarity=-0.024  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039873          475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNM  549 (709)
Q Consensus       475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  549 (709)
                      ..+..+...|.+.|++++|...|++. ...|+    ...|..+...+...|+++.|...++++++..|.+...+..++.+
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  115 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            34555666666677777777766533 11122    35677777888888899999999999988888888888888888


Q ss_pred             hhhcCC
Q 039873          550 YAKEKR  555 (709)
Q Consensus       550 ~~~~g~  555 (709)
                      |...|+
T Consensus       116 ~~~~g~  121 (172)
T PRK02603        116 YHKRGE  121 (172)
T ss_pred             HHHcCC
Confidence            887776

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.02  E-value=0.00089  Score=50.45  Aligned_cols=53  Identities=17%  Similarity=0.318  Sum_probs=45.4

Q ss_pred             HhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          517 RVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       517 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      ...|+++.|++.++++++.+|++......++.+|.+.|++++|.++++.+...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999877653

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.00  E-value=0.043  Score=50.10  Aligned_cols=80  Identities=13%  Similarity=0.057  Sum_probs=50.8

Q ss_pred             hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHH
Q 039873          403 IITWNAMICGYSHHGLGREALTLFQNMLAAEERPN--HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTC  479 (709)
Q Consensus       403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~  479 (709)
                      ...|..+...+...|++++|+..|++.......|.  ..++..+...+...|++++|...++.....   .|+ ...+..
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~  111 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN  111 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence            34666677777778888888888888776422221  236666777777788888888887776542   222 334445


Q ss_pred             HHHHHH
Q 039873          480 IVGLLS  485 (709)
Q Consensus       480 li~~~~  485 (709)
                      +...|.
T Consensus       112 la~i~~  117 (168)
T CHL00033        112 MAVICH  117 (168)
T ss_pred             HHHHHH
Confidence            555554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.97  E-value=0.013  Score=46.84  Aligned_cols=88  Identities=18%  Similarity=0.133  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873          406 WNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL  484 (709)
Q Consensus       406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  484 (709)
                      |..+...+...|++++|+..|++..+.  .|+ ...+..+...+...+++++|.+.++...+.  .+.+...+..+...+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~   78 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHH
Confidence            344455555566666666666665553  222 234444444555555555555555554331  111223344444444


Q ss_pred             HhcCCHHHHHHHH
Q 039873          485 SKAGLLDEAEKFM  497 (709)
Q Consensus       485 ~~~g~~~~A~~~~  497 (709)
                      ...|+.++|.+.+
T Consensus        79 ~~~~~~~~a~~~~   91 (100)
T cd00189          79 YKLGKYEEALEAY   91 (100)
T ss_pred             HHHHhHHHHHHHH
Confidence            4444444444443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.95  E-value=0.013  Score=60.55  Aligned_cols=103  Identities=14%  Similarity=0.021  Sum_probs=80.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHh
Q 039873          409 MICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSK  486 (709)
Q Consensus       409 li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~  486 (709)
                      -...+...|++++|+++|++.++.  .| +...|..+..++...|++++|+..++.++..   .| +...|..+..+|..
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHH
Confidence            345677889999999999999984  55 4567888888999999999999999998653   44 46678889999999


Q ss_pred             cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 039873          487 AGLLDEAEKFMRST-PVKWDVVAWHTLLNAS  516 (709)
Q Consensus       487 ~g~~~~A~~~~~~~-~~~pd~~~~~~ll~~~  516 (709)
                      .|++++|...|++. .+.|+......++..|
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999998753 4556644444444433

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.83  Score=49.72  Aligned_cols=336  Identities=13%  Similarity=0.030  Sum_probs=184.2

Q ss_pred             CCCCCCChhhHHH-----HHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---ChHHHHHHHhhCCC-
Q 039873          128 GDNLEPNEYIFSI-----VLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCL---DVEMAKRLLDLLPG-  198 (709)
Q Consensus       128 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~~~~-  198 (709)
                      .-|++.+..-|..     ++.-+...+.+..|.++-..+-..-... ..++.....-+.+..   +-+.+..+-+++.. 
T Consensus       425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~  503 (829)
T KOG2280|consen  425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK  503 (829)
T ss_pred             ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence            3456655555544     4555566677777777765553221111 466666666666653   33444555555555 


Q ss_pred             -CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCC----CChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHH
Q 039873          199 -YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVR----WDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFI  273 (709)
Q Consensus       199 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~  273 (709)
                       ...++|..+..-..+.|+.+-|..+++.=...+-.    .+-.-+...+.-+.+.|+.+...+++-++.+.-   +...
T Consensus       504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~  580 (829)
T KOG2280|consen  504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS  580 (829)
T ss_pred             CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence             56788999998888999999998887653222211    122234555666667777777666666554431   0000


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccC-CCHhhHHHHHHHHHHcCCHhHHHHHHHHH--H----hCCCCCCccchHHHHHH
Q 039873          274 NSAMISMYGKCGKFSNAKKVFEGLET-RNVVLWTAMVAACFQNEYFEEALNLFCGM--E----YEAIRPNEFTFAVMLNS  346 (709)
Q Consensus       274 ~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~----~~g~~pd~~t~~~ll~~  346 (709)
                      +.      .-..+...|..+|.+... .|..+    +..+-+.++-.+++.-|..-  .    ..|..|+   ....-.+
T Consensus       581 l~------~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~  647 (829)
T KOG2280|consen  581 LF------MTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANA  647 (829)
T ss_pred             HH------HHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHH
Confidence            11      111223344444444322 12111    11112222222222222110  0    1122222   3334444


Q ss_pred             HhccCChhHHHHH----------HHHHH-HhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 039873          347 AAGLSALRHGDLL----------HAHIE-KSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSH  415 (709)
Q Consensus       347 ~~~~~~~~~a~~i----------~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~  415 (709)
                      |++........+.          ...+. +.|..-...+.+--+.-+...|+..+|.++-.+.+-||-..|---+.+++.
T Consensus       648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~  727 (829)
T KOG2280|consen  648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD  727 (829)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence            5544432211111          11111 123222223334444556677888889988888888888888888888888


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 039873          416 HGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEK  495 (709)
Q Consensus       416 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  495 (709)
                      .+++++-+++-+.++      .++-|.-...+|.+.|+.++|..++-..   .|..       -.+.+|.++|++.+|.+
T Consensus       728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv---~~l~-------ekv~ay~~~~~~~eAad  791 (829)
T KOG2280|consen  728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV---GGLQ-------EKVKAYLRVGDVKEAAD  791 (829)
T ss_pred             hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc---CChH-------HHHHHHHHhccHHHHHH
Confidence            888887666655543      1455666788888999999988887654   1221       46788888888888887


Q ss_pred             H
Q 039873          496 F  496 (709)
Q Consensus       496 ~  496 (709)
                      +
T Consensus       792 ~  792 (829)
T KOG2280|consen  792 L  792 (829)
T ss_pred             H
Confidence            6

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.94  E-value=0.0029  Score=60.70  Aligned_cols=87  Identities=17%  Similarity=0.077  Sum_probs=77.2

Q ss_pred             HHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhH
Q 039873          482 GLLSKAGLLDEAEKFMRS-TPVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGV  559 (709)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~-~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  559 (709)
                      +-+.+.+++++|+..+.+ +.+.| |++.|..-..+|.+.|.++.|.+-.+..+.++|....+|..|+-+|...|++++|
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            446678999999998874 45565 5888888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 039873          560 SKIRKLMKV  568 (709)
Q Consensus       560 ~~~~~~m~~  568 (709)
                      .+.|++..+
T Consensus       169 ~~aykKaLe  177 (304)
T KOG0553|consen  169 IEAYKKALE  177 (304)
T ss_pred             HHHHHhhhc
Confidence            999987765

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.93  E-value=0.0036  Score=46.59  Aligned_cols=61  Identities=23%  Similarity=0.212  Sum_probs=48.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873          480 IVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV  540 (709)
Q Consensus       480 li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  540 (709)
                      +...+.+.|++++|.+.|+.. ...|+ ...|..+...+...|++++|...++++++..|+++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            456678889999999888754 33464 77888888899999999999999999999999764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.92  E-value=0.82  Score=49.17  Aligned_cols=146  Identities=14%  Similarity=0.091  Sum_probs=64.7

Q ss_pred             HhHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 039873          379 INMYAKGGNIEAANKVFSDMRYRDI---ITWNAMICGYS----HHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHL  451 (709)
Q Consensus       379 i~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~  451 (709)
                      |.++.+.|+.-+|.+++.+|.++..   +.|..+=..|.    -..+..++++-.++....|...|...       +...
T Consensus       930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles 1002 (1189)
T KOG2041|consen  930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLES 1002 (1189)
T ss_pred             HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhh
Confidence            5667778887777777777763211   11111111111    11223344444455555554433322       1122


Q ss_pred             ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH---HHhC-CCCCCHHHHHHHHHHHHhcCCchHHHH
Q 039873          452 GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF---MRST-PVKWDVVAWHTLLNASRVHQNYGFGRR  527 (709)
Q Consensus       452 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~---~~~~-~~~pd~~~~~~ll~~~~~~g~~~~a~~  527 (709)
                      |...++-++.+..-+  |  ....|+-.|..--...|+++.|+..   ++.. .+-|-..+|..|.-+-+....+...-+
T Consensus      1003 ~~l~~~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSK 1078 (1189)
T KOG2041|consen 1003 GLLAEQSRILENTWR--G--AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSK 1078 (1189)
T ss_pred             hhhhhHHHHHHhhhh--h--HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHH
Confidence            333333333332111  1  1234555566666677888888765   1111 122444445444333333333444444


Q ss_pred             HHHHHHhc
Q 039873          528 IAEYILHM  535 (709)
Q Consensus       528 ~~~~~~~~  535 (709)
                      +|-++.+.
T Consensus      1079 AfmkLe~~ 1086 (1189)
T KOG2041|consen 1079 AFMKLEAF 1086 (1189)
T ss_pred             HHHHHHhh
Confidence            44444433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.91  E-value=0.0023  Score=48.94  Aligned_cols=57  Identities=12%  Similarity=0.128  Sum_probs=50.4

Q ss_pred             HHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873          514 NASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK  570 (709)
Q Consensus       514 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  570 (709)
                      ..+...++++.|.++++.+++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            467788999999999999999999999999999999999999999999999887643

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.90  E-value=0.0032  Score=49.76  Aligned_cols=79  Identities=19%  Similarity=0.267  Sum_probs=41.9

Q ss_pred             cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHH
Q 039873          416 HGLGREALTLFQNMLAAEE-RPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEA  493 (709)
Q Consensus       416 ~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A  493 (709)
                      .|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .   ...|. ....-.+..+|.+.|++++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            4666777777777766322 11333444456666667777777666655 1   11221 22223345666666666666


Q ss_pred             HHHHH
Q 039873          494 EKFMR  498 (709)
Q Consensus       494 ~~~~~  498 (709)
                      ++.++
T Consensus        78 i~~l~   82 (84)
T PF12895_consen   78 IKALE   82 (84)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.89  E-value=0.57  Score=46.86  Aligned_cols=96  Identities=11%  Similarity=0.035  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccccHHHHHHHHHHHHHhh-CCCCC--hHH
Q 039873          406 WNAMICGYSHHGLGREALTLFQNMLAAEER-----PNHV-TFVGVLSACGHLGLVQEGFYYLNHLMKQI-GIVPG--LEH  476 (709)
Q Consensus       406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~  476 (709)
                      +..+...+.+.|++++|+++|++....-..     .+.. .|...+-.+...|++..|...++...... ++..+  ...
T Consensus       158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~  237 (282)
T PF14938_consen  158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF  237 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence            345667788888999999999888764322     1221 23333445566788888888888764321 22222  234


Q ss_pred             HHHHHHHHHh--cCCHHHHHHHHHhCC
Q 039873          477 YTCIVGLLSK--AGLLDEAEKFMRSTP  501 (709)
Q Consensus       477 ~~~li~~~~~--~g~~~~A~~~~~~~~  501 (709)
                      ...|++++-.  ...+++|..-|+++.
T Consensus       238 ~~~l~~A~~~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  238 LEDLLEAYEEGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence            5566666643  345777777777764

>PRK15331 chaperone protein SicA; Provisional

Probab=96.88  E-value=0.017  Score=50.88  Aligned_cols=86  Identities=14%  Similarity=0.101  Sum_probs=74.6

Q ss_pred             HHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHH
Q 039873          483 LLSKAGLLDEAEKFMRSTP-V-KWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVS  560 (709)
Q Consensus       483 ~~~~~g~~~~A~~~~~~~~-~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~  560 (709)
                      -+-..|++++|..+|+-+- . .-|...|..|...|...++++.|...+..+..++++|+.++...+..|...|+.+.|+
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence            3457899999999988441 1 2356678889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 039873          561 KIRKLMKV  568 (709)
Q Consensus       561 ~~~~~m~~  568 (709)
                      ..|....+
T Consensus       126 ~~f~~a~~  133 (165)
T PRK15331        126 QCFELVNE  133 (165)
T ss_pred             HHHHHHHh
Confidence            99998875

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.86  E-value=0.013  Score=60.93  Aligned_cols=82  Identities=10%  Similarity=0.008  Sum_probs=63.6

Q ss_pred             cHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 039873          203 EYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYG  282 (709)
Q Consensus       203 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~  282 (709)
                      +..++|+.|.+.|..++++.++..=...|+-||.+|++.++..+.+.|++..|.++..+|...+...+..++..-+..+.
T Consensus       105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~  184 (429)
T PF10037_consen  105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY  184 (429)
T ss_pred             cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence            44578888888888888888888888888888888888888888888888888888888887776666666655555555


Q ss_pred             hc
Q 039873          283 KC  284 (709)
Q Consensus       283 ~~  284 (709)
                      +.
T Consensus       185 ~~  186 (429)
T PF10037_consen  185 KY  186 (429)
T ss_pred             Hh
Confidence            55

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.85  E-value=0.0094  Score=54.73  Aligned_cols=137  Identities=12%  Similarity=0.150  Sum_probs=96.2

Q ss_pred             CChhHHhhhchHHhhhC-CCCCCcchHHHHHHHhc-----CCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcc
Q 039873            8 TSPQAATRCAPFLFKQN-RAPPSVEDTLKLLKHSA-----DSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKC   81 (709)
Q Consensus         8 ~~p~~a~~~~~~~~~~~-~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~   81 (709)
                      ..+...+......|... +-.-+..+|..++..+.     +.|.++--......|.+.|++   .|..+|+.|++.+=| 
T Consensus        24 ~~~~~~l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~---kDL~~Y~~LLDvFPK-   99 (228)
T PF06239_consen   24 KKPSKSLAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVE---KDLEVYKALLDVFPK-   99 (228)
T ss_pred             CCCcccccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCc---ccHHHHHHHHHhCCC-
Confidence            44445555666666654 44668889999998875     456777777788889999999   999999999998886 


Q ss_pred             CChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCC-chHHHHHHHH
Q 039873           82 NQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGR-GAEGRQCHGY  160 (709)
Q Consensus        82 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~  160 (709)
                      |.+- -+.+|+.+           -.-|  ..+-+-|++++++|. ..|+.||..|+..++..+++.+. +....++.-+
T Consensus       100 g~fv-p~n~fQ~~-----------F~hy--p~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYW  164 (228)
T PF06239_consen  100 GKFV-PRNFFQAE-----------FMHY--PRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYW  164 (228)
T ss_pred             CCcc-cccHHHHH-----------hccC--cHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            4432 22222222           1111  123467999999999 89999999999999999987765 3444555555


Q ss_pred             HHH
Q 039873          161 VFK  163 (709)
Q Consensus       161 ~~~  163 (709)
                      |-+
T Consensus       165 mpk  167 (228)
T PF06239_consen  165 MPK  167 (228)
T ss_pred             HHH
Confidence            544

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.82  E-value=0.0008  Score=42.31  Aligned_cols=33  Identities=18%  Similarity=0.436  Sum_probs=30.7

Q ss_pred             HHHHHhcCCCCchhHHHHHHHhhhcCCchhHHH
Q 039873          529 AEYILHMDPNDVGTYILLSNMYAKEKRWDGVSK  561 (709)
Q Consensus       529 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~  561 (709)
                      ++++++++|+++.+|..|+.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            678999999999999999999999999999863

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.088  Score=49.55  Aligned_cols=170  Identities=12%  Similarity=0.094  Sum_probs=117.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccC--CCH--------hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHH
Q 039873          274 NSAMISMYGKCGKFSNAKKVFEGLET--RNV--------VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVM  343 (709)
Q Consensus       274 ~~~li~~y~~~g~~~~A~~~~~~m~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l  343 (709)
                      +++|...|.-...+++-...|+.=..  ..+        ...+.++..+...|.+.-.+.++++.++...+.+....+.+
T Consensus       139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L  218 (366)
T KOG2796|consen  139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL  218 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence            45555555555555555555544322  222        34456777777788888899999999886656677777888


Q ss_pred             HHHHhccCChhHHHHHHHHHHHhCCCCC-----hhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHH
Q 039873          344 LNSAAGLSALRHGDLLHAHIEKSGFKEH-----LIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSH  415 (709)
Q Consensus       344 l~~~~~~~~~~~a~~i~~~~~~~g~~~~-----~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~  415 (709)
                      .+...+.|+.+.+...++...+..-..+     ..+.......|.-..++..|...|+++..   .|++.-|.-.-+..-
T Consensus       219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY  298 (366)
T KOG2796|consen  219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY  298 (366)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence            8888899999999999998776433333     33333444456667889999999988874   456666666666666


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039873          416 HGLGREALTLFQNMLAAEERPNHVTFVGVL  445 (709)
Q Consensus       416 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll  445 (709)
                      .|+..+|++..+.|.+  ..|...+-.+++
T Consensus       299 lg~l~DAiK~~e~~~~--~~P~~~l~es~~  326 (366)
T KOG2796|consen  299 LGKLKDALKQLEAMVQ--QDPRHYLHESVL  326 (366)
T ss_pred             HHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence            7899999999999998  466655554443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=96.79  E-value=0.011  Score=48.01  Aligned_cols=79  Identities=15%  Similarity=0.076  Sum_probs=65.8

Q ss_pred             HHHHHHHHhCCCccHHHHHHHHHHhCCC-CCChhhHHHHHHHHhcCCC--------cHHHHHHHHHHHHcCCCCchHHHH
Q 039873          205 NSVLNGLIENECFRGGVEVLGKMVSGSV-RWDSVTYVNAFGLSASLKD--------LKLGLQVHSQMLKSDIEPDVFINS  275 (709)
Q Consensus       205 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~~  275 (709)
                      ...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..-        +-....+++.|+..++.|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3456666777999999999999999999 9999999999998876532        335667889999999999999999


Q ss_pred             HHHHHHHh
Q 039873          276 AMISMYGK  283 (709)
Q Consensus       276 ~li~~y~~  283 (709)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            99887765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.77  E-value=0.03  Score=58.15  Aligned_cols=118  Identities=14%  Similarity=0.140  Sum_probs=68.3

Q ss_pred             CCCccchHHHHHHHhccCChhHHHHHHHHHHHh--CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC----CCChhhHH
Q 039873          334 RPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKS--GFKEHLIVGNALINMYAKGGNIEAANKVFSDMR----YRDIITWN  407 (709)
Q Consensus       334 ~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~  407 (709)
                      +.+...+..+++.+....+++.++.++-.....  ....-..+..++|..|.+.|..+.+..++..=.    -||..++|
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            345555556666666666666666655555443  222223333466666666666666666665433    25666666


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 039873          408 AMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHL  451 (709)
Q Consensus       408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~  451 (709)
                      .|+..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            66666666666666666666666666556666665555555543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.72  E-value=0.73  Score=46.08  Aligned_cols=28  Identities=14%  Similarity=0.208  Sum_probs=13.6

Q ss_pred             hHHHhHHHh--cCCHHHHHHHHhhcCCCCh
Q 039873          376 NALINMYAK--GGNIEAANKVFSDMRYRDI  403 (709)
Q Consensus       376 ~~li~~y~~--~g~~~~A~~~f~~~~~~~~  403 (709)
                      ..|+.+|-.  ...+++|..-|+.+.+-|.
T Consensus       239 ~~l~~A~~~~D~e~f~~av~~~d~~~~ld~  268 (282)
T PF14938_consen  239 EDLLEAYEEGDVEAFTEAVAEYDSISRLDN  268 (282)
T ss_dssp             HHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence            444444433  2346666666766665543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.67  E-value=0.33  Score=51.59  Aligned_cols=10  Identities=20%  Similarity=0.375  Sum_probs=6.8

Q ss_pred             CcchHHHHHH
Q 039873           98 NVVSYSSLMT  107 (709)
Q Consensus        98 ~~~~~~~li~  107 (709)
                      +.++||+...
T Consensus       498 nSV~wNT~~E  507 (1081)
T KOG1538|consen  498 NSVAWNTQCE  507 (1081)
T ss_pred             ceEEeecccc
Confidence            5678887643

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.66  E-value=0.04  Score=54.88  Aligned_cols=133  Identities=13%  Similarity=0.055  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHH-HhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHH
Q 039873          304 LWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNS-AAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMY  382 (709)
Q Consensus       304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y  382 (709)
                      +|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..||+...+. ++.+...+...++.+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            45555555555555666666666665321 1111222211111 22234555577777666654 456667777777888


Q ss_pred             HhcCCHHHHHHHHhhcCC--C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 039873          383 AKGGNIEAANKVFSDMRY--R----DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVT  440 (709)
Q Consensus       383 ~~~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t  440 (709)
                      .+.|+.+.|+.+|++...  +    -...|...+.-=.+.|+.+.+.++.+++.+  .-|+..+
T Consensus        81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~  142 (280)
T PF05843_consen   81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNS  142 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-H
T ss_pred             HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhH
Confidence            888888888888887653  1    234777777777777877777777777776  3444333

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=96.64  E-value=0.016  Score=47.02  Aligned_cols=81  Identities=19%  Similarity=0.183  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-CCCccchHHHHHHHhccC--------ChhHHHHHHHHHHHhCCCCChhH
Q 039873          304 LWTAMVAACFQNEYFEEALNLFCGMEYEAI-RPNEFTFAVMLNSAAGLS--------ALRHGDLLHAHIEKSGFKEHLIV  374 (709)
Q Consensus       304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~~~~~~~--------~~~~a~~i~~~~~~~g~~~~~~~  374 (709)
                      +-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        .+-....+++.++..+++|+..+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            344556677777999999999999999999 899999999999876643        23455677888888888888888


Q ss_pred             HhHHHhHHHh
Q 039873          375 GNALINMYAK  384 (709)
Q Consensus       375 ~~~li~~y~~  384 (709)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            8888877665

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.60  E-value=0.16  Score=51.72  Aligned_cols=157  Identities=18%  Similarity=0.117  Sum_probs=94.9

Q ss_pred             hHHHhcCCHHHHHHHHhhcCCC---Ch----hhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039873          380 NMYAKGGNIEAANKVFSDMRYR---DI----ITWNAMICGYSH---HGLGREALTLFQNMLAAEERPNHVTFVGVLSACG  449 (709)
Q Consensus       380 ~~y~~~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~  449 (709)
                      -.|-...+++...++.+.+...   ++    ..--...-++-+   .|+.++|++++..+....-.++..||..+...|-
T Consensus       149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK  228 (374)
T PF13281_consen  149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK  228 (374)
T ss_pred             HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            3466677777777777776642   11    111123344555   6888888888888666556677777776665442


Q ss_pred             ---------ccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHH----HHHH---H----hCC---CCCCH
Q 039873          450 ---------HLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEA----EKFM---R----STP---VKWDV  506 (709)
Q Consensus       450 ---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~----~~~---~~pd~  506 (709)
                               .....++|...|.+.   +.+.|+..+.-.++.++...|.-.+.    .++-   .    +-+   -..|-
T Consensus       229 D~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dY  305 (374)
T PF13281_consen  229 DLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDY  305 (374)
T ss_pred             HHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccH
Confidence                     123467777777654   55566655444455555555542222    2221   1    111   12345


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873          507 VAWHTLLNASRVHQNYGFGRRIAEYILHMDPND  539 (709)
Q Consensus       507 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  539 (709)
                      ..+.+++.++.-.|+.+.|.+..+++.++.|+.
T Consensus       306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  306 WDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            555778888888888888888888888887654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.067  Score=53.69  Aligned_cols=263  Identities=10%  Similarity=-0.047  Sum_probs=154.7

Q ss_pred             HHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-ccchHHHHHHHhccCChh
Q 039873          279 SMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN-EFTFAVMLNSAAGLSALR  354 (709)
Q Consensus       279 ~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~  354 (709)
                      ..+.+..++.+|+..+....+   .++.-|..-...+..-|++++|+--.++-.+.  +|. ..+..-.-.++...++..
T Consensus        57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i  134 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI  134 (486)
T ss_pred             chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence            455666777777777765443   45666777777777788888877666554432  222 223333444444445555


Q ss_pred             HHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CChhhHHHH-HHHHHHcCChHHHHHHHHH
Q 039873          355 HGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-----RDIITWNAM-ICGYSHHGLGREALTLFQN  428 (709)
Q Consensus       355 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~  428 (709)
                      +|.+.++.         ...+           ....|+..++.+..     |--.+|..+ ..++...|++++|.+.--.
T Consensus       135 ~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~  194 (486)
T KOG0550|consen  135 EAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID  194 (486)
T ss_pred             HHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence            55444431         0000           11222222222221     222333333 2345566777777776655


Q ss_pred             HHHCCCCCCHHHHHHHHH--HHhccccHHHHHHHHHHHHHhhCCCCChH-------------HHHHHHHHHHhcCCHHHH
Q 039873          429 MLAAEERPNHVTFVGVLS--ACGHLGLVQEGFYYLNHLMKQIGIVPGLE-------------HYTCIVGLLSKAGLLDEA  493 (709)
Q Consensus       429 m~~~g~~pd~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------------~~~~li~~~~~~g~~~~A  493 (709)
                      .++.  .++. .+...++  ++-..++.+.|...|++.+   .+.|+-.             .+.-=.+...+.|++.+|
T Consensus       195 ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A  268 (486)
T KOG0550|consen  195 ILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA  268 (486)
T ss_pred             HHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence            5542  2221 1111222  2334566777777776653   2334321             112223456688999999


Q ss_pred             HHHHH-hCCCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873          494 EKFMR-STPVKWD-----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK  567 (709)
Q Consensus       494 ~~~~~-~~~~~pd-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  567 (709)
                      .+.+. .+.+.|+     .-.|.....+..+.|+.++|+.-.+.+++++|.-...|..-++.+...++|++|.+-++...
T Consensus       269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~  348 (486)
T KOG0550|consen  269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM  348 (486)
T ss_pred             HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99876 4455444     44555556677789999999999999999998877888888899999999999999998876


Q ss_pred             hC
Q 039873          568 VR  569 (709)
Q Consensus       568 ~~  569 (709)
                      +.
T Consensus       349 q~  350 (486)
T KOG0550|consen  349 QL  350 (486)
T ss_pred             hh
Confidence            54

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.052  Score=52.60  Aligned_cols=101  Identities=13%  Similarity=0.054  Sum_probs=82.5

Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCchHHHHHHHHHHhcCCCCchhHHH
Q 039873          471 VPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVH---QNYGFGRRIAEYILHMDPNDVGTYIL  545 (709)
Q Consensus       471 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~  545 (709)
                      +-|..-|--|...|.+.|+++.|..-|.+. .+.| ++..+..+..++...   ....++..+++++++.+|.|..+...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            456778888999999999999998887643 3334 466676666654432   25688999999999999999999999


Q ss_pred             HHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873          546 LSNMYAKEKRWDGVSKIRKLMKVRKV  571 (709)
Q Consensus       546 l~~~~~~~g~~~~a~~~~~~m~~~~~  571 (709)
                      |.-.+...|++.+|...|+.|.+...
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp  258 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLP  258 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence            99999999999999999999998654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.60  E-value=0.059  Score=45.50  Aligned_cols=91  Identities=18%  Similarity=0.179  Sum_probs=66.9

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHH
Q 039873          408 AMICGYSHHGLGREALTLFQNMLAAEERPN--HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLL  484 (709)
Q Consensus       408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~  484 (709)
                      .+..++-..|+.++|+.+|++....|....  ...+..+.+++...|++++|..+++.....++-.+ +......+.-++
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence            345677788999999999999999887665  33677788889999999999999998876533211 122222344567


Q ss_pred             HhcCCHHHHHHHHH
Q 039873          485 SKAGLLDEAEKFMR  498 (709)
Q Consensus       485 ~~~g~~~~A~~~~~  498 (709)
                      ...|+.++|++.+-
T Consensus        86 ~~~gr~~eAl~~~l   99 (120)
T PF12688_consen   86 YNLGRPKEALEWLL   99 (120)
T ss_pred             HHCCCHHHHHHHHH
Confidence            78899999988753

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.55  E-value=0.019  Score=57.25  Aligned_cols=129  Identities=9%  Similarity=-0.004  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHH---HHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHh-------CCCC-CCHH
Q 039873          440 TFVGVLSACGHLGLVQEGFYYLNHL---MKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRS-------TPVK-WDVV  507 (709)
Q Consensus       440 t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~~-pd~~  507 (709)
                      .|..+.+.|.-.|+++.|+..++.-   .+++|-... ...+..|.+.+.-.|+++.|.+.++.       ++-+ -...
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            4555666666678999998887653   234454332 35677888899999999999998763       2211 2355


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhc----C--CCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          508 AWHTLLNASRVHQNYGFGRRIAEYILHM----D--PNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       508 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +.-+|.+.|....+++.|+..+.+=+.+    +  ......+.+|+++|...|..++|..+...-.+
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            6667888888888899999988765442    2  23456889999999999999999887766543

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.53  E-value=0.03  Score=51.51  Aligned_cols=98  Identities=10%  Similarity=0.140  Sum_probs=71.2

Q ss_pred             HHHHhhc--CCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 039873          392 NKVFSDM--RYRDIITWNAMICGYSHH-----GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHL-------------  451 (709)
Q Consensus       392 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~-------------  451 (709)
                      ...|+..  ..+|-.+|..++..|.+.     |..+=....++.|.+-|+.-|..+|+.||+.+=+.             
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~  113 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM  113 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence            3445554  356667777777777643     66676777788888888888888888888876542             


Q ss_pred             ---ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH
Q 039873          452 ---GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLL  490 (709)
Q Consensus       452 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  490 (709)
                         ..-+-|++++++|.. +|+.||.+++..|++.+++.+..
T Consensus       114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p  154 (228)
T PF06239_consen  114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP  154 (228)
T ss_pred             cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence               134567888888855 79999999999999888877653

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.51  E-value=0.083  Score=46.39  Aligned_cols=95  Identities=9%  Similarity=-0.031  Sum_probs=67.4

Q ss_pred             HHHhHHHhcCCHHHHHHHHhhcC--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 039873          377 ALINMYAKGGNIEAANKVFSDMR--Y-RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGL  453 (709)
Q Consensus       377 ~li~~y~~~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~  453 (709)
                      .+..-+...|++++|.++|+-+.  . .+..-|-.|...+-..|++++|+..|....... +-|...+-.+..++...|+
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~  118 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN  118 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence            34445567788888888887665  2 355677778888888888888888888887743 2345577777777888888


Q ss_pred             HHHHHHHHHHHHHhhCCCC
Q 039873          454 VQEGFYYLNHLMKQIGIVP  472 (709)
Q Consensus       454 ~~~a~~~~~~~~~~~~~~p  472 (709)
                      .+.|++.|+..+...+-.|
T Consensus       119 ~~~A~~aF~~Ai~~~~~~~  137 (157)
T PRK15363        119 VCYAIKALKAVVRICGEVS  137 (157)
T ss_pred             HHHHHHHHHHHHHHhccCh
Confidence            8888888887766544333

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.51  E-value=0.0068  Score=45.70  Aligned_cols=64  Identities=19%  Similarity=0.160  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-CchHHHHHHHHHHhcCC
Q 039873          474 LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQ-NYGFGRRIAEYILHMDP  537 (709)
Q Consensus       474 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p  537 (709)
                      ...|..+...+.+.|++++|+..|++. ...|+ ...|..+..++...| ++++|++.++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            345666777777777777777776632 33454 677777888888888 68888888888888877

...

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.48  E-value=0.37  Score=51.21  Aligned_cols=70  Identities=11%  Similarity=0.000  Sum_probs=42.5

Q ss_pred             HHHHHHHHhcCCCchHHHHH--HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCC
Q 039873          138 FSIVLSSCSRSGRGAEGRQC--HGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENE  215 (709)
Q Consensus       138 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g  215 (709)
                      ++..=++|.+.+++.--+-+  ++.+.+.|-.|+...   +.+.++-.|.+.+|.++|.+                  +|
T Consensus       601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G  659 (1081)
T KOG1538|consen  601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG  659 (1081)
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence            44444555555554433332  345556676666543   33455667888888888764                  56


Q ss_pred             CccHHHHHHHHHH
Q 039873          216 CFRGGVEVLGKMV  228 (709)
Q Consensus       216 ~~~~A~~l~~~m~  228 (709)
                      ....|+++|..|+
T Consensus       660 ~enRAlEmyTDlR  672 (1081)
T KOG1538|consen  660 HENRALEMYTDLR  672 (1081)
T ss_pred             chhhHHHHHHHHH
Confidence            7777888887775

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.43  E-value=0.45  Score=42.60  Aligned_cols=131  Identities=11%  Similarity=-0.000  Sum_probs=92.6

Q ss_pred             CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC------CCCCHH
Q 039873          434 ERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP------VKWDVV  507 (709)
Q Consensus       434 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~pd~~  507 (709)
                      +.|....-..+..+....|+..+|...|++... --+.-|....-.+..+....+++.+|...++...      -.||..
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            456655566677777788888888888877654 1334455666667777777788888877766441      234433


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          508 AWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       508 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                        -.+...+...|.++.|+..|+.++...|. +..-.....++.++|+.+++..-+..+.+
T Consensus       164 --Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         164 --LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             --HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence              34566788899999999999999998774 45566677888999999988776665554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.42  E-value=0.012  Score=60.55  Aligned_cols=63  Identities=11%  Similarity=-0.105  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch---hHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG---TYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ...|+.+..++...|++++|+..++++++++|++..   +|..++.+|...|+.++|.+.+++..+
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455555555555555555555555555555555542   255555555555555555555555544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.30  E-value=0.56  Score=45.53  Aligned_cols=56  Identities=14%  Similarity=0.059  Sum_probs=37.9

Q ss_pred             HHHHHHhcCChHHHHHHHHhccCCC---Hhh---HHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 039873          277 MISMYGKCGKFSNAKKVFEGLETRN---VVL---WTAMVAACFQNEYFEEALNLFCGMEYEA  332 (709)
Q Consensus       277 li~~y~~~g~~~~A~~~~~~m~~~~---~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g  332 (709)
                      ....+.+.|++++|.+.|+++....   ...   .-.++.+|.+.+++++|...|++..+.-
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            3444566788888888888876521   122   2234567788888888888888887753

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.27  E-value=0.029  Score=56.01  Aligned_cols=255  Identities=16%  Similarity=0.069  Sum_probs=152.8

Q ss_pred             HHHhCCCccHHHHHHHHHHhCCCCCChh----hHHHHHHHHhcCCCcHHHHHHHHHHHH----cCC-CCchHHHHHHHHH
Q 039873          210 GLIENECFRGGVEVLGKMVSGSVRWDSV----TYVNAFGLSASLKDLKLGLQVHSQMLK----SDI-EPDVFINSAMISM  280 (709)
Q Consensus       210 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~li~~  280 (709)
                      -+++.|+.+..+.+|+..++.|.. |..    .|..+-.+|.-.+++++|.++|..=+.    .|- .-.......|.+.
T Consensus        26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            467788888888888888876643 332    455666677777888888887754221    110 0111222233334


Q ss_pred             HHhcCChHHHHHHHHhcc-------CC--CHhhHHHHHHHHHHcCC--------------------HhHHHHHHHHHH--
Q 039873          281 YGKCGKFSNAKKVFEGLE-------TR--NVVLWTAMVAACFQNEY--------------------FEEALNLFCGME--  329 (709)
Q Consensus       281 y~~~g~~~~A~~~~~~m~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~--  329 (709)
                      +--.|.+++|.-...+-.       .+  ....+..+...|...|+                    ++.|.++|.+=.  
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l  184 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL  184 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            444566666654332211       11  12233344555554442                    234455554321  


Q ss_pred             --hCCCC-CCccchHHHHHHHhccCChhHHHHHHHHHHH----hCCC-CChhHHhHHHhHHHhcCCHHHHHHHHhhcC--
Q 039873          330 --YEAIR-PNEFTFAVMLNSAAGLSALRHGDLLHAHIEK----SGFK-EHLIVGNALINMYAKGGNIEAANKVFSDMR--  399 (709)
Q Consensus       330 --~~g~~-pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~----~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--  399 (709)
                        ..|-. .--..|..+-+.|.-.|+++.+...|+.-+.    .|-. .....+..|.++|.-.|+++.|.+.|+...  
T Consensus       185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence              22211 1123456666666778899999988876442    2311 223466778888999999999999887643  


Q ss_pred             -----CCC--hhhHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 039873          400 -----YRD--IITWNAMICGYSHHGLGREALTLFQNMLA----AE-ERPNHVTFVGVLSACGHLGLVQEGFYYLNHLM  465 (709)
Q Consensus       400 -----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~  465 (709)
                           .+.  ..+..+|...|.-...+++|+.++.+-..    .+ ..-....+.++..++...|..++|..+.+.-.
T Consensus       265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence                 333  34667788888888889999998877443    11 22234578899999999999999887766543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.23  E-value=0.0056  Score=46.01  Aligned_cols=49  Identities=20%  Similarity=0.209  Sum_probs=27.3

Q ss_pred             ccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 039873          450 HLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST  500 (709)
Q Consensus       450 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  500 (709)
                      ..|++++|.++|+.+....  +-+...+-.++.+|.+.|++++|.+++++.
T Consensus         3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred             hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3566666666666665431  123445555666666666666666666554

...

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.23  E-value=2.5  Score=46.27  Aligned_cols=325  Identities=9%  Similarity=-0.001  Sum_probs=178.3

Q ss_pred             HHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCC---hHHHHHHHhcCCC--CCcchHHHHHHHH
Q 039873           35 KLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQ---ISIARQLFDNMRQ--RNVVSYSSLMTWY  109 (709)
Q Consensus        35 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~~f~~~~~--~~~~~~~~li~~~  109 (709)
                      .++..+...+.+..|.++..++-..-..    +-.++.....-+.+..+   -+-+..+=+++..  ...++|..+.+.-
T Consensus       442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~----~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~A  517 (829)
T KOG2280|consen  442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ----GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRA  517 (829)
T ss_pred             hhhHHHHhcchhHHHHHHHHHhCCcccc----ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHH
Confidence            3455556667777777776665432222    24667777777776632   2333344444444  4567788888888


Q ss_pred             HhCCChhHHHHHHHHhhhCCCCC----CChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 039873          110 LHNGFLLETLKLFKNMVSGDNLE----PNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLD  185 (709)
Q Consensus       110 ~~~g~~~~A~~~~~~m~~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  185 (709)
                      ...|+++.|..+++.=. ..+-+    .+..-+...|+-+...|+.+...++.-.+.+.-.   ...+...      ..+
T Consensus       518 y~~GR~~LA~kLle~E~-~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~---~s~l~~~------l~~  587 (829)
T KOG2280|consen  518 YQEGRFELARKLLELEP-RSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN---RSSLFMT------LRN  587 (829)
T ss_pred             HhcCcHHHHHHHHhcCC-CccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH---HHHHHHH------HHh
Confidence            88899999988876533 22211    1444567777778888888877777666554321   1111111      112


Q ss_pred             hHHHHHHHhhCCC-CCcccHHHHHHHHHhCCCccHHHHHHHHH------HhCCCCCChhhHHHHHHHHhcCCCcHHHHHH
Q 039873          186 VEMAKRLLDLLPG-YDVFEYNSVLNGLIENECFRGGVEVLGKM------VSGSVRWDSVTYVNAFGLSASLKDLKLGLQV  258 (709)
Q Consensus       186 ~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m------~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  258 (709)
                      ...|..++..... .|..+    +..+.+.++-.+++.-|..=      ...|..|+   ......+|++........+.
T Consensus       588 ~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka  660 (829)
T KOG2280|consen  588 QPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKA  660 (829)
T ss_pred             chhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHH
Confidence            2233333333221 11110    11112222222222222110      01122233   23333444444432211111


Q ss_pred             ----------HHHHH-HcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHH
Q 039873          259 ----------HSQML-KSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCG  327 (709)
Q Consensus       259 ----------~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  327 (709)
                                .+.+. +.|..-.-.+.+--+.-+...|+..+|.++-.+..-+|-..|---+.+++..+++++-.++-+.
T Consensus       661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAks  740 (829)
T KOG2280|consen  661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKS  740 (829)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence                      11111 1222222223344455566778888899988888888888888888888888888887766544


Q ss_pred             HHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHH
Q 039873          328 MEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVF  395 (709)
Q Consensus       328 m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f  395 (709)
                      +.      .+.-|.....+|.+.|+.++|..+....-.         +.-.+.+|.++|++.+|.++-
T Consensus       741 kk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  741 KK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             cC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence            43      255677788888888888888877654321         114677888888888887653

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.22  E-value=0.16  Score=55.03  Aligned_cols=59  Identities=8%  Similarity=-0.029  Sum_probs=29.4

Q ss_pred             hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 039873          404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHL  464 (709)
Q Consensus       404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~  464 (709)
                      ..|.++...+...|++++|...+++...  +.|+...|..+...+...|+.++|.+.++..
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444444444555555555555555  2344445555555555555555555555544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.21  E-value=1.8  Score=44.49  Aligned_cols=449  Identities=14%  Similarity=0.107  Sum_probs=245.4

Q ss_pred             CCCCchhHHHHHHHHHHhcCCCC--CCchhHHHHHHHHHHccCChHHHHHHHhcCCCC-CcchHHHHHHHH--HhCCChh
Q 039873           42 DSKDLKLGKVIHAHLIITTESSR--NENVVLTNSLVNLYAKCNQISIARQLFDNMRQR-NVVSYSSLMTWY--LHNGFLL  116 (709)
Q Consensus        42 ~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g~~~  116 (709)
                      +.++..++..++..+.+..-..+  .......+.++++|.-. +++..........+. ....|-.+..++  -+.+.++
T Consensus        18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~   96 (549)
T PF07079_consen   18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR   96 (549)
T ss_pred             HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence            56788999999998877543300  01134567888888753 455544444444331 134466666553  4678899


Q ss_pred             HHHHHHHHhhhCC--CCCC------------ChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCC----CCchhHHHHHHH
Q 039873          117 ETLKLFKNMVSGD--NLEP------------NEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGL----VFCKYVRNALVE  178 (709)
Q Consensus       117 ~A~~~~~~m~~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~  178 (709)
                      .|++.+..-. ..  +-.|            |..-=+....++...|.+.+|+.+++.++..=+    .-+..+|+.++-
T Consensus        97 kal~~ls~w~-~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl  175 (549)
T PF07079_consen   97 KALQALSVWK-EQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL  175 (549)
T ss_pred             HHHHHHHHHH-hhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence            9998887665 22  2221            222224456677889999999999888876544    467888888888


Q ss_pred             HHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC--CcHHHH
Q 039873          179 LYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLK--DLKLGL  256 (709)
Q Consensus       179 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~  256 (709)
                      ++++.=-++    +-+.+...=...|--||-.|.+.=+      .++.-.=..+-|...-+..++....-..  .+.--.
T Consensus       176 mlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~m  245 (549)
T PF07079_consen  176 MLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLM  245 (549)
T ss_pred             HHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHH
Confidence            877642222    1122222222235555555544211      1111111123444444444444433222  233334


Q ss_pred             HHHHHHHHcCCCCch-HHHHHHHHHHHhcCChHHHHHHHHhcc--------CCCHhhHHHHHHHHHHcCCHhHHHHHHHH
Q 039873          257 QVHSQMLKSDIEPDV-FINSAMISMYGKCGKFSNAKKVFEGLE--------TRNVVLWTAMVAACFQNEYFEEALNLFCG  327 (709)
Q Consensus       257 ~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~  327 (709)
                      ++++.-.+.-+.|+- .+...|+.-+.+  +.+++..+.+.+.        ++=+.++..++...++.++..+|-+.+.-
T Consensus       246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l  323 (549)
T PF07079_consen  246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL  323 (549)
T ss_pred             HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            555555455455553 344555555555  4555555444432        23456788888889999999999888876


Q ss_pred             HHhCCCCCCccch-------HHHHHHHh-cc---CChhHHHHHHHHHHHhCCCCChhHHhHHH---hHHHhcCC-HHHHH
Q 039873          328 MEYEAIRPNEFTF-------AVMLNSAA-GL---SALRHGDLLHAHIEKSGFKEHLIVGNALI---NMYAKGGN-IEAAN  392 (709)
Q Consensus       328 m~~~g~~pd~~t~-------~~ll~~~~-~~---~~~~~a~~i~~~~~~~g~~~~~~~~~~li---~~y~~~g~-~~~A~  392 (709)
                      +.-.  .|+...-       ..+-+..+ .-   .++..-..+|..+...+++.-.-+ .-|+   .-|-+.|. -++|.
T Consensus       324 L~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLv-h~L~~~Ak~lW~~g~~dekal  400 (549)
T PF07079_consen  324 LKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLV-HYLVFGAKHLWEIGQCDEKAL  400 (549)
T ss_pred             HHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHH-HHHHHHHHHHHhcCCccHHHH
Confidence            6542  3433211       11111111 11   122222334444444333221111 1121   22334444 77888


Q ss_pred             HHHhhcC---CCChhhHHHHHH----HHHHc---CChHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HhccccHHH
Q 039873          393 KVFSDMR---YRDIITWNAMIC----GYSHH---GLGREALTLFQNMLAAEERPNHV----TFVGVLSA--CGHLGLVQE  456 (709)
Q Consensus       393 ~~f~~~~---~~~~~~~~~li~----~~~~~---g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~a--~~~~g~~~~  456 (709)
                      ++++.+.   .-|..+-|.+..    .|.+.   ....+-+.+-+-..+.|+.|-.+    .-+.+-.|  .-..|++.+
T Consensus       401 nLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~k  480 (549)
T PF07079_consen  401 NLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHK  480 (549)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHH
Confidence            8887765   235544444322    22221   12333344444455678777433    33333333  345688888


Q ss_pred             HHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 039873          457 GFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTL  512 (709)
Q Consensus       457 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~l  512 (709)
                      +.-+-...   ..+.|++.+|.-+.-.+....+++||.+++..+|  |+..+|++-
T Consensus       481 c~~ys~WL---~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk  531 (549)
T PF07079_consen  481 CYLYSSWL---TKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK  531 (549)
T ss_pred             HHHHHHHH---HHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence            87655554   3678899999988888888999999999999986  677777653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.16  E-value=0.35  Score=47.00  Aligned_cols=169  Identities=14%  Similarity=0.110  Sum_probs=101.2

Q ss_pred             HHhHHHhcCCHHHHHHHHhhcCC--CCh-h---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 039873          378 LINMYAKGGNIEAANKVFSDMRY--RDI-I---TWNAMICGYSHHGLGREALTLFQNMLAAEERPN--HVTFVGVLSACG  449 (709)
Q Consensus       378 li~~y~~~g~~~~A~~~f~~~~~--~~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~  449 (709)
                      ....+.+.|++++|.+.|+++..  |+. .   ..-.++.+|.+.+++++|...|++..+.  -|+  ..-+...+.+.+
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~  115 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT  115 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence            44455667888888888888763  222 1   1233556777888888888888888774  333  233433343332


Q ss_pred             c--cc---------------c---HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 039873          450 H--LG---------------L---VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAW  509 (709)
Q Consensus       450 ~--~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~  509 (709)
                      .  .+               +   ..+|...|+.+++                -|-.+.-..+|...+..+.   +...-
T Consensus       116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~---~~la~  176 (243)
T PRK10866        116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLK---DRLAK  176 (243)
T ss_pred             hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHH---HHHHH
Confidence            1  10               1   1233333433333                3333333445544433321   11111


Q ss_pred             H--HHHHHHHhcCCchHHHHHHHHHHhcCCCC---chhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873          510 H--TLLNASRVHQNYGFGRRIAEYILHMDPND---VGTYILLSNMYAKEKRWDGVSKIRKLMK  567 (709)
Q Consensus       510 ~--~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~  567 (709)
                      .  .+..-|.+.|.+.-|..-++.+++.-|+.   ......+..+|.+.|..++|..+.....
T Consensus       177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            1  23334778899999999999999877653   4567788899999999999999887664

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.11  E-value=2.5  Score=45.67  Aligned_cols=146  Identities=13%  Similarity=0.056  Sum_probs=66.2

Q ss_pred             HHHHHHcCCHhHHHHHHHHHHh----CCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh
Q 039873          309 VAACFQNEYFEEALNLFCGMEY----EAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK  384 (709)
Q Consensus       309 i~~~~~~g~~~~A~~~~~~m~~----~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~  384 (709)
                      |..+-+.|+.-+|.+++.+|.+    .+.+|-..--.-++.+..-. +..++..-.+...+.|...+...       +..
T Consensus       930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE-~h~~~ik~~~~~~~~g~~~dat~-------lle 1001 (1189)
T KOG2041|consen  930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVE-NHRQTIKELRKIDKHGFLEDATD-------LLE 1001 (1189)
T ss_pred             HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhcCcchhhhh-------hhh
Confidence            4455667777777777777754    33443332222233332211 11111112222223443322211       223


Q ss_pred             cCCHHHHHHHHhhcCCCChhhHHHHHHH--HHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 039873          385 GGNIEAANKVFSDMRYRDIITWNAMICG--YSHHGLGREALTLFQNMLA-AEERPNHVTFVGVLSACGHLGLVQEGFYYL  461 (709)
Q Consensus       385 ~g~~~~A~~~f~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~  461 (709)
                      .|-+.++-++.+..- +....|.-||.+  ....|..+.|++.--.+.. ..+-|-...|..+.-+.+....+...-+.|
T Consensus      1002 s~~l~~~~ri~~n~W-rgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1002 SGLLAEQSRILENTW-RGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred             hhhhhhHHHHHHhhh-hhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence            444555555554322 334455555544  4456888888876544432 124555556655544433333443333333


Q ss_pred             HH
Q 039873          462 NH  463 (709)
Q Consensus       462 ~~  463 (709)
                      -+
T Consensus      1081 mk 1082 (1189)
T KOG2041|consen 1081 MK 1082 (1189)
T ss_pred             HH
Confidence            33

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.10  E-value=0.13  Score=43.44  Aligned_cols=105  Identities=5%  Similarity=-0.051  Sum_probs=59.9

Q ss_pred             HHHHHhCCCccHHHHHHHHHHhCCCCCC--hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHh
Q 039873          208 LNGLIENECFRGGVEVLGKMVSGSVRWD--SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIE--PDVFINSAMISMYGK  283 (709)
Q Consensus       208 i~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~y~~  283 (709)
                      ...+-..|+.++|+.+|++....|...+  ...+..+.+.+...|++++|..+++......-.  .+..+...+.-++..
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence            3455667778888888888777776544  234556666677777777777777776654211  022222223335556


Q ss_pred             cCChHHHHHHHHhccCCCHhhHHHHHHHH
Q 039873          284 CGKFSNAKKVFEGLETRNVVLWTAMVAAC  312 (709)
Q Consensus       284 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~  312 (709)
                      .|+.++|.+.+-....++...|.--|..|
T Consensus        88 ~gr~~eAl~~~l~~la~~~~~y~ra~~~y  116 (120)
T PF12688_consen   88 LGRPKEALEWLLEALAETLPRYRRAIRFY  116 (120)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777776666554433333333333333

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.95  E-value=0.014  Score=39.29  Aligned_cols=42  Identities=26%  Similarity=0.375  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHH
Q 039873          507 VAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSN  548 (709)
Q Consensus       507 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  548 (709)
                      .+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            357788889999999999999999999999999888777653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.93  E-value=0.36  Score=45.59  Aligned_cols=165  Identities=10%  Similarity=-0.017  Sum_probs=97.3

Q ss_pred             HhHHHhHHHhcCCHHHHHHHHhhcCC--CC--------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039873          375 GNALINMYAKGGNIEAANKVFSDMRY--RD--------IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGV  444 (709)
Q Consensus       375 ~~~li~~y~~~g~~~~A~~~f~~~~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l  444 (709)
                      +++|+..|.-..-+++-...|+.-..  ..        ...-+.++..+.-+|.+.-.+.++++.++..-+-+..-...+
T Consensus       139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L  218 (366)
T KOG2796|consen  139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL  218 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence            35555555544444444444443221  12        223456666677777888888888888886545566677777


Q ss_pred             HHHHhccccHHHHHHHHHHHHHhh----CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHh
Q 039873          445 LSACGHLGLVQEGFYYLNHLMKQI----GIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVK--WDVVAWHTLLNASRV  518 (709)
Q Consensus       445 l~a~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--pd~~~~~~ll~~~~~  518 (709)
                      .+.-.+.|+.+.|..+|+...+..    +++-...+...+...|.-+.++.+|...+.+.+..  .|++..|.-.-...-
T Consensus       219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY  298 (366)
T KOG2796|consen  219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY  298 (366)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence            777888889888888888665432    22223333334444555666777777777665432  123333333323334


Q ss_pred             cCCchHHHHHHHHHHhcCCCC
Q 039873          519 HQNYGFGRRIAEYILHMDPND  539 (709)
Q Consensus       519 ~g~~~~a~~~~~~~~~~~p~~  539 (709)
                      .|+...|.+..+.+.+..|..
T Consensus       299 lg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  299 LGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHHHHHHHHHhccCCcc
Confidence            566777777777777777653

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.88  E-value=0.55  Score=39.45  Aligned_cols=139  Identities=12%  Similarity=0.030  Sum_probs=81.7

Q ss_pred             HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039873          415 HHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE  494 (709)
Q Consensus       415 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  494 (709)
                      -.|..++..++..+...+   .+..-++.++.-....-+-+-..+.++.+    |-..|.          ..||++....
T Consensus        14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI----GkiFDi----------s~C~NlKrVi   76 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI----GKIFDI----------SKCGNLKRVI   76 (161)
T ss_dssp             HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH----GGGS-G----------GG-S-THHHH
T ss_pred             HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH----hhhcCc----------hhhcchHHHH
Confidence            356677777777777653   23334444443333333333444444443    333332          3456666666


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCc
Q 039873          495 KFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVK  572 (709)
Q Consensus       495 ~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  572 (709)
                      ..+-.++  .+......-+.+....|.-+.-.++...+.+.+..++....-++++|.+.|...++.+++++.-++|++
T Consensus        77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            6655554  244455666778888999899999999888766667889999999999999999999999999999873

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.84  E-value=0.12  Score=45.74  Aligned_cols=62  Identities=23%  Similarity=0.235  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          507 VAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       507 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      .....++..+...|+++.|....+.++..+|.+...|..++.+|...|+..+|.++++.+..
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            34566777888999999999999999999999999999999999999999999999999864

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.84  E-value=0.059  Score=52.75  Aligned_cols=92  Identities=9%  Similarity=-0.031  Sum_probs=51.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC---chhHHHHHH
Q 039873          477 YTCIVGLLSKAGLLDEAEKFMRSTP-VKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND---VGTYILLSN  548 (709)
Q Consensus       477 ~~~li~~~~~~g~~~~A~~~~~~~~-~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~  548 (709)
                      |..-+..+.+.|++++|...|+..- ..|+    ...+--+...+...|+++.|...|+++++..|++   +..+..++.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            4444444444556666655554331 1122    2334445556666677777777777776665543   334445566


Q ss_pred             HhhhcCCchhHHHHHHHHHh
Q 039873          549 MYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       549 ~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +|...|++++|.++++...+
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            66667777777777766654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.70  E-value=4.3  Score=44.72  Aligned_cols=76  Identities=13%  Similarity=0.067  Sum_probs=49.2

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 039873          170 KYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSAS  248 (709)
Q Consensus       170 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~  248 (709)
                      ..++...|+.+.-.|++++|-...-.|...+..-|.-.+.-+...++......+   +.....+.+...|..+|..+..
T Consensus       392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence            346777777777888888888888888777777777777777777665443322   2222223445566666666654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.65  E-value=0.21  Score=48.91  Aligned_cols=94  Identities=13%  Similarity=0.132  Sum_probs=52.0

Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC
Q 039873          414 SHHGLGREALTLFQNMLAAEERPNH----VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGL  489 (709)
Q Consensus       414 ~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  489 (709)
                      .+.|++++|+..|+.+...  -|+.    ..+..+..++...|++++|...|..+.+.+...|.                
T Consensus       154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~----------------  215 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK----------------  215 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc----------------
Confidence            4456666776666666663  3432    24445555556666666666666665544322221                


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873          490 LDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV  540 (709)
Q Consensus       490 ~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  540 (709)
                                     ....|-.+...+...|+.+.|...++++++..|+..
T Consensus       216 ---------------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        216 ---------------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             ---------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence                           122333344445566777777777777777766543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.64  E-value=0.15  Score=43.47  Aligned_cols=49  Identities=10%  Similarity=0.185  Sum_probs=32.4

Q ss_pred             CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 039873          434 ERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVG  482 (709)
Q Consensus       434 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~  482 (709)
                      ..|+..++.+++.+++..|++..|.++.+...+.++++-+..+|..|+.
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE   96 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            4566666777777776677777777777766666666656666665554

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.59  E-value=1.3  Score=39.87  Aligned_cols=90  Identities=13%  Similarity=0.024  Sum_probs=42.0

Q ss_pred             HHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHHc
Q 039873          342 VMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-----RDIITWNAMICGYSHH  416 (709)
Q Consensus       342 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~  416 (709)
                      .+..+....|+..+|...+++...--+..|..+.-.+.++....++...|...++++-+     +...+--.+...|.-.
T Consensus        94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~  173 (251)
T COG4700          94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQ  173 (251)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhc
Confidence            34444444455555555554444433444444444455555555555555555554432     1122233334444455


Q ss_pred             CChHHHHHHHHHHHH
Q 039873          417 GLGREALTLFQNMLA  431 (709)
Q Consensus       417 g~~~~A~~~~~~m~~  431 (709)
                      |++.+|..-|+....
T Consensus       174 g~~a~Aesafe~a~~  188 (251)
T COG4700         174 GKYADAESAFEVAIS  188 (251)
T ss_pred             CCchhHHHHHHHHHH
Confidence            555555555555444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.55  E-value=0.047  Score=41.54  Aligned_cols=62  Identities=15%  Similarity=0.115  Sum_probs=48.1

Q ss_pred             HHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhH
Q 039873          482 GLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTY  543 (709)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  543 (709)
                      .+|.+.+++++|.++++.+ ...|+ ...|......+...|+++.|.+.++++++..|+++...
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            5677888888888887754 33454 66777777888899999999999999999998775543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.34  E-value=0.026  Score=43.68  Aligned_cols=63  Identities=14%  Similarity=0.097  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhc----CCC---CchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          506 VVAWHTLLNASRVHQNYGFGRRIAEYILHM----DPN---DVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ..+++.+...+...|++++|+..+++++++    +++   -..++..++.+|...|++++|.+++++..+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            345666777777777777777777777653    222   245677888899999999999998887653

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.16  E-value=0.15  Score=51.40  Aligned_cols=63  Identities=13%  Similarity=0.061  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ..++..|...+.+.+++..|++..++.++++|+|.-...--+.+|...|.++.|+..|+++.+
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k  319 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK  319 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            345667777888999999999999999999999999999999999999999999999999976

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.88  E-value=5.2  Score=40.80  Aligned_cols=150  Identities=11%  Similarity=-0.048  Sum_probs=80.5

Q ss_pred             HHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHH--HhccCChhHHHHHHHHHHHhCCCCChhH-------------
Q 039873          310 AACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNS--AAGLSALRHGDLLHAHIEKSGFKEHLIV-------------  374 (709)
Q Consensus       310 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~~~a~~i~~~~~~~g~~~~~~~-------------  374 (709)
                      .++.-.|++++|...--..++..  ++ ..+...+++  +-...+.+.+...+.+.++.+  |+...             
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~  251 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV  251 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence            34556667776666555544321  11 112222222  123345555555555555433  22111             


Q ss_pred             HhHHHhHHHhcCCHHHHHHHHhhcCC-------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 039873          375 GNALINMYAKGGNIEAANKVFSDMRY-------RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLS  446 (709)
Q Consensus       375 ~~~li~~y~~~g~~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~  446 (709)
                      +..=.+...+.|++..|.+.|.+...       ++...|-.......+.|+.++|+.--++...  +.|..+ .|..-..
T Consensus       252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~  329 (486)
T KOG0550|consen  252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRAN  329 (486)
T ss_pred             HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHH
Confidence            11123445677888888888877652       3444565666667777888888877777655  333211 2222233


Q ss_pred             HHhccccHHHHHHHHHHHHH
Q 039873          447 ACGHLGLVQEGFYYLNHLMK  466 (709)
Q Consensus       447 a~~~~g~~~~a~~~~~~~~~  466 (709)
                      ++...+.|++|.+.++..++
T Consensus       330 c~l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  330 CHLALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            44556777777777777765

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=94.85  E-value=0.34  Score=41.35  Aligned_cols=78  Identities=18%  Similarity=0.215  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHH--------------HHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHH----h
Q 039873          438 HVTFVGVLSACGHLGLVQEGFYYLNHL--------------MKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMR----S  499 (709)
Q Consensus       438 ~~t~~~ll~a~~~~g~~~~a~~~~~~~--------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~  499 (709)
                      +.++..++.++++.|+++....+.+..              .......|+..+..+++.+|+..|++..|+++++    .
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~   81 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK   81 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            344445555555555555444444332              1123445666666777777777777777766643    2


Q ss_pred             CCCCCCHHHHHHHHHH
Q 039873          500 TPVKWDVVAWHTLLNA  515 (709)
Q Consensus       500 ~~~~pd~~~~~~ll~~  515 (709)
                      .+++-+...|..|+.=
T Consensus        82 Y~I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   82 YPIPIPKEFWRRLLEW   97 (126)
T ss_pred             cCCCCCHHHHHHHHHH
Confidence            2444446666666653

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.76  E-value=1.3  Score=44.02  Aligned_cols=192  Identities=11%  Similarity=0.103  Sum_probs=115.1

Q ss_pred             HHhHHHhHHHhcCCHHHHHHH-------HhhcCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCC---HHH
Q 039873          374 VGNALINMYAKGGNIEAANKV-------FSDMRYR--DIITWNAMICGYSHHGLGREALTLFQNMLA-AEERPN---HVT  440 (709)
Q Consensus       374 ~~~~li~~y~~~g~~~~A~~~-------f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd---~~t  440 (709)
                      ++..+.++.++.|.+++++..       +.+..+.  -..+|..+..++.+.-++.+++.+-+.-.. .|..|-   -..
T Consensus        45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~  124 (518)
T KOG1941|consen   45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV  124 (518)
T ss_pred             HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence            344455555566655554432       1111111  123555555666555555555555443322 233331   123


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHHHHH-------HHhCCCCCC-HHH
Q 039873          441 FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LEHYTCIVGLLSKAGLLDEAEKF-------MRSTPVKWD-VVA  508 (709)
Q Consensus       441 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~-------~~~~~~~pd-~~~  508 (709)
                      ..++-.|+...+.++++++.|+...+-..-..|    ..+|..|...|++..++++|.-+       .+..+++ | ..-
T Consensus       125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~k  203 (518)
T KOG1941|consen  125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLK  203 (518)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHH
Confidence            344566777778899999999988663222222    35788999999999999887765       3344432 2 222


Q ss_pred             HH-----HHHHHHHhcCCchHHHHHHHHHHhcC--CCCc----hhHHHHHHHhhhcCCchhHHHHHHHH
Q 039873          509 WH-----TLLNASRVHQNYGFGRRIAEYILHMD--PNDV----GTYILLSNMYAKEKRWDGVSKIRKLM  566 (709)
Q Consensus       509 ~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m  566 (709)
                      |.     -|.-+++..|.+..|.+..+++.++-  ..|.    ....+++++|-..|+.+.|..-++..
T Consensus       204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence            22     34458899999999999988876642  2233    34458899999999988887766654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=94.50  E-value=3.1  Score=39.21  Aligned_cols=160  Identities=14%  Similarity=0.142  Sum_probs=88.2

Q ss_pred             hHHHhcCCHHHHHHHHhhcCC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhc-
Q 039873          380 NMYAKGGNIEAANKVFSDMRY--RD----IITWNAMICGYSHHGLGREALTLFQNMLAAEERPN--HVTFVGVLSACGH-  450 (709)
Q Consensus       380 ~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~-  450 (709)
                      ..+...|++++|.+.|+.+..  |+    ..+.-.++.++.+.|++++|...|++..+.  -|+  ..-+...+.+.+. 
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence            345567778888888877763  21    234555677788888888888888887763  233  1222222222221 


Q ss_pred             ------------cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH--HHHHHH
Q 039873          451 ------------LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWH--TLLNAS  516 (709)
Q Consensus       451 ------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~--~ll~~~  516 (709)
                                  .+...+|...|+.+                +.-|-.+....+|...+..+.   +...-.  .+..-|
T Consensus        91 ~~~~~~~~~~~D~~~~~~A~~~~~~l----------------i~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y  151 (203)
T PF13525_consen   91 KQIPGILRSDRDQTSTRKAIEEFEEL----------------IKRYPNSEYAEEAKKRLAELR---NRLAEHELYIARFY  151 (203)
T ss_dssp             HHHHHHH-TT---HHHHHHHHHHHHH----------------HHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             HhCccchhcccChHHHHHHHHHHHHH----------------HHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence                        11223344444444                333444444455555443321   111111  133457


Q ss_pred             HhcCCchHHHHHHHHHHhcCCCCc---hhHHHHHHHhhhcCCchhHH
Q 039873          517 RVHQNYGFGRRIAEYILHMDPNDV---GTYILLSNMYAKEKRWDGVS  560 (709)
Q Consensus       517 ~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~  560 (709)
                      .+.|.+.-|..-++.+++.-|+..   .....++.+|.+.|..+.+.
T Consensus       152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            788899999999999999888654   34567788888888877443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.47  E-value=1.4  Score=46.06  Aligned_cols=154  Identities=14%  Similarity=0.044  Sum_probs=89.0

Q ss_pred             HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039873          415 HHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE  494 (709)
Q Consensus       415 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  494 (709)
                      +..+++.-+++-++..+  +.||..+-..+| |--....+.++.+++++..+. |-    ..+..- ......|.   ..
T Consensus       180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~lg~s-~~~~~~g~---~~  247 (539)
T PF04184_consen  180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASLGKS-QFLQHHGH---FW  247 (539)
T ss_pred             hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhhchh-hhhhcccc---hh
Confidence            34455666666666666  667765544443 223345678888888876552 10    000000 00001111   11


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC--CchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCc
Q 039873          495 KFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN--DVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVK  572 (709)
Q Consensus       495 ~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  572 (709)
                      +.+..-...|-..+-..|...+++.|+.++|.+.++.+++..|.  +......|+..|...+++.++..++.+-.+-...
T Consensus       248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp  327 (539)
T PF04184_consen  248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP  327 (539)
T ss_pred             hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence            11111111222333455666778889999999999888876654  4456778888888999999998888887655555


Q ss_pred             cCCceeEE
Q 039873          573 KEPGSSWT  580 (709)
Q Consensus       573 ~~~~~s~~  580 (709)
                      +...++|+
T Consensus       328 kSAti~YT  335 (539)
T PF04184_consen  328 KSATICYT  335 (539)
T ss_pred             chHHHHHH
Confidence            55555554

The molecular function of this protein is uncertain.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.34  E-value=2.3  Score=37.23  Aligned_cols=85  Identities=18%  Similarity=0.080  Sum_probs=43.7

Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCcc
Q 039873          139 SIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFR  218 (709)
Q Consensus       139 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~  218 (709)
                      ..++..+...+.......+++.+++.+ ..+....|.++..|++.. .+.....++.  ..+......++..+.+.+.++
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~   86 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE   86 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence            344555555555666666666666555 245556666777776543 2333333331  123333444555555555555


Q ss_pred             HHHHHHHHH
Q 039873          219 GGVEVLGKM  227 (709)
Q Consensus       219 ~A~~l~~~m  227 (709)
                      ++.-++.++
T Consensus        87 ~~~~l~~k~   95 (140)
T smart00299       87 EAVELYKKD   95 (140)
T ss_pred             HHHHHHHhh
Confidence            555555544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.32  E-value=0.09  Score=40.62  Aligned_cols=62  Identities=21%  Similarity=0.292  Sum_probs=34.2

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873          405 TWNAMICGYSHHGLGREALTLFQNMLAA--EER---PN-HVTFVGVLSACGHLGLVQEGFYYLNHLMK  466 (709)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  466 (709)
                      +++.+...|...|++++|++.|++....  ...   |+ ..++..+...+...|++++|.+++++..+
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4455555555555566665555554431  011   22 33566666667777777777777766543

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.32  E-value=0.56  Score=45.69  Aligned_cols=44  Identities=14%  Similarity=0.145  Sum_probs=24.2

Q ss_pred             HHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 039873          288 SNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYE  331 (709)
Q Consensus       288 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  331 (709)
                      .++..+|+++..   .|+.+-.-+...+.+.|++.+|...|+.|.+.
T Consensus       210 a~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         210 AKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            345555555443   23444444555666666666666666666654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.26  E-value=7.7  Score=40.12  Aligned_cols=71  Identities=14%  Similarity=0.131  Sum_probs=55.8

Q ss_pred             HHHhCCCCCC----HHHHHHHHHH--HHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873          496 FMRSTPVKWD----VVAWHTLLNA--SRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK  567 (709)
Q Consensus       496 ~~~~~~~~pd----~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  567 (709)
                      +++..++.|-    ...-|.|..|  .-.+|++.++.-...-+.++.| ++.+|..++-.+....++++|..++..++
T Consensus       446 fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  446 FITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             HHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            3555565543    3344555554  4578999999998888999999 78999999999999999999999998764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=94.21  E-value=5  Score=37.76  Aligned_cols=47  Identities=13%  Similarity=0.104  Sum_probs=22.4

Q ss_pred             HHHhccccHHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhcCCHHH
Q 039873          446 SACGHLGLVQEGFYYLNHLMKQIGIVPGL-EHYTCIVGLLSKAGLLDE  492 (709)
Q Consensus       446 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~  492 (709)
                      .-+.+.|.+..|..-++.+++++.-.+.. .....|+.+|.+.|..+.
T Consensus       149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~  196 (203)
T PF13525_consen  149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA  196 (203)
T ss_dssp             HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence            34555566666666666665543332221 233445555555555553

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.05  E-value=0.49  Score=49.06  Aligned_cols=62  Identities=13%  Similarity=0.078  Sum_probs=35.1

Q ss_pred             CChhHHhHHHhHHHhcCCHHHHHHHHhhcC--CCCh----hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873          370 EHLIVGNALINMYAKGGNIEAANKVFSDMR--YRDI----ITWNAMICGYSHHGLGREALTLFQNMLA  431 (709)
Q Consensus       370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~  431 (709)
                      .+...++.+..+|.+.|++++|...|++..  .||.    .+|..+..+|...|+.++|++.+++..+
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344455556666666666666666665543  2332    2356666666666666666666666555

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=93.93  E-value=0.67  Score=40.96  Aligned_cols=67  Identities=22%  Similarity=0.249  Sum_probs=30.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHH----HhhCCCCChH
Q 039873          408 AMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLM----KQIGIVPGLE  475 (709)
Q Consensus       408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~  475 (709)
                      .++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+.+.    ++.|+.|+..
T Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~  137 (146)
T PF03704_consen   67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE  137 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence            34444555555555555555555521 2244455555555555555555555555442    2345555543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.89  E-value=8.2  Score=39.10  Aligned_cols=283  Identities=14%  Similarity=0.087  Sum_probs=148.3

Q ss_pred             HHHHHHHHHh--CCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHh--cCCCcHHHHHHHHHHHHcCCCCchHH--HHHH
Q 039873          204 YNSVLNGLIE--NECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSA--SLKDLKLGLQVHSQMLKSDIEPDVFI--NSAM  277 (709)
Q Consensus       204 ~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l  277 (709)
                      |.+|-.|++-  .|+-..|.++-.+-.+. +.-|...+..++.+-.  -.|+.+.+++-|+-|...   |....  ...|
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL  160 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL  160 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence            3444444433  34444444443333211 3345555555555443  346777777777766542   22111  1112


Q ss_pred             HHHHHhcCChHHHHHHHHhccCC---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCCccc--hHHHHHHHhc--
Q 039873          278 ISMYGKCGKFSNAKKVFEGLETR---NVVLWTAMVAACFQNEYFEEALNLFCGMEYE-AIRPNEFT--FAVMLNSAAG--  349 (709)
Q Consensus       278 i~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t--~~~ll~~~~~--  349 (709)
                      .----+.|.-+.|+..-+..-..   -...|.+.+...+..|+++.|+++++.-+.. -+.+|..-  -..+|.+-+.  
T Consensus       161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~  240 (531)
T COG3898         161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL  240 (531)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence            22223556667666666554432   2356777888888888888888888776553 23444321  2223322211  


Q ss_pred             -cCChhHHHHHHHHHHHhCCCCChhHH-hHHHhHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChHHHHHH
Q 039873          350 -LSALRHGDLLHAHIEKSGFKEHLIVG-NALINMYAKGGNIEAANKVFSDMRY--RDIITWNAMICGYSHHGLGREALTL  425 (709)
Q Consensus       350 -~~~~~~a~~i~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~  425 (709)
                       ..+...++..-.+..+  +.||..-. -.-...|.+.|++.++-.+++.+-+  |....|.  +..+.+.|  +.++.-
T Consensus       241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~g--dta~dR  314 (531)
T COG3898         241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSG--DTALDR  314 (531)
T ss_pred             hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCC--CcHHHH
Confidence             1234444444444444  23443222 2234567788888888888877753  3333332  22233334  444444


Q ss_pred             HHHHHH-CCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHh
Q 039873          426 FQNMLA-AEERPNH-VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK-AGLLDEAEKFMRS  499 (709)
Q Consensus       426 ~~~m~~-~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~  499 (709)
                      +++... ..++||. .+...+..+-...|++..|..--+...   ...|....|..|.+.-.- .|+-.++...+.+
T Consensus       315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAq  388 (531)
T COG3898         315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQ  388 (531)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence            444432 1256653 456666667777777777766555542   446777777777766543 3777777776654

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.88  E-value=2  Score=37.52  Aligned_cols=65  Identities=17%  Similarity=0.218  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039873          440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA-GLLDEAEKFMRSTPVKWDVVAWHTLLNASR  517 (709)
Q Consensus       440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~  517 (709)
                      ....++..|.+.+.++++..++..+    |.      +...++.+... ++++.|.+++++..   +...|..++..+.
T Consensus        71 d~~~~~~~c~~~~l~~~~~~l~~k~----~~------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l  136 (140)
T smart00299       71 DIEKVGKLCEKAKLYEEAVELYKKD----GN------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL  136 (140)
T ss_pred             CHHHHHHHHHHcCcHHHHHHHHHhh----cC------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence            3344555666666666666555543    11      22233333333 66666776666532   4556666665543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.86  E-value=9.8  Score=44.24  Aligned_cols=152  Identities=16%  Similarity=0.110  Sum_probs=75.7

Q ss_pred             CCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccccHHHHHHHH
Q 039873          386 GNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSAC----GHLGLVQEGFYYL  461 (709)
Q Consensus       386 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~----~~~g~~~~a~~~~  461 (709)
                      |++++|+.-+.++.   ...|.-.+.---++|.+.+|+.++        +|+...+..+..+|    .....+++|.-.|
T Consensus       894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y  962 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY  962 (1265)
T ss_pred             HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            45555555555443   223444444445666666666653        45555554444433    3445555555555


Q ss_pred             HHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873          462 NHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAW--HTLLNASRVHQNYGFGRRIAEYILHMDPND  539 (709)
Q Consensus       462 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  539 (709)
                      +..-+          ..--+.+|-.+|+|.+|+.+-.++....|...-  ..|.+-+...++.-+|-++......- |  
T Consensus       963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-~-- 1029 (1265)
T KOG1920|consen  963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-P-- 1029 (1265)
T ss_pred             HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-H--
Confidence            44311          112345566667777777766665433343322  45666666666665555554443321 1  


Q ss_pred             chhHHHHHHHhhhcCCchhHHHHHHH
Q 039873          540 VGTYILLSNMYAKEKRWDGVSKIRKL  565 (709)
Q Consensus       540 ~~~~~~l~~~~~~~g~~~~a~~~~~~  565 (709)
                          .-....|.+...|++|.++-..
T Consensus      1030 ----~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1030 ----EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred             ----HHHHHHHhhHhHHHHHHHHHHh
Confidence                1122334455555555555443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.49  E-value=0.64  Score=38.96  Aligned_cols=90  Identities=13%  Similarity=0.031  Sum_probs=68.0

Q ss_pred             HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC----chhHHHHHHHhhhcCC
Q 039873          482 GLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND----VGTYILLSNMYAKEKR  555 (709)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~  555 (709)
                      -+++..|++++|++.|.+. .+-| +...||.-..+++-.|+.++|+.-+++++++--+.    -..|+.-+.+|-..|+
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            3567788888888887643 3333 47788888889999999999999888888865222    2357777888889999


Q ss_pred             chhHHHHHHHHHhCCC
Q 039873          556 WDGVSKIRKLMKVRKV  571 (709)
Q Consensus       556 ~~~a~~~~~~m~~~~~  571 (709)
                      -+.|+.-|....+-|-
T Consensus       131 dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  131 DDAARADFEAAAQLGS  146 (175)
T ss_pred             hHHHHHhHHHHHHhCC
Confidence            9999998888876553

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=93.46  E-value=6.9  Score=36.84  Aligned_cols=195  Identities=17%  Similarity=0.078  Sum_probs=113.2

Q ss_pred             hhHHhHHHhHHHhcCCHHHHHHHHhhcC-----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039873          372 LIVGNALINMYAKGGNIEAANKVFSDMR-----YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLS  446 (709)
Q Consensus       372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~  446 (709)
                      ..........+...+.+..+...+....     ......+..+...+...+.+.++.+.+.........+. ........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  137 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL  137 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence            3444555556666666666666665543     22334555555566666666777777776665332221 11112222


Q ss_pred             -HHhccccHHHHHHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcC
Q 039873          447 -ACGHLGLVQEGFYYLNHLMKQIGI--VPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD--VVAWHTLLNASRVHQ  520 (709)
Q Consensus       447 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd--~~~~~~ll~~~~~~g  520 (709)
                       .+...|.++.+...+..... ..-  ......+......+...++.++|...+... ...++  ...+..+...+...+
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence             56667777777777776632 111  112333334444456677777777776543 22223  456666666777777


Q ss_pred             CchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          521 NYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       521 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +.+.|...+.......|.....+..+...+...|.++++...+.....
T Consensus       217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            778888888888777776445566666666666667777777776654

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.46  E-value=0.76  Score=43.96  Aligned_cols=100  Identities=14%  Similarity=0.120  Sum_probs=79.5

Q ss_pred             HHHHHhhcC--CCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc-----------
Q 039873          391 ANKVFSDMR--YRDIITWNAMICGYSHH-----GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLG-----------  452 (709)
Q Consensus       391 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g-----------  452 (709)
                      ..+.|..+.  ++|-.+|-+++..+..+     +..+-....++.|.+-|+.-|..+|..||+.+-+..           
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F  132 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF  132 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence            456677776  68888999998888764     566667777899999999999999999998775432           


Q ss_pred             -----cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHH
Q 039873          453 -----LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLD  491 (709)
Q Consensus       453 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  491 (709)
                           .-+-++.++++|.. +|+.||.++-..|++++++.|..-
T Consensus       133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~  175 (406)
T KOG3941|consen  133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT  175 (406)
T ss_pred             hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence                 22346788888854 799999999999999999988744

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.21  E-value=2  Score=45.61  Aligned_cols=157  Identities=11%  Similarity=0.001  Sum_probs=97.7

Q ss_pred             HHhCCChhHHHHHHHH-hhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 039873          109 YLHNGFLLETLKLFKN-MVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVE  187 (709)
Q Consensus       109 ~~~~g~~~~A~~~~~~-m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~  187 (709)
                      ..-+++++++.++... -. -..++  ..-...+++-+-+.|..+.|.++-.         |+   ..-.+...++|+++
T Consensus       271 av~~~d~~~v~~~i~~~~l-l~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~  335 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNL-LPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD  335 (443)
T ss_dssp             HHHTT-HHH-----HHHHT-GGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred             HHHcCChhhhhhhhhhhhh-cccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence            3456677776665541 11 11122  3346667777777777777766532         22   22345566889999


Q ss_pred             HHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCC
Q 039873          188 MAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDI  267 (709)
Q Consensus       188 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~  267 (709)
                      .|.++.++..  +...|..|.....++|+.+-|.+.|.+...         |..++-.+...|+.+.-.++-+.....|-
T Consensus       336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~  404 (443)
T PF04053_consen  336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD  404 (443)
T ss_dssp             HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            9999887766  566899999999999999999999998753         66666677778888777777777776662


Q ss_pred             CCchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 039873          268 EPDVFINSAMISMYGKCGKFSNAKKVFEGL  297 (709)
Q Consensus       268 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m  297 (709)
                            +|....++.-.|++++..+++.+-
T Consensus       405 ------~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  405 ------INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             ------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence                  444555555667777777766543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.20  E-value=7.3  Score=40.00  Aligned_cols=72  Identities=17%  Similarity=0.109  Sum_probs=43.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHhccCC---CHhh----HHHHHHHHHH---cCCHhHHHHHHHHHHhCCCCCCccchHHHHH
Q 039873          276 AMISMYGKCGKFSNAKKVFEGLETR---NVVL----WTAMVAACFQ---NEYFEEALNLFCGMEYEAIRPNEFTFAVMLN  345 (709)
Q Consensus       276 ~li~~y~~~g~~~~A~~~~~~m~~~---~~~~----~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~  345 (709)
                      .|+-.|-...+++...++.+.+...   ++..    --...-++-+   .|+.++|++++..+....-.++..||..+..
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3444577777777777777777653   1111    1122334445   6788888888888665555666666665554


Q ss_pred             HH
Q 039873          346 SA  347 (709)
Q Consensus       346 ~~  347 (709)
                      .|
T Consensus       226 Iy  227 (374)
T PF13281_consen  226 IY  227 (374)
T ss_pred             HH
Confidence            43

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.13  E-value=3.3  Score=42.20  Aligned_cols=94  Identities=15%  Similarity=0.078  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhc
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKE  553 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  553 (709)
                      ++..|.-.|.+.+++.+|++..+.. ...| |.-..--=..+|...|+++.|+..|+++++++|+|-.+-.-|+.+-.+.
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            5666777888888998888876532 2333 4544444556888999999999999999999999988888888777776


Q ss_pred             CCchhH-HHHHHHHHhC
Q 039873          554 KRWDGV-SKIRKLMKVR  569 (709)
Q Consensus       554 g~~~~a-~~~~~~m~~~  569 (709)
                      .++.+. .++|..|-.+
T Consensus       339 ~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  339 REYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            666555 7888888754

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.01  E-value=18  Score=40.47  Aligned_cols=118  Identities=18%  Similarity=0.173  Sum_probs=69.1

Q ss_pred             HHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHH----HHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHh
Q 039873           71 TNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMT----WYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCS  146 (709)
Q Consensus        71 ~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~  146 (709)
                      ...-++++.+...++.|..+-..-.. |...-..+..    -+.+.|++++|..-|-+-.  .-+.|     ..+++-+.
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~-----s~Vi~kfL  408 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEP-----SEVIKKFL  408 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCCh-----HHHHHHhc
Confidence            34456677777777777777654332 2222222222    2456788888888877654  12333     23444444


Q ss_pred             cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 039873          147 RSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLP  197 (709)
Q Consensus       147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~  197 (709)
                      .......-..+++.+.+.|+. +...-+.|+..|.+.++.+.-.+..+...
T Consensus       409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~  458 (933)
T KOG2114|consen  409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD  458 (933)
T ss_pred             CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence            444455555566677777754 33445667788888888777776666554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.97  E-value=11  Score=37.63  Aligned_cols=97  Identities=8%  Similarity=0.033  Sum_probs=44.6

Q ss_pred             hHHHHHHHhccCChhH---HHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-C--ChhhHHHHHHHH
Q 039873          340 FAVMLNSAAGLSALRH---GDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-R--DIITWNAMICGY  413 (709)
Q Consensus       340 ~~~ll~~~~~~~~~~~---a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~--~~~~~~~li~~~  413 (709)
                      +..+..++...+..+.   +..+.+.+.. ..+..+.++-.-+....+.++.+.+.+++.+|.. .  ....+..++..+
T Consensus        87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i  165 (278)
T PF08631_consen   87 LRLLANAYLEWDTYESVEKALNALRLLES-EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI  165 (278)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            3444555555444333   3334444422 2222344444445555556666777766666652 1  123344433333


Q ss_pred             ---HHcCChHHHHHHHHHHHHCCCCCCH
Q 039873          414 ---SHHGLGREALTLFQNMLAAEERPNH  438 (709)
Q Consensus       414 ---~~~g~~~~A~~~~~~m~~~g~~pd~  438 (709)
                         ..+. ...|...+.++....+.|..
T Consensus       166 ~~l~~~~-~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  166 KQLAEKS-PELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             HHHHhhC-cHHHHHHHHHHHHHHhCCCh
Confidence               3322 34555555555544444443

It is also involved in sporulation [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.92  E-value=0.2  Score=31.26  Aligned_cols=32  Identities=25%  Similarity=0.221  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 039873          507 VAWHTLLNASRVHQNYGFGRRIAEYILHMDPN  538 (709)
Q Consensus       507 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  538 (709)
                      .+|..+...+...|++++|+..++++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            46777778888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.89  E-value=19  Score=40.35  Aligned_cols=43  Identities=7%  Similarity=0.085  Sum_probs=19.7

Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 039873          413 YSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFY  459 (709)
Q Consensus       413 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~  459 (709)
                      +.++.+++.++.+.+..-..    ++.-|..+|+-+++.+.++.-.+
T Consensus       715 ~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~  757 (933)
T KOG2114|consen  715 FQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYE  757 (933)
T ss_pred             HHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHH
Confidence            34444445554444443221    44455555555555554444333

>PRK11906 transcriptional regulator; Provisional

Probab=92.84  E-value=5.5  Score=41.68  Aligned_cols=143  Identities=9%  Similarity=0.019  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHh---------ccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 039873          419 GREALTLFQNMLA-AEERPNHV-TFVGVLSACG---------HLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA  487 (709)
Q Consensus       419 ~~~A~~~~~~m~~-~g~~pd~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~  487 (709)
                      .+.|+.+|.+... +.+.|+.. .|..+-..+.         ......+|.+.-+..++.  -.-|......+..+++-.
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence            4578888888872 23677643 3333222111         122344555555555431  123445555666666777


Q ss_pred             CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHH--HHHHHhhhcCCchhHHHHH
Q 039873          488 GLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYI--LLSNMYAKEKRWDGVSKIR  563 (709)
Q Consensus       488 g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~~~  563 (709)
                      |+++.|...|++. .+.|| ..+|......+.-.|+.++|.+.+++.++++|.....-.  ..+++|...+ .++|.+++
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~  430 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY  430 (458)
T ss_pred             cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence            7788888888744 45676 566666666667788888888888888888886543332  3444566554 45666555


Q ss_pred             H
Q 039873          564 K  564 (709)
Q Consensus       564 ~  564 (709)
                      -
T Consensus       431 ~  431 (458)
T PRK11906        431 Y  431 (458)
T ss_pred             h
Confidence            3

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=92.69  E-value=0.66  Score=44.35  Aligned_cols=99  Identities=16%  Similarity=0.106  Sum_probs=76.1

Q ss_pred             HHHHHHHhcc--CCCHhhHHHHHHHHHHc-----CCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccC----------
Q 039873          289 NAKKVFEGLE--TRNVVLWTAMVAACFQN-----EYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLS----------  351 (709)
Q Consensus       289 ~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~----------  351 (709)
                      ..++.|...+  ++|-.+|-+++..|...     +..+-....++.|.+-|+.-|..+|..+|+.+-+..          
T Consensus        52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~  131 (406)
T KOG3941|consen   52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV  131 (406)
T ss_pred             chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence            3456666666  57888888888877654     566767777888999999999999999998775532          


Q ss_pred             ------ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCC
Q 039873          352 ------ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGN  387 (709)
Q Consensus       352 ------~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~  387 (709)
                            .-+-+..++++|...|+.||..+-..|++++.+.+-
T Consensus       132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence                  234567888888888999998888888888887765

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.49  E-value=0.9  Score=43.70  Aligned_cols=91  Identities=16%  Similarity=0.167  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC---CchhHHH
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMRST-------PVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN---DVGTYIL  545 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~  545 (709)
                      .|+.-++.| +.|++.+|..-|...       ...||...|  |..++...|+++.|...|..+.+-.|+   -+..+.-
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            344444433 455566666655432       134555555  666777778888888888877775543   4567777


Q ss_pred             HHHHhhhcCCchhHHHHHHHHHhC
Q 039873          546 LSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       546 l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      |+.+..+.|+.++|..++++..++
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHH
Confidence            888888888888888888887654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.42  E-value=0.33  Score=30.07  Aligned_cols=32  Identities=34%  Similarity=0.373  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873          508 AWHTLLNASRVHQNYGFGRRIAEYILHMDPND  539 (709)
Q Consensus       508 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  539 (709)
                      .|..+...+...|++++|++.++++++++|+|
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            45666677777888888888888888877764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.23  E-value=4.9  Score=42.79  Aligned_cols=157  Identities=12%  Similarity=0.077  Sum_probs=88.0

Q ss_pred             HHhCCCccHHHHHHH-HHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHH
Q 039873          211 LIENECFRGGVEVLG-KMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSN  289 (709)
Q Consensus       211 ~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~  289 (709)
                      .+-.++++++.++.. .-.-..+  +..-...+++-+.+.|-.+.|.++-.         |.   ..-.+...++|+++.
T Consensus       271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~  336 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDI  336 (443)
T ss_dssp             HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHH
T ss_pred             HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHH
Confidence            344566666555554 1111111  12335556666666666666666532         22   223455667888888


Q ss_pred             HHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCC
Q 039873          290 AKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFK  369 (709)
Q Consensus       290 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~  369 (709)
                      |.++-++..  +...|..|.....++|+.+-|.+.|.+...         +..++-.+...|+.+.-.++.......|- 
T Consensus       337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-  404 (443)
T PF04053_consen  337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD-  404 (443)
T ss_dssp             HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred             HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence            888876665  566888888888888888888888876542         55566666667777777777666666551 


Q ss_pred             CChhHHhHHHhHHHhcCCHHHHHHHHhhc
Q 039873          370 EHLIVGNALINMYAKGGNIEAANKVFSDM  398 (709)
Q Consensus       370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~  398 (709)
                           +|....++.-.|++++..+++.+.
T Consensus       405 -----~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  405 -----INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             -----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             -----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence                 334444455557776666666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK11906 transcriptional regulator; Provisional

Probab=92.22  E-value=2.5  Score=44.09  Aligned_cols=117  Identities=7%  Similarity=-0.043  Sum_probs=84.4

Q ss_pred             cHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHh---------cCCHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHhcC
Q 039873          453 LVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSK---------AGLLDEAEKFMR-STPVKW-DVVAWHTLLNASRVHQ  520 (709)
Q Consensus       453 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~-~~~~~p-d~~~~~~ll~~~~~~g  520 (709)
                      ..+.|..+|.+......+.|+ ...|..+...+..         .....+|.++-+ ...+.| |+.....+..+....+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence            456777788887654466776 3344444433321         123344455433 333333 5777777777778888


Q ss_pred             CchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          521 NYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       521 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      +.+.|...|+++..++|+.+.+|...+....-+|+.++|.+.+++..+.
T Consensus       353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL  401 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL  401 (458)
T ss_pred             chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            8999999999999999999999999999999999999999999886543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.59  E-value=5.6  Score=38.83  Aligned_cols=121  Identities=15%  Similarity=0.069  Sum_probs=84.2

Q ss_pred             HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCch
Q 039873          447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHT---LLNASRVHQNYG  523 (709)
Q Consensus       447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~---ll~~~~~~g~~~  523 (709)
                      .....|+..++...|.......  .-+...--.|+..|...|+.++|..++..+|.+-...-|..   -|....+..+..
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            4456788888888888876532  22345666788899999999999999999876544444443   223333444443


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873          524 FGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK  570 (709)
Q Consensus       524 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  570 (709)
                      +...+ +.-...+|+|...-..|...|...|+.++|.+.+=.+..++
T Consensus       221 ~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d  266 (304)
T COG3118         221 EIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD  266 (304)
T ss_pred             CHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            33332 33445689999999999999999999999998877776543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.35  E-value=5  Score=39.67  Aligned_cols=152  Identities=14%  Similarity=0.139  Sum_probs=87.3

Q ss_pred             hcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHH--HHHhccccHHH
Q 039873          384 KGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV--TFVGVL--SACGHLGLVQE  456 (709)
Q Consensus       384 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll--~a~~~~g~~~~  456 (709)
                      -.|+.-+|...++++.+   .|..+|+--=.+|..+|+.+.-...+++.... ..||..  +|..=+  -++...|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            35677777777777663   47777777777888888887777777777653 234432  222222  23456777777


Q ss_pred             HHHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCchHHHHH
Q 039873          457 GFYYLNHLMKQIGIV-PGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWD-------VVAWHTLLNASRVHQNYGFGRRI  528 (709)
Q Consensus       457 a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd-------~~~~~~ll~~~~~~g~~~~a~~~  528 (709)
                      |.+.-++..+   +. .|.-.-.++...+--.|+.+|+.+++.+-.-.=+       ---|..-+ .+...+.++.|+++
T Consensus       194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleI  269 (491)
T KOG2610|consen  194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEI  269 (491)
T ss_pred             HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHH
Confidence            7766665432   22 2333445666677777888888888765431100       01111111 12233677778887


Q ss_pred             HHHHH--hcCCCCc
Q 039873          529 AEYIL--HMDPNDV  540 (709)
Q Consensus       529 ~~~~~--~~~p~~~  540 (709)
                      |+.-+  +++.+|.
T Consensus       270 yD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  270 YDREIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHHHhhccch
Confidence            76532  3444554

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=91.15  E-value=21  Score=37.04  Aligned_cols=81  Identities=14%  Similarity=0.190  Sum_probs=63.9

Q ss_pred             CchhHHHHHHHHHHccCChHHHHHHHhcCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHH
Q 039873           66 ENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNV---VSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVL  142 (709)
Q Consensus        66 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll  142 (709)
                      .|...|-.||.-|...|..++.++++++|..|-.   .+|..-|++-...+++.....+|.+.. ....  +...|..-|
T Consensus        40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL-~k~l--~ldLW~lYl  116 (660)
T COG5107          40 TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL-KKSL--NLDLWMLYL  116 (660)
T ss_pred             hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH-hhhc--cHhHHHHHH
Confidence            5889999999999999999999999999988643   468888888888889999999999887 4444  345555555


Q ss_pred             HHHhcCC
Q 039873          143 SSCSRSG  149 (709)
Q Consensus       143 ~~~~~~~  149 (709)
                      .-..+..
T Consensus       117 ~YIRr~n  123 (660)
T COG5107         117 EYIRRVN  123 (660)
T ss_pred             HHHHhhC
Confidence            5544444

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=90.88  E-value=12  Score=34.66  Aligned_cols=179  Identities=15%  Similarity=0.053  Sum_probs=102.3

Q ss_pred             cCCHHHHHHHHhhcC--CCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHH
Q 039873          385 GGNIEAANKVFSDMR--YRD-IITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYY  460 (709)
Q Consensus       385 ~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~  460 (709)
                      .|-..-|+--|.+..  .|+ ...||-+.--+...|+++.|.+.|+...+  +.|. ..++..-.-++--.|++.-|.+-
T Consensus        78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d  155 (297)
T COG4785          78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDD  155 (297)
T ss_pred             hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHH
Confidence            344444444444432  333 35677777778888888888888888877  3443 22332222344456788877766


Q ss_pred             HHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-
Q 039873          461 LNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND-  539 (709)
Q Consensus       461 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-  539 (709)
                      |...-+...-.|-...|--++   -+.-++.+|..-+.+--.+.|..-|+.-|-.+.--. +. -+.+++++.+...++ 
T Consensus       156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgk-iS-~e~l~~~~~a~a~~n~  230 (297)
T COG4785         156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGK-IS-EETLMERLKADATDNT  230 (297)
T ss_pred             HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhh-cc-HHHHHHHHHhhccchH
Confidence            655533323333333333222   233456677655433222456667776665443211 11 122333333322222 


Q ss_pred             ------chhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873          540 ------VGTYILLSNMYAKEKRWDGVSKIRKLMKVRK  570 (709)
Q Consensus       540 ------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  570 (709)
                            ..+|.-|+.-|...|..++|..+|+.....+
T Consensus       231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence                  3688999999999999999999999887644

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.04  E-value=3.2  Score=40.06  Aligned_cols=91  Identities=20%  Similarity=0.178  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh-HHHHHH
Q 039873          406 WNAMICGYSHHGLGREALTLFQNMLAAEERPN----HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL-EHYTCI  480 (709)
Q Consensus       406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l  480 (709)
                      |+.-+. +.+.|++.+|...|...++..  |+    ...+-.|..++...|++++|..+|..+.++++-.|.. +.+--|
T Consensus       145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         145 YNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            444433 334566777777777777642  22    1234456677777777777777777777766655543 455555


Q ss_pred             HHHHHhcCCHHHHHHHHHh
Q 039873          481 VGLLSKAGLLDEAEKFMRS  499 (709)
Q Consensus       481 i~~~~~~g~~~~A~~~~~~  499 (709)
                      .....+.|+.++|...+++
T Consensus       222 g~~~~~l~~~d~A~atl~q  240 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQ  240 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHH
Confidence            5566666666666655544

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=90.03  E-value=14  Score=33.21  Aligned_cols=134  Identities=12%  Similarity=0.071  Sum_probs=85.3

Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC--ChHHHHHHHHhcc
Q 039873          221 VEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCG--KFSNAKKVFEGLE  298 (709)
Q Consensus       221 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~  298 (709)
                      ++.++.+.+.++.|+...+..+++.+.+.|.+..-.    +++..++-+|.......+-.+....  -..-|.+.+.++.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~   89 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG   89 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence            455666777889999999999999999888766544    3445555555443333332222211  1233444444443


Q ss_pred             CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHh
Q 039873          299 TRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKS  366 (709)
Q Consensus       299 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~  366 (709)
                          ..+..++..+...|++-+|+++.++...    .+......++.+..+.++...-..++......
T Consensus        90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   90 ----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             ----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                3466678889999999999998877532    23444566788877777777666666666654

>PRK15331 chaperone protein SicA; Provisional

Probab=89.90  E-value=11  Score=33.57  Aligned_cols=85  Identities=11%  Similarity=-0.047  Sum_probs=41.6

Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH
Q 039873          412 GYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLL  490 (709)
Q Consensus       412 ~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  490 (709)
                      -+-+.|++++|..+|+-+...  .|. ..-+..|...|-..+.+++|...|.....-..-.|.  .+-.+...|...|+.
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~--p~f~agqC~l~l~~~  121 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR--PVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC--ccchHHHHHHHhCCH
Confidence            344556666666666665552  232 222333444444456666666666554331111222  222344555666666


Q ss_pred             HHHHHHHHhC
Q 039873          491 DEAEKFMRST  500 (709)
Q Consensus       491 ~~A~~~~~~~  500 (709)
                      ++|++.|+..
T Consensus       122 ~~A~~~f~~a  131 (165)
T PRK15331        122 AKARQCFELV  131 (165)
T ss_pred             HHHHHHHHHH
Confidence            6666665543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=89.39  E-value=21  Score=38.60  Aligned_cols=115  Identities=12%  Similarity=0.053  Sum_probs=70.9

Q ss_pred             cccHHHHHHHHHHHHHhhCCCCChHHHH-HHHHHHHhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCch
Q 039873          451 LGLVQEGFYYLNHLMKQIGIVPGLEHYT-CIVGLLSKAGLLDEAEKFMRSTPV-K-----WDVVAWHTLLNASRVHQNYG  523 (709)
Q Consensus       451 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~-~-----pd~~~~~~ll~~~~~~g~~~  523 (709)
                      ....+.+.+++..+.+.   -|+...|. --...+...|++++|.+.|++.-. +     -....+--+...+....+++
T Consensus       246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~  322 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE  322 (468)
T ss_pred             CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence            34566777777776543   34433332 223455667777888777774321 1     11223333445566778899


Q ss_pred             HHHHHHHHHHhcCCCCchhHH-HHHHHhhhcCCc-------hhHHHHHHHHHh
Q 039873          524 FGRRIAEYILHMDPNDVGTYI-LLSNMYAKEKRW-------DGVSKIRKLMKV  568 (709)
Q Consensus       524 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~  568 (709)
                      +|.+.+..+.+...-....|. ..+-.|...|+.       ++|.+++++...
T Consensus       323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            999999998887654444444 444455677888       788888887764

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=88.94  E-value=9.1  Score=33.21  Aligned_cols=56  Identities=18%  Similarity=0.134  Sum_probs=33.3

Q ss_pred             HhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873          485 SKAGLLDEAEKFMRST----PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV  540 (709)
Q Consensus       485 ~~~g~~~~A~~~~~~~----~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  540 (709)
                      .+.|++++|.+.|+.+    |..| ...+---|+.++-+.++++.|...+++.+++.|.++
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp   81 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP   81 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence            3556666666665543    2211 123334466677777777777777777777777544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=88.94  E-value=15  Score=38.67  Aligned_cols=97  Identities=10%  Similarity=0.121  Sum_probs=62.3

Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCC--HHHHHHHHHHHHh
Q 039873          443 GVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPV--KWD--VVAWHTLLNASRV  518 (709)
Q Consensus       443 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~pd--~~~~~~ll~~~~~  518 (709)
                      .+...+-+.|..++|.+.+..++++........+...|+..|...+.+.++..++.+..-  -|.  ...|+..+-..+.
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa  343 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA  343 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence            345556677888888888888877654333445666788888888888888888776531  133  4555554444443


Q ss_pred             cCC---------------chHHHHHHHHHHhcCCCC
Q 039873          519 HQN---------------YGFGRRIAEYILHMDPND  539 (709)
Q Consensus       519 ~g~---------------~~~a~~~~~~~~~~~p~~  539 (709)
                      -++               ...|.++..++.+.+|.-
T Consensus       344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV  379 (539)
T PF04184_consen  344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV  379 (539)
T ss_pred             hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence            332               123557777888877754

The molecular function of this protein is uncertain.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=88.91  E-value=12  Score=31.81  Aligned_cols=61  Identities=10%  Similarity=0.061  Sum_probs=30.2

Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhC
Q 039873          306 TAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSG  367 (709)
Q Consensus       306 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g  367 (709)
                      +.-+..+..+|+-+.-.++++++.+. -.++......+..||.+.|+..++.+++..+-+.|
T Consensus        90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            33445555566666655565555432 24444555555566666666666666665555555

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=88.88  E-value=23  Score=34.07  Aligned_cols=165  Identities=16%  Similarity=0.134  Sum_probs=86.0

Q ss_pred             HHhcCChHHHHHHHHhccCCC------HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccC---
Q 039873          281 YGKCGKFSNAKKVFEGLETRN------VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLS---  351 (709)
Q Consensus       281 y~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~---  351 (709)
                      -.+.|++++|.+.|+.+..+.      ..+--.++-++-+.+++++|+..+++..+.-..-...-|..-|.+.+..-   
T Consensus        44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~  123 (254)
T COG4105          44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID  123 (254)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence            346788999999998887532      23344566778889999999999988776433333344555555544221   


Q ss_pred             ----ChhHHHHHHHHH---HHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhh-H-HHHHHHHHHcCChHHH
Q 039873          352 ----ALRHGDLLHAHI---EKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIIT-W-NAMICGYSHHGLGREA  422 (709)
Q Consensus       352 ----~~~~a~~i~~~~---~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~-~-~~li~~~~~~g~~~~A  422 (709)
                          +...+++-+..+   ++. ++.+..              ..+|......+.  |... + -++..-|.+.|.+..|
T Consensus       124 ~~~rDq~~~~~A~~~f~~~i~r-yPnS~Y--------------a~dA~~~i~~~~--d~LA~~Em~IaryY~kr~~~~AA  186 (254)
T COG4105         124 DVTRDQSAARAAFAAFKELVQR-YPNSRY--------------APDAKARIVKLN--DALAGHEMAIARYYLKRGAYVAA  186 (254)
T ss_pred             ccccCHHHHHHHHHHHHHHHHH-CCCCcc--------------hhhHHHHHHHHH--HHHHHHHHHHHHHHHHhcChHHH
Confidence                112222222222   111 111111              111111111100  1011 1 1234567778888888


Q ss_pred             HHHHHHHHHCCCCCC---HHHHHHHHHHHhccccHHHHHHHHHH
Q 039873          423 LTLFQNMLAAEERPN---HVTFVGVLSACGHLGLVQEGFYYLNH  463 (709)
Q Consensus       423 ~~~~~~m~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~  463 (709)
                      ..-+++|++. .+-.   ...+-.+..++-..|..++|...-.-
T Consensus       187 ~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v  229 (254)
T COG4105         187 INRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKV  229 (254)
T ss_pred             HHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            8888888775 2211   22445555666667776666655443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.83  E-value=22  Score=33.81  Aligned_cols=86  Identities=14%  Similarity=0.096  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCCC-------CCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhc----CCCCchhHH
Q 039873          477 YTCIVGLLSKAGLLDEAEKFMRSTPV-------KWDV-VAWHTLLNASRVHQNYGFGRRIAEYILHM----DPNDVGTYI  544 (709)
Q Consensus       477 ~~~li~~~~~~g~~~~A~~~~~~~~~-------~pd~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~  544 (709)
                      +......|.+..+++||-..|.+-..       -|+. -.+-+.|-.+....++..|+..++.--++    +|++..+..
T Consensus       153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le  232 (308)
T KOG1585|consen  153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE  232 (308)
T ss_pred             HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence            33344455666666666555443210       0111 11222223334445667777777664443    355555666


Q ss_pred             HHHHHhhhcCCchhHHHHH
Q 039873          545 LLSNMYAKEKRWDGVSKIR  563 (709)
Q Consensus       545 ~l~~~~~~~g~~~~a~~~~  563 (709)
                      .|+.+| ..|+.+++.++.
T Consensus       233 nLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  233 NLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHh-ccCCHHHHHHHH
Confidence            666665 345556555544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=88.46  E-value=6.5  Score=42.40  Aligned_cols=54  Identities=17%  Similarity=-0.028  Sum_probs=29.8

Q ss_pred             HHHHHHhcCChHHHHHHHhhCCCCCcc---cHHHHH-HHHHhCCCc-------cHHHHHHHHHHh
Q 039873          176 LVELYTKCLDVEMAKRLLDLLPGYDVF---EYNSVL-NGLIENECF-------RGGVEVLGKMVS  229 (709)
Q Consensus       176 li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li-~~~~~~g~~-------~~A~~l~~~m~~  229 (709)
                      +.-.+.-.+++++|...|..+.+.+..   .|.-+. .++...|+.       ++|.++|.+...
T Consensus       311 l~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  311 LAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            334455566777777777776653322   122222 333445666       777777777643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.37  E-value=19  Score=32.43  Aligned_cols=114  Identities=17%  Similarity=0.192  Sum_probs=57.6

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873          405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL  484 (709)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  484 (709)
                      .|..+|..+.+.|++    ..+.++.+.++-||.......+-....  ....+.++=-.|.++.+.     .+..+++.+
T Consensus        31 L~~lli~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~-----~~~~iievL   99 (167)
T PF07035_consen   31 LYELLIDLLIRNGQF----SQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGT-----AYEEIIEVL   99 (167)
T ss_pred             HHHHHHHHHHHcCCH----HHHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhh-----hHHHHHHHH
Confidence            333344444444433    234445555667776665555533332  223344443344433221     456677888


Q ss_pred             HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 039873          485 SKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAE  530 (709)
Q Consensus       485 ~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~  530 (709)
                      ...|++-+|.++.++.+. -+...-.-++.+-...+|...=-.+++
T Consensus       100 L~~g~vl~ALr~ar~~~~-~~~~~~~~fLeAA~~~~D~~lf~~V~~  144 (167)
T PF07035_consen  100 LSKGQVLEALRYARQYHK-VDSVPARKFLEAAANSNDDQLFYAVFR  144 (167)
T ss_pred             HhCCCHHHHHHHHHHcCC-cccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence            888888888888877531 122222344555555544443333333

>PRK09687 putative lyase; Provisional

Probab=87.87  E-value=31  Score=34.34  Aligned_cols=75  Identities=8%  Similarity=0.030  Sum_probs=40.8

Q ss_pred             CChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039873          370 EHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACG  449 (709)
Q Consensus       370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~  449 (709)
                      ++..+-...+.++++.|+..-.-.+.+.+..++  ..-..+.++...|.. +|+..+.++...  .||...-...+.+|.
T Consensus       204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~  278 (280)
T PRK09687        204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK  278 (280)
T ss_pred             CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence            445555555566666666433333333333333  233566777777764 677777777663  446655555555554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.63  E-value=7.2  Score=38.60  Aligned_cols=160  Identities=13%  Similarity=0.056  Sum_probs=117.6

Q ss_pred             HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHH----HHHHhcCCH
Q 039873          415 HHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIV----GLLSKAGLL  490 (709)
Q Consensus       415 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~  490 (709)
                      -+|+..+|-..++++.+. .+.|-..+...=.+|...|+.+.-+..++++..  ...||...|..+=    -.+..+|-+
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence            478888898999998875 567888888888999999999998888888754  3467766655443    344689999


Q ss_pred             HHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC----CchhHHHHHHHhhhcCCchhHHHHHH
Q 039873          491 DEAEKFMRS-TPVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN----DVGTYILLSNMYAKEKRWDGVSKIRK  564 (709)
Q Consensus       491 ~~A~~~~~~-~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~  564 (709)
                      ++|++.-++ ..+.| |...-.+........|+..++.+...+-...-.+    -.-.|-..+-.|...+.++.|.++|+
T Consensus       192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            999998764 34443 4555567777788899999999887765443221    12345566667778899999999999


Q ss_pred             HHHhCCCccCCce
Q 039873          565 LMKVRKVKKEPGS  577 (709)
Q Consensus       565 ~m~~~~~~~~~~~  577 (709)
                      .=.-+.+.++.++
T Consensus       272 ~ei~k~l~k~Da~  284 (491)
T KOG2610|consen  272 REIWKRLEKDDAV  284 (491)
T ss_pred             HHHHHHhhccchh
Confidence            8765556665553

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=87.53  E-value=18  Score=31.39  Aligned_cols=112  Identities=13%  Similarity=0.024  Sum_probs=59.2

Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 039873          411 CGYSHHGLGREALTLFQNMLAAEERP---NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA  487 (709)
Q Consensus       411 ~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~  487 (709)
                      ....+.|++++|.+.|+.+... .+.   ....-..++.++.+.+++++|...++..++.+.-.|++ .|.....+++.-
T Consensus        18 ~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~   95 (142)
T PF13512_consen   18 QEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY   95 (142)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence            3345567777777777777654 121   23345556667777777777777777776655555543 233333333322


Q ss_pred             CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873          488 GLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND  539 (709)
Q Consensus       488 g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  539 (709)
                      ...+.++.-|-  ..+.|             .+....|...|+.+++.-|++
T Consensus        96 ~~~~~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   96 EQDEGSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HHhhhHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCC
Confidence            22221111111  11111             223456777788888888865

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=87.41  E-value=1.4  Score=27.94  Aligned_cols=26  Identities=19%  Similarity=0.272  Sum_probs=17.3

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHHH
Q 039873          405 TWNAMICGYSHHGLGREALTLFQNML  430 (709)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~~~~~m~  430 (709)
                      +|+.|...|.+.|++++|+++|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45667777777777777777777744

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=87.40  E-value=25  Score=34.30  Aligned_cols=56  Identities=13%  Similarity=-0.118  Sum_probs=51.0

Q ss_pred             HHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          513 LNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       513 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ...|...|.+.+|.++.++++.++|-+...+-.|+..|+..|+--.+.+-++++.+
T Consensus       286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            34788999999999999999999999999999999999999998888888888764

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.09  E-value=4.1  Score=39.90  Aligned_cols=76  Identities=11%  Similarity=0.051  Sum_probs=59.2

Q ss_pred             hhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 039873          372 LIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLA-----AEERPNHVTFVG  443 (709)
Q Consensus       372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~~~  443 (709)
                      ..++..++..+..+|+.+.+...++++..   -|...|..++.+|.+.|+...|+..|+++..     .|+.|-..+...
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            34567788888999999999988888764   3667899999999999999999999988765     467776665555


Q ss_pred             HHHH
Q 039873          444 VLSA  447 (709)
Q Consensus       444 ll~a  447 (709)
                      ...+
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            4444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.04  E-value=1.4  Score=27.28  Aligned_cols=32  Identities=25%  Similarity=0.299  Sum_probs=22.9

Q ss_pred             hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 039873          404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPN  437 (709)
Q Consensus       404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd  437 (709)
                      .+|..+...|...|++++|+..|++.++  +.|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence            3577777788888888888888888777  4554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=86.88  E-value=2.1  Score=28.57  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=23.0

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 039873          405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV  439 (709)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~  439 (709)
                      +|..+...|.+.|++++|.++|++..+  ..||..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~   35 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP   35 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence            466677777777777777777777777  355543

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.86  E-value=30  Score=33.25  Aligned_cols=228  Identities=16%  Similarity=0.241  Sum_probs=125.7

Q ss_pred             CChHHHHHHHHhccC----C---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHh---CCCCC--CccchHHHHHHHhccCC
Q 039873          285 GKFSNAKKVFEGLET----R---NVVLWTAMVAACFQNEYFEEALNLFCGMEY---EAIRP--NEFTFAVMLNSAAGLSA  352 (709)
Q Consensus       285 g~~~~A~~~~~~m~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p--d~~t~~~ll~~~~~~~~  352 (709)
                      ...++|..-|.+..+    +   .--+.-.||..+.+.|++++.++.|++|..   +.+.-  ...+.++++.-.+...+
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~  120 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN  120 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence            356666666665542    1   122334567777777777777777777742   22222  33456666665555555


Q ss_pred             hhHHHHHHHHHHHh-----CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--------CC-------hhhHHHHHHH
Q 039873          353 LRHGDLLHAHIEKS-----GFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--------RD-------IITWNAMICG  412 (709)
Q Consensus       353 ~~~a~~i~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~~-------~~~~~~li~~  412 (709)
                      .+.-..+++.-.+.     +-..--.+-+-|...|...|++.+-.+++.++..        .|       ...|..=|..
T Consensus       121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm  200 (440)
T KOG1464|consen  121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM  200 (440)
T ss_pred             hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence            55444444432211     1111222334566677777777777777776641        11       2356666777


Q ss_pred             HHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHhhCCC--CCh---HHHHHHH
Q 039873          413 YSHHGLGREALTLFQNMLAAE-ERPNHVTFVGVLSACG-----HLGLVQEGFYYLNHLMKQIGIV--PGL---EHYTCIV  481 (709)
Q Consensus       413 ~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~--p~~---~~~~~li  481 (709)
                      |....+-.+-..+|++...-. --|-+ ....++.-|.     +.|.+++|-.-|-++.+.+.-.  |..   --|-.|.
T Consensus       201 YT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA  279 (440)
T KOG1464|consen  201 YTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA  279 (440)
T ss_pred             hhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence            887777777777888766422 23333 3345666663     4677777765444444433222  221   2355566


Q ss_pred             HHHHhcCC----HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc
Q 039873          482 GLLSKAGL----LDEAEKFMRSTPVK--WDVVAWHTLLNASRVH  519 (709)
Q Consensus       482 ~~~~~~g~----~~~A~~~~~~~~~~--pd~~~~~~ll~~~~~~  519 (709)
                      +++.++|-    -.||      -|.+  |.......|+.+|..+
T Consensus       280 NMLmkS~iNPFDsQEA------KPyKNdPEIlAMTnlv~aYQ~N  317 (440)
T KOG1464|consen  280 NMLMKSGINPFDSQEA------KPYKNDPEILAMTNLVAAYQNN  317 (440)
T ss_pred             HHHHHcCCCCCccccc------CCCCCCHHHHHHHHHHHHHhcc
Confidence            77777662    1222      1333  4566778888888755

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=86.76  E-value=1.1  Score=27.76  Aligned_cols=31  Identities=19%  Similarity=0.210  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 039873          508 AWHTLLNASRVHQNYGFGRRIAEYILHMDPN  538 (709)
Q Consensus       508 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  538 (709)
                      +|..+...+...|++++|...+++.++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4555666677777777777777777777663

...

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=86.60  E-value=1.1  Score=28.42  Aligned_cols=23  Identities=17%  Similarity=0.075  Sum_probs=10.4

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHH
Q 039873          509 WHTLLNASRVHQNYGFGRRIAEY  531 (709)
Q Consensus       509 ~~~ll~~~~~~g~~~~a~~~~~~  531 (709)
                      |..|...|...|++++|++++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444444444444444444444

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=86.43  E-value=9.4  Score=30.54  Aligned_cols=86  Identities=19%  Similarity=0.273  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 039873          354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAE  433 (709)
Q Consensus       354 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  433 (709)
                      ++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||+..|-+|-.  .+.|..+++..-+.+|..+|
T Consensus        22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg   98 (115)
T TIGR02508        22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG   98 (115)
T ss_pred             HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence            4444444444443311 22222223445667899999999999999999999988765  46677777777788888776


Q ss_pred             CCCCHHHHHH
Q 039873          434 ERPNHVTFVG  443 (709)
Q Consensus       434 ~~pd~~t~~~  443 (709)
                       .|...+|..
T Consensus        99 -~p~lq~Faa  107 (115)
T TIGR02508        99 -DPRLQTFVA  107 (115)
T ss_pred             -CHHHHHHHH
Confidence             666556543

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=86.33  E-value=2  Score=36.16  Aligned_cols=54  Identities=7%  Similarity=-0.088  Sum_probs=50.8

Q ss_pred             HHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          515 ASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       515 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +....|+++.|++.|.+.+.+-|.+++.|+.-..+|--+|+.++|..-+++..+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            567889999999999999999999999999999999999999999999988876

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.28  E-value=2.4  Score=38.59  Aligned_cols=87  Identities=13%  Similarity=0.107  Sum_probs=62.7

Q ss_pred             HHhcCCHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCc
Q 039873          484 LSKAGLLDEAEKFMRST----PV---KWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRW  556 (709)
Q Consensus       484 ~~~~g~~~~A~~~~~~~----~~---~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  556 (709)
                      +.+.|++++|.+-+...    |-   +-..+.|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+..++
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~  184 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY  184 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence            44566666666554321    11   112445555556777888999999999999999997777777778899999999


Q ss_pred             hhHHHHHHHHHhCC
Q 039873          557 DGVSKIRKLMKVRK  570 (709)
Q Consensus       557 ~~a~~~~~~m~~~~  570 (709)
                      ++|.+-++.+.+..
T Consensus       185 eealeDyKki~E~d  198 (271)
T KOG4234|consen  185 EEALEDYKKILESD  198 (271)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999887753

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=86.19  E-value=36  Score=33.46  Aligned_cols=139  Identities=17%  Similarity=0.030  Sum_probs=57.7

Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhcCCHH
Q 039873          413 YSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL-EHYTCIVGLLSKAGLLD  491 (709)
Q Consensus       413 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~  491 (709)
                      ....|++.+|..+|....... .-+...-..+..++...|+++.|..++..+-.+  ..-+. .....-+..+.+.....
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHhcCC
Confidence            344555555555555555421 112233334445555555555555555443111  00000 01112233333333333


Q ss_pred             HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC--CCCchhHHHHHHHhhhcC
Q 039873          492 EAEKFMRSTPVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMD--PNDVGTYILLSNMYAKEK  554 (709)
Q Consensus       492 ~A~~~~~~~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g  554 (709)
                      +...+-+...-.| |...--.+...+...|+.+.|.+.+=.+++.+  -.|...--.|+.++.-.|
T Consensus       221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            3333333332233 23333344445555555555555444444432  223344444555444444

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=85.82  E-value=30  Score=32.22  Aligned_cols=92  Identities=14%  Similarity=0.002  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHhccC-----CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHH
Q 039873          271 VFINSAMISMYGKCGKFSNAKKVFEGLET-----RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLN  345 (709)
Q Consensus       271 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~  345 (709)
                      ..........+...+.+..+...+.....     .....+......+...+.+.++.+.+.........+. ........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  137 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL  137 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence            45556666666777777777666665432     2334555555666666667777777776665332221 11111111


Q ss_pred             -HHhccCChhHHHHHHHHH
Q 039873          346 -SAAGLSALRHGDLLHAHI  363 (709)
Q Consensus       346 -~~~~~~~~~~a~~i~~~~  363 (709)
                       .+...++++.+...+...
T Consensus       138 ~~~~~~~~~~~a~~~~~~~  156 (291)
T COG0457         138 GALYELGDYEEALELYEKA  156 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHH
Confidence             344555555555555554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=85.82  E-value=3  Score=36.90  Aligned_cols=54  Identities=7%  Similarity=0.062  Sum_probs=36.6

Q ss_pred             HhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCC
Q 039873          517 RVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRK  570 (709)
Q Consensus       517 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  570 (709)
                      ..+++.+.++.++.-+.-+.|..+..-..-++++...|+|.+|.++++.+.+..
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~   74 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA   74 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            345566777777777777777766666666677777777777777777765543

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=85.52  E-value=59  Score=35.27  Aligned_cols=182  Identities=13%  Similarity=0.050  Sum_probs=121.8

Q ss_pred             ChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039873          371 HLIVGNALINMYAKGGNIEAANKVFSDMRYRD---IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSA  447 (709)
Q Consensus       371 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a  447 (709)
                      +..+|+..++.-.+.|+.+.+.-+|++..-|-   ...|--.+.-....|+.+-|-.++....+--++-...+-..--.-
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            45677777777888899999999998876442   234555555555558888887777766654333222222222223


Q ss_pred             HhccccHHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 039873          448 CGHLGLVQEGFYYLNHLMKQIGIVPGL-EHYTCIVGLLSKAGLLDEAE---KFMRST-PVKWDVVAWHTLLN-----ASR  517 (709)
Q Consensus       448 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~pd~~~~~~ll~-----~~~  517 (709)
                      +-..|+.+.|..+++.+..++   |+. .+-.--+.+..+.|..+.+.   +++... +.+-+....+.+.-     .+.
T Consensus       376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~  452 (577)
T KOG1258|consen  376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK  452 (577)
T ss_pred             HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence            456789999999999987753   553 33344567778899999888   555432 22223333333332     244


Q ss_pred             hcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCC
Q 039873          518 VHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKR  555 (709)
Q Consensus       518 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  555 (709)
                      ..++.+.|..++.++.+..|++...|..+++.....+.
T Consensus       453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~  490 (577)
T KOG1258|consen  453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS  490 (577)
T ss_pred             HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence            56789999999999999999999999999998877663

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=85.51  E-value=50  Score=34.44  Aligned_cols=397  Identities=10%  Similarity=-0.001  Sum_probs=199.4

Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc---ccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHH
Q 039873          167 VFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDV---FEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAF  243 (709)
Q Consensus       167 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll  243 (709)
                      +.|...|-.||.-|...|..++-++++++|..|-+   ..|..-|++=....++.....+|.+-+......|.  |..-+
T Consensus        39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldL--W~lYl  116 (660)
T COG5107          39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDL--WMLYL  116 (660)
T ss_pred             chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhH--HHHHH
Confidence            44667788888888888888888888888877643   35777777777777777777788777665444333  22223


Q ss_pred             HHHhcCCCcH------HHHHHHHHHHH-cCCCC-chHHHHHHHHHHH---------hcCChHHHHHHHHhccCC---C--
Q 039873          244 GLSASLKDLK------LGLQVHSQMLK-SDIEP-DVFINSAMISMYG---------KCGKFSNAKKVFEGLETR---N--  301 (709)
Q Consensus       244 ~~~~~~~~~~------~a~~~~~~~~~-~g~~~-~~~~~~~li~~y~---------~~g~~~~A~~~~~~m~~~---~--  301 (709)
                      .--.+.+..-      ...+.++..+. .+++| ....|+..+...-         ...+++..++.+.++..-   |  
T Consensus       117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle  196 (660)
T COG5107         117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE  196 (660)
T ss_pred             HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence            2222222111      11233444333 34444 2334554444322         122455566666666531   1  


Q ss_pred             -----HhhHHHHHHH-----HHH--cCCHhHHHHHHHHHHh--CCCCC----CccchHHHHH-----------HHhcc--
Q 039873          302 -----VVLWTAMVAA-----CFQ--NEYFEEALNLFCGMEY--EAIRP----NEFTFAVMLN-----------SAAGL--  350 (709)
Q Consensus       302 -----~~~~~~li~~-----~~~--~g~~~~A~~~~~~m~~--~g~~p----d~~t~~~ll~-----------~~~~~--  350 (709)
                           -..|..=+..     ++.  .--+..|...+++...  .|+..    +..|++-+-+           -=...  
T Consensus       197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l  276 (660)
T COG5107         197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL  276 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence                 1112111111     111  1123456666666643  34322    2222222111           00000  


Q ss_pred             ---CC--hhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CChh------------------h
Q 039873          351 ---SA--LRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--RDII------------------T  405 (709)
Q Consensus       351 ---~~--~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~------------------~  405 (709)
                         ++  ....--+|.+++.. +.-...+|--.-..+...++-+.|+.....-..  |...                  +
T Consensus       277 ~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~  355 (660)
T COG5107         277 KLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGC  355 (660)
T ss_pred             ccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhh
Confidence               00  11111222222221 122233333333334455666777766654321  2210                  1


Q ss_pred             HHHHHHHHHH---cCChHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhC-CCCChH
Q 039873          406 WNAMICGYSH---HGLGREALT------LFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIG-IVPGLE  475 (709)
Q Consensus       406 ~~~li~~~~~---~g~~~~A~~------~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~  475 (709)
                      |..++..+.+   .+..+.+-.      ...+..-....-=...|...+++-.+..-++.|+.+|.+..+ .| +.+++.
T Consensus       356 fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vy  434 (660)
T COG5107         356 FDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVY  434 (660)
T ss_pred             HHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCccee
Confidence            1111111111   011111100      011111100111123455666777777778888999988866 46 667888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHH-hCCCCCCHHH-HHHHHHHHHhcCCchHHHHHHHHHHhcCC--CCchhHHHHHHHhh
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMR-STPVKWDVVA-WHTLLNASRVHQNYGFGRRIAEYILHMDP--NDVGTYILLSNMYA  551 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~-~~~~~pd~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~  551 (709)
                      .+++++.-++ .|+..-|..+|+ .|..-||... -+-.+.-+..-++-+.|..+|+...+.-.  .-...|..+++--+
T Consensus       435 i~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs  513 (660)
T COG5107         435 IYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYES  513 (660)
T ss_pred             eeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH
Confidence            8899888664 577778888876 3433456433 34556666677888888888886554211  12356777777777


Q ss_pred             hcCCchhHHHHHHHHHh
Q 039873          552 KEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       552 ~~g~~~~a~~~~~~m~~  568 (709)
                      .-|+...|..+-++|.+
T Consensus       514 ~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         514 MVGSLNNVYSLEERFRE  530 (660)
T ss_pred             hhcchHHHHhHHHHHHH
Confidence            77887777766666654

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=85.26  E-value=19  Score=36.09  Aligned_cols=63  Identities=17%  Similarity=0.131  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhcccc--HHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 039873          420 REALTLFQNMLAAEERPN-HV-TFVGVLSACGHLGL--VQEGFYYLNHLMKQIGIVPGLEHYTCIVGL  483 (709)
Q Consensus       420 ~~A~~~~~~m~~~g~~pd-~~-t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~  483 (709)
                      +.+..+|+.+...|+..+ .. ....+|.-+.....  +..+.++++.+.+ .|+++...+|..+.-+
T Consensus       160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLL  226 (297)
T ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHH
Confidence            456677888888787664 32 33334433322222  4466777777655 5888887777765543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=85.10  E-value=72  Score=35.94  Aligned_cols=160  Identities=13%  Similarity=0.021  Sum_probs=71.0

Q ss_pred             hHHHHHHHHH-hCCChhHHHHHHHHhhhCCCCCCChh----hHH-HHHHHHhcCCCchHHHHHHHHHHHhC----CCCch
Q 039873          101 SYSSLMTWYL-HNGFLLETLKLFKNMVSGDNLEPNEY----IFS-IVLSSCSRSGRGAEGRQCHGYVFKSG----LVFCK  170 (709)
Q Consensus       101 ~~~~li~~~~-~~g~~~~A~~~~~~m~~~~g~~p~~~----t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~  170 (709)
                      ++-.+...+. ...++++|...+++.. ...-+++..    ... .++..+.+.+ ...|....+..++.-    ..+-.
T Consensus        61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~-~l~~~~~~~d~k~~~~~ll~~i~~~~~-~~~a~~~l~~~I~~~~~~~~~~w~  138 (608)
T PF10345_consen   61 VRLRLASILLEETENLDLAETYLEKAI-LLCERHRLTDLKFRCQFLLARIYFKTN-PKAALKNLDKAIEDSETYGHSAWY  138 (608)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHhccCchhHH
Confidence            3444444443 4566666666666543 111112111    111 2223333333 333666555554421    12223


Q ss_pred             hHHHHH-HHHHHhcCChHHHHHHHhhCCC-------CCcccHHHHHHHHH--hCCCccHHHHHHHHHHhCCC--------
Q 039873          171 YVRNAL-VELYTKCLDVEMAKRLLDLLPG-------YDVFEYNSVLNGLI--ENECFRGGVEVLGKMVSGSV--------  232 (709)
Q Consensus       171 ~~~~~l-i~~y~~~g~~~~A~~~f~~~~~-------~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~--------  232 (709)
                      ..+.-+ +..+...++...|.+.++.+..       +-+...-.++.+.+  +.+.++++++.++++.....        
T Consensus       139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~  218 (608)
T PF10345_consen  139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV  218 (608)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence            333333 3333333666666666655432       11222333333333  34556677777766633211        


Q ss_pred             -CCChhhHHHHHHHHh--cCCCcHHHHHHHHHH
Q 039873          233 -RWDSVTYVNAFGLSA--SLKDLKLGLQVHSQM  262 (709)
Q Consensus       233 -~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~  262 (709)
                       .|-..+|..++..++  ..|+++.+.+.+.++
T Consensus       219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             223445666666554  456655665555444

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=85.03  E-value=46  Score=33.63  Aligned_cols=162  Identities=13%  Similarity=0.055  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHcCCHhHHHHHHHHHHh-CCCCCCc---cchHHHHHHHhccCChhHHHHHHHHHHHhCC-----CCChhH
Q 039873          304 LWTAMVAACFQNEYFEEALNLFCGMEY-EAIRPNE---FTFAVMLNSAAGLSALRHGDLLHAHIEKSGF-----KEHLIV  374 (709)
Q Consensus       304 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~---~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~-----~~~~~~  374 (709)
                      +|-.+..++-+..++.+++.+-+.-.. .|..|..   ....++-.+....+.++++.+.|+.+.+..-     .....+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            444455555555555555554433322 2333311   1223345556666677777777776655321     123456


Q ss_pred             HhHHHhHHHhcCCHHHHHHHHhhcC-------CCChh------hHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC
Q 039873          375 GNALINMYAKGGNIEAANKVFSDMR-------YRDII------TWNAMICGYSHHGLGREALTLFQNMLA----AEERPN  437 (709)
Q Consensus       375 ~~~li~~y~~~g~~~~A~~~f~~~~-------~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~pd  437 (709)
                      +-+|...|.+..++++|.-...+..       -.|+.      +.--|..++...|....|.+.-++..+    .|-+|-
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~  244 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL  244 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence            7778888888888777765544332       12221      122244566667777777766666433    232221


Q ss_pred             -HHHHHHHHHHHhccccHHHHHHHHHHHH
Q 039873          438 -HVTFVGVLSACGHLGLVQEGFYYLNHLM  465 (709)
Q Consensus       438 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~  465 (709)
                       ......+.+.|...|+.+.|+.-|+..+
T Consensus       245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  245 QARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence             1123344455666677777666665543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=84.68  E-value=17  Score=36.48  Aligned_cols=59  Identities=12%  Similarity=0.089  Sum_probs=26.5

Q ss_pred             hHHHHHHHHHHhCCCCCCc--cchHHHHHHHhccCC--hhHHHHHHHHHHHhCCCCChhHHhH
Q 039873          319 EEALNLFCGMEYEAIRPNE--FTFAVMLNSAAGLSA--LRHGDLLHAHIEKSGFKEHLIVGNA  377 (709)
Q Consensus       319 ~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~--~~~a~~i~~~~~~~g~~~~~~~~~~  377 (709)
                      +.+...|+.+...|+..+.  ...+.+|..+.....  ...+..+++.+.+.|++.....|..
T Consensus       160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~  222 (297)
T PF13170_consen  160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT  222 (297)
T ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence            3444555555555544422  222223322222221  2345556666666666655555443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=84.67  E-value=51  Score=33.88  Aligned_cols=66  Identities=17%  Similarity=0.096  Sum_probs=40.7

Q ss_pred             CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873          401 RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP---NHVTFVGVLSACGHLGLVQEGFYYLNHLMK  466 (709)
Q Consensus       401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  466 (709)
                      ....+|..++..+.+.|+++.|...+.++...+..+   +......-....-..|+-.+|...++....
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345577778888888888888888888777643111   112222223334456777777777766655

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=84.64  E-value=51  Score=33.87  Aligned_cols=65  Identities=6%  Similarity=0.115  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC----CCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          505 DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDP----NDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       505 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      ...+|..+...++++|+++.|...+.++...++    ..+.....-+......|+..+|...++.....
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC  213 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999988652    24566777788999999999999999888763

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=84.17  E-value=27  Score=31.98  Aligned_cols=59  Identities=17%  Similarity=0.156  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHH
Q 039873          406 WNAMICGYSHHGLGREALTLFQNMLAAEERPNHV--TFVGVLSACGHLGLVQEGFYYLNHL  464 (709)
Q Consensus       406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~  464 (709)
                      +..+..-|.+.|+.++|++.|.++......|...  .+..++..+...+++..+.....++
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3344444444455555555555544433333322  2334444444445555444444443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.55  E-value=9.7  Score=37.41  Aligned_cols=98  Identities=15%  Similarity=0.203  Sum_probs=72.7

Q ss_pred             hCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-C------C--hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 039873          366 SGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-R------D--IITWNAMICGYSHHGLGREALTLFQNMLAAEERP  436 (709)
Q Consensus       366 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~------~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  436 (709)
                      .|.+....+...++..-....+++++...+-++.. |      +  .++|-.++    ..=++++++.++..=++-|+-|
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~  133 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP  133 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence            35555666666677776767788888888777662 2      2  23333332    2346779999999989999999


Q ss_pred             CHHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 039873          437 NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQ  467 (709)
Q Consensus       437 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  467 (709)
                      |..|+..+++.+.+.+++.+|.++.-.|+..
T Consensus       134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            9999999999999999999998887777654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=83.45  E-value=3.9  Score=35.57  Aligned_cols=54  Identities=7%  Similarity=0.010  Sum_probs=44.4

Q ss_pred             hcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873          518 VHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKV  571 (709)
Q Consensus       518 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  571 (709)
                      ..++.++++.++..+.-+.|+.+..-..-+.++...|+|+||.++++...+.+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~   75 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG   75 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence            377888888888888888888888777888888888999999988888876553

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=82.97  E-value=5.2  Score=39.22  Aligned_cols=61  Identities=20%  Similarity=0.188  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          508 AWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       508 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ++..++..+...|+.+.+...++.+++.+|-+...|..++.+|...|+...|++.++.+.+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            4455666777778888888888888888888888888888888888888888888888875

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=82.25  E-value=1.1e+02  Score=36.09  Aligned_cols=110  Identities=16%  Similarity=0.100  Sum_probs=52.3

Q ss_pred             hHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 039873          380 NMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFY  459 (709)
Q Consensus       380 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~  459 (709)
                      +.--+.|.+.+|+.++..=.++-...|.+...-+.+.+.+++|.-+|+..-+         ..-.+.++-.+|+|.++..
T Consensus       916 n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~  986 (1265)
T KOG1920|consen  916 NYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALS  986 (1265)
T ss_pred             HHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHH
Confidence            3334455555555554332222223334444444445556666555544311         1123455666666666666


Q ss_pred             HHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 039873          460 YLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST  500 (709)
Q Consensus       460 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  500 (709)
                      +..++..  +-.--..+...|+.-+...++.-||-++....
T Consensus       987 ~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen  987 LAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred             HHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            6554421  11111122345666666666666666665544

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.24  E-value=25  Score=31.55  Aligned_cols=26  Identities=27%  Similarity=0.289  Sum_probs=13.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccC
Q 039873          274 NSAMISMYGKCGKFSNAKKVFEGLET  299 (709)
Q Consensus       274 ~~~li~~y~~~g~~~~A~~~~~~m~~  299 (709)
                      -.+|.-+-.|.|++.+|.+.|.++..
T Consensus       170 rEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         170 REALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHhHHHHhccchHHHHHHHHHHHc
Confidence            33444444455555555555555543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=82.14  E-value=36  Score=30.25  Aligned_cols=89  Identities=19%  Similarity=0.037  Sum_probs=55.2

Q ss_pred             HHHhccccHHHHHHHHHHHHHhhCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCch
Q 039873          446 SACGHLGLVQEGFYYLNHLMKQIGIVPGLE-HYTCIVGLLSKAGLLDEAEKFMRSTPV-KWDVVAWHTLLNASRVHQNYG  523 (709)
Q Consensus       446 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~-~pd~~~~~~ll~~~~~~g~~~  523 (709)
                      +.-...++.+++..++..+.   -+.|... +-..-...+.+.|++.+|+.+|+++.- .|....-.+|+.-|.....-.
T Consensus        18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            34456677888888877763   3455432 222334456788888888888887642 244455566777776665555


Q ss_pred             HHHHHHHHHHhcCC
Q 039873          524 FGRRIAEYILHMDP  537 (709)
Q Consensus       524 ~a~~~~~~~~~~~p  537 (709)
                      .=....+++++.++
T Consensus        95 ~Wr~~A~evle~~~  108 (160)
T PF09613_consen   95 SWRRYADEVLESGA  108 (160)
T ss_pred             HHHHHHHHHHhcCC
Confidence            55556666666665

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=82.04  E-value=95  Score=34.97  Aligned_cols=86  Identities=16%  Similarity=0.092  Sum_probs=38.7

Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhC-CCCChhHHhHHHhHHHh---
Q 039873          309 VAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSG-FKEHLIVGNALINMYAK---  384 (709)
Q Consensus       309 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~~---  384 (709)
                      ...+.-.|+++.|++.+.+  ..+...|.+.+...+.-+.-..-.+...   ..+.... -.+...-+..||..|.+   
T Consensus       265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~  339 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE  339 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred             HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence            3455678899999988876  2334556666666665543322221111   2222111 01111345667777765   


Q ss_pred             cCCHHHHHHHHhhcC
Q 039873          385 GGNIEAANKVFSDMR  399 (709)
Q Consensus       385 ~g~~~~A~~~f~~~~  399 (709)
                      ..+..+|.+.|--+.
T Consensus       340 ~td~~~Al~Y~~li~  354 (613)
T PF04097_consen  340 ITDPREALQYLYLIC  354 (613)
T ss_dssp             TT-HHHHHHHHHGGG
T ss_pred             ccCHHHHHHHHHHHH
Confidence            456777777766554

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.74  E-value=9.7  Score=37.42  Aligned_cols=97  Identities=13%  Similarity=0.173  Sum_probs=67.7

Q ss_pred             CchhHHHHHHHHHHccCChHHHHHHHhcCCC-------CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhH
Q 039873           66 ENVVLTNSLVNLYAKCNQISIARQLFDNMRQ-------RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIF  138 (709)
Q Consensus        66 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~  138 (709)
                      ....+-..++..-....+++++...+-+..+       |+...+ +.++.+. .-++++++.++..=. ..|+.||.+++
T Consensus        62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npI-qYGiF~dqf~~  138 (418)
T KOG4570|consen   62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPI-QYGIFPDQFTF  138 (418)
T ss_pred             cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcc-hhccccchhhH
Confidence            4455556666666667788888887766653       222221 2233332 336778888888777 78999999999


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHhC
Q 039873          139 SIVLSSCSRSGRGAEGRQCHGYVFKSG  165 (709)
Q Consensus       139 ~~ll~~~~~~~~~~~a~~~~~~~~~~g  165 (709)
                      ..++..+.+.+++..|.++...|+...
T Consensus       139 c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  139 CLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            999999999999888888877776654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.45  E-value=3.4  Score=25.33  Aligned_cols=27  Identities=26%  Similarity=0.425  Sum_probs=18.7

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873          405 TWNAMICGYSHHGLGREALTLFQNMLA  431 (709)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~~~~~m~~  431 (709)
                      .|..+...|.+.|++++|++.|++..+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            456666777777777777777777766

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=81.05  E-value=2.8  Score=41.42  Aligned_cols=112  Identities=14%  Similarity=0.089  Sum_probs=75.4

Q ss_pred             HHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCc
Q 039873          446 SACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNY  522 (709)
Q Consensus       446 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~  522 (709)
                      +-|.+.|.+++|+..|...+   .+.| +...+..-..+|.+..++..|+.-.... .+.. -.-.|.--..+-...|+.
T Consensus       105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence            46889999999999998764   4455 6777888888999999998887654432 1110 022333334444456788


Q ss_pred             hHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHH
Q 039873          523 GFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRK  564 (709)
Q Consensus       523 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~  564 (709)
                      .+|.+-++.+++++|.+.    -|-..|+......|+.-+.+
T Consensus       182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~K  219 (536)
T KOG4648|consen  182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIATK  219 (536)
T ss_pred             HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHhh
Confidence            999999999999999853    34455555555555544443

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=80.72  E-value=1e+02  Score=34.63  Aligned_cols=49  Identities=18%  Similarity=0.204  Sum_probs=35.2

Q ss_pred             CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCC
Q 039873           98 NVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSG  149 (709)
Q Consensus        98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~  149 (709)
                      +...| ++|--+.|.|++++|+++.....  .........|...++.+....
T Consensus       111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~--~~~~~~~~~f~~~l~~~~~s~  159 (613)
T PF04097_consen  111 GDPIW-ALIYYCLRCGDYDEALEVANENR--NQFQKIERSFPTYLKAYASSP  159 (613)
T ss_dssp             TEEHH-HHHHHHHTTT-HHHHHHHHHHTG--GGS-TTTTHHHHHHHHCTTTT
T ss_pred             CCccH-HHHHHHHhcCCHHHHHHHHHHhh--hhhcchhHHHHHHHHHHHhCC
Confidence            34456 46677889999999999996664  456667778889999987653

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=80.38  E-value=9.8  Score=37.75  Aligned_cols=46  Identities=20%  Similarity=0.141  Sum_probs=26.1

Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHH
Q 039873          412 GYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFY  459 (709)
Q Consensus       412 ~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~  459 (709)
                      -|.++|.+++|+..|..-..  +.| |.+++..-..||.+...+..|..
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~  152 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEE  152 (536)
T ss_pred             hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHH
Confidence            35556666666666665544  445 56666665666666555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	709
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-11
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-06
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 66.0 bits (159), Expect = 3e-11
 Identities = 36/291 (12%), Positives = 85/291 (29%), Gaps = 11/291 (3%)

Query: 332 AIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAA 391
              P E   A +L  A G  +L           ++          A          +  A
Sbjct: 87  PESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLA 146

Query: 392 NKVFSDMRYR-------DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGV 444
           + +      +        +  +NA++ G++  G  +E + +   +  A   P+ +++   
Sbjct: 147 HHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206

Query: 445 LSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKW 504
           L   G               M Q G+         ++    +A +L    K   +  +  
Sbjct: 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPP 266

Query: 505 DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRK 564
            +      +N S++ ++         Y     P      +    ++ +      V  + K
Sbjct: 267 QL---PPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEK 323

Query: 565 LMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIKP 615
                K  K    +   +R+     +         +++  +V E    + P
Sbjct: 324 PTLPSKEVKHARKTLKTLRDQWEKALCRALRE-TKNRLEREVYEGRFSLYP 373

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 50.2 bits (118), Expect = 2e-06
 Identities = 16/168 (9%), Positives = 49/168 (29%), Gaps = 8/168 (4%)

Query: 242 AFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETR- 300
               +     L +      Q  ++ +        A         +   A  +      + 
Sbjct: 98  LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157

Query: 301 ------NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLS-AL 353
                  + ++ A++    +   F+E + +   ++   + P+  ++A  L          
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217

Query: 354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYR 401
              +     + + G K   +    L++   +   ++A +KV       
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 42.5 bits (98), Expect = 5e-04
 Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 8/138 (5%)

Query: 174 NALVELYTKCLDVEMAKRLLDLLPGY-------DVFEYNSVLNGLIENECFRGGVEVLGK 226
            A  +       + +A  LL +  G         +  YN+V+ G      F+  V VL  
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190

Query: 227 MVSGSVRWDSVTYVNAF-GLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCG 285
           +    +  D ++Y  A   +    +D     +   QM +  ++      + ++S   +  
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250

Query: 286 KFSNAKKVFEGLETRNVV 303
                 KV         +
Sbjct: 251 VLKAVHKVKPTFSLPPQL 268

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 5e-08
 Identities = 91/637 (14%), Positives = 199/637 (31%), Gaps = 159/637 (24%)

Query: 154 GRQCHGY-----VFKSGLV--F-CKYVRNALVELYTKC-LD--------VEMAKRLLDLL 196
           G   + Y     VF+   V  F CK V++    + +K  +D        V    RL   L
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 197 -----PGYDVF-------EYNSVLNGLIENEC------FRGGVEVLGKMVSGSVRWDSVT 238
                     F        Y  +++  I+ E        R  +E   ++ + +  +    
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-- 128

Query: 239 YVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKV--FEG 296
                  + S     L L+     L+     +V I+     + G  GK   A  V     
Sbjct: 129 ------YNVSRLQPYLKLRQALLELRP--AKNVLIDG----VLG-SGKTWVALDVCLSYK 175

Query: 297 LETR--NVVLWTAMVAACFQNEYFEEALNLFCG-MEYEAIRPNEFTFAVMLNSAAGLSAL 353
           ++ +    + W  +   C   E   E L      ++      ++ +  + L   +  + L
Sbjct: 176 VQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAAN---KVFSDMRYRDIITWNAMI 410
           R        ++   ++  L+V   L+N+        A N   K+    R++ +   + + 
Sbjct: 235 RR------LLKSKPYENCLLV---LLNVQNAK-AWNAFNLSCKILLTTRFKQVT--DFLS 282

Query: 411 CGYSHH--------GLG-REALTLFQNML--AAEERPNHVTFVG--VLSACGHLGLVQEG 457
              + H         L   E  +L    L    ++ P  V       LS       +++G
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA--ESIRDG 340

Query: 458 F----YYLNHLMKQIG--IVPGLEHYTCIVGLLSKAGLLDEAEK---------FMRSTPV 502
                 + +    ++   I   L               L+ AE          F  S  +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNV-------------LEPAEYRKMFDRLSVFPPSAHI 387

Query: 503 KWDVVA--W------------HTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSN 548
              +++  W            + L   S V +       I+   ++++       + L N
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLE-----LKVKLEN 441

Query: 549 MYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFIS---GDSNHPESSQIYEK 605
            YA  +       +      +    +       +    +  I     +  HPE   ++  
Sbjct: 442 EYALHRSI-----VDHYNIPKTFDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 606 V----RELSAKIKPLGYVPD-VAAVLHDVEDEQK-EDYL-NHHSEKLAIAYALME-TPPT 657
           V    R L  KI+      +   ++L+ ++  +  + Y+ ++  +   +  A+++  P  
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555

Query: 658 APILVIKNLRMCDDCHSAVKLISKLTKRDIIVRDTNR 694
              L+    +  D    A+     + + + I  + ++
Sbjct: 556 EENLICS--KYTDLLRIAL-----MAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 7e-05
 Identities = 67/420 (15%), Positives = 117/420 (27%), Gaps = 146/420 (34%)

Query: 14  TR---CAPFLFKQNRAPPSVEDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVL 70
           TR      FL        S++     L    + K L L K +        +    E V+ 
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSL-LLKYLD----CRPQDLPRE-VLT 324

Query: 71  TNSLVNLYAKCNQIS-IARQLFDNMRQRNVVSYSSLMTW--YLHNGF--LLETLKLFKNM 125
           TN           +S IA  + D            L TW  + H     L   ++     
Sbjct: 325 TNPRR--------LSIIAESIRDG-----------LATWDNWKHVNCDKLTTIIE----- 360

Query: 126 VSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLD 185
            S + LEP EY                  R+     F    VF                 
Sbjct: 361 SSLNVLEPAEY------------------RKM----FDRLSVFPP--------------S 384

Query: 186 VEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSV---RWDSVTYVNA 242
             +   LL L+              +I+++       V+ K+   S+   +    T    
Sbjct: 385 AHIPTILLSLI-----------WFDVIKSDVM----VVVNKLHKYSLVEKQPKESTI--- 426

Query: 243 FGLSASLKDLKLGL--------QVHSQMLKSDIEPDVFINSAM----ISMY--------- 281
                S+  + L L         +H  ++     P  F +  +    +  Y         
Sbjct: 427 -----SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 282 ---GKCGKFSNAKKVFEGLETRNVVLW--TAMVAACFQNEYFEEALNLFCGME-YEA-IR 334
                  + +  + VF  L+ R    +    +             LN    ++ Y+  I 
Sbjct: 482 KNIEHPERMTLFRMVF--LDFR----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

Query: 335 PNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHL-IVGNALINMYAKGGNIEAANK 393
            N+  +  ++N+          D L    E     ++  ++  AL  M       E A+K
Sbjct: 536 DNDPKYERLVNAI--------LDFLPKIEENLICSKYTDLLRIAL--MAEDEAIFEEAHK 585

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 7/32 (21%)

Query: 604 EK--VRELSAKIKPLGYVPDVA---AVLHDVE 630
           EK  +++L A +K   Y  D A   A+   +E
Sbjct: 18  EKQALKKLQASLKL--YADDSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	709
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.9
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.9
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.89
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.86
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.86
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.82
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.79
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.77
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.76
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.75
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.74
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.73
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.72
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.72
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.71
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.7
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.7
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.69
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.68
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.67
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.66
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.66
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.66
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.64
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.62
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.61
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.59
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.53
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.52
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.5
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.5
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.47
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.46
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.42
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.41
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.4
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.4
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.4
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.39
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.39
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.39
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.39
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.39
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.38
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.36
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.35
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.35
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.33
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.33
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.32
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.32
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.31
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.3
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.28
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.27
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.27
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.27
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.22
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.22
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.21
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.2
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.19
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.17
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.15
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.14
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.14
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.11
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.05
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.02
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.98
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.95
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.94
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.9
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.85
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.85
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.83
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.8
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.79
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.76
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.72
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.71
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.7
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.7
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.69
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.65
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.64
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.61
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.59
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.58
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.57
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.56
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.56
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.54
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.53
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.49
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.48
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.48
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.46
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.46
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.46
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.46
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.43
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.43
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.43
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.41
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.4
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.4
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.4
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.4
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.35
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.35
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.35
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.32
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.32
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.31
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.3
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.27
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.22
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.22
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.21
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.21
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.2
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.2
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.19
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.18
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.17
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.15
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.15
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.14
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.12
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.11
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.07
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.05
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.03
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.01
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.99
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.99
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.99
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.97
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.94
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.94
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.93
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.93
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.93
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.92
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.92
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.92
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.91
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.91
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.88
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.88
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.86
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.84
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.82
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.8
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.79
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.79
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.77
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.75
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.74
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.73
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.72
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.71
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.7
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.7
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.68
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.65
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.65
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.64
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.61
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.58
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.58
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.56
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.55
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.54
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.52
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.44
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.41
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.38
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.35
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.34
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.22
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.13
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.12
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.07
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.97
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.92
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.89
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.84
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.73
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.71
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.7
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.69
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.67
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.6
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.57
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.44
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.44
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.28
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.07
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.76
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.7
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.51
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.15
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.89
1pc2_A	152	Mitochondria fission protein; unknown function; NM	94.52
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.26
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.18
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.91
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	92.41
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	91.83
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	91.34
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	91.1
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.72
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	90.65
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	89.02
2p58_C	116	Putative type III secretion protein YSCG; type III	88.78
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	88.63
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	87.76
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	86.8
2qx5_A	661	Nucleoporin NIC96; mRNA transport, nuclear pore co	86.04
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	85.5
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	85.47
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	84.76
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	84.58
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	82.67
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	82.37
2p58_C	116	Putative type III secretion protein YSCG; type III	82.05
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	81.44
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	81.1
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	81.07
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	80.21
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	80.09

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-42  Score=386.53  Aligned_cols=482  Identities=11%  Similarity=-0.023  Sum_probs=403.0

Q ss_pred             HHHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHH
Q 039873           76 NLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGR  155 (709)
Q Consensus        76 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~  155 (709)
                      ..+.+.|.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|.   +..|+..++..+..+|...|+++.|.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~  137 (597)
T 2xpi_A           61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVL---DITGNPNDAFWLAQVYCCTGDYARAK  137 (597)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHH---hhCCCchHHHHHHHHHHHcCcHHHHH
Confidence            345678889999999999999999999999999999999999999999997   25688899999999999999999999


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-------------------CcccHHHHHHHHHhCCC
Q 039873          156 QCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGY-------------------DVFEYNSVLNGLIENEC  216 (709)
Q Consensus       156 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~  216 (709)
                      .++..+...  .++..+++.++.+|.++|++++|.++|+++...                   ++.+|+.++.+|.+.|+
T Consensus       138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  215 (597)
T 2xpi_A          138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN  215 (597)
T ss_dssp             HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence            999987654  678899999999999999999999999954433                   47899999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhcCCCcHH--HHHH-HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 039873          217 FRGGVEVLGKMVSGSVRWDS-VTYVNAFGLSASLKDLKL--GLQV-HSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKK  292 (709)
Q Consensus       217 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~  292 (709)
                      +++|+++|++|.+.+  |+. ..+..+...+...+..+.  +..+ +..+...+......+++.++.+|.+.|++++|.+
T Consensus       216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  293 (597)
T 2xpi_A          216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED  293 (597)
T ss_dssp             HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence            999999999998853  443 344444443333322221  1111 4445555555566778888999999999999999


Q ss_pred             HHHhccC--CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 039873          293 VFEGLET--RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKE  370 (709)
Q Consensus       293 ~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~  370 (709)
                      +|+++.+  ++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.++...|+.++|.+++..+.+.. +.
T Consensus       294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~  371 (597)
T 2xpi_A          294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE  371 (597)
T ss_dssp             HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence            9999987  799999999999999999999999999999765 3477889999999999999999999999999765 66


Q ss_pred             ChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039873          371 HLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSA  447 (709)
Q Consensus       371 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a  447 (709)
                      +..+++.++.+|.++|++++|.++|+++.   ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  450 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ  450 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence            78899999999999999999999999875   3568899999999999999999999999999853 4578899999999


Q ss_pred             HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHh
Q 039873          448 CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-------PVKWD--VVAWHTLLNASRV  518 (709)
Q Consensus       448 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~pd--~~~~~~ll~~~~~  518 (709)
                      |.+.|++++|.++|+.+.+.  .+.+..+|+.++.+|.+.|++++|.++|+++       +..|+  ..+|..++.+|.+
T Consensus       451 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~  528 (597)
T 2xpi_A          451 HMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK  528 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999764  2346789999999999999999999998865       55787  7899999999999


Q ss_pred             cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          519 HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       519 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      .|++++|++.++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus       529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999874

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.8e-39  Score=362.42  Aligned_cols=479  Identities=8%  Similarity=-0.044  Sum_probs=410.5

Q ss_pred             CchhHHHHHHHHHHccCChHHHHHHHhcCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 039873           66 ENVVLTNSLVNLYAKCNQISIARQLFDNMR--QRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLS  143 (709)
Q Consensus        66 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~  143 (709)
                      +++..++.++..|.+.|++++|..+|++|.  .||..+|+.++.+|.+.|++++|+.+|+.+. .  .+++..+++.++.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~--~~~~~~~~~~l~~  158 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKED-L--YNRSSACRYLAAF  158 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC-G--GGTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh-c--cccchhHHHHHHH
Confidence            678899999999999999999999999986  3788899999999999999999999999885 2  4678899999999


Q ss_pred             HHhcCCCchHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc---ccHH
Q 039873          144 SCSRSGRGAEGRQCHGYVFKS---------------GLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDV---FEYN  205 (709)
Q Consensus       144 ~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~  205 (709)
                      ++.+.|++++|..+++.+...               |...+..+++.++.+|.+.|++++|.++|+++...++   ..|.
T Consensus       159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  238 (597)
T 2xpi_A          159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD  238 (597)
T ss_dssp             HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence            999999999999999843211               2234578999999999999999999999999875433   3455


Q ss_pred             HHHHHHHhCCCccHHHH--H-HHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 039873          206 SVLNGLIENECFRGGVE--V-LGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYG  282 (709)
Q Consensus       206 ~li~~~~~~g~~~~A~~--l-~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~  282 (709)
                      .+...+...+..+.+..  + +..+...+..++..+|+.++..|.+.|++++|.++++.+.+.  +++..+++.++.+|.
T Consensus       239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~  316 (597)
T 2xpi_A          239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF  316 (597)
T ss_dssp             HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred             HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence            55554444333322221  1 555655555666667888888999999999999999998876  588999999999999


Q ss_pred             hcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHH
Q 039873          283 KCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLL  359 (709)
Q Consensus       283 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i  359 (709)
                      +.|++++|..+|+++.+   .+..+|+.++.+|.+.|++++|.++|++|.+.. +.+..++..+...+.+.|++++|.++
T Consensus       317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  395 (597)
T 2xpi_A          317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY  395 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence            99999999999999864   467899999999999999999999999998542 44677889999999999999999999


Q ss_pred             HHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 039873          360 HAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP  436 (709)
Q Consensus       360 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  436 (709)
                      +..+.+.. +.+..+++.++.+|.+.|++++|.++|+++.   ..+..+|+.++.+|.+.|++++|+++|++|.+.. +.
T Consensus       396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~  473 (597)
T 2xpi_A          396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY  473 (597)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence            99999865 5568899999999999999999999999876   3478899999999999999999999999999853 44


Q ss_pred             CHHHHHHHHHHHhccccHHHHHHHHHHHHHhh---CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 039873          437 NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQI---GIVPG--LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAW  509 (709)
Q Consensus       437 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~  509 (709)
                      +..+|..+...+.+.|++++|.++|+.+.+..   +..|+  ..+|..++.+|.+.|++++|.+.++++ ...| +..+|
T Consensus       474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  553 (597)
T 2xpi_A          474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH  553 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence            68899999999999999999999999997743   66787  789999999999999999999999864 2334 69999


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873          510 HTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK  552 (709)
Q Consensus       510 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  552 (709)
                      ..+..+|...|++++|.+.++++++++|+++..+..|+++|..
T Consensus       554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE  596 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999998864

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=1.3e-27  Score=257.25  Aligned_cols=182  Identities=13%  Similarity=0.162  Sum_probs=127.2

Q ss_pred             hHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCC---------hhHHHHHHHHHHHhCCCCChhH
Q 039873          304 LWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSA---------LRHGDLLHAHIEKSGFKEHLIV  374 (709)
Q Consensus       304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~---------~~~a~~i~~~~~~~g~~~~~~~  374 (709)
                      .++.+|.+|++.|+.++|+++|++|.+.|+.||.+||+++|.+|+..+.         ++.|.++|+.|.+.|+.||..+
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            4566666677777777777777777777777777777777777665443         4566677777777777777777


Q ss_pred             HhHHHhHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 039873          375 GNALINMYAKGGNIEAANKVFSDMR----YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGH  450 (709)
Q Consensus       375 ~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~  450 (709)
                      ||+||++|++.|++++|.++|++|.    .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            7777777777777777777777665    367777777777777777777777777777777777777777777777777


Q ss_pred             cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHh
Q 039873          451 LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK  486 (709)
Q Consensus       451 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~  486 (709)
                      .|++++|.+++++|.+ .|..|+..+|+.+++.|..
T Consensus       188 ~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          188 TKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence            7777777777777654 4777777777777776654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=9e-28  Score=258.43  Aligned_cols=212  Identities=10%  Similarity=0.071  Sum_probs=170.7

Q ss_pred             HHHHHHHHHHhCCCCCChh-hHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 039873          219 GGVEVLGKMVSGSVRWDSV-TYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGL  297 (709)
Q Consensus       219 ~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m  297 (709)
                      .+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++       
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------   80 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------   80 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence            4455666777776665543 57778888888888888888888888888888888888888888877654321       


Q ss_pred             cCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhH
Q 039873          298 ETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNA  377 (709)
Q Consensus       298 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~  377 (709)
                                     .+.+..++|.++|++|.+.|+.||..||+++|.+|++.|+++.|.++++.|.+.|+.||..+||+
T Consensus        81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~  145 (501)
T 4g26_A           81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP  145 (501)
T ss_dssp             ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence                           23445678889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 039873          378 LINMYAKGGNIEAANKVFSDMR----YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLG  452 (709)
Q Consensus       378 li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g  452 (709)
                      ||.+|++.|++++|.++|++|.    .||..+|++||.+|++.|+.++|.++|++|.+.|+.|+..||+.++..++..+
T Consensus       146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~  224 (501)
T 4g26_A          146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV  224 (501)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence            9999999999999999999987    58999999999999999999999999999999999999999999999887654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=2.1e-24  Score=227.68  Aligned_cols=369  Identities=13%  Similarity=0.110  Sum_probs=244.3

Q ss_pred             HHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccH
Q 039873          143 SSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRG  219 (709)
Q Consensus       143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~  219 (709)
                      ..+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++....   .+..+|..+...|.+.|++++
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~   85 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            34455666666666666666553 22334445555556666666666666554322   244456666666666666666


Q ss_pred             HHHHHHHHHhCCCCCC-hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 039873          220 GVEVLGKMVSGSVRWD-SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLE  298 (709)
Q Consensus       220 A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~  298 (709)
                      |+..|+++.+.  .|+ ..+|..+..++...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|+++.
T Consensus        86 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  162 (388)
T 1w3b_A           86 AIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            66666665542  233 2245555555555555555555555555443 2233344445555555555555555555443


Q ss_pred             C---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHH
Q 039873          299 T---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVG  375 (709)
Q Consensus       299 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~  375 (709)
                      +   .+..+|+.+...|.+.|++++|+..|+++.                                   +.+ +.+...+
T Consensus       163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----------------------------------~~~-p~~~~~~  206 (388)
T 1w3b_A          163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV-----------------------------------TLD-PNFLDAY  206 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------------------------------HHC-TTCHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------------hcC-CCcHHHH
Confidence            2   233445555555555555555555555444                                   332 2334556


Q ss_pred             hHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 039873          376 NALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHL  451 (709)
Q Consensus       376 ~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~  451 (709)
                      ..+...|...|++++|...|++..   ..+..+|..+...|.+.|++++|++.|+++.+.  .|+ ..++..+..++.+.
T Consensus       207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~  284 (388)
T 1w3b_A          207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEK  284 (388)
T ss_dssp             HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHc
Confidence            666777777788888887777654   235678888888888999999999999998884  454 56788888889999


Q ss_pred             ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHH
Q 039873          452 GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIA  529 (709)
Q Consensus       452 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~  529 (709)
                      |++++|...|+.+.+.  .+.+...+..+...+.+.|++++|.+.++++ ...|+ ..+|..+...+...|++++|...+
T Consensus       285 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  362 (388)
T 1w3b_A          285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY  362 (388)
T ss_dssp             SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999988764  3456778889999999999999999998764 34454 788899999999999999999999


Q ss_pred             HHHHhcCCCCchhHHHHHHHhhhcCC
Q 039873          530 EYILHMDPNDVGTYILLSNMYAKEKR  555 (709)
Q Consensus       530 ~~~~~~~p~~~~~~~~l~~~~~~~g~  555 (709)
                      +++++++|+++..|..++.+|...|+
T Consensus       363 ~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          363 KEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            99999999999999999988877663

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=1.6e-23  Score=220.92  Aligned_cols=351  Identities=12%  Similarity=0.060  Sum_probs=301.3

Q ss_pred             HHHHHhCCCccHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 039873          208 LNGLIENECFRGGVEVLGKMVSGSVRWDS-VTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGK  286 (709)
Q Consensus       208 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  286 (709)
                      ...+.+.|++++|++.+.++.+.  .|+. ..+..+...+...|++++|...+...++.. +.+..++..+...|.+.|+
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence            45667788999999999888764  4543 455666667788899999999998888765 6678899999999999999


Q ss_pred             hHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCcc-chHHHHHHHhccCChhHHHHHHHH
Q 039873          287 FSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEF-TFAVMLNSAAGLSALRHGDLLHAH  362 (709)
Q Consensus       287 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~i~~~  362 (709)
                      +++|...|+++..   .+..+|..+...+.+.|++++|++.|+++.+.  .|+.. .+..+...+...|++++|.+.+..
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  160 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            9999999998763   35678999999999999999999999999874  46654 455666777888999999999999


Q ss_pred             HHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H
Q 039873          363 IEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-H  438 (709)
Q Consensus       363 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~  438 (709)
                      +++.. +.+..+++.+...|.+.|++++|...|+++..   .+...|..+...+...|++++|+..|++...  +.|+ .
T Consensus       161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~  237 (388)
T 1w3b_A          161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHA  237 (388)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCH
T ss_pred             HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCH
Confidence            99875 55678899999999999999999999998863   3567899999999999999999999999988  4564 6


Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 039873          439 VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PV-KWDVVAWHTLLNAS  516 (709)
Q Consensus       439 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~pd~~~~~~ll~~~  516 (709)
                      .++..+...+...|++++|...|+.+.+.  .+.+...|..+...|.+.|++++|.+.++++ .. .++..+|..+...+
T Consensus       238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  315 (388)
T 1w3b_A          238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence            78889999999999999999999998763  2234678999999999999999999998864 22 34688999999999


Q ss_pred             HhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          517 RVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       517 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ...|++++|...++++++..|++..++..++.+|.+.|++++|.+.++++.+
T Consensus       316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999976

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=9.6e-22  Score=215.30  Aligned_cols=437  Identities=9%  Similarity=-0.062  Sum_probs=246.2

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 039873          102 YSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYT  181 (709)
Q Consensus       102 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~  181 (709)
                      |......+.+.|++++|+..|+++. ..  .|+..+|..+..++...|+++.|...+..+++.. +.+...+..+..+|.
T Consensus         9 ~~~~g~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            9 LKDKGNQFFRNKKYDDAIKYYNWAL-EL--KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHH-HH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHH-hc--CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence            3344445555566666666666555 22  2455555555555555666666666666555553 223445555555555


Q ss_pred             hcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHH
Q 039873          182 KCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQV  258 (709)
Q Consensus       182 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  258 (709)
                      +.|++++|...|+++..   .+......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus        85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM  164 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred             HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence            55666555555554422   122223333333332222222222222222111111111111100000000011111111


Q ss_pred             HHHHHHcCC---------CCchHHHHHHHHHHHh---cCChHHHHHHHHhccC----------------C-CHhhHHHHH
Q 039873          259 HSQMLKSDI---------EPDVFINSAMISMYGK---CGKFSNAKKVFEGLET----------------R-NVVLWTAMV  309 (709)
Q Consensus       259 ~~~~~~~g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~~~~m~~----------------~-~~~~~~~li  309 (709)
                      ...+.....         +.+...+..+...+..   .|++++|...|+++.+                + +...|..+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (514)
T 2gw1_A          165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG  244 (514)
T ss_dssp             HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence            111110000         1123334444444443   6777777777776544                1 245677777


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHH
Q 039873          310 AACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIE  389 (709)
Q Consensus       310 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~  389 (709)
                      ..+...|++++|+..|+++.+..  |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|+++
T Consensus       245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  321 (514)
T 2gw1_A          245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD  321 (514)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence            77788888888888888777643  335566666777777777777777777777654 445667777777788888888


Q ss_pred             HHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873          390 AANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMK  466 (709)
Q Consensus       390 ~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  466 (709)
                      +|...|+++.   ..+...|..+...|...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+.+
T Consensus       322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  400 (514)
T 2gw1_A          322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE  400 (514)
T ss_dssp             HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8888777654   2355677777777888888888888888877642 22455677777777788888888888877765


Q ss_pred             hhCCCCC----hHHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 039873          467 QIGIVPG----LEHYTCIVGLLSK---AGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDP  537 (709)
Q Consensus       467 ~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  537 (709)
                      ...-.++    ...+..+...|.+   .|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|
T Consensus       401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  480 (514)
T 2gw1_A          401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR  480 (514)
T ss_dssp             HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence            4333333    3377777777877   78888888777643 1223 466777777778888888888888888888887


Q ss_pred             CCchhHHHH
Q 039873          538 NDVGTYILL  546 (709)
Q Consensus       538 ~~~~~~~~l  546 (709)
                      +++..+..+
T Consensus       481 ~~~~~~~~~  489 (514)
T 2gw1_A          481 TMEEKLQAI  489 (514)
T ss_dssp             SHHHHHHHH
T ss_pred             ccHHHHHHH
Confidence            766555544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.90  E-value=6.9e-21  Score=204.82  Aligned_cols=338  Identities=13%  Similarity=0.029  Sum_probs=239.8

Q ss_pred             CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 039873          200 DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMIS  279 (709)
Q Consensus       200 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  279 (709)
                      ++..|..+...|.+.|++++|+.+|+++.+.. ..+..++..+..++...|++++|...+..+++.+ +.+..++..+..
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  102 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence            34456666667777777777777777766532 2245566666666667777777777777766654 445666777777


Q ss_pred             HHHhcCChHHHHHHHHhccCC---CH---hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCCh
Q 039873          280 MYGKCGKFSNAKKVFEGLETR---NV---VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSAL  353 (709)
Q Consensus       280 ~y~~~g~~~~A~~~~~~m~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~  353 (709)
                      +|.+.|++++|...|+++.+.   +.   ..|..++..+...+...                       +...+...|++
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------------------~a~~~~~~~~~  159 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS-----------------------QALNAFGSGDY  159 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHcCCH
Confidence            777777777777777776542   22   55555544422211111                       11223334555


Q ss_pred             hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 039873          354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNML  430 (709)
Q Consensus       354 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  430 (709)
                      +.|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++.   ..+..+|..+...|...|++++|++.|+++.
T Consensus       160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  238 (450)
T 2y4t_A          160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL  238 (450)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55555555555443 4456677778888888888888888888775   3567889999999999999999999999998


Q ss_pred             HCCCCCCHHH-HHHH------------HHHHhccccHHHHHHHHHHHHHhhCCCCC--hHHHHHHHHHHHhcCCHHHHHH
Q 039873          431 AAEERPNHVT-FVGV------------LSACGHLGLVQEGFYYLNHLMKQIGIVPG--LEHYTCIVGLLSKAGLLDEAEK  495 (709)
Q Consensus       431 ~~g~~pd~~t-~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~  495 (709)
                      .  ..|+... +..+            ...+.+.|++++|...|+.+.+..+-.|.  ..++..++.++.+.|++++|.+
T Consensus       239 ~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~  316 (450)
T 2y4t_A          239 K--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR  316 (450)
T ss_dssp             H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             H--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            7  4565443 3333            67889999999999999999764222222  4588999999999999999999


Q ss_pred             HHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHH------------HHhhhcC-----Cc
Q 039873          496 FMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLS------------NMYAKEK-----RW  556 (709)
Q Consensus       496 ~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~  556 (709)
                      .++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..+.            +.|...|     +.
T Consensus       317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~  396 (450)
T 2y4t_A          317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK  396 (450)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence            98864 3345 5899999999999999999999999999999999999999888            5577667     44


Q ss_pred             hhHHHHHHH
Q 039873          557 DGVSKIRKL  565 (709)
Q Consensus       557 ~~a~~~~~~  565 (709)
                      +++.+.+++
T Consensus       397 ~~~~~~y~~  405 (450)
T 2y4t_A          397 QEIIKAYRK  405 (450)
T ss_dssp             THHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555666654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.2e-20  Score=206.61  Aligned_cols=393  Identities=9%  Similarity=-0.079  Sum_probs=313.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 039873          170 KYVRNALVELYTKCLDVEMAKRLLDLLPG--YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSA  247 (709)
Q Consensus       170 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~  247 (709)
                      ...+..+...|.+.|++++|...|+++..  ||...|..+..+|.+.|++++|+..|+++.+.+. .+..++..+..++.
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH
Confidence            34566777889999999999999998754  6888899999999999999999999999987542 24568888999999


Q ss_pred             cCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHH--------------------------------
Q 039873          248 SLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFE--------------------------------  295 (709)
Q Consensus       248 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~--------------------------------  295 (709)
                      ..|++++|.+.+..+.+.+ +++......++..+.+......+.+.+.                                
T Consensus        85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS  163 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred             HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence            9999999999999999886 3444444444444444322222222221                                


Q ss_pred             ------hcc---------CC-CHhhHHHHHHHHHH---cCCHhHHHHHHHHHHh-----CCCCCC--------ccchHHH
Q 039873          296 ------GLE---------TR-NVVLWTAMVAACFQ---NEYFEEALNLFCGMEY-----EAIRPN--------EFTFAVM  343 (709)
Q Consensus       296 ------~m~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~pd--------~~t~~~l  343 (709)
                            ...         .+ +...|......+..   .|++++|+..|+++.+     ..-.|+        ..++..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (514)
T 2gw1_A          164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT  243 (514)
T ss_dssp             HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence                  100         01 13344444444444   8999999999999987     322232        3466777


Q ss_pred             HHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChH
Q 039873          344 LNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGR  420 (709)
Q Consensus       344 l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~  420 (709)
                      ...+...|+++.|...+..+.+....  ..++..+...|...|++++|...|+++..   .+...|..+...|...|+++
T Consensus       244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  321 (514)
T 2gw1_A          244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD  321 (514)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence            88889999999999999999987633  88889999999999999999999998763   46778999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 039873          421 EALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST  500 (709)
Q Consensus       421 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  500 (709)
                      +|+..|++..... +.+..++..+...+...|++++|...++.+.+..  +.+...+..+...|.+.|++++|.+.+++.
T Consensus       322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  398 (514)
T 2gw1_A          322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLA  398 (514)
T ss_dssp             HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999853 3356788889999999999999999999987742  334678899999999999999999998754


Q ss_pred             ----CCCCC----HHHHHHHHHHHHh---cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          501 ----PVKWD----VVAWHTLLNASRV---HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       501 ----~~~pd----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                          +..++    ..+|..+...+..   .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus       399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence                21222    4488999999999   999999999999999999999999999999999999999999999999864

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.86  E-value=2e-19  Score=193.45  Aligned_cols=363  Identities=9%  Similarity=-0.035  Sum_probs=202.7

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 039873          169 CKYVRNALVELYTKCLDVEMAKRLLDLLPG---YDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGL  245 (709)
Q Consensus       169 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~  245 (709)
                      +...+..+...|.+.|++++|...|+++..   .+..+|..+...|.+.|++++|+..|+++.+.+. .+..++..+...
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~  103 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHL  103 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHH
Confidence            345556666666666666666666665432   3455666666666677777777777776665431 134556666666


Q ss_pred             HhcCCCcHHHHHHHHHHHHcCCCCch---HHHHHHH------------HHHHhcCChHHHHHHHHhccC---CCHhhHHH
Q 039873          246 SASLKDLKLGLQVHSQMLKSDIEPDV---FINSAMI------------SMYGKCGKFSNAKKVFEGLET---RNVVLWTA  307 (709)
Q Consensus       246 ~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li------------~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~  307 (709)
                      +...|++++|.+.++.+++.. +.+.   ..+..++            ..|.+.|++++|...|+++.+   .+...|..
T Consensus       104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  182 (450)
T 2y4t_A          104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL  182 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            667777777777777666543 2233   4444443            346666666666666666542   34556666


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCC
Q 039873          308 MVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGN  387 (709)
Q Consensus       308 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~  387 (709)
                      +...|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +.+...+..+...      
T Consensus       183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~------  254 (450)
T 2y4t_A          183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV------  254 (450)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH------
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH------
Confidence            6666666666666666666665431 1233444445555555555555555555554432 1122222221000      


Q ss_pred             HHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccccHHHHHHHHH
Q 039873          388 IEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-----HVTFVGVLSACGHLGLVQEGFYYLN  462 (709)
Q Consensus       388 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~t~~~ll~a~~~~g~~~~a~~~~~  462 (709)
                                   .....+..+...|...|++++|++.|+++..  +.|+     ...+..+...+.+.|++++|...++
T Consensus       255 -------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  319 (450)
T 2y4t_A          255 -------------KKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS  319 (450)
T ss_dssp             -------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             -------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                         0000112225666677777777777777766  3444     2355566666677777777777777


Q ss_pred             HHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----Cch
Q 039873          463 HLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNA------------SRVHQ-----NYG  523 (709)
Q Consensus       463 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~------------~~~~g-----~~~  523 (709)
                      .+.+.  .+.+...|..+..+|.+.|++++|.+.+++. ...|+ ...|..+..+            |...|     +.+
T Consensus       320 ~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~  397 (450)
T 2y4t_A          320 EVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ  397 (450)
T ss_dssp             HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred             HHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence            66542  1224566677777777777777777776643 33444 4444444422            22333     567


Q ss_pred             HHHHHHHH-HHhcCCCCch----------hHHHHHHHhhhcCCchh
Q 039873          524 FGRRIAEY-ILHMDPNDVG----------TYILLSNMYAKEKRWDG  558 (709)
Q Consensus       524 ~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~  558 (709)
                      ++.+.+++ .++..|++..          .+..+..+|...|+.++
T Consensus       398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~  443 (450)
T 2y4t_A          398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM  443 (450)
T ss_dssp             HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred             HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            77888886 6777776422          34445555555554443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.86  E-value=7.7e-20  Score=201.43  Aligned_cols=353  Identities=10%  Similarity=0.025  Sum_probs=195.7

Q ss_pred             chHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 039873          100 VSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVEL  179 (709)
Q Consensus       100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  179 (709)
                      ..|..+...+.+.|++++|+..|+++.+ . .+.+..++..+..++...|+++.|.+.+..+++.. +.+...+..+...
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  102 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIE-L-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHh-h-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            4566677778888888888888888762 2 12356777777777888888888888888888775 3356677778888


Q ss_pred             HHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhC------CCCCChhhHHHHHHHHhcCCCcH
Q 039873          180 YTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSG------SVRWDSVTYVNAFGLSASLKDLK  253 (709)
Q Consensus       180 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~  253 (709)
                      |.+.|++++|...|+.+ ..+....+..+..+...+...+|+..++++...      ...|+...+...+    ...+.+
T Consensus       103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~  177 (537)
T 3fp2_A          103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF----GIFDSH  177 (537)
T ss_dssp             HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH----HTSCHH
T ss_pred             HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH----HhcChH
Confidence            88888888888888643 223333334455556666667788888887543      1223333332222    222222


Q ss_pred             HHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhc--------CChHHHHHHHHhccCC---C-------HhhHHHHHHHHHH
Q 039873          254 LGLQVHSQMLKSDIEPD-VFINSAMISMYGKC--------GKFSNAKKVFEGLETR---N-------VVLWTAMVAACFQ  314 (709)
Q Consensus       254 ~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~--------g~~~~A~~~~~~m~~~---~-------~~~~~~li~~~~~  314 (709)
                      .+...+.....  ..+. ......+...|...        |++++|..+|+++.+.   +       ..+|..+...+..
T Consensus       178 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~  255 (537)
T 3fp2_A          178 LEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL  255 (537)
T ss_dssp             HHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence            22221111100  0111 11233333332222        3566677777666542   1       1235555556666


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHH
Q 039873          315 NEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKV  394 (709)
Q Consensus       315 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~  394 (709)
                      .|++++|+..|++..+.  .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...
T Consensus       256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  332 (537)
T 3fp2_A          256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED  332 (537)
T ss_dssp             TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            77777777777776653  3444555556666666666666666666666554 33455555566666666666666666


Q ss_pred             HhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873          395 FSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMK  466 (709)
Q Consensus       395 f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  466 (709)
                      |+++.   ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++.+.+
T Consensus       333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  406 (537)
T 3fp2_A          333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR  406 (537)
T ss_dssp             HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            65543   1234455555556666666666666666555531 22233555555555555555555555555544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.82  E-value=6.9e-18  Score=185.77  Aligned_cols=352  Identities=7%  Similarity=-0.024  Sum_probs=219.2

Q ss_pred             chHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC---CCcchHHHHHH
Q 039873           31 EDTLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQ---RNVVSYSSLMT  107 (709)
Q Consensus        31 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~  107 (709)
                      ..+..+...+.+.|+++.|...+..+++..+.    ++.++..+...|.+.|++++|.+.|+++.+   .+..+|..+..
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  101 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN----EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            45677777888999999999999999988754    788999999999999999999999998763   35678888999


Q ss_pred             HHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCC
Q 039873          108 WYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGL--VFCKYVRNALVELYTKCLD  185 (709)
Q Consensus       108 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~  185 (709)
                      .+...|++++|+..|+.+.    ..|+...  ..+..+...+....+...+..+++...  .+........+..|....+
T Consensus       102 ~~~~~g~~~~A~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  175 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVLS----LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD  175 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred             HHHHcCCHHHHHHHHHHHh----cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence            9999999999999997553    2232211  112223333344667777777654311  1111222344555667777


Q ss_pred             hHHHHHHHhhCCCCCcc---cHHHHHHHHHhC--------CCccHHHHHHHHHHhCCCCCC--------hhhHHHHHHHH
Q 039873          186 VEMAKRLLDLLPGYDVF---EYNSVLNGLIEN--------ECFRGGVEVLGKMVSGSVRWD--------SVTYVNAFGLS  246 (709)
Q Consensus       186 ~~~A~~~f~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~--------~~t~~~ll~~~  246 (709)
                      .+.+...+......+..   .+..+...+...        |++++|+.+|+++.+.  .|+        ..++..+...+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~  253 (537)
T 3fp2_A          176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFH  253 (537)
T ss_dssp             HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHH
Confidence            78887777776655443   333333333222        4678888888888764  333        12355555566


Q ss_pred             hcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHH
Q 039873          247 ASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALN  323 (709)
Q Consensus       247 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~  323 (709)
                      ...|++++|.+.+..+++..  |+..++..+...|.+.|++++|...|+++.+   .+..+|..+...|...|++++|++
T Consensus       254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  331 (537)
T 3fp2_A          254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE  331 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            67777777777777777653  3466666777777777777777777776543   345667777777777777777777


Q ss_pred             HHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhc
Q 039873          324 LFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDM  398 (709)
Q Consensus       324 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~  398 (709)
                      .|++..+.. +.+...+..+...+...|+++.|..++..+.+.. +.+..++..+...|.+.|++++|...|+++
T Consensus       332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  404 (537)
T 3fp2_A          332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA  404 (537)
T ss_dssp             HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            777766532 1123344445555555555555555555555443 333444455555555555555555555443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.79  E-value=8e-17  Score=166.90  Aligned_cols=324  Identities=13%  Similarity=0.008  Sum_probs=190.7

Q ss_pred             cccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 039873          201 VFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISM  280 (709)
Q Consensus       201 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  280 (709)
                      +..|..+...+.+.|++++|+..|+++.+... .+..++..+...+...|++++|...++.+++.. +.+...+..+..+
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   80 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence            34556666667777777777777777665321 134455555555556666666666666555543 3344455555555


Q ss_pred             HHhcCChHHHHHHHHhccCCC------HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChh
Q 039873          281 YGKCGKFSNAKKVFEGLETRN------VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALR  354 (709)
Q Consensus       281 y~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~  354 (709)
                      |.+.|++++|...|++..+.+      ...|..+...+.       +                ..+......+...|+++
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~----------------~~~~~~a~~~~~~~~~~  137 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------M----------------QRLRSQALDAFDGADYT  137 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHTTCHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHccCHH
Confidence            555555555555555543321      112222210000       0                00111134455556666


Q ss_pred             HHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873          355 HGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLA  431 (709)
Q Consensus       355 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  431 (709)
                      .|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+   .+...|..+...|...|++++|.+.|++..+
T Consensus       138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  216 (359)
T 3ieg_A          138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK  216 (359)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6666666665543 34556666777777777777777777776542   3556777777777778888888888877776


Q ss_pred             CCCCCCHH-HHH------------HHHHHHhccccHHHHHHHHHHHHHhhCCCCCh--HHHHHHHHHHHhcCCHHHHHHH
Q 039873          432 AEERPNHV-TFV------------GVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL--EHYTCIVGLLSKAGLLDEAEKF  496 (709)
Q Consensus       432 ~g~~pd~~-t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~  496 (709)
                      .  .|+.. .+.            .+...+...|++++|...++.+.+...-.+..  ..+..+...|.+.|++++|.+.
T Consensus       217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  294 (359)
T 3ieg_A          217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI  294 (359)
T ss_dssp             H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            3  34322 222            22445667777777777777776542221111  2344566777777777777777


Q ss_pred             HHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873          497 MRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK  552 (709)
Q Consensus       497 ~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  552 (709)
                      +++. ...| +..+|..+...+...|++++|...++++++++|++......+..++..
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL  352 (359)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            6643 2234 467777777777777888888888888888777777666666655443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.79  E-value=1.2e-16  Score=165.52  Aligned_cols=305  Identities=12%  Similarity=0.030  Sum_probs=232.6

Q ss_pred             hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHH
Q 039873          236 SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAAC  312 (709)
Q Consensus       236 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~  312 (709)
                      ...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+   .+...|..+...|
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            3456667777778888888888888887764 45567777788888888888888888877653   3566777778888


Q ss_pred             HHcCCHhHHHHHHHHHHhCCCCC---Ccc-chHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCH
Q 039873          313 FQNEYFEEALNLFCGMEYEAIRP---NEF-TFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNI  388 (709)
Q Consensus       313 ~~~g~~~~A~~~~~~m~~~g~~p---d~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~  388 (709)
                      ...|++++|+..|++..+.  .|   +.. .+..+..       ...                ......+...|...|++
T Consensus        82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~-------~~~----------------~~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVK-------ADE----------------MQRLRSQALDAFDGADY  136 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHH-------HHH----------------HHHHHHHHHHHHHTTCH
T ss_pred             HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHH-------HHH----------------HHHHHHHHHHHHHccCH
Confidence            8888888888888877754  23   111 1111110       000                11223456788999999


Q ss_pred             HHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 039873          389 EAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLM  465 (709)
Q Consensus       389 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~  465 (709)
                      ++|...|+++.   ..+...|..+...|...|++++|++.|+++.... +.+..++..+...+...|++++|...++.+.
T Consensus       137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  215 (359)
T 3ieg_A          137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL  215 (359)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999876   3467889999999999999999999999999852 3456788899999999999999999999987


Q ss_pred             HhhCCCCChHHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCchHHHH
Q 039873          466 KQIGIVPGLEHYT------------CIVGLLSKAGLLDEAEKFMRST-PVKWD-V----VAWHTLLNASRVHQNYGFGRR  527 (709)
Q Consensus       466 ~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~pd-~----~~~~~ll~~~~~~g~~~~a~~  527 (709)
                      +...-  +...+.            .+...+.+.|++++|.+.+++. ...|+ .    ..|..+...+...|++++|..
T Consensus       216 ~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  293 (359)
T 3ieg_A          216 KLDQD--HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR  293 (359)
T ss_dssp             HHCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhCcc--chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            64222  222222            3367799999999999998754 22344 3    234557778999999999999


Q ss_pred             HHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          528 IAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       528 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      .++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999863

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.79  E-value=4.7e-18  Score=174.14  Aligned_cols=343  Identities=11%  Similarity=0.088  Sum_probs=165.1

Q ss_pred             hcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHH
Q 039873          182 KCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQ  261 (709)
Q Consensus       182 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  261 (709)
                      +.|++++|.++++++..++  +|..|+.++.+.|++++|++.|.+.      +|..+|..++.++...|++++|..++..
T Consensus        15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            7788999999999996654  9999999999999999999999763      6788999999999999999999998888


Q ss_pred             HHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchH
Q 039873          262 MLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFA  341 (709)
Q Consensus       262 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~  341 (709)
                      .++.  .+++.+.+.|+.+|.++|+++++.++++.   |+..+|+.+...|...|++++|..+|.++         ..|.
T Consensus        87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~  152 (449)
T 1b89_A           87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG  152 (449)
T ss_dssp             ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred             HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence            8774  55678899999999999999999988864   67789999999999999999999999977         4799


Q ss_pred             HHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHH
Q 039873          342 VMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGRE  421 (709)
Q Consensus       342 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~  421 (709)
                      .+..++.+.|+++.|.+.+..+      .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus       153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE  225 (449)
T 1b89_A          153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE  225 (449)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence            9999999999999999999887      378999999999999999999988887765 444445579999999999999


Q ss_pred             HHHHHHHHHHCCCCCC-H--HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC------ChHHHHHHHHHHHhcCCHHH
Q 039873          422 ALTLFQNMLAAEERPN-H--VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP------GLEHYTCIVGLLSKAGLLDE  492 (709)
Q Consensus       422 A~~~~~~m~~~g~~pd-~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~  492 (709)
                      |+.+++.....  .+- .  .|...++-+--+.+.+.+..+.|..-   ..++|      +..+|.-++..|..-++++.
T Consensus       226 ai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~  300 (449)
T 1b89_A          226 LITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDN  300 (449)
T ss_dssp             HHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence            99999998753  343 3  34445555555666777777766532   34444      45689999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHH
Q 039873          493 AEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIR  563 (709)
Q Consensus       493 A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~  563 (709)
                      |...+-+-+  |+..--..+.....+-.+.+.--++..-.++..|   ...+-|+.++...=+...+.+++
T Consensus       301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~  366 (449)
T 1b89_A          301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYF  366 (449)
T ss_dssp             HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHH
T ss_pred             HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHH
Confidence            998765542  2322223334444555565555555554454444   23444444443333333333333

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=1.8e-17  Score=169.82  Aligned_cols=284  Identities=11%  Similarity=0.066  Sum_probs=114.4

Q ss_pred             HccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHH
Q 039873           79 AKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCH  158 (709)
Q Consensus        79 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  158 (709)
                      -+.|++++|.+.+++++.|+  +|..|..++.+.|++++|++.|.+.       +|..+|..++.++...|++++|..++
T Consensus        14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl   84 (449)
T 1b89_A           14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYL   84 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            37789999999999997765  8999999999999999999999653       47789999999999999999999999


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhh
Q 039873          159 GYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVT  238 (709)
Q Consensus       159 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  238 (709)
                      ...++.  .+++.+.+.|+.+|.++|+++++.++++.   |+..+|+.+...|...|.+++|..+|..+         ..
T Consensus        85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n  150 (449)
T 1b89_A           85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN  150 (449)
T ss_dssp             --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred             HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence            888875  55688899999999999999999988864   67779999999999999999999999987         36


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCH
Q 039873          239 YVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYF  318 (709)
Q Consensus       239 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~  318 (709)
                      |..+..++.+.|++++|.+.+..+      .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++
T Consensus       151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~  223 (449)
T 1b89_A          151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF  223 (449)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence            888888888888888888888876      367888888888888888888877776654 3444444678888888888


Q ss_pred             hHHHHHHHHHHhCCCCCCccchHHHHHHHhc--cCChhHHHHHHHHHHHhCCCC------ChhHHhHHHhHHHhcCCHHH
Q 039873          319 EEALNLFCGMEYEAIRPNEFTFAVMLNSAAG--LSALRHGDLLHAHIEKSGFKE------HLIVGNALINMYAKGGNIEA  390 (709)
Q Consensus       319 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~--~~~~~~a~~i~~~~~~~g~~~------~~~~~~~li~~y~~~g~~~~  390 (709)
                      ++|+.+++...... +-....|+-+--++++  .+.+.+..+.|.  .+.++++      +...|..++-.|.+-++++.
T Consensus       224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~  300 (449)
T 1b89_A          224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN  300 (449)
T ss_dssp             HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence            88888888776432 2222333333333332  223333333222  1122222      34455566666666666666


Q ss_pred             HHHHH
Q 039873          391 ANKVF  395 (709)
Q Consensus       391 A~~~f  395 (709)
                      |....
T Consensus       301 A~~tm  305 (449)
T 1b89_A          301 AIITM  305 (449)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.77  E-value=1.6e-16  Score=162.75  Aligned_cols=286  Identities=9%  Similarity=-0.051  Sum_probs=211.5

Q ss_pred             CCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHH
Q 039873          268 EPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVML  344 (709)
Q Consensus       268 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll  344 (709)
                      +.+..++..+...+...|++++|.++|+++.+   .+...+..++..+...|++++|+.+++++.+.. +.+...+..+.
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            44555666667777777777777777777653   234556666677777777777777777776642 22345566666


Q ss_pred             HHHhccC-ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChH
Q 039873          345 NSAAGLS-ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGR  420 (709)
Q Consensus       345 ~~~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~  420 (709)
                      ..+...| +++.|...+..+.+.. +.+...+..+...|...|++++|...|+++.+   .+...|..+...|...|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence            6677777 7777777777777654 44566777888888888888888888887652   34567777888888899999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCC-------CCChHHHHHHHHHHHhcCCHHHH
Q 039873          421 EALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGI-------VPGLEHYTCIVGLLSKAGLLDEA  493 (709)
Q Consensus       421 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-------~p~~~~~~~li~~~~~~g~~~~A  493 (709)
                      +|++.|++..+.. +.+...+..+...+...|++++|...++.+.+...-       +.....+..+...|.+.|++++|
T Consensus       177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  255 (330)
T 3hym_B          177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA  255 (330)
T ss_dssp             HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            9999999888742 334567888888888899999999998888764311       33356888899999999999999


Q ss_pred             HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh-hhcCCc
Q 039873          494 EKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY-AKEKRW  556 (709)
Q Consensus       494 ~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~  556 (709)
                      .+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..++..| ...|+.
T Consensus       256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence            9887753 2223 4778888888999999999999999999999999988888888888 455553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.76  E-value=5.4e-14  Score=159.96  Aligned_cols=469  Identities=12%  Similarity=0.054  Sum_probs=302.9

Q ss_pred             HHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHH-HHHHHh
Q 039873           33 TLKLLKHSADSKDLKLGKVIHAHLIITTESSRNENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSL-MTWYLH  111 (709)
Q Consensus        33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l-i~~~~~  111 (709)
                      ...|+..+-++.++..-+..++.-+..|..    ++.++|+|...|...++-.+  +.+.+=+    . |.++ +.-||.
T Consensus       842 ~~~lv~~~ekrnrLkll~p~LE~~~~~g~~----~~~~hnalakiyid~n~npe--~fL~~n~----~-yd~~~vgkyce  910 (1630)
T 1xi4_A          842 TDELVAEVEKRNRLKLLLPWLEARIHEGCE----EPATHNALAKIYIDSNNNPE--RFLRENP----Y-YDSRVVGKYCE  910 (1630)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHHhccCCCHH--HHhhccC----c-ccHHHHHHHHH
Confidence            445555555666666666667777777764    89999999999997553222  2221111    1 2221 222333


Q ss_pred             CCChhHHHHHHHHhhh---------CCC----------CCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCC--CCch
Q 039873          112 NGFLLETLKLFKNMVS---------GDN----------LEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGL--VFCK  170 (709)
Q Consensus       112 ~g~~~~A~~~~~~m~~---------~~g----------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~  170 (709)
                      ..++..|.-.|++=.-         +.+          -+-|...|..++.     .+-+.-+++.++.....+  ..|+
T Consensus       911 ~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~-----~~n~~RR~Lidqv~a~aL~e~~~P  985 (1630)
T 1xi4_A          911 KRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLL-----ESNPYRRPLIDQVVQTALSETQDP  985 (1630)
T ss_pred             hcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhc-----CCcHHHHHHHHHHHHhhcccccCH
Confidence            3333333322221000         000          0124444554442     122333455555554443  2334


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHhhCCCC------CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHH
Q 039873          171 YVRNALVELYTKCLDVEMAKRLLDLLPGY------DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFG  244 (709)
Q Consensus       171 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~  244 (709)
                      .--...+..|...|...+|.++++++.-.      +...-|.++...++. +..+..++..+...       .....+..
T Consensus       986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~ 1057 (1630)
T 1xi4_A          986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIAN 1057 (1630)
T ss_pred             HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHH
Confidence            44566678888888888888888877532      224455677666666 45566666555531       11333666


Q ss_pred             HHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHH
Q 039873          245 LSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNL  324 (709)
Q Consensus       245 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~  324 (709)
                      .|...|.+++|.++|+...     ......+.+   +-..|++++|.++.++..  +..+|..+..++.+.|++++|++.
T Consensus      1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A         1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred             HHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHH
Confidence            7778888888888888752     111222223   226778888888888763  466788888888888888888888


Q ss_pred             HHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChh
Q 039873          325 FCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDII  404 (709)
Q Consensus       325 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~  404 (709)
                      |.+.      -|...|..++.+|.+.|+++++.+++....+..  ++..+.+.++..|++.+++++.....   ..++..
T Consensus      1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~a 1196 (1630)
T 1xi4_A         1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNA 1196 (1630)
T ss_pred             HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHH
Confidence            8553      355667778888888888888888888877754  44444556888888888888544332   455667


Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873          405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL  484 (709)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  484 (709)
                      .|..+...|...|++++|..+|...         ..|..+...+.+.|++++|.+.+++.       .+..+|..+..++
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFAC 1260 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHH
Confidence            7777888888888888888888874         37888888888888888888887764       3446788888888


Q ss_pred             HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhc--CCchhHHHH
Q 039873          485 SKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKE--KRWDGVSKI  562 (709)
Q Consensus       485 ~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~  562 (709)
                      ...|++..|.......  .-++..+..++..|...|.+++|+.+++..+.++|.+...|.-|+.+|++.  ++..|+.+.
T Consensus      1261 ve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A         1261 VDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred             hhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            8888888888876543  334555667888888888888888888888888888877887777777653  455555555


Q ss_pred             HH
Q 039873          563 RK  564 (709)
Q Consensus       563 ~~  564 (709)
                      |.
T Consensus      1339 f~ 1340 (1630)
T 1xi4_A         1339 FW 1340 (1630)
T ss_pred             HH
Confidence            54

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.75  E-value=9e-15  Score=158.84  Aligned_cols=365  Identities=10%  Similarity=-0.053  Sum_probs=267.7

Q ss_pred             chhHHHHHHHHHHh----cCChHHHHHHHhhCCC-CCcccHHHHHHHHHh----CCCccHHHHHHHHHHhCCCCCChhhH
Q 039873          169 CKYVRNALVELYTK----CLDVEMAKRLLDLLPG-YDVFEYNSVLNGLIE----NECFRGGVEVLGKMVSGSVRWDSVTY  239 (709)
Q Consensus       169 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~  239 (709)
                      +......|-..|..    .+++++|...|++..+ .+...+..|...|..    .+++++|++.|++..+.|   +...+
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  114 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ  114 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            44455555555555    6667777776665433 355566666666766    677777777777776654   44555


Q ss_pred             HHHHHHHhc----CCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHhccC-CCHhhHHHHHH
Q 039873          240 VNAFGLSAS----LKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGK----CGKFSNAKKVFEGLET-RNVVLWTAMVA  310 (709)
Q Consensus       240 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~  310 (709)
                      ..+...+..    .++.++|.+.++...+.|   +...+..|..+|..    .++.++|.+.|++..+ .+..++..+..
T Consensus       115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~  191 (490)
T 2xm6_A          115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY  191 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            555556655    677788888888777765   45666777777776    6778888888877654 46677777777


Q ss_pred             HHHH----cCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCChhHHhHHHhHH
Q 039873          311 ACFQ----NEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAG----LSALRHGDLLHAHIEKSGFKEHLIVGNALINMY  382 (709)
Q Consensus       311 ~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y  382 (709)
                      .|..    .++.++|++.|++..+.|   +...+..+...+..    .++.++|...+....+.|   +...+..|..+|
T Consensus       192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y  265 (490)
T 2xm6_A          192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL  265 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred             HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence            7777    788888888888877654   34455555555554    678888888888887764   455666777778


Q ss_pred             Hh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 039873          383 AK----GGNIEAANKVFSDMRY-RDIITWNAMICGYSHH-----GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLG  452 (709)
Q Consensus       383 ~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g  452 (709)
                      ..    .++.++|...|++..+ .+...+..+...|...     +++++|+..|++..+.|   +...+..+...+...|
T Consensus       266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g  342 (490)
T 2xm6_A          266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG  342 (490)
T ss_dssp             HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence            77    8999999999998764 4667888888888887     89999999999998865   3455666666666545


Q ss_pred             ---cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 039873          453 ---LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK----AGLLDEAEKFMRSTPVKWDVVAWHTLLNASRV----HQN  521 (709)
Q Consensus       453 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~----~g~  521 (709)
                         +.++|.++|+...+.    .+...+..|..+|..    .+++++|.+.|++.--..+...+..|...+..    .++
T Consensus       343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d  418 (490)
T 2xm6_A          343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD  418 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred             CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence               889999999998763    357788889999988    89999999999865323467888888888887    899


Q ss_pred             chHHHHHHHHHHhcCCC---CchhHHHHHHHhhh
Q 039873          522 YGFGRRIAEYILHMDPN---DVGTYILLSNMYAK  552 (709)
Q Consensus       522 ~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~  552 (709)
                      .++|...++++.+.+|+   ++.....|..++..
T Consensus       419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~  452 (490)
T 2xm6_A          419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK  452 (490)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence            99999999999999854   66666777666654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.74  E-value=6.9e-15  Score=161.46  Aligned_cols=209  Identities=7%  Similarity=-0.033  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHHhCCCCChhHHhHHHhHHHh-------cCCHH-------HHHHHHhhcCC---C-ChhhHHHHHHHHHHc
Q 039873          355 HGDLLHAHIEKSGFKEHLIVGNALINMYAK-------GGNIE-------AANKVFSDMRY---R-DIITWNAMICGYSHH  416 (709)
Q Consensus       355 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~f~~~~~---~-~~~~~~~li~~~~~~  416 (709)
                      .+..+++.+++.. +.+..+|..++..+.+       .|+++       +|..+|++...   | +...|..++..+.+.
T Consensus       256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            6667888888763 5677888888888876       79987       89999998763   3 577999999999999


Q ss_pred             CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHH-HHhcCCHHH
Q 039873          417 GLGREALTLFQNMLAAEERPNH--VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGL-LSKAGLLDE  492 (709)
Q Consensus       417 g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~~~  492 (709)
                      |++++|.++|+++.+  +.|+.  ..|...+..+.+.|++++|..+|+...+.   .|. ...|...+.+ +...|+.++
T Consensus       335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~  409 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV  409 (530)
T ss_dssp             TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred             CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence            999999999999998  56753  47888888888899999999999998653   333 3333332222 346899999


Q ss_pred             HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch----hHHHHHHHhhhcCCchhHHHHHHHH
Q 039873          493 AEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG----TYILLSNMYAKEKRWDGVSKIRKLM  566 (709)
Q Consensus       493 A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m  566 (709)
                      |.++|+.. ...| +...|..++......|+.+.|..+++++++..|.++.    .+...+......|+.+.+.++.+++
T Consensus       410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99998843 2235 4889999999999999999999999999998766554    6777788888899999999999988


Q ss_pred             HhC
Q 039873          567 KVR  569 (709)
Q Consensus       567 ~~~  569 (709)
                      .+.
T Consensus       490 ~~~  492 (530)
T 2ooe_A          490 FTA  492 (530)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            763

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.73  E-value=1.1e-15  Score=156.41  Aligned_cols=264  Identities=11%  Similarity=0.030  Sum_probs=226.4

Q ss_pred             CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHH
Q 039873          300 RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALI  379 (709)
Q Consensus       300 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li  379 (709)
                      .+...+..+...+...|++++|+++|+++.+.. +.+...+..+...+...|+.++|..++..+.+.. +.+..++..+.
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            456677788889999999999999999998753 2344566677888899999999999999999875 55778899999


Q ss_pred             hHHHhcC-CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 039873          380 NMYAKGG-NIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQ  455 (709)
Q Consensus       380 ~~y~~~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~  455 (709)
                      ..|...| ++++|...|++...   .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence            9999999 99999999998763   456789999999999999999999999999853 334567777888999999999


Q ss_pred             HHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCchH
Q 039873          456 EGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP-----------VKWDVVAWHTLLNASRVHQNYGF  524 (709)
Q Consensus       456 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~pd~~~~~~ll~~~~~~g~~~~  524 (709)
                      +|...++.+.+.  .+.+...+..+...|.+.|++++|.+.+++.-           ...+..+|..+...+...|++++
T Consensus       177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            999999998652  23456789999999999999999999976431           02336789999999999999999


Q ss_pred             HHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          525 GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       525 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      |...++++++..|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus       255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999987764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.72  E-value=4.2e-16  Score=162.44  Aligned_cols=277  Identities=9%  Similarity=-0.061  Sum_probs=194.5

Q ss_pred             cCChHHHHH-HHHhccC---C----CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhH
Q 039873          284 CGKFSNAKK-VFEGLET---R----NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRH  355 (709)
Q Consensus       284 ~g~~~~A~~-~~~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~  355 (709)
                      .|++++|.. .|++...   .    +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence            355555655 5554322   1    23445566666666666666666666666542 2233455555566666666666


Q ss_pred             HHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-ChhhHHH---------------HHHHHHHcC
Q 039873          356 GDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-DIITWNA---------------MICGYSHHG  417 (709)
Q Consensus       356 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~---------------li~~~~~~g  417 (709)
                      |...+..+++.. +.+..++..+...|.+.|++++|...|+++..  | +...+..               .+..+...|
T Consensus       117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (368)
T 1fch_A          117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS  195 (368)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence            666666666654 34556666677777777777777777766542  1 1112211               133334889


Q ss_pred             ChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039873          418 LGREALTLFQNMLAAEERPN---HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE  494 (709)
Q Consensus       418 ~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  494 (709)
                      ++++|++.|+++...  .|+   ..++..+...+...|++++|...++.+.+.  .+.+...+..+...|.+.|++++|.
T Consensus       196 ~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          196 LFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999884  444   678888999999999999999999998764  2334678999999999999999999


Q ss_pred             HHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-----------chhHHHHHHHhhhcCCchhHHH
Q 039873          495 KFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND-----------VGTYILLSNMYAKEKRWDGVSK  561 (709)
Q Consensus       495 ~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~  561 (709)
                      +.+++. ...| +..+|..+...+...|++++|...+++++++.|++           ..+|..++.+|...|++++|..
T Consensus       272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  351 (368)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence            998754 2334 48889999999999999999999999999988877           7899999999999999999999


Q ss_pred             HHHHH
Q 039873          562 IRKLM  566 (709)
Q Consensus       562 ~~~~m  566 (709)
                      ++++.
T Consensus       352 ~~~~~  356 (368)
T 1fch_A          352 ADARD  356 (368)
T ss_dssp             HHTTC
T ss_pred             hHHHH
Confidence            88643

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.72  E-value=1.3e-15  Score=158.79  Aligned_cols=295  Identities=9%  Similarity=-0.076  Sum_probs=149.3

Q ss_pred             hCCCccHHHH-HHHHHHhCCC---CCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChH
Q 039873          213 ENECFRGGVE-VLGKMVSGSV---RWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFS  288 (709)
Q Consensus       213 ~~g~~~~A~~-l~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~  288 (709)
                      ..|++++|++ .|.+......   ..+...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|+++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  115 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL  115 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence            3456666666 5554433211   1123445566666666677777777777666654 445667777777888888888


Q ss_pred             HHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHH
Q 039873          289 NAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEK  365 (709)
Q Consensus       289 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~  365 (709)
                      +|...|+++.+   .+..+|..+...|...|++++|++.|+++....  |+.......+...      .           
T Consensus       116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~------~-----------  176 (368)
T 1fch_A          116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG------A-----------  176 (368)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH------h-----------
Confidence            88888876643   466778888888888888888888888887653  3322111100000      0           


Q ss_pred             hCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC--CC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 039873          366 SGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR--YR---DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVT  440 (709)
Q Consensus       366 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t  440 (709)
                       +.......+..+...+ +.|++++|...|+++.  .|   +..+|..+...|...|++++|++.|+++.... +.+..+
T Consensus       177 -~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~  253 (368)
T 1fch_A          177 -GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL  253 (368)
T ss_dssp             ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             -hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence             0000000011111122 4445555555554443  11   23445555555555555555555555554421 122344


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC------------CHH
Q 039873          441 FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW------------DVV  507 (709)
Q Consensus       441 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p------------d~~  507 (709)
                      +..+...+...|++++|...++.+.+.  .+.+...+..+..+|.+.|++++|.+.+++. ...|            ...
T Consensus       254 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  331 (368)
T 1fch_A          254 WNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN  331 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence            555555555555555555555555432  1122344555555555555555555554422 0001            145


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHH
Q 039873          508 AWHTLLNASRVHQNYGFGRRIAEYI  532 (709)
Q Consensus       508 ~~~~ll~~~~~~g~~~~a~~~~~~~  532 (709)
                      +|..+..++...|+.++|..++++.
T Consensus       332 ~~~~l~~~~~~~g~~~~A~~~~~~~  356 (368)
T 1fch_A          332 IWSTLRLALSMLGQSDAYGAADARD  356 (368)
T ss_dssp             HHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred             HHHHHHHHHHHhCChHhHHHhHHHH
Confidence            6666666666666666666655543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.71  E-value=7.7e-13  Score=150.67  Aligned_cols=379  Identities=10%  Similarity=0.066  Sum_probs=245.9

Q ss_pred             chhHHHHHHHHHHccCChHHHHHHHhcCCC-C-----CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHH
Q 039873           67 NVVLTNSLVNLYAKCNQISIARQLFDNMRQ-R-----NVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSI  140 (709)
Q Consensus        67 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~  140 (709)
                      ++.--...+..|+..|.+.+|.++++++.- +     +...-|.|+.+..+. +..+..+..+...        .+...-
T Consensus       984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--------~~d~~e 1054 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--------NYDAPD 1054 (1630)
T ss_pred             CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh--------hccHHH
Confidence            333345566667777777777777776652 1     223455555555555 3344444444331        111333


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHH
Q 039873          141 VLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGG  220 (709)
Q Consensus       141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A  220 (709)
                      +...|...|.+++|.++++...     ......+.+   +...|++++|.++.++..  +..+|..+..++.+.|++++|
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHH
Confidence            5556667777777777777641     111112222   226677777777777663  456777888888888888888


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 039873          221 VEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETR  300 (709)
Q Consensus       221 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~  300 (709)
                      ++.|.+.      -|...|..+..+|.+.|+++++.+.+....+..  ++..+.+.++.+|++.+++++.....   ..+
T Consensus      1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~ 1193 (1630)
T 1xi4_A         1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGP 1193 (1630)
T ss_pred             HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCC
Confidence            8888653      356677778888888888888888888777654  34344445888888888877544432   344


Q ss_pred             CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHh
Q 039873          301 NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALIN  380 (709)
Q Consensus       301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~  380 (709)
                      +...|..+...|...|++++|..+|...         ..|..+...+.+.|+++.|.+.++.+      .+..+|..+..
T Consensus      1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A         1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence            5666777777888888888888888774         26777888888888888888777765      34567777777


Q ss_pred             HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HH--HHHHHHHhccccHHHH
Q 039873          381 MYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TF--VGVLSACGHLGLVQEG  457 (709)
Q Consensus       381 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~--~~ll~a~~~~g~~~~a  457 (709)
                      ++...|++..|...... ...+...+..++..|...|.+++|+.+++....  +.|... .|  ..++.+-.+.+++.++
T Consensus      1259 acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A         1259 ACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred             HHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence            77778888888877665 233445566778888888888888888877664  334322 33  4445555556666666


Q ss_pred             HHHHHHHHHhhCCCC------ChHHHHHHHHHHHhcCCHHHHHHH
Q 039873          458 FYYLNHLMKQIGIVP------GLEHYTCIVGLLSKAGLLDEAEKF  496 (709)
Q Consensus       458 ~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~  496 (709)
                      .++|..-   ..++|      +..+|.-++-.|.+.|+++.|...
T Consensus      1336 lk~f~~r---ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A         1336 LELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred             HHHHHHh---cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            6666542   23333      356688888888888888888754

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.70  E-value=3.9e-14  Score=155.45  Aligned_cols=405  Identities=9%  Similarity=0.032  Sum_probs=276.1

Q ss_pred             CcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 039873           98 NVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALV  177 (709)
Q Consensus        98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  177 (709)
                      |..+|..++. +.+.|++++|..+|+++. .. .+-+...|...+..+.+.|+++.|+.+++.+++..  |+...|..++
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al-~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~   86 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLV-AQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL   86 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHH-TT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHH-HH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence            6678888888 478899999999999987 22 33356678888888888899999999999888764  5666777666


Q ss_pred             H-HHHhcCChHHHHH----HHhhCC------CCCcccHHHHHHHHHh---------CCCccHHHHHHHHHHhCCCCCCh-
Q 039873          178 E-LYTKCLDVEMAKR----LLDLLP------GYDVFEYNSVLNGLIE---------NECFRGGVEVLGKMVSGSVRWDS-  236 (709)
Q Consensus       178 ~-~y~~~g~~~~A~~----~f~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~-  236 (709)
                      . .+...|+.+.|.+    +|+...      ..+...|...+....+         .|++++|..+|++.++.   |+. 
T Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~  163 (530)
T 2ooe_A           87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN  163 (530)
T ss_dssp             HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence            4 3345577666654    555431      1345567777765554         57777888888887762   332 


Q ss_pred             --hhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-------cc------CCC
Q 039873          237 --VTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEG-------LE------TRN  301 (709)
Q Consensus       237 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-------m~------~~~  301 (709)
                        ..|..........+.                    .+...++.  .+.++++.|..++..       +.      .++
T Consensus       164 ~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~  221 (530)
T 2ooe_A          164 IEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ  221 (530)
T ss_dssp             HHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred             HHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence              122211111000000                    01111110  123345555555443       11      111


Q ss_pred             --------HhhHHHHHHHHHHc----CCH----hHHHHHHHHHHhCCCCC-CccchHHHHHHHhc-------cCChh---
Q 039873          302 --------VVLWTAMVAACFQN----EYF----EEALNLFCGMEYEAIRP-NEFTFAVMLNSAAG-------LSALR---  354 (709)
Q Consensus       302 --------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~-------~~~~~---  354 (709)
                              ...|...+.-...+    ++.    ++++.+|++....  .| +...|......+..       .|+++   
T Consensus       222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~  299 (530)
T 2ooe_A          222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK  299 (530)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence                    34666665433332    222    3777888888764  34 44555555555553       68877   


Q ss_pred             ----HHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-Ch-hhHHHHHHHHHHcCChHHHHHHH
Q 039873          355 ----HGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-DI-ITWNAMICGYSHHGLGREALTLF  426 (709)
Q Consensus       355 ----~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~  426 (709)
                          .|..+++.+++.-.+.+..++..++..+.+.|++++|..+|+++..  | +. ..|..++..+.+.|+.++|.++|
T Consensus       300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~  379 (530)
T 2ooe_A          300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  379 (530)
T ss_dssp             HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence                8899999988733456788999999999999999999999998763  3 33 48999999999999999999999


Q ss_pred             HHHHHCCCCCC-HHHHHHHHHH-HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 039873          427 QNMLAAEERPN-HVTFVGVLSA-CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST----  500 (709)
Q Consensus       427 ~~m~~~g~~pd-~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----  500 (709)
                      ++..+.  .|+ ...+...... +...|++++|..+|+..++..+  .+...|..+++.+.+.|+.++|+.+|++.    
T Consensus       380 ~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~  455 (530)
T 2ooe_A          380 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  455 (530)
T ss_dssp             HHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence            999884  343 3333332222 3358999999999999887542  34678999999999999999999998854    


Q ss_pred             CCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 039873          501 PVKWD--VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN  538 (709)
Q Consensus       501 ~~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  538 (709)
                      +..|+  ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus       456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            33333  568999999999999999999999999998874

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.70  E-value=1.2e-13  Score=149.88  Aligned_cols=352  Identities=10%  Similarity=-0.030  Sum_probs=293.5

Q ss_pred             CCcccHHHHHHHHHh----CCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCCcHHHHHHHHHHHHcCCCCc
Q 039873          199 YDVFEYNSVLNGLIE----NECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSAS----LKDLKLGLQVHSQMLKSDIEPD  270 (709)
Q Consensus       199 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~  270 (709)
                      .++.++..+...|..    .+++++|+..|++..+.|   +...+..+...+..    .++.++|.+.+....+.|   +
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~  110 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L  110 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence            466677777788887    899999999999998864   56677777777777    899999999999999876   6


Q ss_pred             hHHHHHHHHHHHh----cCChHHHHHHHHhccCC-CHhhHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCccchH
Q 039873          271 VFINSAMISMYGK----CGKFSNAKKVFEGLETR-NVVLWTAMVAACFQ----NEYFEEALNLFCGMEYEAIRPNEFTFA  341 (709)
Q Consensus       271 ~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~  341 (709)
                      ...+..|..+|..    .++.++|...|++..+. +...+..+...|..    .++.++|++.|++..+.|   +...+.
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~  187 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN  187 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            6777888899988    78999999999987654 67788888888887    889999999999998865   556666


Q ss_pred             HHHHHHhc----cCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHHH
Q 039873          342 VMLNSAAG----LSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK----GGNIEAANKVFSDMRY-RDIITWNAMICG  412 (709)
Q Consensus       342 ~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~  412 (709)
                      .+...+..    .++.++|...+....+.|   +......|..+|..    .++.++|...|++..+ .+..++..+...
T Consensus       188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~  264 (490)
T 2xm6_A          188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI  264 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            67777766    789999999999999875   56778888888987    8999999999998764 567788888888


Q ss_pred             HHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 039873          413 YSH----HGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHL-----GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGL  483 (709)
Q Consensus       413 ~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~  483 (709)
                      |..    .++.++|++.|++..+.|   +...+..+...+...     +++++|..+++...+. +   +...+..|..+
T Consensus       265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~  337 (490)
T 2xm6_A          265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI  337 (490)
T ss_dssp             HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence            888    899999999999998765   445666666667666     8999999999998763 3   45678888888


Q ss_pred             HHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh----
Q 039873          484 LSKAG---LLDEAEKFMRSTPVKWDVVAWHTLLNASRV----HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK----  552 (709)
Q Consensus       484 ~~~~g---~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----  552 (709)
                      |.+.|   ++++|.+.|++.--..++..+..|...+..    .+++++|...++++.+.+  ++..+..|+.+|..    
T Consensus       338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~  415 (490)
T 2xm6_A          338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV  415 (490)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred             HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence            88877   789999998865323578889999999988    899999999999999875  56789999999998    


Q ss_pred             cCCchhHHHHHHHHHhCCC
Q 039873          553 EKRWDGVSKIRKLMKVRKV  571 (709)
Q Consensus       553 ~g~~~~a~~~~~~m~~~~~  571 (709)
                      .+++++|.+.+++..+.+.
T Consensus       416 ~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          416 ERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             CCCHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHCCC
Confidence            8999999999999988653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.69  E-value=7.5e-16  Score=160.46  Aligned_cols=261  Identities=7%  Similarity=-0.101  Sum_probs=196.6

Q ss_pred             CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHh
Q 039873          301 NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALIN  380 (709)
Q Consensus       301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~  380 (709)
                      +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+++.. +.+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            34557777777777777777777777777642 2245566777777777777777777777777764 445677788888


Q ss_pred             HHHhcCCHHHHHHHHhhcCC--C-C----------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 039873          381 MYAKGGNIEAANKVFSDMRY--R-D----------IITWNAMICGYSHHGLGREALTLFQNMLAAEER-PNHVTFVGVLS  446 (709)
Q Consensus       381 ~y~~~g~~~~A~~~f~~~~~--~-~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~  446 (709)
                      .|.+.|++++|...|+++.+  | +          ...+..+...|...|++++|+++|+++.+.... ++..++..+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            88888888888888887753  2 1          123344578888999999999999999885311 15778888999


Q ss_pred             HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchH
Q 039873          447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGF  524 (709)
Q Consensus       447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~  524 (709)
                      .+...|++++|...|+.+.+.  .+.+...|..+..+|.+.|++++|.+.+++. ...|+ ..+|..+...+...|++++
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            999999999999999998764  2345778999999999999999999998754 23454 8889999999999999999


Q ss_pred             HHHHHHHHHhcCCC------------CchhHHHHHHHhhhcCCchhHHHHHHH
Q 039873          525 GRRIAEYILHMDPN------------DVGTYILLSNMYAKEKRWDGVSKIRKL  565 (709)
Q Consensus       525 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~  565 (709)
                      |...+++++++.|+            +...+..|..+|...|+.+.+.++.++
T Consensus       300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            99999999998765            357789999999999999988887764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.68  E-value=2.2e-14  Score=143.71  Aligned_cols=268  Identities=10%  Similarity=-0.020  Sum_probs=200.6

Q ss_pred             HHhcCChHHHHHHHHhccCCCH----hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHH
Q 039873          281 YGKCGKFSNAKKVFEGLETRNV----VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHG  356 (709)
Q Consensus       281 y~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a  356 (709)
                      ....|++..|+..++.....+.    ...-.+..+|...|++++|+..++.    .-.|+..++..+...+...++.+.|
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A   84 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI   84 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence            3456777777777776554332    2334456777777777777765543    1234555666666777777777777


Q ss_pred             HHHHHHHHHhCC-CCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 039873          357 DLLHAHIEKSGF-KEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEER  435 (709)
Q Consensus       357 ~~i~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  435 (709)
                      .+.++.++..+. +.+..++..+...|.+.|++++|.+.|++  ..+...+..++..|.+.|++++|.+.|+++.+.  .
T Consensus        85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~  160 (291)
T 3mkr_A           85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D  160 (291)
T ss_dssp             HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence            777777776654 34556667778899999999999999998  567889999999999999999999999999985  5


Q ss_pred             CCHHHH---HHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 039873          436 PNHVTF---VGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWH  510 (709)
Q Consensus       436 pd~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~  510 (709)
                      |+....   ...+..+...|++++|..+|+.+.+.  .+.+...++.+..+|.+.|++++|.+.+++. ...| +..+|.
T Consensus       161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~  238 (291)
T 3mkr_A          161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI  238 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            765321   12233344568999999999999875  4457789999999999999999999998863 3445 488899


Q ss_pred             HHHHHHHhcCCchH-HHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHH
Q 039873          511 TLLNASRVHQNYGF-GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKI  562 (709)
Q Consensus       511 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  562 (709)
                      .++..+...|+.++ +.++++++++++|+++.+    .+...+.+.++++..-
T Consensus       239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~  287 (291)
T 3mkr_A          239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ  287 (291)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence            99999999999876 678999999999998653    3456666666665543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.67  E-value=3.5e-14  Score=153.42  Aligned_cols=328  Identities=12%  Similarity=0.008  Sum_probs=182.5

Q ss_pred             hhHHHHHHHHhcCCCcHHHHHHHHHHHHcC------CC-CchHHHHHHHHHHHhc--CChHHHHHHHHhccC---CCHhh
Q 039873          237 VTYVNAFGLSASLKDLKLGLQVHSQMLKSD------IE-PDVFINSAMISMYGKC--GKFSNAKKVFEGLET---RNVVL  304 (709)
Q Consensus       237 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~-~~~~~~~~li~~y~~~--g~~~~A~~~~~~m~~---~~~~~  304 (709)
                      .+|..+..++...|++++|...++.+.+..      .. ....+++.+..++.+.  +++++|...|++..+   .+...
T Consensus        95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~  174 (472)
T 4g1t_A           95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF  174 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH
Confidence            345555555555555555555555544320      01 1233444444444443  346677777766543   23444


Q ss_pred             HHHHHHH---HHHcCCHhHHHHHHHHHHhCCCCCC-ccchHHHHHHHh----ccCChhHHHHHHHHHHHhCCCCChhHHh
Q 039873          305 WTAMVAA---CFQNEYFEEALNLFCGMEYEAIRPN-EFTFAVMLNSAA----GLSALRHGDLLHAHIEKSGFKEHLIVGN  376 (709)
Q Consensus       305 ~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~----~~~~~~~a~~i~~~~~~~g~~~~~~~~~  376 (709)
                      +..+...   +...++.++|++.|++..+.  .|+ ..++..+...+.    ..++.+.|.+.+..+.+.. +.+..++.
T Consensus       175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~  251 (472)
T 4g1t_A          175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLR  251 (472)
T ss_dssp             HHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHH
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHH
Confidence            4444333   33446666777777766653  233 233333333332    2355667777777776654 45566677


Q ss_pred             HHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCC
Q 039873          377 ALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSH-------------------HGLGREALTLFQNMLAAEE  434 (709)
Q Consensus       377 ~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~  434 (709)
                      .+...|.+.|++++|...|++..+   .+..+|..+...|..                   .+..++|+..|++..+.. 
T Consensus       252 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-  330 (472)
T 4g1t_A          252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-  330 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-
Confidence            777777777777777777776652   234455555554432                   233567888888877742 


Q ss_pred             CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChH----HHHHHHH-HHHhcCCHHHHHHHHHh-CCCCCCHHH
Q 039873          435 RPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLE----HYTCIVG-LLSKAGLLDEAEKFMRS-TPVKWDVVA  508 (709)
Q Consensus       435 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~-~~~~pd~~~  508 (709)
                      +.+..++..+...+...|++++|...|++..+.   .|+..    .+..+.. .+...|+.++|++.+++ +.+.|+...
T Consensus       331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~  407 (472)
T 4g1t_A          331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE  407 (472)
T ss_dssp             TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred             CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence            223446777888889999999999999988653   33322    2233333 23467899999998764 345666544


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCccCCceeEE
Q 039873          509 WHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWT  580 (709)
Q Consensus       509 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~  580 (709)
                      +...         ...+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-......+|+
T Consensus       408 ~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          408 KEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             HHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred             HHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence            3332         24456778888899999999999999999999999999999999988664433345554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.66  E-value=9.7e-15  Score=151.99  Aligned_cols=231  Identities=11%  Similarity=-0.053  Sum_probs=196.1

Q ss_pred             CccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHH
Q 039873          336 NEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICG  412 (709)
Q Consensus       336 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~  412 (709)
                      +...+......+...|+++.|..++..+++.. +.+..++..+...|.+.|++++|...|+++.   ..+..+|..+...
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            44568888889999999999999999999876 5678899999999999999999999999876   3467899999999


Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHH
Q 039873          413 YSHHGLGREALTLFQNMLAAEERPNHV-----------TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIV  481 (709)
Q Consensus       413 ~~~~g~~~~A~~~~~~m~~~g~~pd~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li  481 (709)
                      |...|++++|++.|+++.+.  .|+..           .+..+...+...|++++|..+++.+.+..+..++...+..+.
T Consensus       143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            99999999999999999883  45432           223456788999999999999999987644434688999999


Q ss_pred             HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhH
Q 039873          482 GLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGV  559 (709)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  559 (709)
                      ..|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..+++++++.|+++.++..++.+|...|++++|
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999998754 2234 5889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 039873          560 SKIRKLMKVR  569 (709)
Q Consensus       560 ~~~~~~m~~~  569 (709)
                      .+.++++.+.
T Consensus       301 ~~~~~~al~~  310 (365)
T 4eqf_A          301 VSNFLTALSL  310 (365)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999863

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.66  E-value=8.5e-17  Score=177.34  Aligned_cols=163  Identities=12%  Similarity=0.122  Sum_probs=132.6

Q ss_pred             CCCchHHHHHHHHHHHhcCChHHHHHHHHhcc-------CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccc
Q 039873          267 IEPDVFINSAMISMYGKCGKFSNAKKVFEGLE-------TRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFT  339 (709)
Q Consensus       267 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t  339 (709)
                      ...-..+||+||++|+++|++++|.++|++|.       .||+++||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT  202 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS  202 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence            34456789999999999999999999997764       47999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhccCCh-hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CChhhHHHHHHHH
Q 039873          340 FAVMLNSAAGLSAL-RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-----RDIITWNAMICGY  413 (709)
Q Consensus       340 ~~~ll~~~~~~~~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~  413 (709)
                      |+++|.++++.|.. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++...+++..+.-     +.+.+.+.|...|
T Consensus       203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~  282 (1134)
T 3spa_A          203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY  282 (1134)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence            99999999999985 78899999999999999999999999988887666666666554442     1233444556666


Q ss_pred             HHcCC---------hHHHHHHHHHH
Q 039873          414 SHHGL---------GREALTLFQNM  429 (709)
Q Consensus       414 ~~~g~---------~~~A~~~~~~m  429 (709)
                      .+.+.         .++-.++|++=
T Consensus       283 s~d~~~s~pk~~~~~~~L~~~~~~Q  307 (1134)
T 3spa_A          283 AKDGRVSYPKLHLPLKTLQCLFEKQ  307 (1134)
T ss_dssp             CCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred             ccCCCCcCccccCCHHHHHHHHHHH
Confidence            65552         34555566553

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.66  E-value=1e-16  Score=176.70  Aligned_cols=130  Identities=12%  Similarity=0.131  Sum_probs=112.6

Q ss_pred             CCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 039873          368 FKEHLIVGNALINMYAKGGNIEAANKVFSDMR-------YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVT  440 (709)
Q Consensus       368 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t  440 (709)
                      ...-..+||+||++|+++|++++|.++|++|.       .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT  202 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS  202 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence            34456789999999999999999999997754       58999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccc-HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 039873          441 FVGVLSACGHLGL-VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMR  498 (709)
Q Consensus       441 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  498 (709)
                      |+++|.++++.|. .++|.++|++|.+ .|+.||..+|++++....+.+-++...++..
T Consensus       203 YntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P  260 (1134)
T 3spa_A          203 YAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKP  260 (1134)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCc
Confidence            9999999999987 5788899999977 5999999999999988888777666666633

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.64  E-value=6.9e-15  Score=150.18  Aligned_cols=256  Identities=11%  Similarity=-0.031  Sum_probs=176.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhc
Q 039873          273 INSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAG  349 (709)
Q Consensus       273 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~  349 (709)
                      .+..+...+.+.|++++|..+|+++.+   .+...|..+...+...|++++|.+.|+++.+.                  
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------   84 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML------------------   84 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------
Confidence            344555556666666666666665532   24455555666666666666666666665543                  


Q ss_pred             cCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHH--------------HH-
Q 039873          350 LSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAM--------------IC-  411 (709)
Q Consensus       350 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~l--------------i~-  411 (709)
                                       . +.+..++..+...|.+.|++++|...|+++..   .+...+..+              .. 
T Consensus        85 -----------------~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (327)
T 3cv0_A           85 -----------------D-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF  146 (327)
T ss_dssp             -----------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred             -----------------C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence                             2 22333444444445555555555555544331   111122222              22 


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHH
Q 039873          412 GYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLD  491 (709)
Q Consensus       412 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  491 (709)
                      .+...|++++|++.++++.+.. +.+..++..+...+...|++++|...++.+.+.  .+.+...+..+...|.+.|+++
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~  223 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQ  223 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHH
Confidence            3667788899999999988753 335678888888889999999999999988764  2334678889999999999999


Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC------------CchhHHHHHHHhhhcCCch
Q 039873          492 EAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN------------DVGTYILLSNMYAKEKRWD  557 (709)
Q Consensus       492 ~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~  557 (709)
                      +|.+.+++. ...| +..+|..+...+...|++++|.+.++++++..|+            +...+..++.+|...|+++
T Consensus       224 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  303 (327)
T 3cv0_A          224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD  303 (327)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence            999988753 2234 4888999999999999999999999999999998            7889999999999999999


Q ss_pred             hHHHHHHHHH
Q 039873          558 GVSKIRKLMK  567 (709)
Q Consensus       558 ~a~~~~~~m~  567 (709)
                      +|..++++..
T Consensus       304 ~A~~~~~~~l  313 (327)
T 3cv0_A          304 LVELTYAQNV  313 (327)
T ss_dssp             HHHHHTTCCS
T ss_pred             HHHHHHHHHH
Confidence            9999887543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.62  E-value=1.4e-13  Score=140.35  Aligned_cols=225  Identities=11%  Similarity=0.008  Sum_probs=129.2

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHH--
Q 039873          270 DVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVML--  344 (709)
Q Consensus       270 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll--  344 (709)
                      +..++..+...|.+.|++++|...|+++.+   .+...|..+...|...|++++|++.|+++.+..  |+.......+  
T Consensus        54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~  131 (327)
T 3cv0_A           54 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQ  131 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhH
Confidence            444455555556666666666666655432   345566666777777777777777777776542  3222221111  


Q ss_pred             ------------HH--HhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHH
Q 039873          345 ------------NS--AAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWN  407 (709)
Q Consensus       345 ------------~~--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~  407 (709)
                                  ..  +...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.   ..+..+|.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  210 (327)
T 3cv0_A          132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWN  210 (327)
T ss_dssp             --------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence                        22  555666677777776666654 3355666666666777777777776666554   23455666


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC----------ChHHH
Q 039873          408 AMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP----------GLEHY  477 (709)
Q Consensus       408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----------~~~~~  477 (709)
                      .+...|...|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.++.+.+...-..          +...+
T Consensus       211 ~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  289 (327)
T 3cv0_A          211 KLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW  289 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHH
Confidence            66666666677777777766666532 22345566666666666666666666666654321100          23455


Q ss_pred             HHHHHHHHhcCCHHHHHHHHH
Q 039873          478 TCIVGLLSKAGLLDEAEKFMR  498 (709)
Q Consensus       478 ~~li~~~~~~g~~~~A~~~~~  498 (709)
                      ..+..+|.+.|++++|.++++
T Consensus       290 ~~l~~~~~~~g~~~~A~~~~~  310 (327)
T 3cv0_A          290 DFFRMLLNVMNRPDLVELTYA  310 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHhcCCHHHHHHHHH
Confidence            555566666666666655544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.61  E-value=3.9e-13  Score=134.64  Aligned_cols=248  Identities=10%  Similarity=-0.013  Sum_probs=183.6

Q ss_pred             HHhcCChHHHHHHHhhCCCCCc----ccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHH
Q 039873          180 YTKCLDVEMAKRLLDLLPGYDV----FEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLG  255 (709)
Q Consensus       180 y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  255 (709)
                      ....|.+..|...++.....+.    ...-.+..+|...|++++|+..++..    -.|+..++..+...+...++.+.|
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A   84 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI   84 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence            3456778888888777655432    23345677888888888888766542    345566777788888888888888


Q ss_pred             HHHHHHHHHcCC-CCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC
Q 039873          256 LQVHSQMLKSDI-EPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIR  334 (709)
Q Consensus       256 ~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  334 (709)
                      .+.++.++..+. +.+..++..+...|.+.|++++|.+.|++  ..+...+..++..|.+.|++++|.+.|+++.+.  .
T Consensus        85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~  160 (291)
T 3mkr_A           85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D  160 (291)
T ss_dssp             HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence            888888887764 44566777788899999999999999998  567888999999999999999999999999875  3


Q ss_pred             CCccchHHH----HHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHH
Q 039873          335 PNEFTFAVM----LNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWN  407 (709)
Q Consensus       335 pd~~t~~~l----l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~  407 (709)
                      |+.. ...+    +..+...|++++|..+++.+.+.. +.+..+++.+..+|.+.|++++|...|++..   ..+..+|.
T Consensus       161 p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~  238 (291)
T 3mkr_A          161 EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI  238 (291)
T ss_dssp             TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            6543 2222    233334578888888888888763 5677777888888888888888888888765   23566777


Q ss_pred             HHHHHHHHcCChHH-HHHHHHHHHHCCCCCCHH
Q 039873          408 AMICGYSHHGLGRE-ALTLFQNMLAAEERPNHV  439 (709)
Q Consensus       408 ~li~~~~~~g~~~~-A~~~~~~m~~~g~~pd~~  439 (709)
                      .++..+...|+.++ +.++++++.+  +.|+..
T Consensus       239 ~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~  269 (291)
T 3mkr_A          239 NLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP  269 (291)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence            77877777887765 4677777777  456644

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.59  E-value=4.9e-13  Score=144.33  Aligned_cols=382  Identities=9%  Similarity=-0.070  Sum_probs=225.6

Q ss_pred             CCChhhHHHHHHHHhcCCCchHHHHHHHHHHHh-----C--CCC-chhHHHHHHHHHHhcCChHHHHHHHhhCCC-----
Q 039873          132 EPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKS-----G--LVF-CKYVRNALVELYTKCLDVEMAKRLLDLLPG-----  198 (709)
Q Consensus       132 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----  198 (709)
                      ......|+.+-..+...|+.++|.+.+...++.     +  ..| ...+|+.+..+|...|++++|...+++...     
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            334567888888888999999999999887653     1  122 345788888999999999999888775421     


Q ss_pred             --C----CcccHHHHHHHHHh--CCCccHHHHHHHHHHhCCCCCChh-hHHHHHHH---HhcCCCcHHHHHHHHHHHHcC
Q 039873          199 --Y----DVFEYNSVLNGLIE--NECFRGGVEVLGKMVSGSVRWDSV-TYVNAFGL---SASLKDLKLGLQVHSQMLKSD  266 (709)
Q Consensus       199 --~----~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g  266 (709)
                        +    ...+++.+..++..  .+++++|++.|++..+.  .|+.. .+..+..+   +...++.++|.+.++..++..
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~  205 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN  205 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence              1    22345555555554  45688999999998774  45433 33333333   455677788888888888765


Q ss_pred             CCCchHHHHHHHHHHHh----cCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCcc-
Q 039873          267 IEPDVFINSAMISMYGK----CGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEF-  338 (709)
Q Consensus       267 ~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-  338 (709)
                       +.+..++..+...+.+    .|+.++|.+.+++...   .+...|+.+...|...|++++|+..|++..+.  .|+.. 
T Consensus       206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~  282 (472)
T 4g1t_A          206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY  282 (472)
T ss_dssp             -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred             -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence             4455666666555544    4567788888887543   46678888888999999999999999888764  45432 


Q ss_pred             chHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHH
Q 039873          339 TFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSH  415 (709)
Q Consensus       339 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~  415 (709)
                      ++..+...+...+     ..    ....       ............+..+.|...|++..   ..+..+|..+...|..
T Consensus       283 ~~~~lg~~y~~~~-----~~----~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~  346 (472)
T 4g1t_A          283 LHCQIGCCYRAKV-----FQ----VMNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL  346 (472)
T ss_dssp             HHHHHHHHHHHHH-----HH----HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-----HH----hhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence            3333332221110     00    0000       00011111122234567777777654   3456789999999999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHH
Q 039873          416 HGLGREALTLFQNMLAAEERPNHV--TFVGVLS-ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDE  492 (709)
Q Consensus       416 ~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  492 (709)
                      .|++++|++.|++.......|...  .+..+.. .....|+.++|+..|.+..+   +.|+........         +.
T Consensus       347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~  414 (472)
T 4g1t_A          347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DK  414 (472)
T ss_dssp             TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HH
T ss_pred             hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HH
Confidence            999999999999998854333221  2222222 23567899999999998764   456543332222         22


Q ss_pred             HHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873          493 AEKFMRST-PVK-WDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL  546 (709)
Q Consensus       493 A~~~~~~~-~~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  546 (709)
                      +.++++.. ... .+..+|..|...+...|++++|++.++++++++|.++.+..-+
T Consensus       415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence            23333211 112 3578899999999999999999999999999998877655443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.53  E-value=6.6e-13  Score=130.22  Aligned_cols=219  Identities=13%  Similarity=0.025  Sum_probs=160.9

Q ss_pred             hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHH
Q 039873          303 VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMY  382 (709)
Q Consensus       303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y  382 (709)
                      ..|..+...+...|++++|+..|++..+..  .                                   +..++..+...|
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~-----------------------------------~~~~~~~~~~~~   48 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--K-----------------------------------DITYLNNRAAAE   48 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C-----------------------------------CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--c-----------------------------------cHHHHHHHHHHH
Confidence            345555556666666666666666655443  3                                   344445555555


Q ss_pred             HhcCCHHHHHHHHhhcCC--C----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 039873          383 AKGGNIEAANKVFSDMRY--R----D----IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLG  452 (709)
Q Consensus       383 ~~~g~~~~A~~~f~~~~~--~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g  452 (709)
                      ...|++++|...|++...  |    +    ...|..+...|...|++++|++.|++...  +.|+.       ..+...|
T Consensus        49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~  119 (258)
T 3uq3_A           49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLR  119 (258)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHh
Confidence            556666666666555442  1    1    46777788888888888888888888887  44553       2355668


Q ss_pred             cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHH
Q 039873          453 LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAE  530 (709)
Q Consensus       453 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~  530 (709)
                      ++++|...++.+...  .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++
T Consensus       120 ~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  197 (258)
T 3uq3_A          120 NAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN  197 (258)
T ss_dssp             HHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            888999888887652  2234567888888999999999999988754 2223 58888999999999999999999999


Q ss_pred             HHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          531 YILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       531 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      ++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus       198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999988753

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.52  E-value=7.2e-13  Score=126.61  Aligned_cols=194  Identities=13%  Similarity=0.017  Sum_probs=155.1

Q ss_pred             CCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 039873          369 KEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGV  444 (709)
Q Consensus       369 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l  444 (709)
                      +++...+..+...|.+.|++++|...|++..+   .+...|..+...+.+.|++++|+..|++..+.  .|+ ...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence            56677788888999999999999999998753   46778999999999999999999999999984  564 5678888


Q ss_pred             HHHHhcc-----------ccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 039873          445 LSACGHL-----------GLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWDVVAWHT  511 (709)
Q Consensus       445 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd~~~~~~  511 (709)
                      ...+...           |++++|...++...+.   .| +...+..+..+|...|++++|++.|++. .+..+...|..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence            8888889           9999999999998764   44 4678889999999999999999998753 11267889999


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873          512 LLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK  567 (709)
Q Consensus       512 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  567 (709)
                      +...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999887654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.50  E-value=9.7e-13  Score=129.01  Aligned_cols=236  Identities=12%  Similarity=-0.011  Sum_probs=160.0

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHhccC--CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCC--CCCccchHHHHHH
Q 039873          271 VFINSAMISMYGKCGKFSNAKKVFEGLET--RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAI--RPNEFTFAVMLNS  346 (709)
Q Consensus       271 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~t~~~ll~~  346 (709)
                      ...+..+...|.+.|++++|...|++..+  .+...|..+...|...|++++|++.|++..+...  .|+..        
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------   76 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK--------   76 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence            46788899999999999999999988643  6778899999999999999999999999875321  11110        


Q ss_pred             HhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChHHHHH
Q 039873          347 AAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--RDIITWNAMICGYSHHGLGREALT  424 (709)
Q Consensus       347 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~  424 (709)
                                             ....++..+...|.+.|++++|...|++...  ++       ...+...|++++|++
T Consensus        77 -----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~  126 (258)
T 3uq3_A           77 -----------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELK  126 (258)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHH
T ss_pred             -----------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHH
Confidence                                   0023334445555555555555555555442  22       123445566677777


Q ss_pred             HHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 039873          425 LFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PV  502 (709)
Q Consensus       425 ~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~  502 (709)
                      .++++..  ..|+ ...+..+...+...|++++|...++.+.+..  +.+...+..+...|.+.|++++|.+.+++. ..
T Consensus       127 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  202 (258)
T 3uq3_A          127 KAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK  202 (258)
T ss_dssp             HHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            7777666  3343 3456666666777777777777777766532  234566777777777788888887776643 22


Q ss_pred             CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC------CCCchhHHHHHH
Q 039873          503 KW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMD------PNDVGTYILLSN  548 (709)
Q Consensus       503 ~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~  548 (709)
                      .| +..+|..+...+...|++++|...+++++++.      |++...+..+..
T Consensus       203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK  255 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence            33 37778888888888889999999998888887      766655555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.50  E-value=1.2e-12  Score=129.90  Aligned_cols=240  Identities=8%  Similarity=-0.147  Sum_probs=175.0

Q ss_pred             cCCHhHHHHHHHHHHhCCCC--C-CccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHH
Q 039873          315 NEYFEEALNLFCGMEYEAIR--P-NEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAA  391 (709)
Q Consensus       315 ~g~~~~A~~~~~~m~~~g~~--p-d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A  391 (709)
                      .|++++|+..|+++.+....  | +..++..+...+...|+++.|...+..+++.. +.+..++..+...|...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            45566666666666654211  1 23445555666666666666666666666654 44567778888888889999999


Q ss_pred             HHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhh
Q 039873          392 NKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQI  468 (709)
Q Consensus       392 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~  468 (709)
                      ...|+++..   .+..+|..+...|.+.|++++|++.|+++.+  ..|+.......+..+...|++++|...+.......
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            998887763   4677899999999999999999999999988  45666555555566677899999999998877642


Q ss_pred             CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchh
Q 039873          469 GIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGT  542 (709)
Q Consensus       469 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  542 (709)
                        +++...+ .++..+...++.++|.+.+++. ...|+     ..+|..+...+...|++++|...++++++.+|++...
T Consensus       175 --~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  251 (275)
T 1xnf_A          175 --DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  251 (275)
T ss_dssp             --CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             --CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence              3333344 4777788888899999988754 22232     5778888999999999999999999999999977544


Q ss_pred             HHHHHHHhhhcCCchhHHHHH
Q 039873          543 YILLSNMYAKEKRWDGVSKIR  563 (709)
Q Consensus       543 ~~~l~~~~~~~g~~~~a~~~~  563 (709)
                      +   ..++...|++++|.+.+
T Consensus       252 ~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          252 H---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             H---HHHHHHHHHHHHC----
T ss_pred             H---HHHHHHHHHHHhhHHHH
Confidence            4   66778889998887765

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.47  E-value=4.7e-12  Score=135.41  Aligned_cols=372  Identities=8%  Similarity=-0.020  Sum_probs=197.1

Q ss_pred             HHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHhhCCCCCcccHHHHHHHHHhCC----
Q 039873          143 SSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDV---EMAKRLLDLLPGYDVFEYNSVLNGLIENE----  215 (709)
Q Consensus       143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g----  215 (709)
                      ..+.+.|++++|.+++..+.+.|.   ...+..|-.+|...|+.   ++|...|++..+.++..+..+...+...+    
T Consensus        11 ~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~   87 (452)
T 3e4b_A           11 NEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE   87 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence            334455667777777777666652   22333444555556666   77777777766656666666666555554    


Q ss_pred             -CccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCc---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC----h
Q 039873          216 -CFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDL---KLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGK----F  287 (709)
Q Consensus       216 -~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----~  287 (709)
                       ++++|+..|++..+.|...   .+..+...+...+..   ..+.+.+....+.|   +......|..+|...+.    .
T Consensus        88 ~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~  161 (452)
T 3e4b_A           88 AEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL  161 (452)
T ss_dssp             HHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred             cCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence             5667777777777655322   444444444433322   23444444444444   23445556666666553    3


Q ss_pred             HHHHHHHHhccCCCHhhHHHHHHHHHHcC---CHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHH
Q 039873          288 SNAKKVFEGLETRNVVLWTAMVAACFQNE---YFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIE  364 (709)
Q Consensus       288 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~  364 (709)
                      +.+..+++.....+...+..|...|...|   +.++|++.|++..+.|                                
T Consensus       162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--------------------------------  209 (452)
T 3e4b_A          162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--------------------------------  209 (452)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------------------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--------------------------------
Confidence            44444555555555556666666666666   6666666666665544                                


Q ss_pred             HhCCCCChhHHhHHHhHHHhc----CCHHHHHHHHhhcCCCChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCC
Q 039873          365 KSGFKEHLIVGNALINMYAKG----GNIEAANKVFSDMRYRDIITWNAMICG-Y--SHHGLGREALTLFQNMLAAEERPN  437 (709)
Q Consensus       365 ~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~f~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~pd  437 (709)
                          +++...+..|..+|...    ++.++|...|++....+...+..|... |  ...+++++|++.|++..+.|   +
T Consensus       210 ----~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~  282 (452)
T 3e4b_A          210 ----TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---Q  282 (452)
T ss_dssp             ----CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---C
T ss_pred             ----CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---C
Confidence                22222223333444332    566677777766553345566666555 3  34677788888888777765   4


Q ss_pred             HHHHHHHHHHHhccc-----cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHH
Q 039873          438 HVTFVGVLSACGHLG-----LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK----AGLLDEAEKFMRSTPVKWDVVA  508 (709)
Q Consensus       438 ~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~pd~~~  508 (709)
                      ...+..+...+. .|     ++++|..+|+...     .-+...+..|..+|..    ..++++|.+.|++..-.-+...
T Consensus       283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A  356 (452)
T 3e4b_A          283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA  356 (452)
T ss_dssp             HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH
T ss_pred             HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH
Confidence            445555555554 44     7888888777653     3455666677777765    3378888888775422223444


Q ss_pred             HHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          509 WHTLLNASRV----HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       509 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ...|...|..    ..|.++|...++++.+.++.+.......+......++.++|.++.++...
T Consensus       357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~  420 (452)
T 3e4b_A          357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA  420 (452)
T ss_dssp             HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            4555555542    45888899999888887765443333333333344566677777666544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.46  E-value=4.6e-12  Score=125.51  Aligned_cols=251  Identities=11%  Similarity=0.011  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccc----hHHHHH
Q 039873          273 INSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFT----FAVMLN  345 (709)
Q Consensus       273 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t----~~~ll~  345 (709)
                      +.......|.+.|++++|...|++..+   .+...|..+...|...|++++|++.|++..+..  ++...    +..+..
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGK   82 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHH
Confidence            344556667777777777777776543   244567777777777777777777777776632  22222    455555


Q ss_pred             HHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHH
Q 039873          346 SAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREA  422 (709)
Q Consensus       346 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A  422 (709)
                      .+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+   .+...|..+...+...+++++|
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666543 33445555556666666666666666655542   2334444444122223355555


Q ss_pred             HHHHHHHHHCCCCCC-HHHHHHHHHHHhcccc---HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 039873          423 LTLFQNMLAAEERPN-HVTFVGVLSACGHLGL---VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMR  498 (709)
Q Consensus       423 ~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  498 (709)
                      ++.|++..+.  .|+ ...+..+...+...|+   +++|...++.+.+...-.|+.. -                     
T Consensus       162 ~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~---------------------  217 (272)
T 3u4t_A          162 DSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K---------------------  217 (272)
T ss_dssp             HHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H---------------------
T ss_pred             HHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h---------------------
Confidence            5555555552  233 2333333333333333   3334444433332211111100 0                     


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC
Q 039873          499 STPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK  554 (709)
Q Consensus       499 ~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  554 (709)
                          ..-..+|..+...+...|++++|.+.++++++++|+++.....+..+....+
T Consensus       218 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          218 ----DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence                0012466777788888999999999999999999999877777666554443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.42  E-value=1.2e-11  Score=122.50  Aligned_cols=239  Identities=13%  Similarity=-0.038  Sum_probs=168.7

Q ss_pred             hCCCccHHHHHHHHHHhCCCCC---ChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHH
Q 039873          213 ENECFRGGVEVLGKMVSGSVRW---DSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSN  289 (709)
Q Consensus       213 ~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~  289 (709)
                      ..|++++|+..|+++.+.....   +..++..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            3567788888888887753211   24467777778888888888888888888764 4567788888888888888888


Q ss_pred             HHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHh
Q 039873          290 AKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKS  366 (709)
Q Consensus       290 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~  366 (709)
                      |...|++..+   .+...|..+...|.+.|++++|+..|+++.+.  .|+.......+..+...|+++.|...+......
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            8888888754   35678888888888999999999999888764  455554555555556678888888888777765


Q ss_pred             CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-
Q 039873          367 GFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRD-------IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNH-  438 (709)
Q Consensus       367 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-  438 (709)
                      . +++...+ .++..+...++.++|...+.+....+       ..+|..+...|...|++++|...|++....  .|+. 
T Consensus       174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~  249 (275)
T 1xnf_A          174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNF  249 (275)
T ss_dssp             S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTC
T ss_pred             C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhH
Confidence            4 3333333 36667777788888888888776432       467777888888888888888888888773  4532 


Q ss_pred             HHHHHHHHHHhccccHHHHHHHH
Q 039873          439 VTFVGVLSACGHLGLVQEGFYYL  461 (709)
Q Consensus       439 ~t~~~ll~a~~~~g~~~~a~~~~  461 (709)
                      ..+   ..++...|++++|.+.+
T Consensus       250 ~~~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          250 VEH---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHH---HHHHHHHHHHHHC----
T ss_pred             HHH---HHHHHHHHHHHhhHHHH
Confidence            222   33455667777766554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.41  E-value=1.4e-11  Score=120.49  Aligned_cols=196  Identities=10%  Similarity=-0.009  Sum_probs=142.7

Q ss_pred             hhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039873          372 LIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSAC  448 (709)
Q Consensus       372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~  448 (709)
                      ...+..+...|...|++++|...|+++.   ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            3455666677777777777777777654   2356677777777888888888888888877642 23456677777777


Q ss_pred             hccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHH
Q 039873          449 GHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFG  525 (709)
Q Consensus       449 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a  525 (709)
                      ...|++++|..+++.+.+ .+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            778888888888877654 22444 3456777777888888888888877643 1223 467777788888888888888


Q ss_pred             HHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          526 RRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       526 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      ...++++++..|++...+..++.+|...|++++|.+.++.+.+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            88888888888888778888888888888888888888887653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.40  E-value=9.2e-11  Score=116.27  Aligned_cols=224  Identities=9%  Similarity=-0.104  Sum_probs=114.2

Q ss_pred             HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCChhHHhH
Q 039873          302 VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAG----LSALRHGDLLHAHIEKSGFKEHLIVGNA  377 (709)
Q Consensus       302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~  377 (709)
                      ..++..+...|...|++++|++.|++..+.+   +...+..+...+..    .+++++|...+....+.+   +...+..
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~   79 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL   79 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            3444444555555555555555555554411   22233333333333    444444444444444433   3444445


Q ss_pred             HHhHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039873          378 LINMYAK----GGNIEAANKVFSDMRY-RDIITWNAMICGYSH----HGLGREALTLFQNMLAAEERPNHVTFVGVLSAC  448 (709)
Q Consensus       378 li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~  448 (709)
                      +..+|..    .|++++|...|++..+ .+..++..+...|..    .+++++|++.|++..+.+   +...+..+...+
T Consensus        80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~  156 (273)
T 1ouv_A           80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY  156 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence            5555555    5666666666555432 244555556666665    666666666666666543   334444444445


Q ss_pred             hc----cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 039873          449 GH----LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK----AGLLDEAEKFMRSTPVKWDVVAWHTLLNASRV--  518 (709)
Q Consensus       449 ~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~--  518 (709)
                      ..    .+++++|...|+...+. +   +...+..+..+|.+    .+++++|.+.+++.--..+...+..+...+..  
T Consensus       157 ~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~  232 (273)
T 1ouv_A          157 DAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE  232 (273)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence            44    56666666666665442 1   23445555555555    55666665555432111124445555555555  


Q ss_pred             --cCCchHHHHHHHHHHhcCCC
Q 039873          519 --HQNYGFGRRIAEYILHMDPN  538 (709)
Q Consensus       519 --~g~~~~a~~~~~~~~~~~p~  538 (709)
                        .+++++|.+.++++.+.+|+
T Consensus       233 ~~~~~~~~A~~~~~~a~~~~~~  254 (273)
T 1ouv_A          233 GVTRNEKQAIENFKKGCKLGAK  254 (273)
T ss_dssp             SSSCCSTTHHHHHHHHHHHTCH
T ss_pred             CcccCHHHHHHHHHHHHHcCCH
Confidence              55666666666666665554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.40  E-value=2.5e-11  Score=116.09  Aligned_cols=196  Identities=11%  Similarity=0.017  Sum_probs=146.4

Q ss_pred             ChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039873          371 HLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSA  447 (709)
Q Consensus       371 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a  447 (709)
                      +..++..+...|...|++++|...|+++.   ..+...|..+...|...|++++|++.|+++.... +.+..++..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            44556677777778888888888887655   2356677778888888888888888888887742 3355677777777


Q ss_pred             Hhcc-ccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCch
Q 039873          448 CGHL-GLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYG  523 (709)
Q Consensus       448 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~  523 (709)
                      +... |++++|...++.+.+ .+..|+ ...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            8888 888888888888765 233343 466777888888888888888887643 2223 3777788888888888888


Q ss_pred             HHHHHHHHHHhcCC-CCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          524 FGRRIAEYILHMDP-NDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       524 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +|...++++++..| ++...+..+...+...|+.+++..+++.+.+
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            88888888888888 7777888888888888888888888888764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.40  E-value=1.3e-11  Score=128.03  Aligned_cols=242  Identities=11%  Similarity=0.039  Sum_probs=163.0

Q ss_pred             hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-ccchHHHHHHHhccCC-hhHHHHHHHHHHHhCCCCChhHHhHHHh
Q 039873          303 VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN-EFTFAVMLNSAAGLSA-LRHGDLLHAHIEKSGFKEHLIVGNALIN  380 (709)
Q Consensus       303 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~li~  380 (709)
                      ..|+.+...+.+.|++++|++.|++.++.  .|+ ...|..+..++...|+ +++|...+..+++.. +.+..+|+.+..
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            34555555555555555555555555542  232 2334444445555554 555555555555544 345566677777


Q ss_pred             HHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cccHH
Q 039873          381 MYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGH-LGLVQ  455 (709)
Q Consensus       381 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~-~g~~~  455 (709)
                      +|.+.|++++|+..|+++.   ..+...|..+..++.+.|++++|++.|+++++.  .| +...|..+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence            7777777777777777765   346678888888888888888888888888873  45 45577777777777 55546


Q ss_pred             HH-----HHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC------
Q 039873          456 EG-----FYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAG--LLDEAEKFMRSTPVKWD-VVAWHTLLNASRVHQ------  520 (709)
Q Consensus       456 ~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~pd-~~~~~~ll~~~~~~g------  520 (709)
                      +|     +..++..++.   .| +...|..+..+|.+.|  ++++|.+.++++...|+ ...+..+...+...|      
T Consensus       253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~  329 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN  329 (382)
T ss_dssp             HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence            66     4677776553   34 3567888888888877  58888888776644555 677888888887764      


Q ss_pred             ---CchHHHHHHHHH-HhcCCCCchhHHHHHHHhhh
Q 039873          521 ---NYGFGRRIAEYI-LHMDPNDVGTYILLSNMYAK  552 (709)
Q Consensus       521 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~  552 (709)
                         ..++|+++++++ .+++|.....|..++..+..
T Consensus       330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence               258899999999 89999888888877766554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.39  E-value=5.1e-11  Score=117.84  Aligned_cols=227  Identities=7%  Similarity=-0.083  Sum_probs=180.3

Q ss_pred             hhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC--CC----HhhHHHHH
Q 039873          236 SVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET--RN----VVLWTAMV  309 (709)
Q Consensus       236 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li  309 (709)
                      ...+......+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|++..+  ++    ..+|..+.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            3455667778889999999999999999875 44566888999999999999999999998765  22    23488999


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHH-hHHHhcCCH
Q 039873          310 AACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALI-NMYAKGGNI  388 (709)
Q Consensus       310 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li-~~y~~~g~~  388 (709)
                      ..|...|++++|++.|++..+.. +.+...+..+...+...|+++.|...+..+++.. +.+..++..+. ..|. .+++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~  158 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY  158 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence            99999999999999999998753 2245678888899999999999999999988763 55667777777 5555 4699


Q ss_pred             HHHHHHHhhcCC---CChhhHHHHHHHHHHcCC---hHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHhccccHH
Q 039873          389 EAANKVFSDMRY---RDIITWNAMICGYSHHGL---GREALTLFQNMLAAE-ERPNH------VTFVGVLSACGHLGLVQ  455 (709)
Q Consensus       389 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~pd~------~t~~~ll~a~~~~g~~~  455 (709)
                      ++|...|+++.+   .+...|..+...+...|+   +++|...|++..+.. -.|+.      .++..+...+...|+++
T Consensus       159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  238 (272)
T 3u4t_A          159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV  238 (272)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence            999999998763   346788888888888888   888999999987632 12432      35666777777788888


Q ss_pred             HHHHHHHHHHH
Q 039873          456 EGFYYLNHLMK  466 (709)
Q Consensus       456 ~a~~~~~~~~~  466 (709)
                      +|.+.++.+.+
T Consensus       239 ~A~~~~~~al~  249 (272)
T 3u4t_A          239 KADAAWKNILA  249 (272)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88888887765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.39  E-value=1.1e-11  Score=120.40  Aligned_cols=170  Identities=14%  Similarity=0.064  Sum_probs=83.6

Q ss_pred             HhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 039873          375 GNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHL  451 (709)
Q Consensus       375 ~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~  451 (709)
                      +..+...|.+.|++++|...|+++.   ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...
T Consensus        60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~  138 (243)
T 2q7f_A           60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKL  138 (243)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence            3334444444444444444444433   1234445555555555555555555555555432 22334444555555555


Q ss_pred             ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHH
Q 039873          452 GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIA  529 (709)
Q Consensus       452 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~  529 (709)
                      |++++|...++.+.+.  .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...+
T Consensus       139 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  216 (243)
T 2q7f_A          139 EQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML  216 (243)
T ss_dssp             SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred             ccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence            5555555555555432  1123344555555555555555555554432 1112 3445555555555556666666666


Q ss_pred             HHHHhcCCCCchhHHHHH
Q 039873          530 EYILHMDPNDVGTYILLS  547 (709)
Q Consensus       530 ~~~~~~~p~~~~~~~~l~  547 (709)
                      +++++++|++...+..+.
T Consensus       217 ~~~~~~~p~~~~~~~~~~  234 (243)
T 2q7f_A          217 DKAIDIQPDHMLALHAKK  234 (243)
T ss_dssp             HHHHHHCTTCHHHHHHHT
T ss_pred             HHHHccCcchHHHHHHHH
Confidence            666665555554444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.39  E-value=6.7e-11  Score=115.55  Aligned_cols=204  Identities=10%  Similarity=-0.031  Sum_probs=144.5

Q ss_pred             HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhH
Q 039873          302 VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINM  381 (709)
Q Consensus       302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~  381 (709)
                      ...|..+...+...|++++|++.|+++.+..  |                                  .+..++..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~----------------------------------~~~~~~~~la~~   80 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--P----------------------------------SSADAHAALAVV   80 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--C----------------------------------ChHHHHHHHHHH
Confidence            4667777778888888888888887776532  2                                  223344455555


Q ss_pred             HHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHH
Q 039873          382 YAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEG  457 (709)
Q Consensus       382 y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a  457 (709)
                      |.+.|++++|.+.|+++.   ..+...|..+...|...|++++|+++|+++...+..|+ ...+..+...+...|++++|
T Consensus        81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  160 (252)
T 2ho1_A           81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA  160 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence            666666666666666543   23455677777777777777788887777766334453 44666777777888888888


Q ss_pred             HHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 039873          458 FYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHM  535 (709)
Q Consensus       458 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  535 (709)
                      ...++.+.+..  +.+...+..+...|.+.|++++|.+.++.. ...| +...|..+...+...|+.+.|.+.++++.+.
T Consensus       161 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          161 KEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            88888876532  234667788888888888888888887753 2233 4777888888889999999999999999999


Q ss_pred             CCCCchhH
Q 039873          536 DPNDVGTY  543 (709)
Q Consensus       536 ~p~~~~~~  543 (709)
                      .|+++...
T Consensus       239 ~p~~~~~~  246 (252)
T 2ho1_A          239 YPGSLEYQ  246 (252)
T ss_dssp             CTTSHHHH
T ss_pred             CCCCHHHH
Confidence            99876544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.39  E-value=1.2e-10  Score=115.38  Aligned_cols=223  Identities=9%  Similarity=-0.079  Sum_probs=191.5

Q ss_pred             ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHH
Q 039873          337 EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK----GGNIEAANKVFSDMRY-RDIITWNAMIC  411 (709)
Q Consensus       337 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~  411 (709)
                      ..++..+...+...|++++|.+.+....+.   .+...+..+...|..    .|++++|...|++..+ .+..++..+..
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~   82 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN   82 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            345566677788889999999999999983   456778889999999    9999999999998764 47788999999


Q ss_pred             HHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 039873          412 GYSH----HGLGREALTLFQNMLAAEERPNHVTFVGVLSACGH----LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGL  483 (709)
Q Consensus       412 ~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~  483 (709)
                      .|..    .+++++|++.|++..+.+   +...+..+...+..    .+++++|..+|+...+. +   +...+..+..+
T Consensus        83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~  155 (273)
T 1ouv_A           83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSL  155 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred             HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHH
Confidence            9999    999999999999999875   67788888888888    99999999999998773 3   56678888999


Q ss_pred             HHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh---
Q 039873          484 LSK----AGLLDEAEKFMRSTPVKWDVVAWHTLLNASRV----HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK---  552 (709)
Q Consensus       484 ~~~----~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---  552 (709)
                      |.+    .+++++|.+.+++.--..+...+..+...+..    .+++++|...++++.+.+|  +..+..|+.+|.+   
T Consensus       156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~  233 (273)
T 1ouv_A          156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG  233 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence            988    99999999998854222467888888889999    9999999999999999876  5788999999999   


Q ss_pred             -cCCchhHHHHHHHHHhCCC
Q 039873          553 -EKRWDGVSKIRKLMKVRKV  571 (709)
Q Consensus       553 -~g~~~~a~~~~~~m~~~~~  571 (709)
                       .|++++|.+.+++..+.+.
T Consensus       234 ~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          234 VTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             SSCCSTTHHHHHHHHHHHTC
T ss_pred             cccCHHHHHHHHHHHHHcCC
Confidence             9999999999999987653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.39  E-value=1.1e-11  Score=120.31  Aligned_cols=197  Identities=11%  Similarity=0.060  Sum_probs=154.1

Q ss_pred             CChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039873          370 EHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLS  446 (709)
Q Consensus       370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~  446 (709)
                      .....+..+...|.+.|++++|...|+++.+   .+...|..+...|...|++++|++.|+++.... +.+..++..+..
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            3455667778888899999999999998753   467789999999999999999999999998853 335678888889


Q ss_pred             HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchH
Q 039873          447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGF  524 (709)
Q Consensus       447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~  524 (709)
                      .+...|++++|...++.+.+..  +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999987742  345678889999999999999999998754 2223 58889999999999999999


Q ss_pred             HHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          525 GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       525 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      |+..++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus       178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.38  E-value=1.8e-11  Score=130.88  Aligned_cols=344  Identities=10%  Similarity=-0.037  Sum_probs=220.0

Q ss_pred             HHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCc---HHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 039873          206 SVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDL---KLGLQVHSQMLKSDIEPDVFINSAMISMYG  282 (709)
Q Consensus       206 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~  282 (709)
                      .+...+.+.|++++|+++|++..+.|-   ...+..+...+...|+.   ++|.+.++...+.    +...+..|..++.
T Consensus         8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~   80 (452)
T 3e4b_A            8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA   80 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence            356677888999999999999887653   33344444455556766   8888888888754    4555666666555


Q ss_pred             hcC-----ChHHHHHHHHhccCC-CHhhHHHHHHHHHHcCCHh---HHHHHHHHHHhCCCCCCccchHHHHHHHhccCCh
Q 039873          283 KCG-----KFSNAKKVFEGLETR-NVVLWTAMVAACFQNEYFE---EALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSAL  353 (709)
Q Consensus       283 ~~g-----~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~  353 (709)
                      ..|     +.++|...|++..++ +...+..|...|...+..+   ++.+.+.+....|   +......+...+...+.+
T Consensus        81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~  157 (452)
T 3e4b_A           81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY  157 (452)
T ss_dssp             TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence            554     678899988887654 4567778888887766544   3455555544443   334455566666666655


Q ss_pred             hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcC---CHHHHHHHHhhcCC---CChhhHHHHHHHHHHc----CChHHHH
Q 039873          354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGG---NIEAANKVFSDMRY---RDIITWNAMICGYSHH----GLGREAL  423 (709)
Q Consensus       354 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~----g~~~~A~  423 (709)
                      +.+..-.....+.-...++..+..|..+|.+.|   +.++|.+.|++..+   ++...+..|...|...    +++++|+
T Consensus       158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~  237 (452)
T 3e4b_A          158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ  237 (452)
T ss_dssp             GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence            544444333333323334447888888999999   88899999887653   3344446677777554    6889999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHH-H--hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC-----CHHHHHH
Q 039873          424 TLFQNMLAAEERPNHVTFVGVLSA-C--GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAG-----LLDEAEK  495 (709)
Q Consensus       424 ~~~~~m~~~g~~pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~  495 (709)
                      +.|++.. .|   +...+..+... +  ...+++++|..+|+...+ .|   +...+..|..+|. .|     ++++|.+
T Consensus       238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~  308 (452)
T 3e4b_A          238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEA  308 (452)
T ss_dssp             HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred             HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence            9999886 33   33444444444 3  458899999999998865 34   5667777888887 55     8999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh----cCCchhHHHHHHHHH
Q 039873          496 FMRSTPVKWDVVAWHTLLNASRV----HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK----EKRWDGVSKIRKLMK  567 (709)
Q Consensus       496 ~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~  567 (709)
                      .|++.. .-++..+..|...|..    ..|.++|...++++.+.+  ++.....|+.+|..    ..+.++|...++...
T Consensus       309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~  385 (452)
T 3e4b_A          309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK  385 (452)
T ss_dssp             HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            998776 5567777777766665    348899999999988754  45678888888875    458889999999888


Q ss_pred             hCCC
Q 039873          568 VRKV  571 (709)
Q Consensus       568 ~~~~  571 (709)
                      +.|.
T Consensus       386 ~~g~  389 (452)
T 3e4b_A          386 AQDT  389 (452)
T ss_dssp             TTCC
T ss_pred             HCCC
Confidence            7764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.36  E-value=3.1e-11  Score=115.12  Aligned_cols=191  Identities=16%  Similarity=0.038  Sum_probs=93.4

Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHH
Q 039873          269 PDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLN  345 (709)
Q Consensus       269 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~  345 (709)
                      ++...+..+...+.+.|++++|...|++..+   .+...|..+...+.+.|++++|+..|++..+.  .|+         
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~---------   71 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPR---------   71 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---------
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------
Confidence            3444555555555666666666666655432   24455555555555566666666555555542  232         


Q ss_pred             HHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhc-----------CCHHHHHHHHhhcCC---CChhhHHHHHH
Q 039873          346 SAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKG-----------GNIEAANKVFSDMRY---RDIITWNAMIC  411 (709)
Q Consensus       346 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~~~~---~~~~~~~~li~  411 (709)
                                               +...+..+...|.+.           |++++|...|++..+   .+...|..+..
T Consensus        72 -------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~  126 (217)
T 2pl2_A           72 -------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL  126 (217)
T ss_dssp             -------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             -------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence                                     222333333333333           555555555555431   23445555556


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHH
Q 039873          412 GYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLD  491 (709)
Q Consensus       412 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  491 (709)
                      .|...|++++|++.|++..+..  .+...+..+..++...|++++|...|+.+.+.  .+.+...+..+..++.+.|+++
T Consensus       127 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~  202 (217)
T 2pl2_A          127 VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAE  202 (217)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-----
T ss_pred             HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHH
Confidence            6666666666666666665544  44555555555666666666666666655442  1123345555555555666666


Q ss_pred             HHHHHHHh
Q 039873          492 EAEKFMRS  499 (709)
Q Consensus       492 ~A~~~~~~  499 (709)
                      +|.+.+++
T Consensus       203 ~A~~~~~~  210 (217)
T 2pl2_A          203 EAARAAAL  210 (217)
T ss_dssp             --------
T ss_pred             HHHHHHHH
Confidence            66555544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.35  E-value=1e-10  Score=111.79  Aligned_cols=208  Identities=11%  Similarity=0.004  Sum_probs=142.5

Q ss_pred             CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHh
Q 039873          301 NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALIN  380 (709)
Q Consensus       301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~  380 (709)
                      +...|..+...+...|++++|++.|+++.+..  |                                  .+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~   50 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAE   50 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHH
Confidence            34566677777777777777777777766532  2                                  22334445555


Q ss_pred             HHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHH
Q 039873          381 MYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHH-GLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQ  455 (709)
Q Consensus       381 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~  455 (709)
                      .|...|++++|...|+++.   ..+..+|..+...|... |++++|++.|+++.+.+..|+ ...+..+...+...|+++
T Consensus        51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  130 (225)
T 2vq2_A           51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG  130 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence            5666666666666666543   23455677777777777 788888888877776333444 456677777778888888


Q ss_pred             HHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 039873          456 EGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW--DVVAWHTLLNASRVHQNYGFGRRIAEYI  532 (709)
Q Consensus       456 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p--d~~~~~~ll~~~~~~g~~~~a~~~~~~~  532 (709)
                      +|...++.+.+.  .+.+...+..+...|.+.|++++|.+.+++. ...|  +...|..+...+...|+.+.+...++.+
T Consensus       131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            888888877653  1233667778888888888888888887643 1223  5667777777788899999999999999


Q ss_pred             HhcCCCCchhHHHH
Q 039873          533 LHMDPNDVGTYILL  546 (709)
Q Consensus       533 ~~~~p~~~~~~~~l  546 (709)
                      .+..|+++.....+
T Consensus       209 ~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          209 QANFPYSEELQTVL  222 (225)
T ss_dssp             HHHCTTCHHHHHHH
T ss_pred             HHhCCCCHHHHHHh
Confidence            88898887655443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.35  E-value=2.5e-11  Score=127.68  Aligned_cols=268  Identities=14%  Similarity=0.057  Sum_probs=167.7

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHhccC--C-C----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHH
Q 039873          270 DVFINSAMISMYGKCGKFSNAKKVFEGLET--R-N----VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAV  342 (709)
Q Consensus       270 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~  342 (709)
                      ....+..+...+.+.|++++|...|++..+  + +    ...|..+...|...|++++|+..|++......         
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------   78 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR---------   78 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---------
Confidence            344455555666666666666666665542  1 2    23455566666666666666666665442100         


Q ss_pred             HHHHHhccCChhHHHHHHHHHHHhCC-CCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHH
Q 039873          343 MLNSAAGLSALRHGDLLHAHIEKSGF-KEHLIVGNALINMYAKGGNIEAANKVFSDMRY-----RD----IITWNAMICG  412 (709)
Q Consensus       343 ll~~~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~  412 (709)
                                            +.+- +....++..+...|...|++++|...|++...     ++    ..++..+...
T Consensus        79 ----------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  136 (406)
T 3sf4_A           79 ----------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV  136 (406)
T ss_dssp             ----------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ----------------------hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence                                  0010 01123445556666666666666666665442     11    2366667777


Q ss_pred             HHHcCC--------------------hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 039873          413 YSHHGL--------------------GREALTLFQNMLAA----EERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQ  467 (709)
Q Consensus       413 ~~~~g~--------------------~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  467 (709)
                      |...|+                    +++|++.+++....    +-.|. ..++..+...+...|++++|...++...+.
T Consensus       137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (406)
T 3sf4_A          137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI  216 (406)
T ss_dssp             HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred             HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            777777                    77777777765431    11222 235666777778888888888888877653


Q ss_pred             hCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 039873          468 IGIVPG----LEHYTCIVGLLSKAGLLDEAEKFMRST----PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHM  535 (709)
Q Consensus       468 ~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  535 (709)
                      ..-.++    ...+..+...|...|++++|.+.+++.    +..++    ..++..+...+...|++++|...+++++++
T Consensus       217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  296 (406)
T 3sf4_A          217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  296 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            322222    236777888888888888888876642    10112    456777778888889999999988888776


Q ss_pred             CCCC------chhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          536 DPND------VGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       536 ~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      .+..      ..++..++.+|...|++++|.+.+++..+
T Consensus       297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4322      45777888899999999999998888765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.33  E-value=1e-11  Score=131.15  Aligned_cols=265  Identities=11%  Similarity=0.003  Sum_probs=167.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhccC---CCH----hhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHH
Q 039873          273 INSAMISMYGKCGKFSNAKKVFEGLET---RNV----VLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLN  345 (709)
Q Consensus       273 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~  345 (709)
                      .+..+...+...|++++|...|++..+   .+.    ..|..+...|...|++++|+..|++..+..-            
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------  117 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK------------  117 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------------
Confidence            344455566667777777777766543   122    3566666666667777777776666543100            


Q ss_pred             HHhccCChhHHHHHHHHHHHhC-CCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---------CChhhHHHHHHHHHH
Q 039873          346 SAAGLSALRHGDLLHAHIEKSG-FKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---------RDIITWNAMICGYSH  415 (709)
Q Consensus       346 ~~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~  415 (709)
                                         +.+ .+....++..+...|...|++++|...|++...         ....+|..+...|..
T Consensus       118 -------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  178 (411)
T 4a1s_A          118 -------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA  178 (411)
T ss_dssp             -------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             -------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence                               000 011223445555566666666666666655431         123356666677777


Q ss_pred             cCC-----------------hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC
Q 039873          416 HGL-----------------GREALTLFQNMLAA----EERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG  473 (709)
Q Consensus       416 ~g~-----------------~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~  473 (709)
                      .|+                 +++|++.+++..+.    +-.|. ..++..+...+...|++++|...++...+...-.++
T Consensus       179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  258 (411)
T 4a1s_A          179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD  258 (411)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence            777                 77777777665431    11121 235666667777888888888888777553221122


Q ss_pred             ----hHHHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC---
Q 039873          474 ----LEHYTCIVGLLSKAGLLDEAEKFMRSTP-V---KWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN---  538 (709)
Q Consensus       474 ----~~~~~~li~~~~~~g~~~~A~~~~~~~~-~---~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---  538 (709)
                          ...+..+...|...|++++|.+.+++.- .   ..+    ..+|..+...+...|++++|...+++++++.+.   
T Consensus       259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  338 (411)
T 4a1s_A          259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD  338 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence                2367778888888888888888765431 0   111    456777888888999999999999988876432   


Q ss_pred             ---CchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          539 ---DVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       539 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                         ....+..++.+|...|++++|.+.+++..+
T Consensus       339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence               234788899999999999999999998865

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.33  E-value=5.9e-11  Score=109.81  Aligned_cols=164  Identities=13%  Similarity=0.047  Sum_probs=124.8

Q ss_pred             ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHH
Q 039873          402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCI  480 (709)
Q Consensus       402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l  480 (709)
                      +...|..+...|.+.|++++|++.|++..+  +.|+ ..++..+...+.+.|++++|...+......  .+.+...+..+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~   79 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL   79 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence            445677777777777777888888877777  3453 456777777777788888888877776553  22334566667


Q ss_pred             HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchh
Q 039873          481 VGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDG  558 (709)
Q Consensus       481 i~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  558 (709)
                      ...+...+++++|.+.+++. ...| +...|..+...+...|++++|++.++++++++|.++.++..++.+|.+.|++++
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            77778888888888776643 2233 477788888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 039873          559 VSKIRKLMKVR  569 (709)
Q Consensus       559 a~~~~~~m~~~  569 (709)
                      |.+.+++..+.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            99999888764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.32  E-value=5.2e-11  Score=121.39  Aligned_cols=198  Identities=15%  Similarity=0.056  Sum_probs=139.5

Q ss_pred             hhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCC--------------------hHHH
Q 039873          372 LIVGNALINMYAKGGNIEAANKVFSDMRY-----RD----IITWNAMICGYSHHGL--------------------GREA  422 (709)
Q Consensus       372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A  422 (709)
                      ..++..+...|...|++++|...|++..+     ++    ..++..+...|...|+                    +++|
T Consensus        83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A  162 (338)
T 3ro2_A           83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA  162 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence            34455666677777777777777766541     12    2366777777777777                    7888


Q ss_pred             HHHHHHHHHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHH
Q 039873          423 LTLFQNMLAA----EERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LEHYTCIVGLLSKAGLLDEA  493 (709)
Q Consensus       423 ~~~~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A  493 (709)
                      ++.+++....    +-.|. ..++..+...+...|++++|...++...+...-.++    ...+..+...|.+.|++++|
T Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  242 (338)
T 3ro2_A          163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  242 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence            8877776532    11121 235666777788888899988888887653222222    23677888889999999999


Q ss_pred             HHHHHhC----CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------chhHHHHHHHhhhcCCchhH
Q 039873          494 EKFMRST----PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND------VGTYILLSNMYAKEKRWDGV  559 (709)
Q Consensus       494 ~~~~~~~----~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a  559 (709)
                      .+.+++.    +..++    ..++..+...+...|++++|...+++++++.+..      ..++..++.+|.+.|++++|
T Consensus       243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  322 (338)
T 3ro2_A          243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  322 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            8887643    11112    5567778888999999999999999988764322      34788999999999999999


Q ss_pred             HHHHHHHHhC
Q 039873          560 SKIRKLMKVR  569 (709)
Q Consensus       560 ~~~~~~m~~~  569 (709)
                      .+.+++..+.
T Consensus       323 ~~~~~~a~~~  332 (338)
T 3ro2_A          323 MHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999998763

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.32  E-value=1.8e-11  Score=131.75  Aligned_cols=208  Identities=11%  Similarity=-0.015  Sum_probs=168.5

Q ss_pred             hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCH-HHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 039873          354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNI-EAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNM  429 (709)
Q Consensus       354 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  429 (709)
                      +.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++..   ..+...|..+...|.+.|++++|++.|++.
T Consensus        85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  163 (474)
T 4abn_A           85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA  163 (474)
T ss_dssp             HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33444444433322 34566777777788888888 88888888765   235678899999999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHhcc---------ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc--------CCHHH
Q 039873          430 LAAEERPNHVTFVGVLSACGHL---------GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA--------GLLDE  492 (709)
Q Consensus       430 ~~~g~~pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~  492 (709)
                      .+  +.|+...+..+...+...         |++++|...++.+.+..  +.+...|..+..+|...        |++++
T Consensus       164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            88  568878888888889888         99999999999987642  33467888899999888        99999


Q ss_pred             HHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHH
Q 039873          493 AEKFMRST-PVKW----DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLM  566 (709)
Q Consensus       493 A~~~~~~~-~~~p----d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  566 (709)
                      |.+.|++. .+.|    +...|..+...+...|++++|++.++++++++|++...+..+..++...|++++|.+.+..+
T Consensus       240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99998754 3345    68899999999999999999999999999999999999999999999999999998765444

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.31  E-value=6.4e-11  Score=122.69  Aligned_cols=224  Identities=10%  Similarity=0.048  Sum_probs=189.5

Q ss_pred             chHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCC-HHHHHHHHhhcCC---CChhhHHHHHHHHH
Q 039873          339 TFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGN-IEAANKVFSDMRY---RDIITWNAMICGYS  414 (709)
Q Consensus       339 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~~~~---~~~~~~~~li~~~~  414 (709)
                      .|..+...+...|++++|...+..+++.. +.+..+++.+...|.+.|+ +++|+..|+++..   .+...|+.+...|.
T Consensus        99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~  177 (382)
T 2h6f_A           99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  177 (382)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            45566667788899999999999999876 5678889999999999997 9999999998873   47789999999999


Q ss_pred             HcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHh-cCCHHH
Q 039873          415 HHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK-AGLLDE  492 (709)
Q Consensus       415 ~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~  492 (709)
                      ..|++++|+..|+++++  +.| +...|..+..++...|++++|+..++.+++.  -+-+...|+.+..+|.+ .|..++
T Consensus       178 ~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          178 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence            99999999999999999  456 5668999999999999999999999999774  22356789999999999 677677


Q ss_pred             HH-----HHHHh-CCCCCC-HHHHHHHHHHHHhcC--CchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC---------
Q 039873          493 AE-----KFMRS-TPVKWD-VVAWHTLLNASRVHQ--NYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK---------  554 (709)
Q Consensus       493 A~-----~~~~~-~~~~pd-~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------  554 (709)
                      |.     +.+++ +.+.|+ ...|..+...+...|  ++++|.+.++++ +.+|+++..+..|+++|.+.|         
T Consensus       254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~  332 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED  332 (382)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence            73     55553 334555 889999999898888  689999999998 889999999999999999875         


Q ss_pred             CchhHHHHHHHH-Hh
Q 039873          555 RWDGVSKIRKLM-KV  568 (709)
Q Consensus       555 ~~~~a~~~~~~m-~~  568 (709)
                      .+++|.++++++ .+
T Consensus       333 ~~~~A~~~~~~l~~~  347 (382)
T 2h6f_A          333 ILNKALELCEILAKE  347 (382)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            358999999998 54

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.30  E-value=1.4e-08  Score=112.36  Aligned_cols=424  Identities=8%  Similarity=0.004  Sum_probs=261.2

Q ss_pred             CCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHhcCCC---chHHHHHHHHHHHhCC-CCchhH
Q 039873           97 RNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCSRSGR---GAEGRQCHGYVFKSGL-VFCKYV  172 (709)
Q Consensus        97 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~~~~~~  172 (709)
                      .|..+|..++..+.+.+.++.+..+|+.+..  -.+.....|..-+..-.+.++   .+.+..+|+..+.... .|++..
T Consensus        64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~--~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L  141 (679)
T 4e6h_A           64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHD--RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL  141 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence            3677788888888888888888888888862  234455566666666666677   8888888888777642 366667


Q ss_pred             HHHHHHHHHhcCCh--------HHHHHHHhhCC------CC-CcccHHHHHHHHHh---------CCCccHHHHHHHHHH
Q 039873          173 RNALVELYTKCLDV--------EMAKRLLDLLP------GY-DVFEYNSVLNGLIE---------NECFRGGVEVLGKMV  228 (709)
Q Consensus       173 ~~~li~~y~~~g~~--------~~A~~~f~~~~------~~-~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~  228 (709)
                      |...+....+.++.        +...++|+...      .+ +...|...+.-...         +++.+.+..+|++.+
T Consensus       142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL  221 (679)
T 4e6h_A          142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL  221 (679)
T ss_dssp             HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence            77766655554443        22335665421      12 23456666654332         234556667777766


Q ss_pred             hCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhc-------c---
Q 039873          229 SGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGL-------E---  298 (709)
Q Consensus       229 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m-------~---  298 (709)
                      ......-..+|..........+ ...+.+++.+.                     ..+++.|...+.++       .   
T Consensus       222 ~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~  279 (679)
T 4e6h_A          222 CQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNL  279 (679)
T ss_dssp             TSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             hCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhcc
Confidence            4211111112211111100000 11121211110                     01122233333221       0   


Q ss_pred             -C----------C--------CHhhHHHHHHHHHHcC-------CHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCC
Q 039873          299 -T----------R--------NVVLWTAMVAACFQNE-------YFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSA  352 (709)
Q Consensus       299 -~----------~--------~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~  352 (709)
                       .          |        ....|...|.---.++       ..+.+..+|++.+.. ..-+...|.....-+...|+
T Consensus       280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~  358 (679)
T 4e6h_A          280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNT  358 (679)
T ss_dssp             CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSC
T ss_pred             ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCc
Confidence             0          0        0234555554333332       123455677777653 22244556566666667788


Q ss_pred             hhHHH-HHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-------------C------------ChhhH
Q 039873          353 LRHGD-LLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-------------R------------DIITW  406 (709)
Q Consensus       353 ~~~a~-~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-------------~------------~~~~~  406 (709)
                      .+.|. .+++..+.. ++.+..++-.++..+-+.|+++.|.++|+++..             |            ....|
T Consensus       359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW  437 (679)
T 4e6h_A          359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY  437 (679)
T ss_dssp             CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence            88896 999999875 356677788889999999999999999998763             2            12368


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873          407 NAMICGYSHHGLGREALTLFQNMLAA-E-ERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL  484 (709)
Q Consensus       407 ~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  484 (709)
                      ...+....+.|..+.|..+|.+..+. + ..+......+.+.- ...++++.|..+|+..++.++  -+...+...++..
T Consensus       438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe  514 (679)
T 4e6h_A          438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HISKDTKTACKVLELGLKYFA--TDGEYINKYLDFL  514 (679)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHH
Confidence            88888888899999999999999885 2 12222222222322 223568999999999988644  3455778889999


Q ss_pred             HhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh
Q 039873          485 SKAGLLDEAEKFMRST-PVKW----DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY  550 (709)
Q Consensus       485 ~~~g~~~~A~~~~~~~-~~~p----d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  550 (709)
                      ...|+.+.|+.+|+.. ...|    ....|...+.--..+|+.+.+..+.+++.+..|++. ....+++=|
T Consensus       515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry  584 (679)
T 4e6h_A          515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY  584 (679)
T ss_dssp             HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence            9999999999999854 2223    257899999999999999999999999999999864 344444444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.28  E-value=9.6e-09  Score=113.65  Aligned_cols=412  Identities=10%  Similarity=0.001  Sum_probs=224.3

Q ss_pred             chhHHHHHHHHHHccCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCC---hhHHHHHHHHhhhCCC-CCCChhhHH
Q 039873           67 NVVLTNSLVNLYAKCNQISIARQLFDNMRQ--R-NVVSYSSLMTWYLHNGF---LLETLKLFKNMVSGDN-LEPNEYIFS  139 (709)
Q Consensus        67 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~g-~~p~~~t~~  139 (709)
                      |...|..++..+.+.+.++.++.+|+++..  | ....|...+..-.+.++   .+.+..+|++.. ... ..|+...|.
T Consensus        65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal-~~~~~~~sv~LW~  143 (679)
T 4e6h_A           65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL-SKELGNNDLSLWL  143 (679)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT-CSSSCCCCHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH-HhcCCCCCHHHHH
Confidence            566666666666666666666666666543  2 23345555555555555   666666666665 221 135555555


Q ss_pred             HHHHHHhcCCCc--------hHHHHHHHHHHH-hCC-CCc-hhHHHHHHHHHHh---------cCChHHHHHHHhhCCC-
Q 039873          140 IVLSSCSRSGRG--------AEGRQCHGYVFK-SGL-VFC-KYVRNALVELYTK---------CLDVEMAKRLLDLLPG-  198 (709)
Q Consensus       140 ~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~y~~---------~g~~~~A~~~f~~~~~-  198 (709)
                      .-+.-..+.++.        +..+++|+.++. .|. .++ ..+|...+.....         .++++.++++|++... 
T Consensus       144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i  223 (679)
T 4e6h_A          144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ  223 (679)
T ss_dssp             HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence            555444333332        223355555443 244 332 3455555544321         2345566666665443 


Q ss_pred             C--Cc-ccHH---HHHHHH--------H--hCCCccHHHHHHHHHHh--CCCC---------------C-----C---hh
Q 039873          199 Y--DV-FEYN---SVLNGL--------I--ENECFRGGVEVLGKMVS--GSVR---------------W-----D---SV  237 (709)
Q Consensus       199 ~--~~-~~~~---~li~~~--------~--~~g~~~~A~~l~~~m~~--~g~~---------------p-----~---~~  237 (709)
                      |  +. ..|.   .+...+        .  ....++.|...+.++..  .++.               |     +   ..
T Consensus       224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~  303 (679)
T 4e6h_A          224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL  303 (679)
T ss_dssp             CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence            1  10 1121   111110        0  00122333344443221  1110               1     0   01


Q ss_pred             hHHHHHHHHhcCC-------CcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHH-HHHHhccC---CCHhhHH
Q 039873          238 TYVNAFGLSASLK-------DLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAK-KVFEGLET---RNVVLWT  306 (709)
Q Consensus       238 t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~m~~---~~~~~~~  306 (709)
                      .|...+.---..+       ..+....+|++++..- +-+..+|-..+..+.+.|+.++|. .+|++...   .+...|-
T Consensus       304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl  382 (679)
T 4e6h_A          304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAF  382 (679)
T ss_dssp             HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            2333333322221       1233456677777653 456677777777777778877775 77776543   3555677


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHhCC---------CCCC------------ccchHHHHHHHhccCChhHHHHHHHHHHH
Q 039873          307 AMVAACFQNEYFEEALNLFCGMEYEA---------IRPN------------EFTFAVMLNSAAGLSALRHGDLLHAHIEK  365 (709)
Q Consensus       307 ~li~~~~~~g~~~~A~~~~~~m~~~g---------~~pd------------~~t~~~ll~~~~~~~~~~~a~~i~~~~~~  365 (709)
                      ..+...-+.|++++|.++|+++....         -.|+            ...|...+....+.|.++.|+.++..+.+
T Consensus       383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~  462 (679)
T 4e6h_A          383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR  462 (679)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77777777888888888888776531         0132            12466666666667778888888888877


Q ss_pred             h-CCCCChhHHhHHHhHHHhcC-CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CH
Q 039873          366 S-GFKEHLIVGNALINMYAKGG-NIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP--NH  438 (709)
Q Consensus       366 ~-g~~~~~~~~~~li~~y~~~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~  438 (709)
                      . + .....+|...+.+-.++| +.+.|.++|+...+   .+...|...+......|+.+.|..+|++.......+  ..
T Consensus       463 ~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~  541 (679)
T 4e6h_A          463 LKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK  541 (679)
T ss_dssp             TGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred             hcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence            5 2 122333433333444444 47888888887653   355667777777777888888888888877643222  12


Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873          439 VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL  484 (709)
Q Consensus       439 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  484 (709)
                      ..|...+.--...|+.+.+..+.+.+.+..   |+......+++-|
T Consensus       542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~---P~~~~~~~f~~ry  584 (679)
T 4e6h_A          542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKF---PEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHHHHHHHHTCCSHHHHHHHHHHHHHS---TTCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCcHHHHHHHHh
Confidence            356666666667788888888888876653   3333444444444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.27  E-value=1.6e-10  Score=121.45  Aligned_cols=153  Identities=13%  Similarity=0.011  Sum_probs=92.3

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hH
Q 039873          405 TWNAMICGYSHHGLGREALTLFQNMLAAEE-RPN----HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LE  475 (709)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~  475 (709)
                      +|..+...|...|++++|++.|++..+... .++    ..++..+...+...|++++|...++...+...-.++    ..
T Consensus       189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  268 (406)
T 3sf4_A          189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ  268 (406)
T ss_dssp             HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence            455555555555666666665555543100 111    124555556666666666666666665442211111    34


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC------CCCch
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMRSTP----VKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMD------PNDVG  541 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~  541 (709)
                      .+..+...|.+.|++++|.+.+++.-    ..++    ..++..+...+...|++++|...+++++++.      +....
T Consensus       269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  348 (406)
T 3sf4_A          269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT  348 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence            56677777777777777777665320    0112    5567777788888899999999998887753      22345


Q ss_pred             hHHHHHHHhhhcCCch
Q 039873          542 TYILLSNMYAKEKRWD  557 (709)
Q Consensus       542 ~~~~l~~~~~~~g~~~  557 (709)
                      ++..++.+|...|+..
T Consensus       349 ~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          349 ARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhhHhH
Confidence            6778888888888764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.27  E-value=1.1e-10  Score=119.05  Aligned_cols=133  Identities=14%  Similarity=0.028  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hH
Q 039873          405 TWNAMICGYSHHGLGREALTLFQNMLAAEE-RPN----HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LE  475 (709)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~  475 (709)
                      ++..+...|...|++++|++.+++..+... .++    ..++..+...+...|++++|...++.......-.++    ..
T Consensus       185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  264 (338)
T 3ro2_A          185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ  264 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence            444445555555555555555555443100 011    124455555556666666666666555432211111    34


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMRSTP-V---KWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDP  537 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~~~~-~---~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  537 (709)
                      .+..+...|...|++++|.+.+++.- .   .++    ..++..+...+...|++++|...+++++++.+
T Consensus       265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            55666667777777777776655320 0   011    44666777778888888888888888887654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.27  E-value=8.4e-11  Score=124.15  Aligned_cols=133  Identities=12%  Similarity=-0.004  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hH
Q 039873          405 TWNAMICGYSHHGLGREALTLFQNMLAAEE-RPN----HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LE  475 (709)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~  475 (709)
                      +|..+...|...|++++|++.|++..+... .++    ..++..+...+...|++++|...++.......-..+    ..
T Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  304 (411)
T 4a1s_A          225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ  304 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            455555556666666666666655544210 011    124555666666667777777666665443211111    34


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMRSTP-V---KWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDP  537 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~~~~-~---~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  537 (709)
                      .+..+...|.+.|++++|.+.+++.- +   .++    ..++..+...+...|++++|...+++++++.+
T Consensus       305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence            56677777777788877777765431 0   011    44667777888899999999999999988764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.22  E-value=2.9e-10  Score=105.12  Aligned_cols=168  Identities=13%  Similarity=0.053  Sum_probs=141.3

Q ss_pred             CChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039873          370 EHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLS  446 (709)
Q Consensus       370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~  446 (709)
                      .+..+|..|...|.+.|++++|.+.|++..   ..+..+|..+...|.+.|++++|++.+++..... +-+...+..+..
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            456788999999999999999999999876   3467789999999999999999999999998842 334556777777


Q ss_pred             HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchH
Q 039873          447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGF  524 (709)
Q Consensus       447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~  524 (709)
                      .+...++++.+...+....+.  .+.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+...+...|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            888999999999999998763  2334678889999999999999999998754 3344 48889999999999999999


Q ss_pred             HHHHHHHHHhcCCCCc
Q 039873          525 GRRIAEYILHMDPNDV  540 (709)
Q Consensus       525 a~~~~~~~~~~~p~~~  540 (709)
                      |++.++++++++|+++
T Consensus       160 A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          160 AVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHhCCccCH
Confidence            9999999999998763

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.22  E-value=1.8e-10  Score=128.92  Aligned_cols=161  Identities=15%  Similarity=0.131  Sum_probs=125.9

Q ss_pred             hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHH
Q 039873          403 IITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCI  480 (709)
Q Consensus       403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l  480 (709)
                      ..+|+.|...|.+.|++++|++.|++..+  +.|+ ..++..+..++.+.|++++|.+.|++.++.   .|+ ...|..+
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL   83 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM   83 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence            45677777777788888888888887777  4564 457777777788888888888888777653   343 5677788


Q ss_pred             HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchh
Q 039873          481 VGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDG  558 (709)
Q Consensus       481 i~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  558 (709)
                      ..+|.+.|++++|++.|++. .+.|+ ...|..+...+...|++++|++.++++++++|+++..+..|+.+|...|+|++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            88888888888888877643 34454 77888888888999999999999999999999988899999999999999999


Q ss_pred             HHHHHHHHHh
Q 039873          559 VSKIRKLMKV  568 (709)
Q Consensus       559 a~~~~~~m~~  568 (709)
                      |.+.+++..+
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9888877653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.21  E-value=5.1e-10  Score=117.01  Aligned_cols=158  Identities=13%  Similarity=0.029  Sum_probs=75.0

Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhCCC-CCC----ccchHHHHHHHhccCChhHHHHHHHHHHHhC--C----CCChhHHh
Q 039873          308 MVAACFQNEYFEEALNLFCGMEYEAI-RPN----EFTFAVMLNSAAGLSALRHGDLLHAHIEKSG--F----KEHLIVGN  376 (709)
Q Consensus       308 li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g--~----~~~~~~~~  376 (709)
                      ....+...|++++|+..|++..+.-. .+|    ..++..+...+...|+++.|...+..+.+..  .    .....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            33445566777777777766654210 111    1234444444455555555555554444321  0    00123444


Q ss_pred             HHHhHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 039873          377 ALINMYAKGGNIEAANKVFSDMRY-----RD----IITWNAMICGYSHHGLGREALTLFQNMLAA----EERPN-HVTFV  442 (709)
Q Consensus       377 ~li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~t~~  442 (709)
                      .+...|...|++++|...|++..+     ++    ..+|+.+...|...|++++|++.|++..+.    +..|+ ..++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            555555555555555555554431     11    124555555555555555555555555441    11122 23444


Q ss_pred             HHHHHHhccccHHHHHHHHHHHH
Q 039873          443 GVLSACGHLGLVQEGFYYLNHLM  465 (709)
Q Consensus       443 ~ll~a~~~~g~~~~a~~~~~~~~  465 (709)
                      .+...+...|++++|...++...
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al  291 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGM  291 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH
Confidence            55555555555555555555543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.20  E-value=5e-11  Score=120.32  Aligned_cols=236  Identities=13%  Similarity=0.097  Sum_probs=122.3

Q ss_pred             HhhHHHHHHHHHHcCCHhHHHHHHHHHHhC-------CCCCCccchHHHHHHHhccCChhHHHHHHHHHHHh------CC
Q 039873          302 VVLWTAMVAACFQNEYFEEALNLFCGMEYE-------AIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKS------GF  368 (709)
Q Consensus       302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~------g~  368 (709)
                      ..+|..+...|...|++++|+.+|+++.+.       ........+..+...+...|+++.|...+..+++.      +-
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            467888888899999999999999888752       11112233444444555555555555555554432      10


Q ss_pred             -CCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHH
Q 039873          369 -KEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAA------EERPN-HVT  440 (709)
Q Consensus       369 -~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t  440 (709)
                       +....                               +|..+...|...|++++|++.|++..+.      +-.|+ ...
T Consensus       107 ~~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  155 (311)
T 3nf1_A          107 HPAVAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ  155 (311)
T ss_dssp             CHHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ChHHHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence             11223                               4444455555555555555555554432      11122 224


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHhh-----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCC
Q 039873          441 FVGVLSACGHLGLVQEGFYYLNHLMKQI-----GIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRSTP----------VKW  504 (709)
Q Consensus       441 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~p  504 (709)
                      +..+...+...|++++|..+++.+.+..     +..| ....+..+...|.+.|++++|.+.+++.-          ..+
T Consensus       156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  235 (311)
T 3nf1_A          156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD  235 (311)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            4445555555566666665555554421     1111 12345555566666666666665554321          011


Q ss_pred             C-------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          505 D-------VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       505 d-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      .       ...+..+...+...+.+.++...++......|....++..++.+|.+.|++++|.+.+++..+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            1       112222223344556667777777777777777778888888889889999999888887764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.19  E-value=4.4e-09  Score=106.15  Aligned_cols=184  Identities=9%  Similarity=0.015  Sum_probs=123.2

Q ss_pred             hHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-Chh-hHHHHHHHHHHcCChHHHHHHHHHH
Q 039873          354 RHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-DII-TWNAMICGYSHHGLGREALTLFQNM  429 (709)
Q Consensus       354 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m  429 (709)
                      ++|..+++.+++.-.+.+...+..++..+.+.|++++|..+|++..+  | +.. .|..++..+.+.|++++|..+|++.
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  160 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            66666666666531134455677777777777777777777777653  3 233 6777777777888888888888887


Q ss_pred             HHCCCCCCHHHHHHHHHHH-hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC
Q 039873          430 LAAEERPNHVTFVGVLSAC-GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST----PVKW  504 (709)
Q Consensus       430 ~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p  504 (709)
                      .+.. +++...|....... ...|++++|..+|+..++..+  -+...|..+++.+.+.|++++|+.+|++.    .+.|
T Consensus       161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p  237 (308)
T 2ond_A          161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence            7743 22333443333222 235788888888887766432  24567777788888888888888887643    1233


Q ss_pred             --CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873          505 --DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV  540 (709)
Q Consensus       505 --d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  540 (709)
                        ....|..++.....+|+.+.|..+++++++..|++.
T Consensus       238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~  275 (308)
T 2ond_A          238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence              366777777777778888888888888888877654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.17  E-value=9.8e-11  Score=118.13  Aligned_cols=239  Identities=11%  Similarity=0.056  Sum_probs=143.2

Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHhccC--------C---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhC------
Q 039873          269 PDVFINSAMISMYGKCGKFSNAKKVFEGLET--------R---NVVLWTAMVAACFQNEYFEEALNLFCGMEYE------  331 (709)
Q Consensus       269 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------  331 (709)
                      .+..++..+...|...|++++|..+|+++.+        .   ...+|..+...|...|++++|+..|++....      
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            3467888999999999999999999998764        2   2467888999999999999999999998753      


Q ss_pred             CCCC-CccchHHHHHHHhccCChhHHHHHHHHHHHh------CC-CCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCCh
Q 039873          332 AIRP-NEFTFAVMLNSAAGLSALRHGDLLHAHIEKS------GF-KEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDI  403 (709)
Q Consensus       332 g~~p-d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~  403 (709)
                      +-.| ...++..+...+...|++++|...+..+.+.      +- +....++..+...|.+.                  
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------  166 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ------------------  166 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT------------------
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc------------------
Confidence            2122 2345666777778888888888888777653      11 11223344444444444                  


Q ss_pred             hhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhh------CC
Q 039873          404 ITWNAMICGYSHHGLGREALTLFQNMLAA------EERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQI------GI  470 (709)
Q Consensus       404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~  470 (709)
                                   |++++|+++|+++...      +-.|+ ..++..+...+...|++++|..+++.+.+..      ..
T Consensus       167 -------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  233 (311)
T 3nf1_A          167 -------------GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV  233 (311)
T ss_dssp             -------------TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             -------------CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence                         4455555444444432      11222 2244445555555555555555555554311      01


Q ss_pred             CCC-------hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 039873          471 VPG-------LEHYTCIVGLLSKAGLLDEAEKFMRSTP-VKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN  538 (709)
Q Consensus       471 ~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  538 (709)
                      .+.       ...+..+...+...+.+.+|...++... ..|+ ..+|..+...+...|++++|...+++++++.|+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            111       1122233344445556666666665543 2233 677888889999999999999999999988764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.15  E-value=6.1e-09  Score=105.12  Aligned_cols=163  Identities=13%  Similarity=0.061  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCcc--chHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhH
Q 039873          304 LWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEF--TFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINM  381 (709)
Q Consensus       304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~  381 (709)
                      .|..++..+.+.|++++|.++|++..+  +.|+..  .|..+...+.+.|+++.|..++..+++.+ +.+..++......
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~  177 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM  177 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            444444444444444444444444443  123221  33444444444444444444444444432 1222233222222


Q ss_pred             HH-hcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccccH
Q 039873          382 YA-KGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAE-ERPN--HVTFVGVLSACGHLGLV  454 (709)
Q Consensus       382 y~-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd--~~t~~~ll~a~~~~g~~  454 (709)
                      .. ..|+.++|..+|++..+   .+...|..++..+.+.|++++|..+|++..... +.|+  ...|..++......|+.
T Consensus       178 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~  257 (308)
T 2ond_A          178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  257 (308)
T ss_dssp             HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            21 24677777777766542   355677777777777777777777777777752 3553  44566666666777777


Q ss_pred             HHHHHHHHHHHHhhC
Q 039873          455 QEGFYYLNHLMKQIG  469 (709)
Q Consensus       455 ~~a~~~~~~~~~~~~  469 (709)
                      ++|..+++.+.+..+
T Consensus       258 ~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          258 ASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcc
Confidence            788777777766433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.14  E-value=7.3e-10  Score=115.83  Aligned_cols=225  Identities=9%  Similarity=-0.024  Sum_probs=170.3

Q ss_pred             HHHHHhccCChhHHHHHHHHHHHh----CCCC-ChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CC-----hhhHH
Q 039873          343 MLNSAAGLSALRHGDLLHAHIEKS----GFKE-HLIVGNALINMYAKGGNIEAANKVFSDMRY-----RD-----IITWN  407 (709)
Q Consensus       343 ll~~~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~-----~~~~~  407 (709)
                      ....+...|+++.|...+..+.+.    +-.+ ...++..+...|...|++++|...|.+..+     ++     ..+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            344567889999999999999864    2111 346788899999999999999998887652     21     35788


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHhh---CC-CCChHHHH
Q 039873          408 AMICGYSHHGLGREALTLFQNMLAAEE-RPN----HVTFVGVLSACGHLGLVQEGFYYLNHLMKQI---GI-VPGLEHYT  478 (709)
Q Consensus       408 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~  478 (709)
                      .+...|...|++++|++.|++.....- .++    ..++..+...+...|++++|...++...+..   +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            899999999999999999999875311 122    2378888889999999999999999886621   33 22356788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---chHHHHHHHHHHhcCCCCchhHHHHHH
Q 039873          479 CIVGLLSKAGLLDEAEKFMRST-PV-----KWD-VVAWHTLLNASRVHQN---YGFGRRIAEYILHMDPNDVGTYILLSN  548 (709)
Q Consensus       479 ~li~~~~~~g~~~~A~~~~~~~-~~-----~pd-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~  548 (709)
                      .+...|.+.|++++|.+.+++. .+     .|. ...+..+...+...|+   +++|...+++. ...|.....+..++.
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~  347 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK  347 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence            9999999999999999997643 11     122 2334566667778888   67777777665 223444567889999


Q ss_pred             HhhhcCCchhHHHHHHHHHh
Q 039873          549 MYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       549 ~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +|...|++++|.+.+++..+
T Consensus       348 ~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          348 YYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999875

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.14  E-value=1.6e-09  Score=99.73  Aligned_cols=158  Identities=14%  Similarity=0.013  Sum_probs=93.2

Q ss_pred             HHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 039873          374 VGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGH  450 (709)
Q Consensus       374 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~  450 (709)
                      .+..+...|...|++++|...|+++.+   .+...|..+...|...|++++|.+.++++.+.  .|              
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~--------------   73 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--AP--------------   73 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT--------------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC--------------
Confidence            344445555555555555555555442   23344445555555555555555555554442  12              


Q ss_pred             cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCchHHHHH
Q 039873          451 LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PV-KWDVVAWHTLLNASRVHQNYGFGRRI  528 (709)
Q Consensus       451 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~pd~~~~~~ll~~~~~~g~~~~a~~~  528 (709)
                                           .+...+..+...|...|++++|.+.+++. .. ..+...|..+...+...|++++|...
T Consensus        74 ---------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~  132 (186)
T 3as5_A           74 ---------------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS  132 (186)
T ss_dssp             ---------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ---------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence                                 22334444455555555555555554432 11 22456666677777777777778777


Q ss_pred             HHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          529 AEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       529 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ++++++..|.++..+..++.+|...|++++|.+.++...+
T Consensus       133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE  172 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8777777777777778888888888888888888777764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.11  E-value=4.7e-09  Score=100.69  Aligned_cols=203  Identities=8%  Similarity=-0.010  Sum_probs=131.6

Q ss_pred             CccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHH
Q 039873          336 NEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICG  412 (709)
Q Consensus       336 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~  412 (709)
                      |...+......+...|++++|...+..+++..-+++...+..+...|.+.|++++|...|++..+   .+...|..+...
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            34556666666777788888888888777766435666666677777778888888877776652   345577777777


Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC---hHHHHHHH
Q 039873          413 YSHHGLGREALTLFQNMLAAEERPN-H-------VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG---LEHYTCIV  481 (709)
Q Consensus       413 ~~~~g~~~~A~~~~~~m~~~g~~pd-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li  481 (709)
                      |...|++++|++.|++..+.  .|+ .       ..|..+...+...|++++|...|+.++   .+.|+   ...+..+.
T Consensus        86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~  160 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence            77888888888888777763  443 3       335556666677777777777777764   34554   45566666


Q ss_pred             HHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh
Q 039873          482 GLLSKAGLL--DEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY  550 (709)
Q Consensus       482 ~~~~~~g~~--~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  550 (709)
                      ..|...|+.  ++|..+.     ..+...+..+.  ....+.+++|+..++++++++|++..+...+..+.
T Consensus       161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            666655543  2222221     12233333322  23345678899999999999998877766665543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.09  E-value=4.2e-08  Score=101.82  Aligned_cols=194  Identities=12%  Similarity=0.030  Sum_probs=132.4

Q ss_pred             HhHHHhHHHhcCCHHHHHHHHhhcCC----------C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHH
Q 039873          375 GNALINMYAKGGNIEAANKVFSDMRY----------R-DIITWNAMICGYSHHGLGREALTLFQNMLAAEER--P--NHV  439 (709)
Q Consensus       375 ~~~li~~y~~~g~~~~A~~~f~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--d~~  439 (709)
                      ...+...|...|++++|...+++...          + ....+..+...|...|++++|...+++.....-.  +  ...
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            44566667777777777777766541          1 1235566777788888888888888887763211  1  124


Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHH
Q 039873          440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYT-----CIVGLLSKAGLLDEAEKFMRSTP-VKWD-----VVA  508 (709)
Q Consensus       440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~pd-----~~~  508 (709)
                      ++..+...+...|++++|...++.......-......+.     .++..+...|++++|...+++.. ..|.     ...
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            566677778888999999988888765322211111221     23455778999999999988652 1121     335


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcCCC-----C-chhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          509 WHTLLNASRVHQNYGFGRRIAEYILHMDPN-----D-VGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       509 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +..+...+...|++++|...++++.+..+.     + ...+..++.+|...|++++|...+++..+
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            667777888899999999999988765321     1 23677788899999999999999988765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.07  E-value=5.9e-09  Score=95.77  Aligned_cols=167  Identities=11%  Similarity=-0.000  Sum_probs=124.1

Q ss_pred             cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHH
Q 039873          338 FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYS  414 (709)
Q Consensus       338 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~  414 (709)
                      ..+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+++.   ..+...|..+...|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            345566777889999999999999887654 4567888999999999999999999999876   346778888899999


Q ss_pred             HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039873          415 HHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE  494 (709)
Q Consensus       415 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  494 (709)
                      ..|++++|.+.|+++.... +.+...+..+...+...|++++|..+++.+.+..   |                      
T Consensus        88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~----------------------  141 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR---P----------------------  141 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T----------------------
T ss_pred             HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---c----------------------
Confidence            9999999999999988752 3345566666667777777777777777665421   1                      


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873          495 KFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV  540 (709)
Q Consensus       495 ~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  540 (709)
                               .+..+|..+...+...|++++|...++++++..|++.
T Consensus       142 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          142 ---------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             ---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence                     1345555566666666666667666666666666544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.07  E-value=3.4e-08  Score=102.81  Aligned_cols=56  Identities=9%  Similarity=-0.043  Sum_probs=28.1

Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhCCC-CCCc----cchHHHHHHHhccCChhHHHHHHHHHH
Q 039873          309 VAACFQNEYFEEALNLFCGMEYEAI-RPNE----FTFAVMLNSAAGLSALRHGDLLHAHIE  364 (709)
Q Consensus       309 i~~~~~~g~~~~A~~~~~~m~~~g~-~pd~----~t~~~ll~~~~~~~~~~~a~~i~~~~~  364 (709)
                      ...+...|++++|+..|++..+.-. .+|.    .++..+...+...|+++.|...+..+.
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al  168 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL  168 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            3345567777777777777654311 1221    233334444445555555555444443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.06  E-value=4.4e-09  Score=109.59  Aligned_cols=300  Identities=9%  Similarity=-0.010  Sum_probs=199.2

Q ss_pred             CCchHHHHHHHHHH--HhcCChHHHHHHHHhccC--------CCHhhHHHHHHH--HHHcCCHhHHH---------HHHH
Q 039873          268 EPDVFINSAMISMY--GKCGKFSNAKKVFEGLET--------RNVVLWTAMVAA--CFQNEYFEEAL---------NLFC  326 (709)
Q Consensus       268 ~~~~~~~~~li~~y--~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~--~~~~g~~~~A~---------~~~~  326 (709)
                      .|+..+.+.|-+.|  .+.+++++|..+++++.+        .++..|-.++..  ....+....+.         +.++
T Consensus         7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A            7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence            45566666666666  677778888777776432        123333333321  11112222222         5555


Q ss_pred             HHHhCCCCCCc-c---chHHHHHHHhccCChhHHHHHHHHHHHhC--CC---CChhHHhHHHhHHHhcCCHHHHHHHHhh
Q 039873          327 GMEYEAIRPNE-F---TFAVMLNSAAGLSALRHGDLLHAHIEKSG--FK---EHLIVGNALINMYAKGGNIEAANKVFSD  397 (709)
Q Consensus       327 ~m~~~g~~pd~-~---t~~~ll~~~~~~~~~~~a~~i~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~  397 (709)
                      .+.......+. .   .+......+...|+++.|...+..+.+..  ..   ....++..+...|...|+++.|...+++
T Consensus        87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~  166 (378)
T 3q15_A           87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ  166 (378)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            55432111111 1   11223334578899999999999988642  11   1245778899999999999999988877


Q ss_pred             cCC-----CC-----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccccHHHHHHHHH
Q 039873          398 MRY-----RD-----IITWNAMICGYSHHGLGREALTLFQNMLAA----EERP-NHVTFVGVLSACGHLGLVQEGFYYLN  462 (709)
Q Consensus       398 ~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~  462 (709)
                      ..+     ++     ..+++.+...|...|++++|++.|++..+.    |-.+ ...++..+...+...|++++|...++
T Consensus       167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~  246 (378)
T 3q15_A          167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ  246 (378)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            541     12     347888999999999999999999998762    1111 13467778888999999999999999


Q ss_pred             HHHHhh---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---chHHHHHH
Q 039873          463 HLMKQI---GIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST----PV--KWD-VVAWHTLLNASRVHQN---YGFGRRIA  529 (709)
Q Consensus       463 ~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~pd-~~~~~~ll~~~~~~g~---~~~a~~~~  529 (709)
                      ......   +.+.....+..+...|.+.|++++|.+.+++.    ..  .|. ...+..+...+...++   +++|...+
T Consensus       247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~  326 (378)
T 3q15_A          247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF  326 (378)
T ss_dssp             HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            887621   22333667888999999999999999998743    11  233 3445555556667777   67777766


Q ss_pred             HHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          530 EYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       530 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ++. ...|.....+..++..|...|++++|.+.+++..+
T Consensus       327 ~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          327 EKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            662 12233445778999999999999999999998864

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.05  E-value=4.5e-09  Score=112.93  Aligned_cols=200  Identities=10%  Similarity=-0.017  Sum_probs=123.4

Q ss_pred             CchHHHHHHHHHHHhcCCh-HHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHH
Q 039873          269 PDVFINSAMISMYGKCGKF-SNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVML  344 (709)
Q Consensus       269 ~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll  344 (709)
                      .+...+..+...|...|++ ++|++.|++..+   .+...|..+...|.+.|++++|++.|++..+.  .|+...+..+.
T Consensus       100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg  177 (474)
T 4abn_A          100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS  177 (474)
T ss_dssp             CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence            3455566666666666666 666666665432   24566677777777777777777777776654  24434444444


Q ss_pred             HHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHc-----
Q 039873          345 NSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHH-----  416 (709)
Q Consensus       345 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-----  416 (709)
                      ..+...+.                          .....+.|++++|...|++..   ..+...|..+...|...     
T Consensus       178 ~~~~~~~~--------------------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~  231 (474)
T 4abn_A          178 MVLRQLQT--------------------------DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTG  231 (474)
T ss_dssp             HHHTTCCC--------------------------SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcc--------------------------CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Confidence            44444400                          000001144455555554433   22445566666666666     


Q ss_pred             ---CChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC
Q 039873          417 ---GLGREALTLFQNMLAAEERP----NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGL  489 (709)
Q Consensus       417 ---g~~~~A~~~~~~m~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  489 (709)
                         |++++|++.|++..+.  .|    +...+..+..++...|++++|.+.|+...+..  +.+...+..+..++...|+
T Consensus       232 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~  307 (474)
T 4abn_A          232 QNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSR  307 (474)
T ss_dssp             CCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHH
Confidence               7788888888887773  45    56677778888888888888888888876532  2234567788888888888


Q ss_pred             HHHHHHHHHhC
Q 039873          490 LDEAEKFMRST  500 (709)
Q Consensus       490 ~~~A~~~~~~~  500 (709)
                      +++|.+.+.++
T Consensus       308 ~~eAi~~~~~~  318 (474)
T 4abn_A          308 LTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHTTTC
T ss_pred             HHHHHHHhccc
Confidence            88888877766

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.02  E-value=6.9e-09  Score=99.48  Aligned_cols=191  Identities=14%  Similarity=-0.002  Sum_probs=119.4

Q ss_pred             CChhHHhHHHhHHHhcCCHHHHHHHHhhcC---C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 039873          370 EHLIVGNALINMYAKGGNIEAANKVFSDMR---Y-RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGV  444 (709)
Q Consensus       370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l  444 (709)
                      .|+..+..+...|.+.|++++|...|++..   . ++...|..+...|...|++++|++.|++..+  ..|+ ...+..+
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l   82 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGK   82 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHH
Confidence            345666667777777777777777777654   2 5566666677777777777777777777776  4454 3466666


Q ss_pred             HHHHhccccHHHHHHHHHHHHHhhCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 039873          445 LSACGHLGLVQEGFYYLNHLMKQIGIVPGL-----EHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD---VVAWHTLLNA  515 (709)
Q Consensus       445 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd---~~~~~~ll~~  515 (709)
                      ...+...|++++|...++...+..+-.+..     ..|..+...+.+.|++++|.+.|++. ...|+   ...|..+...
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence            677777777777777777776532222211     34666666777777777777776643 34454   3444555445


Q ss_pred             HHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          516 SRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       516 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      +..     .+...++++..+.+.+...|..+.  ....|.+++|...+++..+.
T Consensus       163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          163 FYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence            432     344555666666655544443332  33455669999999888763

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.98  E-value=1.4e-07  Score=97.88  Aligned_cols=221  Identities=9%  Similarity=-0.085  Sum_probs=101.2

Q ss_pred             HHHhCCCccHHHHHHHHHHhCCCCCChh----hHHHHHHHHhcCCCcHHHHHHHHHHHHcCC-CCc----hHHHHHHHHH
Q 039873          210 GLIENECFRGGVEVLGKMVSGSVRWDSV----TYVNAFGLSASLKDLKLGLQVHSQMLKSDI-EPD----VFINSAMISM  280 (709)
Q Consensus       210 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~  280 (709)
                      .+...|++++|...+++........+..    .+..+...+...|+++.|.+.+...++..- ..+    ..++..+...
T Consensus        23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  102 (373)
T 1hz4_A           23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI  102 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            3444555666666555554432111111    223333444445555555555555443210 001    1223445555


Q ss_pred             HHhcCChHHHHHHHHhccC----------C-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC--CC--ccchHHHHH
Q 039873          281 YGKCGKFSNAKKVFEGLET----------R-NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIR--PN--EFTFAVMLN  345 (709)
Q Consensus       281 y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd--~~t~~~ll~  345 (709)
                      |...|++++|...+++...          + ....+..+...+...|++++|...+++.......  +.  ..++..+..
T Consensus       103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  182 (373)
T 1hz4_A          103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ  182 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence            6666666666665554431          0 1123444555566666666666666665432111  10  112333344


Q ss_pred             HHhccCChhHHHHHHHHHHHhCCCCC-hhHHh-----HHHhHHHhcCCHHHHHHHHhhcCCCC-------hhhHHHHHHH
Q 039873          346 SAAGLSALRHGDLLHAHIEKSGFKEH-LIVGN-----ALINMYAKGGNIEAANKVFSDMRYRD-------IITWNAMICG  412 (709)
Q Consensus       346 ~~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~-----~li~~y~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~  412 (709)
                      .+...|++++|...+.......-.++ ...+.     ..+..+...|++++|...+++...++       ...+..+...
T Consensus       183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~  262 (373)
T 1hz4_A          183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA  262 (373)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence            44455555555555555443211111 00111     22233556666666666666554321       1134445555


Q ss_pred             HHHcCChHHHHHHHHHHH
Q 039873          413 YSHHGLGREALTLFQNML  430 (709)
Q Consensus       413 ~~~~g~~~~A~~~~~~m~  430 (709)
                      +...|++++|...+++..
T Consensus       263 ~~~~g~~~~A~~~l~~a~  280 (373)
T 1hz4_A          263 QILLGEFEPAEIVLEELN  280 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH
Confidence            566666666666665554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.95  E-value=8.4e-09  Score=102.02  Aligned_cols=221  Identities=15%  Similarity=0.149  Sum_probs=155.1

Q ss_pred             hccCChhHHHHHHHHHHHh-------CCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----------CChhhHHHH
Q 039873          348 AGLSALRHGDLLHAHIEKS-------GFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-----------RDIITWNAM  409 (709)
Q Consensus       348 ~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----------~~~~~~~~l  409 (709)
                      ...|+++.|...+...++.       ..+....++..+...|...|++++|...|++...           ....+|..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3567788888887777652       2233466788899999999999999999987652           134578889


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhh-----CCCC-ChHH
Q 039873          410 ICGYSHHGLGREALTLFQNMLAA------EERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQI-----GIVP-GLEH  476 (709)
Q Consensus       410 i~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~  476 (709)
                      ...|...|++++|++.|++....      .-.|+ ..++..+...+...|++++|..+++.+.+..     +..| ....
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999998764      11233 4577888889999999999999999987631     1122 2467


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCCchHH------HHHHHHHHhcCCCC
Q 039873          477 YTCIVGLLSKAGLLDEAEKFMRSTP----------VKWD-VVAWHTLLNASRVHQNYGFG------RRIAEYILHMDPND  539 (709)
Q Consensus       477 ~~~li~~~~~~g~~~~A~~~~~~~~----------~~pd-~~~~~~ll~~~~~~g~~~~a------~~~~~~~~~~~p~~  539 (709)
                      +..+...|.+.|++++|.+.+++.-          ..+. ...|..+.......+....+      ...++......|..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            8889999999999999999876431          1222 33344444444433333222      22222222233555


Q ss_pred             chhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          540 VGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       540 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ...+..++.+|...|++++|.+++++..+
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            67889999999999999999999998765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.94  E-value=5.7e-09  Score=116.84  Aligned_cols=163  Identities=15%  Similarity=0.151  Sum_probs=139.2

Q ss_pred             CChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 039873          370 EHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVL  445 (709)
Q Consensus       370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll  445 (709)
                      .+...++.|...|.+.|++++|.+.|++..+   .+..+|+.+...|.+.|++++|++.|++..+  +.|+ ...|..+.
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg   84 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            3467788899999999999999999998762   4577899999999999999999999999988  5675 56888999


Q ss_pred             HHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCc
Q 039873          446 SACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNY  522 (709)
Q Consensus       446 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~  522 (709)
                      .++...|++++|.+.|++.++.   .| +...|..+..+|.+.|++++|++.|++. .+.|+ ...|..|...+...|++
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence            9999999999999999998763   44 4678999999999999999999998753 44565 88899999999999999


Q ss_pred             hHHHHHHHHHHhcCC
Q 039873          523 GFGRRIAEYILHMDP  537 (709)
Q Consensus       523 ~~a~~~~~~~~~~~p  537 (709)
                      ++|.+.+++++++.|
T Consensus       162 ~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          162 TDYDERMKKLVSIVA  176 (723)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCh
Confidence            999999999887643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.90  E-value=3e-08  Score=99.10  Aligned_cols=164  Identities=9%  Similarity=-0.080  Sum_probs=94.4

Q ss_pred             HHhHHHhHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC------
Q 039873          374 VGNALINMYAKGGNIEAANKVFSDMRY-----RD----IITWNAMICGYSHH-GLGREALTLFQNMLAAEERPN------  437 (709)
Q Consensus       374 ~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~pd------  437 (709)
                      +++.+..+|.+.|++++|...|++...     .+    ..+|+.+...|... |++++|++.|++..+.  .|+      
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~  156 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL  156 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence            344455555555555555555554431     11    23566677777775 7888888777777652  221      


Q ss_pred             -HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH---
Q 039873          438 -HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGL-----EHYTCIVGLLSKAGLLDEAEKFMRST-PVKWDVV---  507 (709)
Q Consensus       438 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd~~---  507 (709)
                       ..++..+...+...|++++|...|+...+...-.+..     ..|..+..++...|++++|...+++. .+.|+..   
T Consensus       157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  236 (292)
T 1qqe_A          157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR  236 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence             2356667777777788888888777776532222221     14566677777778888887777653 3334311   


Q ss_pred             ---HHHHHHHHHH--hcCCchHHHHHHHHHHhcCCCC
Q 039873          508 ---AWHTLLNASR--VHQNYGFGRRIAEYILHMDPND  539 (709)
Q Consensus       508 ---~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~  539 (709)
                         .+..++.++.  ..++++.|+..++++.+++|..
T Consensus       237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~  273 (292)
T 1qqe_A          237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK  273 (292)
T ss_dssp             -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence               2333444553  2345667777776666666644

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.85  E-value=2.3e-08  Score=99.98  Aligned_cols=200  Identities=9%  Similarity=-0.059  Sum_probs=145.6

Q ss_pred             ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-------C--ChhhHHHHHHHHHHcCChHHH
Q 039873          352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-------R--DIITWNAMICGYSHHGLGREA  422 (709)
Q Consensus       352 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-------~--~~~~~~~li~~~~~~g~~~~A  422 (709)
                      ++++|...+..+               ...|...|++++|...|.+...       +  ...+|+.+...|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            477777777665               3467889999999998887642       1  146899999999999999999


Q ss_pred             HHHHHHHHHCCC---CCC--HHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHH
Q 039873          423 LTLFQNMLAAEE---RPN--HVTFVGVLSACGHL-GLVQEGFYYLNHLMKQIGIVPG----LEHYTCIVGLLSKAGLLDE  492 (709)
Q Consensus       423 ~~~~~~m~~~g~---~pd--~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~  492 (709)
                      +..|++......   .+.  ..++..+...+... |++++|...|++..+...-..+    ..++..+...|.+.|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            999999876211   111  34788888899986 9999999999998764321111    3568889999999999999


Q ss_pred             HHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchh-----HHHHHHHhh--hcCCc
Q 039873          493 AEKFMRST-PVKWD---V-----VAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGT-----YILLSNMYA--KEKRW  556 (709)
Q Consensus       493 A~~~~~~~-~~~pd---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~  556 (709)
                      |.+.|++. ...|+   .     ..|..+...+...|+++.|+..+++.++++|.....     +..++..|.  ..+++
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~  256 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL  256 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence            99998753 12222   1     156777778899999999999999999999875442     345566664  55778


Q ss_pred             hhHHHHHHHH
Q 039873          557 DGVSKIRKLM  566 (709)
Q Consensus       557 ~~a~~~~~~m  566 (709)
                      ++|.+.++.+
T Consensus       257 ~~A~~~~~~~  266 (292)
T 1qqe_A          257 SEHCKEFDNF  266 (292)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHhccC
Confidence            8888877554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.85  E-value=1.9e-07  Score=91.43  Aligned_cols=183  Identities=7%  Similarity=-0.050  Sum_probs=126.3

Q ss_pred             CChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHH
Q 039873          370 EHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-D---IITWNAMICGYSHHGLGREALTLFQNMLAAEE-RPN-HVTF  441 (709)
Q Consensus       370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd-~~t~  441 (709)
                      .+...+..+...+.+.|++++|...|+++..  | +   ...|..+..+|.+.|++++|+..|++...... .|+ ...+
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            3455666677778888888888888887763  3 2   45677777888888888888888888877421 112 3355


Q ss_pred             HHHHHHHhc--------cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 039873          442 VGVLSACGH--------LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLL  513 (709)
Q Consensus       442 ~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll  513 (709)
                      ..+..++..        .|++++|...|+.+++..+-.+.  ...++..+....+.+               ...+..+.
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~~~~~~~~~---------------~~~~~~la  155 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL--VDDATQKIRELRAKL---------------ARKQYEAA  155 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT--HHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh--HHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence            556666666        78888888888887765332222  222211111100000               11245667


Q ss_pred             HHHHhcCCchHHHHHHHHHHhcCCCC---chhHHHHHHHhhhc----------CCchhHHHHHHHHHhC
Q 039873          514 NASRVHQNYGFGRRIAEYILHMDPND---VGTYILLSNMYAKE----------KRWDGVSKIRKLMKVR  569 (709)
Q Consensus       514 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~  569 (709)
                      ..+...|+++.|+..++++++..|++   +..+..++.+|...          |++++|...++.+.+.
T Consensus       156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            78899999999999999999999874   45788899999877          9999999999998764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.83  E-value=8.6e-08  Score=94.64  Aligned_cols=206  Identities=11%  Similarity=0.053  Sum_probs=117.1

Q ss_pred             HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhH
Q 039873          302 VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINM  381 (709)
Q Consensus       302 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~  381 (709)
                      ..+|..+...|...|++++|+..|++..+...                            .......+....++..+...
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~~~~~~~l~~~   94 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIRE----------------------------KTLGKDHPAVAATLNNLAVL   94 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------HHTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH----------------------------HHcCCcchHHHHHHHHHHHH
Confidence            34566666677777777777777766653200                            00000001123344555556


Q ss_pred             HHhcCCHHHHHHHHhhcCC----------C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHH
Q 039873          382 YAKGGNIEAANKVFSDMRY----------R-DIITWNAMICGYSHHGLGREALTLFQNMLAA------EERPN-HVTFVG  443 (709)
Q Consensus       382 y~~~g~~~~A~~~f~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t~~~  443 (709)
                      |...|++++|...|++...          | ...+|..+...|...|++++|++.|++....      +-.|+ ..++..
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  174 (283)
T 3edt_B           95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN  174 (283)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            6666666666666555431          1 2346667777777778888888877777653      11332 346777


Q ss_pred             HHHHHhccccHHHHHHHHHHHHHhh------CCCCC-hHHHHHHHHHHHhcC------CHHHHHHHHHhCCCC-CC-HHH
Q 039873          444 VLSACGHLGLVQEGFYYLNHLMKQI------GIVPG-LEHYTCIVGLLSKAG------LLDEAEKFMRSTPVK-WD-VVA  508 (709)
Q Consensus       444 ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~-pd-~~~  508 (709)
                      +...+...|++++|..+++.+.+..      ...+. ...+..+...+...+      .+.++...++..... |+ ..+
T Consensus       175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (283)
T 3edt_B          175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT  254 (283)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            7778888888888888888776531      11222 223434444443333      344444455554322 32 567


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhc
Q 039873          509 WHTLLNASRVHQNYGFGRRIAEYILHM  535 (709)
Q Consensus       509 ~~~ll~~~~~~g~~~~a~~~~~~~~~~  535 (709)
                      |..+...+...|++++|...+++++++
T Consensus       255 ~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          255 LRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            788888999999999999999998875

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.80  E-value=1.5e-07  Score=92.11  Aligned_cols=199  Identities=13%  Similarity=0.005  Sum_probs=139.3

Q ss_pred             ccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCC---hhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C----ChhhHH
Q 039873          337 EFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEH---LIVGNALINMYAKGGNIEAANKVFSDMRY--R----DIITWN  407 (709)
Q Consensus       337 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~----~~~~~~  407 (709)
                      ...+......+...|++++|...+..+++.. +.+   ...+..+...|.+.|++++|...|++..+  |    ....+.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            3455566677889999999999999999865 333   56788899999999999999999998763  3    234677


Q ss_pred             HHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHH
Q 039873          408 AMICGYSH--------HGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYT  478 (709)
Q Consensus       408 ~li~~~~~--------~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~  478 (709)
                      .+..+|..        .|++++|+..|++....  .|+.. .....              ..+......     -...+.
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~~  152 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARKQY  152 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHHHH
Confidence            78888888        99999999999999984  45432 21111              111111000     011255


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCchHHHHHHHHHHhcCCCCch--
Q 039873          479 CIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVH----------QNYGFGRRIAEYILHMDPNDVG--  541 (709)
Q Consensus       479 ~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~--  541 (709)
                      .+...|.+.|++++|...|++. ...|+    ...+..+..++...          |++++|+..++++++..|+++.  
T Consensus       153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  232 (261)
T 3qky_A          153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR  232 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence            6778888999999999887754 11233    45666677777655          8889999999999999998753  


Q ss_pred             -hHHHHHHHhhhcCCch
Q 039873          542 -TYILLSNMYAKEKRWD  557 (709)
Q Consensus       542 -~~~~l~~~~~~~g~~~  557 (709)
                       .+..+..++...|+++
T Consensus       233 ~a~~~l~~~~~~~~~~~  249 (261)
T 3qky_A          233 TAEELYTRARQRLTELE  249 (261)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence             3344444554444443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.79  E-value=2.5e-07  Score=79.44  Aligned_cols=129  Identities=19%  Similarity=0.247  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873          405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL  484 (709)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  484 (709)
                      .|..+...|...|++++|+++|+++...+ +.+...+..+...+...|++++|..+++.+.+.   .             
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~-------------   65 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---D-------------   65 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C-------------
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---C-------------
Confidence            45556666666666777777666666532 223445555555555566666666666555432   1             


Q ss_pred             HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHH
Q 039873          485 SKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRK  564 (709)
Q Consensus       485 ~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~  564 (709)
                                        ..+...|..+...+...|++++|...++++++..|.+...+..++.+|...|++++|.+.++
T Consensus        66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  127 (136)
T 2fo7_A           66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ  127 (136)
T ss_dssp             ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence                              12344555555566666666666666666666666666666667777777777777777776


Q ss_pred             HHHh
Q 039873          565 LMKV  568 (709)
Q Consensus       565 ~m~~  568 (709)
                      ++.+
T Consensus       128 ~~~~  131 (136)
T 2fo7_A          128 KALE  131 (136)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            6654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.77  E-value=3.4e-07  Score=87.42  Aligned_cols=181  Identities=12%  Similarity=-0.007  Sum_probs=119.6

Q ss_pred             hhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 039873          372 LIVGNALINMYAKGGNIEAANKVFSDMRY--RD----IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV----TF  441 (709)
Q Consensus       372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~  441 (709)
                      ...+..+...+.+.|++++|...|+++..  |+    ...+..+..+|.+.|++++|++.|++..+.  .|+..    .+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~   81 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM   81 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence            34455566778888889999888888763  32    246777888888888888898888888874  34321    33


Q ss_pred             HHHHHHHhc------------------cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 039873          442 VGVLSACGH------------------LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVK  503 (709)
Q Consensus       442 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  503 (709)
                      ..+..++..                  .|++++|...|+.+++.++-.+.  .+.++..+    +.+....         
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~--a~~a~~~l----~~~~~~~---------  146 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY--TTDATKRL----VFLKDRL---------  146 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT--HHHHHHHH----HHHHHHH---------
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh--HHHHHHHH----HHHHHHH---------
Confidence            333333332                  45666777777666543222221  11111110    0000000         


Q ss_pred             CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc---hhHHHHHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873          504 WDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV---GTYILLSNMYAKEKRWDGVSKIRKLMKVRKV  571 (709)
Q Consensus       504 pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  571 (709)
                        ......+...+...|+++.|+..++++++..|+++   ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus       147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence              00112345567889999999999999999999875   5688999999999999999999999987654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.76  E-value=1.6e-08  Score=89.85  Aligned_cols=136  Identities=8%  Similarity=-0.080  Sum_probs=79.8

Q ss_pred             cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039873          416 HGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE  494 (709)
Q Consensus       416 ~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  494 (709)
                      .|++++|++.+++...  ..|+ ...+..+...|...|++++|.+.|+..++..  +-+...|..+..+|.+.|++++|.
T Consensus        10 ~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~   85 (150)
T 4ga2_A           10 KADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDKAV   85 (150)
T ss_dssp             HHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHHHH
Confidence            3444444444444432  1222 1233344444555555555555555544321  112345555555555666666665


Q ss_pred             HHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHH-HHHHHhcCCCCchhHHHHHHHhhhcCC
Q 039873          495 KFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRI-AEYILHMDPNDVGTYILLSNMYAKEKR  555 (709)
Q Consensus       495 ~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~  555 (709)
                      ..|++. .+.|+ ..+|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus        86 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           86 ECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            555432 23444 77788888888888888766554 588999999999999888888888775

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.72  E-value=4.8e-08  Score=109.85  Aligned_cols=167  Identities=10%  Similarity=-0.039  Sum_probs=132.8

Q ss_pred             HhcCCHHHHHHHHhhcC-----------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 039873          383 AKGGNIEAANKVFSDMR-----------YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGH  450 (709)
Q Consensus       383 ~~~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~  450 (709)
                      ...|++++|.+.|++..           ..+...|..+...|.+.|++++|++.|++..+.  .| +...+..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence            66788899988888765           345667888888899999999999999998874  45 45677788888888


Q ss_pred             cccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHH
Q 039873          451 LGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRR  527 (709)
Q Consensus       451 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~  527 (709)
                      .|++++|...|+++.+.   .| +...+..+..+|.+.|++++ ++.|++. ...|+ ...|..+..++...|++++|++
T Consensus       480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999988763   34 45678888888999999988 8877643 23454 7788888889999999999999


Q ss_pred             HHHHHHhcCCCCchhHHHHHHHhhhcCC
Q 039873          528 IAEYILHMDPNDVGTYILLSNMYAKEKR  555 (709)
Q Consensus       528 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~  555 (709)
                      .++++++++|++...+..++.+|...|+
T Consensus       556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          556 TLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            9999999999988889999999877665

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.71  E-value=6.8e-06  Score=88.10  Aligned_cols=201  Identities=7%  Similarity=-0.055  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHH-HHHhhc
Q 039873          320 EALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAAN-KVFSDM  398 (709)
Q Consensus       320 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~f~~~  398 (709)
                      .+..+|+++.... +.+...|...+.-+...|+.+.|+.+++.+++.  +.+...+.    .|+...+.++.. .+.+..
T Consensus       197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~  269 (493)
T 2uy1_A          197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKY  269 (493)
T ss_dssp             HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence            3556666666532 223344544555556667777777777777766  33333322    222211111110 111110


Q ss_pred             C------------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccccHHHHHHHHHHHH
Q 039873          399 R------------YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSAC-GHLGLVQEGFYYLNHLM  465 (709)
Q Consensus       399 ~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~~~~~~~  465 (709)
                      .            ......|...+..+.+.+..+.|..+|++. ... ..+...|......- ...++.+.|..+|+..+
T Consensus       270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al  347 (493)
T 2uy1_A          270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGL  347 (493)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            0            011235666666666666777777777777 211 12233332211111 11225777777777776


Q ss_pred             HhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 039873          466 KQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYIL  533 (709)
Q Consensus       466 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~  533 (709)
                      +.++-.  ...+...++...+.|+.+.|+.+|+...  .....|...+.--..+|+.+.+..++++..
T Consensus       348 ~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          348 LKHPDS--TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             HHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            654322  3345556666677777777777777762  245666666665566666666666665554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.70  E-value=2.4e-06  Score=83.94  Aligned_cols=78  Identities=9%  Similarity=-0.074  Sum_probs=37.4

Q ss_pred             CHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc----------CCCCchhHHHHHHHhhhcCCch
Q 039873          489 LLDEAEKFMRSTPVK-WDVVAWHTLLNASRVHQNYGFGRRIAEYILHM----------DPNDVGTYILLSNMYAKEKRWD  557 (709)
Q Consensus       489 ~~~~A~~~~~~~~~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------~p~~~~~~~~l~~~~~~~g~~~  557 (709)
                      +.++|..+|+++.-+ |+..+-..++.++.+.|++++|+..++.+.+.          +|+++.++..++..+...|+  
T Consensus       193 ~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--  270 (310)
T 3mv2_B          193 TATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--  270 (310)
T ss_dssp             TTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--
T ss_pred             cHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--
Confidence            455555555443211 22222222333455555555555555555443          35555555555555555554  


Q ss_pred             hHHHHHHHHHh
Q 039873          558 GVSKIRKLMKV  568 (709)
Q Consensus       558 ~a~~~~~~m~~  568 (709)
                      +|.++++++.+
T Consensus       271 ~a~~l~~qL~~  281 (310)
T 3mv2_B          271 DTEDLTNQLVK  281 (310)
T ss_dssp             TTHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.70  E-value=1.5e-06  Score=85.40  Aligned_cols=238  Identities=9%  Similarity=0.014  Sum_probs=156.0

Q ss_pred             hcCChHHHHHHHHhccCCC-HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHH
Q 039873          283 KCGKFSNAKKVFEGLETRN-VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHA  361 (709)
Q Consensus       283 ~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~  361 (709)
                      -.|.+..++.-...+...+ ...---+.++|...|++...         ..-.|....+. ++..+...+    +...++
T Consensus        25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~-~la~~~~~~----a~~~l~   90 (310)
T 3mv2_B           25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLD-LYVQFLDTK----NIEELE   90 (310)
T ss_dssp             TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHH-HHHHHHTTT----CCHHHH
T ss_pred             HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHH-HHHHHhccc----HHHHHH
Confidence            4566666666555543322 22222334667766666531         01122221222 222222222    455566


Q ss_pred             HHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 039873          362 HIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY-----RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP  436 (709)
Q Consensus       362 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  436 (709)
                      ..+..+ .++......+..+|...|++++|++++.+...     .+...+-.++..|.+.|+.+.|.+.+++|.+  ..|
T Consensus        91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~  167 (310)
T 3mv2_B           91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIE  167 (310)
T ss_dssp             HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSC
T ss_pred             HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCc
Confidence            555554 44555556888899999999999999998743     3556778888999999999999999999988  577


Q ss_pred             -----CHHHHHHHHHHH--hccc--cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-----
Q 039873          437 -----NHVTFVGVLSAC--GHLG--LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPV-----  502 (709)
Q Consensus       437 -----d~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----  502 (709)
                           +..+...+..++  ...|  .+.+|..+|+++..+   .|+......+..++.+.|++++|.+.++.+.-     
T Consensus       168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~  244 (310)
T 3mv2_B          168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV  244 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred             cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence                 356666666663  3334  899999999998543   45533334445589999999999999864311     


Q ss_pred             ------CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchh
Q 039873          503 ------KW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGT  542 (709)
Q Consensus       503 ------~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  542 (709)
                            .| |+.+.-.+|......|+  .|.++++++.+..|+++..
T Consensus       245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i  289 (310)
T 3mv2_B          245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI  289 (310)
T ss_dssp             TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence                  14 46666566666666776  8899999999999998643

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.69  E-value=3.5e-07  Score=90.99  Aligned_cols=174  Identities=9%  Similarity=-0.109  Sum_probs=127.2

Q ss_pred             HHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 039873          389 EAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQ  467 (709)
Q Consensus       389 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  467 (709)
                      +.....+......+...+..+...+.+.|++++|+..|++..+  ..|+ ...+..+...+...|++++|...++.+.. 
T Consensus       103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-  179 (287)
T 3qou_A          103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-  179 (287)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence            3344444444444555666777777888888888888888877  3554 45677777788888888888888877643 


Q ss_pred             hCCCCChHHHHHH-HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC--chh
Q 039873          468 IGIVPGLEHYTCI-VGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND--VGT  542 (709)
Q Consensus       468 ~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~  542 (709)
                        ..|+....... .-.+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++  ...
T Consensus       180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a  257 (287)
T 3qou_A          180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT  257 (287)
T ss_dssp             --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred             --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence              34554333222 22355667777777776543 2345 47888999999999999999999999999999987  788


Q ss_pred             HHHHHHHhhhcCCchhHHHHHHHHH
Q 039873          543 YILLSNMYAKEKRWDGVSKIRKLMK  567 (709)
Q Consensus       543 ~~~l~~~~~~~g~~~~a~~~~~~m~  567 (709)
                      +..|+.+|...|+.++|...+++..
T Consensus       258 ~~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          258 RXTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            9999999999999999998887654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.65  E-value=4.9e-07  Score=77.61  Aligned_cols=125  Identities=15%  Similarity=0.148  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh
Q 039873          305 WTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK  384 (709)
Q Consensus       305 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~  384 (709)
                      |..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...+..+.+.+ +.+..++..+...|.+
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence            4455555555555555555555554421 1122233333333334444444444444433332 2223333444444445


Q ss_pred             cCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873          385 GGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLA  431 (709)
Q Consensus       385 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  431 (709)
                      .|++++|...|+++.   ..+...|..+...|.+.|++++|.+.|+++..
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            555555554444433   12333444444555555555555555555443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.64  E-value=1.7e-06  Score=81.59  Aligned_cols=172  Identities=8%  Similarity=-0.104  Sum_probs=125.3

Q ss_pred             HHHHHhhcC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc----cHHHHHHHHHHHH
Q 039873          391 ANKVFSDMR-YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLG----LVQEGFYYLNHLM  465 (709)
Q Consensus       391 A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~~~  465 (709)
                      |.+.|++.. ..+..++..+...|...+++++|++.|++..+.|   +...+..+...+.. +    ++++|.++|+...
T Consensus         5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            334444333 3456677777777777788888888888877755   44555566666666 5    7888888888875


Q ss_pred             HhhCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCCchHHHHHHHHHH
Q 039873          466 KQIGIVPGLEHYTCIVGLLSK----AGLLDEAEKFMRSTP-VKWD---VVAWHTLLNASRV----HQNYGFGRRIAEYIL  533 (709)
Q Consensus       466 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~pd---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~  533 (709)
                      +.    -+...+..|..+|..    .+++++|.+.|++.- ..|.   +..+..|...|..    .++.++|...++++.
T Consensus        81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            52    245567777777776    788888888887543 3332   6778888888877    788999999999998


Q ss_pred             hcCCCCchhHHHHHHHhhhc-C-----CchhHHHHHHHHHhCCC
Q 039873          534 HMDPNDVGTYILLSNMYAKE-K-----RWDGVSKIRKLMKVRKV  571 (709)
Q Consensus       534 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~  571 (709)
                      +. |.++..+..|+.+|... |     ++++|.+.+++..+.|.
T Consensus       157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            88 55667888999998764 3     89999999998887653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.61  E-value=6.7e-07  Score=89.93  Aligned_cols=219  Identities=11%  Similarity=0.010  Sum_probs=145.4

Q ss_pred             cCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHH
Q 039873          315 NEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKV  394 (709)
Q Consensus       315 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~  394 (709)
                      .|++++|.+++++..+.. +..   +      +...++++.|...+..+               ...|...|++++|...
T Consensus         4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~   58 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA   58 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence            456777777777665421 111   0      11135666666666554               3467777888888877


Q ss_pred             HhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccccHHHHHHH
Q 039873          395 FSDMRY-----RD----IITWNAMICGYSHHGLGREALTLFQNMLAAE---ERPN--HVTFVGVLSACGHLGLVQEGFYY  460 (709)
Q Consensus       395 f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~pd--~~t~~~ll~a~~~~g~~~~a~~~  460 (709)
                      |.+...     .+    ..+|+.+...|...|++++|++.|++..+.-   -.|.  ..++..+...+.. |++++|...
T Consensus        59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~  137 (307)
T 2ifu_A           59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL  137 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            776542     11    3477888888999999999999998876521   1222  3467777788888 999999999


Q ss_pred             HHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCchHHHHH
Q 039873          461 LNHLMKQIGIVPG----LEHYTCIVGLLSKAGLLDEAEKFMRSTP-V---KWD----VVAWHTLLNASRVHQNYGFGRRI  528 (709)
Q Consensus       461 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~-~---~pd----~~~~~~ll~~~~~~g~~~~a~~~  528 (709)
                      |+.......-..+    ..++..+...|.+.|++++|++.|++.- +   .++    ...+..+...+...|+++.|...
T Consensus       138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~  217 (307)
T 2ifu_A          138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC  217 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9988663321111    3577888999999999999999877431 1   112    23556666677778999999999


Q ss_pred             HHHHHhcCCCCchh-----HHHHHHHhhhcCCchhHHH
Q 039873          529 AEYILHMDPNDVGT-----YILLSNMYAKEKRWDGVSK  561 (709)
Q Consensus       529 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~  561 (709)
                      +++.+ +.|....+     ...++..| ..|+.+.+.+
T Consensus       218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            99999 88865432     33455555 5666655555

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.59  E-value=1.3e-06  Score=98.18  Aligned_cols=189  Identities=12%  Similarity=-0.027  Sum_probs=146.2

Q ss_pred             hccCChhHHHHHHHHHH--------HhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHc
Q 039873          348 AGLSALRHGDLLHAHIE--------KSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHH  416 (709)
Q Consensus       348 ~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~  416 (709)
                      ...|++++|.+.++.++        +.. +.+...+..+...|.+.|++++|.+.|++..+   .+...|..+...|.+.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            67788899998888887        322 55677888889999999999999999998773   4677999999999999


Q ss_pred             CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 039873          417 GLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEK  495 (709)
Q Consensus       417 g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  495 (709)
                      |++++|++.|++..+  +.| +...+..+..++...|++++ .+.|+.+.+.  .+.+...|..+..+|.+.|++++|.+
T Consensus       481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999998  456 45678888889999999999 9999998763  12346788999999999999999999


Q ss_pred             HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----chHHHHHHHHHHhcCCCCchh
Q 039873          496 FMRST-PVKWD-VVAWHTLLNASRVHQN-----YGFGRRIAEYILHMDPNDVGT  542 (709)
Q Consensus       496 ~~~~~-~~~pd-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~  542 (709)
                      .+++. .+.|+ ...|..+..++...++     .+...++.+.+.++.+.++..
T Consensus       556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~  609 (681)
T 2pzi_A          556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV  609 (681)
T ss_dssp             HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred             HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence            99975 45676 6677777777655554     344444555555555544443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.58  E-value=3.8e-05  Score=82.30  Aligned_cols=338  Identities=8%  Similarity=0.016  Sum_probs=177.6

Q ss_pred             CChHHHHHHHhcCCC--CCcchHHHHHHHHHhCCC-hhHHHHHHHHhhhCCCCCC-ChhhHHHHHHHHhc----CCCchH
Q 039873           82 NQISIARQLFDNMRQ--RNVVSYSSLMTWYLHNGF-LLETLKLFKNMVSGDNLEP-NEYIFSIVLSSCSR----SGRGAE  153 (709)
Q Consensus        82 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~~~~~----~~~~~~  153 (709)
                      |+++.++.+|++...  |++..|...+.-..+.+. .+....+|+.....-|..| +...|...+..+..    .++.+.
T Consensus        28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~  107 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK  107 (493)
T ss_dssp             TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence            567777777766553  666666666665555442 3445555655542223323 44455555544332    234566


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------cCChHHHHHHHhhCCC----CCcccHHHHHHHHHhCCC
Q 039873          154 GRQCHGYVFKSGLVFCKYVRNALVELYTK-------------CLDVEMAKRLLDLLPG----YDVFEYNSVLNGLIENEC  216 (709)
Q Consensus       154 a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~  216 (709)
                      ++.+++.+++.....-..+|......-..             .+.+..|+.+++.+..    .+...|...+.--..++.
T Consensus       108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~  187 (493)
T 2uy1_A          108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM  187 (493)
T ss_dssp             HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence            67777777663221111122211111000             0112223333322211    133356555544322211


Q ss_pred             -------ccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHH
Q 039873          217 -------FRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSN  289 (709)
Q Consensus       217 -------~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~  289 (709)
                             .+.+..+|++++... .-+...|...+.-+...|+++.|..+++..++.  +.+...+..    |+...+.++
T Consensus       188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~  260 (493)
T 2uy1_A          188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEA  260 (493)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTH
T ss_pred             cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhH
Confidence                   234567888877643 234556666666777788899999999988888  444433332    333222121


Q ss_pred             H-HHHHHhcc------------CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHH--HHHHHhccCChh
Q 039873          290 A-KKVFEGLE------------TRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAV--MLNSAAGLSALR  354 (709)
Q Consensus       290 A-~~~~~~m~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~--ll~~~~~~~~~~  354 (709)
                      . ..+.+...            ......|-..+.-..+.+..+.|..+|.+. +.. ..+...|..  .+.. ...++.+
T Consensus       261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~-~~~~d~~  337 (493)
T 2uy1_A          261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY-YATGSRA  337 (493)
T ss_dssp             HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH-HHHCCSH
T ss_pred             HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH-HHCCChH
Confidence            1 11111110            011245666666666677788888888887 211 112122211  1111 1123678


Q ss_pred             HHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873          355 HGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLA  431 (709)
Q Consensus       355 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  431 (709)
                      .|+.+++..++.. +.+...+...++...+.|+.+.|..+|+++. +....|...+.--..+|+.+.+.++++++..
T Consensus       338 ~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          338 TPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8888888887753 3344455667777777888888888888874 3566677777666667777777777776653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.57  E-value=4.4e-07  Score=100.01  Aligned_cols=159  Identities=13%  Similarity=-0.009  Sum_probs=123.1

Q ss_pred             cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHH
Q 039873          385 GGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYY  460 (709)
Q Consensus       385 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~  460 (709)
                      .|++++|.+.|++..+   .+...|..+...|.+.|++++|++.|++..+.  .|+ ...+..+...+...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4789999999998764   35678999999999999999999999999984  554 66888889999999999999999


Q ss_pred             HHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCchHHHHHHHHHHhc
Q 039873          461 LNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVH---QNYGFGRRIAEYILHM  535 (709)
Q Consensus       461 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~  535 (709)
                      +++..+..  +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+...   |+.++|.+.++++++.
T Consensus        80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99987642  334678999999999999999999998754 2334 478888999999999   9999999999999999


Q ss_pred             CCCCchhHHHHH
Q 039873          536 DPNDVGTYILLS  547 (709)
Q Consensus       536 ~p~~~~~~~~l~  547 (709)
                      +|++...|..+.
T Consensus       158 ~p~~~~~~~~l~  169 (568)
T 2vsy_A          158 GVGAVEPFAFLS  169 (568)
T ss_dssp             TCCCSCHHHHTT
T ss_pred             CCcccChHHHhC
Confidence            999888887766

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.56  E-value=1e-07  Score=84.54  Aligned_cols=121  Identities=13%  Similarity=-0.012  Sum_probs=99.7

Q ss_pred             HHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 039873          445 LSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQN  521 (709)
Q Consensus       445 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~  521 (709)
                      ...+...|++++|+..+....   ...|+ ...+-.+..+|.+.|++++|++.|++. .+.|+ ..+|..+...+...|+
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence            345567789999999988763   34444 335567899999999999999998854 34554 8899999999999999


Q ss_pred             chHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHH-HHHHh
Q 039873          522 YGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIR-KLMKV  568 (709)
Q Consensus       522 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~-~~m~~  568 (709)
                      +++|+..++++++++|+++.++..++.+|.+.|++++|.+.+ ++..+
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999887764 66654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.56  E-value=4.5e-07  Score=82.73  Aligned_cols=157  Identities=6%  Similarity=-0.103  Sum_probs=101.3

Q ss_pred             HhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 039873          375 GNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHL  451 (709)
Q Consensus       375 ~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~  451 (709)
                      ...+...+.+.|++++|...|++..+   .+...|..+...|.+.|++++|+..|++....  .|+.. +..+...+.. 
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~-   84 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLEL-   84 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHH-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHH-
Confidence            44556667777888888888877663   35567777777777777777777777776553  33322 2111110000 


Q ss_pred             ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHH
Q 039873          452 GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIA  529 (709)
Q Consensus       452 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~  529 (709)
                                                       ...+...+|.+.+++. ...| +...|..+...+...|++++|+..+
T Consensus        85 ---------------------------------~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~  131 (176)
T 2r5s_A           85 ---------------------------------HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL  131 (176)
T ss_dssp             ---------------------------------HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------------------------HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence                                             0000111122222211 1234 4777888888888899999999999


Q ss_pred             HHHHhcCCCC--chhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          530 EYILHMDPND--VGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       530 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +++++.+|+.  ...+..++.+|...|+.++|...+++...
T Consensus       132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            9999988764  55888899999999999999888887653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.54  E-value=9.1e-07  Score=97.51  Aligned_cols=146  Identities=10%  Similarity=-0.068  Sum_probs=101.1

Q ss_pred             cCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHH
Q 039873          350 LSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLF  426 (709)
Q Consensus       350 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~  426 (709)
                      .|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+   .+...|..+...|...|++++|++.|
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            367788888888887654 44577788888888889999999998887653   35678888888889999999999999


Q ss_pred             HHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 039873          427 QNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA---GLLDEAEKFMRST  500 (709)
Q Consensus       427 ~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~  500 (709)
                      ++..+.  .| +...+..+..++...|++++|.+.++...+..  +.+...+..+...|...   |+.++|.+.+++.
T Consensus        81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            988874  45 45678888888888999999999988886642  23456778888888888   8899988887643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.53  E-value=4e-07  Score=80.39  Aligned_cols=101  Identities=13%  Similarity=0.086  Sum_probs=85.2

Q ss_pred             CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHH
Q 039873          469 GIVPG-LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYIL  545 (709)
Q Consensus       469 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  545 (709)
                      .+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~  109 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH  109 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence            33443 345667777888888888888887754 2345 48899999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCchhHHHHHHHHHhC
Q 039873          546 LSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       546 l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      ++.+|...|++++|.+.+++..+.
T Consensus       110 lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          110 TGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999998864

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.49  E-value=3.3e-06  Score=83.83  Aligned_cols=124  Identities=12%  Similarity=0.043  Sum_probs=55.8

Q ss_pred             hhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CChhhHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 039873          372 LIVGNALINMYAKGGNIEAANKVFSDMRY--RDIITWNA-MICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSA  447 (709)
Q Consensus       372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a  447 (709)
                      ...+..+...|.+.|++++|...|+++..  |+...+.. ....+.+.++.++|++.|++....  .| +...+..+..+
T Consensus       151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~  228 (287)
T 3qou_A          151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQ  228 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHH
Confidence            34444455555555555555555555542  22221111 112234444455555555555542  23 23344445555


Q ss_pred             HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 039873          448 CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFM  497 (709)
Q Consensus       448 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  497 (709)
                      +...|++++|...+..+.+...-..+...+..|+.+|...|+.++|...+
T Consensus       229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~  278 (287)
T 3qou_A          229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY  278 (287)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence            55555555555555555443211112334444444444444444444443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.48  E-value=2.1e-06  Score=80.66  Aligned_cols=153  Identities=10%  Similarity=0.032  Sum_probs=105.6

Q ss_pred             HHHhcCCHHHHHHHHhhcCC--C-ChhhHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHH
Q 039873          381 MYAKGGNIEAANKVFSDMRY--R-DIITWNA----------------MICGYSHHGLGREALTLFQNMLAAEERP-NHVT  440 (709)
Q Consensus       381 ~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t  440 (709)
                      .+.+.|++++|...|++...  | +...|..                +...|.+.|++++|+..|++..+  +.| +...
T Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~   90 (208)
T 3urz_A           13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDC   90 (208)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHH
Confidence            34455566666666555442  1 2233444                88888899999999999999888  456 4567


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCHH--HHHHHHHH
Q 039873          441 FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGL--LDEAEKFMRSTPVKWDVV--AWHTLLNA  515 (709)
Q Consensus       441 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~pd~~--~~~~ll~~  515 (709)
                      +..+...+...|++++|...|+.+++.   .| +...+..+...|...|.  .+++...++... .|+..  .|..+..+
T Consensus        91 ~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~  166 (208)
T 3urz_A           91 LEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLS  166 (208)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence            888888889999999999999988763   34 46678888888766654  344555566553 45533  34445556


Q ss_pred             HHhcCCchHHHHHHHHHHhcCCCC
Q 039873          516 SRVHQNYGFGRRIAEYILHMDPND  539 (709)
Q Consensus       516 ~~~~g~~~~a~~~~~~~~~~~p~~  539 (709)
                      +...|++++|+..+++++++.|+.
T Consensus       167 ~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          167 KLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCH
Confidence            667889999999999999999863

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.48  E-value=4.9e-07  Score=90.93  Aligned_cols=196  Identities=9%  Similarity=-0.070  Sum_probs=147.0

Q ss_pred             cCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 039873          350 LSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNM  429 (709)
Q Consensus       350 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  429 (709)
                      .|++++|.+++....+..- ..         .+...|++++|...|.+.           ...|...|++++|++.|.+.
T Consensus         4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a   62 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE   62 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence            4677888888888776421 11         111158899999887764           56788999999999999988


Q ss_pred             HHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 039873          430 LAA----EERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LEHYTCIVGLLSKAGLLDEAEKFMRST  500 (709)
Q Consensus       430 ~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~  500 (709)
                      .+.    |-.+. ..+|..+...+...|++++|...|+...+.+.-..+    ..++..+..+|.+ |++++|++.+++.
T Consensus        63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A  141 (307)
T 2ifu_A           63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA  141 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence            653    21111 347888888999999999999999988664321111    3577888899988 9999999987643


Q ss_pred             -CCC---CC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc------hhHHHHHHHhhhcCCchhHHHHHHHH
Q 039873          501 -PVK---WD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV------GTYILLSNMYAKEKRWDGVSKIRKLM  566 (709)
Q Consensus       501 -~~~---pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m  566 (709)
                       .+.   .+    ..++..+...+...|++++|+..+++++++.|.+.      ..+..++.+|...|++++|...+++.
T Consensus       142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a  221 (307)
T 2ifu_A          142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES  221 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             111   11    46778888899999999999999999998765432      36677788888999999999999988


Q ss_pred             H
Q 039873          567 K  567 (709)
Q Consensus       567 ~  567 (709)
                      .
T Consensus       222 l  222 (307)
T 2ifu_A          222 Y  222 (307)
T ss_dssp             T
T ss_pred             h
Confidence            7

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.46  E-value=2.7e-06  Score=77.54  Aligned_cols=157  Identities=11%  Similarity=0.030  Sum_probs=103.0

Q ss_pred             chHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHH-HHH
Q 039873          339 TFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--RDIITWNAMICG-YSH  415 (709)
Q Consensus       339 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~-~~~  415 (709)
                      .+......+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++...  |+...+..+... +..
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence            45556677889999999999999888764 55678889999999999999999999999874  333333222111 122


Q ss_pred             cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039873          416 HGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAE  494 (709)
Q Consensus       416 ~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  494 (709)
                      .+...+|++.|++..+  ..|+ ...+..+..++...|++++|...|+.+.+...-..+...+..+..+|...|+.++|.
T Consensus        87 ~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           87 QAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            2233346777777766  3453 456666666777777777777777766442111112345566666666666666666


Q ss_pred             HHHH
Q 039873          495 KFMR  498 (709)
Q Consensus       495 ~~~~  498 (709)
                      ..|+
T Consensus       165 ~~y~  168 (176)
T 2r5s_A          165 SKYR  168 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.46  E-value=1.4e-06  Score=74.38  Aligned_cols=108  Identities=12%  Similarity=-0.012  Sum_probs=62.3

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 039873          440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASR  517 (709)
Q Consensus       440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~  517 (709)
                      .+......+.+.|++++|.+.|+..++.  .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            3444445555555555555555555432  1223445555555555555555555555432 2233 3666777777777


Q ss_pred             hcCCchHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039873          518 VHQNYGFGRRIAEYILHMDPNDVGTYILLSNM  549 (709)
Q Consensus       518 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  549 (709)
                      ..|++++|++.++++++++|++...+..|.++
T Consensus        93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            77777777777777777777776666655543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.46  E-value=3.8e-06  Score=80.00  Aligned_cols=182  Identities=14%  Similarity=0.024  Sum_probs=127.6

Q ss_pred             chHHHHHHHhccCChhHHHHHHHHHHHhCCCC--ChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--CCh----hhHHHHH
Q 039873          339 TFAVMLNSAAGLSALRHGDLLHAHIEKSGFKE--HLIVGNALINMYAKGGNIEAANKVFSDMRY--RDI----ITWNAMI  410 (709)
Q Consensus       339 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~----~~~~~li  410 (709)
                      .+......+...|++++|...+..+++.....  ....+..+...|.+.|++++|...|+++.+  |+.    ..|..+.
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g   85 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG   85 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence            34455667888999999999999999864221  135677889999999999999999999763  332    1455555


Q ss_pred             HHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHHHhhCCC
Q 039873          411 CGYSH------------------HGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIV  471 (709)
Q Consensus       411 ~~~~~------------------~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~  471 (709)
                      .++..                  .|+.++|+..|+++.+  ..|+.. .....    ...+..      .....      
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~----~~l~~~------~~~~~------  147 (225)
T 2yhc_A           86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDAT----KRLVFL------KDRLA------  147 (225)
T ss_dssp             HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHH----HHHHHH------HHHHH------
T ss_pred             HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHH----HHHHHH------HHHHH------
Confidence            55554                  5789999999999998  456543 22111    111111      11110      


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch
Q 039873          472 PGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG  541 (709)
Q Consensus       472 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  541 (709)
                         ...-.+...|.+.|++++|...|++. ...|+    ...+..+..++.+.|+.++|++.++.+....|++..
T Consensus       148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence               12235677889999999999988754 22344    256788888999999999999999999988887643

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.46  E-value=1.7e-05  Score=78.93  Aligned_cols=161  Identities=12%  Similarity=-0.044  Sum_probs=116.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hHHHH
Q 039873          408 AMICGYSHHGLGREALTLFQNMLAAE-ERPNHV----TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LEHYT  478 (709)
Q Consensus       408 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~  478 (709)
                      ..+..+...|++++|.+++++..... ..|+..    .+..+...+...|++++|...++.+.+...-.++    ...++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            34667788888888888888887632 122221    2234555667777889999888888763222233    23688


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------chhH
Q 039873          479 CIVGLLSKAGLLDEAEKFMRST--------PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND------VGTY  543 (709)
Q Consensus       479 ~li~~~~~~g~~~~A~~~~~~~--------~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~  543 (709)
                      .+...|...|++++|.+.+++.        ...+. ..++..+...|...|++++|...+++++++.+..      +..|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            8888899999999888886643        11122 3477888889999999999999999998864322      5688


Q ss_pred             HHHHHHhhhcCC-chhHHHHHHHHHh
Q 039873          544 ILLSNMYAKEKR-WDGVSKIRKLMKV  568 (709)
Q Consensus       544 ~~l~~~~~~~g~-~~~a~~~~~~m~~  568 (709)
                      ..++.+|.+.|+ +++|.+.+++...
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            999999999995 6999999988764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.43  E-value=5.6e-06  Score=82.48  Aligned_cols=165  Identities=12%  Similarity=-0.033  Sum_probs=119.2

Q ss_pred             hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----h
Q 039873          404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-H----VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----L  474 (709)
Q Consensus       404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~  474 (709)
                      ..+...+..+...|++++|++.+++..+.....+ .    ..+..+...+...|++++|...+....+...-..+    .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            3455567778888999999999888877432211 1    12333445567788999999998887642211111    3


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC------C
Q 039873          475 EHYTCIVGLLSKAGLLDEAEKFMRSTP----VKWD-----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN------D  539 (709)
Q Consensus       475 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~pd-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~  539 (709)
                      ..++.+...|...|++++|.+.+++.-    ..|+     ..++..+...|...|++++|...+++++++.++      -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            478888999999999999998876431    1122     257888888999999999999999999876422      1


Q ss_pred             chhHHHHHHHhhhcCCchhH-HHHHHHHHh
Q 039873          540 VGTYILLSNMYAKEKRWDGV-SKIRKLMKV  568 (709)
Q Consensus       540 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~  568 (709)
                      ..+|..++.+|.+.|++++| ...+++...
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            56788999999999999999 777777653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.43  E-value=5.2e-06  Score=77.96  Aligned_cols=134  Identities=11%  Similarity=-0.063  Sum_probs=85.7

Q ss_pred             hHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 039873          376 NALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHL  451 (709)
Q Consensus       376 ~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~  451 (709)
                      +.+...|.+.|++++|...|++..   ..+...|..+...|...|++++|++.|++..+  +.|+ ..++..+...+...
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLT  135 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence            446777888888888888887765   23567788888888888888888888888887  4554 45666666666555


Q ss_pred             cc--HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCHHHHHHHHH
Q 039873          452 GL--VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS-TPVKWDVVAWHTLLN  514 (709)
Q Consensus       452 g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~pd~~~~~~ll~  514 (709)
                      |.  .+.+...+....   ...|....+..+...+...|++++|...|++ +.+.|+......+..
T Consensus       136 ~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~  198 (208)
T 3urz_A          136 AEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK  198 (208)
T ss_dssp             HHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            43  333444444431   2222222333445566677888888888874 456677665555444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.43  E-value=5.2e-06  Score=78.06  Aligned_cols=97  Identities=15%  Similarity=0.062  Sum_probs=66.8

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc----------
Q 039873          473 GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV----------  540 (709)
Q Consensus       473 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----------  540 (709)
                      +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++..|.+.          
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  115 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  115 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence            3344444444444444444444444321 1122 356677777777778888888888888888777665          


Q ss_pred             ------hhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          541 ------GTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       541 ------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                            ..+..++.+|...|++++|.+.++...+.
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence                  88999999999999999999999998764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.41  E-value=3e-05  Score=76.84  Aligned_cols=63  Identities=13%  Similarity=0.262  Sum_probs=31.1

Q ss_pred             CHHHHHHHHHHHHhcCCc-hHHHHHHHHHHhcC---CCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873          505 DVVAWHTLLNASRVHQNY-GFGRRIAEYILHMD---PNDVGTYILLSNMYAKEKRWDGVSKIRKLMK  567 (709)
Q Consensus       505 d~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  567 (709)
                      |...|+-+-..+.+.|+. +.....++++.+++   |.++..+..++++|.+.|+.++|.++++.+.
T Consensus       219 n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~  285 (306)
T 3dra_A          219 NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK  285 (306)
T ss_dssp             CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            355555555444444442 22333444444433   4444555555555555555555555555554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.40  E-value=9.9e-07  Score=87.36  Aligned_cols=192  Identities=7%  Similarity=-0.098  Sum_probs=126.4

Q ss_pred             ChhHHhHHHhHHHhcCCHHHHHHHHhhcC--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 039873          371 HLIVGNALINMYAKGGNIEAANKVFSDMR--Y-RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLS  446 (709)
Q Consensus       371 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~  446 (709)
                      +...+..+...|.+.|++++|...|++..  . .+...|..+...|.+.|++++|++.+++..+  +.|+ ...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            34456667777888888888888888765  2 3667788888888888888888888888877  3454 557777778


Q ss_pred             HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHH
Q 039873          447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGR  526 (709)
Q Consensus       447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~  526 (709)
                      ++...|++++|...|....+...-.+.  .+...+....+......... .......++......+ ..+. .|+.+.|.
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A~  155 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRL--NFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAEREREL  155 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTC--CCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHHH
Confidence            888888888888888877653221111  11111211111111111111 2222233344443333 3332 68889999


Q ss_pred             HHHHHHHhcCCCCchhHHHHHHHhhhc-CCchhHHHHHHHHHhC
Q 039873          527 RIAEYILHMDPNDVGTYILLSNMYAKE-KRWDGVSKIRKLMKVR  569 (709)
Q Consensus       527 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~  569 (709)
                      +.++++++.+|++......+...+.+. +++++|.++|..+.+.
T Consensus       156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999999999998877777777777776 7899999999988753

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.40  E-value=9.2e-05  Score=73.33  Aligned_cols=160  Identities=10%  Similarity=0.100  Sum_probs=121.7

Q ss_pred             CCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc------H
Q 039873          386 GNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGR--EALTLFQNMLAAEERPNHVTFVGVLSACGHLGL------V  454 (709)
Q Consensus       386 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~------~  454 (709)
                      +++++++.+++++.   .+|..+|+--...+.+.|.++  ++++.++++.+.. .-|...|..-.....+.+.      +
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence            67788888888776   357778888888888888888  9999999999854 3355566665555666665      8


Q ss_pred             HHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCCchHHHHH
Q 039873          455 QEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDE-AEKFMRSTP-V----KWDVVAWHTLLNASRVHQNYGFGRRI  528 (709)
Q Consensus       455 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~-~----~pd~~~~~~ll~~~~~~g~~~~a~~~  528 (709)
                      +++++++..++..  .+-|...|+-+-.++.+.|+..+ +.++..+.- .    ..+...+..+...+.+.|+.++|.++
T Consensus       203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence            9999999988763  34567788888889999998555 445655431 1    23688899999999999999999999


Q ss_pred             HHHHHh-cCCCCchhHHHHHH
Q 039873          529 AEYILH-MDPNDVGTYILLSN  548 (709)
Q Consensus       529 ~~~~~~-~~p~~~~~~~~l~~  548 (709)
                      ++.+.+ .+|-....+.-.++
T Consensus       281 ~~~l~~~~Dpir~~yW~~~~~  301 (306)
T 3dra_A          281 YDLLKSKYNPIRSNFWDYQIS  301 (306)
T ss_dssp             HHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHhccChHHHHHHHHHHh
Confidence            999996 79987666655443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.40  E-value=2e-06  Score=75.83  Aligned_cols=96  Identities=11%  Similarity=0.040  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhh
Q 039873          474 LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYA  551 (709)
Q Consensus       474 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  551 (709)
                      ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            445666777888888888888887753 2234 58888889999999999999999999999999999999999999999


Q ss_pred             hcCCchhHHHHHHHHHhC
Q 039873          552 KEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       552 ~~g~~~~a~~~~~~m~~~  569 (709)
                      ..|++++|.+.++...+.
T Consensus       101 ~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A          101 QXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            999999999999988763

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.40  E-value=1.7e-06  Score=73.85  Aligned_cols=99  Identities=9%  Similarity=0.050  Sum_probs=87.8

Q ss_pred             CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873          470 IVPG-LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL  546 (709)
Q Consensus       470 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  546 (709)
                      +.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            4454 356777889999999999999998753 3345 488999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCchhHHHHHHHHHh
Q 039873          547 SNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       547 ~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +.+|...|++++|.+.+++..+
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999876

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.35  E-value=1.3e-05  Score=75.36  Aligned_cols=144  Identities=10%  Similarity=-0.045  Sum_probs=96.6

Q ss_pred             hHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 039873          376 NALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQ  455 (709)
Q Consensus       376 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~  455 (709)
                      ..+...|.+.|++++|...|++...++...|..+...|...|++++|++.|++..... +.+...+..+..++...|+++
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~   88 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD   88 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence            3455667777888888888887777777777777777788888888888887777642 224456666667777777777


Q ss_pred             HHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 039873          456 EGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILH  534 (709)
Q Consensus       456 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  534 (709)
                      +|...|+...+...-.+...        +...           .....|+ ...|..+...+...|++++|...++++++
T Consensus        89 ~A~~~~~~al~~~~~~~~~~--------~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           89 LAIKDLKEALIQLRGNQLID--------YKIL-----------GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HHHHHHHHHHHTTTTCSEEE--------CGGG-----------TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCccHHH--------HHHh-----------ccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            77777777655321111100        0000           0012233 46777888888899999999999999999


Q ss_pred             cCCCC
Q 039873          535 MDPND  539 (709)
Q Consensus       535 ~~p~~  539 (709)
                      +.|++
T Consensus       150 ~~p~~  154 (213)
T 1hh8_A          150 MKSEP  154 (213)
T ss_dssp             TCCSG
T ss_pred             cCccc
Confidence            98865

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.35  E-value=3.5e-06  Score=73.59  Aligned_cols=95  Identities=16%  Similarity=0.035  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873          475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK  552 (709)
Q Consensus       475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  552 (709)
                      ..+..+...+.+.|++++|.+.|+.. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|..
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            34556667778888888888887743 2234 588888888999999999999999999999999999999999999999


Q ss_pred             cCCchhHHHHHHHHHhC
Q 039873          553 EKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       553 ~g~~~~a~~~~~~m~~~  569 (709)
                      .|++++|.+.++...+.
T Consensus        99 ~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           99 LGDLDGAESGFYSARAL  115 (142)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999999988763

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.35  E-value=2.3e-05  Score=73.69  Aligned_cols=110  Identities=10%  Similarity=-0.036  Sum_probs=66.1

Q ss_pred             ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh----cCCHHHHHHHHhhcCCCC-----hhhHHHHHHHHHH----cCC
Q 039873          352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK----GGNIEAANKVFSDMRYRD-----IITWNAMICGYSH----HGL  418 (709)
Q Consensus       352 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~----~g~  418 (709)
                      +.++|...+....+.|   +...+..|..+|..    .+++++|...|++..+.+     ..++..|...|..    .++
T Consensus        68 ~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d  144 (212)
T 3rjv_A           68 DYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED  144 (212)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence            4444555554444433   34444555555555    667777777777766432     4677777777777    667


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-c-----cHHHHHHHHHHHHH
Q 039873          419 GREALTLFQNMLAAEERPNHVTFVGVLSACGHL-G-----LVQEGFYYLNHLMK  466 (709)
Q Consensus       419 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~-g-----~~~~a~~~~~~~~~  466 (709)
                      +++|++.|++..+.  .++...+..+...+... |     ++++|..+|+...+
T Consensus       145 ~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~  196 (212)
T 3rjv_A          145 DVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL  196 (212)
T ss_dssp             HHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence            77888888777764  22333455555555432 2     67777777777655

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.32  E-value=5.6e-05  Score=75.11  Aligned_cols=93  Identities=13%  Similarity=0.048  Sum_probs=57.0

Q ss_pred             HHhHHHhHHHhcCCHHHHHHHHhhcCC------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-H
Q 039873          374 VGNALINMYAKGGNIEAANKVFSDMRY------R----DIITWNAMICGYSHHGLGREALTLFQNMLAA----EERPN-H  438 (709)
Q Consensus       374 ~~~~li~~y~~~g~~~~A~~~f~~~~~------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~  438 (709)
                      +++.+...|...|++++|...|+++.+      .    ...+|..+...|.+.|++++|++.+++..+.    +..+. .
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~  236 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            355555666666666666666555441      1    1236666777777777777777777766542    22222 4


Q ss_pred             HHHHHHHHHHhccc-cHHHHHHHHHHHHH
Q 039873          439 VTFVGVLSACGHLG-LVQEGFYYLNHLMK  466 (709)
Q Consensus       439 ~t~~~ll~a~~~~g-~~~~a~~~~~~~~~  466 (709)
                      .++..+..++...| .+++|.+.++.+..
T Consensus       237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            56677777777777 45777777777654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.32  E-value=8.3e-06  Score=68.64  Aligned_cols=113  Identities=20%  Similarity=0.207  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 039873          440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PV-KWDVVAWHTLLNASR  517 (709)
Q Consensus       440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~pd~~~~~~ll~~~~  517 (709)
                      ++..+...+...|++++|...++.+.+..  +.+...+..+...+.+.|++++|...+++. .. ..+..+|..+...+.
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            34444444445555555555555544321  123344555555566666666666655432 11 234667778888888


Q ss_pred             hcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC
Q 039873          518 VHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK  554 (709)
Q Consensus       518 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  554 (709)
                      ..|+++.|...++++++..|+++..+..+..++...|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            8888999999999998888888888888877776544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.31  E-value=4.1e-06  Score=85.22  Aligned_cols=159  Identities=13%  Similarity=0.034  Sum_probs=110.8

Q ss_pred             CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 039873          387 NIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNH  463 (709)
Q Consensus       387 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~  463 (709)
                      ++++|...|+....   .+...|..+...|.+.|++++|+..|++....  .|+...+           ..+++.+.-..
T Consensus       128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~~~  194 (336)
T 1p5q_A          128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQAL  194 (336)
T ss_dssp             EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHHHH
T ss_pred             ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHHHH
Confidence            34444444444331   24456777777777888888888888777763  3332100           00111111000


Q ss_pred             HHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch
Q 039873          464 LMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG  541 (709)
Q Consensus       464 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  541 (709)
                               ....|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..++++++++|++..
T Consensus       195 ---------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  265 (336)
T 1p5q_A          195 ---------RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA  265 (336)
T ss_dssp             ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence                     1346777888888888888888887643 2334 4888899999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhcCCchhH-HHHHHHHH
Q 039873          542 TYILLSNMYAKEKRWDGV-SKIRKLMK  567 (709)
Q Consensus       542 ~~~~l~~~~~~~g~~~~a-~~~~~~m~  567 (709)
                      .+..+..+|...|++++| ...++.|.
T Consensus       266 a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          266 AKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999 55666664

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.30  E-value=1e-05  Score=72.33  Aligned_cols=125  Identities=7%  Similarity=-0.035  Sum_probs=81.9

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 039873          442 VGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVH  519 (709)
Q Consensus       442 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~  519 (709)
                      ..+...+...|++++|...|....+.  .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+...
T Consensus        17 ~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~   94 (166)
T 1a17_A           17 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   94 (166)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence            33344444555555555555554432  1123445555566666666666666665432 1123 467788888888899


Q ss_pred             CCchHHHHHHHHHHhcCCCCchhHHH--HHHHhhhcCCchhHHHHHHHHHh
Q 039873          520 QNYGFGRRIAEYILHMDPNDVGTYIL--LSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       520 g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      |++++|...++++++..|.+...+..  ++..+...|++++|.+.+....+
T Consensus        95 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            99999999999999999988777744  44447888999999999887653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.27  E-value=1.2e-05  Score=68.25  Aligned_cols=116  Identities=9%  Similarity=-0.086  Sum_probs=75.5

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 039873          440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASR  517 (709)
Q Consensus       440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~  517 (709)
                      .+..+...+...|++++|...++.....  .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            3444444455555555555555554432  1123445555556666666666666655432 1123 3667777888888


Q ss_pred             hcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCch
Q 039873          518 VHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWD  557 (709)
Q Consensus       518 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  557 (709)
                      ..|+++.|...++++++..|++...+..++.++...|+++
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            8899999999999999999988888888888888888753

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.22  E-value=1.2e-05  Score=68.74  Aligned_cols=118  Identities=8%  Similarity=-0.024  Sum_probs=73.7

Q ss_pred             ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHH
Q 039873          402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCI  480 (709)
Q Consensus       402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l  480 (709)
                      +...|..+...+.+.|++++|++.|++....  .| +...+..+...+...|++++|...++.+.+.   .         
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~---------   80 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---E---------   80 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---C---------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---C---------
Confidence            3445555566666666666666666665552  23 3334444444455555555555555444331   1         


Q ss_pred             HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCC
Q 039873          481 VGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKR  555 (709)
Q Consensus       481 i~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  555 (709)
                                            ..+...|..+...+...|++++|...++++++.+|.+...+..+..+|...|+
T Consensus        81 ----------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           81 ----------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             ----------------------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence                                  12456677777778888888888888888888888888888888888776653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.22  E-value=3.6e-06  Score=81.52  Aligned_cols=133  Identities=14%  Similarity=0.014  Sum_probs=83.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hHHHHHHHH
Q 039873          407 NAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LEHYTCIVG  482 (709)
Q Consensus       407 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~  482 (709)
                      -.+...+...|++++|.++|+.+...  .|+......+...+.+.+++++|+..|+...+    .|+    ...+..+..
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~~~a~~~LG~  179 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLAGAAGVAHGV  179 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccHHHHHHHHHH
Confidence            34455566667777777777666553  35444444444456667777777777764321    121    224556667


Q ss_pred             HHHhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873          483 LLSKAGLLDEAEKFMRSTP---VKWD--VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL  546 (709)
Q Consensus       483 ~~~~~g~~~~A~~~~~~~~---~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  546 (709)
                      ++.+.|++++|++.|++..   ..|.  ...+..+..+++..|+.++|...++++...+|+ ......|
T Consensus       180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            7777777777777776541   1133  335666677788888888888888888888887 5555444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.21  E-value=4.2e-06  Score=81.08  Aligned_cols=181  Identities=7%  Similarity=-0.088  Sum_probs=134.2

Q ss_pred             hcCCHHHHHHHHhhcCC--C-ChhhHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 039873          384 KGGNIEAANKVFSDMRY--R-DIITWNAM-------ICGYSHHGLGREALTLFQNMLAAEERPNHV--------------  439 (709)
Q Consensus       384 ~~g~~~~A~~~f~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--------------  439 (709)
                      ..++.+.|.+.|.++..  | ....|+.+       ...+...++..+++..+++-..  +.|+..              
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence            46888888888888763  3 44678877       4555555556666665555444  333321              


Q ss_pred             --------HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 039873          440 --------TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDV----V  507 (709)
Q Consensus       440 --------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~----~  507 (709)
                              ....+...+...|++++|.+.|..+..   ..|+....-.+...+.+.|++++|+..|+.....|+.    .
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~  172 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA  172 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence                    223345667889999999999987643   3455446666777899999999999999866444443    3


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcC--CC-CchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          508 AWHTLLNASRVHQNYGFGRRIAEYILHMD--PN-DVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       508 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      .+..+..++...|++++|+..++++....  |. .+.....++.++.+.|+.++|..+|+++.+.
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            67778889999999999999999998643  54 4457789999999999999999999999874

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.21  E-value=4.5e-05  Score=75.79  Aligned_cols=163  Identities=14%  Similarity=0.038  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHH
Q 039873          304 LWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYA  383 (709)
Q Consensus       304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~  383 (709)
                      .+...+..+...|++++|++.+.+..+.... +.... ..                            ...+..+...|.
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~-~~----------------------------~~~~~~~~~~~~  126 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQ-QF----------------------------LQWQYYVAAYVL  126 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHH-HH----------------------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHH-HH----------------------------HHHHHHHHHHHh
Confidence            4445566677777888887777766653211 10000 00                            001112333444


Q ss_pred             hcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHH
Q 039873          384 KGGNIEAANKVFSDMRY-----RD----IITWNAMICGYSHHGLGREALTLFQNMLAA-EERPN-----HVTFVGVLSAC  448 (709)
Q Consensus       384 ~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd-----~~t~~~ll~a~  448 (709)
                      ..|++++|...|++...     .+    ..+|+.+...|...|++++|++.|++.... ...|+     ..++..+...+
T Consensus       127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y  206 (293)
T 2qfc_A          127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL  206 (293)
T ss_dssp             TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence            55555555555544321     11    225555666666666666666666665421 01111     13555566666


Q ss_pred             hccccHHHHHHHHHHHHHhh---CCCCC-hHHHHHHHHHHHhcCCHHHH-HHH
Q 039873          449 GHLGLVQEGFYYLNHLMKQI---GIVPG-LEHYTCIVGLLSKAGLLDEA-EKF  496 (709)
Q Consensus       449 ~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A-~~~  496 (709)
                      ...|++++|..+++...+..   +.... ...|..+...|.+.|++++| ...
T Consensus       207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~  259 (293)
T 2qfc_A          207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA  259 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            66666666666666654321   11111 34566666666666666666 443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.20  E-value=4.1e-06  Score=76.25  Aligned_cols=118  Identities=8%  Similarity=0.047  Sum_probs=81.5

Q ss_pred             ccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCc--hH
Q 039873          450 HLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNA-SRVHQNY--GF  524 (709)
Q Consensus       450 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~-~~~~g~~--~~  524 (709)
                      ..|++++|...++...+..  +.+...+..+...|...|++++|.+.+++. ...| +...|..+... +...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            4556666666666655431  223456666677777777777777766543 1123 46667777777 6678887  88


Q ss_pred             HHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          525 GRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       525 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      |+..++++++.+|+++..+..++.+|...|++++|...++...+.
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            888888888888888888888888888889999998888888764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.20  E-value=7.4e-06  Score=69.68  Aligned_cols=95  Identities=13%  Similarity=-0.013  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873          475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK  552 (709)
Q Consensus       475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  552 (709)
                      ..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            35666677788888888888887643 2234 478888888899999999999999999999999999999999999999


Q ss_pred             cCCchhHHHHHHHHHhC
Q 039873          553 EKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       553 ~g~~~~a~~~~~~m~~~  569 (709)
                      .|++++|.+.+++..+.
T Consensus        85 ~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           85 VKEYASALETLDAARTK  101 (126)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHh
Confidence            99999999999988763

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.19  E-value=2.2e-05  Score=72.87  Aligned_cols=156  Identities=12%  Similarity=-0.022  Sum_probs=80.2

Q ss_pred             hcCCHHHHHH---HHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccccHH
Q 039873          384 KGGNIEAANK---VFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAA----EERPN-HVTFVGVLSACGHLGLVQ  455 (709)
Q Consensus       384 ~~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~  455 (709)
                      ..|++++|.+   .+..-+.....+++.+...|...|++++|+..|++....    |..|. ..++..+...+...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            3456666666   443322234455666666666666666666666665441    11111 223444444455555555


Q ss_pred             HHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 039873          456 EGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKW--DVVAWHTLLNASRVHQNYGFGRRIAEYIL  533 (709)
Q Consensus       456 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p--d~~~~~~ll~~~~~~g~~~~a~~~~~~~~  533 (709)
                      +|...++.......                             ..+..|  ...++..+...+...|++++|...+++.+
T Consensus        84 ~A~~~~~~al~~~~-----------------------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           84 AARRCFLEERELLA-----------------------------SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHH-----------------------------HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-----------------------------HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            55555544433211                             111011  12334455555666666666666666665


Q ss_pred             hcC--CCC----chhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          534 HMD--PND----VGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       534 ~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ++.  ..+    ...+..++.+|...|++++|.+.+++..+
T Consensus       135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            432  111    22356777788888888888888777654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.18  E-value=5.4e-06  Score=77.12  Aligned_cols=171  Identities=9%  Similarity=-0.073  Sum_probs=104.6

Q ss_pred             HHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccH
Q 039873          378 LINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLV  454 (709)
Q Consensus       378 li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~  454 (709)
                      .+......|++++|.+.|+.-..   .....|..+...+...|++++|++.|++....  .|+...+...        ..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~   79 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------IL   79 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hH
Confidence            33444556777777777764432   23456777888888899999999999988873  3321111000        00


Q ss_pred             HHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 039873          455 QEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYI  532 (709)
Q Consensus       455 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~  532 (709)
                      ..-.   ..+        ....+..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+++.|+..++++
T Consensus        80 ~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  148 (198)
T 2fbn_A           80 LDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA  148 (198)
T ss_dssp             HHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            0000   000        1245667777888888888888877643 2234 4778888889999999999999999999


Q ss_pred             HhcCCCCchhHHHHHHHhhhcCCchhHH-HHHHHHHhC
Q 039873          533 LHMDPNDVGTYILLSNMYAKEKRWDGVS-KIRKLMKVR  569 (709)
Q Consensus       533 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~  569 (709)
                      ++++|++...+..+..++...|+.+++. ..++.|..+
T Consensus       149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred             HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999988888877 555555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.17  E-value=4.8e-05  Score=70.54  Aligned_cols=128  Identities=13%  Similarity=0.002  Sum_probs=78.4

Q ss_pred             ChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-
Q 039873          371 HLIVGNALINMYAKGGNIEAANKVFSDMRY---------RDIITWNAMICGYSHHGLGREALTLFQNMLAA----EERP-  436 (709)
Q Consensus       371 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-  436 (709)
                      ...++..+...|...|++++|...|++...         ....+++.+...|...|++++|++.|++....    |-.| 
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            344555666667777777777766665542         12346777788888888888888888876652    1112 


Q ss_pred             -CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHH
Q 039873          437 -NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG----LEHYTCIVGLLSKAGLLDEAEKFMR  498 (709)
Q Consensus       437 -d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~  498 (709)
                       ....+..+...+...|++++|...++.......-..+    ...+..+...+.+.|++++|.+.++
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  171 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL  171 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence             1234666667777788888888888776542111111    1234555566666666666665554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.15  E-value=5.9e-06  Score=69.85  Aligned_cols=94  Identities=14%  Similarity=0.037  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhc
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKE  553 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  553 (709)
                      .+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3455667788889999999888754 2345 5888888889999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHhC
Q 039873          554 KRWDGVSKIRKLMKVR  569 (709)
Q Consensus       554 g~~~~a~~~~~~m~~~  569 (709)
                      |++++|...+++..+.
T Consensus        99 g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           99 HNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999988764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.15  E-value=3.3e-05  Score=68.95  Aligned_cols=127  Identities=10%  Similarity=-0.069  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873          405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL  484 (709)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  484 (709)
                      .|..+...+...|++++|+..|++..... +.+..++..+...+...|++++|...+....+.  .+.+...+..+...|
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence            34444455555555555555555554421 123344445555555555555555555555442  122344455555555


Q ss_pred             HhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCCchHHHHHHHHHHh
Q 039873          485 SKAGLLDEAEKFMRST-PVKW-DVVAWHT--LLNASRVHQNYGFGRRIAEYILH  534 (709)
Q Consensus       485 ~~~g~~~~A~~~~~~~-~~~p-d~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~  534 (709)
                      .+.|++++|.+.+++. ...| +...|..  +...+...|++++|...+++..+
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            5555555555555432 1122 2333322  22224455666666666665543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.14  E-value=1.4e-05  Score=65.73  Aligned_cols=97  Identities=11%  Similarity=0.049  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 039873          474 LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN--DVGTYILLSNM  549 (709)
Q Consensus       474 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~  549 (709)
                      ...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.  +...+..++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            345566777777888888888777643 1223 4778888888889999999999999999999998  88899999999


Q ss_pred             hhhc-CCchhHHHHHHHHHhCC
Q 039873          550 YAKE-KRWDGVSKIRKLMKVRK  570 (709)
Q Consensus       550 ~~~~-g~~~~a~~~~~~m~~~~  570 (709)
                      |... |++++|.+.++...+..
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHhCCHHHHHHHHHHHhhcc
Confidence            9999 99999999999887654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.12  E-value=1.7e-05  Score=68.40  Aligned_cols=98  Identities=11%  Similarity=-0.056  Sum_probs=80.8

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039873          472 PGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNM  549 (709)
Q Consensus       472 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  549 (709)
                      .+...+..+...+.+.|++++|.+.|+.. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            34566777777788888888888877643 2234 477888888889999999999999999999999999999999999


Q ss_pred             hhhcCCchhHHHHHHHHHhC
Q 039873          550 YAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       550 ~~~~g~~~~a~~~~~~m~~~  569 (709)
                      |...|++++|...++...+.
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999988764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.11  E-value=1.2e-05  Score=72.14  Aligned_cols=94  Identities=9%  Similarity=-0.042  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873          475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK  552 (709)
Q Consensus       475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  552 (709)
                      ..+..+...|.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|..
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   91 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD   91 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34555556666666666666665532 2223 466666666677777777777777777777777777777777777777


Q ss_pred             cCCchhHHHHHHHHHh
Q 039873          553 EKRWDGVSKIRKLMKV  568 (709)
Q Consensus       553 ~g~~~~a~~~~~~m~~  568 (709)
                      .|++++|.+.+++..+
T Consensus        92 ~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           92 MADYKGAKEAYEKGIE  107 (164)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHH
Confidence            7777777777776665

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.07  E-value=2.6e-05  Score=66.52  Aligned_cols=97  Identities=8%  Similarity=-0.032  Sum_probs=85.2

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh
Q 039873          473 GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY  550 (709)
Q Consensus       473 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  550 (709)
                      +...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++..|++...+..++.+|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            3567778888899999999999988753 3344 5788888999999999999999999999999999999999999999


Q ss_pred             hhcCCchhHHHHHHHHHhC
Q 039873          551 AKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       551 ~~~g~~~~a~~~~~~m~~~  569 (709)
                      ...|++++|.+.+++..+.
T Consensus        95 ~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHh
Confidence            9999999999999998764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.07  E-value=2.2e-05  Score=71.29  Aligned_cols=127  Identities=9%  Similarity=0.101  Sum_probs=89.5

Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHH-HHhcCCH--
Q 039873          414 SHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGL-LSKAGLL--  490 (709)
Q Consensus       414 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--  490 (709)
                      ...|++++|++.|++..... +.+...+..+...+...|++++|...|+.+.+..  +.+...+..+..+ |.+.|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence            34567777777777776642 2345677777777788888888888888776542  2245567777777 7788887  


Q ss_pred             HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhH
Q 039873          491 DEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTY  543 (709)
Q Consensus       491 ~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  543 (709)
                      ++|.+.+++. ...| +...|..+...+...|+++.|...++++++..|++....
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            8888887643 2234 477888888899999999999999999999999875433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.06  E-value=3.1e-05  Score=64.96  Aligned_cols=96  Identities=22%  Similarity=0.258  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhh
Q 039873          474 LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYA  551 (709)
Q Consensus       474 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  551 (709)
                      ...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            457788899999999999999998754 1223 57889999999999999999999999999999999999999999999


Q ss_pred             hcCCchhHHHHHHHHHhC
Q 039873          552 KEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       552 ~~g~~~~a~~~~~~m~~~  569 (709)
                      ..|++++|.+.++++.+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHh
Confidence            999999999999998764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.06  E-value=1.5e-05  Score=70.18  Aligned_cols=100  Identities=8%  Similarity=-0.039  Sum_probs=55.1

Q ss_pred             hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHH
Q 039873          403 IITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIV  481 (709)
Q Consensus       403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li  481 (709)
                      ...|..+...+.+.|++++|+..|++...  +.| +...|..+..++...|++++|...|+.+.+.              
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--------------   99 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--------------   99 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------------
Confidence            34555555555555666666666655555  233 2334445555555555555555555554432              


Q ss_pred             HHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873          482 GLLSKAGLLDEAEKFMRSTPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND  539 (709)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  539 (709)
                                           .|+ +..|..+..++...|++++|+..+++++++.|++
T Consensus       100 ---------------------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          100 ---------------------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             ---------------------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             ---------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence                                 232 4555666666666666666666666666666643

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.05  E-value=1.3e-05  Score=68.40  Aligned_cols=93  Identities=5%  Similarity=-0.047  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc-------hhHHHH
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV-------GTYILL  546 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l  546 (709)
                      .+..+...+.+.|++++|++.|++. .+.|+ ...|..+..++...|++++|++.++++++++|++.       .+|..+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            4566777888888888888887643 33454 78888999999999999999999999999887654       367788


Q ss_pred             HHHhhhcCCchhHHHHHHHHHh
Q 039873          547 SNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       547 ~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +.+|...|++++|.+.+++..+
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            8999999999999999998765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.03  E-value=3.7e-05  Score=63.75  Aligned_cols=93  Identities=10%  Similarity=-0.007  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhc
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKE  553 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  553 (709)
                      .+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~   85 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   85 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            4445555555666666666655432 1122 3555666666666666666666666666666666666666666666666


Q ss_pred             CCchhHHHHHHHHHh
Q 039873          554 KRWDGVSKIRKLMKV  568 (709)
Q Consensus       554 g~~~~a~~~~~~m~~  568 (709)
                      |++++|.+.++...+
T Consensus        86 ~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           86 NRFEEAKRTYEEGLK  100 (118)
T ss_dssp             TCHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHH
Confidence            666666666666654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.01  E-value=5e-05  Score=66.16  Aligned_cols=94  Identities=16%  Similarity=-0.005  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039873          475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNM  549 (709)
Q Consensus       475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  549 (709)
                      ..+..+...+.+.|++++|.+.|++. ...|+    ...|..+...+...|++++|+..++++++..|+++..+..++.+
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~  108 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA  108 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence            34444555555555555555555432 23344    34555555555566666666666666666666665566666666


Q ss_pred             hhhcCCchhHHHHHHHHHh
Q 039873          550 YAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       550 ~~~~g~~~~a~~~~~~m~~  568 (709)
                      |...|++++|.+.+++..+
T Consensus       109 ~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          109 LEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            6666666666666665543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.99  E-value=3.7e-05  Score=67.50  Aligned_cols=94  Identities=14%  Similarity=-0.069  Sum_probs=56.9

Q ss_pred             hhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 039873          372 LIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSA  447 (709)
Q Consensus       372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a  447 (709)
                      ...+..+...|.+.|++++|...|++..   ..+...|..+..+|...|++++|++.|++....  .| +...+..+..+
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~   98 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHH
Confidence            3344455556666666666666666543   235556666666666666666666666666653  33 34455556666


Q ss_pred             HhccccHHHHHHHHHHHHHh
Q 039873          448 CGHLGLVQEGFYYLNHLMKQ  467 (709)
Q Consensus       448 ~~~~g~~~~a~~~~~~~~~~  467 (709)
                      +...|++++|...|+...+.
T Consensus        99 ~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            66666666666666666554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.99  E-value=3.8e-05  Score=75.78  Aligned_cols=47  Identities=2%  Similarity=-0.129  Sum_probs=23.9

Q ss_pred             cccHHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 039873          451 LGLVQEGFYYLNHLMKQIGIVPGL-EHYTCIVGLLSKA-GLLDEAEKFMRST  500 (709)
Q Consensus       451 ~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~-g~~~~A~~~~~~~  500 (709)
                      .|+.++|.+.++...   ...|+. .....+...+.+. +.+++|.++|++.
T Consensus       148 ~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          148 AAERERELEECQRNH---EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV  196 (281)
T ss_dssp             HHHHHHHHTTTSGGG---TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhh---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455666665555542   233432 2223333344444 5567777777655

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.99  E-value=0.0001  Score=60.95  Aligned_cols=104  Identities=15%  Similarity=0.012  Sum_probs=57.5

Q ss_pred             HHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 039873          444 VLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQN  521 (709)
Q Consensus       444 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~  521 (709)
                      +...+...|++++|...++.....  .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+
T Consensus        10 ~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   87 (118)
T 1elw_A           10 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   87 (118)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence            333344444444444444444332  1112334444455555555555555554422 1123 36667777777777888


Q ss_pred             chHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039873          522 YGFGRRIAEYILHMDPNDVGTYILLSNM  549 (709)
Q Consensus       522 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~  549 (709)
                      +++|...++++++.+|+++..+..+..+
T Consensus        88 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           88 FEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            8888888888888888776666655544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.97  E-value=0.00011  Score=63.98  Aligned_cols=116  Identities=13%  Similarity=-0.065  Sum_probs=69.3

Q ss_pred             ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHH
Q 039873          402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIV  481 (709)
Q Consensus       402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li  481 (709)
                      +...|..+...+...|++++|++.|++..+  ..|+...                                ....+..+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~--------------------------------~~~~~~~~a   72 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD--------------------------------QAVLHRNRA   72 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHH--------------------------------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchH--------------------------------HHHHHHHHH
Confidence            445555666666666666666666666655  3344200                                023344444


Q ss_pred             HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhh
Q 039873          482 GLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYA  551 (709)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  551 (709)
                      ..|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|++...+..+..+..
T Consensus        73 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           73 ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            4555555555555554421 1123 46667777778888888888888888888888887766666655543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.94  E-value=6.5e-05  Score=63.66  Aligned_cols=105  Identities=11%  Similarity=-0.080  Sum_probs=57.9

Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 039873          443 GVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQ  520 (709)
Q Consensus       443 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g  520 (709)
                      .....+...|++++|...|...++.  .+.+...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++...|
T Consensus         9 ~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~   86 (126)
T 3upv_A            9 LEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK   86 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence            3333444444444444444444332  1112344555555555555555555554422 1223 3666777777777788


Q ss_pred             CchHHHHHHHHHHhcC------CCCchhHHHHHHH
Q 039873          521 NYGFGRRIAEYILHMD------PNDVGTYILLSNM  549 (709)
Q Consensus       521 ~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~  549 (709)
                      ++++|+..++++++++      |.+......+..+
T Consensus        87 ~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~  121 (126)
T 3upv_A           87 EYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  121 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence            8888888888888777      6665555554443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.94  E-value=3.3e-05  Score=67.49  Aligned_cols=63  Identities=11%  Similarity=-0.038  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhc-------CCCCchhH----HHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          506 VVAWHTLLNASRVHQNYGFGRRIAEYILHM-------DPNDVGTY----ILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ...|..+..++...|++++|+..+++++++       +|++...|    ...+.+|...|++++|...|++..+
T Consensus        57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            348888888888899999999999998888       99998899    9999999999999999999999875

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.93  E-value=6.5e-05  Score=79.90  Aligned_cols=161  Identities=11%  Similarity=0.025  Sum_probs=108.5

Q ss_pred             CCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 039873          386 GNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLN  462 (709)
Q Consensus       386 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~  462 (709)
                      +++++|...|+....   .+...|..+...|.+.|++++|+..|++..+.  .|+...+          . -++..+ ..
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~  313 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SE  313 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HH
Confidence            344445544443332   23457777888888888888888888888762  3322100          0 011110 00


Q ss_pred             HHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873          463 HLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV  540 (709)
Q Consensus       463 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  540 (709)
                      ..        ....|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..++++++++|++.
T Consensus       314 ~~--------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~  385 (457)
T 1kt0_A          314 SF--------LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  385 (457)
T ss_dssp             HH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred             HH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            10        1346778888888999999998887743 2334 488889999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhhcCCchhHHH-HHHHHHh
Q 039873          541 GTYILLSNMYAKEKRWDGVSK-IRKLMKV  568 (709)
Q Consensus       541 ~~~~~l~~~~~~~g~~~~a~~-~~~~m~~  568 (709)
                      ..+..+..++.+.|+++++.+ .++.|..
T Consensus       386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          386 AARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998864 5565654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.93  E-value=7.7e-05  Score=66.69  Aligned_cols=106  Identities=11%  Similarity=-0.046  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 039873          440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASR  517 (709)
Q Consensus       440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~  517 (709)
                      .+..+...+...|++++|...|+..++..  +.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+...+.
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44444455555555555555555554421  123455666666666666666666665532 2234 4778888888999


Q ss_pred             hcCCchHHHHHHHHHHhcCCCCchhHHHHH
Q 039873          518 VHQNYGFGRRIAEYILHMDPNDVGTYILLS  547 (709)
Q Consensus       518 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  547 (709)
                      ..|++++|+..++++++++|++...+....
T Consensus        91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  120 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRG  120 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            999999999999999999999887554443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.93  E-value=8e-05  Score=79.56  Aligned_cols=120  Identities=13%  Similarity=-0.008  Sum_probs=79.5

Q ss_pred             HhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 039873          375 GNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGH  450 (709)
Q Consensus       375 ~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~  450 (709)
                      +..+...|.+.|++++|.+.|++..   ..+..+|..+..+|.+.|++++|++.|++..+.  .| +..++..+..++..
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMA   86 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence            3444556777888888888888765   235677888888888888888888888888774  45 35577777777888


Q ss_pred             cccHHHHHHHHHHHHHhhCCCCChHHHHHHHHH--HHhcCCHHHHHHHHH
Q 039873          451 LGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGL--LSKAGLLDEAEKFMR  498 (709)
Q Consensus       451 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~  498 (709)
                      .|++++|.+.|+++.+...-.+  ..+..+..+  +.+.|++++|.+.++
T Consensus        87 ~g~~~eA~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           87 LGKFRAALRDYETVVKVKPHDK--DAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCT--THHHHHHHHHHHHHHHHHCCC-----
T ss_pred             cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            8888888888887766432222  234444443  667777777777766

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.92  E-value=0.00065  Score=68.02  Aligned_cols=178  Identities=10%  Similarity=0.053  Sum_probs=90.3

Q ss_pred             HHHHHHHHhhcCC---CChhhHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH-------
Q 039873          388 IEAANKVFSDMRY---RDIITWNAMICGYSHH-G-LGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQ-------  455 (709)
Q Consensus       388 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~-------  455 (709)
                      ++++++.++.+..   ++..+|+--...+.+. + ++++++++++++.+.. +-|...|..-.....+.|.++       
T Consensus       105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~  183 (349)
T 3q7a_A          105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQW  183 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhH
Confidence            5555555554432   2334454444444443 4 5555555555555421 113334443333333333333       


Q ss_pred             -HHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCc---
Q 039873          456 -EGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGL-------LDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNY---  522 (709)
Q Consensus       456 -~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~---  522 (709)
                       +++++++.+++.  ..-|...|+....++.+.++       ++++++.+++. ...| |...|+-+-..+.+.|+.   
T Consensus       184 ~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~  261 (349)
T 3q7a_A          184 GSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP  261 (349)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc
Confidence             555666655542  12344455555555555554       45565554422 2223 466666655555555443   


Q ss_pred             -----------------hHHHHHHHHHHhcC------CCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          523 -----------------GFGRRIAEYILHMD------PNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       523 -----------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                                       .........+....      +..+.....|+++|...|+.++|.++++.+.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence                             11122222222211      45566777899999999999999999999864

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.92  E-value=7e-05  Score=63.36  Aligned_cols=96  Identities=14%  Similarity=0.013  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhh
Q 039873          474 LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYA  551 (709)
Q Consensus       474 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  551 (709)
                      ...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            456778889999999999999998754 2234 58888899999999999999999999999999999999999999999


Q ss_pred             hcCCchhHHHHHHHHHhC
Q 039873          552 KEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       552 ~~g~~~~a~~~~~~m~~~  569 (709)
                      ..|++++|.+.+++..+.
T Consensus        92 ~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHhc
Confidence            999999999999998764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.92  E-value=6.6e-05  Score=66.96  Aligned_cols=63  Identities=6%  Similarity=0.000  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ...|..+..++...|+++.|+..++++++++|+++..|..++.+|...|++++|...++...+
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            567788888889999999999999999999999999999999999999999999999988875

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.91  E-value=4.6e-05  Score=66.35  Aligned_cols=103  Identities=6%  Similarity=-0.147  Sum_probs=61.0

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 039873          441 FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRV  518 (709)
Q Consensus       441 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~  518 (709)
                      +..+...+...|++++|...|+.....  -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++..
T Consensus        21 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           21 LYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            333444455555555555555555432  1123445555555666666666666655532 1223 35666777777888


Q ss_pred             cCCchHHHHHHHHHHhcCCCCchhHHH
Q 039873          519 HQNYGFGRRIAEYILHMDPNDVGTYIL  545 (709)
Q Consensus       519 ~g~~~~a~~~~~~~~~~~p~~~~~~~~  545 (709)
                      .|++++|+..+++++++.|+++.....
T Consensus        99 ~g~~~~A~~~~~~al~~~p~~~~~~~~  125 (142)
T 2xcb_A           99 LGDLDGAESGFYSARALAAAQPAHEAL  125 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence            888888888888888888877655443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.91  E-value=0.00021  Score=75.35  Aligned_cols=164  Identities=5%  Similarity=-0.148  Sum_probs=114.6

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHhccccHHHHHHHHHHHHHhh---CCCCC-hH
Q 039873          405 TWNAMICGYSHHGLGREALTLFQNMLAA-EERPNHV----TFVGVLSACGHLGLVQEGFYYLNHLMKQI---GIVPG-LE  475 (709)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~  475 (709)
                      ++..+...|...|++++|.+++.++... +-.++..    ..+.+-..+...|..+++..++.......   +..+. ..
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            3567788888888998888888887652 1112221    22223334456688888888887765422   22222 45


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcC---CCC----c
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMRST-------PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMD---PND----V  540 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~  540 (709)
                      .+..|...|...|++++|.+++++.       .-+|. ..++..++..|...|++++|..++++++...   +.+    .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            7788899999999999999887643       11222 5577788889999999999999999987653   222    2


Q ss_pred             hhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          541 GTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       541 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ..+..++..+...|++++|...+....+
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4566778888999999999988877754

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.88  E-value=0.002  Score=64.18  Aligned_cols=192  Identities=8%  Similarity=-0.022  Sum_probs=110.2

Q ss_pred             hhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcC--CHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCC-hHHHHHHH
Q 039873          353 LRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGG--NIEAANKVFSDMR---YRDIITWNAMICGYSHHGL-GREALTLF  426 (709)
Q Consensus       353 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~  426 (709)
                      ++.+..++..++... +-+..+++.-.-.+.+.|  .+++++.+++++.   .+|..+|+--...+...|. .+++++.+
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            345555555555543 344555555555555555  3677777777766   3566677776666677776 47888888


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHhcc--------------ccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc-----
Q 039873          427 QNMLAAEERPNHVTFVGVLSACGHL--------------GLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA-----  487 (709)
Q Consensus       427 ~~m~~~g~~pd~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----  487 (709)
                      +++.+.. +-|...|+.......+.              +.++++++++...+..  .+-|...|+-+-..+.+.     
T Consensus       169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~  245 (331)
T 3dss_A          169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE  245 (331)
T ss_dssp             HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence            8887743 22444555444433333              4567777777776643  233455565555555544     


Q ss_pred             ------CCHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039873          488 ------GLLDEAEKFMRST-PVKWDVVAWHTLLNA-----SRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNM  549 (709)
Q Consensus       488 ------g~~~~A~~~~~~~-~~~pd~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  549 (709)
                            +.++++++.++++ ...||. .|..+..+     ....|..++....+.++.+++|...+-|.-+...
T Consensus       246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~  318 (331)
T 3dss_A          246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  318 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence                  3466666665543 234553 34322221     1134566677777777778887766666555443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.88  E-value=0.0037  Score=62.59  Aligned_cols=222  Identities=15%  Similarity=0.119  Sum_probs=133.3

Q ss_pred             CCHhHHHHHHHHHHhCCCCCCccc-hHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhc-C-CHHHH
Q 039873          316 EYFEEALNLFCGMEYEAIRPNEFT-FAVMLNSAAGLS-ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKG-G-NIEAA  391 (709)
Q Consensus       316 g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~~~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~-g-~~~~A  391 (709)
                      +..++|++++.+++..  .|+..| |+.--..+...+ .++++..+.+.+++.. +-+..+++.-...+.+. + +++++
T Consensus        68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E  144 (349)
T 3q7a_A           68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE  144 (349)
T ss_dssp             CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence            3334455555555442  233222 222222223333 3555555555555443 33444454444444444 5 67788


Q ss_pred             HHHHhhcCC---CChhhHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-------
Q 039873          392 NKVFSDMRY---RDIITWNAMICGYSHHGLGR--------EALTLFQNMLAAEERPNHVTFVGVLSACGHLGL-------  453 (709)
Q Consensus       392 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~-------  453 (709)
                      +++++++.+   +|..+|+--...+.+.|..+        ++++.++++.+.. .-|...|+.-.....+.+.       
T Consensus       145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~  223 (349)
T 3q7a_A          145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS  223 (349)
T ss_dssp             HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence            888888774   45567766555555555555        8999999998853 3356677776666666664       


Q ss_pred             HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH--------------------HHHHHHHHhCCC--------CCC
Q 039873          454 VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLL--------------------DEAEKFMRSTPV--------KWD  505 (709)
Q Consensus       454 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~--------~pd  505 (709)
                      ++++++++..++..  .+-|...|+-+-..+.+.|+.                    .+..++...+..        .+.
T Consensus       224 ~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  301 (349)
T 3q7a_A          224 LQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV  301 (349)
T ss_dssp             HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence            78888888887653  234566777777777777764                    333444333311        256


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHH-hcCCCCchhH
Q 039873          506 VVAWHTLLNASRVHQNYGFGRRIAEYIL-HMDPNDVGTY  543 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~  543 (709)
                      ...+.-|+..|...|+.++|.++++.+. +.+|-....+
T Consensus       302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw  340 (349)
T 3q7a_A          302 PLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW  340 (349)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence            8888899999999999999999999986 6777654433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.86  E-value=9e-05  Score=75.21  Aligned_cols=137  Identities=8%  Similarity=-0.051  Sum_probs=90.1

Q ss_pred             CChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC--CCC----------------hhhHHHHHHH
Q 039873          351 SALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR--YRD----------------IITWNAMICG  412 (709)
Q Consensus       351 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~----------------~~~~~~li~~  412 (709)
                      ++++.|...+....+.. +.+...+..+...|.+.|++++|...|++..  .|+                ...|..+..+
T Consensus       127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            34444444443333221 2346678889999999999999999999876  233                3677777788


Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCH
Q 039873          413 YSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSKAGLL  490 (709)
Q Consensus       413 ~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~  490 (709)
                      |.+.|++++|++.|++..+.  .| +...+..+..++...|++++|...|+.+.+.   .| +...+..+..++.+.|+.
T Consensus       206 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHH
Confidence            88888888888888887773  34 4556667777777777777777777776542   22 234455555555555555


Q ss_pred             HHH
Q 039873          491 DEA  493 (709)
Q Consensus       491 ~~A  493 (709)
                      ++|
T Consensus       281 ~~a  283 (336)
T 1p5q_A          281 LAR  283 (336)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            555

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.84  E-value=1.3e-05  Score=67.10  Aligned_cols=82  Identities=12%  Similarity=0.096  Sum_probs=55.6

Q ss_pred             cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHH
Q 039873          487 AGLLDEAEKFMRST-PV---KWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSK  561 (709)
Q Consensus       487 ~g~~~~A~~~~~~~-~~---~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~  561 (709)
                      .|++++|++.|++. ..   .|+ ...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            45566666665533 22   133 55666777777777888888888888888888777778888888888888888888


Q ss_pred             HHHHHHh
Q 039873          562 IRKLMKV  568 (709)
Q Consensus       562 ~~~~m~~  568 (709)
                      .+++..+
T Consensus        83 ~~~~al~   89 (117)
T 3k9i_A           83 LLLKIIA   89 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.82  E-value=4.1e-05  Score=81.80  Aligned_cols=114  Identities=7%  Similarity=-0.017  Sum_probs=67.0

Q ss_pred             hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHH
Q 039873          449 GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGR  526 (709)
Q Consensus       449 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~  526 (709)
                      ...|++++|.+.++++.+.  .+.+...|..+..+|.+.|++++|++.+++. .+.| +..+|..+..++...|++++|+
T Consensus        17 ~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~   94 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL   94 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            3445555555555555432  1112445555556666666666666655432 2233 3666777777777777777777


Q ss_pred             HHHHHHHhcCCCCchhHHHHHHH--hhhcCCchhHHHHHH
Q 039873          527 RIAEYILHMDPNDVGTYILLSNM--YAKEKRWDGVSKIRK  564 (709)
Q Consensus       527 ~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~  564 (709)
                      +.++++++++|++...+..+..+  +.+.|++++|.+.++
T Consensus        95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            77777777777777777766666  667777777777766

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.80  E-value=0.00019  Score=60.97  Aligned_cols=91  Identities=7%  Similarity=-0.065  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-C----hHHHHH
Q 039873          406 WNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-G----LEHYTC  479 (709)
Q Consensus       406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~----~~~~~~  479 (709)
                      |..+...|.+.|++++|++.|++.++  +.|+ ...|..+..++...|++++|++.++..++...-.+ +    ...|..
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            33344444444444444444444444  2232 23344444444444444444444444433111000 0    123444


Q ss_pred             HHHHHHhcCCHHHHHHHHH
Q 039873          480 IVGLLSKAGLLDEAEKFMR  498 (709)
Q Consensus       480 li~~~~~~g~~~~A~~~~~  498 (709)
                      +...|...|++++|++.|+
T Consensus        89 lg~~~~~~~~~~~A~~~~~  107 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFH  107 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHH
Confidence            4455555555555555544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.79  E-value=7.6e-05  Score=63.35  Aligned_cols=89  Identities=15%  Similarity=0.070  Sum_probs=61.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC---chhHHHHHHHhh
Q 039873          480 IVGLLSKAGLLDEAEKFMRST-PVKWD-V---VAWHTLLNASRVHQNYGFGRRIAEYILHMDPND---VGTYILLSNMYA  551 (709)
Q Consensus       480 li~~~~~~g~~~~A~~~~~~~-~~~pd-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~  551 (709)
                      +...+.+.|++++|.+.|+.. ...|+ .   ..|..+...+...|++++|...++++++..|++   +..+..++.+|.
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence            445566667777777666543 11232 2   466666677777888888888888888887777   666777888888


Q ss_pred             hcCCchhHHHHHHHHHh
Q 039873          552 KEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       552 ~~g~~~~a~~~~~~m~~  568 (709)
                      ..|++++|...++.+.+
T Consensus        88 ~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            88888888888877765

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.79  E-value=0.00011  Score=62.99  Aligned_cols=99  Identities=10%  Similarity=-0.141  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 039873          438 HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNA  515 (709)
Q Consensus       438 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~  515 (709)
                      ...+..+...+...|++++|...|...+...  +.+...+..+..+|.+.|++++|.+.+++. ...| +...|..+...
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            3444445555555555555555555544321  122445555555666666666666555432 1223 36677777777


Q ss_pred             HHhcCCchHHHHHHHHHHhcCCC
Q 039873          516 SRVHQNYGFGRRIAEYILHMDPN  538 (709)
Q Consensus       516 ~~~~g~~~~a~~~~~~~~~~~p~  538 (709)
                      +...|+++.|+..+++++++.|+
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHChh
Confidence            77788888888888888777765

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.77  E-value=8.9e-05  Score=62.77  Aligned_cols=95  Identities=13%  Similarity=0.089  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-------chhHHH
Q 039873          475 EHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND-------VGTYIL  545 (709)
Q Consensus       475 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~  545 (709)
                      ..+..+...+...|++++|...+++. ...| +...|..+...+...|+++.|...++++++..|++       ...+..
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            35666777778888888888877643 1223 57778888888889999999999999999887765       778899


Q ss_pred             HHHHhhhcCCchhHHHHHHHHHhC
Q 039873          546 LSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       546 l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      ++.+|...|++++|.+.++...+.
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh
Confidence            999999999999999999998763

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.75  E-value=4.3e-05  Score=70.84  Aligned_cols=145  Identities=11%  Similarity=-0.011  Sum_probs=76.8

Q ss_pred             HHHHHhcCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCC-CC--------------hhh
Q 039873          177 VELYTKCLDVEMAKRLLDLLPGY---DVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVR-WD--------------SVT  238 (709)
Q Consensus       177 i~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~--------------~~t  238 (709)
                      +......|+++.|.+.++.-...   ....|..+...+.+.|++++|+..|.+..+.... |+              ...
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~   90 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC   90 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence            33444556666666666543321   3445777788888999999999999988764221 11              134


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHc
Q 039873          239 YVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQN  315 (709)
Q Consensus       239 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~  315 (709)
                      +..+..++...|++++|...+..+++.. +.+...+..+..+|...|++++|...|++..+   .+...+..+...+...
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            5555555556666666666666665553 33455555555666666666666666655432   2344555555555554


Q ss_pred             CCHhHHH
Q 039873          316 EYFEEAL  322 (709)
Q Consensus       316 g~~~~A~  322 (709)
                      ++.+++.
T Consensus       170 ~~~~~~~  176 (198)
T 2fbn_A          170 KEARKKD  176 (198)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHH
Confidence            4444444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.74  E-value=0.0029  Score=63.04  Aligned_cols=178  Identities=11%  Similarity=0.047  Sum_probs=128.8

Q ss_pred             HHHHHHHHhhcC---CCChhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-HHHHHHHH
Q 039873          388 IEAANKVFSDMR---YRDIITWNAMICGYSHHGL--GREALTLFQNMLAAEERPNHVTFVGVLSACGHLGL-VQEGFYYL  461 (709)
Q Consensus       388 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~  461 (709)
                      +++++.+++.+.   .++..+|+--...+...|+  +++++++++++.+.. +-|...|+.-.......|. ++++++++
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            567777777765   3577889888888888884  899999999999853 3356677776666777787 68999999


Q ss_pred             HHHHHhhCCCCChHHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 039873          462 NHLMKQIGIVPGLEHYTCIVGLLSKA--------------GLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVH------  519 (709)
Q Consensus       462 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~------  519 (709)
                      ..+++.  ..-|...|+....++.+.              +.++++++.+++. ...| |...|+-+-..+...      
T Consensus       169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~  246 (331)
T 3dss_A          169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL  246 (331)
T ss_dssp             HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred             HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence            999874  244566777666666655              4578888887643 2344 588887665555444      


Q ss_pred             -----CCchHHHHHHHHHHhcCCCCchhHHHHHHH---hhhcCCchhHHHHHHHHHh
Q 039873          520 -----QNYGFGRRIAEYILHMDPNDVGTYILLSNM---YAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       520 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~  568 (709)
                           +.++++++.++++++++|++.-.+..++..   ....|..++....+.++.+
T Consensus       247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence                 457899999999999999986555444332   2346777888888888875

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.73  E-value=0.00022  Score=62.80  Aligned_cols=135  Identities=13%  Similarity=0.057  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHH
Q 039873          405 TWNAMICGYSHHGLGREALTLFQNMLAAEER-PNH----VTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTC  479 (709)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~  479 (709)
                      ++..+...|...|++++|++.+++..+..-. ++.    .++..+...+...|++++|...++...+...          
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------   80 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR----------   80 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------
Confidence            5566666666777777777777666542100 110    1333444444445555555554444332110          


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC------CCchhHHHHHHHhhh
Q 039873          480 IVGLLSKAGLLDEAEKFMRSTPVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDP------NDVGTYILLSNMYAK  552 (709)
Q Consensus       480 li~~~~~~g~~~~A~~~~~~~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~  552 (709)
                                         ..+..+ ...++..+...+...|++++|...++++++..+      .....+..++.+|..
T Consensus        81 -------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~  141 (164)
T 3ro3_A           81 -------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA  141 (164)
T ss_dssp             -------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -------------------HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence                               111000 133455566666677777777777777665421      123467788888889


Q ss_pred             cCCchhHHHHHHHHHh
Q 039873          553 EKRWDGVSKIRKLMKV  568 (709)
Q Consensus       553 ~g~~~~a~~~~~~m~~  568 (709)
                      .|++++|.+.+++..+
T Consensus       142 ~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          142 LGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHH
Confidence            9999999888887764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.72  E-value=0.0003  Score=57.43  Aligned_cols=90  Identities=11%  Similarity=-0.028  Sum_probs=44.1

Q ss_pred             hHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 039873          373 IVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERP---NHVTFVGVLS  446 (709)
Q Consensus       373 ~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~  446 (709)
                      .++..+...|.+.|++++|...|++..   ..+...|..+...|...|++++|++.|++..+.  .|   +...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHHH
Confidence            334444445555555555555554433   123344555555555555555555555555542  22   2334444444


Q ss_pred             HHhcc-ccHHHHHHHHHHH
Q 039873          447 ACGHL-GLVQEGFYYLNHL  464 (709)
Q Consensus       447 a~~~~-g~~~~a~~~~~~~  464 (709)
                      .+... |++++|.+.+...
T Consensus        85 ~~~~~~~~~~~A~~~~~~~  103 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARA  103 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHH
Confidence            55555 5555555555544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.00071  Score=71.15  Aligned_cols=117  Identities=9%  Similarity=-0.080  Sum_probs=72.7

Q ss_pred             HHhcCCHHHHHHHHhhcCC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CC--CCC-HHHHHHHHHH
Q 039873          382 YAKGGNIEAANKVFSDMRY-----R----DIITWNAMICGYSHHGLGREALTLFQNMLAA--EE--RPN-HVTFVGVLSA  447 (709)
Q Consensus       382 y~~~g~~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~pd-~~t~~~ll~a  447 (709)
                      +...|+.+.|..++.....     .    -..++..+...|...|++++|..++++....  +.  +|. ..++..+...
T Consensus       105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (434)
T 4b4t_Q          105 EQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKV  184 (434)
T ss_dssp             CSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence            3344556666655554431     1    1235666777788888888888887776542  11  222 2366677778


Q ss_pred             HhccccHHHHHHHHHHHHHhhCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHH
Q 039873          448 CGHLGLVQEGFYYLNHLMKQIGIVPG-----LEHYTCIVGLLSKAGLLDEAEKFMR  498 (709)
Q Consensus       448 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~  498 (709)
                      |...|++++|..+++.......-.++     ...+..+...+...|++++|...|.
T Consensus       185 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~  240 (434)
T 4b4t_Q          185 YHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF  240 (434)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            88888888888888776543221221     2456667777778888888877643

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.70  E-value=0.00024  Score=75.47  Aligned_cols=124  Identities=11%  Similarity=-0.005  Sum_probs=89.5

Q ss_pred             HhccccHHHHHHHHHHHHHhhCC--CC---C-hHHHHHHHHHHHhcCCHHHHHHHHHhC--------C-CCCC-HHHHHH
Q 039873          448 CGHLGLVQEGFYYLNHLMKQIGI--VP---G-LEHYTCIVGLLSKAGLLDEAEKFMRST--------P-VKWD-VVAWHT  511 (709)
Q Consensus       448 ~~~~g~~~~a~~~~~~~~~~~~~--~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~~--------~-~~pd-~~~~~~  511 (709)
                      +...|++++|..+++.......-  .|   + ..+++.|..+|...|++++|+.++++.        + ..|+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            44567777777777666543221  12   1 346777777888888888887775532        2 2344 667888


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHh-----cCCCCchh---HHHHHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873          512 LLNASRVHQNYGFGRRIAEYILH-----MDPNDVGT---YILLSNMYAKEKRWDGVSKIRKLMKVRKV  571 (709)
Q Consensus       512 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  571 (709)
                      |...|...|++++|+.+++++++     ++|+.+.+   ...|...+...|++++|..++.++++...
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~  466 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL  466 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88899999999999999999876     46766543   45777888899999999999999987543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.70  E-value=0.00027  Score=62.20  Aligned_cols=95  Identities=14%  Similarity=0.011  Sum_probs=69.9

Q ss_pred             hhHHhHHHhHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----
Q 039873          372 LIVGNALINMYAKGGNIEAANKVFSDMRY-----RD----IITWNAMICGYSHHGLGREALTLFQNMLAAEE-RPN----  437 (709)
Q Consensus       372 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----  437 (709)
                      ..++..+...|...|++++|...|++..+     .+    ..++..+...|...|++++|++.+++.....- .++    
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            45678888999999999999999988763     22    14788899999999999999999999875210 111    


Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873          438 HVTFVGVLSACGHLGLVQEGFYYLNHLMK  466 (709)
Q Consensus       438 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  466 (709)
                      ...+..+...+...|++++|...++...+
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  117 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA  117 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            23455556666777777777777766543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.68  E-value=0.00044  Score=58.33  Aligned_cols=114  Identities=8%  Similarity=-0.100  Sum_probs=65.0

Q ss_pred             hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 039873          404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGL  483 (709)
Q Consensus       404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~  483 (709)
                      ..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++.+.....-.            
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------------   71 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN------------   71 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS------------
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc------------
Confidence            355666666667777777777777766632 2234455555556666666666666666554421110            


Q ss_pred             HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh
Q 039873          484 LSKAGLLDEAEKFMRSTPVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY  550 (709)
Q Consensus       484 ~~~~g~~~~A~~~~~~~~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  550 (709)
                                         .++    ..+|..+...+...|+++.|...++++++..| ++.....+..++
T Consensus        72 -------------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~  122 (131)
T 1elr_A           72 -------------------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE  122 (131)
T ss_dssp             -------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred             -------------------chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence                               111    44555566666666777777777777776666 344444444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.65  E-value=0.00021  Score=62.41  Aligned_cols=69  Identities=13%  Similarity=-0.039  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHh--------CCCCCC-HHHH----HHHHHHHHhcCCchHHHHHHHHHHhcCCCCchh
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMRS--------TPVKWD-VVAW----HTLLNASRVHQNYGFGRRIAEYILHMDPNDVGT  542 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~~--------~~~~pd-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  542 (709)
                      .|..+..++.+.|++++|+..+++        ..+.|| ...|    .....++...|++++|+..|+++++++|++...
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            455555555556665555555432        234777 6788    889999999999999999999999999988765


Q ss_pred             HH
Q 039873          543 YI  544 (709)
Q Consensus       543 ~~  544 (709)
                      +.
T Consensus       139 ~~  140 (159)
T 2hr2_A          139 TP  140 (159)
T ss_dssp             CT
T ss_pred             HH
Confidence            43

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.65  E-value=0.00026  Score=72.78  Aligned_cols=137  Identities=12%  Similarity=-0.034  Sum_probs=102.5

Q ss_pred             hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHH
Q 039873          403 IITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIV  481 (709)
Q Consensus       403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li  481 (709)
                      ...|..+...|.+.|++++|++.|++..+.  .|+..          .....+++.          ...| +...|..+.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla  280 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIG  280 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHH
Confidence            346777888888889999999888887662  11100          000111111          1112 245788888


Q ss_pred             HHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhH
Q 039873          482 GLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGV  559 (709)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  559 (709)
                      .+|.+.|++++|++.+++. ...|+ ...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++
T Consensus       281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998743 44554 788888999999999999999999999999999999999999999988888777


Q ss_pred             HH
Q 039873          560 SK  561 (709)
Q Consensus       560 ~~  561 (709)
                      .+
T Consensus       361 ~k  362 (370)
T 1ihg_A          361 EK  362 (370)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.64  E-value=0.00018  Score=60.46  Aligned_cols=91  Identities=10%  Similarity=-0.045  Sum_probs=44.6

Q ss_pred             HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchH
Q 039873          447 ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGF  524 (709)
Q Consensus       447 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~  524 (709)
                      .+.+.|++++|...|+..++.  .+.+...|..+..++.+.|++++|+..+++. .+.| +...|..+...+...|++++
T Consensus        26 ~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~  103 (121)
T 1hxi_A           26 SMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA  103 (121)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            344444444444444444332  1112334444445555555555555554422 1233 35566666666777777777


Q ss_pred             HHHHHHHHHhcCCCC
Q 039873          525 GRRIAEYILHMDPND  539 (709)
Q Consensus       525 a~~~~~~~~~~~p~~  539 (709)
                      |+..++++++.+|++
T Consensus       104 A~~~~~~al~~~P~~  118 (121)
T 1hxi_A          104 ALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHC-----
T ss_pred             HHHHHHHHHHhCcCC
Confidence            777777777776654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.61  E-value=3e-05  Score=63.83  Aligned_cols=93  Identities=13%  Similarity=-0.062  Sum_probs=73.9

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC------chhHH
Q 039873          473 GLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND------VGTYI  544 (709)
Q Consensus       473 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~  544 (709)
                      +...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++      ...+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            3456677778888888888888887643 2234 57888889999999999999999999999999988      77788


Q ss_pred             HHHHHhhhcCCchhHHHHHHH
Q 039873          545 LLSNMYAKEKRWDGVSKIRKL  565 (709)
Q Consensus       545 ~l~~~~~~~g~~~~a~~~~~~  565 (709)
                      .++.++...|++++|.+.++.
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            888888888888777655543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.61  E-value=0.0025  Score=69.26  Aligned_cols=170  Identities=13%  Similarity=0.077  Sum_probs=134.5

Q ss_pred             cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 039873          385 GGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGL----------GREALTLFQNMLAAEERP-NHVTFVGVLSACGH  450 (709)
Q Consensus       385 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~  450 (709)
                      ...-++|.+.++++..   .+...|+.--..+...|+          ++++++.++++.+.  .| +..+|..-...+.+
T Consensus        42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence            3445677888887763   355678877667777676          89999999999984  45 55688887788888


Q ss_pred             cc--cHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 039873          451 LG--LVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAG-LLDEAEKFMRST-PVKW-DVVAWHTLLNASRVH------  519 (709)
Q Consensus       451 ~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~------  519 (709)
                      .+  +++++.+.++.+.+.  -.-+...|+.-..++.+.| .++++++.++++ ...| |..+|+.....+...      
T Consensus       120 l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          120 LPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             cccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence            88  779999999999874  2345667888788888889 899999998765 3344 588898887776653      


Q ss_pred             --------CCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchh
Q 039873          520 --------QNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDG  558 (709)
Q Consensus       520 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  558 (709)
                              +.++++.+.++++++++|++..+|.-+..++.+.|+.++
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                    457899999999999999999999999999999998665

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.58  E-value=0.0009  Score=56.45  Aligned_cols=69  Identities=7%  Similarity=-0.113  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHH
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMRST-PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYI  544 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  544 (709)
                      .+..+...|.+.|++++|.+.+++. ...|+    ...+..+...+...|++++|...++++++..|+++....
T Consensus        41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  114 (129)
T 2xev_A           41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV  114 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence            3444445555555555555554432 11122    445566666777778888888888888887777654433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.58  E-value=0.00017  Score=73.17  Aligned_cols=147  Identities=13%  Similarity=-0.046  Sum_probs=82.6

Q ss_pred             hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 039873          404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGL  483 (709)
Q Consensus       404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~  483 (709)
                      ..|..+...+.+.|++++|+..|++...  +.|+...       +...|..+++...+.           ...|..+..+
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~  239 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence            4566777788889999999999999877  4565442       234455555443221           1267788889


Q ss_pred             HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh-hhcCCchhHH
Q 039873          484 LSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY-AKEKRWDGVS  560 (709)
Q Consensus       484 ~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~  560 (709)
                      |.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..++++++++|++...+..|..+. ...+..+++.
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999887743 2334 4788888889999999999999999999999999888888888874 4557778888


Q ss_pred             HHHHHHHhCC
Q 039873          561 KIRKLMKVRK  570 (709)
Q Consensus       561 ~~~~~m~~~~  570 (709)
                      +.++.|....
T Consensus       320 ~~~~~~l~~~  329 (338)
T 2if4_A          320 EMYKGIFKGK  329 (338)
T ss_dssp             ----------
T ss_pred             HHHHHhhCCC
Confidence            8888887543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.56  E-value=0.00023  Score=63.30  Aligned_cols=120  Identities=13%  Similarity=0.044  Sum_probs=79.5

Q ss_pred             hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHH
Q 039873          403 IITWNAMICGYSHHGLGREALTLFQNMLAAE------ERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEH  476 (709)
Q Consensus       403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~  476 (709)
                      ...|......+.+.|++++|+..|++....-      -.|+...+                    ..+     .+.+...
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~-----~~~~~~~   65 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL-----DRKNIPL   65 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH-----HHTHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH-----HHHHHHH
Confidence            3456666677777777777777777765520      01110000                    000     0112346


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc-hhHHHHH
Q 039873          477 YTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV-GTYILLS  547 (709)
Q Consensus       477 ~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~  547 (709)
                      |..+..+|.+.|++++|+..++.. .+.|+ ...|..+..++...|++++|...++++++++|++. .....+.
T Consensus        66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~  139 (162)
T 3rkv_A           66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK  139 (162)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            777888888888888888887643 23444 78888899999999999999999999999999887 3343443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.55  E-value=0.00027  Score=57.03  Aligned_cols=64  Identities=23%  Similarity=0.249  Sum_probs=60.4

Q ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          505 DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       505 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4788999999999999999999999999999999999999999999999999999999998875

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.54  E-value=0.00016  Score=73.47  Aligned_cols=113  Identities=5%  Similarity=-0.092  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039873          440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVH  519 (709)
Q Consensus       440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~  519 (709)
                      .+..+...+.+.|++++|...|...+..   .|+..       .+...|+.+++...+.       ...|..+..++...
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~  243 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL  243 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence            3555667788899999999999987653   34322       1233445555554432       13788888899999


Q ss_pred             CCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          520 QNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       520 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      |++++|+..++++++++|++...|..++.+|...|++++|.+.+++..+.
T Consensus       244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.52  E-value=7.8e-05  Score=62.28  Aligned_cols=91  Identities=15%  Similarity=0.075  Sum_probs=54.0

Q ss_pred             cccHHHHHHHHHHHHHhhC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHH
Q 039873          451 LGLVQEGFYYLNHLMKQIG--IVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGR  526 (709)
Q Consensus       451 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~  526 (709)
                      .|++++|...|+..++. +  -+.+...+..+..+|.+.|++++|.+.|++. ...|+ ...+..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            34555555555555331 1  0112345556666666666666666666532 22333 667777777888888888888


Q ss_pred             HHHHHHHhcCCCCchh
Q 039873          527 RIAEYILHMDPNDVGT  542 (709)
Q Consensus       527 ~~~~~~~~~~p~~~~~  542 (709)
                      ..++++++..|+++..
T Consensus        82 ~~~~~al~~~p~~~~~   97 (117)
T 3k9i_A           82 ELLLKIIAETSDDETI   97 (117)
T ss_dssp             HHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHhCCCcHHH
Confidence            8888888888877543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.44  E-value=0.00067  Score=69.65  Aligned_cols=113  Identities=8%  Similarity=-0.021  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 039873          438 HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKW-DVVAWHTLLNAS  516 (709)
Q Consensus       438 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-d~~~~~~ll~~~  516 (709)
                      ...+..+...+.+.|++++|...|+..++...   ..          ......+++.+      ..| +..+|..+...+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~---~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~  283 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE---GS----------RAAAEDADGAK------LQPVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh---cC----------ccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence            34566666677777888888777777654210   00          00011111111      122 367888889999


Q ss_pred             HhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          517 RVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       517 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      .+.|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus       284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998763

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.41  E-value=0.00035  Score=57.88  Aligned_cols=64  Identities=13%  Similarity=0.101  Sum_probs=58.5

Q ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          505 DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       505 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +...|..+...+...|++++|+..++++++++|++...+..++.+|...|++++|...+++..+
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4788888888999999999999999999999999999999999999999999999999998875

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.38  E-value=0.00078  Score=52.65  Aligned_cols=81  Identities=23%  Similarity=0.254  Sum_probs=62.5

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhh
Q 039873          474 LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYA  551 (709)
Q Consensus       474 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  551 (709)
                      ...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|.++..+..++.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            345666777777788888888776643 2233 47778888888889999999999999999999998888888888876


Q ss_pred             hcC
Q 039873          552 KEK  554 (709)
Q Consensus       552 ~~g  554 (709)
                      ..|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.35  E-value=0.0018  Score=68.73  Aligned_cols=64  Identities=8%  Similarity=-0.022  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      ...|..+..++.+.|++++|+..++++++++|+++..|..++.+|...|++++|...+++..+.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l  380 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  380 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            5778888999999999999999999999999999999999999999999999999999999864

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.34  E-value=0.00013  Score=63.66  Aligned_cols=64  Identities=11%  Similarity=-0.033  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHhcCC----------chHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC-----------CchhHHHHHH
Q 039873          506 VVAWHTLLNASRVHQN----------YGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK-----------RWDGVSKIRK  564 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~  564 (709)
                      ...|..+..++...++          +++|+..++++++++|++..+|..++++|...|           ++++|.+.|+
T Consensus        36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~  115 (158)
T 1zu2_A           36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ  115 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHH
Confidence            4455444444444443          579999999999999999999999999999875           8999999999


Q ss_pred             HHHhC
Q 039873          565 LMKVR  569 (709)
Q Consensus       565 ~m~~~  569 (709)
                      +..+.
T Consensus       116 kAl~l  120 (158)
T 1zu2_A          116 QAVDE  120 (158)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99874

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.22  E-value=0.0019  Score=51.01  Aligned_cols=68  Identities=10%  Similarity=-0.003  Sum_probs=60.2

Q ss_pred             CCHHHHHHHHHHHHhcCC---chHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873          504 WDVVAWHTLLNASRVHQN---YGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKV  571 (709)
Q Consensus       504 pd~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  571 (709)
                      +|+..|..+..++...++   .++|..+++++++++|+++.....++..+...|++++|...|+.+.+...
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            467788888887765554   79999999999999999999999999999999999999999999987654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.0012  Score=53.88  Aligned_cols=65  Identities=8%  Similarity=-0.065  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          505 DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       505 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            56678888899999999999999999999999999999999999999999999999999999864

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.12  E-value=0.00076  Score=71.60  Aligned_cols=114  Identities=10%  Similarity=0.010  Sum_probs=84.3

Q ss_pred             HHHhcCCHHHHHHHHHhC--------C-CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----CCCCc---hhHH
Q 039873          483 LLSKAGLLDEAEKFMRST--------P-VKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHM-----DPNDV---GTYI  544 (709)
Q Consensus       483 ~~~~~g~~~~A~~~~~~~--------~-~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~  544 (709)
                      .+...|++++|+.++++.        + ..|+ ..+++.|...|...|++++|+.++++++++     +|+++   .+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            456789999999886532        1 2333 667889999999999999999999998873     45544   4688


Q ss_pred             HHHHHhhhcCCchhHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHh
Q 039873          545 LLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIK  614 (709)
Q Consensus       545 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~  614 (709)
                      .|+.+|..+|++++|..++++..+--.+ .                - ...||...++...+.+...+++
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~----------------l-G~~Hp~~~~~~~~l~~~~~e~~  449 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLV-T----------------H-GPSHPITKDLEAMRMQTEMELR  449 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHH-H----------------T-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHH-H----------------h-CCCChHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998752110 0                1 1368988877666655554443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.07  E-value=0.0016  Score=68.03  Aligned_cols=116  Identities=7%  Similarity=-0.063  Sum_probs=83.4

Q ss_pred             HHHHHhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----CCCCc---hh
Q 039873          481 VGLLSKAGLLDEAEKFMRST------PVKWD----VVAWHTLLNASRVHQNYGFGRRIAEYILHM-----DPNDV---GT  542 (709)
Q Consensus       481 i~~~~~~g~~~~A~~~~~~~------~~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~  542 (709)
                      +.-+.+.|++++|++++++.      -+.|+    ..+++.|..+|...|++++|+.++++++++     +|+++   .+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            33455667777777776532      11232    557788888898999999999999988763     44443   46


Q ss_pred             HHHHHHHhhhcCCchhHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHh
Q 039873          543 YILLSNMYAKEKRWDGVSKIRKLMKVRKVKKEPGSSWTEIRNTTHVFISGDSNHPESSQIYEKVRELSAKIK  614 (709)
Q Consensus       543 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~  614 (709)
                      |..|+.+|..+|++++|..++++..+--. +                 .-...||...+++..+.+...+|+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence            78999999999999999999998875211 0                 011469999988888888887775

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.97  E-value=0.0062  Score=52.29  Aligned_cols=50  Identities=8%  Similarity=-0.076  Sum_probs=28.1

Q ss_pred             cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh----cCCchhHHHHHHHHHhCC
Q 039873          519 HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK----EKRWDGVSKIRKLMKVRK  570 (709)
Q Consensus       519 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~  570 (709)
                      .+|.++|.+.++++.+.+  ++..+..|+.+|..    .+++++|.+.+++..+.|
T Consensus        74 ~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           74 KKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            445555555555555542  34555566666655    566666666666655544

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.92  E-value=0.00036  Score=70.91  Aligned_cols=434  Identities=10%  Similarity=0.036  Sum_probs=263.2

Q ss_pred             CchhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 039873           66 ENVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSC  145 (709)
Q Consensus        66 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~  145 (709)
                      ..+.+|+.|..++.+.+++.+|.+.|-+  ..|...|..+|.+..+.|.+++-+..+.-.+ +..-  ++..=+.++-++
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaR-k~~k--e~~IDteLi~ay  126 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKAR--ESYVETELIFAL  126 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTS-TTCC--STTTTHHHHHHH
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhc--ccccHHHHHHHH
Confidence            3567888888888888888888877643  4566778888999999999998888877555 3322  444456788888


Q ss_pred             hcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC------------------------CCc
Q 039873          146 SRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPG------------------------YDV  201 (709)
Q Consensus       146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------------------~~~  201 (709)
                      ++.+++.+-+++..       .|+..-.....+-+...|.++.|.-+|..+..                        .++
T Consensus       127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~  199 (624)
T 3lvg_A          127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST  199 (624)
T ss_dssp             HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred             HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence            88887765443322       35554455566666677777777777776641                        477


Q ss_pred             ccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 039873          202 FEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMY  281 (709)
Q Consensus       202 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y  281 (709)
                      .+|-.+-.+|+..+.+.-|.-.--.+.-   .||  -...++.-|-..|.+++-..+++..+... .....+++-|.-.|
T Consensus       200 ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY  273 (624)
T 3lvg_A          200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY  273 (624)
T ss_dssp             CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence            8899999999999998887766555542   222  23345566788888888888887766322 34677888888889


Q ss_pred             HhcCChHHHHHHHHhccC----C-------CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhcc
Q 039873          282 GKCGKFSNAKKVFEGLET----R-------NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGL  350 (709)
Q Consensus       282 ~~~g~~~~A~~~~~~m~~----~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~  350 (709)
                      +|- +.++-.+-++..-.    |       ....|.-++-.|.+-.+++.|...   |.+.  .|+...-..+.....+.
T Consensus       274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KV  347 (624)
T 3lvg_A          274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKV  347 (624)
T ss_dssp             HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGC
T ss_pred             Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHc
Confidence            886 44444444443222    1       345799999999999999877643   2221  12222222223333344


Q ss_pred             CChhHHHHHHHHHHHhCCCCChhHHhH-------------HHhHHHhcCCHHHHHHHHhhcCCCChhhHH-HHHHHHHHc
Q 039873          351 SALRHGDLLHAHIEKSGFKEHLIVGNA-------------LINMYAKGGNIEAANKVFSDMRYRDIITWN-AMICGYSHH  416 (709)
Q Consensus       351 ~~~~~a~~i~~~~~~~g~~~~~~~~~~-------------li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~  416 (709)
                      ++.+.--+....-++    -.+...+-             .++++.+.|++.-....+......|...-| ++-..|...
T Consensus       348 aN~EiyYKAi~FYL~----e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEE  423 (624)
T 3lvg_A          348 ANVELYYRAIQFYLE----FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITE  423 (624)
T ss_dssp             SCSHHHHHHHHHHTT----SCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHH----hChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence            444332222222211    11222222             344555555555555555555555544333 444555555


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 039873          417 GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKF  496 (709)
Q Consensus       417 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  496 (709)
                      .+++.                   +..-+.+|-+-..+.-|.++     ++   .+-.+.-..-...|.+.++|+++.++
T Consensus       424 EDy~~-------------------LR~SId~ydNFD~i~LA~rL-----Ek---HeL~eFRrIAA~LYkkn~rw~qsi~l  476 (624)
T 3lvg_A          424 EDYQA-------------------LRTSIDAYDNFDNISLAQRL-----EK---HELIEFRRIAAYLFKGNNRWKQSVEL  476 (624)
T ss_dssp             TCCHH-------------------HHHTTSSCCCSCTTHHHHHH-----HT---CSSHHHHHHHHHHHHTTCHHHHHSSC
T ss_pred             hhHHH-------------------HHHHHHHhccccHHHHHHHH-----hh---CchHHHHHHHHHHHHhcccHHHHHHH
Confidence            55432                   22222223333333333211     11   12222333445678899999999988


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHH
Q 039873          497 MRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKI  562 (709)
Q Consensus       497 ~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  562 (709)
                      .++-.+=.|      .|...+..|+.+.++++++-..+.+  +...|...+-.|...=+.+-+.++
T Consensus       477 ~KkDklykD------AietAa~S~~~elaeeLL~yFv~~g--~~EcF~a~LytCYdLlrpDvVlEl  534 (624)
T 3lvg_A          477 CKKDSLYKD------AMQYASESKDTELAEELLQWFLQEE--KRECFGACLFTCYDLLRPDVVLET  534 (624)
T ss_dssp             SSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHC--STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred             HHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHcC--chHHHHHHHHHHhhccChHHHHHH
Confidence            654433222      2344567899999999999988876  345777777777777777766654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.89  E-value=0.0026  Score=49.51  Aligned_cols=64  Identities=23%  Similarity=0.284  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      ...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            5678888889999999999999999999999999999999999999999999999999998763

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.84  E-value=0.0012  Score=57.35  Aligned_cols=123  Identities=13%  Similarity=0.116  Sum_probs=66.5

Q ss_pred             HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHH----------HHHHHHHHHHHhhCCCCC-hHHHHHHH
Q 039873          414 SHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQ----------EGFYYLNHLMKQIGIVPG-LEHYTCIV  481 (709)
Q Consensus       414 ~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~----------~a~~~~~~~~~~~~~~p~-~~~~~~li  481 (709)
                      .+.+++++|++.+++..+.  .| +...|..+..++...+.++          +|+..|++.++   +.|+ ...|..+.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG   87 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG   87 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence            4556677777777777763  44 4456666666666665543          44444444433   1222 23344444


Q ss_pred             HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHH
Q 039873          482 GLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSK  561 (709)
Q Consensus       482 ~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~  561 (709)
                      .+|...|++            .|+..         ...|++++|++.|+++++++|++. .|...+.+      .++|.+
T Consensus        88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~------~~ka~e  139 (158)
T 1zu2_A           88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM------TAKAPQ  139 (158)
T ss_dssp             HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH------HHTHHH
T ss_pred             HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH------HHhCHh
Confidence            444333322            22210         012589999999999999999874 33332222      244555


Q ss_pred             HHHHHHhC
Q 039873          562 IRKLMKVR  569 (709)
Q Consensus       562 ~~~~m~~~  569 (709)
                      ++-.....
T Consensus       140 l~~~~~~~  147 (158)
T 1zu2_A          140 LHAEAYKQ  147 (158)
T ss_dssp             HHHHHHHS
T ss_pred             ccCccccc
Confidence            55544443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.75  E-value=0.0067  Score=48.57  Aligned_cols=63  Identities=17%  Similarity=0.179  Sum_probs=36.5

Q ss_pred             ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873          402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMK  466 (709)
Q Consensus       402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  466 (709)
                      +...|..+...|.+.|++++|++.|++..+.  .| +...|..+..++...|++++|.+.++..++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3445556666666666666666666666553  23 234555555666666666666666665544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.73  E-value=0.022  Score=61.85  Aligned_cols=149  Identities=9%  Similarity=0.050  Sum_probs=117.3

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcccc----------HHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873          416 HGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGL----------VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL  484 (709)
Q Consensus       416 ~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  484 (709)
                      ....++|++.++++..  +.|+.. .|+.--.++.+.|.          ++++.+.++.+.+.  .+-+...|..-..++
T Consensus        42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l  117 (567)
T 1dce_A           42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL  117 (567)
T ss_dssp             TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            3445789999999999  567654 45554555555666          89999999999874  234566788778888


Q ss_pred             HhcC--CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC-CchHHHHHHHHHHhcCCCCchhHHHHHHHhhhc------
Q 039873          485 SKAG--LLDEAEKFMRST-PVK-WDVVAWHTLLNASRVHQ-NYGFGRRIAEYILHMDPNDVGTYILLSNMYAKE------  553 (709)
Q Consensus       485 ~~~g--~~~~A~~~~~~~-~~~-pd~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------  553 (709)
                      .+.|  ++++|++.++++ ... .|..+|+.-.......| .++++.+.++++++.+|.|..+|.....++.+.      
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence            8999  779999998865 222 36889999888888888 899999999999999999999999888888774      


Q ss_pred             --------CCchhHHHHHHHHHh
Q 039873          554 --------KRWDGVSKIRKLMKV  568 (709)
Q Consensus       554 --------g~~~~a~~~~~~m~~  568 (709)
                              ++++++.+.++....
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~  220 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFF  220 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHh
Confidence                    567888888877754

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.71  E-value=0.021  Score=48.85  Aligned_cols=110  Identities=8%  Similarity=-0.089  Sum_probs=75.3

Q ss_pred             CCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCChHHH
Q 039873          215 ECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGK----CGKFSNA  290 (709)
Q Consensus       215 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A  290 (709)
                      +++++|++.|++..+.| .|+..    +-..+...+.++.|.+.++...+.|   +...+..|..+|..    .++.++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            35677788888777766 22322    5555556667777777777777765   55667777777776    6777788


Q ss_pred             HHHHHhccC-CCHhhHHHHHHHHHH----cCCHhHHHHHHHHHHhCC
Q 039873          291 KKVFEGLET-RNVVLWTAMVAACFQ----NEYFEEALNLFCGMEYEA  332 (709)
Q Consensus       291 ~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g  332 (709)
                      .+.|++..+ .+..++..|...|..    .++.++|++.|++..+.|
T Consensus        81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            877777654 456667777777776    677777777777776655

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.70  E-value=0.034  Score=55.57  Aligned_cols=47  Identities=11%  Similarity=-0.024  Sum_probs=29.4

Q ss_pred             CCChhhHHHHHHHHHH--cCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 039873          400 YRDIITWNAMICGYSH--HGL---GREALTLFQNMLAAEERPNH-VTFVGVLSAC  448 (709)
Q Consensus       400 ~~~~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~  448 (709)
                      ..|...|...+.+...  .+.   ..+|..+|++..+  ..|+. ..+..+..++
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~  243 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD  243 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence            3467777777765432  333   4789999999988  57873 3444433333

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.69  E-value=0.0048  Score=50.79  Aligned_cols=63  Identities=13%  Similarity=0.022  Sum_probs=31.4

Q ss_pred             ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873          402 DIITWNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMK  466 (709)
Q Consensus       402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  466 (709)
                      +...|..+...|...|++++|+..|++....  .| +...+..+..++...|++++|...|+...+
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344555555555555555555555555542  22 233444455555555555555555555443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.67  E-value=0.1  Score=43.07  Aligned_cols=140  Identities=10%  Similarity=-0.017  Sum_probs=99.0

Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHH
Q 039873          414 SHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEA  493 (709)
Q Consensus       414 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A  493 (709)
                      .-.|..++..++..+....   .+..-++.++.-....-+-+-..+.++.+    |-..|          ...||++...
T Consensus        18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~I----GkiFD----------is~C~NlKrV   80 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI----GSYFD----------LDKCQNLKSV   80 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH----GGGSC----------GGGCSCTHHH
T ss_pred             HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHH----hhhcC----------cHhhhcHHHH
Confidence            3456777777777777653   23444555554444444445555555554    33333          2357788877


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCc
Q 039873          494 EKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVK  572 (709)
Q Consensus       494 ~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  572 (709)
                      .+.+-.++  .+......-+......|.-++-.++...++.-++.++....-++++|.+.|...+|.+++++.-++|++
T Consensus        81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            77777765  345556677788889999999999999987777778899999999999999999999999999999884

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.60  E-value=0.012  Score=61.35  Aligned_cols=92  Identities=10%  Similarity=-0.004  Sum_probs=56.4

Q ss_pred             cccHHHHHHHHHHHHHhhC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 039873          451 LGLVQEGFYYLNHLMKQIG--IVPG----LEHYTCIVGLLSKAGLLDEAEKFMRST---------PVKWD-VVAWHTLLN  514 (709)
Q Consensus       451 ~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~pd-~~~~~~ll~  514 (709)
                      .|++++|..++++......  +.|+    ..+++.|..+|...|++++|+.++++.         +..|+ ..+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            4566777777666554321  1222    245666677777777777777665432         12344 556777777


Q ss_pred             HHHhcCCchHHHHHHHHHHh-----cCCCCchh
Q 039873          515 ASRVHQNYGFGRRIAEYILH-----MDPNDVGT  542 (709)
Q Consensus       515 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~  542 (709)
                      .|...|++++|+.+++++++     ++|+.+.+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            78888888888888877766     35665543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.57  E-value=0.0026  Score=66.31  Aligned_cols=83  Identities=8%  Similarity=-0.009  Sum_probs=67.0

Q ss_pred             hcCCHHHHHHHHHhC------CC---CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----CCCCc---hhHHHHH
Q 039873          486 KAGLLDEAEKFMRST------PV---KWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHM-----DPNDV---GTYILLS  547 (709)
Q Consensus       486 ~~g~~~~A~~~~~~~------~~---~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~  547 (709)
                      ..|++++|+.++++.      -+   .|+ ..+++.|..+|...|++++|+.++++++++     +|+++   .+|+.|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            357888888886532      12   233 567889999999999999999999999873     45544   4688999


Q ss_pred             HHhhhcCCchhHHHHHHHHHh
Q 039873          548 NMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       548 ~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      .+|..+|++++|..++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.44  E-value=0.15  Score=58.09  Aligned_cols=153  Identities=16%  Similarity=0.180  Sum_probs=93.9

Q ss_pred             HHhCCCccHHHH-HHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHH
Q 039873          211 LIENECFRGGVE-VLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSN  289 (709)
Q Consensus       211 ~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~  289 (709)
                      ....+++++|.+ ++..+      |+...+..++..+.+.|..+.|.++.+         +.   ..-.....++|++++
T Consensus       609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~  670 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTL  670 (814)
T ss_dssp             HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHH
T ss_pred             HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHH
Confidence            344666666655 33111      111222555556666677666665542         11   112345667899999


Q ss_pred             HHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCC
Q 039873          290 AKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFK  369 (709)
Q Consensus       290 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~  369 (709)
                      |.++.+.+.  +...|..+...+.+.|+++.|.+.|.++..         |..+...+...++.+....+-..+...|. 
T Consensus       671 A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-  738 (814)
T 3mkq_A          671 ARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK-  738 (814)
T ss_dssp             HHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence            999887764  567899999999999999999999988753         44455555556666665555555554441 


Q ss_pred             CChhHHhHHHhHHHhcCCHHHHHHHHhhc
Q 039873          370 EHLIVGNALINMYAKGGNIEAANKVFSDM  398 (709)
Q Consensus       370 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~  398 (709)
                           ++.-...|.++|++++|.+++.++
T Consensus       739 -----~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          739 -----FNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             -----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             -----hHHHHHHHHHcCCHHHHHHHHHHc
Confidence                 233444566667777776665443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.44  E-value=0.019  Score=59.76  Aligned_cols=69  Identities=12%  Similarity=-0.042  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh-----cCCCCc
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMRST---------PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILH-----MDPNDV  540 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~~~---------~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~  540 (709)
                      +++.|..+|...|++++|+.++++.         +..|+ ..+++.|...|...|++++|+.+++++++     ++|+.+
T Consensus       331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp  410 (429)
T 3qwp_A          331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS  410 (429)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            4455555555555555555554321         12344 56677788888888888888888888776     467766


Q ss_pred             hhHH
Q 039873          541 GTYI  544 (709)
Q Consensus       541 ~~~~  544 (709)
                      .+-.
T Consensus       411 ~~~~  414 (429)
T 3qwp_A          411 LIED  414 (429)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.28  E-value=0.0084  Score=47.60  Aligned_cols=51  Identities=18%  Similarity=0.218  Sum_probs=24.0

Q ss_pred             HhcCCchHHHHHHHHHHhcCCCCch-hHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873          517 RVHQNYGFGRRIAEYILHMDPNDVG-TYILLSNMYAKEKRWDGVSKIRKLMK  567 (709)
Q Consensus       517 ~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~  567 (709)
                      ...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..
T Consensus        11 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   62 (99)
T 2kc7_A           11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI   62 (99)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444444444444444444444444 44444444444444444444444443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.07  E-value=0.021  Score=45.21  Aligned_cols=79  Identities=11%  Similarity=0.029  Sum_probs=56.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCc
Q 039873          480 IVGLLSKAGLLDEAEKFMRST-PVKW-DVV-AWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRW  556 (709)
Q Consensus       480 li~~~~~~g~~~~A~~~~~~~-~~~p-d~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  556 (709)
                      ....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|+..++++++++|++...+..        +.+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~   77 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV   77 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence            345667788888888887643 2234 366 78888888999999999999999999999988776622        444


Q ss_pred             hhHHHHHHHH
Q 039873          557 DGVSKIRKLM  566 (709)
Q Consensus       557 ~~a~~~~~~m  566 (709)
                      .++...+++.
T Consensus        78 ~~a~~~~~~~   87 (99)
T 2kc7_A           78 MDILNFYNKD   87 (99)
T ss_dssp             HHHHHHHCCT
T ss_pred             HHHHHHHHHH
Confidence            5555555433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.76  E-value=0.35  Score=55.09  Aligned_cols=155  Identities=12%  Similarity=0.100  Sum_probs=103.1

Q ss_pred             HHHhCCChhHHHH-HHHHhhhCCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 039873          108 WYLHNGFLLETLK-LFKNMVSGDNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDV  186 (709)
Q Consensus       108 ~~~~~g~~~~A~~-~~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~  186 (709)
                      .....+++++|.+ ++..+       |+......++..+.+.|..+.|.++..         +.   ..-......+|++
T Consensus       608 ~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~  668 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQL  668 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCH
T ss_pred             HHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCH
Confidence            3345677777766 44222       112233666666777777777765432         11   1123456678999


Q ss_pred             HHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcC
Q 039873          187 EMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSD  266 (709)
Q Consensus       187 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g  266 (709)
                      ++|.++.+.+.  +...|..+...+.+.|+++.|.+.|.++..         |..+...+...++.+...++-+.....|
T Consensus       669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~  737 (814)
T 3mkq_A          669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG  737 (814)
T ss_dssp             HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            99999988774  567899999999999999999999998853         4455555556777777666666665554


Q ss_pred             CCCchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 039873          267 IEPDVFINSAMISMYGKCGKFSNAKKVFEGLE  298 (709)
Q Consensus       267 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~  298 (709)
                      .      ++.-..+|.+.|++++|.+++.++.
T Consensus       738 ~------~~~A~~~~~~~g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          738 K------FNLAFNAYWIAGDIQGAKDLLIKSQ  763 (814)
T ss_dssp             C------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             c------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            2      3444556777788888877765553

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.70  E-value=0.038  Score=47.47  Aligned_cols=65  Identities=9%  Similarity=-0.057  Sum_probs=45.3

Q ss_pred             CCHHHHHHHHHHHHhcC---CchHHHHHHHHHHhcC-C-CCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          504 WDVVAWHTLLNASRVHQ---NYGFGRRIAEYILHMD-P-NDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       504 pd~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ++..+.-.+..++.+.+   +.++|+.+++.+.+.+ | .+...+..|+-+|.+.|++++|++.++...+
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            45566666666666666   5557777777777776 5 3456667777777888888888888877765

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.51  E-value=0.15  Score=50.95  Aligned_cols=132  Identities=8%  Similarity=-0.030  Sum_probs=90.3

Q ss_pred             CCCCHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHH----hcCC-------HHHHHHH
Q 039873          434 ERPNHVTFVGVLSACGH-----LGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLS----KAGL-------LDEAEKF  496 (709)
Q Consensus       434 ~~pd~~t~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~----~~g~-------~~~A~~~  496 (709)
                      .+.|...|...+.+...     .....+|..+|+++++.   .|+ ...|..+.-+|.    ..+.       +.+|.+-
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a  266 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN  266 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence            35566677777766432     23468899999998764   666 233333322221    1111       1122222


Q ss_pred             HHhCCC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          497 MRSTPV-KWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       497 ~~~~~~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      ...+.. ..++.+|..+...+...|+++.|...++++++++| +...|..++.++.-.|++++|.+.+++....
T Consensus       267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            223322 34588888887777788999999999999999997 4678889999999999999999999988764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.15  E-value=0.072  Score=51.00  Aligned_cols=75  Identities=8%  Similarity=-0.006  Sum_probs=62.7

Q ss_pred             CCCC---HHHHHHHHHHHHh-----cCCchHHHHHHHHHHhcCCCC-chhHHHHHHHhhhc-CCchhHHHHHHHHHhCCC
Q 039873          502 VKWD---VVAWHTLLNASRV-----HQNYGFGRRIAEYILHMDPND-VGTYILLSNMYAKE-KRWDGVSKIRKLMKVRKV  571 (709)
Q Consensus       502 ~~pd---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~  571 (709)
                      +.|+   ...|..|...|.+     -|+.++|++.|+++++++|+. ..+++.++..|+.. |+.+++.+.+++......
T Consensus       192 LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p  271 (301)
T 3u64_A          192 LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP  271 (301)
T ss_dssp             HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred             hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence            3555   5677777777777     499999999999999999975 99999999999885 999999999999988766


Q ss_pred             ccCCc
Q 039873          572 KKEPG  576 (709)
Q Consensus       572 ~~~~~  576 (709)
                      ...|+
T Consensus       272 ~~~P~  276 (301)
T 3u64_A          272 ESVPH  276 (301)
T ss_dssp             GGCSS
T ss_pred             CCCCC
Confidence            54454

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.89  E-value=1.5  Score=38.61  Aligned_cols=129  Identities=7%  Similarity=0.043  Sum_probs=76.1

Q ss_pred             HHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHH
Q 039873          279 SMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDL  358 (709)
Q Consensus       279 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~  358 (709)
                      +...++|+++.|.++.+.+  .+...|..+.....+.|+.+-|.+.|.+...         +..+.-.|...|+.+.-..
T Consensus        13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k   81 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK   81 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence            3455778888888877766  4567788888888888888888888876542         3444444555566665555


Q ss_pred             HHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 039873          359 LHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNM  429 (709)
Q Consensus       359 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  429 (709)
                      +-+.....|      -++.-...+.-.|+++++.++|.+...-...     +.....+|..+.|.++.+++
T Consensus        82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence            555444444      1233344455567777777777655431111     11112245555566665544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=94.52  E-value=0.42  Score=40.95  Aligned_cols=37  Identities=11%  Similarity=0.052  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchh
Q 039873          506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGT  542 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  542 (709)
                      ...+-.|.-+|.+.|++++|++.++.+++++|++..+
T Consensus        71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  107 (152)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            3445556678899999999999999999999987543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.26  E-value=1.6  Score=38.35  Aligned_cols=129  Identities=9%  Similarity=-0.037  Sum_probs=86.9

Q ss_pred             HHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHH
Q 039873          178 ELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQ  257 (709)
Q Consensus       178 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  257 (709)
                      +....+|+++.|.++.+.+  .+...|..|.....+.|+++-|.+.|.+...         |..+.-.|...|+.+.-.+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k   81 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK   81 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence            3445788888888887766  3567899999999999999999999988753         4455555556677776666


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 039873          258 VHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGM  328 (709)
Q Consensus       258 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  328 (709)
                      +-+.....|-      +|.-...+.-.|+++++.++|.+.......     +......|..+.|.++..++
T Consensus        82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence            6555555541      455555666788888888888776542211     11112356667777776655

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.18  E-value=0.24  Score=38.64  Aligned_cols=76  Identities=8%  Similarity=-0.043  Sum_probs=53.6

Q ss_pred             CChHHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873          472 PGLEHYTCIVGLLSKAGL---LDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL  546 (709)
Q Consensus       472 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  546 (709)
                      .+...+..+..++...++   .++|..++++. ...|+ +..+..+...+...|++++|+..++++++.+|+ ......+
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i   82 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTI   82 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHH
Confidence            455667777777755444   67888887643 34555 667777777888999999999999999999987 3334444


Q ss_pred             HH
Q 039873          547 SN  548 (709)
Q Consensus       547 ~~  548 (709)
                      ..
T Consensus        83 ~~   84 (93)
T 3bee_A           83 IE   84 (93)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.91  E-value=0.37  Score=38.44  Aligned_cols=69  Identities=13%  Similarity=0.024  Sum_probs=46.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHH
Q 039873          478 TCIVGLLSKAGLLDEAEKFMRST---------PVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILL  546 (709)
Q Consensus       478 ~~li~~~~~~g~~~~A~~~~~~~---------~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  546 (709)
                      -.|...+.+.|+++.|...|+..         +-.+...++..|..++.+.|+++.|...++++++++|++..+...+
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~   86 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence            34444445555555555443321         0123467788888899999999999999999999999887664444

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=92.41  E-value=0.018  Score=58.78  Aligned_cols=238  Identities=12%  Similarity=0.046  Sum_probs=149.8

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 039873          169 CKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSAS  248 (709)
Q Consensus       169 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~  248 (709)
                      .+.+|+.|..++.+.|.+.+|.+-|  +...|+..|..+|....+.|.+++-+..+...++..-  ++..=+.++-+|++
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk  128 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK  128 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence            3456666667776767666666554  2345666777778877788888777777665555422  22333566777777


Q ss_pred             CCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccC------------------------CCHhh
Q 039873          249 LKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLET------------------------RNVVL  304 (709)
Q Consensus       249 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------------------------~~~~~  304 (709)
                      .+++.+-++++.       .|+..-...+.+-+...|.++.|.-+|..+..                        .++.+
T Consensus       129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt  201 (624)
T 3lvg_A          129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT  201 (624)
T ss_dssp             SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred             hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence            777655433321       34554455566666677777777777666541                        35678


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh
Q 039873          305 WTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK  384 (709)
Q Consensus       305 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~  384 (709)
                      |-.+-.+|...+.+.-|.-.--.++   +.||.  ...++.-|-..|.+++-..+++.-.... .....+++-|.-.|+|
T Consensus       202 WKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK  275 (624)
T 3lvg_A          202 WKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK  275 (624)
T ss_dssp             HHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence            8888888888888876654443333   22332  3345556777787777777776655221 3567788888888887


Q ss_pred             cCCHHHHHHHHhhcC----CC-------ChhhHHHHHHHHHHcCChHHHHH
Q 039873          385 GGNIEAANKVFSDMR----YR-------DIITWNAMICGYSHHGLGREALT  424 (709)
Q Consensus       385 ~g~~~~A~~~f~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~  424 (709)
                      - ++++-.+-++...    -|       ....|.-++-.|.+..+++.|..
T Consensus       276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            5 3444444443322    12       44689999999998888887754

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=91.83  E-value=0.67  Score=38.16  Aligned_cols=90  Identities=8%  Similarity=-0.088  Sum_probs=43.7

Q ss_pred             hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHhCCC-C-C--CHHHHHHHHHHHHhcCC
Q 039873          449 GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDE---AEKFMRSTPV-K-W--DVVAWHTLLNASRVHQN  521 (709)
Q Consensus       449 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~-~-p--d~~~~~~ll~~~~~~g~  521 (709)
                      .....+..+.+.+...... |. ++..+--.+..++.++.+..+   +..+++..-- . |  .....-.|.-++.+.|+
T Consensus        12 ~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~   89 (126)
T 1nzn_A           12 VSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE   89 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence            3334444555555544332 22 455555555556666655544   4555543311 1 2  12222334445556666


Q ss_pred             chHHHHHHHHHHhcCCCCc
Q 039873          522 YGFGRRIAEYILHMDPNDV  540 (709)
Q Consensus       522 ~~~a~~~~~~~~~~~p~~~  540 (709)
                      ++.|.+.++.+++.+|+|.
T Consensus        90 Y~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           90 YEKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCH
Confidence            6666666666666666553

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=91.34  E-value=0.72  Score=36.71  Aligned_cols=64  Identities=14%  Similarity=0.012  Sum_probs=53.6

Q ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcC-------CCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          505 DVVAWHTLLNASRVHQNYGFGRRIAEYILHMD-------PNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       505 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +..-.-.|...+...|+++.|...++.+++..       +..+..+..|+.+|.+.|++++|...+++..+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            34445567788889999999999999998742       34567889999999999999999999999875

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=91.10  E-value=4.7  Score=33.77  Aligned_cols=65  Identities=8%  Similarity=-0.061  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHHHHHhcC---CchHHHHHHHHHHhcCCC-CchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          504 WDVVAWHTLLNASRVHQ---NYGFGRRIAEYILHMDPN-DVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       504 pd~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      |+..+--.+..++.+..   +..+++.+++.+....|. .......|+-+|.+.|++++|+++.+.+.+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            33333333444444333   344566666666665553 233445566666777777777777666654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.72  E-value=1.8  Score=47.78  Aligned_cols=54  Identities=9%  Similarity=0.094  Sum_probs=50.7

Q ss_pred             HHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873          514 NASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK  567 (709)
Q Consensus       514 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  567 (709)
                      .-|...|+++.|+.+++++...-|.+..++..|+.+|.+.|+|+.|.-.++.++
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            356778999999999999999999999999999999999999999999999986

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=90.65  E-value=6.2  Score=32.70  Aligned_cols=83  Identities=8%  Similarity=-0.072  Sum_probs=46.6

Q ss_pred             cCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHH
Q 039873          284 CGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHI  363 (709)
Q Consensus       284 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~  363 (709)
                      ||++......+-.+.. +....+..+..+..+|.-++-.+++..+.. +.+|+......+..||.+.|+..++.+++.++
T Consensus        74 C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A  151 (172)
T 1wy6_A           74 CQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA  151 (172)
T ss_dssp             CSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            4444444444433322 223344455666667777776666666433 23455556666666777777777777776666


Q ss_pred             HHhCC
Q 039873          364 EKSGF  368 (709)
Q Consensus       364 ~~~g~  368 (709)
                      -+.|+
T Consensus       152 C~kG~  156 (172)
T 1wy6_A          152 CKKGE  156 (172)
T ss_dssp             HHTTC
T ss_pred             HHhhh
Confidence            66664

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=89.02  E-value=5.3  Score=32.79  Aligned_cols=86  Identities=13%  Similarity=-0.036  Sum_probs=51.2

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHH---HHHHHHHHHHhhCCCC--ChHHHHHHHHHHHhcCCHH
Q 039873          417 GLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQE---GFYYLNHLMKQIGIVP--GLEHYTCIVGLLSKAGLLD  491 (709)
Q Consensus       417 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~  491 (709)
                      .....+.+-|.+....|. |+..|--.+..++.++.....   |+.+++...+.  -.|  .....-.|.-++.|.|+++
T Consensus        15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHH
Confidence            344555566666655553 665555556667776665544   77777776542  113  2233345566778888888


Q ss_pred             HHHHHHHhC-CCCCC
Q 039873          492 EAEKFMRST-PVKWD  505 (709)
Q Consensus       492 ~A~~~~~~~-~~~pd  505 (709)
                      +|++.++.+ .++|+
T Consensus        92 ~A~~~~~~lL~~eP~  106 (126)
T 1nzn_A           92 KALKYVRGLLQTEPQ  106 (126)
T ss_dssp             HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCC
Confidence            888887644 33454

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=88.78  E-value=4  Score=31.51  Aligned_cols=87  Identities=17%  Similarity=0.239  Sum_probs=61.1

Q ss_pred             ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873          352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLA  431 (709)
Q Consensus       352 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  431 (709)
                      .-++|..|-+.+...+-  ...+--.-+..+...|++++|..+.+....||++.|-+|-.  .+.|..+++..-+.++..
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   97 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR   97 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            45666666666666553  23333333455678999999999999999999999988865  466777888777777777


Q ss_pred             CCCCCCHHHHHH
Q 039873          432 AEERPNHVTFVG  443 (709)
Q Consensus       432 ~g~~pd~~t~~~  443 (709)
                      +| .|....|..
T Consensus        98 sg-~p~~q~Fa~  108 (116)
T 2p58_C           98 SQ-DPRIQTFVN  108 (116)
T ss_dssp             CC-CHHHHHHHH
T ss_pred             CC-CHHHHHHHH
Confidence            66 565555543

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=88.63  E-value=3.8  Score=31.61  Aligned_cols=87  Identities=16%  Similarity=0.171  Sum_probs=62.1

Q ss_pred             ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873          352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLA  431 (709)
Q Consensus       352 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  431 (709)
                      .-++|..|-+.+...+-  ...+--.-+..+...|++++|..+.+....||++.|-+|-.  .+.|..+++..-+.++..
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   96 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG   96 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            44666666666666553  23333333455678999999999999999999999988765  577888888888878887


Q ss_pred             CCCCCCHHHHHH
Q 039873          432 AEERPNHVTFVG  443 (709)
Q Consensus       432 ~g~~pd~~t~~~  443 (709)
                      +| .|....|..
T Consensus        97 sg-~p~~q~Fa~  107 (115)
T 2uwj_G           97 SS-DPALADFAA  107 (115)
T ss_dssp             CS-SHHHHHHHH
T ss_pred             CC-CHHHHHHHH
Confidence            76 565555543

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=87.76  E-value=34  Score=36.98  Aligned_cols=252  Identities=8%  Similarity=-0.029  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccC
Q 039873          272 FINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLS  351 (709)
Q Consensus       272 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~  351 (709)
                      ..-+.-+..+.+.+++.....++.. +..+...-.....+....|+..+|....+.+-..| .........++....+.|
T Consensus        73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g  150 (618)
T 1qsa_A           73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG  150 (618)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence            3444555666777788877776666 44455555556667777788777777777666554 233344556666665544


Q ss_pred             ChhHH--HHHHHHHHHhC-----------CCCCh-hHHhHHHhHHHhcCCHHHHHHHHhhcCCCChh---hHHHHHHHHH
Q 039873          352 ALRHG--DLLHAHIEKSG-----------FKEHL-IVGNALINMYAKGGNIEAANKVFSDMRYRDII---TWNAMICGYS  414 (709)
Q Consensus       352 ~~~~a--~~i~~~~~~~g-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~  414 (709)
                      .+...  .+=+..+...|           ++++. .....++..+.+-..   +....... .++..   ....-+.-+.
T Consensus       151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~---~~~~~~~~-~~~~~~~~~~~~~~~rla  226 (618)
T 1qsa_A          151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VLTFARTT-GATDFTRQMAAVAFASVA  226 (618)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HHHHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHh---HHHHHhcc-CCChhhHHHHHHHHHHHH
Confidence            43221  11111222211           11111 111222222221111   11111111 11111   1111222333


Q ss_pred             HcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH
Q 039873          415 HHGLGREALTLFQNMLAAEERPNHVTF----VGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLL  490 (709)
Q Consensus       415 ~~g~~~~A~~~~~~m~~~g~~pd~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  490 (709)
                      + .+.+.|..+|......+ ..+....    ..+.......+...++...+.....   ..++.....-.+....+.|++
T Consensus       227 r-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~  301 (618)
T 1qsa_A          227 R-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDR  301 (618)
T ss_dssp             H-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCH
T ss_pred             h-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCH
Confidence            3 37788999998886543 2232222    2222233444524455566665433   223333333344445577999


Q ss_pred             HHHHHHHHhCCCCC-CHHHHH-HHHHHHHhcCCchHHHHHHHHHHh
Q 039873          491 DEAEKFMRSTPVKW-DVVAWH-TLLNASRVHQNYGFGRRIAEYILH  534 (709)
Q Consensus       491 ~~A~~~~~~~~~~p-d~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~  534 (709)
                      +.|...|+.++-.+ +..-|. =+..+....|+.++|..+++.+.+
T Consensus       302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            99999999886432 212221 133366778999999999999875

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.80  E-value=27  Score=35.98  Aligned_cols=51  Identities=6%  Similarity=0.014  Sum_probs=33.3

Q ss_pred             CChhHHHHHHHHhhhC----CCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHH
Q 039873          113 GFLLETLKLFKNMVSG----DNLEPNEYIFSIVLSSCSRSGRGAEGRQCHGYVFK  163 (709)
Q Consensus       113 g~~~~A~~~~~~m~~~----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  163 (709)
                      |++++|++.+..+.+.    ....-.......++..|...++++...+....+.+
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk   84 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK   84 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            6788888877666421    12233455577788888888888877666555443

>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A

Probab=86.04  E-value=24  Score=38.25  Aligned_cols=81  Identities=11%  Similarity=0.045  Sum_probs=41.0

Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh---
Q 039873          308 MVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK---  384 (709)
Q Consensus       308 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~---  384 (709)
                      ....+.-.|+++.|++++.+.    ...|.+.+...+.-+.-.+-   ...++..-  .+ .| ..-+..||..|.+   
T Consensus       300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~  368 (661)
T 2qx5_A          300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR  368 (661)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred             HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence            455667789999999887644    24455556555554433221   11111110  01 11 2224566777765   


Q ss_pred             cCCHHHHHHHHhhcC
Q 039873          385 GGNIEAANKVFSDMR  399 (709)
Q Consensus       385 ~g~~~~A~~~f~~~~  399 (709)
                      ..+..+|.+.|--+.
T Consensus       369 ~td~~~Al~Y~~li~  383 (661)
T 2qx5_A          369 YSDPRVAVEYLVLIT  383 (661)
T ss_dssp             TTCHHHHHHHHHGGG
T ss_pred             cCCHHHHHHHHHHHh
Confidence            567777777776654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=85.50  E-value=8.4  Score=32.63  Aligned_cols=106  Identities=6%  Similarity=0.074  Sum_probs=60.6

Q ss_pred             CCChhhHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHHHH---HhccccHHHHHHHHHHHHH
Q 039873          400 YRDIITWNAMICGYSHHGLG------REALTLFQNMLAAEERPNHV----TFVGVLSA---CGHLGLVQEGFYYLNHLMK  466 (709)
Q Consensus       400 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~pd~~----t~~~ll~a---~~~~g~~~~a~~~~~~~~~  466 (709)
                      ..|..+|-..+....+.|++      ++..++|++.... ++|+..    .|..+.--   +...+++++|+++|+.+.+
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            45778888888888888888      8888888888774 666521    11111111   1122445555555554433


Q ss_pred             hhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCc
Q 039873          467 QIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDV  540 (709)
Q Consensus       467 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  540 (709)
                      . .-.                                 =...|-....--.++|++..|.+++.+++.+.|...
T Consensus        89 ~-hKk---------------------------------FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           89 N-CKK---------------------------------FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             H-CTT---------------------------------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             H-hHH---------------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            1 111                                 144444444444556777777777777777666543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=85.47  E-value=28  Score=33.77  Aligned_cols=167  Identities=12%  Similarity=0.061  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHH----HHHHHhCCCCCChhhHHHHHHHHh
Q 039873          172 VRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEV----LGKMVSGSVRWDSVTYVNAFGLSA  247 (709)
Q Consensus       172 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~  247 (709)
                      .+.++..-|.+.+++++|.+++..           -...+.+.|+...|-++    .+...+.++++|..+...++..+.
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~  103 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA  103 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            345556667888888888887643           23456667887666654    455566788888888888887776


Q ss_pred             cCCCcH-HHHHHHHHHH----HcC--CCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHc---CC
Q 039873          248 SLKDLK-LGLQVHSQML----KSD--IEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQN---EY  317 (709)
Q Consensus       248 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g~  317 (709)
                      ....-+ .-.++...++    +.|  -..|......+...|.+.|++.+|+.-|-.-...|...+-.|+.-+.+.   |.
T Consensus       104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~  183 (312)
T 2wpv_A          104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE  183 (312)
T ss_dssp             TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence            543222 2233444444    333  2247788899999999999999999988633323455555555544444   55


Q ss_pred             HhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHH
Q 039873          318 FEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIE  364 (709)
Q Consensus       318 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~  364 (709)
                      ..++--+.-              ..++ -+...+++..|..++....
T Consensus       184 ~~e~dlf~~--------------RaVL-~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          184 DSTVAEFFS--------------RLVF-NYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HHHHHHHHH--------------HHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred             cchHHHHHH--------------HHHH-HHHHhcCHHHHHHHHHHHH
Confidence            444322221              1222 2335667777777776554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=84.76  E-value=58  Score=36.86  Aligned_cols=294  Identities=11%  Similarity=-0.017  Sum_probs=144.5

Q ss_pred             HHHHHHHHhCCCccHH-HHHHHHHHhCCCCCChhhHHH-HHHHHhcCCCcHHHHHHHHHHHHcC--CCCchHHHHHHHHH
Q 039873          205 NSVLNGLIENECFRGG-VEVLGKMVSGSVRWDSVTYVN-AFGLSASLKDLKLGLQVHSQMLKSD--IEPDVFINSAMISM  280 (709)
Q Consensus       205 ~~li~~~~~~g~~~~A-~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~  280 (709)
                      .++.+++...|--.+. +.......-.. + +..-+.+ .--+....|+.+++..++...+..+  -.+.+.....+.-+
T Consensus       343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~-~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG  420 (963)
T 4ady_A          343 VSVANGFMHAGTTDNSFIKANLPWLGKA-Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG  420 (963)
T ss_dssp             HHHHHHHHTTTTCCCHHHHHCHHHHHHC-C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcchhhhcchhhhhcc-c-hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence            3566778777765443 22111111110 1 1111222 1223456788888877776654421  12223444455555


Q ss_pred             HHhcCChHHHHHHHHhcc-CCC----------HhhHHHHHHHHHHcCC-HhHHHHHHHHHHhCCCCCCccc--hH--HHH
Q 039873          281 YGKCGKFSNAKKVFEGLE-TRN----------VVLWTAMVAACFQNEY-FEEALNLFCGMEYEAIRPNEFT--FA--VML  344 (709)
Q Consensus       281 y~~~g~~~~A~~~~~~m~-~~~----------~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t--~~--~ll  344 (709)
                      ...+|.-+++..++.... ..+          +..-.++.-|++-.|. -+++.+.+..+....   +..+  ..  ++.
T Consensus       421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALG  497 (963)
T 4ady_A          421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMG  497 (963)
T ss_dssp             HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHh
Confidence            666676666776655533 222          1112233334433343 246677777766532   2111  11  222


Q ss_pred             HHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHH--hcCCHHHHHHHHhhcC-CCCh-hhHH---HHHHHHHHcC
Q 039873          345 NSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYA--KGGNIEAANKVFSDMR-YRDI-ITWN---AMICGYSHHG  417 (709)
Q Consensus       345 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~--~~g~~~~A~~~f~~~~-~~~~-~~~~---~li~~~~~~g  417 (709)
                      ..+...|+-+....++..+.+.   .+..+...++-+++  -.|+.+.+..+.+.+. ..|. +-|.   ++..+|+-.|
T Consensus       498 li~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTG  574 (963)
T 4ady_A          498 LCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTG  574 (963)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC
T ss_pred             hhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC
Confidence            2345667777777777777653   23333333444443  5677776666666554 2332 2333   3345677778


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH-HHHHHH
Q 039873          418 LGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLL-DEAEKF  496 (709)
Q Consensus       418 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~  496 (709)
                      +.....++++.+.... ..+......+.-+....|+.+.+.++++.+.+  ...|.+....++.-+....|.. .+|.+.
T Consensus       575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~  651 (963)
T 4ady_A          575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDV  651 (963)
T ss_dssp             CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred             CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence            8766666888877631 22222222222233345555555555554432  2345555455555555555553 566777


Q ss_pred             HHhCCCCCCHHHH
Q 039873          497 MRSTPVKWDVVAW  509 (709)
Q Consensus       497 ~~~~~~~pd~~~~  509 (709)
                      +..+...+|..+-
T Consensus       652 L~~L~~D~d~~Vr  664 (963)
T 4ady_A          652 LDPLTKDPVDFVR  664 (963)
T ss_dssp             HHHHHTCSSHHHH
T ss_pred             HHHHccCCCHHHH
Confidence            6666445554433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=84.58  E-value=5  Score=38.40  Aligned_cols=60  Identities=17%  Similarity=0.066  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Q 039873          405 TWNAMICGYSH-----HGLGREALTLFQNMLAAEERPN--HVTFVGVLSACGH-LGLVQEGFYYLNHLMK  466 (709)
Q Consensus       405 ~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~  466 (709)
                      .|..+...|.+     -|+.++|.++|++.++  +.|+  ..++......++. .|+.+++.+.+++.+.
T Consensus       201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~  268 (301)
T 3u64_A          201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA  268 (301)
T ss_dssp             HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence            44444444444     2455555555555554  3332  3334444444444 2555555555555443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.67  E-value=40  Score=34.70  Aligned_cols=308  Identities=12%  Similarity=0.058  Sum_probs=148.6

Q ss_pred             CCccHHHHHHHHHHhC-----CCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHc-CCCCchHHHHHHHH----HHHhc
Q 039873          215 ECFRGGVEVLGKMVSG-----SVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKS-DIEPDVFINSAMIS----MYGKC  284 (709)
Q Consensus       215 g~~~~A~~l~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~----~y~~~  284 (709)
                      |++++|++-+..+.+.     ...........++..|...++++...+.+..+.+. |..+.  ....+++    .....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence            6788888877666542     23334455777888888888888776666555443 32221  1222332    22222


Q ss_pred             CChH--HHHHHHHhccC---CC-------HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCC
Q 039873          285 GKFS--NAKKVFEGLET---RN-------VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSA  352 (709)
Q Consensus       285 g~~~--~A~~~~~~m~~---~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~  352 (709)
                      ...+  .-..+.+....   .-       ......|...|-..|++.+|.+++.++..+-...+....            
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~------------  175 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE------------  175 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH------------
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH------------
Confidence            2222  22222222221   10       012234556666777777777777776542111111100            


Q ss_pred             hhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--------CC--hhhHHHHHHHHHHcCChHHH
Q 039873          353 LRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--------RD--IITWNAMICGYSHHGLGREA  422 (709)
Q Consensus       353 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~~--~~~~~~li~~~~~~g~~~~A  422 (709)
                                        -..++...+..|...+++..|..++.++..        |+  ..-+..++..+...+++.+|
T Consensus       176 ------------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a  237 (445)
T 4b4t_P          176 ------------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEV  237 (445)
T ss_dssp             ------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred             ------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHH
Confidence                              012233344555566666666665555421        11  12445555666667777777


Q ss_pred             HHHHHHHHHC-CCCCCHHHHHHHHH----H--HhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc--CCHHHH
Q 039873          423 LTLFQNMLAA-EERPNHVTFVGVLS----A--CGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA--GLLDEA  493 (709)
Q Consensus       423 ~~~~~~m~~~-g~~pd~~t~~~ll~----a--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~A  493 (709)
                      .+.|.+.... .+.-|...+..++.    .  .+..+.  +-..+......+ ..-++...|..++.+|...  .+++.+
T Consensus       238 ~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~--~~~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~L~~~~~~  314 (445)
T 4b4t_P          238 AQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGN--LQNDLIHKIQND-NNLKKLESQESLVKLFTTNELMRWPIV  314 (445)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSS--TTHHHHHSHHHH-SSCHHHHHHHHHHHHHHHCCSSSHHHH
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHhhc-ccccccHHHHHHHHHHHhchHhhhHHH
Confidence            7766666431 01112221111111    1  111111  111122222222 2335667888899988764  457777


Q ss_pred             HHHHHhCCCCCC---------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHH
Q 039873          494 EKFMRSTPVKWD---------VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRK  564 (709)
Q Consensus       494 ~~~~~~~~~~pd---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~  564 (709)
                      .+.|...- .++         ...|..|......|+-        ..+  ..|-+...+..++..+.-  ..+++.....
T Consensus       315 ~~~~~~~L-~~~~~~~~~~~~~~~~~~L~~~v~ehnl--------~~i--~k~Ys~I~l~~la~lL~l--~~~evE~~ls  381 (445)
T 4b4t_P          315 QKTYEPVL-NEDDLAFGGEANKHHWEDLQKRVIEHNL--------RVI--SEYYSRITLLRLNELLDL--TESQTETYIS  381 (445)
T ss_dssp             HHHTCSST-TTCCSSCCCSCSSHHHHHHHHHHHHHHH--------HHH--HHHEEEEEHHHHHHHHTS--CHHHHHHHHH
T ss_pred             HHHHHHHh-cccchhhhcchhhHHHHHHHHHHHHHHH--------HHH--HHHhceeeHHHHHHHhCc--CHHHHHHHHH
Confidence            77765431 122         2345555554444320        011  122233445555555532  3578888888


Q ss_pred             HHHhCC
Q 039873          565 LMKVRK  570 (709)
Q Consensus       565 ~m~~~~  570 (709)
                      .|...|
T Consensus       382 ~mI~~g  387 (445)
T 4b4t_P          382 DLVNQG  387 (445)
T ss_dssp             HHHHHT
T ss_pred             HHHHCC
Confidence            887654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=82.37  E-value=7.2  Score=33.65  Aligned_cols=112  Identities=9%  Similarity=-0.028  Sum_probs=59.6

Q ss_pred             HHhHHHhcCCHHHHHHHHhhcC-----CCCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH-HHHH
Q 039873          378 LINMYAKGGNIEAANKVFSDMR-----YRDI-------ITWNAMICGYSHHGLGREALTLFQNMLAAE-ERPNHV-TFVG  443 (709)
Q Consensus       378 li~~y~~~g~~~~A~~~f~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~-t~~~  443 (709)
                      -+..+...|.++.|.-+.+.+.     .+++       .+...+..++...|++.+|...|++.++.. .-|... +..+
T Consensus        26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~  105 (167)
T 3ffl_A           26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS  105 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            3566667788888877766543     2332       144556677777888888888888764321 111111 1111


Q ss_pred             HHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 039873          444 VLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVK  503 (709)
Q Consensus       444 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  503 (709)
                      +-    ......          ......++.+.---+...|.+.|++++|+.+++.+|.+
T Consensus       106 ~~----~~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k  151 (167)
T 3ffl_A          106 TG----NSASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR  151 (167)
T ss_dssp             -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred             cc----ccCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence            10    000000          00122233444444677788888888888888888754

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=82.05  E-value=14  Score=28.54  Aligned_cols=78  Identities=8%  Similarity=-0.019  Sum_probs=57.0

Q ss_pred             CcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 039873          251 DLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEY  330 (709)
Q Consensus       251 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  330 (709)
                      .-++|..|-+.+...+.  ...+--.-+..+...|++++|..+.+.+..||++.|-++-.+  +.|..+++..-+.++..
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~   97 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR   97 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence            45667777666666653  333433445567789999999999999999999999888664  66777777777777766


Q ss_pred             CC
Q 039873          331 EA  332 (709)
Q Consensus       331 ~g  332 (709)
                      +|
T Consensus        98 sg   99 (116)
T 2p58_C           98 SQ   99 (116)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=81.44  E-value=11  Score=31.24  Aligned_cols=46  Identities=11%  Similarity=0.009  Sum_probs=23.9

Q ss_pred             hHHHHHHHHHHhcCCC-CchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          523 GFGRRIAEYILHMDPN-DVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       523 ~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      .+|+.+++.+.+.+|. ......-|+-++.+.|++++|++..+.+.+
T Consensus        60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            3455555555554442 233444555555566666666555555543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=81.10  E-value=4.2  Score=34.43  Aligned_cols=53  Identities=8%  Similarity=-0.137  Sum_probs=42.7

Q ss_pred             cCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCC
Q 039873          519 HQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKV  571 (709)
Q Consensus       519 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  571 (709)
                      .+|.++|.++|+.++.+...-+..+...+.--.++|+...|++++......+.
T Consensus        73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence            37899999999999877544456666777777899999999999999887554

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=81.07  E-value=42  Score=32.53  Aligned_cols=168  Identities=8%  Similarity=0.038  Sum_probs=91.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHH----HHHHHhCCCCCCccchHHHHHHHhc
Q 039873          274 NSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNL----FCGMEYEAIRPNEFTFAVMLNSAAG  349 (709)
Q Consensus       274 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~t~~~ll~~~~~  349 (709)
                      +.++..=|.+.+++++|.+++..-           ...+.+.|+...|-++    .+-..+.++++|..+...++..+..
T Consensus        36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~  104 (312)
T 2wpv_A           36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE  104 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            445555677778888887775432           2234445555444443    3333345666666666656555544


Q ss_pred             cCChh-HHHHHHHHHH----HhC--CCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc---CCh
Q 039873          350 LSALR-HGDLLHAHIE----KSG--FKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHH---GLG  419 (709)
Q Consensus       350 ~~~~~-~a~~i~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~---g~~  419 (709)
                      ...-+ .-..+...++    +.|  -.-|+.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+...   |..
T Consensus       105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~  184 (312)
T 2wpv_A          105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED  184 (312)
T ss_dssp             CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred             CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence            32111 1123333333    332  2246778888999999999999999887633323455555555444443   433


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 039873          420 REALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQ  467 (709)
Q Consensus       420 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  467 (709)
                      .++--              ..-..+| -+.-.|++..|..+|+...++
T Consensus       185 ~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~  217 (312)
T 2wpv_A          185 STVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER  217 (312)
T ss_dssp             HHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred             chHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence            33211              1112222 234567888888888876554

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=80.21  E-value=46  Score=32.51  Aligned_cols=166  Identities=13%  Similarity=0.092  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHH----HHHHhCCCCCChhhHHHHHHHHhc
Q 039873          173 RNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVL----GKMVSGSVRWDSVTYVNAFGLSAS  248 (709)
Q Consensus       173 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~  248 (709)
                      +.++..=|.+.+++++|.+++-.           -...+.+.|+...|-++-    +.+.+.++++|..+...++..+..
T Consensus        38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~  106 (336)
T 3lpz_A           38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL  106 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            44455667788888888887643           234566677776665554    555567888888888888887776


Q ss_pred             CCCcH-HHHHHHHHHH----HcC--CCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHH
Q 039873          249 LKDLK-LGLQVHSQML----KSD--IEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEA  321 (709)
Q Consensus       249 ~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A  321 (709)
                      ...-+ .-..+...++    +.|  -.-|......+...|.+.+++.+|+.-|---..+.+..+..|+.-+.+.+...++
T Consensus       107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~  186 (336)
T 3lpz_A          107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA  186 (336)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred             CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence            65422 1223333333    333  2346777888889999999999998888432222235554444444444332222


Q ss_pred             HHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHH
Q 039873          322 LNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIE  364 (709)
Q Consensus       322 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~  364 (709)
                      --              +.-..+| -|...+++..|..++....
T Consensus       187 dl--------------fiaRaVL-~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          187 PL--------------YCARAVL-PYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             HH--------------HHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred             HH--------------HHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence            21              1222222 2344567777766655544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=80.09  E-value=4  Score=41.52  Aligned_cols=68  Identities=12%  Similarity=-0.002  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh-----CCCccCCc
Q 039873          509 WHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV-----RKVKKEPG  576 (709)
Q Consensus       509 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~  576 (709)
                      ...++.++...|+++++...+..+...+|-+...+..|+.+|.++|+..+|.+.|+...+     -|+.|.|.
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~  246 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  246 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            345666777889999999999999999998888999999999999999999999888764     37766553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	709
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.86
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.5
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.96
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.84
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.84
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.83
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.83
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.78
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.77
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.71
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.68
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.49
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.36
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.34
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.26
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.21
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.21
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.2
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.18
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.15
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.07
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.06
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.06
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.99
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.96
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.94
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.84
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.82
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.79
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.78
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.74
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.69
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.66
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.65
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.65
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.64
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.58
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.51
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.51
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.49
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.4
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.24
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.21
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.0
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.99
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.97
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.85
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.8
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.53
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.49
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.31
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.99
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	95.81
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	91.63
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	91.53
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	90.84
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	90.38
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	89.19
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	84.24
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	83.81

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.9e-19  Score=186.23  Aligned_cols=344  Identities=10%  Similarity=0.051  Sum_probs=228.1

Q ss_pred             cHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 039873          203 EYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYG  282 (709)
Q Consensus       203 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~  282 (709)
                      .|..+...|.+.|++++|+..|++..+... -+..++..+...+...|++++|...+....+.. +.+..........+.
T Consensus        35 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~  112 (388)
T d1w3ba_          35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALV  112 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhccccccccccccccccc-ccccccccccccccc
Confidence            344444444444444444444444443211 122344444444444455555554444444433 222222222233333


Q ss_pred             hcCChHHHHHHHHhcc---CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-ccchHHHHHHHhccCChhHHHH
Q 039873          283 KCGKFSNAKKVFEGLE---TRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN-EFTFAVMLNSAAGLSALRHGDL  358 (709)
Q Consensus       283 ~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~  358 (709)
                      ..+....+........   ......+..........+....+...+.+....  .|+ ...+..+...+...+..+.|..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~  190 (388)
T d1w3ba_         113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIH  190 (388)
T ss_dssp             HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc--CcchhHHHHhhcccccccCcHHHHHH
Confidence            3333333322222211   123333444444555555666666665555443  232 3344445555666677777777


Q ss_pred             HHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 039873          359 LHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEER  435 (709)
Q Consensus       359 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  435 (709)
                      .+..+++.. +.+...+..+...|...|++++|...|++..   ..+...|..+...|.+.|++++|++.|++..+  +.
T Consensus       191 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~  267 (388)
T d1w3ba_         191 HFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQ  267 (388)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TC
T ss_pred             HHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence            776666654 4456677778888888899999988888765   34667788888999999999999999999988  45


Q ss_pred             CC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-HHHHHHH
Q 039873          436 PN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS-TPVKWD-VVAWHTL  512 (709)
Q Consensus       436 pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~pd-~~~~~~l  512 (709)
                      |+ ..++..+...+...|++++|.+.++.....  .+.+...+..+...|.+.|++++|.+.+++ +.+.|+ ..+|..+
T Consensus       268 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  345 (388)
T d1w3ba_         268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL  345 (388)
T ss_dssp             SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            65 568888889999999999999999988663  345667888999999999999999999985 455666 7788889


Q ss_pred             HHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCC
Q 039873          513 LNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKR  555 (709)
Q Consensus       513 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  555 (709)
                      ...+...|++++|+..++++++++|+++.+|..|+.+|.+.|+
T Consensus       346 a~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999988875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.7e-18  Score=177.28  Aligned_cols=354  Identities=11%  Similarity=0.027  Sum_probs=288.0

Q ss_pred             HHHHHHhCCCccHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 039873          207 VLNGLIENECFRGGVEVLGKMVSGSVRW-DSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCG  285 (709)
Q Consensus       207 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g  285 (709)
                      +...+.+.|++++|++.|+++.+.  .| +...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence            345677889999999999999875  34 45678888889999999999999999999875 556788999999999999


Q ss_pred             ChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHH
Q 039873          286 KFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAH  362 (709)
Q Consensus       286 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~  362 (709)
                      ++++|...+.....   .+...+..........+....+........... ..+..............+....+......
T Consensus        82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence            99999999988765   344555555666666777777776666655443 22333344445555666777777777777


Q ss_pred             HHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 039873          363 IEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV  439 (709)
Q Consensus       363 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~  439 (709)
                      ..... +.+...+..+...+...|+.++|...+++..   ..+..+|..+...+...|++++|+..|++....+ ..+..
T Consensus       161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  238 (388)
T d1w3ba_         161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV  238 (388)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred             hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence            76654 4566778888999999999999999998765   3456789999999999999999999999998853 44566


Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 039873          440 TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-P-VKWDVVAWHTLLNASR  517 (709)
Q Consensus       440 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~pd~~~~~~ll~~~~  517 (709)
                      .+..+...+.+.|++++|...|+.+.+.  .+-+...+..+...|.+.|++++|.+.++.. . ...+...+..+...+.
T Consensus       239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            7888888999999999999999998763  2334678899999999999999999998743 1 2345888899999999


Q ss_pred             hcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          518 VHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       518 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ..|++++|+..+++++++.|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.8e-12  Score=129.82  Aligned_cols=217  Identities=12%  Similarity=0.017  Sum_probs=147.5

Q ss_pred             ccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHH
Q 039873          349 GLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTL  425 (709)
Q Consensus       349 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~  425 (709)
                      +.|++++|...++.+++.. +.+...+..+...|...|++++|...|.+..   ..+...|..+...|...|++++|++.
T Consensus        31 ~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  109 (323)
T d1fcha_          31 QEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEI  109 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccc
Confidence            3344444444444443332 2233444445555555555555555555433   12344555555555666666666666


Q ss_pred             HHHHHHCCCCCCHH----------------HHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC
Q 039873          426 FQNMLAAEERPNHV----------------TFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGL  489 (709)
Q Consensus       426 ~~~m~~~g~~pd~~----------------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  489 (709)
                      +++....  .|+..                .....+..+...+...++...+....+..+..++...+..+...+.+.|+
T Consensus       110 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~  187 (323)
T d1fcha_         110 LRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE  187 (323)
T ss_dssp             HHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence            6555542  22210                11112223344567788888888887655555667788899999999999


Q ss_pred             HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHH
Q 039873          490 LDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMK  567 (709)
Q Consensus       490 ~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  567 (709)
                      +++|...+++. ...|+ ..+|..+...+...|++++|++.++++++++|+++.++..++.+|.+.|++++|.+.|++..
T Consensus       188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  267 (323)
T d1fcha_         188 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL  267 (323)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999998753 33454 88899999999999999999999999999999999999999999999999999999999987


Q ss_pred             h
Q 039873          568 V  568 (709)
Q Consensus       568 ~  568 (709)
                      +
T Consensus       268 ~  268 (323)
T d1fcha_         268 N  268 (323)
T ss_dssp             H
T ss_pred             H
Confidence            6

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.4e-11  Score=123.03  Aligned_cols=263  Identities=11%  Similarity=-0.031  Sum_probs=173.5

Q ss_pred             HHHHHHhcCChHHHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-ccchHHHHHHHhccCC
Q 039873          277 MISMYGKCGKFSNAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPN-EFTFAVMLNSAAGLSA  352 (709)
Q Consensus       277 li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~  352 (709)
                      ....|.+.|++++|...|+++.+   .+..+|..+...|...|++++|+..|.+..+.  .|+ ...+..+...+...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--cccccccccccccccccccc
Confidence            45567777888888888877654   24567777778888888888888888777653  333 3445555566666777


Q ss_pred             hhHHHHHHHHHHHhCCCCChhH-HhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039873          353 LRHGDLLHAHIEKSGFKEHLIV-GNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLA  431 (709)
Q Consensus       353 ~~~a~~i~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  431 (709)
                      ++.|.+.+..+.+..  |+... ........ .               ..+.......+..+...+...+|.+.|.+...
T Consensus       103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  164 (323)
T d1fcha_         103 QRQACEILRDWLRYT--PAYAHLVTPAEEGA-G---------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVR  164 (323)
T ss_dssp             HHHHHHHHHHHHHTS--TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhc--cchHHHHHhhhhhh-h---------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            777777666666532  11111 00000000 0               00111111122334455667888888888876


Q ss_pred             CC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHH
Q 039873          432 AE-ERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVA  508 (709)
Q Consensus       432 ~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~  508 (709)
                      .. -.++...+..+...+...|++++|...++......  +-+...|..+...|.+.|++++|.+.|++. ...|+ ..+
T Consensus       165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  242 (323)
T d1fcha_         165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS  242 (323)
T ss_dssp             HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence            32 12345677788888899999999999999987642  234678889999999999999999998753 34555 788


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhH-----------HHHHHHhhhcCCchhHHH
Q 039873          509 WHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTY-----------ILLSNMYAKEKRWDGVSK  561 (709)
Q Consensus       509 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-----------~~l~~~~~~~g~~~~a~~  561 (709)
                      |..+..+|...|++++|+..++++++++|++...+           ..+..++...|+++.+..
T Consensus       243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999988765433           445556666677665543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=1.1e-07  Score=94.85  Aligned_cols=193  Identities=11%  Similarity=-0.003  Sum_probs=134.0

Q ss_pred             hHHHhHHHhcCCHHHHHHHHhhcC-------CC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----CCHHH
Q 039873          376 NALINMYAKGGNIEAANKVFSDMR-------YR----DIITWNAMICGYSHHGLGREALTLFQNMLAAEER----PNHVT  440 (709)
Q Consensus       376 ~~li~~y~~~g~~~~A~~~f~~~~-------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----pd~~t  440 (709)
                      ..+...|...|++..|...+....       .+    ....+..+...+...|+++.+...+.+.......    ....+
T Consensus        95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  174 (366)
T d1hz4a_          95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  174 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence            444556666777777766665432       11    1124555667788888888888888887763211    22345


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHH
Q 039873          441 FVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-----LEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-----DVVAW  509 (709)
Q Consensus       441 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----d~~~~  509 (709)
                      +......+...+...++...+........-..+     ...+..+...+...|++++|.+.++.. ...|     ....+
T Consensus       175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  254 (366)
T d1hz4a_         175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  254 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence            555556677788888888887776553332222     234566677888999999999998754 2221     24566


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhc------CCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          510 HTLLNASRVHQNYGFGRRIAEYILHM------DPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       510 ~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ..+...+...|+++.|...+++++..      .|.....+..++.+|...|++++|.+.+++..+
T Consensus       255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            67788899999999999999988743      355567888999999999999999999998764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=1.4e-07  Score=92.68  Aligned_cols=185  Identities=8%  Similarity=0.003  Sum_probs=141.0

Q ss_pred             ChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC--C-C-hhhHHHHHHHHHHcCChHHHHHHHH
Q 039873          352 ALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY--R-D-IITWNAMICGYSHHGLGREALTLFQ  427 (709)
Q Consensus       352 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~  427 (709)
                      ..+.+..+++..++...+.+...+..++..+.+.|+++.|..+|+++..  | + ...|...+..+.+.|+.++|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            4567788888888765566777888888889999999999999988653  2 3 3478889999999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHH-HHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CC
Q 039873          428 NMLAAEERPNHVTFVGVLS-ACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST----PV  502 (709)
Q Consensus       428 ~m~~~g~~pd~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~  502 (709)
                      ++.+.+. .+...|..... -+...|+.+.|..+|+.+.+..  +.+...|...++.+.+.|++++|+.+|++.    +.
T Consensus       159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            9887542 23333333322 2344678999999999988753  334668888999999999999999998753    33


Q ss_pred             CCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 039873          503 KWD--VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPND  539 (709)
Q Consensus       503 ~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  539 (709)
                      .|+  ...|...+.--..+|+.+.+..+.+++.+.-|.+
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            443  5688888888888999999999999888877755

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=2.1e-08  Score=95.74  Aligned_cols=198  Identities=11%  Similarity=-0.088  Sum_probs=115.9

Q ss_pred             hHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHc
Q 039873          340 FAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHH  416 (709)
Q Consensus       340 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~  416 (709)
                      +..+...+.+.|+++.|...+..+++.. +.+..+++.+..+|.+.|++++|...|+++.+   .+..+|..+...|...
T Consensus        40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  118 (259)
T d1xnfa_          40 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG  118 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHH
Confidence            3344445555666666666666666553 44566777777888888888888888887652   3456778888888888


Q ss_pred             CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC----HH
Q 039873          417 GLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGL----LD  491 (709)
Q Consensus       417 g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----~~  491 (709)
                      |++++|++.|++..+.  .|+ ......+..+..+.+..+....+......   ..+....++ ++..+.....    .+
T Consensus       119 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~  192 (259)
T d1xnfa_         119 GRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLME  192 (259)
T ss_dssp             TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred             hhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHHH
Confidence            8888888888888774  343 33333333344444444444444443322   222222222 2222222111    22


Q ss_pred             HHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHH
Q 039873          492 EAEKFMRS-TPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYI  544 (709)
Q Consensus       492 ~A~~~~~~-~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  544 (709)
                      .+...+.. ....|+ ..+|..+...+...|++++|...++++++.+|++...|.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  247 (259)
T d1xnfa_         193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR  247 (259)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred             HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            22222110 011122 345666777888889999999999999998888765544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=2.8e-07  Score=91.86  Aligned_cols=287  Identities=8%  Similarity=-0.049  Sum_probs=147.7

Q ss_pred             HHhcCCCcHHHHHHHHHHHHcCCCCc----hHHHHHHHHHHHhcCChHHHHHHHHhccC-----CC----HhhHHHHHHH
Q 039873          245 LSASLKDLKLGLQVHSQMLKSDIEPD----VFINSAMISMYGKCGKFSNAKKVFEGLET-----RN----VVLWTAMVAA  311 (709)
Q Consensus       245 ~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~  311 (709)
                      .+...|++++|.++++..++..-..+    ..+++.+...|...|++++|...|++..+     ++    ..++..+...
T Consensus        21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  100 (366)
T d1hz4a_          21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI  100 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            34566677777777666665431111    23445555666666666666666665432     11    1234444455


Q ss_pred             HHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCC---ChhHHhHHHhHHHhcCCH
Q 039873          312 CFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKE---HLIVGNALINMYAKGGNI  388 (709)
Q Consensus       312 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~---~~~~~~~li~~y~~~g~~  388 (709)
                      +...|++..+...+.+.....                               ...+...   ....+..+...|...|++
T Consensus       101 ~~~~~~~~~a~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~~~~~  149 (366)
T d1hz4a_         101 LFAQGFLQTAWETQEKAFQLI-------------------------------NEQHLEQLPMHEFLVRIRAQLLWAWARL  149 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-------------------------------HhcccchhhHHHHHHHHHHHHHHHhcch
Confidence            556666666666555543210                               0001010   011233344555556666


Q ss_pred             HHHHHHHhhcCC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccccH
Q 039873          389 EAANKVFSDMRY--------RDIITWNAMICGYSHHGLGREALTLFQNMLAA----EERPN--HVTFVGVLSACGHLGLV  454 (709)
Q Consensus       389 ~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd--~~t~~~ll~a~~~~g~~  454 (709)
                      +.+...+.....        ....++..+...+...+...++...+.+....    +..+.  ...+......+...|++
T Consensus       150 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (366)
T d1hz4a_         150 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK  229 (366)
T ss_dssp             HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccH
Confidence            666555554331        11233444455556666666666666554431    11111  11333444455666777


Q ss_pred             HHHHHHHHHHHHhhCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCchH
Q 039873          455 QEGFYYLNHLMKQIGIVP--GLEHYTCIVGLLSKAGLLDEAEKFMRST-------PVKWD-VVAWHTLLNASRVHQNYGF  524 (709)
Q Consensus       455 ~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~pd-~~~~~~ll~~~~~~g~~~~  524 (709)
                      ++|...+........-.+  ....+..+...|...|++++|.+.+++.       +..|+ ..+|..+...+...|++++
T Consensus       230 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  309 (366)
T d1hz4a_         230 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD  309 (366)
T ss_dssp             HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHH
Confidence            777766665432111111  1234455666777777777777765532       33333 4456666677778888888


Q ss_pred             HHHHHHHHHhcCCC---------CchhHHHHHHHhhhcCCchhHHHH
Q 039873          525 GRRIAEYILHMDPN---------DVGTYILLSNMYAKEKRWDGVSKI  562 (709)
Q Consensus       525 a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~  562 (709)
                      |.+.+++++++.+.         ....+..++..+...++.+++.+-
T Consensus       310 A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         310 AQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            88888877765321         112334455556666777777553

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.3e-08  Score=97.39  Aligned_cols=190  Identities=8%  Similarity=0.083  Sum_probs=115.6

Q ss_pred             HHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 039873          374 VGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGL-GREALTLFQNMLAAEERPN-HVTFVGVLSAC  448 (709)
Q Consensus       374 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~  448 (709)
                      +++.+...+.+.+..++|+.+++++.+   .+...|+.....+...|+ +++|++.+++..+  +.|+ ..+|......+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHHH
Confidence            344445556666666777777766652   244566666666666553 6777777777666  3443 44666666666


Q ss_pred             hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-----
Q 039873          449 GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQN-----  521 (709)
Q Consensus       449 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~-----  521 (709)
                      .+.|++++|+..+..+++.  -+.+...|..+...+.+.|++++|++.+++. .+.| +...|+.+...+...+.     
T Consensus       123 ~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence            6677777777777766542  1223556666777777777777777766543 2233 35666655555444443     


Q ss_pred             -chHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          522 -YGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       522 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                       +++|.+.+.++++++|++...+..+..+|...| .+++.+.++...+
T Consensus       201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~  247 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD  247 (315)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence             456777777777777777777776666665544 4666666665554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.1e-07  Score=91.40  Aligned_cols=133  Identities=11%  Similarity=-0.004  Sum_probs=56.0

Q ss_pred             hccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCC------
Q 039873          348 AGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGL------  418 (709)
Q Consensus       348 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~------  418 (709)
                      ...|+.++|...+..+++.. +.+..+|+.+...|.+.|++++|...|+++.+   .+..+|+.+...+.+.+.      
T Consensus       123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~  201 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV  201 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhh
Confidence            33333333333333333332 22334444444444444444444444444431   233444444444333332      


Q ss_pred             hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873          419 GREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL  484 (709)
Q Consensus       419 ~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  484 (709)
                      .++|++.+.+..+.  .| |...|..+...+...| .+++.+.++...+......+...+..+++.|
T Consensus       202 ~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y  265 (315)
T d2h6fa1         202 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY  265 (315)
T ss_dssp             HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             hHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence            35566666665552  34 3344444444443333 3445555554433222222233444444444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=7e-09  Score=103.57  Aligned_cols=228  Identities=8%  Similarity=-0.059  Sum_probs=157.5

Q ss_pred             HcCCHhHHHHHHHHHHhCCCCCCc-cchHHHHHHHhccC--ChhHHHHHHHHHHHhCCCCChhHH-hHHHhHHHhcCCHH
Q 039873          314 QNEYFEEALNLFCGMEYEAIRPNE-FTFAVMLNSAAGLS--ALRHGDLLHAHIEKSGFKEHLIVG-NALINMYAKGGNIE  389 (709)
Q Consensus       314 ~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~  389 (709)
                      ..|.+++|+.++++..+.  .|+. ..+.....++...+  +.+.+...+..+++.. +.+...+ ..+...+...|..+
T Consensus        85 ~~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~  161 (334)
T d1dcea1          85 SAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA  161 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence            344566777777777653  3433 33344444444433  4677777777777764 2334433 34556777889999


Q ss_pred             HHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 039873          390 AANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMK  466 (709)
Q Consensus       390 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  466 (709)
                      +|...++.+..   .|..+|+.+...+.+.|++++|...+++...  +.|+...   +...+...+..+++...+.....
T Consensus       162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~---~~~~~~~l~~~~~a~~~~~~~l~  236 (334)
T d1dcea1         162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKELE---LVQNAFFTDPNDQSAWFYHRWLL  236 (334)
T ss_dssp             HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHHH---HHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHHH---HHHHHHHhcchhHHHHHHHHHHH
Confidence            99999998874   3667899899999999998888777665554  2333222   22334455666677777777654


Q ss_pred             hhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHH
Q 039873          467 QIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYI  544 (709)
Q Consensus       467 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  544 (709)
                        .-.++...+..+...+...|+.++|.+.+.+. ...|+ ..+|..+...+...|++++|.+.++++++++|.+...|.
T Consensus       237 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~  314 (334)
T d1dcea1         237 --GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  314 (334)
T ss_dssp             --SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             --hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence              23344455667778888889999999988754 44454 677788888999999999999999999999999888888


Q ss_pred             HHHHHhh
Q 039873          545 LLSNMYA  551 (709)
Q Consensus       545 ~l~~~~~  551 (709)
                      .|...+.
T Consensus       315 ~L~~~~~  321 (334)
T d1dcea1         315 DLRSKFL  321 (334)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7877665

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=7.1e-08  Score=91.97  Aligned_cols=192  Identities=13%  Similarity=-0.054  Sum_probs=135.2

Q ss_pred             hHHhHHHhHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 039873          373 IVGNALINMYAKGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSAC  448 (709)
Q Consensus       373 ~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~  448 (709)
                      .++..+...|.+.|++++|...|++..   ..++.+|+.+..+|.+.|++++|++.|++..+  +.|+ ..++..+..++
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHH
Confidence            456677889999999999999999876   35778999999999999999999999999998  4564 56788888999


Q ss_pred             hccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh----cCCch
Q 039873          449 GHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTP-VKWDVVAWHTLLNASRV----HQNYG  523 (709)
Q Consensus       449 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~pd~~~~~~ll~~~~~----~g~~~  523 (709)
                      ...|++++|...|+...+..  +.+......+...+.+.+..+.+..+..... ..++...++. +..+..    .+..+
T Consensus       116 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  192 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLME  192 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHHH
Confidence            99999999999999987642  2234444444455556665555544433211 1122222222 111111    12233


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          524 FGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       524 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      .+...+.......|....+|..|+.+|...|++++|.+.++.....
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            3333344444455666678889999999999999999999998764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=1.8e-06  Score=84.39  Aligned_cols=165  Identities=13%  Similarity=0.079  Sum_probs=65.8

Q ss_pred             CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHh
Q 039873          301 NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALIN  380 (709)
Q Consensus       301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~  380 (709)
                      +...|...+..+.+.|+.++|..+|+++...........|...+..+.+.++.+.|++++..+++.+ +.+...+.....
T Consensus        98 ~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~  176 (308)
T d2onda1          98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL  176 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence            3344555555555555555555555555432111111223344444444444444444444444332 112222222222


Q ss_pred             H-HHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhcccc
Q 039873          381 M-YAKGGNIEAANKVFSDMRY---RDIITWNAMICGYSHHGLGREALTLFQNMLAAE-ERPN--HVTFVGVLSACGHLGL  453 (709)
Q Consensus       381 ~-y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd--~~t~~~ll~a~~~~g~  453 (709)
                      . +...|+.+.|..+|+.+.+   .+...|...+..+...|+.++|..+|++..... ..|+  ...|...+.--...|+
T Consensus       177 ~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~  256 (308)
T d2onda1         177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD  256 (308)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred             HHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC
Confidence            1 1223444444444444331   233344444444444444444444444443321 2221  1233333333333444


Q ss_pred             HHHHHHHHHHHHH
Q 039873          454 VQEGFYYLNHLMK  466 (709)
Q Consensus       454 ~~~a~~~~~~~~~  466 (709)
                      .+.+..+++.+.+
T Consensus       257 ~~~~~~~~~r~~~  269 (308)
T d2onda1         257 LASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=6e-07  Score=89.07  Aligned_cols=218  Identities=11%  Similarity=0.003  Sum_probs=139.5

Q ss_pred             hCCCccHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhcCC--CcHHHHHHHHHHHHcCCCCchHHHH-HHHHHHHhcCChH
Q 039873          213 ENECFRGGVEVLGKMVSGSVRW-DSVTYVNAFGLSASLK--DLKLGLQVHSQMLKSDIEPDVFINS-AMISMYGKCGKFS  288 (709)
Q Consensus       213 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~  288 (709)
                      ..|.+++|+.+++...+.  .| +...+.....++...+  +.+++...+..+++.. +++...+. .+...+...+..+
T Consensus        85 ~~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~  161 (334)
T d1dcea1          85 SAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA  161 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence            344567788888887764  33 3334555555554444  4678888888887764 33444443 4446777788899


Q ss_pred             HHHHHHHhccC---CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHH
Q 039873          289 NAKKVFEGLET---RNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEK  365 (709)
Q Consensus       289 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~  365 (709)
                      +|...++....   .+..+|+.+...+.+.|++++|...+.+....  .|+.   ......+...+..+.+...+.....
T Consensus       162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~  236 (334)
T d1dcea1         162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL  236 (334)
T ss_dssp             HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH
Confidence            99999988775   35678888888888888888776554433221  1111   1222333445555666666666555


Q ss_pred             hCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 039873          366 SGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDI---ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTF  441 (709)
Q Consensus       366 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~  441 (709)
                      .. +++...+..+...+...|+.++|...|.+..+.++   .+|..+...|...|+.++|++.|++..+  +.|+...|
T Consensus       237 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y  312 (334)
T d1dcea1         237 GR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAY  312 (334)
T ss_dssp             SC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHH
T ss_pred             hC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHH
Confidence            43 34455566666777777788888887777765443   4666677777777788888888887777  56765443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=6.1e-06  Score=73.99  Aligned_cols=139  Identities=10%  Similarity=-0.037  Sum_probs=100.9

Q ss_pred             hHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHH
Q 039873          380 NMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGF  458 (709)
Q Consensus       380 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~  458 (709)
                      ..+...|+++.|.+.|.++..++...|..+...|...|++++|++.|++.++  +.|+ ...|..+..++.+.|++++|.
T Consensus        13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHHH
Confidence            4567789999999999999888888999999999999999999999999988  4554 568888888899999999999


Q ss_pred             HHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 039873          459 YYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDP  537 (709)
Q Consensus       459 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  537 (709)
                      ..|++....  .+++...      .|...           ....+++ ..++..+..++...|++++|.+.+++++++.|
T Consensus        91 ~~~~kAl~~--~~~n~~~------~~~~~-----------~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_          91 KDLKEALIQ--LRGNQLI------DYKIL-----------GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             HHHHHHHHT--TTTCSEE------ECGGG-----------TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHh--CccCchH------HHHHh-----------hhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            999887652  1111000      00000           0001111 23455566677888888888888888888877


Q ss_pred             CC
Q 039873          538 ND  539 (709)
Q Consensus       538 ~~  539 (709)
                      +.
T Consensus       152 ~~  153 (192)
T d1hh8a_         152 EP  153 (192)
T ss_dssp             SG
T ss_pred             Cc
Confidence            64

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=1.1e-06  Score=79.85  Aligned_cols=96  Identities=10%  Similarity=-0.080  Sum_probs=53.5

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh
Q 039873          473 GLEHYTCIVGLLSKAGLLDEAEKFMRS-TPVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY  550 (709)
Q Consensus       473 ~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  550 (709)
                      +...+......|.+.|++++|++.|++ +.+.| ++..|..+..+|...|+++.|+..++++++++|+++.+|..++.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            333344444555555555555555542 22223 2555555555666666666666666666666666666666666666


Q ss_pred             hhcCCchhHHHHHHHHHh
Q 039873          551 AKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       551 ~~~g~~~~a~~~~~~m~~  568 (709)
                      ...|++++|...++...+
T Consensus        83 ~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            666666666666665543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.9e-06  Score=69.21  Aligned_cols=90  Identities=10%  Similarity=0.004  Sum_probs=70.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCch
Q 039873          480 IVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWD  557 (709)
Q Consensus       480 li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  557 (709)
                      -...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence            345667778888888877643 2234 47778888888888888888888888888888888888888888888888888


Q ss_pred             hHHHHHHHHHhC
Q 039873          558 GVSKIRKLMKVR  569 (709)
Q Consensus       558 ~a~~~~~~m~~~  569 (709)
                      +|...++...+.
T Consensus        89 ~A~~~~~~a~~~  100 (117)
T d1elwa_          89 EAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            888888888753

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.21  E-value=1.6e-06  Score=70.10  Aligned_cols=88  Identities=15%  Similarity=0.063  Sum_probs=77.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCc
Q 039873          479 CIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRW  556 (709)
Q Consensus       479 ~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  556 (709)
                      .+...+.+.|++++|...|++. ...|+ ..+|..+...+...|++++|+..++++++++|+++.++..|+..|...|++
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence            3456678889999998888754 33454 889999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHH
Q 039873          557 DGVSKIRKLM  566 (709)
Q Consensus       557 ~~a~~~~~~m  566 (709)
                      ++|.+.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=1.1e-05  Score=77.74  Aligned_cols=190  Identities=9%  Similarity=-0.064  Sum_probs=129.4

Q ss_pred             HHHhHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHH
Q 039873          377 ALINMYAKGGNIEAANKVFSDMRY-----RD----IITWNAMICGYSHHGLGREALTLFQNMLAAEE---RPN--HVTFV  442 (709)
Q Consensus       377 ~li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~pd--~~t~~  442 (709)
                      ...+.|...|++++|.+.|.+..+     .|    ..+|+.+...|.+.|++++|++.+++....-.   .+.  ..++.
T Consensus        42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  121 (290)
T d1qqea_          42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF  121 (290)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence            345678899999999999887652     12    35788899999999999999999998665211   111  33555


Q ss_pred             HHHHHHh-ccccHHHHHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC--------HHH
Q 039873          443 GVLSACG-HLGLVQEGFYYLNHLMKQIGIVPG----LEHYTCIVGLLSKAGLLDEAEKFMRSTP-VKWD--------VVA  508 (709)
Q Consensus       443 ~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~pd--------~~~  508 (709)
                      .+...+. ..|++++|.+.+....+......+    ..++..+...|.+.|++++|.+.+++.. ..|+        ...
T Consensus       122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~  201 (290)
T d1qqea_         122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY  201 (290)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence            6666664 469999999999987653222222    3457888999999999999999987531 1111        123


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch-----hHHHHHHHhhh--cCCchhHHHHHHHH
Q 039873          509 WHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG-----TYILLSNMYAK--EKRWDGVSKIRKLM  566 (709)
Q Consensus       509 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~m  566 (709)
                      +...+-.+...|+++.|...+++..+++|....     ....|+.+|..  .+++++|...|+.+
T Consensus       202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            344445667789999999999999999875332     33456666654  35678888777544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=7.8e-06  Score=66.50  Aligned_cols=104  Identities=15%  Similarity=0.009  Sum_probs=78.0

Q ss_pred             HHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCc
Q 039873          445 LSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNY  522 (709)
Q Consensus       445 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~  522 (709)
                      ...+...|++++|...|...++.  .+.+...|..+..+|.+.|++++|++.++.. .+.| +...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            34566677777777777777653  2334556777777888888888888776633 2234 588888899999999999


Q ss_pred             hHHHHHHHHHHhcCCCCchhHHHHHHHh
Q 039873          523 GFGRRIAEYILHMDPNDVGTYILLSNMY  550 (709)
Q Consensus       523 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~  550 (709)
                      ++|+..++++++++|+++..+..+.++-
T Consensus        88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            9999999999999999988777776654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=4.2e-06  Score=75.73  Aligned_cols=115  Identities=10%  Similarity=-0.150  Sum_probs=77.4

Q ss_pred             CCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-HHHHHHHH
Q 039873          436 PNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS-TPVKWD-VVAWHTLL  513 (709)
Q Consensus       436 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~pd-~~~~~~ll  513 (709)
                      |+...+......+.+.|++++|+..|..++..  .+.+...|..+..+|.+.|++++|++.|++ +.+.|+ ..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            55555666666777777777777777776553  123455677777777777777777777763 345565 66777788


Q ss_pred             HHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhh
Q 039873          514 NASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAK  552 (709)
Q Consensus       514 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  552 (709)
                      .++...|++++|+..++++++++|++...+...+..+..
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~  118 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR  118 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            888888888888888888888777655444444444433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=8.4e-06  Score=73.04  Aligned_cols=88  Identities=10%  Similarity=-0.017  Sum_probs=81.2

Q ss_pred             HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHH
Q 039873          481 VGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVS  560 (709)
Q Consensus       481 i~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~  560 (709)
                      ...+...|++++|++.|+++. .|++.+|..+...+...|++++|++.|+++++++|+++..|..++.+|.+.|++++|.
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence            455788999999999999874 6788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 039873          561 KIRKLMKVR  569 (709)
Q Consensus       561 ~~~~~m~~~  569 (709)
                      +.|++....
T Consensus        91 ~~~~kAl~~   99 (192)
T d1hh8a_          91 KDLKEALIQ   99 (192)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999988753

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.07  E-value=6e-05  Score=72.36  Aligned_cols=125  Identities=8%  Similarity=-0.014  Sum_probs=68.9

Q ss_pred             HHHHHHhCCCccHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHhcCCCcHHHHHHHHHHHHc----CC-CCchHHHHH
Q 039873          207 VLNGLIENECFRGGVEVLGKMVSG----SVRWD-SVTYVNAFGLSASLKDLKLGLQVHSQMLKS----DI-EPDVFINSA  276 (709)
Q Consensus       207 li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~  276 (709)
                      ....|-..|++++|++.|.+..+.    +-.++ ..+|..+..++.+.|++++|.+.+...++.    |. .....++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            345566666666666666665431    11111 235566666666677777776666655442    10 111234444


Q ss_pred             HHHHHHh-cCChHHHHHHHHhccC-----CC----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 039873          277 MISMYGK-CGKFSNAKKVFEGLET-----RN----VVLWTAMVAACFQNEYFEEALNLFCGMEYE  331 (709)
Q Consensus       277 li~~y~~-~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  331 (709)
                      +...|.. .|++++|...|++..+     .+    ..+|..+...|...|++++|++.|++....
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence            5555533 4777777777665432     11    234566666777777777777777776553

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=9.9e-06  Score=70.11  Aligned_cols=88  Identities=13%  Similarity=0.061  Sum_probs=54.0

Q ss_pred             HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchh
Q 039873          481 VGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDG  558 (709)
Q Consensus       481 i~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  558 (709)
                      ...|.+.|++++|+..|++. .+.|+ ...|..+...+...|++++|.+.++++++++|++..+|..++.+|...|++++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~e   96 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA   96 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHH
Confidence            34455666666666665532 22233 55666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHh
Q 039873          559 VSKIRKLMKV  568 (709)
Q Consensus       559 a~~~~~~m~~  568 (709)
                      |.+.+++...
T Consensus        97 A~~~~~~a~~  106 (159)
T d1a17a_          97 ALRDYETVVK  106 (159)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.3e-05  Score=67.71  Aligned_cols=115  Identities=7%  Similarity=-0.012  Sum_probs=84.2

Q ss_pred             HHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCch
Q 039873          446 SACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYG  523 (709)
Q Consensus       446 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~  523 (709)
                      ..+.+.|++++|...|..+++..  +-+...|..+..+|...|++++|.+.|++. .+.|+ ..+|..+..++...|+++
T Consensus        18 n~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence            45667777777777777776531  234567777777888888888888877643 33454 678999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHh--hhcCCchhHHHH
Q 039873          524 FGRRIAEYILHMDPNDVGTYILLSNMY--AKEKRWDGVSKI  562 (709)
Q Consensus       524 ~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~  562 (709)
                      +|...++++++++|+++..+..+..+.  ...+.++++...
T Consensus        96 eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          96 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999988777765553  344556666544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=5.1e-05  Score=66.20  Aligned_cols=133  Identities=13%  Similarity=0.057  Sum_probs=94.4

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 039873          405 TWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLL  484 (709)
Q Consensus       405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~  484 (709)
                      .+......+.+.|++++|++.|++.+..  -|....+         ..  .+. .....+.        ...|+.+..+|
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~---------~~--~~~-~~~~~~~--------~~~~~nla~~y   72 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF---------SN--EEA-QKAQALR--------LASHLNLAMCH   72 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC---------CS--HHH-HHHHHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcccc---------ch--HHH-hhhchhH--------HHHHHHHHHHH
Confidence            4455666788888888888888887763  1110000         00  000 0111111        12567788899


Q ss_pred             HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhH
Q 039873          485 SKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGV  559 (709)
Q Consensus       485 ~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  559 (709)
                      .+.|++++|++.++.. .+.| ++.+|..+..++...|++++|+..++++++++|+++.....+..+..+.+...+.
T Consensus        73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999987643 3456 5888999999999999999999999999999999999998888887776665544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.96  E-value=0.0015  Score=62.84  Aligned_cols=276  Identities=11%  Similarity=0.025  Sum_probs=141.8

Q ss_pred             chhHHHHHHHHHHccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhhhCCCCCCChhhHHHHHHHHh
Q 039873           67 NVVLTNSLVNLYAKCNQISIARQLFDNMRQRNVVSYSSLMTWYLHNGFLLETLKLFKNMVSGDNLEPNEYIFSIVLSSCS  146 (709)
Q Consensus        67 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~~~~  146 (709)
                      |..--....+.+.+.|.++.|..+|..+..     |..++..+.+.+++..|.+.+.+..       +..+|..+..+|.
T Consensus        13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~-------~~~~~k~~~~~l~   80 (336)
T d1b89a_          13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACV   80 (336)
T ss_dssp             ----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC-------CHHHHHHHHHHHH
Confidence            333344455666678888888888876654     7788888888888888888877653       5667888888887


Q ss_pred             cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHhCCCccHHHHH
Q 039873          147 RSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLP---GYDVFEYNSVLNGLIENECFRGGVEV  223 (709)
Q Consensus       147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l  223 (709)
                      .......+     .+.......++.....++..|-..|..++...+++...   ..+...++-++..|++.+ .++-++.
T Consensus        81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~  154 (336)
T d1b89a_          81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREH  154 (336)
T ss_dssp             HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHH
Confidence            66554433     22223333455555678888888888888888887543   345556778888887754 3343444


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHh
Q 039873          224 LGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVV  303 (709)
Q Consensus       224 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~  303 (709)
                      ++..-      +......++..|.+.+-++                      -++-.|.+.|++++|..+.-.=+ +++.
T Consensus       155 l~~~s------~~y~~~k~~~~c~~~~l~~----------------------elv~Ly~~~~~~~~A~~~~i~~~-~~~~  205 (336)
T d1b89a_         155 LELFW------SRVNIPKVLRAAEQAHLWA----------------------ELVFLYDKYEEYDNAIITMMNHP-TDAW  205 (336)
T ss_dssp             HHHHS------TTSCHHHHHHHHHTTTCHH----------------------HHHHHHHHTTCHHHHHHHHHHST-TTTC
T ss_pred             HHhcc------ccCCHHHHHHHHHHcCChH----------------------HHHHHHHhcCCHHHHHHHHHHcc-hhhh
Confidence            33321      1122333444444444333                      34445555666665554432211 1111


Q ss_pred             hHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCc-----------cchHHHHHHHhccCChhHHHHHHHHHHHhCCCCCh
Q 039873          304 LWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNE-----------FTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHL  372 (709)
Q Consensus       304 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-----------~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~  372 (709)
                      .....+..+.+..+.+...++.....+.  .|+.           ..-..++.-+.+.+++......+......|   +.
T Consensus       206 ~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~  280 (336)
T d1b89a_         206 KEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NK  280 (336)
T ss_dssp             CHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CH
T ss_pred             hHHHHHHHHHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hH
Confidence            1222333444444444333333322221  1211           112233444445555555556665554444   23


Q ss_pred             hHHhHHHhHHHhcCCHHHHHHH
Q 039873          373 IVGNALINMYAKGGNIEAANKV  394 (709)
Q Consensus       373 ~~~~~li~~y~~~g~~~~A~~~  394 (709)
                      .+.++|.+.|...++++.-++.
T Consensus       281 ~vn~al~~lyie~~d~~~l~~~  302 (336)
T d1b89a_         281 SVNESLNNLFITEEDYQALRTS  302 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCcchhHHHHHH
Confidence            5666777777777665443333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=3.6e-05  Score=62.76  Aligned_cols=106  Identities=8%  Similarity=-0.094  Sum_probs=78.0

Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 039873          442 VGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLL---DEAEKFMRST-PVKWDV---VAWHTLLN  514 (709)
Q Consensus       442 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~pd~---~~~~~ll~  514 (709)
                      ..+++.+...+++++|.+.|+.....  -+.+..++..+..++.+.++.   ++|++++++. ...|+.   .+|..|..
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            35667777888888888888887653  233456777788888775554   4588888764 333433   36778888


Q ss_pred             HHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039873          515 ASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNM  549 (709)
Q Consensus       515 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  549 (709)
                      +|...|++++|++.++++++++|++..+...+..+
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            99999999999999999999999987665554433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.84  E-value=0.0019  Score=60.43  Aligned_cols=230  Identities=10%  Similarity=-0.055  Sum_probs=129.6

Q ss_pred             CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHh
Q 039873          301 NVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALIN  380 (709)
Q Consensus       301 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~  380 (709)
                      |+..|..+...+.+.+++++|++.|++..+.|   |...+..+-..+...               .|+            
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G---------------~~~------------   50 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQG---------------QGV------------   50 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT---------------SSS------------
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC---------------CCc------------
Confidence            34566666667777788888888888776655   222222222222210               000            


Q ss_pred             HHHhcCCHHHHHHHHhhcCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--Hhcccc
Q 039873          381 MYAKGGNIEAANKVFSDMRY-RDIITWNAMICGYSH----HGLGREALTLFQNMLAAEERPNHVTFVGVLSA--CGHLGL  453 (709)
Q Consensus       381 ~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a--~~~~g~  453 (709)
                          ..+...|...+..... .+...+..+...+..    ..+.+.|...+++....|...... .......  ......
T Consensus        51 ----~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~-~l~~~~~~~~~~~~~  125 (265)
T d1ouva_          51 ----EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCA-SLGGIYHDGKVVTRD  125 (265)
T ss_dssp             ----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHCSSSCCC
T ss_pred             ----chhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHH-hhcccccCCCcccch
Confidence                2234444444443332 223333333333332    345667777777776655222111 1111111  122344


Q ss_pred             HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCchHH
Q 039873          454 VQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK----AGLLDEAEKFMRSTPVKWDVVAWHTLLNASRV----HQNYGFG  525 (709)
Q Consensus       454 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~a  525 (709)
                      ...+...+.....    ..+...+..|...|..    ..+...+...++...-..+..+...|...+..    ..+++.|
T Consensus       126 ~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A  201 (265)
T d1ouva_         126 FKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEA  201 (265)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred             hHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhh
Confidence            5566666555433    2345566666666664    34566666666543222356666556555544    5689999


Q ss_pred             HHHHHHHHhcCCCCchhHHHHHHHhhh----cCCchhHHHHHHHHHhCCC
Q 039873          526 RRIAEYILHMDPNDVGTYILLSNMYAK----EKRWDGVSKIRKLMKVRKV  571 (709)
Q Consensus       526 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~  571 (709)
                      +..++++.+.+  ++..+..|+.+|.+    ..+.++|.+.|++..+.|.
T Consensus       202 ~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         202 LARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             hhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            99999998886  45788889999876    4489999999999987764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.00017  Score=62.77  Aligned_cols=63  Identities=8%  Similarity=-0.061  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          507 VAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       507 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      .+|+.+..+|.+.|+++.|+..++++++++|+++.+|..++.+|...|++++|...++...+.
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            356677788999999999999999999999999999999999999999999999999998763

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.79  E-value=0.0003  Score=60.99  Aligned_cols=129  Identities=12%  Similarity=-0.014  Sum_probs=89.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHh
Q 039873          408 AMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVP-GLEHYTCIVGLLSK  486 (709)
Q Consensus       408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~  486 (709)
                      .....+...|++++|++.|++..+.            +..........+..          .+.| ....|..+..+|.+
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~----------~~~~~~~~~~~nla~~~~~   89 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA----------KLQPVALSCVLNIGACKLK   89 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG----------GGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH----------HhChhhHHHHHHHHHHHHh
Confidence            3455667778888888888776541            00000001111110          1112 23467778889999


Q ss_pred             cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchh
Q 039873          487 AGLLDEAEKFMRST-PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDG  558 (709)
Q Consensus       487 ~g~~~~A~~~~~~~-~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  558 (709)
                      .|++++|+..+++. .+.|+ +..|..+..++...|+++.|++.++++++++|++..++..|..++.+.....+
T Consensus        90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999988743 45565 88899999999999999999999999999999998888888777655444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.78  E-value=0.00017  Score=62.51  Aligned_cols=93  Identities=10%  Similarity=0.010  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhc
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKE  553 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  553 (709)
                      .|+.+..+|.+.|++++|++.++.. .+.| +..+|..+..++...|++++|+..++++++++|++..+...+..+....
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            5667888899999999999987743 2334 4888888999999999999999999999999999998888888887776


Q ss_pred             CCchh-HHHHHHHHHh
Q 039873          554 KRWDG-VSKIRKLMKV  568 (709)
Q Consensus       554 g~~~~-a~~~~~~m~~  568 (709)
                      +...+ ..+++..|-+
T Consensus       146 ~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         146 KEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHh
Confidence            65543 4555555543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.74  E-value=0.00028  Score=60.02  Aligned_cols=62  Identities=13%  Similarity=0.001  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          507 VAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       507 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      .+|..+..++.+.|+++.|++.++++++++|.+..+|..++.+|...|++++|...|+...+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            46677888889999999999999999999999999999999999999999999999998875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.69  E-value=0.00015  Score=63.05  Aligned_cols=64  Identities=9%  Similarity=-0.012  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      ...|..+...+.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++...+.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            5567778888999999999999999999999999999999999999999999999999999863

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.1e-05  Score=84.17  Aligned_cols=91  Identities=9%  Similarity=-0.079  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcC
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMRSTPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEK  554 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  554 (709)
                      .+..+...+.+.|+.++|...++.. +.++ ..++..+...++..|++++|+..++++++++|++..+|..|+.+|...|
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~  200 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSS-CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG  200 (497)
T ss_dssp             ---------------------CCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence            3444444555555555554443221 0111 1233444445555555555555555555555555555555555555555


Q ss_pred             CchhHHHHHHHHH
Q 039873          555 RWDGVSKIRKLMK  567 (709)
Q Consensus       555 ~~~~a~~~~~~m~  567 (709)
                      +..+|...+.+..
T Consensus       201 ~~~~A~~~y~ral  213 (497)
T d1ya0a1         201 DHLTTIFYYCRSI  213 (497)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            5555555555443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.0002  Score=58.07  Aligned_cols=98  Identities=9%  Similarity=-0.004  Sum_probs=68.8

Q ss_pred             HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCH---HHHHHHHhhcCCCC-----hhhHHHHHHH
Q 039873          341 AVMLNSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNI---EAANKVFSDMRYRD-----IITWNAMICG  412 (709)
Q Consensus       341 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~-----~~~~~~li~~  412 (709)
                      ..+++.+...+++++|++.|..+++.+ +.+..++..+..++.+.++.   ++|..+|+++...+     ..+|..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            345666667777777777777777765 55667777777777765544   45888888776422     2366777888


Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 039873          413 YSHHGLGREALTLFQNMLAAEERPNHVTF  441 (709)
Q Consensus       413 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~  441 (709)
                      |.+.|++++|++.|++..+  +.|+..-.
T Consensus        82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A  108 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQ--TEPQNNQA  108 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred             HHHHhhhHHHHHHHHHHHH--hCcCCHHH
Confidence            8888888888888888888  56765433

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.65  E-value=0.029  Score=53.54  Aligned_cols=276  Identities=10%  Similarity=0.003  Sum_probs=129.7

Q ss_pred             ChhhHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHh
Q 039873          134 NEYIFSIVLSSCSRSGRGAEGRQCHGYVFKSGLVFCKYVRNALVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIE  213 (709)
Q Consensus       134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~  213 (709)
                      |..--..+..-|.+.|.++.|..++..+         .-+..++..|.+.++++.|.+++.+..  +..+|..+...+.+
T Consensus        13 n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~   81 (336)
T d1b89a_          13 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVD   81 (336)
T ss_dssp             ----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHh
Confidence            3334444444455555555555554421         223444555555555555555554432  34456666666555


Q ss_pred             CCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 039873          214 NECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKV  293 (709)
Q Consensus       214 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~  293 (709)
                      .....-|     .+...+...+......++..+-..|..++...+++...... ..+..+++-|+..|++.+. ++-.+.
T Consensus        82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e~  154 (336)
T d1b89a_          82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMREH  154 (336)
T ss_dssp             TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred             CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHHH
Confidence            5443322     11222233344455566666666666666666666554321 3455566666666666542 222333


Q ss_pred             HHhccCC-C----------HhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHH
Q 039873          294 FEGLETR-N----------VVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAH  362 (709)
Q Consensus       294 ~~~m~~~-~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~  362 (709)
                      +.....+ |          ...|.-++--|.+.|++++|+.+.   .+.  .++..-....+..+.+..+.+...++...
T Consensus       155 l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~  229 (336)
T d1b89a_         155 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQF  229 (336)
T ss_dssp             HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred             HHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence            3222111 1          123555666666677777666553   221  34555555666777777777776666665


Q ss_pred             HHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 039873          363 IEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFV  442 (709)
Q Consensus       363 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~  442 (709)
                      .++.    ++...+.|+......-+..+..+.|++                  .++..-....++.....|   +....+
T Consensus       230 yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~k------------------~~~l~li~p~Le~v~~~n---~~~vn~  284 (336)
T d1b89a_         230 YLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSK------------------VKQLPLVKPYLRSVQNHN---NKSVNE  284 (336)
T ss_dssp             HHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHH------------------TTCTTTTHHHHHHHHTTC---CHHHHH
T ss_pred             HHHc----CHHHHHHHHHHhccCCCHHHHHHHHHh------------------cCCcHHHHHHHHHHHHcC---hHHHHH
Confidence            5543    123334444444444455555544443                  333444444444433322   234455


Q ss_pred             HHHHHHhccccHHHH
Q 039873          443 GVLSACGHLGLVQEG  457 (709)
Q Consensus       443 ~ll~a~~~~g~~~~a  457 (709)
                      ++...+...++++.-
T Consensus       285 al~~lyie~~d~~~l  299 (336)
T d1b89a_         285 SLNNLFITEEDYQAL  299 (336)
T ss_dssp             HHHHHHHHTTCHHHH
T ss_pred             HHHHHHhCcchhHHH
Confidence            555555555554443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=6.5e-05  Score=61.93  Aligned_cols=92  Identities=13%  Similarity=0.091  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCch-------hHHHHH
Q 039873          477 YTCIVGLLSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVG-------TYILLS  547 (709)
Q Consensus       477 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~  547 (709)
                      +..+.+.|.+.|++++|++.|++. .+.| +..+|..+..++.+.|+++.|++.++++++++|++..       +|..++
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            345667788888888888887643 3344 4888999999999999999999999999999887654       556677


Q ss_pred             HHhhhcCCchhHHHHHHHHHh
Q 039873          548 NMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       548 ~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ..+...+++++|.+.++....
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            788888999999999987754

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.58  E-value=0.00028  Score=60.04  Aligned_cols=126  Identities=10%  Similarity=-0.102  Sum_probs=90.2

Q ss_pred             hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 039873          404 ITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGL  483 (709)
Q Consensus       404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~  483 (709)
                      ..+......+.+.|++.+|+..|++....  -|...           ...-.........        ....+|+.+..+
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~~   76 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKN--------IEISCNLNLATC   76 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence            46667778888999999999999988763  11100           0000000000000        112367778899


Q ss_pred             HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHh
Q 039873          484 LSKAGLLDEAEKFMRST-PVKW-DVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMY  550 (709)
Q Consensus       484 ~~~~g~~~~A~~~~~~~-~~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  550 (709)
                      |.+.|++++|++.++.. .+.| +.-+|..+..++...|+++.|+..++++++++|++..+...+..+.
T Consensus        77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999998753 3455 4889999999999999999999999999999999987776665544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.51  E-value=0.035  Score=51.15  Aligned_cols=227  Identities=10%  Similarity=-0.060  Sum_probs=118.5

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHhccC-CCHhhHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCccchHHHH
Q 039873          270 DVFINSAMISMYGKCGKFSNAKKVFEGLET-RNVVLWTAMVAACFQ----NEYFEEALNLFCGMEYEAIRPNEFTFAVML  344 (709)
Q Consensus       270 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll  344 (709)
                      |+..+..|...+.+.++.++|.+.|++..+ .|..++-.|-..|..    ..+...|...+......+. |  .....+.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~--~a~~~l~   77 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-S--NGCHLLG   77 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-H--HHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-c--chhhccc
Confidence            345667777888899999999999998765 466677667666665    5678888888887766542 1  1222222


Q ss_pred             HHH----hccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHh----cCCHHHHHHHHhhcC-CCChhhHHHHHHHHHH
Q 039873          345 NSA----AGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAK----GGNIEAANKVFSDMR-YRDIITWNAMICGYSH  415 (709)
Q Consensus       345 ~~~----~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~  415 (709)
                      ..+    ....+.+.+...+....+.|..   .....+...+..    ......|...+.... ..+..++..|...|..
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~  154 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA  154 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence            222    2245566677777776665522   111222222221    223444444444322 2344444444444433


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHh----cCCHH
Q 039873          416 HGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSK----AGLLD  491 (709)
Q Consensus       416 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~  491 (709)
                      ..                               ....+...+..++....+ .|   +......|..+|..    ..+++
T Consensus       155 ~~-------------------------------~~~~~~~~~~~~~~~a~~-~g---~~~A~~~lg~~y~~g~~~~~d~~  199 (265)
T d1ouva_         155 GR-------------------------------GTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATKNFK  199 (265)
T ss_dssp             TS-------------------------------SSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred             CC-------------------------------Ccccccccchhhhhcccc-cc---ccccccchhhhcccCcccccchh
Confidence            10                               012233333333333322 11   22233333333332    34566


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcCC
Q 039873          492 EAEKFMRSTPVKWDVVAWHTLLNASRV----HQNYGFGRRIAEYILHMDP  537 (709)
Q Consensus       492 ~A~~~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p  537 (709)
                      +|...|++....-++..+..|...+..    ..|.++|.+.++++.+.+.
T Consensus       200 ~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         200 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             hhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            666666543222245555555555543    3377788888888877764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.51  E-value=0.00024  Score=56.77  Aligned_cols=86  Identities=10%  Similarity=-0.062  Sum_probs=45.4

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 039873          409 MICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKA  487 (709)
Q Consensus       409 li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~  487 (709)
                      +...+.+.|++++|+..|++...  ..|+ ..+|..+..++.+.|++++|...|+..++.  .+.+...+..+...|...
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHC
Confidence            34445555666666666666555  2343 345555555555666666666666555442  112244555555555555


Q ss_pred             CCHHHHHHHHH
Q 039873          488 GLLDEAEKFMR  498 (709)
Q Consensus       488 g~~~~A~~~~~  498 (709)
                      |++++|.+.++
T Consensus        98 g~~~~A~~~l~  108 (112)
T d1hxia_          98 HNANAALASLR  108 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            55555555554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.49  E-value=0.00098  Score=57.52  Aligned_cols=63  Identities=8%  Similarity=-0.032  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          507 VAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       507 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      .+|..+..++...|++++|+..++++++++|.+..+|..++.+|...|++++|.+.++.+.+.
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345567778899999999999999999999999999999999999999999999999998763

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.40  E-value=0.00043  Score=60.47  Aligned_cols=113  Identities=11%  Similarity=-0.017  Sum_probs=80.3

Q ss_pred             HHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCch
Q 039873          444 VLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYG  523 (709)
Q Consensus       444 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~  523 (709)
                      ........|++++|.+.|.....-+.-.+-..        +...........-++..    ....|..+...+...|+++
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCch
Confidence            34467788899999888888765322111000        00000111111111111    2456788889999999999


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          524 FGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       524 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +|...++++++.+|.+...|..++.+|...|++++|.+.|+++.+
T Consensus        85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999854

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0016  Score=53.07  Aligned_cols=91  Identities=11%  Similarity=-0.055  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-----hHHHHH
Q 039873          406 WNAMICGYSHHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-----LEHYTC  479 (709)
Q Consensus       406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~  479 (709)
                      +..+...|.+.|++++|++.|++.++.  .| +...+..+..++.+.|++++|...+..+++...-.+.     ..+|..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            445666777778888888888887774  34 4557777777788888888888887776552211111     123444


Q ss_pred             HHHHHHhcCCHHHHHHHHH
Q 039873          480 IVGLLSKAGLLDEAEKFMR  498 (709)
Q Consensus       480 li~~~~~~g~~~~A~~~~~  498 (709)
                      +.+.+...+++++|.+.|+
T Consensus        85 lg~~~~~~~~~~~A~~~~~  103 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYN  103 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHH
Confidence            4455555555555555544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=4.9e-05  Score=79.20  Aligned_cols=162  Identities=13%  Similarity=0.004  Sum_probs=87.8

Q ss_pred             HhHHHHHHHHHHhCCCCCCccchHHHHHHHhccCChhHHHHHHHHHHH-----hCC-CCChhHHhHHHhHHHhcCCHHHH
Q 039873          318 FEEALNLFCGMEYEAIRPNEFTFAVMLNSAAGLSALRHGDLLHAHIEK-----SGF-KEHLIVGNALINMYAKGGNIEAA  391 (709)
Q Consensus       318 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-----~g~-~~~~~~~~~li~~y~~~g~~~~A  391 (709)
                      +..+++.+++..+....++..-....+..     .+..+...+..++.     .++ +++...+..+...+.+.|+.++|
T Consensus        65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~-----~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A  139 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRANPNRSEVQANLSL-----FLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAI  139 (497)
T ss_dssp             THHHHHHHHHHHSCSSCTTTTHHHHHHHH-----HHHHHHHHHHHHHHHHTC----------------------------
T ss_pred             HHHHHHHHHHhcccccCccHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHH
Confidence            34566666666654434443322222222     22334444433332     122 23455667777888888888888


Q ss_pred             HHHHhhcCCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHhhC
Q 039873          392 NKVFSDMRYRDI-ITWNAMICGYSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLGLVQEGFYYLNHLMKQIG  469 (709)
Q Consensus       392 ~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~  469 (709)
                      ...+.....++. .++..+...+...|++++|+..|++..+  +.|+ ..+|+.+...+...|+..+|...|.+.+.  -
T Consensus       140 ~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--~  215 (497)
T d1ya0a1         140 VKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA--V  215 (497)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--S
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--C
Confidence            887776554332 4677788888999999999999999988  5665 56899999999999999999999888754  3


Q ss_pred             CCCChHHHHHHHHHHHhcC
Q 039873          470 IVPGLEHYTCIVGLLSKAG  488 (709)
Q Consensus       470 ~~p~~~~~~~li~~~~~~g  488 (709)
                      ..|-...+..|...|.+..
T Consensus       216 ~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         216 KFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             SBCCHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            3566777888888776544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.00  E-value=0.0005  Score=57.72  Aligned_cols=126  Identities=12%  Similarity=0.088  Sum_probs=72.5

Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccc----------cHHHHHHHHHHHHHhhCCCC-ChHHHHHH
Q 039873          413 YSHHGLGREALTLFQNMLAAEERPN-HVTFVGVLSACGHLG----------LVQEGFYYLNHLMKQIGIVP-GLEHYTCI  480 (709)
Q Consensus       413 ~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g----------~~~~a~~~~~~~~~~~~~~p-~~~~~~~l  480 (709)
                      |-+.+.+++|++.|++..+  +.|+ ..++..+..++...+          .+++|+..|+.+++.   .| +...|..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l---~P~~~~a~~~l   81 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCI   81 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---cchhhHHHhhH
Confidence            4556677888888888877  4554 446666666665433          345555555555432   22 23344444


Q ss_pred             HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHH
Q 039873          481 VGLLSKAGLLDEAEKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVS  560 (709)
Q Consensus       481 i~~~~~~g~~~~A~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~  560 (709)
                      ..+|...|++.            ++...         ..++++.|.+.|+++++++|++......|...       ..|.
T Consensus        82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~  133 (145)
T d1zu2a1          82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAP  133 (145)
T ss_dssp             HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHH
T ss_pred             HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHH
Confidence            44444333210            11110         11246889999999999999987655555444       4566


Q ss_pred             HHHHHHHhCCC
Q 039873          561 KIRKLMKVRKV  571 (709)
Q Consensus       561 ~~~~~m~~~~~  571 (709)
                      +++.+..++|+
T Consensus       134 ~~~~e~~k~~~  144 (145)
T d1zu2a1         134 QLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHSSS
T ss_pred             HHHHHHHHHhc
Confidence            66666666654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.99  E-value=0.00024  Score=59.83  Aligned_cols=49  Identities=16%  Similarity=0.042  Sum_probs=42.0

Q ss_pred             CCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCC-----------chhHHHHHHHHHh
Q 039873          520 QNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKR-----------WDGVSKIRKLMKV  568 (709)
Q Consensus       520 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~  568 (709)
                      +.+++|+..++++++++|+++.+|..++.+|...|+           +++|.+.|+...+
T Consensus        55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~  114 (145)
T d1zu2a1          55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD  114 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence            345789999999999999999999999999988764           5778888887765

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.97  E-value=0.0014  Score=55.65  Aligned_cols=63  Identities=11%  Similarity=-0.094  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC-------C----CchhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          506 VVAWHTLLNASRVHQNYGFGRRIAEYILHMDP-------N----DVGTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       506 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-------~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      ...|+.+..++...|++++|...+++.+++.|       +    ....|..++.+|...|++++|.+.|++..+
T Consensus        55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677777778888888888888887776432       1    123577899999999999999999999875

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.85  E-value=0.0062  Score=52.74  Aligned_cols=120  Identities=9%  Similarity=0.063  Sum_probs=78.6

Q ss_pred             HHHhccCChhHHHHHHHHHHHhCCCCChhHHhHHHhHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHH
Q 039873          345 NSAAGLSALRHGDLLHAHIEKSGFKEHLIVGNALINMYAKGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALT  424 (709)
Q Consensus       345 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~  424 (709)
                      ......|+++.|.+.+...+...  +....    .+ +. .+.  -+...-..+....+..+..+...+...|++++|+.
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~--rG~~l----~~-~~-~~~--w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREW--RGPVL----DD-LR-DFQ--FVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTC--CSSTT----GG-GT-TST--THHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhC--ccccc----cc-Cc-chH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            34566777888877777776531  11000    00 00 000  01111111112234577888899999999999999


Q ss_pred             HHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHH----hhCCCCChHH
Q 039873          425 LFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMK----QIGIVPGLEH  476 (709)
Q Consensus       425 ~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~  476 (709)
                      .++++..  +.| +...|..++.++...|+.++|.+.|+.+.+    +.|+.|...+
T Consensus        89 ~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          89 ELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            9999988  455 567899999999999999999999888643    4688888654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0041  Score=47.38  Aligned_cols=70  Identities=14%  Similarity=0.055  Sum_probs=49.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHH
Q 039873          479 CIVGLLSKAGLLDEAEKFMRST--------PVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSN  548 (709)
Q Consensus       479 ~li~~~~~~g~~~~A~~~~~~~--------~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  548 (709)
                      -+...+.+.|++++|.+.|++.        ...++ ..++..|..++.+.|++++|+..++++++++|+++.++..+..
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~   88 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            3445555555555555554321        11233 5678889999999999999999999999999999887777643

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.53  E-value=0.01  Score=49.94  Aligned_cols=63  Identities=13%  Similarity=-0.066  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 039873          476 HYTCIVGLLSKAGLLDEAEKFMRST--------PVKWD-----VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPN  538 (709)
Q Consensus       476 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~pd-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  538 (709)
                      .|+.+..+|.+.|++++|.+.+++.        ...++     ...+..+..++...|++++|+..|++++++.|.
T Consensus        57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3445555555555555555543321        11222     224566778889999999999999999887653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.49  E-value=0.0041  Score=57.75  Aligned_cols=123  Identities=16%  Similarity=0.060  Sum_probs=76.0

Q ss_pred             HcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHH
Q 039873          415 HHGLGREALTLFQNMLAAEERP-NHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPG-LEHYTCIVGLLSKAGLLDE  492 (709)
Q Consensus       415 ~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~  492 (709)
                      +.|++++|++.+++.++.  .| |...+..+...++..|++++|...++...+.   .|+ ...+..+..++...+..++
T Consensus         8 ~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence            467788888888887773  45 4557777777788888888888888777543   444 3344444444444444444


Q ss_pred             HHHHHHh--CCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchh
Q 039873          493 AEKFMRS--TPVKWD-VVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGT  542 (709)
Q Consensus       493 A~~~~~~--~~~~pd-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  542 (709)
                      +..-...  ....|+ ...+......+...|+.+.|.+.++++.+..|..+..
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence            4332221  111232 2333334456777888899998888888888876543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.01  Score=45.09  Aligned_cols=62  Identities=15%  Similarity=-0.001  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-------chhHHHHHHHhhhcCCchhHHHHHHHHHhC
Q 039873          508 AWHTLLNASRVHQNYGFGRRIAEYILHMDPND-------VGTYILLSNMYAKEKRWDGVSKIRKLMKVR  569 (709)
Q Consensus       508 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  569 (709)
                      .+-.+...+.+.|+++.|...+++++++.|.+       ..++..|+.+|.+.|++++|...++++.+.
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            34457778899999999999999999875432       457889999999999999999999999763

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.99  E-value=0.21  Score=38.58  Aligned_cols=140  Identities=10%  Similarity=-0.017  Sum_probs=97.1

Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHH
Q 039873          414 SHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEA  493 (709)
Q Consensus       414 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A  493 (709)
                      ...|..++..++..+....   .+..-|+.++.-....-+-+...+.++.+    |-..|          +.+|+++...
T Consensus        13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~I----G~~FD----------ls~C~Nlk~v   75 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI----GSYFD----------LDKCQNLKSV   75 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH----GGGSC----------GGGCSCTHHH
T ss_pred             HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHH----hhhcC----------chhhhcHHHH
Confidence            4457777888888777653   23445555554444444555555555554    22222          2356666666


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHHHHHHhCCCc
Q 039873          494 EKFMRSTPVKWDVVAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIRKLMKVRKVK  572 (709)
Q Consensus       494 ~~~~~~~~~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  572 (709)
                      ...+-.++  .+....+.-++...++|.-+.-.++++.+++.+..++.....++++|.+.|...++-+++.+.-++|++
T Consensus        76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            66665554  244555667788888999999999999988877667889999999999999999999999999999874

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=95.81  E-value=0.0051  Score=57.02  Aligned_cols=113  Identities=9%  Similarity=-0.045  Sum_probs=55.9

Q ss_pred             hcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHH
Q 039873          384 KGGNIEAANKVFSDMR---YRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHV-TFVGVLSACGHLGLVQEGFY  459 (709)
Q Consensus       384 ~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~  459 (709)
                      +.|++++|...|++..   ..|...+..+...|+..|++++|++.|++..+  ..|+.. .+..+...+...+..+++..
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~a~~   85 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKDFAQ   85 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHHHHH
Confidence            3466666666666543   23455666666666666666666666666666  345433 33333333333333333322


Q ss_pred             HHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 039873          460 YLNHLMKQIGIVPGLEHYTCIVGLLSKAGLLDEAEKFMRS  499 (709)
Q Consensus       460 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  499 (709)
                      ....... .+-.++...+......+.+.|+.++|.+.+++
T Consensus        86 ~~~~~~~-~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~  124 (264)
T d1zbpa1          86 GAATAKV-LGENEELTKSLVSFNLSMVSQDYEQVSELALQ  124 (264)
T ss_dssp             SCCCEEC-CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             Hhhhhhc-ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            2111100 01111222333445556677777777776543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=91.63  E-value=1.8  Score=34.09  Aligned_cols=16  Identities=6%  Similarity=0.044  Sum_probs=9.9

Q ss_pred             CHhHHHHHHHHHHhCC
Q 039873          317 YFEEALNLFCGMEYEA  332 (709)
Q Consensus       317 ~~~~A~~~~~~m~~~g  332 (709)
                      ++++|+++|++..+.|
T Consensus         8 d~~~A~~~~~kaa~~g   23 (133)
T d1klxa_           8 DLKKAIQYYVKACELN   23 (133)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCC
Confidence            4566666666665554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=91.53  E-value=1.7  Score=34.25  Aligned_cols=109  Identities=8%  Similarity=-0.069  Sum_probs=54.4

Q ss_pred             CccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCChHHHH
Q 039873          216 CFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLGLQVHSQMLKSDIEPDVFINSAMISMYGK----CGKFSNAK  291 (709)
Q Consensus       216 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~  291 (709)
                      ++++|+.+|++..+.|.   ......+.  .....+.+++.+.+....+.|   +......|..+|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            45667777777666552   22222221  233456666777776666665   33444445555543    23455666


Q ss_pred             HHHHhccC-CCHhhHHHHHHHHHH----cCCHhHHHHHHHHHHhCC
Q 039873          292 KVFEGLET-RNVVLWTAMVAACFQ----NEYFEEALNLFCGMEYEA  332 (709)
Q Consensus       292 ~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g  332 (709)
                      +.|++..+ .++.+...|...|..    ..+.++|+++|++..+.|
T Consensus        80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            66665443 234444444333333    234555555555544443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=90.84  E-value=2.7  Score=32.30  Aligned_cols=85  Identities=13%  Similarity=-0.003  Sum_probs=62.1

Q ss_pred             hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 039873          384 KGGNIEAANKVFSDMRYRDIITWNAMICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNH  463 (709)
Q Consensus       384 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~  463 (709)
                      +|+++......|-.+- .+..-.+.-++.+.++|+-++-.++++.+.+. -+|++.....+..||.+.|...++-+++.+
T Consensus        68 ~C~Nlk~vv~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~  145 (161)
T d1wy6a1          68 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE  145 (161)
T ss_dssp             GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence            4566666655555443 23344556677888999999988999887775 488888888999999999999999999888


Q ss_pred             HHHhhCCC
Q 039873          464 LMKQIGIV  471 (709)
Q Consensus       464 ~~~~~~~~  471 (709)
                      +-+ .|++
T Consensus       146 ACe-~G~K  152 (161)
T d1wy6a1         146 ACK-KGEK  152 (161)
T ss_dssp             HHH-TTCH
T ss_pred             HHH-HhHH
Confidence            766 3553

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=90.38  E-value=8.6  Score=37.38  Aligned_cols=56  Identities=7%  Similarity=-0.093  Sum_probs=35.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 039873          276 AMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEA  332 (709)
Q Consensus       276 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  332 (709)
                      .-+..+.+.++.+.....+..-+ .++..-.....+....|+..+|.+.+...-..|
T Consensus        77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~  132 (450)
T d1qsaa1          77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG  132 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence            34556667777777666554322 244444556677777888888887777766544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.19  E-value=0.43  Score=37.19  Aligned_cols=48  Identities=10%  Similarity=0.005  Sum_probs=27.8

Q ss_pred             CchHHHHHHHHHHhcCCCCc-hhHHHHHHHhhhcCCchhHHHHHHHHHh
Q 039873          521 NYGFGRRIAEYILHMDPNDV-GTYILLSNMYAKEKRWDGVSKIRKLMKV  568 (709)
Q Consensus       521 ~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~  568 (709)
                      +.++|+.+++.+.+.+|.+. ..+..|+-+|.+.|++++|++.++.+.+
T Consensus        53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            34556666666665555443 3445566666666666666666666654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.24  E-value=4.3  Score=31.23  Aligned_cols=36  Identities=11%  Similarity=0.147  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCchh
Q 039873          507 VAWHTLLNASRVHQNYGFGRRIAEYILHMDPNDVGT  542 (709)
Q Consensus       507 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  542 (709)
                      ..|-.|.-+|.+.|+++.|++.++++++++|++..+
T Consensus        74 d~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          74 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            566667778889999999999999999999988543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=83.81  E-value=20  Score=34.53  Aligned_cols=351  Identities=10%  Similarity=-0.015  Sum_probs=176.1

Q ss_pred             HHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCcHHH
Q 039873          176 LVELYTKCLDVEMAKRLLDLLPGYDVFEYNSVLNGLIENECFRGGVEVLGKMVSGSVRWDSVTYVNAFGLSASLKDLKLG  255 (709)
Q Consensus       176 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  255 (709)
                      -+..+.+.++.......+...+ .++..-.....+..+.|+..+|...+...-..|..                 ..+..
T Consensus        78 ~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~~c  139 (450)
T d1qsaa1          78 FVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPNAC  139 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCTHH
T ss_pred             HHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------CchHH
Confidence            3455667777777666554432 23434445667778888888888888777654422                 12223


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhccCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 039873          256 LQVHSQMLKSDIEPDVFINSAMISMYGKCGKFSNAKKVFEGLETRNVVLWTAMVAACFQNEYFEEALNLFCGMEYEAIRP  335 (709)
Q Consensus       256 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  335 (709)
                      ..++..+.+.| ..+...+-.-+......|+...|..+...++..........+.....-   ..+......     ..+
T Consensus       140 ~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p---~~~~~~~~~-----~~~  210 (450)
T d1qsaa1         140 DKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFART-----TGA  210 (450)
T ss_dssp             HHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHH-----SCC
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhCh---HhHHHHHhc-----CCC
Confidence            34444445544 233334444555566678888888888777655544444444443322   222221111     111


Q ss_pred             CccchHHHHHHHhc--cCChhHHHHHHHHHHHhCCCCChhHH---hHHHhHHHhcCCHHHHHHHHhhcC--CCChhhHHH
Q 039873          336 NEFTFAVMLNSAAG--LSALRHGDLLHAHIEKSGFKEHLIVG---NALINMYAKGGNIEAANKVFSDMR--YRDIITWNA  408 (709)
Q Consensus       336 d~~t~~~ll~~~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~---~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~  408 (709)
                      +......+..+..+  ..+.+.+..++...............   ..+...+...+..+.+...+....  ..+.....-
T Consensus       211 ~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w  290 (450)
T d1qsaa1         211 TDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIER  290 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             ChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHH
Confidence            22222222222222  13455555555555443211111111   112222223455555655554433  122222222


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC
Q 039873          409 MICGYSHHGLGREALTLFQNMLAAEERPNHVTFVGVLSACGHLGLVQEGFYYLNHLMKQIGIVPGLEHYTCIVGLLSKAG  488 (709)
Q Consensus       409 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  488 (709)
                      .+......++...+...|..|.... .-...-.--+..+....|+.++|..+|.....    .++  .|.-|...  +.|
T Consensus       291 ~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg  361 (450)
T d1qsaa1         291 RVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIG  361 (450)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTT
T ss_pred             HHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcC
Confidence            3334455677777777777764321 11222333455677778888888888877632    233  34433211  112


Q ss_pred             CHHHHHHH-HHhCCCCCC-HHHHH---HHHHHHHhcCCchHHHHHHHHHHhcCCCCchhHHHHHHHhhhcCCchhHHHHH
Q 039873          489 LLDEAEKF-MRSTPVKWD-VVAWH---TLLNASRVHQNYGFGRRIAEYILHMDPNDVGTYILLSNMYAKEKRWDGVSKIR  563 (709)
Q Consensus       489 ~~~~A~~~-~~~~~~~pd-~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~  563 (709)
                      ..-   .+ ....+..++ ...-+   .-+..+...|....|...+..+.+..  ++.....++.+..+.|.++.|+...
T Consensus       362 ~~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~  436 (450)
T d1qsaa1         362 EEY---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQAT  436 (450)
T ss_dssp             CCC---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCC---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHH
Confidence            100   00 000111111 11111   12334567788888888888776543  3456677788888889998888777


Q ss_pred             HHHH
Q 039873          564 KLMK  567 (709)
Q Consensus       564 ~~m~  567 (709)
                      .+..
T Consensus       437 ~~~~  440 (450)
T d1qsaa1         437 IAGK  440 (450)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            6654