Citrus Sinensis ID: 039906

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIRS
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHcccccccccccccccEEEEEEccccEEEEEEEEcccccHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccEEEEEEEHcccHHHHHHHHHHHHHHcccccccccEccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGIRLPGFFLAKQILRQSVLNaekgastsldvpkGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEfgfnhsmggltipcredtftditSQLIRS
Flexible Loop (DISEMBL)
MGIRLPGFFLAKQILRQSVLNAEKgastsldvpkGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHsmggltipcredtftditsqlirs
Low Complexity Region (SEG)
MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIRS
Disordered region (IsUnstruct)
****LPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDI*******
Disordered Region (DISOPRED)
MGIR***FFL*************************FLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLI**
Disordered Region (DISEMBL)
MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIRS
Disordered Region (DISPRO)
*GIRLPGFFLAKQILRQSVLNA*****TSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
P33080	92	Auxin-induced protein X10	no	no	0.89	0.967	0.577	8e-27
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.89	0.967	0.597	5e-26
P33083	90	Auxin-induced protein 6B	no	no	0.89	0.988	0.567	6e-25
P33079	93	Auxin-induced protein 10A	no	no	0.9	0.967	0.546	7e-25
P33081	82	Auxin-induced protein 15A	no	no	0.81	0.987	0.577	5e-24
P33082	82	Auxin-induced protein X15	no	no	0.81	0.987	0.546	3e-23

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score =  119 bits (297), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 74/97 (76%), Gaps = 8/97 (8%)

Query: 1  MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPL 60
          MG RLPG       +R++ + A + +S S++VPKG+L VYVG  +M+RFLIPVSYLNQP 
Sbjct: 1  MGFRLPG-------IRKTSIAANQASSKSVEVPKGYLVVYVG-DKMRRFLIPVSYLNQPS 52

Query: 61 FQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQL 97
          FQ+LL++ EEEFG++H MGGLTIPC+ED F  +TS L
Sbjct: 53 FQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHL 89

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 71/97 (73%), Gaps = 8/97 (8%)

Query: 1  MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPL 60
          MG RLPG       +R+++    + +S  LD PKG+LAVYVG   MKRF+IPVS+LNQPL
Sbjct: 1  MGFRLPG-------IRKTLSARNEASSKVLDAPKGYLAVYVG-ENMKRFVIPVSHLNQPL 52

Query: 61 FQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQL 97
          FQ+LLS+ EEEFG++H MGGLTIPC ED F  ITS L
Sbjct: 53 FQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCL 89

Vigna radiata var. radiata (taxid: 3916)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 72/97 (74%), Gaps = 8/97 (8%)

Query: 1  MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPL 60
          MG RLPG       +R++  +A + +S ++DV KG+LAVYVG  +M+RF+IPVSYLN+P 
Sbjct: 1  MGFRLPG-------IRKASFSANQASSKAVDVEKGYLAVYVG-EKMRRFVIPVSYLNKPS 52

Query: 61 FQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQL 97
          FQ+LLS+ EEEFG++H  GGLTIPC ED F  ITS L
Sbjct: 53 FQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFL 89

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 71/97 (73%), Gaps = 7/97 (7%)

Query: 1  MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPL 60
          MG R+ G      I+R++     + AS  +DVPKG+ AVYVG  +M+RF IPVSYLN+P 
Sbjct: 1  MGFRIAG------IVRRTSFYTTQAASKRVDVPKGYAAVYVG-DKMRRFTIPVSYLNEPS 53

Query: 61 FQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQL 97
          FQELLS+ EEEFG++H MGGLTIPC+E+ F ++T+ L
Sbjct: 54 FQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHL 90

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 66/97 (68%), Gaps = 16/97 (16%)

Query: 1  MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPL 60
          MG RLPG                + AS + D PKG+LAVYVG  ++KRF+IPVSYLNQP 
Sbjct: 1  MGFRLPGI---------------RKASKAADAPKGYLAVYVG-EKLKRFVIPVSYLNQPS 44

Query: 61 FQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQL 97
          FQ+LLS+ EEEFG++H MGGLTIPC ED F  ITS L
Sbjct: 45 FQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCL 81

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 66/97 (68%), Gaps = 16/97 (16%)

Query: 1  MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPL 60
          MG RLPG                + AS ++D PKG+LAVYVG  +MKRF+IPVSY+NQP 
Sbjct: 1  MGFRLPGI---------------RKASNAVDAPKGYLAVYVG-EKMKRFVIPVSYMNQPS 44

Query: 61 FQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQL 97
          FQ+LL++ EEEFG++H MGGLTIPC E+ F  IT  L
Sbjct: 45 FQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQRITCCL 81

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
224080528	99	SAUR family protein [Populus trichocarpa	0.91	0.919	0.725	1e-32
224103293	99	SAUR family protein [Populus trichocarpa	0.98	0.989	0.707	1e-31
224103287	98	SAUR family protein [Populus trichocarpa	0.97	0.989	0.676	4e-31
224080530	99	SAUR family protein [Populus trichocarpa	0.91	0.919	0.725	2e-30
224103297	91	SAUR family protein [Populus trichocarpa	0.91	1.0	0.66	6e-29
356517873	100	PREDICTED: auxin-induced protein 10A5-li	0.97	0.97	0.670	2e-28
356508118	106	PREDICTED: auxin-induced protein 10A5-li	0.98	0.924	0.653	2e-28
388490922	100	unknown [Lotus japonicus]	0.99	0.99	0.636	3e-28
2924327	99	hypothetical protein [Malus x domestica]	0.97	0.979	0.597	8e-28
359476765	94	PREDICTED: auxin-induced protein 10A5 [V	0.94	1.0	0.6	1e-27

>gi|224080528|ref|XP_002306151.1| SAUR family protein [Populus trichocarpa] gi|222849115|gb|EEE86662.1| SAUR family protein [Populus trichocarpa]

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/91 (72%), Positives = 76/91 (83%)

Query: 10  LAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVE 69
           LAKQILR+SV NA K AS SLDVPKGFLAVY+G  + KRF++PVSYLN+P FQ+LL++ E
Sbjct: 9   LAKQILRRSVWNASKPASRSLDVPKGFLAVYIGEREKKRFVVPVSYLNEPSFQDLLTKAE 68

Query: 70  EEFGFNHSMGGLTIPCREDTFTDITSQLIRS 100
           EEFGFNH MGGLTIPCRED F D+ S L RS
Sbjct: 69  EEFGFNHPMGGLTIPCREDKFIDVLSSLSRS 99

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103293|ref|XP_002312998.1| SAUR family protein [Populus trichocarpa] gi|222849406|gb|EEE86953.1| SAUR family protein [Populus trichocarpa]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/99 (70%), Positives = 78/99 (78%), Gaps = 1/99 (1%)

Query: 1  MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPL 60
          M IRL GF LAKQ LR+ V  A K AS S DVPKGFLAVYVG T+ KRF++PVSYLNQ  
Sbjct: 1  MAIRLLGF-LAKQSLRRPVSCAHKAASKSSDVPKGFLAVYVGETEKKRFVVPVSYLNQAS 59

Query: 61 FQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIR 99
          FQ+LLS+ EEEFGF+H MGGLTIPC EDTF D+TS L R
Sbjct: 60 FQDLLSKAEEEFGFDHPMGGLTIPCAEDTFLDVTSSLSR 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103287|ref|XP_002312996.1| SAUR family protein [Populus trichocarpa] gi|222849404|gb|EEE86951.1| SAUR family protein [Populus trichocarpa]

 Score =  138 bits (347), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/99 (67%), Positives = 78/99 (78%), Gaps = 2/99 (2%)

Query: 1  MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPL 60
          M IRLPG  LAKQ LR+S   A K +S  LDVPKGFLAVYVG T+ KRF++PVSYLNQP 
Sbjct: 1  MAIRLPG--LAKQSLRRSFSTANKASSKYLDVPKGFLAVYVGETEKKRFVVPVSYLNQPS 58

Query: 61 FQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIR 99
          FQ+LLS+ E+EFGF+H MGGLTIPC E+TF  +TS L R
Sbjct: 59 FQDLLSKAEDEFGFDHPMGGLTIPCAEETFLHVTSSLSR 97

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080530|ref|XP_002306152.1| SAUR family protein [Populus trichocarpa] gi|222849116|gb|EEE86663.1| SAUR family protein [Populus trichocarpa]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/91 (72%), Positives = 72/91 (79%)

Query: 10  LAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVE 69
           LAKQIL +SV    K AS S DVPKGFLAVYVG    KRF++PVSYLN+P FQ+LLS+ E
Sbjct: 9   LAKQILCRSVWITNKSASRSSDVPKGFLAVYVGEMDKKRFVVPVSYLNEPSFQDLLSKAE 68

Query: 70  EEFGFNHSMGGLTIPCREDTFTDITSQLIRS 100
           EEFGFNH MGGLTIPCREDTF DI S L RS
Sbjct: 69  EEFGFNHPMGGLTIPCREDTFIDILSSLSRS 99

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103297|ref|XP_002313000.1| SAUR family protein [Populus trichocarpa] gi|222849408|gb|EEE86955.1| SAUR family protein [Populus trichocarpa]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 76/100 (76%), Gaps = 9/100 (9%)

Query: 1   MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPL 60
           M IRL G  LAKQI R+S        S S DVPKGF+AVYVG T+ KRF++PVSYLNQP+
Sbjct: 1   MAIRLTGS-LAKQIFRRS--------SKSFDVPKGFVAVYVGETEKKRFVVPVSYLNQPI 51

Query: 61  FQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIRS 100
           FQ+LL + EEEFGF+H MGGLTIPCREDTF  +TS L RS
Sbjct: 52  FQDLLCKAEEEFGFDHPMGGLTIPCREDTFIHVTSSLSRS 91

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517873|ref|XP_003527610.1| PREDICTED: auxin-induced protein 10A5-like [Glycine max]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 72/97 (74%)

Query: 1  MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPL 60
          M IRLP    AK ILR+S L A   A+TSLDVPKG  AVYVG  + KRF+IPVSYLNQP 
Sbjct: 1  MAIRLPSILSAKYILRRSNLFANHAATTSLDVPKGHFAVYVGEGEKKRFVIPVSYLNQPS 60

Query: 61 FQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQL 97
          FQELLS  EEEFGF+H MGGL IPC E+ F +ITS L
Sbjct: 61 FQELLSIAEEEFGFSHPMGGLIIPCTEEIFLNITSGL 97

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508118|ref|XP_003522807.1| PREDICTED: auxin-induced protein 10A5-like [Glycine max]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 73/98 (74%)

Query: 1  MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPL 60
          M IRLP    AK ILR+S L A   A+TSLDVPKG  AVYVG  + +R++IPVSYLNQP 
Sbjct: 1  MAIRLPSVLSAKYILRRSNLFANHAATTSLDVPKGHFAVYVGEGEKRRYVIPVSYLNQPS 60

Query: 61 FQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLI 98
          FQELLS  EEEFGF+H MGGL IPC E+ F +ITS LI
Sbjct: 61 FQELLSIAEEEFGFSHPMGGLIIPCTEENFLNITSGLI 98

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490922|gb|AFK33527.1| unknown [Lotus japonicus]

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 73/99 (73%)

Query: 1  MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPL 60
          M IRL     AK+ILR S L A + A+TSLDVPKG+ AVYVG ++ KRF+IPVS LNQP 
Sbjct: 1  MAIRLSSALSAKRILRGSSLFANQAAATSLDVPKGYFAVYVGESEKKRFVIPVSLLNQPS 60

Query: 61 FQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIR 99
          FQELLS  EEEFGF+H MGGL IPC ED F ++ S L R
Sbjct: 61 FQELLSAAEEEFGFSHPMGGLIIPCTEDIFVEVASGLHR 99

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2924327|emb|CAB07785.1| hypothetical protein [Malus x domestica]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 76/97 (78%)

Query: 1  MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPL 60
          MG RLPG   AK+ L +S+ N+++ AS +LD+PKG+ AVY G  Q KRF+IP+SYLN PL
Sbjct: 1  MGFRLPGIVSAKRSLIRSLSNSKQTASKTLDIPKGYFAVYAGERQKKRFVIPISYLNDPL 60

Query: 61 FQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQL 97
          FQ+LLS+ EEEFG++H MGG+TIPC E TF  +TS+L
Sbjct: 61 FQDLLSQAEEEFGYDHPMGGITIPCSEYTFLHLTSRL 97

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476765|ref|XP_002271529.2| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 74/100 (74%), Gaps = 6/100 (6%)

Query: 1   MGIRLPGFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPL 60
           MGI LP    AKQIL+ SV      +ST+ +VPKG  AVYVG T+ KRF++P+SYLN P 
Sbjct: 1   MGIHLPSIVQAKQILKLSV------SSTTAEVPKGHFAVYVGETEKKRFVVPISYLNNPS 54

Query: 61  FQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIRS 100
           FQ+LLS  EEEFGFNH MGG+TIPC+E++F D+TS L  S
Sbjct: 55  FQKLLSHAEEEFGFNHPMGGVTIPCKEESFIDLTSHLNSS 94

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	0.96	0.969	0.608	4.5e-27
TAIR|locus:2079389	96	SAUR29 "AT3G03820" [Arabidopsi	0.87	0.906	0.645	1.6e-24
TAIR|locus:2172299	90	SAUR24 "AT5G18080" [Arabidopsi	0.87	0.966	0.595	8.7e-24
TAIR|locus:2161558	88	AT5G18030 "AT5G18030" [Arabido	0.83	0.943	0.635	1.4e-23
TAIR|locus:4515103510	89	AT4G38825 "AT4G38825" [Arabido	0.74	0.831	0.675	2.3e-23
TAIR|locus:2161543	91	SAUR20 "AT5G18020" [Arabidopsi	0.83	0.912	0.620	4.8e-23
TAIR|locus:2161573	90	SAUR22 "AT5G18050" [Arabidopsi	0.83	0.922	0.620	6.1e-23
TAIR|locus:2161518	90	SAUR23 "AT5G18060" [Arabidopsi	0.87	0.966	0.590	6.1e-23
TAIR|locus:2079344	93	SAUR26 "AT3G03850" [Arabidopsi	0.83	0.892	0.633	1e-22
TAIR|locus:2161538	90	SAUR19 "AT5G18010" [Arabidopsi	0.81	0.9	0.623	3.4e-22

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 59/97 (60%), Positives = 75/97 (77%)

Query:     1 MGIRLPGFFLA-KQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQP 59
             M IR+P    + KQILRQ+ L +   +S+SLDVPKG+LAVYVG   MKRF++PVSYL+QP
Sbjct:     1 MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query:    60 LFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQ 96
              FQ+LL + EEEFGF+H MGGLTIPC E+ F D+ S+
Sbjct:    61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASR 97

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2079389 SAUR29 "AT3G03820" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 60/93 (64%), Positives = 66/93 (70%)

Query:     7 GFFLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMK--RFLIPVSYLNQPLFQEL 64
             GF  AK+IL  SV    K  S     PKGFLAVYVG +Q K  R L+PVSYLNQPLFQ L
Sbjct:     6 GFMAAKKILGGSVAGTRKETSA----PKGFLAVYVGESQRKKQRHLVPVSYLNQPLFQAL 61

Query:    65 LSRVEEEFGFNHSMGGLTIPCREDTFTDITSQL 97
             L + EEEFGFNH MGGLTIPC EDTF  +TSQ+
Sbjct:    62 LIKAEEEFGFNHPMGGLTIPCPEDTFLTVTSQI 94

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2172299 SAUR24 "AT5G18080" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 53/89 (59%), Positives = 68/89 (76%)

Query:     9 FLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRV 68
             F+   +  + +L+   GA ++   PKGFLAVYVG +Q KR+L+PVSYLNQP FQ LLS+ 
Sbjct:     3 FVRSLLGAKKILSRSTGAGSA--APKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKS 60

Query:    69 EEEFGFNHSMGGLTIPCREDTFTDITSQL 97
             EEEFGF+H MGGLTIPC EDTF ++TS+L
Sbjct:    61 EEEFGFDHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161558 AT5G18030 "AT5G18030" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 54/85 (63%), Positives = 68/85 (80%)

Query:    15 LRQSVLNAEK--GASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEF 72
             L +S+L A+K    ST+   PKGFLAVYVG +Q KR+L+P+SYL+QP FQ LLS+ EEEF
Sbjct:     3 LVRSLLGAKKILSRSTASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEF 62

Query:    73 GFNHSMGGLTIPCREDTFTDITSQL 97
             GF+H MGGLTIPC EDTF ++TS+L
Sbjct:    63 GFDHPMGGLTIPCPEDTFINVTSRL 87

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:4515103510 AT4G38825 "AT4G38825" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 50/74 (67%), Positives = 60/74 (81%)

Query:    24 KGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTI 83
             +G S +   PKGFLAVYVG +QMKR+++PVSYLNQP FQ LLS+ E+EFGF+H MGGLTI
Sbjct:    15 QGRSMAASTPKGFLAVYVGESQMKRYIVPVSYLNQPSFQALLSKSEQEFGFDHPMGGLTI 74

Query:    84 PCREDTFTDITSQL 97
             PC  DTF  +TSQL
Sbjct:    75 PCPVDTFITVTSQL 88

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 54/87 (62%), Positives = 66/87 (75%)

Query:    17 QSVLNAEKGASTSLDV----PKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEF 72
             +S+L A+K  S S       PKGFLAVYVG +Q KR+L+P+SYLNQP FQ LLS+ EEEF
Sbjct:     5 RSLLGAKKILSRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEF 64

Query:    73 GFNHSMGGLTIPCREDTFTDITSQLIR 99
             GF+H MGGLTIPC EDTF ++TS+  R
Sbjct:    65 GFDHPMGGLTIPCPEDTFINVTSRFQR 91

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161573 SAUR22 "AT5G18050" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 54/87 (62%), Positives = 67/87 (77%)

Query:    15 LRQSVLNAEKGASTSLDV----PKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEE 70
             L +S+L A+K  S S       PKGFLAVYVG +Q KR+L+P+SYLNQP FQ LLS+ E+
Sbjct:     3 LVRSLLGAKKILSRSTAAVSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSED 62

Query:    71 EFGFNHSMGGLTIPCREDTFTDITSQL 97
             EFGF+H MGGLTIPC EDTF ++TS+L
Sbjct:    63 EFGFDHPMGGLTIPCHEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161518 SAUR23 "AT5G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 52/88 (59%), Positives = 66/88 (75%)

Query:    10 LAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVE 69
             L + +L    + +   A+ S   PKGFLAVYVG +Q KR+L+P+SYLNQP FQ LLS+ E
Sbjct:     3 LVRSLLVAKKILSRSAAAVSAP-PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSE 61

Query:    70 EEFGFNHSMGGLTIPCREDTFTDITSQL 97
             EEFGF+H MGGLTIPC EDTF ++TS+L
Sbjct:    62 EEFGFDHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2079344 SAUR26 "AT3G03850" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 57/90 (63%), Positives = 65/90 (72%)

Query:     9 FLAKQILRQSVLNAEKGASTSLDVPKGFLAVYVGVTQMK-RFLIPVSYLNQPLFQELLSR 67
             F AK+IL  S++   K        PKGFLAVYVG +Q K R  +PVSYLNQPLFQ+LLS+
Sbjct:     8 FSAKKILGGSLVKTSKAP------PKGFLAVYVGESQKKQRHFVPVSYLNQPLFQDLLSK 61

Query:    68 VEEEFGFNHSMGGLTIPCREDTFTDITSQL 97
              EEEFGF+H MGGLTIPC  DTF  ITSQL
Sbjct:    62 CEEEFGFDHPMGGLTIPCPVDTFISITSQL 91

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161538 SAUR19 "AT5G18010" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 53/85 (62%), Positives = 66/85 (77%)

Query:    17 QSVLNAEK--GASTSLD--VPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEF 72
             +S+L A+K    ST+     PKGFLAVYVG +Q KR+L+P+SYL+QP FQ LLS+ EEEF
Sbjct:     5 RSLLGAKKILSRSTAAGSAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEF 64

Query:    73 GFNHSMGGLTIPCREDTFTDITSQL 97
             GF H MGGLTIPC EDTF ++TS+L
Sbjct:    65 GFAHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32295	ARG7_VIGRR	No assigned EC number	0.5979	0.89	0.9673	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: SAUR70 SAUR family protein (97 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	100
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	1e-36
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	2e-28
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	5e-27
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	2e-24

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  118 bits (299), Expect = 1e-36
 Identities = 48/100 (48%), Positives = 60/100 (60%), Gaps = 5/100 (5%)

Query: 1  MGIRLPGFFLAKQILRQSVLNAEKG---ASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLN 57
          M  RL     AK+ +  +     +G    S+S DVPKG  AVYVG  + +RF++P+SYLN
Sbjct: 1  MASRLKKASSAKKWILSAASGRSRGSSSKSSSADVPKGHFAVYVG-EETRRFVVPISYLN 59

Query: 58 QPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQL 97
           PLFQELL R EEEFGF+   GGLTIPC    F  +   L
Sbjct: 60 HPLFQELLDRAEEEFGFDQ-DGGLTIPCDVVVFEHLLWML 98

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 98.7 bits (245), Expect = 2e-28
 Identities = 51/93 (54%), Positives = 67/93 (72%), Gaps = 5/93 (5%)

Query: 12  KQILR-QSVLNAEKGASTSLD-VPKGFLAVYVGV---TQMKRFLIPVSYLNQPLFQELLS 66
           KQIL+  S+ N  + +S+S D VPKG +AVYVG     + KRF++P+S+LN P F+E LS
Sbjct: 13  KQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLS 72

Query: 67  RVEEEFGFNHSMGGLTIPCREDTFTDITSQLIR 99
           R EEEFGFNH MGGLTIPCRE+ F D+ +  + 
Sbjct: 73  RAEEEFGFNHPMGGLTIPCREEVFLDLIASRLH 105

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 94.8 bits (235), Expect = 5e-27
 Identities = 49/88 (55%), Positives = 63/88 (71%), Gaps = 8/88 (9%)

Query: 11 AKQILRQSVLNAEKGAS-------TSLDVPKGFLAVYVG-VTQMKRFLIPVSYLNQPLFQ 62
          AKQI +   +  + G+S       TS  VPKG +AVYVG   + KRF++P+SYLN PLF+
Sbjct: 11 AKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFR 70

Query: 63 ELLSRVEEEFGFNHSMGGLTIPCREDTF 90
          E L+R EEE GF+HSMGGLTIPCRE++F
Sbjct: 71 EFLNRAEEECGFHHSMGGLTIPCREESF 98

Length = 108

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 88.3 bits (219), Expect = 2e-24
 Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 6/90 (6%)

Query: 12  KQIL-RQSVLNAEKG---ASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSR 67
           KQIL R S L  ++G       LDVPKG   VYVG  +  R+++P+S+L  P FQ LL +
Sbjct: 16  KQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENR-SRYIVPISFLTHPEFQSLLQQ 74

Query: 68  VEEEFGFNHSMGGLTIPCREDTFTDITSQL 97
            EEEFGF+H M GLTIPC E  F  +TS +
Sbjct: 75  AEEEFGFDHDM-GLTIPCEEVVFRSLTSMI 103

Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	86.33
PRK02899	197	adaptor protein; Provisional	84.65
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	83.06

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=3.8e-41  Score=233.19  Aligned_cols=95  Identities=46%  Similarity=0.825  Sum_probs=86.1

Q ss_pred             CCcc----cchhHHHHHHHhhhhhhhccCC----CCccCCCCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhh
Q 039906            1 MGIR----LPGFFLAKQILRQSVLNAEKGA----STSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEF   72 (100)
Q Consensus         1 m~~~----~~~i~~~k~~l~r~~~~~~~~~----~~~~~vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEf   72 (100)
                      |+|+    |..+.++|++|+||.|.+++++    ..+.+||+||||||||+++ +||+||++|||||+|++||++|||||
T Consensus         1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~-~RfvVp~~~L~hP~F~~LL~~aeeEf   79 (104)
T PLN03090          1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENR-SRYIVPISFLTHPEFQSLLQQAEEEF   79 (104)
T ss_pred             CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCCC-EEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence            5554    4457899999999999988643    3677899999999999987 99999999999999999999999999


Q ss_pred             CCccCCCceeeeCcHHHHHHHHHHh
Q 039906           73 GFNHSMGGLTIPCREDTFTDITSQL   97 (100)
Q Consensus        73 G~~~~~G~L~IPC~~~~Fe~vl~~l   97 (100)
                      ||+|+ |+|+|||+++.|++++|+|
T Consensus        80 Gf~~~-G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         80 GFDHD-MGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCCC-CcEEEeCCHHHHHHHHHHh
Confidence            99998 9999999999999999998

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=4.6e-40  Score=227.95  Aligned_cols=96  Identities=54%  Similarity=0.917  Sum_probs=84.4

Q ss_pred             CCcccchhHHH-HHHHhhhhhhhcc--CCCCccCCCCceEEEEecCc---ceeEEEEeccccCcHHHHHHHHhHHHhhCC
Q 039906            1 MGIRLPGFFLA-KQILRQSVLNAEK--GASTSLDVPKGFLAVYVGVT---QMKRFLIPVSYLNQPLFQELLSRVEEEFGF   74 (100)
Q Consensus         1 m~~~~~~i~~~-k~~l~r~~~~~~~--~~~~~~~vpkG~~aVyVG~e---~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~   74 (100)
                      ||++++.|... ||+|+|++...++  +++.+.+|||||||||||++   ..+|||||++|||||.|++||++|||||||
T Consensus         1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf   80 (105)
T PLN03220          1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF   80 (105)
T ss_pred             CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence            99999999955 9999999944332  24567899999999999983   239999999999999999999999999999


Q ss_pred             ccCCCceeeeCcHHHHHHHHHH
Q 039906           75 NHSMGGLTIPCREDTFTDITSQ   96 (100)
Q Consensus        75 ~~~~G~L~IPC~~~~Fe~vl~~   96 (100)
                      +|++|+|+|||+++.|+++++.
T Consensus        81 ~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         81 NHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             CCCCCCEEeeCCHHHHHHHHHh
Confidence            9866999999999999999864

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=3e-37  Score=211.52  Aligned_cols=96  Identities=47%  Similarity=0.763  Sum_probs=79.1

Q ss_pred             CCcccchhHHHHHHHhhhhhhhccC----CCCccCCCCceEEEEecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCcc
Q 039906            1 MGIRLPGFFLAKQILRQSVLNAEKG----ASTSLDVPKGFLAVYVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFNH   76 (100)
Q Consensus         1 m~~~~~~i~~~k~~l~r~~~~~~~~----~~~~~~vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~   76 (100)
                      |-.++.++...++..+++.......    ++...++|+||||||||+++ +||+||++|||||+|++||++|||||||++
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~~~-~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~   79 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGEER-RRFVVPVSYLNHPLFQELLEQAEEEFGFDQ   79 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCccc-eEEEechHHcCchhHHHHHHHHhhhcCcCC
Confidence            4455666666666555544433211    22348899999999999987 999999999999999999999999999999


Q ss_pred             CCCceeeeCcHHHHHHHHHHhh
Q 039906           77 SMGGLTIPCREDTFTDITSQLI   98 (100)
Q Consensus        77 ~~G~L~IPC~~~~Fe~vl~~l~   98 (100)
                      + |+|+|||+++.|++++|+|+
T Consensus        80 ~-G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   80 D-GPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             C-CcEEeeCCHHHHHHHHHHhC
Confidence            7 99999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=5.2e-35  Score=203.59  Aligned_cols=70  Identities=61%  Similarity=1.093  Sum_probs=64.2

Q ss_pred             CCccCCCCceEEEEecCc-ceeEEEEeccccCcHHHHHHHHhHHHhhCCccCCCceeeeCcHHHHHHHHHH
Q 039906           27 STSLDVPKGFLAVYVGVT-QMKRFLIPVSYLNQPLFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQ   96 (100)
Q Consensus        27 ~~~~~vpkG~~aVyVG~e-~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~   96 (100)
                      ..+.+|||||||||||++ ..+||+||++|||||+|++||++|||||||++++|+|+|||+++.|+++++.
T Consensus        34 ~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         34 TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence            355789999999999983 3499999999999999999999999999999866999999999999999985

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=86.33  E-value=0.98  Score=29.03  Aligned_cols=57  Identities=25%  Similarity=0.187  Sum_probs=41.3

Q ss_pred             EEecCcceeEEEEeccccC-cH--HHHHHHHhHHHhhCCccCCCceeeeCcHHHHHHHHHHhhc
Q 039906           39 VYVGVTQMKRFLIPVSYLN-QP--LFQELLSRVEEEFGFNHSMGGLTIPCREDTFTDITSQLIR   99 (100)
Q Consensus        39 VyVG~e~~~RfvVp~~yL~-hP--~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~   99 (100)
                      +=||.   ++|.++.+.|. +|  .|..+++.......-+ +.|.+-|-++...|++||.-+..
T Consensus         3 lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~-~~~~~fiDRdp~~F~~IL~ylr~   62 (94)
T PF02214_consen    3 LNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDDYDD-DDGEYFIDRDPELFEYILNYLRT   62 (94)
T ss_dssp             EEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEET-TTTEEEESS-HHHHHHHHHHHHH
T ss_pred             EEECC---EEEEEcHHHHhhCCCChhhhHHhhccccccCC-ccceEEeccChhhhhHHHHHHhh
Confidence            45676   78999998887 54  7888888653222222 34999999999999999988764

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=84.65  E-value=0.88  Score=34.32  Aligned_cols=24  Identities=25%  Similarity=0.760  Sum_probs=20.8

Q ss_pred             HHHHHHHHhHHHhhCCccCCCceee
Q 039906           59 PLFQELLSRVEEEFGFNHSMGGLTI   83 (100)
Q Consensus        59 P~F~~LL~~aeeEfG~~~~~G~L~I   83 (100)
                      -+|.++|++|..|+||..+ |||+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~~~-~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFEAD-GPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcccC-CeEEE
Confidence            4677779999999999986 99986

>smart00666 PB1 PB1 domain

Probab=83.06  E-value=6.3  Score=24.47  Aligned_cols=53  Identities=17%  Similarity=0.357  Sum_probs=38.3

Q ss_pred             EecCcceeEEEEeccccCcHHHHHHHHhHHHhhCCc----------cCCCceeeeCcHHHHHHHHHHhh
Q 039906           40 YVGVTQMKRFLIPVSYLNQPLFQELLSRVEEEFGFN----------HSMGGLTIPCREDTFTDITSQLI   98 (100)
Q Consensus        40 yVG~e~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~----------~~~G~L~IPC~~~~Fe~vl~~l~   98 (100)
                      +-|++. +||.||-    ...|.+|..+..+-|+..          .++..++|.|+ +++...+.+..
T Consensus         7 ~~~~~~-~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd-~Dl~~a~~~~~   69 (81)
T smart00666        7 RYGGET-RRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSD-EDLEEAIEEYD   69 (81)
T ss_pred             EECCEE-EEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCH-HHHHHHHHHHH
Confidence            336665 8999986    778999999999999874          12247888887 46666665543

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00