Citrus Sinensis ID: 039884

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------
QVENALSKIEQPLSPETSKKAEALKKLEAATKPLRKSIIKHGLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPVLEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYYLSVRKKEKGSCHDETHEQMKNSFVKMSASFPDPSKAEGCFQRLNEMKDNKIFNSLEELLDNMTIKNAEILRDKFLKLIGNKHPEFEFLQLLTSKCLYIFDSELVCCIVNGLSSNRYADKHLEDSSINLLLAIISIFPSLLRGSEVQFQKLLERNGLINDKLIEVLAKAGPHISIKYSDIYPLLERLCLEGTRAQSKHAVSAIASLSGASEQFVFMELCKGLVDSLHCGRNIPTVLQSLGCIAQYSVSAFESQSEDITRYIYENLIKVTFF
cHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHccccc
cHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccEEEEEEcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccEEEcHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHHHHHHHHccc
qvenalskieqplspetSKKAEALKKLEAATKPLRKSIIKHgllhqndkdIRLSVATCVSELFRilapeppfednyLRGVFELIISLFKElgntgcpffsKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVrlcsephlssLTNHMLSTMTHIINEETSLPLLEVVLWNLVkqekdspyaASQLAVSVIRNCAEklepfvcgfltscfldrdavegdLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKicaqpdncladrYPELFVEFLKRFSDKSAEVRLNALRCAKAcylggpfrKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCcegqmtvcdhfeqipCKILMLCYdkdykefrpqNIERILvedlfpvleveesTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYYLSVRKkekgschdetHEQMKNSFVkmsasfpdpskaegCFQRLNEMKDNKIFNSLEELLDNMTIKNAEILRDKFLKLIGNKHPEFEFLQLLTSKCLYIFDSELVCCIVNglssnryadkhleDSSINLLLAIISIFPSLLRGSEVQFQKLLERNGLINDKLIEVLAKagphisikysdiyPLLERLCLEGTRAQSKHAVSAIASLSGASEQFVFMELCKGLvdslhcgrniptVLQSLGCIAQYSVSAFESQSEDITRYIYENLIKVTFF
qvenalskieqplspetskKAEALKKLEAATKPLRKSIIKhgllhqndkdiRLSVATCVSELFRILapeppfedNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGkicaqpdncLADRYPELFVEFLKRFSDKSAEVRLNALRCAKAcylggpfrkESREILAALESrlldfddrVRTEAVIVACDlarshlkfvpekliseaterlrdkkisiRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPVLEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYYLSVrkkekgschdetHEQMKNSFVKMSASFPDPSKAEGCFQRLNEMKDNKIFNSLEELLDNMTIKNAEILRDKFLKLIGNKHPEFEFLQLLTSKCLYIFDSELVCCIVNGLSSNRYADKHLEDSSINLLLAIISIFPSLLRGSEVQFQKLLERNGLINDKLIEVLAKAGPHISIKYSDIYPLLERLCLEGTRAQSKHAVSAIASLSGASEQFVFMELCKGLVDSLHCGRNIPTVLQSLGCIAQYSVSAFESQSEDITRYIYENLIKVTFF
QVENALSKIEQPLSPETSkkaealkkleaaTKPLRKSIIKHGLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPVLEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYYLSVRKKEKGSCHDETHEQMKNSFVKMSASFPDPSKAEGCFQRLNEMKDNKIFNSLEELLDNMTIKNAEILRDKFLKLIGNKHPEFEFLQLLTSKCLYIFDSELVCCIVNGLSSNRYADKHLEDssinlllaiisiFPSLLRGSEVQFQKLLERNGLINDKLIEVLAKAGPHISIKYSDIYPLLERLCLEGTRAQSKHAVSAIASLSGASEQFVFMELCKGLVDSLHCGRNIPTVLQSLGCIAQYSVSAFESQSEDITRYIYENLIKVTFF
************************************SIIKHGLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPVLEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYYLSV*******************************************KDNKIFNSLEELLDNMTIKNAEILRDKFLKLIGNKHPEFEFLQLLTSKCLYIFDSELVCCIVNGLSSNRYADKHLEDSSINLLLAIISIFPSLLRGSEVQFQKLLERNGLINDKLIEVLAKAGPHISIKYSDIYPLLERLCLEGTRAQSKHAVSAIASLSGASEQFVFMELCKGLVDSLHCGRNIPTVLQSLGCIAQYSVSAFESQSEDITRYIYENLIKVTF*
**ENALSKI*********************TKPLRKSIIKHGLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPVLEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYYLS****************MKNSFVKMSASFPDPSKAEGCFQRLNEMKDNKIFNSLEELLDNMTIKNAEI****************EFLQLLTSKCLYIFDSELVCCIVNGL************SSINLLLAIISIFPSLLRGSEVQFQKLLERNGLINDKLIEVLAKAGPHISIKYSDIYPLLERLCLEGTRAQSKHAVSAIASLSGASEQFVFMELCKGLVDSLHCGRNIPTVLQSLGCIAQYSVSAFESQSEDITRYIYENLIKVTFF
********IEQPLSPETSKKAEALKKLEAATKPLRKSIIKHGLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPVLEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYYLSVR***********HEQMKNSFVKMSASFPDPSKAEGCFQRLNEMKDNKIFNSLEELLDNMTIKNAEILRDKFLKLIGNKHPEFEFLQLLTSKCLYIFDSELVCCIVNGLSSNRYADKHLEDSSINLLLAIISIFPSLLRGSEVQFQKLLERNGLINDKLIEVLAKAGPHISIKYSDIYPLLERLCLEGT*********AIASLSGASEQFVFMELCKGLVDSLHCGRNIPTVLQSLGCIAQYSVSAFESQSEDITRYIYENLIKVTFF
QVENALSKIEQPLSPETSKKAEALKKLEAATKPLRKSIIKHGLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPVLEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYYLSVRKKEKGSCHDETHEQMKNSFVKMSASFPDPSKAEGCFQRLNEMKDNKIFNSLEELLDNMTIKNAEILRDKFLKLIGNKHPEFEFLQLLTSKCLYIFDSELVCCIVNGLSSNRYADKHLEDSSINLLLAIISIFPSLLRGSEVQFQKLLERNGLINDKLIEVLAKAGPHISIKYSDIYPLLERLCLEGTRAQSKHAVSAIASLSGASEQFVFMELCKGLVDSLHCGRNIPTVLQSLGCIAQYSVSAFESQSEDITRYIYENLIKVTFF
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QVENALSKIEQPLSPETSKKAEALKKLEAATKPLRKSIIKHGLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPVLEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYYLSVRKKEKGSCHDETHEQMKNSFVKMSASFPDPSKAEGCFQRLNEMKDNKIFNSLEELLDNMTIKNAEILRDKFLKLIGNKHPEFEFLQLLTSKCLYIFDSELVCCIVNGLSSNRYADKHLEDSSINLLLAIISIFPSLLRGSEVQFQKLLERNGLINDKLIEVLAKAGPHISIKYSDIYPLLERLCLEGTRAQSKHAVSAIASLSGASEQFVFMELCKGLVDSLHCGRNIPTVLQSLGCIAQYSVSAFESQSEDITRYIYENLIKVTFF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query757 2.2.26 [Sep-21-2011]
Q4QXM3 1323 Sister chromatid cohesion N/A no 0.928 0.531 0.266 8e-54
Q4KLU7 1323 Sister chromatid cohesion N/A no 0.915 0.523 0.267 1e-53
Q5F3V3 1330 Sister chromatid cohesion yes no 0.910 0.518 0.265 1e-53
Q6A026 1332 Sister chromatid cohesion yes no 0.924 0.525 0.268 2e-52
A4L9P7 1333 Sister chromatid cohesion yes no 0.924 0.525 0.268 8e-52
Q29RF7 1337 Sister chromatid cohesion yes no 0.924 0.523 0.266 1e-51
A1L1F4 1320 Sister chromatid cohesion yes no 0.915 0.525 0.259 4e-49
Q5U241 1464 Sister chromatid cohesion N/A no 0.892 0.461 0.255 5e-49
Q9HFF5 1205 Sister chromatid cohesion yes no 0.932 0.585 0.236 7e-49
Q498H0 1448 Sister chromatid cohesion N/A no 0.892 0.466 0.256 5e-48
>sp|Q4QXM3|PD5AA_XENLA Sister chromatid cohesion protein PDS5 homolog A-A OS=Xenopus laevis GN=pds5a-a PE=1 SV=1 Back     alignment and function desciption
 Score =  212 bits (540), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 202/758 (26%), Positives = 365/758 (48%), Gaps = 55/758 (7%)

Query: 33  PLRKSIIKHGLLHQNDKDIRLSVATCVSELFRILAPEPPFED-NYLRGVFELIISLFKEL 91
           PL   +     L   +KD+RL VA C++++FRI APE P+   + L+ +F  I    K L
Sbjct: 60  PLALHLSSEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKEIFLFITRQLKGL 119

Query: 92  GNTGCPFFSKRVKILEIVARSKCFVIMLDI-DCNDLVLQMFNNFFSVVRLCSEPHLSSLT 150
            +T  P F++   +LE +A  K + I  ++ DCN++ +Q+F   FSV+   +  H   + 
Sbjct: 120 EDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVI---NNSHNQKVQ 176

Query: 151 NHMLSTMTHIINEETSLPL--LEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVC 208
            HML  M+ I  E   +    L+ +L NL+   K+    A  LA  +++  A+ +EP + 
Sbjct: 177 MHMLDLMSSITMEGDGVTQEQLDSILINLISAHKNLNKQAFDLAKVLLKRTAQTIEPCIA 236

Query: 209 GFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVN 268
            F     +   +   DL E   ++I ++F   P +LL+V+P L  +L  +  + R+  V 
Sbjct: 237 NFFNQVLVLGKSSVSDLSEHVFDLIQELFAIDPHLLLSVMPQLEFKLKSNDGEERLAVVR 296

Query: 269 LIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREIL 328
           L+ K+    D+ LA +   L+  FL RF+D    VRL +++ A  C +  P    ++++ 
Sbjct: 297 LLAKLFGSKDSDLATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNHP--DLAKDLT 354

Query: 329 AALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKL 388
             L+ R  D ++ +R + ++     A+  L  V ++L+    ER  DK+  +RK+A++ L
Sbjct: 355 EFLKVRSHDPEEAIRHDVIVTIITAAKKDLFLVNDQLLGFVRERTLDKRWRVRKEAMMGL 414

Query: 389 LEVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDK--DYKEFRPQNIERILVEDLFP-V 445
            ++Y++YC    EG     +    I  K+L + Y    D K      +E+I  + L P  
Sbjct: 415 AQLYKKYCLH-GEGGKDAAEKVSWIKDKLLHIYYQNSIDDKLL----VEKIFAQQLVPHN 469

Query: 446 LEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYYLSVRKKEKGSCHDETHEQ 505
           LE EE  +   +L++   P  +KALN +   +   RS +R  L + K+     +      
Sbjct: 470 LETEERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSHVRELLDLHKQPTSEANTTA--- 526

Query: 506 MKNSFVKMSASFPDPSKAEGCFQRLNEM--KDNKIFNSLEELLD-NMTIKNAEI-LRDKF 561
           M    + ++ + PDP KA+   ++ N++  +D K+ + LE L+  + + K A++ +RD  
Sbjct: 527 MFAKLMTVAKNLPDPGKAQDFVKKFNQVLGEDEKLRSQLEVLISPSCSCKQADVCVRDIA 586

Query: 562 LKLIGNKHPEFEFLQ----LLTSKCLYIFDSELVCCIVNGLSSN--RYADKHLE----DS 611
            K+   K P   FL+    LL        DSE +  +V  ++ +    AD   E    DS
Sbjct: 587 RKVANPKQPTNPFLEMVKFLLERIAPVHIDSEAISALVKLMNKSIEGTADDEEEGVSPDS 646

Query: 612 SINLLLAIISIF----PSLLRGSEVQFQKLLERNGLINDKL----IEVLAKAGPHISIKY 663
           +I   L ++ +     P+     E  ++ LL+   + +DK+    I++    G  I    
Sbjct: 647 AIRAGLELLKVLSFTHPTSFHSDET-YESLLQCLRMEDDKVAEAAIQIFRNTGHRIETDL 705

Query: 664 ----SDIYPLLERLCLEGTRAQSKHAVSAIASLSGASEQFVFMELCKGLVDSLHCGRNIP 719
               S + P+L +    GT  Q+K AV  I S+  ++++    ++ + L  SL+   ++P
Sbjct: 706 PQIRSALIPILHQKAKRGTPHQAKQAVHCIHSI-FSNKEVQLAQIFEPLSRSLNA--DVP 762

Query: 720 ----TVLQSLGCIAQYSVSAFESQSED-ITRYIYENLI 752
               T L SLG I+  +   F S  +  +  +I ++L+
Sbjct: 763 EQLVTPLVSLGHISMLAPDQFASPMKSVVANFIVKDLL 800
May regulate sister chromatid cohesion during mitosis and couple it to DNA replication.
Xenopus laevis (taxid: 8355)
>sp|Q4KLU7|PD5AB_XENLA Sister chromatid cohesion protein PDS5 homolog A-B OS=Xenopus laevis GN=pds5a-b PE=1 SV=1 Back     alignment and function description
>sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2 Back     alignment and function description
>sp|Q6A026|PDS5A_MOUSE Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus GN=Pds5a PE=3 SV=3 Back     alignment and function description
>sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1 Back     alignment and function description
>sp|Q29RF7|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1 Back     alignment and function description
>sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1 Back     alignment and function description
>sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2 Back     alignment and function description
>sp|Q9HFF5|PDS5_SCHPO Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pds5 PE=1 SV=1 Back     alignment and function description
>sp|Q498H0|PD5BA_XENLA Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus laevis GN=pds5b-a PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query757
255545484 1332 androgen induced inhibitor of proliferat 0.992 0.563 0.666 0.0
188509928 866 hypothetical binding protein [Gossypioid 0.988 0.863 0.638 0.0
302141822 1450 unnamed protein product [Vitis vinifera] 0.964 0.503 0.646 0.0
359492396 1305 PREDICTED: sister chromatid cohesion pro 0.964 0.559 0.645 0.0
449519492 1113 PREDICTED: LOW QUALITY PROTEIN: sister c 0.990 0.673 0.589 0.0
449449892 1113 PREDICTED: sister chromatid cohesion pro 0.990 0.673 0.589 0.0
356550859 1300 PREDICTED: sister chromatid cohesion pro 0.985 0.573 0.572 0.0
297842537 1298 binding protein [Arabidopsis lyrata subs 0.985 0.574 0.534 0.0
240254392 1367 sister chromatid cohesion protein PDS5 [ 0.984 0.544 0.537 0.0
12323390 1303 hypothetical protein; 73483-63403 [Arabi 0.984 0.571 0.537 0.0
>gi|255545484|ref|XP_002513802.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] gi|223546888|gb|EEF48385.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/756 (66%), Positives = 611/756 (80%), Gaps = 5/756 (0%)

Query: 1   QVENALSKIEQPLSPETSKKAEALKKLEAATKPLRKSIIKHGLLHQNDKDIRLSVATCVS 60
           Q  NAL++IE P  PE S+K EA+ KL +  KPL KS +KHGLL  +DKD++L VA C+S
Sbjct: 33  QAANALAQIEPPSPPEASRKKEAVNKLASGIKPLGKSFVKHGLLRNSDKDVKLLVAICIS 92

Query: 61  ELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLD 120
           E+FRILAPEPPFED YLR VF+LI+S+F EL +T  P+FS+RVKILE VAR KCFVI+LD
Sbjct: 93  EIFRILAPEPPFEDKYLRDVFKLILSMFAELADTTSPYFSRRVKILETVARCKCFVILLD 152

Query: 121 IDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETSLPLLEVVLWNLVKQ 180
           IDCNDLVL+MFN FFS+VR   E H  SL N +LS MTHI+NEE SLPL +V+L NLVK+
Sbjct: 153 IDCNDLVLEMFNIFFSIVR---ENHQRSLINDVLSIMTHILNEEASLPLSDVILRNLVKE 209

Query: 181 EKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCS 240
              +  AASQLA SVI++CAEKLEPF+CGFLTSC LDRDA++ +LKEFYHEI+FK+FQC+
Sbjct: 210 GTAASAAASQLAASVIQSCAEKLEPFICGFLTSCSLDRDAIDSELKEFYHEILFKVFQCA 269

Query: 241 PQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKS 300
           PQMLLAVIPNL QELL DQVDVRIKAVNLIG++ A P++ +A++Y  LF+EF  RFSDKS
Sbjct: 270 PQMLLAVIPNLTQELLTDQVDVRIKAVNLIGRLFALPEHHVAEKYHNLFIEFKNRFSDKS 329

Query: 301 AEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKF 360
            EVRL+ALRCAKACY+  P  KES E+L+A+E RLLDFDDRVR  AV+V CDLAR +LK+
Sbjct: 330 VEVRLSALRCAKACYMANPSGKESSELLSAVEGRLLDFDDRVRILAVVVVCDLARFNLKY 389

Query: 361 VPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKCCEGQMTVCDHFEQIPCKILML 420
              +L+S+A ERLRDKKIS+RKKAL KL+EVY+EYC KC E  +T+  HFEQIPCKILML
Sbjct: 390 FSAELLSKAVERLRDKKISVRKKALQKLMEVYQEYCNKCSESYLTIGGHFEQIPCKILML 449

Query: 421 CYDKDYKEFRPQNIERILVEDLFPV-LEVEESTRHWVHLFSLFTPLHLKALNCVLSQKKR 479
           CYDKD KEFR QN+E IL EDLFP  L VE+ TRHW+H FSLFTPLH+KALN +LSQK+R
Sbjct: 450 CYDKDCKEFRSQNMEPILAEDLFPARLSVEDRTRHWIHFFSLFTPLHVKALNSILSQKRR 509

Query: 480 FRSEMRYYLSVRKKEKGSCHDETHEQMKNSFVKMSASFPDPSKAEGCFQRLNEMKDNKIF 539
            ++EM+ YL++RKKEK S  +E  +++KNSF+KMSASFPDPSKAE CF +LN+MKDN IF
Sbjct: 510 LQNEMQSYLALRKKEKESGSEEMQKRIKNSFMKMSASFPDPSKAEECFHKLNQMKDNNIF 569

Query: 540 NSLEELLDNMTIKNAEILRDKFLKLIGNKHPEFEFLQLLTSKCLY-IFDSELVCCIVNGL 598
           NSLE LL   TI NA+  RDKFLK+IG+KHP FEFLQLL+SKC + IF SE V CI++ L
Sbjct: 570 NSLELLLVERTIINAQTTRDKFLKMIGDKHPHFEFLQLLSSKCSFNIFSSEHVRCILDHL 629

Query: 599 SSNRYADKHLEDSSINLLLAIISIFPSLLRGSEVQFQKLLERNGLINDKLIEVLAKAGPH 658
           SS+   +  LE SS NLLL II++FPSLLRG E QF+ LL+   +IND LIE LAKAGP+
Sbjct: 630 SSDAVGNGRLEASSANLLLTIINVFPSLLRGFEEQFRLLLQEKNMINDVLIEALAKAGPY 689

Query: 659 ISIKYSDIYPLLERLCLEGTRAQSKHAVSAIASLSGASEQFVFMELCKGLVDSLHCGRNI 718
           IS+K+SD YPLLE  CLEGTR QSK AVSAIASL G+SEQ +F +LCK LVDSLH G N 
Sbjct: 690 ISVKFSDFYPLLESACLEGTRIQSKQAVSAIASLIGSSEQLIFSKLCKELVDSLHRGWNT 749

Query: 719 PTVLQSLGCIAQYSVSAFESQSEDITRYIYENLIKV 754
           PT+LQSLGCIAQ+SV+AFES+  +I  YI++ + ++
Sbjct: 750 PTILQSLGCIAQHSVAAFESKYREIRSYIFQRIFQI 785

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|188509928|gb|ACD56617.1| hypothetical binding protein [Gossypioides kirkii] Back     alignment and taxonomy information
>gi|302141822|emb|CBI19025.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359492396|ref|XP_002284482.2| PREDICTED: sister chromatid cohesion protein PDS5 homolog A-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449519492|ref|XP_004166769.1| PREDICTED: LOW QUALITY PROTEIN: sister chromatid cohesion protein PDS5 homolog A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449449892|ref|XP_004142698.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356550859|ref|XP_003543800.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog A-like [Glycine max] Back     alignment and taxonomy information
>gi|297842537|ref|XP_002889150.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297334991|gb|EFH65409.1| binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|240254392|ref|NP_177883.5| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] gi|332197876|gb|AEE35997.1| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|12323390|gb|AAG51671.1|AC010704_15 hypothetical protein; 73483-63403 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query757
TAIR|locus:2169058 1607 AT5G47690 [Arabidopsis thalian 0.944 0.444 0.361 6.9e-118
UNIPROTKB|Q4QXM3 1323 pds5a-a "Sister chromatid cohe 0.727 0.416 0.277 1e-57
UNIPROTKB|Q4KLU7 1323 pds5a-b "Sister chromatid cohe 0.727 0.416 0.277 1.3e-57
UNIPROTKB|Q5F3V3 1330 PDS5A "Sister chromatid cohesi 0.727 0.414 0.275 2.8e-57
UNIPROTKB|F1NIQ3 1330 PDS5A "Sister chromatid cohesi 0.727 0.414 0.275 4.6e-57
RGD|1307094 1333 Pds5a "PDS5, regulator of cohe 0.727 0.413 0.277 4.3e-56
UNIPROTKB|Q29RF7 1337 PDS5A "Sister chromatid cohesi 0.727 0.412 0.277 5.5e-56
UNIPROTKB|I3LU95 1291 PDS5A "Uncharacterized protein 0.727 0.426 0.275 6e-56
UNIPROTKB|E2R7R4 1337 PDS5A "Uncharacterized protein 0.727 0.412 0.275 7e-56
ZFIN|ZDB-GENE-040426-1612 1321 pds5a "PDS5, regulator of cohe 0.722 0.414 0.264 1.1e-50
TAIR|locus:2169058 AT5G47690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
 Identities = 265/734 (36%), Positives = 420/734 (57%)

Query:    32 KPLRKSIIKHGLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKEL 91
             +P   ++IK  +L+  DKD++L VA+CVSE+ RI APE P+ DN ++ +F+LI+S F  L
Sbjct:    53 QPFLDAVIKPEILNHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVSAFAGL 112

Query:    92 GNTGCPFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHL--SSL 149
              +   P F +RV ILE VA+ +  V+MLD++C+DLV ++F  F  V R    P +  SS+
Sbjct:   113 NDVSGPSFGRRVLILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVAR-DDHPEIVFSSM 171

Query:   150 TNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCG 209
              N M+  +    +E+    LL ++L  L +   D   AA +LA+ VI +CA K+E  +  
Sbjct:   172 QNIMIVLLEE--SEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKVESDIKQ 229

Query:   210 FLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNL 269
             FL S  +  D+     +  YHE+I+ +++C+PQ L  V P L  ELL D+++ R+K V L
Sbjct:   230 FLISS-MSGDSRFSSSQIDYHEVIYDLYRCAPQALSGVAPYLTGELLADKLETRLKVVGL 288

Query:   270 IGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILA 329
             +G++ + P   +++ +  +F+EFLKR +D+  EVR+  L   K C L  P R E+ +I++
Sbjct:   289 VGELFSLPGRVISEEFDSIFLEFLKRLTDRVVEVRMAILDHIKDCLLSDPLRAEASQIIS 348

Query:   330 ALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLL 389
             AL  RLLD+D+ +R + V V CD++ S L  +P   +    ERLRDK I ++   + +L 
Sbjct:   349 ALCDRLLDYDENIRKQVVAVICDVSVSALTSIPVDTMKLVAERLRDKAILVKTYTMERLT 408

Query:   390 EVYREYCKKCCEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPV-LEV 448
             E++R YC +C +G++   D F  IP KIL   YDKD   FR   IE IL   LFP    V
Sbjct:   409 ELFRVYCLRCADGKVDTGD-FNWIPGKILRCLYDKD---FRSDTIEYILCSSLFPSDFSV 464

Query:   449 EESTRHWVHLFSLFTPLHLKALNCVLSQKKRFRSEMRYYLSVRKKEKGSCHDETHEQMKN 508
              +  +HW+ +FS F  +  KA   +L Q++R + EM+ YLS+++ ++ +   E  +++  
Sbjct:   465 RDKVKHWIQIFSGFDKVETKAFEKILEQRQRIQQEMQRYLSIKQTQQTADAPEIQKKILF 524

Query:   509 SFVKMSASFPDPSKAEGCFQRLNEMKDNKIFNSLEELLD-NMTIKNAEILRDKFLKLIGN 567
              F  MS +F DP K E  F  L+++KD  I+  L  LLD N +I  A  +RD  LK++  
Sbjct:   525 GFRVMSRAFSDPPKTEQNFLILDQLKDANIWKILTNLLDPNTSITQASRIRDDMLKILSE 584

Query:   568 KHPEFEFLQLLTSKCLYI-FDSELVCCIVNGLSSNRYADKHLEDXXXXXXXXXXXXF-PS 625
             KH  ++FL  L+ KC Y+ F  E V  I+  +S  + +   L              F PS
Sbjct:   585 KHSLYDFLSTLSIKCSYLLFSKEYVKEILAEVSVRKSSKNTLGIQPCMDFLGLLACFCPS 644

Query:   626 LLRGSEVQFQKLLERNG-LINDKLIEVLAKAG----PHISIKYSDIYPLLERLCLEGTRA 680
             L  G+E +    L+ +  ++ +  +++LAKAG     ++ +  S +  LLER+C+EG R 
Sbjct:   645 LFDGAEEELISFLKDDDEMMKEGTLKILAKAGGTIRENLIVLASSVDLLLERICVEGNRK 704

Query:   681 QSKHAVSAIASLSGASEQFVFMELCKGLVDSLHCGRNIPTVLQSLGCIAQYSVSAFESQS 740
             Q+K+AV A+AS++          L K LVD L   R  P VLQ LGCIAQ ++  +E++ 
Sbjct:   705 QAKYAVHALASITKDDGLKSLSVLYKRLVDMLEDKRYQPAVLQCLGCIAQIAMPVYETRE 764

Query:   741 EDITRYIYENLIKV 754
              ++  +I   ++K+
Sbjct:   765 SEVVEFIRSKILKL 778
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008150 "biological_process" evidence=ND
GO:0005739 "mitochondrion" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0005829 "cytosol" evidence=RCA;IDA
GO:0007067 "mitosis" evidence=RCA
UNIPROTKB|Q4QXM3 pds5a-a "Sister chromatid cohesion protein PDS5 homolog A-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KLU7 pds5a-b "Sister chromatid cohesion protein PDS5 homolog A-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3V3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIQ3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1307094 Pds5a "PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RF7 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LU95 PDS5A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7R4 PDS5A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1612 pds5a "PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_202722.1
annotation not avaliable (1298 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query757
pfam1364688 pfam13646, HEAT_2, HEAT repeats 4e-04
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information 
 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 19/104 (18%)

Query: 248 IPNLIQELLVDQ-VDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLN 306
           +  L++ LL D   +VR  A   +G++            PE     L+   D   EVR  
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGEL----------GDPEALPALLELLKDPDPEVRRA 50

Query: 307 ALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIVA 350
           A        LG   +    E L AL   L D DD V   A   A
Sbjct: 51  AAEA-----LG---KLGDPEALPALLELLQDDDDAVVRAAAASA 86

This family includes multiple HEAT repeats. Length = 88

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 757
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 100.0
KOG15251266 consensus Sister chromatid cohesion complex Cohesi 98.98
PTZ00429 746 beta-adaptin; Provisional 98.7
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.29
PTZ00429 746 beta-adaptin; Provisional 98.25
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.23
PRK09687280 putative lyase; Provisional 98.11
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.06
PRK09687280 putative lyase; Provisional 98.05
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 97.9
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 97.85
KOG2025 892 consensus Chromosome condensation complex Condensi 97.84
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.83
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 97.71
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.57
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 97.45
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.35
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 97.34
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.3
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.28
COG5096 757 Vesicle coat complex, various subunits [Intracellu 97.24
KOG0414 1251 consensus Chromosome condensation complex Condensi 97.05
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.96
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 96.92
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.83
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 96.83
COG5096 757 Vesicle coat complex, various subunits [Intracellu 96.76
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.71
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 96.6
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.59
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 96.37
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 96.3
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 96.17
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.12
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.07
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 95.94
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 95.93
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 95.89
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 95.85
KOG1242569 consensus Protein containing adaptin N-terminal re 95.83
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.46
PF14500262 MMS19_N: Dos2-interacting transcription regulator 95.22
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 95.09
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 95.03
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 95.02
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 94.98
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 94.97
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 94.82
KOG0212675 consensus Uncharacterized conserved protein [Funct 94.8
KOG2259 823 consensus Uncharacterized conserved protein [Funct 94.79
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 94.57
KOG04141251 consensus Chromosome condensation complex Condensi 94.53
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 94.48
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 94.44
PF1036392 DUF2435: Protein of unknown function (DUF2435) 94.26
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 94.2
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 94.0
COG5098 1128 Chromosome condensation complex Condensin, subunit 93.86
TIGR02270410 conserved hypothetical protein. Members are found 93.79
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 93.61
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 93.49
smart00638574 LPD_N Lipoprotein N-terminal Domain. 93.46
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 93.02
TIGR02270410 conserved hypothetical protein. Members are found 92.99
KOG2259823 consensus Uncharacterized conserved protein [Funct 92.9
COG1413335 FOG: HEAT repeat [Energy production and conversion 92.7
KOG2011 1048 consensus Sister chromatid cohesion complex Cohesi 92.34
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 92.24
COG5098 1128 Chromosome condensation complex Condensin, subunit 92.21
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 91.83
KOG2956516 consensus CLIP-associating protein [General functi 91.63
KOG12481176 consensus Uncharacterized conserved protein [Funct 91.58
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 91.27
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 91.01
PF14676158 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4 90.86
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 90.31
KOG1820815 consensus Microtubule-associated protein [Cytoskel 90.27
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 89.34
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 89.08
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 89.07
KOG2025 892 consensus Chromosome condensation complex Condensi 89.02
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 88.55
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 88.48
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 88.45
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 88.21
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 88.15
KOG1242569 consensus Protein containing adaptin N-terminal re 87.95
COG1413335 FOG: HEAT repeat [Energy production and conversion 87.78
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 86.99
smart00638574 LPD_N Lipoprotein N-terminal Domain. 86.48
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 86.26
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 86.07
KOG1243690 consensus Protein kinase [General function predict 85.26
KOG2933334 consensus Uncharacterized conserved protein [Funct 85.09
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 84.87
KOG0413 1529 consensus Uncharacterized conserved protein relate 83.88
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 83.12
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 82.93
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 82.86
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 82.47
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 82.04
PF1036392 DUF2435: Protein of unknown function (DUF2435) 81.88
KOG1820815 consensus Microtubule-associated protein [Cytoskel 81.86
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 80.09
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 80.07
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 80.04
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-112  Score=1023.65  Aligned_cols=730  Identities=33%  Similarity=0.497  Sum_probs=630.0

Q ss_pred             HhhhhhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHH
Q 039884            2 VENALSKIEQPLSPETSKKAEALKKLEAATKPLRKSIIKHGLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVF   81 (757)
Q Consensus         2 ~~~~l~~~~q~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~lL~hkd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF   81 (757)
                      ++++|+.++|.+.            ..+++.|++.+|++++||+|+|+|||+|||||+|||||||||||||++.||+|||
T Consensus        29 l~~~l~~~~qd~~------------~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf   96 (1266)
T KOG1525|consen   29 LANCLASLDQDNL------------DLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIF   96 (1266)
T ss_pred             HHHHHhhcccCch------------hHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence            5789999999973            4899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCCCcchhHHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHh
Q 039884           82 ELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHII  161 (757)
Q Consensus        82 ~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl~~Dl~~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI  161 (757)
                      ++|++||.||+|+.||||.|||||||+++++|.|++|.|.+|++++.++|++||+++|   ++|+.+|.+ |++||+.+|
T Consensus        97 ~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~---~~~~~~v~~-~~~i~~~li  172 (1266)
T KOG1525|consen   97 QLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLAR---KGHPKKVFN-MLDIAIMLI  172 (1266)
T ss_pred             HHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHh---ccccHHHHH-HHHHHHHHH
Confidence            9999999999999999999999999999999944444555799999999999999999   999999999 999999999


Q ss_pred             hcC--CChhHHHHHHHHhhccccCCcchHHHHHHHHHhhchhhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhc
Q 039884          162 NEE--TSLPLLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQC  239 (757)
Q Consensus       162 ~E~--~~~~lld~Il~~l~~~~~~~~~~a~~lA~~vi~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~  239 (757)
                      +|.  ++.++|++||.+|+++++++++.|+++|.++|..|++.+++.+++||++++....+....+..++|++|++||++
T Consensus       173 ~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~  252 (1266)
T KOG1525|consen  173 TEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRI  252 (1266)
T ss_pred             HhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHh
Confidence            996  567799999999999999999999999999999999999999999999999877767778888999999999999


Q ss_pred             CchhHHhhHHhhhhhhcCCChHHHHHHHHHHHHHhcCCCCchhhhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCC
Q 039884          240 SPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGP  319 (757)
Q Consensus       240 ~P~lL~~ViP~l~~eL~sd~~~~R~~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~  319 (757)
                      +|++|++|||||++||++|++.+|+.||.++|+||+.+++.++.+|+++|.+|||||+|++++||++||+++++|+.+||
T Consensus       253 ~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~  332 (1266)
T KOG1525|consen  253 APQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNP  332 (1266)
T ss_pred             hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHhh
Q 039884          320 FRKESREILAALESRLLDFDDRVRTEAVIVACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREYCKKC  399 (757)
Q Consensus       320 ~~~~~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~~~~~  399 (757)
                      +...+..+..+++.|..|+|++||..++.+.|+++.+.+..+++ +|+.++||+||||+.||++||++|+++|+.+|..+
T Consensus       333 ~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~  411 (1266)
T KOG1525|consen  333 SIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLR  411 (1266)
T ss_pred             hhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            98888888999999999999999999999999999999999999 99999999999999999999999999999877777


Q ss_pred             hcCchhhhhhhhchhHHHHhhhcccccccchhhhHHHHHHhccCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 039884          400 CEGQMTVCDHFEQIPCKILMLCYDKDYKEFRPQNIERILVEDLFPV-LEVEESTRHWVHLFSLFTPLHLKALNCVLSQKK  478 (757)
Q Consensus       400 ~~~~~~~~~~~~wIP~~il~~~y~~d~~~~r~~~ve~~l~e~LlP~-~~~~~R~~~l~~l~~~ld~~~~ka~~~i~~~k~  478 (757)
                      .+|+..++..|+|||++||++||.++.+ +| .+||++++++|+|+ +++++||++|+++|+++|..+.++|..|+++|.
T Consensus       412 ~~~~k~~t~~~swIp~kLL~~~y~~~~~-~r-~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q~  489 (1266)
T KOG1525|consen  412 SAGGKEITPPFSWIPDKLLHLYYENDLD-DR-LLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQS  489 (1266)
T ss_pred             ccCcccccccccccchhHHhhHhhcccc-HH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHHH
Confidence            8888999999999999999999999865 55 79999999999999 999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHhhhCCCchHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHhc--cchhHHHHHHhhhc-hhhHHHHH
Q 039884          479 RFRSEMRYYLSVRKKEKGSCHDETHEQMKNSFVKMSASFPDPSKAEGCFQRLNEM--KDNKIFNSLEELLD-NMTIKNAE  555 (757)
Q Consensus       479 ~~~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~ls~~fpd~~ka~~~l~~f~~~--~D~ri~~ll~~~~d-~~t~~~a~  555 (757)
                      ++|.+|+.||.++..++.++   .++++...|..++..||||+++....++|++.  .+..+...+..+.- -.+|+.+.
T Consensus       490 ~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~~~C~~l~  566 (1266)
T KOG1525|consen  490 RLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPSISCKELL  566 (1266)
T ss_pred             HHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            99999999999999886543   67899999999999999999999999998765  45566665555532 12333222


Q ss_pred             -HHHHHHHHHh---cCCCcHHHHHHHHHHhhh-hhcCh-hhHHHHHHhhhcCccc----------CchhhHHHHHHHHHH
Q 039884          556 -ILRDKFLKLI---GNKHPEFEFLQLLTSKCL-YIFDS-ELVCCIVNGLSSNRYA----------DKHLEDSSINLLLAI  619 (757)
Q Consensus       556 -~~~e~~~K~~---~~~~~~~~~~k~Ll~r~s-~~~n~-s~v~~ll~~~~~~~~~----------~~~~~~~a~~LL~~i  619 (757)
                       ..++-+.+.+   .++++...+.+.+..|.. +.++. +.+..++.....+..+          .+.....+..|+..+
T Consensus       567 ~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~l  646 (1266)
T KOG1525|consen  567 ITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEAL  646 (1266)
T ss_pred             HHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHh
Confidence             1233333332   334567899999999999 88887 7777777765442111          235667889999999


Q ss_pred             HhhCCcCCcccHHHHHHH--Hhhcc-CCchHHHHHHHhhCCccccCc----CcHHHHHHHHHhcCCcHHHHHHHHHHHhh
Q 039884          620 ISIFPSLLRGSEVQFQKL--LERNG-LINDKLIEVLAKAGPHISIKY----SDIYPLLERLCLEGTRAQSKHAVSAIASL  692 (757)
Q Consensus       620 S~~~P~lf~~~~~~L~~~--l~d~~-~~~~~~l~~l~k~~~~~~~~~----~~~~~~L~~~a~~Gtp~qAK~Av~~l~~~  692 (757)
                      |.++|.+|......+..+  +.+.. ...+.++..+-..+..+....    ..+.+.++++++.|+|.|||+|++|+..+
T Consensus       647 s~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~~~i~~~  726 (1266)
T KOG1525|consen  647 SSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAKRCIKAI  726 (1266)
T ss_pred             hhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHHHhhhhhHH
Confidence            999999999885443333  33322 245566666655553333322    25789999999999999999999999886


Q ss_pred             cCCch---hhHHHHHHHHHHhcc-CCCCCcchhHhHHHHHHhhChhhhh-hhhhhHHHHHHHhccc
Q 039884          693 SGASE---QFVFMELCKGLVDSL-HCGRNIPTVLQSLGCIAQYSVSAFE-SQSEDITRYIYENLIK  753 (757)
Q Consensus       693 ~~~~~---~~~~~~l~~~l~~~l-~~~~~l~t~L~sL~~ia~~~p~~fe-~~~~~I~~flik~vL~  753 (757)
                      ...+.   .++|.++.+.+...+ .+.+++++++++||+|+.+.|+.|. ....++..||+|++++
T Consensus       727 ~~s~~~~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~  792 (1266)
T KOG1525|consen  727 LQSKFCKLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLS  792 (1266)
T ss_pred             hhhhhhHHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhc
Confidence            66532   234445555444433 2347999999999999999995554 5555789999999853

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query757
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-13
2db0_A253 253AA long hypothetical protein; heat repeats, hel 6e-10
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 8e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-04
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-04
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 4e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 3e-05
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 3e-05
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 5e-05
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 7e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 3e-04
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 81.8 bits (201), Expect = 4e-16
 Identities = 75/514 (14%), Positives = 153/514 (29%), Gaps = 144/514 (28%)

Query: 4   NALSKIEQPLSPETSKKAEALKKLEAATKPLRKS--IIKHG--------LLHQ--NDKDI 51
           + L    Q  +     + +   KL  A   LR +  ++  G        +         +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 52  R---------LSVATCVSE---------LFRILAPEPPFEDNYLRGVFELIISLFKELGN 93
           +         L++  C S          L   + P      ++   +   I S+  EL  
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 94  TGCPFFSKRVK----ILEIVARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSL 149
                 SK  +    +L  V  +K      ++ C  L+   F      +   +  H+S  
Sbjct: 237 L---LKSKPYENCLLVLLNVQNAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISL- 291

Query: 150 TNHMLSTMTHIINEETSLPLLEVVLWNLVKQEKDSPYAASQ---LAVSVIRNCAEKLEPF 206
            +H   T+T     +    LL   L     + +D P          +S+I   AE +   
Sbjct: 292 -DHHSMTLT----PDEVKSLLLKYLDC---RPQDLPREVLTTNPRRLSII---AESIRDG 340

Query: 207 VCGFLTSCFLDRDAVE------------GDLKEFYHEI-IF----KIFQCSPQMLLAVI- 248
           +  +     ++ D +              + ++ +  + +F     I    P +LL++I 
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI----PTILLSLIW 396

Query: 249 PNLIQELLVDQVDVRIKAVNLIGKICAQPDNC-LADRYPELFVEFLKRFSDKSA-EVRL- 305
            ++I+       DV +    L      +          P +++E   +  ++ A    + 
Sbjct: 397 FDVIKS------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 306 ---NALRCAK-------------ACYLGGPFRK-ESREILAALESRLLDFDDRVRTEAVI 348
              N  +                  ++G   +  E  E +       LDF          
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR--------- 501

Query: 349 VACDLARSHLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREY-CKKCCEGQMTVC 407
                      F+ +K+  ++T       I       L+ L+ Y+ Y C           
Sbjct: 502 -----------FLEQKIRHDSTAWNASGSIL----NTLQQLKFYKPYICDN--------D 538

Query: 408 DHFEQIPCKILMLCYDKDYKEFRPQNIERILVED 441
             +E+               +F P+ IE  L+  
Sbjct: 539 PKYER---------LVNAILDFLPK-IEENLICS 562
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query757
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.23
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.01
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 98.97
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 98.94
1qgr_A876 Protein (importin beta subunit); transport recepto 98.93
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 98.85
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 98.83
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.82
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.81
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.73
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.65
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.53
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.49
1qgr_A876 Protein (importin beta subunit); transport recepto 98.46
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.45
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.44
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.43
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.41
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 98.37
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.26
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 98.2
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.18
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.17
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.13
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.07
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.03
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.02
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.97
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.96
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.93
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.92
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.9
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.89
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.81
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.78
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.77
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.59
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.5
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.43
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.4
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 97.38
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.35
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 97.33
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 97.27
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 97.27
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 97.21
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.11
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.81
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 96.8
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 96.77
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 96.72
2x19_B963 Importin-13; nuclear transport, protein transport; 96.67
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 96.46
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.41
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 96.29
2db0_A253 253AA long hypothetical protein; heat repeats, hel 96.28
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 96.08
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 95.94
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 95.72
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 95.65
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 95.45
2x1g_F971 Cadmus; transport protein, developmental protein, 95.44
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 95.39
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 95.02
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 94.96
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 94.93
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 94.87
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 94.8
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 94.76
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 94.62
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 94.56
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 94.29
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 94.02
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 92.71
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 92.71
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 92.01
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 91.88
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 91.77
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 91.35
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 90.06
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 88.46
2x19_B963 Importin-13; nuclear transport, protein transport; 88.09
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 86.98
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 86.96
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 86.22
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 86.09
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 85.02
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 84.93
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 83.77
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 83.53
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 82.04
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 81.21
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 80.67
3nmz_A458 APC variant protein; protein-protein complex, arma 80.64
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
Probab=99.23  E-value=3.4e-07  Score=110.30  Aligned_cols=329  Identities=13%  Similarity=0.139  Sum_probs=196.3

Q ss_pred             cCCCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHhhhhhhhhccCC--
Q 039884           45 HQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDID--  122 (757)
Q Consensus        45 ~hkd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl~~Dl~--  122 (757)
                      .+.|.+||.+.|.-|-..++-+=+  ++++++...|-..++..   |.+++ + . =+..+-+.++.+=.    .|-+  
T Consensus        58 ~~~~~~vR~~a~~~Lkn~i~~~w~--~~~~~~~~~ik~~ll~~---l~~~~-~-~-vr~~~a~~i~~ia~----~~~~~~  125 (852)
T 4fdd_A           58 KSEDEPTRSLSGLILKNNVKAHFQ--NFPNGVTDFIKSECLNN---IGDSS-P-L-IRATVGILITTIAS----KGELQN  125 (852)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTTSGG--GCCHHHHHHHHHHHHTT---TTCSS-H-H-HHHHHHHHHHHHHH----HTTTTT
T ss_pred             CCCChHHHHHHHHHHHHHHHHccC--CCCHHHHHHHHHHHHHH---HcCCC-H-H-HHHHHHHHHHHHHH----hcCccc
Confidence            678999999999888777643211  24444444454555444   55543 2 1 22233333333311    1222  


Q ss_pred             chHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcCCC-------hhHHHHHHHHhhccccCCcchHHHHHHHH
Q 039884          123 CNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETS-------LPLLEVVLWNLVKQEKDSPYAASQLAVSV  195 (757)
Q Consensus       123 ~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~~~-------~~lld~Il~~l~~~~~~~~~~a~~lA~~v  195 (757)
                      -.+++..+++    .++   .+. ..+...-+.++..+.++...       ...++.++..|+..-++.++.-+.-|...
T Consensus       126 wp~ll~~L~~----~l~---~~~-~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~a  197 (852)
T 4fdd_A          126 WPDLLPKLCS----LLD---SED-YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVAC  197 (852)
T ss_dssp             CTTHHHHHHH----HHS---CSS-HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHH
T ss_pred             cHHHHHHHHH----HHc---CCC-HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            2356666654    443   222 23444455555666554221       12366677666654444445545555444


Q ss_pred             Hhhch----hhhhHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcCchhHHh----hHHhhhhhhcCCChHHHHHHH
Q 039884          196 IRNCA----EKLEPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCSPQMLLA----VIPNLIQELLVDQVDVRIKAV  267 (757)
Q Consensus       196 i~~~~----~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~P~lL~~----ViP~l~~eL~sd~~~~R~~At  267 (757)
                      +....    ..+.+.+..++..+..-....+.++++.+.+.+..+.+..|+.+..    ++|.+-.-+..+++.+|..|.
T Consensus       198 L~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~  277 (852)
T 4fdd_A          198 VNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEAC  277 (852)
T ss_dssp             HHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence            43322    2222223333333221111123467778888999999988877654    566666677788999999999


Q ss_pred             HHHHHHhcCCCC-chh-hhcHHHHHHHHhhc-----------cC-----------CCHhHHHHHHHHhHHHHhcCCCcch
Q 039884          268 NLIGKICAQPDN-CLA-DRYPELFVEFLKRF-----------SD-----------KSAEVRLNALRCAKACYLGGPFRKE  323 (757)
Q Consensus       268 ~llG~mfs~~~~-~~~-~~~~~~w~~fL~R~-----------~D-----------~s~~VR~~~v~~~~~il~~~~~~~~  323 (757)
                      +.++.+...+.. ++. ...+.+....+...           .|           .+-.||....++...+....+. ..
T Consensus       278 e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~  356 (852)
T 4fdd_A          278 EFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-EL  356 (852)
T ss_dssp             HHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GG
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HH
Confidence            999987543210 111 11123333333333           33           4567898877777665554443 34


Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc---CCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHH
Q 039884          324 SREILAALESRLLDFDDRVRTEAVIVACDLARSHL---KFVPEKLISEATERLRDKKISIRKKALLKLLEVYRE  394 (757)
Q Consensus       324 ~~ei~~~L~~rL~D~DekVR~aaV~~i~~l~~~~~---~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~  394 (757)
                      ...+++.+...+.|++++||.+|+.+++.++....   ...-+.++..+...+.|.++.||..|+..||++-..
T Consensus       357 ~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  430 (852)
T 4fdd_A          357 LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW  430 (852)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999985332   222367889999999999999999999999987653
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 757
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-06
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-04
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 2e-06
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 0.001
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 3e-05
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 1e-04
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 9e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 0.003
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 2e-06
 Identities = 46/290 (15%), Positives = 91/290 (31%), Gaps = 27/290 (9%)

Query: 49   KDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEI 108
            K    S+A CV+ L R    E             ++    +++ N+      + + +L +
Sbjct: 790  KQSYYSIAKCVAALTRACPKE----------GPAVVGQFIQDVKNSRSTDSIRLLALLSL 839

Query: 109  VARSKCFVIMLDIDCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETSLP 168
                    +   ++   ++L+ F++    V+  +   L S++   L              
Sbjct: 840  GEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPE------------ 887

Query: 169  LLEVVLWNLVKQEKDSPYAASQLAVSVIRNCAEKLEPFVCGFLTSCFLDRDAVEGDLKEF 228
             L  VL  +  Q K        L   +       L+P+V           +  E   +  
Sbjct: 888  YLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNV 947

Query: 229  YHEIIFKIFQCSPQMLLAVIPNLIQELLVDQVDVRIKAVNLIGKICAQPDNCLADRYPEL 288
              E + K+    P+    ++P L   L+      R   V  +    +     +       
Sbjct: 948  VAECLGKLTLIDPE---TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNC 1004

Query: 289  FVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDF 338
              +FLK   D    VR  AL    +     P     R++L  +   L + 
Sbjct: 1005 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKP--SLIRDLLDTVLPHLYNE 1052
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query757
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.03
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.85
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 98.84
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 98.75
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.74
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.73
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.45
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.16
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.15
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.13
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.1
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.03
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.64
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 97.53
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 97.39
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.3
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.22
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.21
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.13
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.06
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.79
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.65
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 96.43
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 96.33
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.79
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 94.56
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 93.38
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 92.31
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 91.02
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 90.38
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 89.84
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 89.5
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 89.13
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 86.9
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 83.1
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.7e-08  Score=108.10  Aligned_cols=327  Identities=13%  Similarity=0.114  Sum_probs=195.7

Q ss_pred             hcccCCCchhHHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHhhhhhhhhccC
Q 039884           42 GLLHQNDKDIRLSVATCVSELFRILAPEPPFEDNYLRGVFELIISLFKELGNTGCPFFSKRVKILEIVARSKCFVIMLDI  121 (757)
Q Consensus        42 ~lL~hkd~~Vr~~~acCl~dIlRi~APdaPy~d~~LkdIF~l~i~~~~~L~d~~~~~f~~~~~lLe~la~vks~vl~~Dl  121 (757)
                      .++.+.|..||--.+-|+..|..-..      .+++..+|.   ..+.+|.+.  +++..+.      +....+..+..-
T Consensus        94 ~l~~~~~~~Vr~~a~~~l~~i~~~~~------~~~~~~~l~---p~i~~L~~~--~~~~~r~------~a~~ll~~~~~~  156 (588)
T d1b3ua_          94 SLATVEETVVRDKAVESLRAISHEHS------PSDLEAHFV---PLVKRLAGG--DWFTSRT------SACGLFSVCYPR  156 (588)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHTTSC------HHHHHHTHH---HHHHHHHTC--SSHHHHH------HHGGGHHHHTTT
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHhCC------HHHHHHHHH---HHHHHHhcc--cchHHHH------HHHHHHHHHHHH
Confidence            35566777788777777777765422      233433332   223333332  2333322      222222233332


Q ss_pred             CchHHHHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHhhcCCChhHHHH---HHHHhhccccCCcchHHHHHHHHHhh
Q 039884          122 DCNDLVLQMFNNFFSVVRLCSEPHLSSLTNHMLSTMTHIINEETSLPLLEV---VLWNLVKQEKDSPYAASQLAVSVIRN  198 (757)
Q Consensus       122 ~~~~li~~lF~~ff~~v~~~~~~~~~~v~~~m~~Il~~vI~E~~~~~lld~---Il~~l~~~~~~~~~~a~~lA~~vi~~  198 (757)
                      -.++...+++..+.....    +....|...+...+..+............   ++..+..   +..+.-+..|.+.+..
T Consensus       157 ~~~~~~~~l~~~~~~l~~----D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~---d~~~~vr~~a~~~l~~  229 (588)
T d1b3ua_         157 VSSAVKAELRQYFRNLCS----DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLAS---DEQDSVRLLAVEACVN  229 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHT----CSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHT---CSCHHHHTTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc---CCchhhHHHHHHHHHH
Confidence            234667778888888764    44456777777777777654322222222   2333333   2223333333333322


Q ss_pred             chhhh-----hHHHHHHhhhhccCCCccccchHHHHHHHHHHHhhcC-chhH-HhhHHhhhhhhcCCChHHHHHHHHHHH
Q 039884          199 CAEKL-----EPFVCGFLTSCFLDRDAVEGDLKEFYHEIIFKIFQCS-PQML-LAVIPNLIQELLVDQVDVRIKAVNLIG  271 (757)
Q Consensus       199 ~~~~l-----~~~i~~~~~~~~~~~~~~~~~l~~~~~eli~el~~~~-P~lL-~~ViP~l~~eL~sd~~~~R~~At~llG  271 (757)
                      .+..+     ...+...+...+.+.   +..++..+-+.+.++.... |+.. ..++|.+..-+...+..+|..|...+|
T Consensus       230 i~~~~~~~~~~~~i~~~l~~~~~D~---~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~  306 (588)
T d1b3ua_         230 IAQLLPQEDLEALVMPTLRQAAEDK---SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVK  306 (588)
T ss_dssp             HHHHSCHHHHHHHTHHHHHHHHTCS---SHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             hhccCCHHHHHHHHHHHHHHhcccc---cHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHH
Confidence            22211     122222233322222   2245555556666665433 3333 347899999999999999999999999


Q ss_pred             HHhcCCCCchh--hhcHHHHHHHHhhccCCCHhHHHHHHHHhHHHHhcCCCcchHHHHHHHHHHhhcCCChhHHHHHHHH
Q 039884          272 KICAQPDNCLA--DRYPELFVEFLKRFSDKSAEVRLNALRCAKACYLGGPFRKESREILAALESRLLDFDDRVRTEAVIV  349 (757)
Q Consensus       272 ~mfs~~~~~~~--~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ei~~~L~~rL~D~DekVR~aaV~~  349 (757)
                      .++..-+....  ...+.++..+.+...|.++.||.........+....+.......+.+.+...+.|.++.||..++..
T Consensus       307 ~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~  386 (588)
T d1b3ua_         307 EFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN  386 (588)
T ss_dssp             HHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTT
T ss_pred             HHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            99865332221  2335678888889999999999988665554432222222344678888899999999999999998


Q ss_pred             HHHhhhh-ccCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHH
Q 039884          350 ACDLARS-HLKFVPEKLISEATERLRDKKISIRKKALLKLLEVYREY  395 (757)
Q Consensus       350 i~~l~~~-~~~~v~~~ll~~l~eR~rDKk~~VR~~A~~~L~~lY~~~  395 (757)
                      +..+... ....+.+.++..+.+-+.|++|.||..++..++.+....
T Consensus       387 l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~  433 (588)
T d1b3ua_         387 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL  433 (588)
T ss_dssp             CHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc
Confidence            8776642 223445678888999999999999999999999987653
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure