Citrus Sinensis ID: 039925
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 549 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGT6 | 1031 | LRR receptor-like serine/ | yes | no | 0.566 | 0.301 | 0.318 | 3e-36 | |
| C0LGP4 | 1010 | Probable LRR receptor-lik | no | no | 0.573 | 0.311 | 0.304 | 3e-35 | |
| Q9SD62 | 1025 | Putative receptor-like pr | no | no | 0.568 | 0.304 | 0.313 | 4e-34 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.555 | 0.277 | 0.300 | 4e-28 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.533 | 0.249 | 0.304 | 1e-26 | |
| O49318 | 1124 | Probable leucine-rich rep | no | no | 0.480 | 0.234 | 0.309 | 3e-26 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.551 | 0.310 | 0.290 | 8e-26 | |
| C0LGW6 | 966 | LRR receptor-like serine/ | no | no | 0.540 | 0.307 | 0.286 | 8e-26 | |
| Q9LVP0 | 1102 | Probable leucine-rich rep | no | no | 0.515 | 0.256 | 0.306 | 5e-25 | |
| Q9SSL9 | 1123 | Leucine-rich repeat recep | no | no | 0.526 | 0.257 | 0.302 | 7e-25 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 124/389 (31%), Positives = 189/389 (48%), Gaps = 78/389 (20%)
Query: 1 ETDHLALLAIKSLL--HDRRGVTSSWSNSIDLCQWRGVTCTHQHQRI----------NKC 48
ETD ALL KS + +++R V +SW++S C W GVTC + +R+
Sbjct: 29 ETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGV 88
Query: 49 LTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL- 107
++P +GN +LR +NL DN+F IP+KVGRLFRL+YL ++ N G+IP++LS+CS L
Sbjct: 89 ISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLS 148
Query: 108 -------------------LTKLFICE---THLSGQLLDFIGNPSAIQVMIFKENSLEGK 145
L+KL I + +L+G +GN +++Q + F N + G+
Sbjct: 149 TVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGE 208
Query: 146 FPNTLSNLRSLFYDNINRNEFSGLIPSFIFNI-SLKWNFLPENSFTGNLPLEIG------ 198
P+ ++ L + + I N FSG P ++NI SL+ L +NSF+GNL + G
Sbjct: 209 IPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNL 268
Query: 199 VTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLI----------- 247
L G N + + + L +++S+ + N +SG+I L KL
Sbjct: 269 RRLLLGTNQFTGAIPKTL--ANISSLER-FDISSNYLSGSIPLSFGKLRNLWWLGIRNNS 325
Query: 248 ----------FVNLYA-------LTMVKNKLSGPIPHHIASSLGNL-TLLTYLALDNNKL 289
F+ A L + N+L G +P IA NL T LT L L N +
Sbjct: 326 LGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIA----NLSTTLTSLFLGQNLI 381
Query: 290 QGNLPSSLGYYQNLMELSVSRNKLSASLP 318
G +P +G +L ELS+ N LS LP
Sbjct: 382 SGTIPHDIGNLVSLQELSLETNMLSGELP 410
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 124/407 (30%), Positives = 194/407 (47%), Gaps = 92/407 (22%)
Query: 1 ETDHLALLAIKSLL-HDRRGVTSSWSNSIDLCQWRGVTCTHQHQRINK----------CL 49
ETD ALL KS + D+R V SSW++S LC W+GVTC +++R+ +
Sbjct: 23 ETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVI 82
Query: 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL-- 107
+P +GN +L ++L +N F G IP++VG+L RLEYL + N+ G IP L +CS L
Sbjct: 83 SPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLN 142
Query: 108 ---------------------LTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKF 146
L +L + ++ G+L +GN + ++ + N+LEG+
Sbjct: 143 LRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEI 202
Query: 147 PNTLSNLRSLFYDNINRNEFSGLIPSFIFNI-SLKWNFLPENSFTGNLPLEIGVTLPK-- 203
P+ ++ L ++ + N FSG+ P ++N+ SLK + N F+G L ++G+ LP
Sbjct: 203 PSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLL 262
Query: 204 ----GRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTI-TLGIK---KLIFVN----- 250
G NY+ + L S++ST + M N ++G+I T G KL+F++
Sbjct: 263 SFNMGGNYFTGSIPTTL--SNISTLER-LGMNENNLTGSIPTFGNVPNLKLLFLHTNSLG 319
Query: 251 ------------------LYALTMVKNKLSGPIPHHIAS--------------------- 271
L L + +N+L G +P IA+
Sbjct: 320 SDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPY 379
Query: 272 SLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLP 318
+GNL L L LD N L G LP+SLG NL LS+ N+LS +P
Sbjct: 380 DIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIP 426
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 185/389 (47%), Gaps = 77/389 (19%)
Query: 1 ETDHLALLAIKSLLHD-RRGVTSSWSNSIDLCQWRGVTCTHQHQRINKC----------L 49
ETD ALL KS + + R V SW++S+ LC W GV C +H+R+ +
Sbjct: 38 ETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVV 97
Query: 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHC----- 104
+P VGN +LR +NL DN F G IP +VG LFRL+YL ++NN F G IP LS+C
Sbjct: 98 SPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLST 157
Query: 105 ----SNLLTKLFICE--------------THLSGQLLDFIGNPSAIQVMIFKENSLEGKF 146
SN L + E +L+G+ +GN +++Q++ F N +EG+
Sbjct: 158 LDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEI 217
Query: 147 PNTLSNLRSLFYDNINRNEFSGLIPSFIFNI-SLKWNFLPENSFTGNLPLEIGVTLPKGR 205
P ++ L+ + + I N+F+G+ P I+N+ SL + + NSF+G L + G LP
Sbjct: 218 PGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLP--- 274
Query: 206 NYYILLLAQKLYWSDVSTTATIIA------MGGNQISGTITLGIKK-------------- 245
N IL + + + T + I+ + N ++G I L +
Sbjct: 275 NLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSL 334
Query: 246 -------LIFV-------NLYALTMVKNKLSGPIPHHIASSLGNL-TLLTYLALDNNKLQ 290
L F+ L L + NKL G +P IA NL T LT L+L N +
Sbjct: 335 GNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIA----NLSTQLTELSLGGNLIS 390
Query: 291 GNLPSSLGYYQNLMELSVSRNKLSASLPP 319
G++P +G +L L + N L+ LPP
Sbjct: 391 GSIPHGIGNLVSLQTLDLGENLLTGKLPP 419
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 164/379 (43%), Gaps = 74/379 (19%)
Query: 6 ALLAIKSLLHDRRGVTSSWSNSIDL--CQWRGVTCTH---------QHQRINKCLTPHVG 54
LL K+ L+D G +SW N +D C W G+ CTH ++ L+P +
Sbjct: 30 VLLEFKAFLNDSNGYLASW-NQLDSNPCNWTGIACTHLRTVTSVDLNGMNLSGTLSPLIC 88
Query: 55 NFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFIC 114
LR +N+ N G IP+ + LE L L N F G IP L+ L KL++C
Sbjct: 89 KLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITL-KKLYLC 147
Query: 115 ETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFI 174
E +L G + IGN S++Q ++ N+L G P +++ LR L RN FSG+IPS I
Sbjct: 148 ENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEI 207
Query: 175 FNI-SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTA------TI 227
SLK L EN G+LP + L K +N L+L Q ++ + +
Sbjct: 208 SGCESLKVLGLAENLLEGSLPKQ----LEKLQNLTDLILWQNRLSGEIPPSVGNISRLEV 263
Query: 228 IAMGGNQISGTITLGIKKLI---------------------------------------- 247
+A+ N +G+I I KL
Sbjct: 264 LALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFI 323
Query: 248 ------FVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQ 301
+NL L + +N L GPIP LG LTLL L L N+L G +P L +
Sbjct: 324 PKEFGHILNLKLLHLFENILLGPIPRE----LGELTLLEKLDLSINRLNGTIPQELQFLP 379
Query: 302 NLMELSVSRNKLSASLPPL 320
L++L + N+L +PPL
Sbjct: 380 YLVDLQLFDNQLEGKIPPL 398
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 156/322 (48%), Gaps = 29/322 (9%)
Query: 15 HDRRGVTSSWS--NSIDLCQWRGVTCTHQ---------HQRINKCLTPHVGNFGYLRFIN 63
+D GV S W+ S+ C W G+TC +++ L+P + N YL+ ++
Sbjct: 43 NDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVLSPAIANLTYLQVLD 102
Query: 64 LVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLL 123
L N+F G+IP ++G+L L L+L N+FSG IP+ + N+ L + LSG +
Sbjct: 103 LTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIF-YLDLRNNLLSGDVP 161
Query: 124 DFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNF 183
+ I S++ ++ F N+L GK P L +L L N +G IP I ++ +
Sbjct: 162 EEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDL 221
Query: 184 -LPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVS------TTATIIAMGGNQIS 236
L N TG +P + G L N L+L + L D+ ++ + + NQ++
Sbjct: 222 DLSGNQLTGKIPRDFGNLL----NLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLT 277
Query: 237 GTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSS 296
G I + L V L AL + KNKL+ IP SSL LT LT+L L N L G +
Sbjct: 278 GKIPAELGNL--VQLQALRIYKNKLTSSIP----SSLFRLTQLTHLGLSENHLVGPISEE 331
Query: 297 LGYYQNLMELSVSRNKLSASLP 318
+G+ ++L L++ N + P
Sbjct: 332 IGFLESLEVLTLHSNNFTGEFP 353
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 143/313 (45%), Gaps = 49/313 (15%)
Query: 26 NSID--LCQWRGVTCTH-----------------QHQRINKCLTPHVGNFGYLRFINLVD 66
N ID C W GV C+ ++ ++P +G L ++NL
Sbjct: 59 NGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSPSIGGLVNLVYLNLAY 118
Query: 67 NNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFI 126
N G+IP ++G +LE + L NN F G IP ++ S L + IC LSG L + I
Sbjct: 119 NALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRS-FNICNNKLSGPLPEEI 177
Query: 127 GNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFN-ISLKWNFLP 185
G+ ++ ++ N+L G P +L NL L +N+FSG IP+ I ++LK L
Sbjct: 178 GDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLA 237
Query: 186 ENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKK 245
+N +G LP EIG+ ++ L + + W N+ SG I I
Sbjct: 238 QNFISGELPKEIGM---------LVKLQEVILWQ-------------NKFSGFIPKDIGN 275
Query: 246 LIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLME 305
L +L L + N L GPIP S +GN+ L L L N+L G +P LG +ME
Sbjct: 276 L--TSLETLALYGNSLVGPIP----SEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVME 329
Query: 306 LSVSRNKLSASLP 318
+ S N LS +P
Sbjct: 330 IDFSENLLSGEIP 342
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (297), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 164/372 (44%), Gaps = 69/372 (18%)
Query: 6 ALLAIKSLLHDRRGVTSSW--SNSIDLCQWRGVTCTH----------QHQRINKCLTPHV 53
LL IK D V W S S D C WRGV+C + ++ ++P +
Sbjct: 29 TLLEIKKSFKDVNNVLYDWTTSPSSDYCVWRGVSCENVTFNVVALNLSDLNLDGEISPAI 88
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVG------------------------RLFRLEYLLLA 89
G+ L I+L N G+IP+++G +L +LE L+L
Sbjct: 89 GDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILK 148
Query: 90 NNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNT 149
NN G IP+ LS N L L + + LSG++ I +Q + + N+L G
Sbjct: 149 NNQLIGPIPSTLSQIPN-LKILDLAQNKLSGEIPRLIYWNEVLQYLGLRGNNLVGNISPD 207
Query: 150 LSNLRSLFYDNINRNEFSGLIPSFIFN-ISLKWNFLPENSFTGNLPLEIG----VTLP-- 202
L L L+Y ++ N +G IP I N + + L N TG +P +IG TL
Sbjct: 208 LCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFLQVATLSLQ 267
Query: 203 ----KGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVK 258
G+ ++ L Q L ++ + GN +SG+I + L F L +
Sbjct: 268 GNQLSGKIPSVIGLMQAL---------AVLDLSGNLLSGSIPPILGNLTFTE--KLYLHS 316
Query: 259 NKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLP 318
NKL+G IP LGN++ L YL L++N L G++P LG +L +L+V+ N L +P
Sbjct: 317 NKLTGSIP----PELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIP 372
Query: 319 PLNSQHNHSFSC 330
+H SC
Sbjct: 373 ------DHLSSC 378
|
Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (297), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 163/360 (45%), Gaps = 63/360 (17%)
Query: 6 ALLAIKSLLHDRRGVTSSWSN--SIDLCQWRGVTCTHQHQRINKC----------LTPHV 53
AL+AIK + + W + + DLC WRGV C + + ++P +
Sbjct: 32 ALMAIKGSFSNLVNMLLDWDDVHNSDLCSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAI 91
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVG------------------------RLFRLEYLLLA 89
G+ L+ I+L N G+IP+++G +L +LE L L
Sbjct: 92 GDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLK 151
Query: 90 NNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNT 149
NN +G +PA L+ NL +L + HL+G++ + +Q + + N L G +
Sbjct: 152 NNQLTGPVPATLTQIPNL-KRLDLAGNHLTGEISRLLYWNEVLQYLGLRGNMLTGTLSSD 210
Query: 150 LSNLRSLFYDNINRNEFSGLIPSFIFN-ISLKWNFLPENSFTGNLPLEIG----VTLP-- 202
+ L L+Y ++ N +G IP I N S + + N TG +P IG TL
Sbjct: 211 MCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDISYNQITGEIPYNIGFLQVATLSLQ 270
Query: 203 ----KGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVK 258
GR ++ L Q L D+S N++ G I + L F L +
Sbjct: 271 GNRLTGRIPEVIGLMQALAVLDLSD---------NELVGPIPPILGNLSFTG--KLYLHG 319
Query: 259 NKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLP 318
N L+GPIP S LGN++ L+YL L++NKL G +P LG + L EL+++ N+L +P
Sbjct: 320 NMLTGPIP----SELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIP 375
|
Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 149/326 (45%), Gaps = 43/326 (13%)
Query: 7 LLAIKSLLHDRRGVTSSW-SNSIDLCQWRGVTCTHQHQR------------INKCLTPHV 53
LL IKS D + +W SN C W GV C++ ++ L+P +
Sbjct: 34 LLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSI 93
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
G +L+ ++L N G+IP+++G LE L L NN F G+IP + + L L I
Sbjct: 94 GGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVS-LENLII 152
Query: 114 CETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSF 173
+SG L IGN ++ ++ N++ G+ P ++ NL+ L +N SG +PS
Sbjct: 153 YNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSE 212
Query: 174 IFNI-SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGG 232
I SL L +N +G LP EIG+ L K L+Q + W
Sbjct: 213 IGGCESLVMLGLAQNQLSGELPKEIGM-LKK--------LSQVILWE------------- 250
Query: 233 NQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGN 292
N+ SG I I +L L + KN+L GPIP LG+L L +L L N L G
Sbjct: 251 NEFSGFIPREISNC--TSLETLALYKNQLVGPIPKE----LGDLQSLEFLYLYRNGLNGT 304
Query: 293 LPSSLGYYQNLMELSVSRNKLSASLP 318
+P +G +E+ S N L+ +P
Sbjct: 305 IPREIGNLSYAIEIDFSENALTGEIP 330
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 160/341 (46%), Gaps = 52/341 (15%)
Query: 20 VTSSW---SNSIDLCQWRGVTCTHQ---------HQRINKCLTPHVGNFGYLRFINLVDN 67
VTS+W ++ C W G+TC R++ L P +G L+ ++L N
Sbjct: 50 VTSTWKINASEATPCNWFGITCDDSKNVASLNFTRSRVSGQLGPEIGELKSLQILDLSTN 109
Query: 68 NFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIG 127
NF G IP +G +L L L+ N FS KIP L L L++ L+G+L + +
Sbjct: 110 NFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEV-LYLYINFLTGELPESLF 168
Query: 128 NPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFN-ISLKWNFLPE 186
+QV+ N+L G P ++ + + L ++ N+FSG IP I N SL+ +L
Sbjct: 169 RIPKLQVLYLDYNNLTGPIPQSIGDAKELVELSMYANQFSGNIPESIGNSSSLQILYLHR 228
Query: 187 NSFTGNLP------------------LEIGVTL--PKGRNYYILLLAQKLYWSDV----- 221
N G+LP L+ V P +N L L+ + V
Sbjct: 229 NKLVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGSPNCKNLLTLDLSYNEFEGGVPPALG 288
Query: 222 --STTATIIAMGGNQISGTI--TLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLT 277
S+ ++ + GN +SGTI +LG+ K NL L + +N+LSG IP + LGN +
Sbjct: 289 NCSSLDALVIVSGN-LSGTIPSSLGMLK----NLTILNLSENRLSGSIP----AELGNCS 339
Query: 278 LLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLP 318
L L L++N+L G +PS+LG + L L + N+ S +P
Sbjct: 340 SLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIP 380
|
Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 549 | ||||||
| 255576770 | 851 | serine-threonine protein kinase, plant-t | 0.890 | 0.574 | 0.270 | 2e-49 | |
| 297736631 | 978 | unnamed protein product [Vitis vinifera] | 0.908 | 0.510 | 0.298 | 5e-46 | |
| 242043336 | 713 | hypothetical protein SORBIDRAFT_02g00628 | 0.919 | 0.708 | 0.273 | 6e-46 | |
| 218199011 | 812 | hypothetical protein OsI_24717 [Oryza sa | 0.868 | 0.587 | 0.281 | 1e-44 | |
| 224113119 | 1065 | predicted protein [Populus trichocarpa] | 0.573 | 0.295 | 0.326 | 3e-44 | |
| 255571869 | 721 | serine-threonine protein kinase, plant-t | 0.575 | 0.438 | 0.346 | 6e-44 | |
| 359482058 | 1040 | PREDICTED: probable LRR receptor-like se | 0.575 | 0.303 | 0.354 | 7e-44 | |
| 147853780 | 1904 | hypothetical protein VITISV_030954 [Viti | 0.575 | 0.165 | 0.354 | 9e-44 | |
| 297831962 | 968 | predicted protein [Arabidopsis lyrata su | 0.566 | 0.321 | 0.333 | 1e-42 | |
| 255571732 | 923 | serine-threonine protein kinase, plant-t | 0.867 | 0.515 | 0.254 | 1e-42 |
| >gi|255576770|ref|XP_002529272.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223531261|gb|EEF33104.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 180/666 (27%), Positives = 295/666 (44%), Gaps = 177/666 (26%)
Query: 1 ETDHLALLAIKS-LLHDRRGVTSSWSNSIDLCQWRGVTCTHQHQRIN----------KCL 49
+TDHL+LL K+ + HD + SW++S+ C W GV C+ +H+R+ L
Sbjct: 38 KTDHLSLLDFKAKIRHDPQYSLKSWNDSVHFCNWDGVICSSKHRRVTVLDLQSKGLVGSL 97
Query: 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL-- 107
+PHVGN +LR + L +N +GEIP+++G LFRL+ L L NN F G+IP+NLSHCSNL
Sbjct: 98 SPHVGNLSFLRQLILQNNTLQGEIPQEIGHLFRLQVLRLENNSFEGEIPSNLSHCSNLFF 157
Query: 108 ---------------------LTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKF 146
L +L I + SG + +GN S+++V N L+G
Sbjct: 158 LRLGYNKLVGKIPVELSTLSNLIRLSIIGNYFSGGIPPSLGNLSSLEVFAADGNLLDGTI 217
Query: 147 PNTLSNLRSLFYDNINRNEFSGLIPSFIFNI-SLKWNFLPENSFTGNLPLEIGVTLPKGR 205
P + L+ L Y ++ N+ SG P+ I+N+ S+ + + +N G++P IG+ LP
Sbjct: 218 PESFGKLKYLAYIGLHGNKLSGTFPASIYNLSSIIFLLVSDNLLHGSIPSNIGLQLPH-- 275
Query: 206 NYYILLLAQKLYWSDV-----------STTATIIAMGGNQISGTITL----GIKKLIFVN 250
L + W + ++ + +G N +G + G++ L +
Sbjct: 276 ------LQELEMWGNHFSGSIPVSLSNASELVYVDLGTNNFTGKVLSAHFGGLRHLSHLA 329
Query: 251 LYA-------------------------LTMVKNKLSGPIPHHIA--------------- 270
LY L + N+L G P+ +A
Sbjct: 330 LYQNSLGSNKDDDLDFITSLLNSTSFVFLDLSTNQLEGAFPNSVANLSSPLQWLSLGQNR 389
Query: 271 ------SSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPLNSQH 324
S L L L+ L++ N++ G++PS +G QNL + N+L+ +P +S
Sbjct: 390 IHGRLPSWLSGLVSLSRLSIQFNQITGSIPSDMGKLQNLYSMFFDHNRLTGIIP--SSIG 447
Query: 325 NHSF-------------SCPGFEFSVIKLEFQIPGNKKLCGGL-DELHLLS----CHSKE 366
N SF + P + +L F L G + D+L L C +
Sbjct: 448 NLSFLNLLHLNDNNLHGTIPSSLGNCHELVFIDLSQNNLNGSISDQLFALPTFFYCWFQH 507
Query: 367 SKRQTIKLLTMAISMILSLFILSPSTVTNEFSSSNMIGQGSFGSVYKGILGEKWTA---- 422
K + + T+ + + + S TN FS+ ++IG GSFGSVYK IL E A
Sbjct: 508 PKTEVVS-DTLVLKSLEEVSYKSILKATNGFSAESLIGAGSFGSVYKVILDEDGPALAIK 566
Query: 423 -------GYSE-------------------------GTDFKGIDFKAVVFDYMQNRSLED 450
G S+ DF+G DFKA+V++YM N +LE+
Sbjct: 567 VLNLQHRGASKSFMAECEALKSIRHRNLVKIITSCTSIDFQGNDFKALVYEYMPNGNLEN 626
Query: 451 W----------PYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLRVKMALPEKVMEIVESS 500
W P+++N SLS+++++ ID+ +A++YL + P ++ S+
Sbjct: 627 WLHLGSGIGVAPFETN------SLSLLQRIDIAIDIGNALDYLHHQCERPIIHCDLKPSN 680
Query: 501 LLLEIE 506
+LL+I+
Sbjct: 681 VLLDID 686
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736631|emb|CBI25502.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 193/646 (29%), Positives = 303/646 (46%), Gaps = 147/646 (22%)
Query: 1 ETDHLALLAIKSLLHD-RRGVTSSWSNSIDLCQWRGVTCTHQHQRI------NKCLT--- 50
ETD LALL K+ L D GV SSW++S+ CQW+GVTC+ +HQR+ + L
Sbjct: 40 ETDKLALLVFKNHLADVPNGVLSSWNDSLHFCQWQGVTCSRRHQRVTVLRLEGQSLAGSL 99
Query: 51 PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110
P +GN +LR + L +NN +G IP +G L RL++L L+ N G+IP L++CSNL+T
Sbjct: 100 PPIGNLTFLRELVLSNNNLQGSIPTDIGLLRRLQHLNLSTNSLQGEIPVELTNCSNLIT- 158
Query: 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENS---LEGKFPNTLSNLRS----LFYDN--- 160
+ + +L+GQ+ G+ S + ++ NS L G P++L NL S +F N
Sbjct: 159 VDLTRNNLTGQIPFPFGHMSKLLILRLGRNSVNNLSGMIPSSLYNLSSAIELVFTANRLS 218
Query: 161 ------------------INRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIG--- 198
I +N+F G+IP + NIS L+ + EN TG +P +IG
Sbjct: 219 GNFMSSMRFSLPQLLRFAIAQNQFIGIIPDILSNISGLELLDVGENYLTGQVP-DIGNLI 277
Query: 199 --VTLPKGRNYYILLLAQ-----------KLYWSDVST---------TATIIAMGGNQIS 236
T +N + ++ +L W+ +S + + + N ++
Sbjct: 278 NLTTFGVAQNDFTGVIPTSIGKLQNLRQLELSWNRLSGLLPSSLGNLSQLSLYLQQNLLT 337
Query: 237 GTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSS 296
G+ + +L NL L + NKLSG IP LGN +L YL + N GN+P S
Sbjct: 338 GSFPAEVGEL--KNLNELLVSDNKLSGEIPME----LGNCLVLEYLDMARNSFLGNIPLS 391
Query: 297 LGYYQNLMELSVSRNKLSASLPPLNSQHNHSFSCPGFEFSVIKLEFQIP----------- 345
G+ + + L +SRN LS ++P + H + S LE ++P
Sbjct: 392 FGFLRGIRFLDLSRNNLSGTIP---KELEHLSALLSLNLSYNYLEGEVPSGGVFKNVSGI 448
Query: 346 ---GNKKLCGGLDELHLLSCH--------SKESKRQTIKLLTM---------AISMILSL 385
GNKKLCGG+ +L L +C S++ +K+L + +++
Sbjct: 449 SITGNKKLCGGIRQLQLPACSDIDGFRILSQDKTPVAVKVLNLQQRGAAKSFVAECMITG 508
Query: 386 FILSPSTVTNEFSSSNMIGQGSFGSVYK--GILGEKWTAG--YSEGTDFKGIDFKAVVFD 441
I++P ++ + S+S ++ GS G V GI G G YS G ++
Sbjct: 509 CIMNPEILSGDQSNSGLM-MGSIGYVAPEYGIGGLVSPQGDVYSYGI--------LLLEM 559
Query: 442 YMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLRVKMALPEKVMEIVESSL 501
+ R ED ++ L +LS KMA PE+VMEIV+S+L
Sbjct: 560 FTGKRPTED---MFSDGLSLHNLS--------------------KMAFPERVMEIVDSNL 596
Query: 502 LLEIED-----CLVSVLTIGILCSVESPSERMEKPYIVSKLSHARE 542
+ E+++ CLVS IG+ CS ES S+RM+ +V +L+ +E
Sbjct: 597 VGELDEDRMYHCLVSFARIGVACSEESASDRMDIKDVVIELNIIKE 642
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242043336|ref|XP_002459539.1| hypothetical protein SORBIDRAFT_02g006280 [Sorghum bicolor] gi|241922916|gb|EER96060.1| hypothetical protein SORBIDRAFT_02g006280 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 182/665 (27%), Positives = 290/665 (43%), Gaps = 160/665 (24%)
Query: 3 DHLALLAIKSLLHDRRGVTSSWSNSIDLCQWRGVTCTHQH-----------QRINKCLTP 51
D AL+A K+ + G +SW+ S C W GVTC +H Q + ++
Sbjct: 78 DETALVAFKAKISGDSGALASWNQSTSYCSWEGVTCGRRHRWRVVALNLTSQGLTGTISA 137
Query: 52 HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK- 110
+GN +LR ++L N+ +GEIP +G L RL+ L L N +G IP+N+S C +L +
Sbjct: 138 AIGNLTFLRLLDLSYNSLQGEIPGSIGSLRRLQRLHLRENMLTGVIPSNISRCISLRNRF 197
Query: 111 -----------------LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNL 153
L I ++SG + IGN + ++++ F +N G P ++ L
Sbjct: 198 AGKLPDSLANLSTNLQWLQIQNNNISGVMPSDIGNLAGLEMLAFGKNFFTGVIPKSIGKL 257
Query: 154 RSLFYDNINRNEFSGLIPSFIFNI-SLKWNFLPENSFTGNLPLEIG-----VTLPKGRNY 207
L + + N SG +PS I N+ SL +L NSF G +P IG + L N
Sbjct: 258 TRLQHLGLISNYLSGHLPSSIGNLSSLLQLYLANNSFEGPIPPSIGNLSKLLALDLSNNK 317
Query: 208 YILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPH 267
L+ ++ ++ + + + + N + G + L + L V+L L + NKLSG IP
Sbjct: 318 LTGLIPNEIL--ELPSISRFLDLSNNMLEGLVPLEVGSL--VHLGQLNLSGNKLSGEIPD 373
Query: 268 --------------------HIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELS 307
I ++L N+ LT L L +NKL G++PS L NL EL
Sbjct: 374 TFGNCRVMEILLMDGNSFQGSIPATLKNMAGLTVLDLTDNKLDGSIPSDLATLTNLQELY 433
Query: 308 VSRNKLSASLPPLNSQHNHSFSCPGFEFSVIKLEFQIP--------------GNKKLCGG 353
++ N LS +P L +S S + S L+ +IP GN LCGG
Sbjct: 434 LAHNNLSGPIPEL---LGNSTSLLRLDLSYNNLQGEIPKEGVFKNLTGLSIVGNNALCGG 490
Query: 354 LDELHLLSC---HSKESKRQTIKLLTMAISMILSLFIL----------SPSTV------- 393
+ +LHL C ++++S++ K L +AI SL +L TV
Sbjct: 491 IPQLHLQKCPSSYARKSRKGVPKFLRIAIPTGGSLILLFLVWAGYHHRKSKTVPKKDLLP 550
Query: 394 ------------------TNEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGTDFKGIDF 435
T+ FS +N++G+G +G+VYKG L + + I
Sbjct: 551 QFAEIELPIFPYNDILNGTDGFSEANVLGKGRYGTVYKGTL------------ENQAIVV 598
Query: 436 KAVVFDYMQNRSLE----DWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLRVKMALPE 491
VF+ Q+ S + +W +N+ + D S Y K ALP
Sbjct: 599 AVKVFNVQQSGSYKSFQAEWKSPTNDMFR--------------DGMSLHYY--AKAALPH 642
Query: 492 KVMEIVESSLLL--------------EIEDCLVSVLTIGILCSVESPSERMEKPYIVSKL 537
KVMEI +S++ L I +CL +V+ +G+LCS + P+ER+ +++
Sbjct: 643 KVMEIADSNIWLHDGVNNSNDTRHITRIRECLSAVIQLGVLCSKQLPTERLSTNDAAAEM 702
Query: 538 SHARE 542
R+
Sbjct: 703 YAIRD 707
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218199011|gb|EEC81438.1| hypothetical protein OsI_24717 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 179/636 (28%), Positives = 280/636 (44%), Gaps = 159/636 (25%)
Query: 2 TDHLALLAIK-SLLHDRRGVTSSWSNSIDLCQWRGVTCTHQHQRI------NKCLTPHV- 53
TD +LL K ++ +D G SSW+ + LC+W+GVTC + R+ + LT +
Sbjct: 37 TDLASLLDFKRAITNDPFGAMSSWNTNTHLCRWKGVTCDQRAHRVVALDLVGQTLTGQIS 96
Query: 54 ---GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110
GN YL ++L DN G +P ++G L +L +L L+ N G IP L +C+ L T
Sbjct: 97 HSLGNMSYLTSLSLPDNLLSGRVPPQLGNLRKLVFLDLSGNSLQGIIPEALINCTRLRT- 155
Query: 111 LFICETHLSGQLL------------------------DFIGNPSAIQVMIFKENSLEGKF 146
L + HL G + IGN +++ +I + N LEG
Sbjct: 156 LDVSRNHLVGDITPNIALLSNLRNMRLHSNNLTGIIPPEIGNITSLNTVILQGNMLEGSI 215
Query: 147 PNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGR 205
P L L ++ Y + N SG IP +FN+S ++ LP N G LP ++G +P +
Sbjct: 216 PEELGKLSNMSYLLLGGNRLSGRIPEVLFNLSHIQEIALPLNMLHGPLPSDLGNFIPNLQ 275
Query: 206 NYYILLLAQKLYWSDVSTTATIIAMG-------------------------GNQISGTI- 239
Y+ K +V T TI+ G N ++G I
Sbjct: 276 QLYLGGNIPK----EVFTVPTIVQCGLSHNNLQGLIPSLSSLQQLSYLDLSSNNLTGEIP 331
Query: 240 -TLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLG 298
TLG + L + M +N LSG IP +SLGNL++LT L +N L G++P +L
Sbjct: 332 PTLGTCQ----QLETINMGQNFLSGSIP----TSLGNLSILTLFNLSHNNLTGSIPIALS 383
Query: 299 YYQNLMELSVSRNKLSASLPPLNSQHNHSFSCPGFEFSVIKLEFQIPGNKKLCGGLDELH 358
Q L +L +S N L +P N + I LE GN++LCGG+ ELH
Sbjct: 384 KLQFLTQLDLSDNHLEGQVPTDGVFRNA---------TAISLE----GNRQLCGGVLELH 430
Query: 359 LLSC----HSKESKRQ-TIKLLTMAISMILSLFI----------------LSPST----- 392
+ SC SK +R +K+L + ++ +F+ L PS+
Sbjct: 431 MPSCPTVYKSKTGRRHFLVKVLVPTLGILCLIFLAYLAIFRKKMFRKQLPLLPSSDQFAI 490
Query: 393 --------VTNEFSSSNMIGQGSFGSVYKGILGEK-------------WTAGYSEGTDFK 431
T F+ SN+IG+GS+GSVYKG L ++ A S T+ K
Sbjct: 491 VSFKDLAQATENFAESNLIGRGSYGSVYKGTLTQENMVVAVKVFHLDMQGADRSFMTECK 550
Query: 432 -----------------------GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIR 468
G DFKA+V+ +M N +L+ W + ++ + LS+ +
Sbjct: 551 ALRSIRHRNLLPVLTSCSTIDNVGNDFKALVYKFMPNGNLDTWLHPASGTNASNQLSLSQ 610
Query: 469 KLSTTIDVASAIEYLRVKMALPEKVMEIVESSLLLE 504
++ +D+A A++YL P ++ S++LL+
Sbjct: 611 RIKIAVDIADALQYLHHDCENPIIHCDLKPSNVLLD 646
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113119|ref|XP_002316397.1| predicted protein [Populus trichocarpa] gi|222865437|gb|EEF02568.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 140/429 (32%), Positives = 199/429 (46%), Gaps = 114/429 (26%)
Query: 1 ETDHLALLAIK-SLLHDRRGVTSSWSNSIDLCQWRGVTCTHQHQRI-----NKC-----L 49
ETD +LLA+K + D G SSW+ S C+W GVTC +HQR+ C L
Sbjct: 32 ETDIFSLLALKHQITDDPLGKLSSWNESTHFCEWSGVTCGKKHQRVVQLDLQSCKLSGSL 91
Query: 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109
+PHVGN +LR +NL +N+F IP+++G LFRL+ L+L NN FSG+IPAN+S CSNLL+
Sbjct: 92 SPHVGNMSFLRTLNLENNSFGQNIPQELGSLFRLQALVLTNNSFSGEIPANISRCSNLLS 151
Query: 110 -----------------------KLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKF 146
+ +L G++ GN S I+ + +N+L+G
Sbjct: 152 LELEGNNLTGKLPAEFGSLSKLKAFYFPRNNLFGEIPPAYGNLSHIEEIQGGQNNLQGDI 211
Query: 147 PNTLSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNF-LPENSFTGNLPLEIGVTLPKGR 205
P ++ L+ L + + N SG IP+ I+N+S +F +P N G+LP ++G+TLP
Sbjct: 212 PKSIGKLKRLKHFSFGTNNLSGTIPTSIYNLSSLTHFSVPANQLHGSLPRDLGLTLPNLE 271
Query: 206 ---------------------NYYILLLAQKLYWSDVSTTATI----------------- 227
N +L L + V T A +
Sbjct: 272 IFRIHTCQFSGLIPVTISNVSNLSLLDLGLNSFTGQVPTLAGLHNLRLLALDFNDLGNGG 331
Query: 228 ---------------IAMGGNQISGTITLGIKKLI----------------------FVN 250
+ G NQISG+I I LI N
Sbjct: 332 ALPEIVSNFSSKLRFMTFGNNQISGSIPNEIGNLISLRGFGFESNKLTGIIPTSIGKLQN 391
Query: 251 LYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSR 310
L AL + NK++G IP SSLGN T L L LD N LQG++PSSLG ++L+ L +S+
Sbjct: 392 LGALALSGNKIAGNIP----SSLGNSTALVLLYLDKNNLQGSIPSSLGNCRDLLSLDLSQ 447
Query: 311 NKLSASLPP 319
N S +PP
Sbjct: 448 NNFSGPIPP 456
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571869|ref|XP_002526877.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533776|gb|EEF35508.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 124/358 (34%), Positives = 182/358 (50%), Gaps = 42/358 (11%)
Query: 1 ETDHLALLAIKS-LLHDRRGVTSSWSNSIDLCQWRGVTCTHQHQRINK----------CL 49
+TD LALL K+ ++HD G+ SW++S++ C+WRGVTC H+H+R++ +
Sbjct: 17 DTDRLALLEFKAKIVHDPHGIFDSWNDSVNFCEWRGVTCGHKHRRVSSLNLRGLSLLGSI 76
Query: 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL-- 107
+P++ N +LRF+N +N F GEIP+++G LFRL +L L NN F G+IP N+S+CS L
Sbjct: 77 SPYIRNLTFLRFLNFANNRFHGEIPQEIGHLFRLRHLNLRNNSFGGEIPGNISYCSKLRI 136
Query: 108 ---------------------LTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKF 146
L LF+ +L+G++ IGN S+++ N LEG
Sbjct: 137 INFEANSLVGEIPDQLGSLKKLVTLFLGVNNLTGRIPLSIGNLSSLKKFSAPFNKLEGDV 196
Query: 147 PNTLSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNF-LPENSFTGNLPLEIGVTLPKGR 205
PN L L+SL + I N +G IP+ ++NIS F P N G+LP IG TLP +
Sbjct: 197 PNELGLLKSLRFFGIGANYLTGTIPATLYNISSIIAFSAPANQLNGSLPANIGNTLPNLQ 256
Query: 206 NYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVK---NKLS 262
+ I A + + S + + ISG I G + NL AL + N L
Sbjct: 257 RFGI--GANQFHGSIPISFTNASQLKRLDISGNIFTGGVPINLGNLQALQWLNLEFNLLG 314
Query: 263 GPIPHHIA--SSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLP 318
++ SL N + L L D N G LPS +G NL EL + N +S +P
Sbjct: 315 RNTSKDLSFIKSLSNCSNLVVLYFDANNFGGQLPSFIGNLSNLQELGIGSNHISGEIP 372
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 197/387 (50%), Gaps = 71/387 (18%)
Query: 1 ETDHLALLAIKS-LLHDRRGVTSSWSNSIDLCQWRGVTCTHQHQRINK----------CL 49
ETD LALLAIK+ + D G+T+SW++S+ C W GVTC H+HQR+N L
Sbjct: 38 ETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLNSLHLVGSL 97
Query: 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL-- 107
+P +GN +L +NL NNF G+IP+++GRL RL L L NN FSG+IPANLS CSNL
Sbjct: 98 SPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLVY 157
Query: 108 ---------------------LTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKF 146
+ ++ + +L+G + D +GN ++I+ + F N LEG
Sbjct: 158 FRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGSI 217
Query: 147 PNTLSNLRSLFYDNINRNEFSGLIPSFIFNI-SLKWNFLPENSFTGNLPLEIGVTLPK-- 203
P L L++L + + N FSG+IPS ++N+ SL+ LP N G+LP ++ TLP
Sbjct: 218 PQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQ 277
Query: 204 ----GRNYYILLL------AQKLYWSDVS----TTATIIAMGG-----NQISGTITLG-- 242
G N + L A L D++ T I GG + LG
Sbjct: 278 VLNIGNNDFTGSLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGKG 337
Query: 243 -IKKLIFVN-------LYALTMVKNKLSGPIPHHIASSLGNL-TLLTYLALDNNKLQGNL 293
L F+N L L + ++ G +P+ IA NL T L L LDNN+L G +
Sbjct: 338 EADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIA----NLSTQLMKLKLDNNQLSGTI 393
Query: 294 PSSLGYYQNLMELSVSRNKLSASLPPL 320
P +G NL +L ++ N + S+P L
Sbjct: 394 PPGIGNLVNLTDLILANNDFTGSIPVL 420
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 197/387 (50%), Gaps = 71/387 (18%)
Query: 1 ETDHLALLAIKS-LLHDRRGVTSSWSNSIDLCQWRGVTCTHQHQRINK----------CL 49
ETD LALLAIK+ + D G+T+SW++S+ C W GVTC H+HQR+N L
Sbjct: 69 ETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLSSLHLVGSL 128
Query: 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL-- 107
+P +GN +L +NL NNF G+IP+++GRL RL L L NN FSG+IPANLS CSNL
Sbjct: 129 SPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLVY 188
Query: 108 ---------------------LTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKF 146
+ ++ + +L+G + D +GN ++I+ + F N LEG
Sbjct: 189 FRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGSI 248
Query: 147 PNTLSNLRSLFYDNINRNEFSGLIPSFIFNI-SLKWNFLPENSFTGNLPLEIGVTLPK-- 203
P L L++L + + N FSG+IPS ++N+ SL+ LP N G+LP ++ TLP
Sbjct: 249 PQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQ 308
Query: 204 ----GRNYYILLL------AQKLYWSDVS----TTATIIAMGG-----NQISGTITLG-- 242
G N + L A L D++ T I GG + LG
Sbjct: 309 VLNIGNNDFTGPLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGKG 368
Query: 243 -IKKLIFVN-------LYALTMVKNKLSGPIPHHIASSLGNL-TLLTYLALDNNKLQGNL 293
L F+N L L + ++ G +P+ IA NL T L L LDNN+L G +
Sbjct: 369 EADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIA----NLSTQLMKLKLDNNQLSGTI 424
Query: 294 PSSLGYYQNLMELSVSRNKLSASLPPL 320
P +G NL +L ++ N + S+P L
Sbjct: 425 PPGIGNLVNLTDLILANNDFTGSIPVL 451
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297831962|ref|XP_002883863.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329703|gb|EFH60122.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 127/381 (33%), Positives = 198/381 (51%), Gaps = 70/381 (18%)
Query: 1 ETDHLALLAIKSLLHD-RRGVTSSWSNSIDLCQWRGVTCTHQHQRI----------NKCL 49
ETD +LL KS + + +R V SSW+NS C W+GV C +H+R+ +
Sbjct: 11 ETDRQSLLEFKSQVSEGKRVVLSSWNNSFPHCNWKGVKCGSKHKRVISLDLNGLQLGGVI 70
Query: 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109
+P +GN +L ++L +N F G IPE+VG LFRL+YL +A+N G+IP +LS+CS LL
Sbjct: 71 SPSIGNLSFLISLDLSNNTFGGTIPEEVGNLFRLKYLYMASNVLGGRIPVSLSNCSRLLI 130
Query: 110 K-----------------------LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKF 146
L++ +L G+L IGN ++++ + F N +EG+
Sbjct: 131 LILIKNHLGGGVPSELGSLTNLGILYLGRNNLKGKLPASIGNLTSLRYLGFGVNYIEGEV 190
Query: 147 PNTLSNLRSLFYDNINRNEFSGLIPSFIFNI-SLKWNFLPENSFTGNLPLEIGVTLPK-- 203
P+++S L L ++ N FSG+ PS I+N+ SL++ +L +N F+G++ + G LP
Sbjct: 191 PDSMSKLTQLLRLHLGSNIFSGVFPSCIYNLSSLEYLYLFDNGFSGSMRSDFGSLLPNLQ 250
Query: 204 ----GRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALT---- 255
GRNYY ++ L S+VST ++ M GN ++G+I G K+ + + +L
Sbjct: 251 DLNMGRNYYTGVIPTTL--SNVSTLQRLV-MEGNDLTGSIPHGFGKIPRLRILSLNQNSL 307
Query: 256 ------------------MVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSL 297
+ N +SG IPH I GNL L L L +N L G LP+S+
Sbjct: 308 GSQSFGDLEFLGSLINIYLAMNHISGNIPHDI----GNLVSLRSLDLGDNMLTGLLPTSI 363
Query: 298 GYYQNLMELSVSRNKLSASLP 318
G L LS+ N++S +P
Sbjct: 364 GKLSELGVLSLYSNRISREIP 384
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571732|ref|XP_002526809.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533813|gb|EEF35544.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 185/726 (25%), Positives = 289/726 (39%), Gaps = 250/726 (34%)
Query: 1 ETDHLALLAIKSLL-HDRRGVTSSWSNSIDLCQWRGVTCTHQH-----------QRINKC 48
ETD LAL++ + L+ D GV +SW+NS C W GVTC+ +H Q +
Sbjct: 30 ETDRLALISFRELIVRDPFGVLNSWNNSAHFCDWYGVTCSRRHPDRIIALNLTSQGLVGS 89
Query: 49 LTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL- 107
L+PH+GN +LR+++ +N+FRG+IP ++GRL RL+ L L+NN F G IP NLS+CSNL
Sbjct: 90 LSPHIGNLSFLRYVDFRNNSFRGQIPHEIGRLRRLQCLTLSNNSFCGNIPTNLSYCSNLV 149
Query: 108 ----------------------LTKLFICETHLSGQLLDFIGN----------------- 128
L L + + +L+G + IGN
Sbjct: 150 ILNIIDNKLVGSIPAELGSLRKLEALGLAKNNLTGSIPPSIGNLSSLWQLFTGAIPSSLS 209
Query: 129 -PSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNE---------------------- 165
SA++ + N G FP L L L Y +I+ N+
Sbjct: 210 NASALEQLALYSNGFSGLFPKDLGLLPHLQYVDISENQLIDDLNFIDSLTNCSRLEVLDL 269
Query: 166 ----FSGLIPSFIFNIS--LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWS 219
F G +PS I N+S L + L +N +PL + L N L +
Sbjct: 270 ASNIFQGTLPSSIANLSRDLMYIALSDNQLHNAIPLGVENLL----NLRFFLFDRNYLSG 325
Query: 220 DVS------TTATIIAMGGNQISGTITLGIKKLI--------FVNLYA------------ 253
+ + ++ + GN +GTI + I L F NLY
Sbjct: 326 PIVVDFKNFSRLEMLDLQGNNFTGTIPISISNLSMLSNLYLGFNNLYGSIPSSLGSCHNL 385
Query: 254 --LTMVKNKLSGPIPHH---------------------IASSLGNLTLLTYLALDNNKLQ 290
L + N+L+G IP I S +G+L L L L NN+L
Sbjct: 386 IELDLSYNRLTGSIPGQVIGLSSLSILLNLGFNGLTGPIPSEVGSLQKLAELDLSNNRLS 445
Query: 291 GNLPSSLGYYQNLMELSVSRNKLSASLPPLN-----------SQHNHSFSCPG------- 332
G +P ++G +L +L + N S +P + S++N P
Sbjct: 446 GMIPDTIGKCLSLEQLHLEGNSFSGEIPQVLTALQGLQFLDLSRNNFIGRIPNSLAALDG 505
Query: 333 ---FEFSVIKLEFQIP--------------GNKKLCGGLDELHLLSCHSKESKRQTIKLL 375
S +L ++P GN CGG+ EL L SC SK++ L
Sbjct: 506 LKHLNLSFNQLRGEVPERGIFLNASAVSLLGNNSFCGGITELKLPSCPFTNSKKKN---L 562
Query: 376 TMAISMILSLFILS--------------------------PS--------------TVTN 395
T+A+ +I+ + + + PS T+
Sbjct: 563 TLALKVIIPVVVFAIFLAGFVFFSIFWHQKRMSRKKNISTPSFEHKFLRISYTELFKATD 622
Query: 396 EFSSSNMIGQGSFGSVYKGILGEKW----------------TAGYSE------------- 426
FS +N+IG GS+GSVY+G L ++ ++ SE
Sbjct: 623 GFSKANIIGVGSYGSVYRGTLEQEGIEVAVKVLNMQQRGASSSFMSECQALRSIRHRNLL 682
Query: 427 -------GTDFKGIDFKAVVFDYMQNRSLEDWPY--QSNNKLKPSSLSMIRKLSTTIDVA 477
D++ DFKA+++++M N SLE W + + + + + ++++L+ ID+A
Sbjct: 683 KLLSVCSSIDYEENDFKALIYEFMVNGSLEKWLHAGEGTEQRELGNPKLMQRLNIAIDIA 742
Query: 478 SAIEYL 483
SAIEYL
Sbjct: 743 SAIEYL 748
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 549 | ||||||
| TAIR|locus:2075661 | 1025 | AT3G47110 [Arabidopsis thalian | 0.566 | 0.303 | 0.345 | 3.5e-46 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.571 | 0.311 | 0.291 | 8.2e-43 | |
| TAIR|locus:2149922 | 1031 | EFR "EF-TU receptor" [Arabidop | 0.479 | 0.255 | 0.312 | 6.3e-40 | |
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.568 | 0.308 | 0.305 | 7.3e-38 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.615 | 0.329 | 0.294 | 6.4e-35 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.571 | 0.310 | 0.291 | 1.6e-34 | |
| UNIPROTKB|O24435 | 813 | O24435 "Receptor kinase-like p | 0.637 | 0.430 | 0.292 | 6.5e-29 | |
| TAIR|locus:2020417 | 1101 | AT1G17230 [Arabidopsis thalian | 0.546 | 0.272 | 0.309 | 1e-26 | |
| TAIR|locus:2180617 | 1005 | AT5G25930 [Arabidopsis thalian | 0.593 | 0.324 | 0.259 | 6.8e-25 | |
| TAIR|locus:2170483 | 1173 | FLS2 "FLAGELLIN-SENSITIVE 2" [ | 0.619 | 0.289 | 0.275 | 7.4e-25 |
| TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 351 (128.6 bits), Expect = 3.5e-46, Sum P(4) = 3.5e-46
Identities = 117/339 (34%), Positives = 158/339 (46%)
Query: 1 ETDHLALLAIKSLLHDR-RGVTSSWSNSIDLCQWRGVTCTHQHQRINKC------LT--- 50
ETD ALL KS + + R V SW++S+ LC W GV C +H+R+ LT
Sbjct: 38 ETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVV 97
Query: 51 -PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109
P VGN +LR +NL DN F G IP +VG LFRL+YL ++NN F G IP LS+CS+L T
Sbjct: 98 SPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLST 157
Query: 110 KLFICETHLS-GQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSG 168
L + HL G L+F G+ S + ++ N+L GKFP +L NL SL + N+ G
Sbjct: 158 -LDLSSNHLEQGVPLEF-GSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEG 215
Query: 169 LIPSFIFNISLKWNF-LPENSFTGNLP-----LEIGVTLPKGRNYYILLLAQKLYWSDVS 222
IP I + F + N F G P L + L N + L + +
Sbjct: 216 EIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPD--FGSLL 273
Query: 223 TTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSXXXXXXXXXX 282
I+ MG N +GTI + + +L L + N L+G IP
Sbjct: 274 PNLQILYMGINSFTGTIPETLSNIS--SLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNN 331
Query: 283 XXXXXKLQGNLPSSLGYYQN---LMELSVSRNKLSASLP 318
G+L LG N L L+V NKL LP
Sbjct: 332 NSLGNYSSGDL-DFLGALTNCSQLQYLNVGFNKLGGQLP 369
|
|
| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 8.2e-43, Sum P(4) = 8.2e-43
Identities = 98/336 (29%), Positives = 165/336 (49%)
Query: 1 ETDHLALLAIKSLLHD-RRGVTSSWSNSIDLCQWRGVTCTHQHQRINKC----------L 49
E+D ALL IKS + + +R S+W+NS LC W+ V C +H+R+ + +
Sbjct: 23 ESDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGGVI 82
Query: 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109
+P +GN +L +++L +N+F G IP+++G LFRL+YL + N+ G+IPA+LS+CS LL
Sbjct: 83 SPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRLLY 142
Query: 110 KLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL 169
L + +L + +G+ + + N L+GKFP + NL SL N+ N G
Sbjct: 143 -LDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEGE 201
Query: 170 IPSFIFNISLKWNF-LPENSFTGNLPLEIGVTLPKGRNYYILLLA----QKLYWSDVSTT 224
IP I +S + L N+F+G P L N Y+L K + ++
Sbjct: 202 IPDDIAMLSQMVSLTLTMNNFSGVFPPAF-YNLSSLENLYLLGNGFSGNLKPDFGNLLPN 260
Query: 225 ATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSXXXXXXXXXXXX 284
+++ GN ++G I + + + ++ + KN+++G I +
Sbjct: 261 IHELSLHGNFLTGAIPTTLANISTLEMFGIG--KNRMTGSISPNFGKLENLHYLELANNS 318
Query: 285 XXXKLQGNLP--SSLGYYQNLMELSVSRNKLSASLP 318
G+L +L +L LSVS N+L +LP
Sbjct: 319 LGSYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALP 354
|
|
| TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 6.3e-40, Sum P(4) = 6.3e-40
Identities = 88/282 (31%), Positives = 147/282 (52%)
Query: 1 ETDHLALLAIKSLL--HDRRGVTSSWSNSIDLCQWRGVTCTHQHQRI----------NKC 48
ETD ALL KS + +++R V +SW++S C W GVTC + +R+
Sbjct: 29 ETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGV 88
Query: 49 LTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLL 108
++P +GN +LR +NL DN+F IP+KVGRLFRL+YL ++ N G+IP++LS+CS L
Sbjct: 89 ISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLS 148
Query: 109 TKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSG 168
T + + HL + +G+ S + ++ +N+L G FP +L NL SL + N+ G
Sbjct: 149 T-VDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRG 207
Query: 169 LIPSFIFNISLKWNF-LPENSFTGNLPLEI-GVTLPKGRNYYILLLAQKLY--WSDVSTT 224
IP + ++ F + NSF+G P + ++ + + + L + +
Sbjct: 208 EIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPN 267
Query: 225 ATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIP 266
+ +G NQ +G I + + + + ++ N LSG IP
Sbjct: 268 LRRLLLGTNQFTGAIPKTLANISSLERFDIS--SNYLSGSIP 307
|
|
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 334 (122.6 bits), Expect = 7.3e-38, Sum P(3) = 7.3e-38
Identities = 103/337 (30%), Positives = 158/337 (46%)
Query: 1 ETDHLALLAIKSLL-HDRRGVTSSWSNSIDLCQWRGVTCTHQHQRINKC----------L 49
ETD ALL KS + D+R V SSW++S LC W+GVTC +++R+ +
Sbjct: 23 ETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVI 82
Query: 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109
+P +GN +L ++L +N F G IP++VG+L RLEYL + N+ G IP L +CS LL
Sbjct: 83 SPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLN 142
Query: 110 KLFICETHLSGQLLDFIGN-PSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSG 168
L + L G + +G+ + +Q+ ++ N++ GK P +L NL L ++ N G
Sbjct: 143 -LRLDSNRLGGSVPSELGSLTNLVQLNLYG-NNMRGKLPTSLGNLTLLEQLALSHNNLEG 200
Query: 169 LIPSFIFNISLKWNF-LPENSFTGNLP-----LEIGVTLPKGRNYYILLLAQKLYWSDVS 222
IPS + ++ W+ L N+F+G P L L G N++ L L +
Sbjct: 201 EIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDL--GILL 258
Query: 223 TTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHH-IASSXXXXXXXXX 281
MGGN +G+I + + L L M +N L+G IP +
Sbjct: 259 PNLLSFNMGGNYFTGSIPTTLSNIS--TLERLGMNENNLTGSIPTFGNVPNLKLLFLHTN 316
Query: 282 XXXXXXKLQGNLPSSLGYYQNLMELSVSRNKLSASLP 318
+SL L L + RN+L LP
Sbjct: 317 SLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLP 353
|
|
| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 301 (111.0 bits), Expect = 6.4e-35, Sum P(3) = 6.4e-35
Identities = 109/370 (29%), Positives = 171/370 (46%)
Query: 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHL 118
L F+ L N G IP+ +G L L++L L NN+F G +P++L NL L E +L
Sbjct: 378 LSFLALELNKITGSIPKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGI-LLAYENNL 436
Query: 119 SGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNI- 177
SG + IGN + + +++ N G P TLSNL +L ++ N SG IPS +FNI
Sbjct: 437 SGSIPLAIGNLTELNILLLGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQ 496
Query: 178 --SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILL--LAQKL--YWSDVSTTATIIAMG 231
S+ N + +N+ G++P EIG L ++ L+ K+ D + +
Sbjct: 497 TLSIMIN-VSKNNLEGSIPQEIG-HLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLY-LQ 553
Query: 232 GNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSXXXXXXXXXXXXXXXKLQG 291
N +SG+I + +L L L + N LSG IP +A G
Sbjct: 554 NNLLSGSIPSALGQL--KGLETLDLSSNNLSGQIPTSLAD----ITMLHSLNLSFNSFVG 607
Query: 292 NLPSSLGYYQNLMELSVSRN-KLSASLPPLNSQHNHSFSCPGFE----FSVIKLEFQIPG 346
+P+ +G + +S+ N KL +P L+ CP E F V+ + +
Sbjct: 608 EVPT-IGAFAAASGISIQGNAKLCGGIPDLHLPR----CCPLLENRKHFPVLPISVSLAA 662
Query: 347 NKKLCGGLDELHLLSCHSKESKRQTIKLLTMAISMILSLFILSPSTVTNEFSSSNMIGQG 406
+ L L+LL K +K+ +M ++S L +T + F+ +N++G G
Sbjct: 663 ALAI---LSSLYLLITWHKRTKKGAPSRTSMKGHPLVSYSQLVKAT--DGFAPTNLLGSG 717
Query: 407 SFGSVYKGIL 416
SFGSVYKG L
Sbjct: 718 SFGSVYKGKL 727
|
|
| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 306 (112.8 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 98/336 (29%), Positives = 152/336 (45%)
Query: 1 ETDHLALLAIKSLLHD-RRGVTSSWSNSIDLCQWRGVTCTHQHQRINKC----------L 49
ETD ALL KS + + +R V SSW+NS LC W+ VTC +H+R+ +
Sbjct: 23 ETDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQLGGIV 82
Query: 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109
+P +GN +L ++L DN F G IP +VG LFRLE+L +A N G IPA LS+CS LL
Sbjct: 83 SPSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYMAFNSLEGGIPATLSNCSRLLN 142
Query: 110 KLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL 169
L + L + +G+ + + ++ N+L+GK P +L NL SL N G
Sbjct: 143 -LDLYSNPLRQGVPSELGSLTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGFTDNNIEGE 201
Query: 170 IPSFIFNISLKWNF-LPENSFTGNLPLEIGVTLPKGRNYYILLL----AQKLYWSDVSTT 224
+P + +S L N F G P I L + ++ + K + ++
Sbjct: 202 VPDELARLSQMVGLGLSMNKFFGVFPPAI-YNLSALEDLFLFGSGFSGSLKPDFGNLLPN 260
Query: 225 ATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSXXXXXXXXXXXX 284
+ +G N + G I + + + + + KN ++G I +
Sbjct: 261 IRELNLGENDLVGAIPTTLSNISTLQKFGIN--KNMMTGGIYPNFGKVPSLQYLDLSENP 318
Query: 285 XXXKLQGNLP--SSLGYYQNLMELSVSRNKLSASLP 318
G+L SL +L LSV +L +LP
Sbjct: 319 LGSYTFGDLEFIDSLTNCTHLQLLSVGYTRLGGALP 354
|
|
| UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 6.5e-29, Sum P(2) = 6.5e-29
Identities = 112/383 (29%), Positives = 175/383 (45%)
Query: 3 DHLALLAIKS-LLHDRRGVTSSWSNSI--DLCQWRGVTCTHQH-QRINKC---------- 48
D LALL+ KS LL+ +SW+ S C W GV C +H R+ K
Sbjct: 34 DELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGI 93
Query: 49 LTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLL 108
++P +GN +LR + L DN+ G+IP+++ RL RL+ L+L N SG+IPA L + ++L
Sbjct: 94 ISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSL- 152
Query: 109 TKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSG 168
+ L + LSG + +G + + + EN+L G P++ LR L + ++ N SG
Sbjct: 153 SVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQLRRLSFLSLAFNNLSG 212
Query: 169 LIPSFIFNISLKWNF-LPENSFTGNLPLEIGVTLPKGRNYYILL--LAQKLYWS-DVSTT 224
IP I+NIS F + N +G LP LP + Y+ ++ S ++
Sbjct: 213 AIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFHGRIPASIGNASN 272
Query: 225 ATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSXXXXXXXXXXXX 284
+I +G N SG + I ++ + L ++ ++
Sbjct: 273 ISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETNDWKFMTALTNCSNLQEVEL 332
Query: 285 XXXKLQGNLPSSLGYYQN-LMELSVSRNKLSASLPP-----LNSQH----NHSF--SCPG 332
K G LP S+ + L+ LS+ NK+S SLP +N Q+ N+S S P
Sbjct: 333 GGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLVNLQYLSLANNSLTGSLPS 392
Query: 333 FEFSVIK-LEFQIPGNKKLCGGL 354
FS +K L N KL G L
Sbjct: 393 -SFSKLKNLRRLTVDNNKLIGSL 414
|
|
| TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 318 (117.0 bits), Expect = 1.0e-26, Sum P(3) = 1.0e-26
Identities = 102/330 (30%), Positives = 151/330 (45%)
Query: 7 LLAIKSLLHDRRGVTSSWSNSIDL--CQWRGVTCTHQH---------QRINKCLTPHVGN 55
LL K+ L+D G +SW N +D C W G+ CTH ++ L+P +
Sbjct: 31 LLEFKAFLNDSNGYLASW-NQLDSNPCNWTGIACTHLRTVTSVDLNGMNLSGTLSPLICK 89
Query: 56 FGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICE 115
LR +N+ N G IP+ + LE L L N F G IP L+ L KL++CE
Sbjct: 90 LHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITL-KKLYLCE 148
Query: 116 THLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIF 175
+L G + IGN S++Q ++ N+L G P +++ LR L RN FSG+IPS I
Sbjct: 149 NYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEIS 208
Query: 176 NI-SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTA------TII 228
SLK L EN G+LP + L K +N L+L Q ++ + ++
Sbjct: 209 GCESLKVLGLAENLLEGSLPKQ----LEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVL 264
Query: 229 AMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSXXXXXXXXXXXXXXXK 288
A+ N +G+I I KL + L + N+L+G IP I + +
Sbjct: 265 ALHENYFTGSIPREIGKL--TKMKRLYLYTNQLTGEIPREIGN----LIDAAEIDFSENQ 318
Query: 289 LQGNLPSSLGYYQNLMELSVSRNKLSASLP 318
L G +P G+ NL L + N L +P
Sbjct: 319 LTGFIPKEFGHILNLKLLHLFENILLGPIP 348
|
|
| TAIR|locus:2180617 AT5G25930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 6.8e-25, Sum P(3) = 6.8e-25
Identities = 91/351 (25%), Positives = 160/351 (45%)
Query: 53 VGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLF 112
+GN L+ +NL +N GEIP +G+L L+ + NN +G+IPA + S L +
Sbjct: 302 IGNLTKLQVLNLFNNKLTGEIPPVIGKLPGLKEFKIFNNKLTGEIPAEIGVHSKL-ERFE 360
Query: 113 ICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPS 172
+ E L+G+L + + +Q ++ N+L G+ P +L + +L + N+FSG PS
Sbjct: 361 VSENQLTGKLPENLCKGGKLQGVVVYSNNLTGEIPESLGDCGTLLTVQLQNNDFSGKFPS 420
Query: 173 FIFNISLKWNF-LPENSFTGNLPLEIGVTLPK---GRNYYILLLAQKL-YWSDVSTTATI 227
I+N S ++ + NSFTG LP + + + N + + +K+ WS +
Sbjct: 421 RIWNASSMYSLQVSNNSFTGELPENVAWNMSRIEIDNNRFSGEIPKKIGTWSSLVE---- 476
Query: 228 IAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSXXXXXXXXXXXXXXX 287
G NQ SG + L NL ++ + +N L+G +P I S
Sbjct: 477 FKAGNNQFSGEFPKELTSLS--NLISIFLDENDLTGELPDEIIS----WKSLITLSLSKN 530
Query: 288 KLQGNLPSSLGYYQNLMELSVSRNKLSASLPP-LNSQHNHSFSCP------GFEFSVIKL 340
KL G +P +LG L+ L +S N+ S +PP + S +F+ G + L
Sbjct: 531 KLSGEIPRALGLLPRLLNLDLSENQFSGGIPPEIGSLKLTTFNVSSNRLTGGIPEQLDNL 590
Query: 341 EFQ--IPGNKKLCGGLDELHLLSCHSKESKRQTIKLLTMAISMILSLFILS 389
++ N LC L L C + + +A+ +++++ +L+
Sbjct: 591 AYERSFLNNSNLCADNPVLSLPDCRKQRRGSRGFPGKILAMILVIAVLLLT 641
|
|
| TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 7.4e-25, Sum P(2) = 7.4e-25
Identities = 104/378 (27%), Positives = 172/378 (45%)
Query: 6 ALLAIKS-LLHDRRGVTSSWS--NSIDLCQWRGVTCTHQ-H--------QRINKCLTPHV 53
AL + K+ + +D GV S W+ S+ C W G+TC H +++ L+P +
Sbjct: 33 ALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVLSPAI 92
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
N YL+ ++L N+F G+IP ++G+L L L+L N+FSG IP+ + N+ L +
Sbjct: 93 ANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFY-LDL 151
Query: 114 CETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSF 173
LSG + + I S++ ++ F N+L GK P L +L L N +G IP
Sbjct: 152 RNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVS 211
Query: 174 IFNISLKWNF-LPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDV----STTATII 228
I ++ + L N TG +P + G L N L+L + L D+ ++++
Sbjct: 212 IGTLANLTDLDLSGNQLTGKIPRDFGNLL----NLQSLVLTENLLEGDIPAEIGNCSSLV 267
Query: 229 AMG--GNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSXXXXXXXXXXXXXX 286
+ NQ++G I + L V L AL + KNKL+ IP SS
Sbjct: 268 QLELYDNQLTGKIPAELGNL--VQLQALRIYKNKLTSSIP----SSLFRLTQLTHLGLSE 321
Query: 287 XKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP-LNSQHNHSFSCPGFEFSVIKLEFQIP 345
L G + +G+ ++L L++ N + P + + N + GF + ++P
Sbjct: 322 NHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFN----NISGELP 377
Query: 346 GNKKLCGGLDELHLLSCH 363
+ G L L LS H
Sbjct: 378 AD---LGLLTNLRNLSAH 392
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| Sb02g006280.1 | hypothetical protein (713 aa) | ||||||||||
(Sorghum bicolor) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 549 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-33 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-24 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-18 | |
| pfam08263 | 42 | pfam08263, LRRNT_2, Leucine rich repeat N-terminal | 8e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-05 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-04 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 3e-33
Identities = 104/328 (31%), Positives = 155/328 (47%), Gaps = 66/328 (20%)
Query: 7 LLAIKSLLHDRRGVTSSWSNSIDLCQWRGVTCTHQH---------QRINKCLTPHVGNFG 57
LL+ KS ++D S+W++S D+C W+G+TC + + I+ ++ +
Sbjct: 34 LLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLP 93
Query: 58 YLRFINLVDNNFRGEIPEKVGRL-FRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICET 116
Y++ INL +N G IP+ + L YL L+NN+F+G IP L L +
Sbjct: 94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNN 150
Query: 117 HLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFN 176
LSG++ + IG+ S+++V+ N L GK PN+L+NL SL + + N+ G IP +
Sbjct: 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ 210
Query: 177 I-SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQI 235
+ SLKW +L N+ +G +P EIG
Sbjct: 211 MKSLKWIYLGYNNLSGEIPYEIG------------------------------------- 233
Query: 236 SGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPS 295
L +N L +V N L+GPIP SSLGNL L YL L NKL G +P
Sbjct: 234 ---------GLTSLN--HLDLVYNNLTGPIP----SSLGNLKNLQYLFLYQNKLSGPIPP 278
Query: 296 SLGYYQNLMELSVSRNKLSASLPPLNSQ 323
S+ Q L+ L +S N LS +P L Q
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIPELVIQ 306
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-24
Identities = 101/333 (30%), Positives = 147/333 (44%), Gaps = 70/333 (21%)
Query: 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHL 118
L ++L NNF G+IP + L RL+ L L +N FSG+IP NL +N LT L + +L
Sbjct: 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN-LTVLDLSTNNL 368
Query: 119 SGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPS------ 172
+G++ + + + + +I NSLEG+ P +L RSL + N FSG +PS
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428
Query: 173 --FIFNIS----------LKWNF-------LPENSFTGNLPLEIGVTLPKGRNYYILLLA 213
+ +IS KW+ L N F G LP G +
Sbjct: 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--------------S 474
Query: 214 QKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSL 273
++L D+S NQ SG + + L L + +NKLSG IP ++S
Sbjct: 475 KRLENLDLSR---------NQFSGAVPRKLGS--LSELMQLKLSENKLSGEIPDELSSC- 522
Query: 274 GNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP----------LNSQ 323
L L L +N+L G +P+S L +L +S+N+LS +P +N
Sbjct: 523 ---KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579
Query: 324 HNH---SFSCPGFEFSVIKLEFQIPGNKKLCGG 353
HNH S G F I + GN LCGG
Sbjct: 580 HNHLHGSLPSTG-AFLAINAS-AVAGNIDLCGG 610
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 3e-18
Identities = 78/275 (28%), Positives = 125/275 (45%), Gaps = 23/275 (8%)
Query: 53 VGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLF 112
+G L ++LV NN G IP +G L L+YL L N SG IP ++ L++ L
Sbjct: 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS-LD 290
Query: 113 ICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPS 172
+ + LSG++ + + ++++ N+ GK P L++L L + N+FSG IP
Sbjct: 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350
Query: 173 FIFNISLKWNF----LPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWS---DVSTTA 225
N+ N L N+ TG +P + G + ++L + L +
Sbjct: 351 ---NLGKHNNLTVLDLSTNNLTGEIPEGL---CSSGNLFKLILFSNSLEGEIPKSLGACR 404
Query: 226 TI--IAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLA 283
++ + + N SG + KL V Y L + N L G I S ++ L L+
Sbjct: 405 SLRRVRLQDNSFSGELPSEFTKLPLV--YFLDISNNNLQG----RINSRKWDMPSLQMLS 458
Query: 284 LDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLP 318
L NK G LP S G + L L +SRN+ S ++P
Sbjct: 459 LARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVP 492
|
Length = 968 |
| >gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 8e-08
Identities = 21/40 (52%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 2 TDHLALLAIK-SLLHDRRGVTSSW-SNSIDLCQWRGVTCT 39
D ALLA K SL D G SSW +S D C W GVTC
Sbjct: 3 DDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42
|
Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 25/111 (22%)
Query: 62 INLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQ 121
+ L + RG IP + +L L+ + L+ N G IP +L
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-------------------- 462
Query: 122 LLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPS 172
G+ ++++V+ NS G P +L L SL N+N N SG +P+
Sbjct: 463 -----GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 25/131 (19%)
Query: 42 HQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANL 101
+ + + +G+ L + L +N GEIP+++ +L L L++N SG+IPA+
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543
Query: 102 SHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNI 161
S E + QL +N L G+ P L N+ SL NI
Sbjct: 544 S------------EMPVLSQL-------------DLSQNQLSGEIPKNLGNVESLVQVNI 578
Query: 162 NRNEFSGLIPS 172
+ N G +PS
Sbjct: 579 SHNHLHGSLPS 589
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 58 YLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETH 117
+L+ INL N+ RG IP +G + LE L L+ N F+G IP +L + L L +
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT-SLRILNLNGNS 501
Query: 118 LSGQL 122
LSG++
Sbjct: 502 LSGRV 506
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 251 LYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSR 310
L ++ + N + G IP SLG++T L L L N G++P SLG +L L+++
Sbjct: 444 LQSINLSGNSIRGNIP----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499
Query: 311 NKLSASLP 318
N LS +P
Sbjct: 500 NSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 228 IAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNN 287
I + GN I G I + + +L L + N +G IP SLG LT L L L+ N
Sbjct: 447 INLSGNSIRGNIPPSLGSI--TSLEVLDLSYNSFNGSIP----ESLGQLTSLRILNLNGN 500
Query: 288 KLQGNLPSSLG 298
L G +P++LG
Sbjct: 501 SLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 44 RINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANL 101
I + P +G+ L ++L N+F G IPE +G+L L L L N SG++PA L
Sbjct: 453 SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 549 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.97 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.95 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.94 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.93 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.92 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.91 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 99.87 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.85 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.84 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.82 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.82 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.81 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.81 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 99.79 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.78 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.77 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.76 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.76 | |
| KOG1026 | 774 | consensus Nerve growth factor receptor TRKA and re | 99.75 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 99.74 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.71 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.71 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.69 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.69 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.69 | |
| KOG1095 | 1025 | consensus Protein tyrosine kinase [Signal transduc | 99.68 | |
| KOG0196 | 996 | consensus Tyrosine kinase, EPH (ephrin) receptor f | 99.67 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 99.67 | |
| KOG4278 | 1157 | consensus Protein tyrosine kinase [Signal transduc | 99.66 | |
| KOG0194 | 474 | consensus Protein tyrosine kinase [Signal transduc | 99.63 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.62 | |
| KOG4257 | 974 | consensus Focal adhesion tyrosine kinase FAK, cont | 99.59 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.55 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 99.54 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 99.52 | |
| KOG1025 | 1177 | consensus Epidermal growth factor receptor EGFR an | 99.51 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 99.48 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 99.47 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 99.47 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 99.46 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 99.45 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 99.43 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 99.43 | |
| KOG1094 | 807 | consensus Discoidin domain receptor DDR1 [Signal t | 99.42 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 99.42 | |
| KOG0199 | 1039 | consensus ACK and related non-receptor tyrosine ki | 99.41 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 99.41 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 99.41 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 99.41 | |
| cd05076 | 274 | PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th | 99.4 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 99.4 | |
| KOG2052 | 513 | consensus Activin A type IB receptor, serine/threo | 99.4 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.39 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 99.39 | |
| cd05081 | 284 | PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of | 99.39 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 99.38 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 99.38 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 99.37 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 99.37 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 99.37 | |
| KOG1024 | 563 | consensus Receptor-like protein tyrosine kinase RY | 99.37 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.37 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 99.37 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 99.37 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 99.36 | |
| cd05066 | 267 | PTKc_EphR_A Catalytic domain of the Protein Tyrosi | 99.36 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.36 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 99.36 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 99.36 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 99.36 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 99.36 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 99.35 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 99.35 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 99.35 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 99.34 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 99.34 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 99.34 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 99.34 | |
| cd05039 | 256 | PTKc_Csk_like Catalytic domain of C-terminal Src k | 99.34 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 99.34 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.33 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 99.33 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 99.33 | |
| cd05065 | 269 | PTKc_EphR_B Catalytic domain of the Protein Tyrosi | 99.33 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 99.33 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 99.33 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 99.33 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 99.32 | |
| cd05034 | 261 | PTKc_Src_like Catalytic domain of Src kinase-like | 99.32 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 99.32 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 99.32 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 99.31 | |
| cd05056 | 270 | PTKc_FAK Catalytic domain of the Protein Tyrosine | 99.31 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 99.31 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 99.31 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 99.31 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 99.31 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 99.31 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 99.31 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 99.31 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.3 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 99.3 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 99.29 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 99.29 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.29 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 99.29 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 99.29 | |
| KOG3653 | 534 | consensus Transforming growth factor beta/activin | 99.29 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 99.29 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 99.29 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 99.29 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 99.28 | |
| cd05083 | 254 | PTKc_Chk Catalytic domain of the Protein Tyrosine | 99.28 | |
| cd05038 | 284 | PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P | 99.28 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 99.28 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.28 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 99.27 | |
| KOG0580 | 281 | consensus Serine/threonine protein kinase [Cell cy | 99.27 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 99.27 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 99.27 | |
| KOG0200 | 609 | consensus Fibroblast/platelet-derived growth facto | 99.27 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 99.27 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 99.27 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 99.27 | |
| cd05112 | 256 | PTKc_Itk Catalytic domain of the Protein Tyrosine | 99.26 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 99.26 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 99.26 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.26 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 99.26 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 99.26 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 99.25 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 99.25 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 99.25 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 99.25 | |
| cd05086 | 268 | PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi | 99.25 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 99.24 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 99.24 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 99.23 | |
| cd05046 | 275 | PTK_CCK4 Pseudokinase domain of the Protein Tyrosi | 99.23 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 99.22 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 99.22 | |
| cd06615 | 308 | PKc_MEK Catalytic domain of the dual-specificity P | 99.21 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 99.2 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 99.2 | |
| cd08218 | 256 | STKc_Nek1 Catalytic domain of the Protein Serine/T | 99.2 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 99.2 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 99.19 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 99.19 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 99.19 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 99.19 | |
| cd05042 | 269 | PTKc_Aatyk Catalytic domain of the Protein Tyrosin | 99.18 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 99.18 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 99.18 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 99.18 | |
| cd06631 | 265 | STKc_YSK4 Catalytic domain of the Protein Serine/T | 99.17 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.17 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 99.17 | |
| cd06641 | 277 | STKc_MST3 Catalytic domain of the Protein Serine/T | 99.16 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 99.15 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 99.15 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 99.15 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 99.14 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 99.14 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 99.14 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 99.13 | |
| cd05037 | 259 | PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the | 99.13 | |
| cd08222 | 260 | STKc_Nek11 Catalytic domain of the Protein Serine/ | 99.13 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 99.13 | |
| cd06656 | 297 | STKc_PAK3 Catalytic domain of the Protein Serine/T | 99.12 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 99.12 | |
| cd06632 | 258 | STKc_MEKK1_plant Catalytic domain of the Protein S | 99.12 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 99.11 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 99.11 | |
| cd06611 | 280 | STKc_SLK_like Catalytic domain of Ste20-like kinas | 99.11 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 99.11 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 99.11 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 99.11 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 99.1 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 99.1 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.1 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 99.1 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 99.1 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 99.1 | |
| smart00219 | 258 | TyrKc Tyrosine kinase, catalytic domain. Phosphotr | 99.1 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 99.09 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 99.09 | |
| cd06621 | 287 | PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek | 99.09 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 99.09 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 99.09 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 99.09 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 99.09 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 99.08 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 99.08 | |
| cd07846 | 286 | STKc_CDKL2_3 Catalytic domain of the Serine/Threon | 99.08 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 99.08 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 99.08 | |
| cd06629 | 272 | STKc_MAPKKK_Bck1_like Catalytic domain of fungal B | 99.08 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 99.08 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 99.08 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 99.08 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 99.08 | |
| cd06651 | 266 | STKc_MEKK3 Catalytic domain of the Protein Serine/ | 99.07 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 99.07 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 99.07 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 99.07 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 99.07 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 99.07 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 99.07 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 99.07 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 99.07 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.06 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 99.06 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 99.06 | |
| cd08227 | 327 | PK_STRAD_alpha Pseudokinase domain of STE20-relate | 99.06 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 99.06 | |
| cd06617 | 283 | PKc_MKK3_6 Catalytic domain of the dual-specificit | 99.05 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 99.05 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 99.05 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 99.05 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 99.05 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 99.05 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 99.05 | |
| cd07841 | 298 | STKc_CDK7 Catalytic domain of the Serine/Threonine | 99.05 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.04 | |
| cd08215 | 258 | STKc_Nek Catalytic domain of the Protein Serine/Th | 99.04 | |
| cd06614 | 286 | STKc_PAK Catalytic domain of the Protein Serine/Th | 99.04 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 99.04 | |
| cd06630 | 268 | STKc_MEKK1 Catalytic domain of the Protein Serine/ | 99.04 | |
| cd05633 | 279 | STKc_GRK3 Catalytic domain of the Protein Serine/T | 99.04 | |
| cd06644 | 292 | STKc_STK10_LOK Catalytic domain of the Protein Ser | 99.04 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 99.04 | |
| cd06605 | 265 | PKc_MAPKK Catalytic domain of the dual-specificity | 99.04 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 99.03 | |
| cd06647 | 293 | STKc_PAK_I Catalytic domain of the Protein Serine/ | 99.03 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 99.03 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 99.03 | |
| cd06623 | 264 | PKc_MAPKK_plant_like Catalytic domain of Plant dua | 99.03 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 99.02 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.02 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 99.02 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.02 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 99.02 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 99.02 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.02 | |
| cd08530 | 256 | STKc_CNK2-like Catalytic domain of the Protein Ser | 99.01 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 99.01 | |
| cd05583 | 288 | STKc_MSK_N N-terminal catalytic domain of the Prot | 99.01 | |
| PF00069 | 260 | Pkinase: Protein kinase domain Protein kinase; unc | 99.01 | |
| cd07847 | 286 | STKc_CDKL1_4 Catalytic domain of the Serine/Threon | 99.01 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 99.0 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 99.0 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 99.0 | |
| cd06606 | 260 | STKc_MAPKKK Catalytic domain of the Protein Serine | 99.0 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 98.99 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 98.99 | |
| cd07830 | 283 | STKc_MAK_like Catalytic domain of Male germ cell-A | 98.99 | |
| cd07836 | 284 | STKc_Pho85 Catalytic domain of the Serine/Threonin | 98.99 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 98.99 | |
| PHA03209 | 357 | serine/threonine kinase US3; Provisional | 98.99 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 98.98 | |
| cd06626 | 264 | STKc_MEKK4 Catalytic domain of the Protein Serine/ | 98.98 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 98.98 | |
| cd06607 | 307 | STKc_TAO Catalytic domain of the Protein Serine/Th | 98.98 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.98 | |
| cd06635 | 317 | STKc_TAO1 Catalytic domain of the Protein Serine/T | 98.98 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 98.97 | |
| cd07860 | 284 | STKc_CDK2_3 Catalytic domain of the Serine/Threoni | 98.97 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 98.97 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 98.96 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 98.96 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 98.95 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 98.95 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 98.95 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 98.94 | |
| cd05122 | 253 | PKc_STE Catalytic domain of STE family Protein Kin | 98.94 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 98.94 | |
| cd07843 | 293 | STKc_CDC2L1 Catalytic domain of the Serine/Threoni | 98.93 | |
| cd05579 | 265 | STKc_MAST_like Catalytic domain of Microtubule-ass | 98.93 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 98.93 | |
| cd06627 | 254 | STKc_Cdc7_like Catalytic domain of Cell division c | 98.93 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 98.93 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 98.92 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 98.92 | |
| cd06652 | 265 | STKc_MEKK2 Catalytic domain of the Protein Serine/ | 98.92 | |
| cd05578 | 258 | STKc_Yank1 Catalytic domain of the Protein Serine/ | 98.92 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 98.92 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 98.92 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 98.92 | |
| cd07833 | 288 | STKc_CDKL Catalytic domain of Cyclin-Dependent pro | 98.92 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 98.92 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.91 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 98.91 | |
| cd07832 | 286 | STKc_CCRK Catalytic domain of the Serine/Threonine | 98.91 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 98.91 | |
| cd07838 | 287 | STKc_CDK4_6_like Catalytic domain of Cyclin-Depend | 98.91 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 98.9 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 98.9 | |
| cd07864 | 302 | STKc_CDK12 Catalytic domain of the Serine/Threonin | 98.9 | |
| cd07835 | 283 | STKc_CDK1_like Catalytic domain of Cyclin-Dependen | 98.9 | |
| cd05606 | 278 | STKc_beta_ARK Catalytic domain of the Protein Seri | 98.9 | |
| cd05572 | 262 | STKc_cGK_PKG Catalytic domain of the Protein Serin | 98.9 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 98.89 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 98.89 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.89 | |
| cd05580 | 290 | STKc_PKA Catalytic domain of the Protein Serine/Th | 98.88 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 98.88 | |
| cd05577 | 277 | STKc_GRK Catalytic domain of the Protein Serine/Th | 98.88 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 98.88 | |
| cd07840 | 287 | STKc_CDK9_like Catalytic domain of Cyclin-Dependen | 98.87 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.87 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 98.87 | |
| cd06618 | 296 | PKc_MKK7 Catalytic domain of the dual-specificity | 98.87 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 98.87 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 98.86 | |
| cd06634 | 308 | STKc_TAO2 Catalytic domain of the Protein Serine/T | 98.86 | |
| KOG0587 | 953 | consensus Traf2- and Nck-interacting kinase and re | 98.86 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 98.86 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 98.85 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 98.85 | |
| cd07870 | 291 | STKc_PFTAIRE2 Catalytic domain of the Serine/Threo | 98.85 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 98.84 | |
| cd07844 | 291 | STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like | 98.84 | |
| cd07858 | 337 | STKc_TEY_MAPK_plant Catalytic domain of the Serine | 98.84 | |
| KOG0600 | 560 | consensus Cdc2-related protein kinase [Cell cycle | 98.84 | |
| cd06633 | 313 | STKc_TAO3 Catalytic domain of the Protein Serine/T | 98.83 | |
| cd06657 | 292 | STKc_PAK4 Catalytic domain of the Protein Serine/T | 98.83 | |
| cd05581 | 280 | STKc_PDK1 Catalytic domain of the Protein Serine/T | 98.83 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 98.82 | |
| cd05118 | 283 | STKc_CMGC Catalytic domain of CMGC family Serine/T | 98.82 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 98.82 | |
| cd08226 | 328 | PK_STRAD_beta Pseudokinase domain of STE20-related | 98.82 | |
| KOG0659 | 318 | consensus Cdk activating kinase (CAK)/RNA polymera | 98.81 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 98.81 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 98.81 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.81 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.81 | |
| cd07852 | 337 | STKc_MAPK15 Catalytic domain of the Serine/Threoni | 98.8 | |
| PLN00009 | 294 | cyclin-dependent kinase A; Provisional | 98.8 | |
| KOG0577 | 948 | consensus Serine/threonine protein kinase [Signal | 98.8 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.79 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 98.79 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.77 | |
| cd05613 | 290 | STKc_MSK1_N N-terminal catalytic domain of the Pro | 98.76 | |
| cd07829 | 282 | STKc_CDK_like Catalytic domain of Cyclin-Dependent | 98.76 | |
| cd07865 | 310 | STKc_CDK9 Catalytic domain of the Serine/Threonine | 98.76 | |
| cd07849 | 336 | STKc_ERK1_2_like Catalytic domain of Extracellular | 98.76 | |
| cd05123 | 250 | STKc_AGC Catalytic domain of AGC family Protein Se | 98.75 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 98.74 | |
| KOG0611 | 668 | consensus Predicted serine/threonine protein kinas | 98.74 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 98.73 | |
| PTZ00284 | 467 | protein kinase; Provisional | 98.73 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.72 | |
| cd07845 | 309 | STKc_CDK10 Catalytic domain of the Serine/Threonin | 98.72 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 98.72 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 98.71 | |
| cd07851 | 343 | STKc_p38 Catalytic domain of the Serine/Threonine | 98.7 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 98.7 | |
| cd08216 | 314 | PK_STRAD Pseudokinase domain of STE20-related kina | 98.7 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 98.69 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 98.69 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 98.69 | |
| cd07880 | 343 | STKc_p38gamma_MAPK12 Catalytic domain of the Serin | 98.69 | |
| cd07855 | 334 | STKc_ERK5 Catalytic domain of the Serine/Threonine | 98.69 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 98.68 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 98.67 | |
| cd05623 | 332 | STKc_MRCK_alpha Catalytic domain of the Protein Se | 98.67 | |
| cd05624 | 331 | STKc_MRCK_beta Catalytic domain of the Protein Ser | 98.67 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 98.66 | |
| cd06653 | 264 | STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina | 98.66 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 98.65 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 98.65 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 98.65 | |
| PTZ00024 | 335 | cyclin-dependent protein kinase; Provisional | 98.65 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 98.64 | |
| cd07856 | 328 | STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre | 98.64 | |
| cd05576 | 237 | STKc_RPK118_like Catalytic domain of the Protein S | 98.62 | |
| PLN03225 | 566 | Serine/threonine-protein kinase SNT7; Provisional | 98.62 | |
| cd05629 | 377 | STKc_NDR_like_fungal Catalytic domain of Fungal Nu | 98.62 | |
| cd07834 | 330 | STKc_MAPK Catalytic domain of the Serine/Threonine | 98.62 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 98.61 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 98.61 | |
| cd05597 | 331 | STKc_DMPK_like Catalytic domain of Myotonic Dystro | 98.61 | |
| KOG0593 | 396 | consensus Predicted protein kinase KKIAMRE [Genera | 98.6 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 98.59 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 98.59 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 98.58 | |
| cd07854 | 342 | STKc_MAPK4_6 Catalytic domain of the Serine/Threon | 98.57 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 98.57 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 98.56 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 98.56 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 98.55 | |
| cd07866 | 311 | STKc_BUR1 Catalytic domain of the Serine/Threonine | 98.55 | |
| KOG0658 | 364 | consensus Glycogen synthase kinase-3 [Carbohydrate | 98.53 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 98.53 | |
| cd07842 | 316 | STKc_CDK8_like Catalytic domain of Cyclin-Dependen | 98.53 | |
| smart00220 | 244 | S_TKc Serine/Threonine protein kinases, catalytic | 98.52 | |
| cd00180 | 215 | PKc Catalytic domain of Protein Kinases. Protein K | 98.51 | |
| KOG0663 | 419 | consensus Protein kinase PITSLRE and related kinas | 98.5 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 98.49 | |
| cd07850 | 353 | STKc_JNK Catalytic domain of the Serine/Threonine | 98.48 | |
| cd07879 | 342 | STKc_p38delta_MAPK13 Catalytic domain of the Serin | 98.47 | |
| cd07857 | 332 | STKc_MPK1 Catalytic domain of the Serine/Threonine | 98.47 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 98.42 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 98.41 | |
| KOG0667 | 586 | consensus Dual-specificity tyrosine-phosphorylatio | 98.4 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 98.4 | |
| cd07877 | 345 | STKc_p38alpha_MAPK14 Catalytic domain of the Serin | 98.39 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 98.39 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 98.39 | |
| PLN03224 | 507 | probable serine/threonine protein kinase; Provisio | 98.34 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 98.34 | |
| PHA03210 | 501 | serine/threonine kinase US3; Provisional | 98.34 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.32 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 98.29 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.28 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 98.28 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.26 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.26 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.22 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 98.21 | |
| KOG1023 | 484 | consensus Natriuretic peptide receptor, guanylate | 98.19 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.18 | |
| KOG0586 | 596 | consensus Serine/threonine protein kinase [General | 98.17 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.16 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 98.14 | |
| smart00750 | 176 | KIND kinase non-catalytic C-lobe domain. It is an | 98.13 | |
| KOG0671 | 415 | consensus LAMMER dual specificity kinases [Signal | 98.12 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.11 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 98.03 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.02 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 98.02 | |
| KOG0594 | 323 | consensus Protein kinase PCTAIRE and related kinas | 97.98 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.95 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 97.88 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.85 | |
| KOG1151 | 775 | consensus Tousled-like protein kinase [Signal tran | 97.84 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 97.82 | |
| KOG1345 | 378 | consensus Serine/threonine kinase [Signal transduc | 97.82 | |
| KOG0660 | 359 | consensus Mitogen-activated protein kinase [Signal | 97.79 | |
| PRK14879 | 211 | serine/threonine protein kinase; Provisional | 97.78 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 97.78 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 97.75 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.75 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.71 | |
| cd05147 | 190 | RIO1_euk RIO kinase family; eukaryotic RIO1, catal | 97.66 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 97.65 | |
| TIGR03724 | 199 | arch_bud32 Kae1-associated kinase Bud32. Members o | 97.65 | |
| smart00221 | 225 | STYKc Protein kinase; unclassified specificity. Ph | 97.64 | |
| KOG0695 | 593 | consensus Serine/threonine protein kinase [Signal | 97.63 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.59 | |
| KOG0669 | 376 | consensus Cyclin T-dependent kinase CDK9 [Cell cyc | 97.55 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.52 | |
| KOG0666 | 438 | consensus Cyclin C-dependent kinase CDK8 [Transcri | 97.51 | |
| cd05145 | 190 | RIO1_like RIO kinase family; RIO1, RIO3 and simila | 97.45 | |
| KOG0664 | 449 | consensus Nemo-like MAPK-related serine/threonine | 97.39 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.31 | |
| KOG4236 | 888 | consensus Serine/threonine protein kinase PKC mu/P | 97.29 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.26 | |
| KOG0662 | 292 | consensus Cyclin-dependent kinase CDK5 [Intracellu | 97.24 | |
| KOG0608 | 1034 | consensus Warts/lats-like serine threonine kinases | 97.24 | |
| KOG1166 | 974 | consensus Mitotic checkpoint serine/threonine prot | 97.23 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.16 | |
| smart00090 | 237 | RIO RIO-like kinase. | 97.12 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.04 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.02 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 96.99 | |
| KOG1152 | 772 | consensus Signal transduction serine/threonine kin | 96.96 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 96.82 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.78 | |
| PRK10345 | 210 | hypothetical protein; Provisional | 96.74 | |
| KOG1290 | 590 | consensus Serine/threonine protein kinase [Signal | 96.7 | |
| cd05144 | 198 | RIO2_C RIO kinase family; RIO2, C-terminal catalyt | 96.56 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.5 | |
| KOG1006 | 361 | consensus Mitogen-activated protein kinase (MAPK) | 96.46 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.19 | |
| KOG1167 | 418 | consensus Serine/threonine protein kinase of the C | 95.95 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 95.95 | |
| KOG1164 | 322 | consensus Casein kinase (serine/threonine/tyrosine | 95.94 | |
| KOG1165 | 449 | consensus Casein kinase (serine/threonine/tyrosine | 95.93 | |
| KOG0668 | 338 | consensus Casein kinase II, alpha subunit [Signal | 95.86 | |
| KOG1266 | 458 | consensus Protein kinase [Signal transduction mech | 95.83 | |
| cd05119 | 187 | RIO RIO kinase family, catalytic domain. The RIO k | 95.82 | |
| KOG0984 | 282 | consensus Mitogen-activated protein kinase (MAPK) | 95.78 | |
| KOG1163 | 341 | consensus Casein kinase (serine/threonine/tyrosine | 95.76 | |
| cd05120 | 155 | APH_ChoK_like Aminoglycoside 3'-phosphotransferase | 95.59 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.5 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 95.4 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.31 | |
| KOG4158 | 598 | consensus BRPK/PTEN-induced protein kinase [Signal | 95.28 | |
| PRK12274 | 218 | serine/threonine protein kinase; Provisional | 95.28 | |
| cd05154 | 223 | ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an | 95.04 | |
| PRK10359 | 232 | lipopolysaccharide core biosynthesis protein; Prov | 94.87 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.73 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.42 | |
| PRK01723 | 239 | 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | 94.41 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 94.22 | |
| TIGR01982 | 437 | UbiB 2-polyprenylphenol 6-hydroxylase. This model | 94.08 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.98 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-58 Score=522.53 Aligned_cols=200 Identities=25% Similarity=0.386 Sum_probs=128.5
Q ss_pred ccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC----------CCCCCC-CcccCCcc-ccc
Q 039925 270 ASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL----------NSQHNH-SFSCPGFE-FSV 337 (549)
Q Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----------~ls~N~-~~~ip~~~-~~~ 337 (549)
|..+..+++|++|+|++|.+++.+|..+..+++|+.|+|++|++++.+|.. ++++|+ .+.+|... +..
T Consensus 516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~ 595 (968)
T PLN00113 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA 595 (968)
T ss_pred ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcc
Confidence 455566666666666666666666666666667777777777776666654 666666 34566543 222
Q ss_pred ccceeeecCCCCCCCCccccCcccCCCCCCCccc-eeehhHHHHHHHHHh-----hc-C---------------cc----
Q 039925 338 IKLEFQIPGNKKLCGGLDELHLLSCHSKESKRQT-IKLLTMAISMILSLF-----IL-S---------------PS---- 391 (549)
Q Consensus 338 l~l~~~~~gn~~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~-~---------------~~---- 391 (549)
+.- ..+.||+.+|+..+....++|....+.... +.+++++++++++++ ++ . .|
T Consensus 596 ~~~-~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (968)
T PLN00113 596 INA-SAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWELQF 674 (968)
T ss_pred cCh-hhhcCCccccCCccccCCCCCccccccceeeeehhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccc
Confidence 221 467899999987544445567543222221 222211111111111 11 0 01
Q ss_pred ------------cccccCcCCCccccCceecEEEEEeC-CCce-------------------------------eEEEec
Q 039925 392 ------------TVTNEFSSSNMIGQGSFGSVYKGILG-EKWT-------------------------------AGYSEG 427 (549)
Q Consensus 392 ------------~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-------------------------------~g~~~~ 427 (549)
.....|...++||+|+||.||+|+.. ++.. +|+|..
T Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~l~~l~HpnIv~~~~~~~~ 754 (968)
T PLN00113 675 FDSKVSKSITINDILSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIADMGKLQHPNIVKLIGLCRS 754 (968)
T ss_pred cccccchhhhHHHHHhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccccHHHHHHHhhCCCCCcceEEEEEEc
Confidence 01234566788999999999999974 3322 677776
Q ss_pred cccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 428 TDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 428 ~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++|||||++|+|.++++ .++|.++.+|+.|+|+||+|||
T Consensus 755 -----~~~~~lv~Ey~~~g~L~~~l~---------~l~~~~~~~i~~~ia~~L~yLH 797 (968)
T PLN00113 755 -----EKGAYLIHEYIEGKNLSEVLR---------NLSWERRRKIAIGIAKALRFLH 797 (968)
T ss_pred -----CCCCEEEEeCCCCCcHHHHHh---------cCCHHHHHHHHHHHHHHHHHhc
Confidence 678899999999999999996 2789999999999999999999
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=293.65 Aligned_cols=306 Identities=31% Similarity=0.494 Sum_probs=224.5
Q ss_pred hhHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceeCCCCCceE----------eecCccccCCCCCCEEEccCCccee
Q 039925 2 TDHLALLAIKSLLHDRRGVTSSWSNSIDLCQWRGVTCTHQHQRIN----------KCLTPHVGNFGYLRFINLVDNNFRG 71 (549)
Q Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~----------g~lp~~~~~l~~L~~L~L~~n~l~~ 71 (549)
.|++||++||+++.+|.+.+.+|+...+||.|.||.|+.. .+|+ |.+|..|..+++|++|+|++|++++
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~ 107 (968)
T PLN00113 29 EELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107 (968)
T ss_pred HHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC
Confidence 5889999999999888778899988889999999999743 2333 6788889999999999999999998
Q ss_pred cCCcccc-CCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccc
Q 039925 72 EIPEKVG-RLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTL 150 (549)
Q Consensus 72 ~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~ 150 (549)
.+|..+. .+++|++|+|++|++++.+|. ..+++| ++|+|++|.+++.+|..++++++|++|+|++|.+.+.+|..+
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L-~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL-ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccccCc--cccCCC-CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence 8887655 889999999999988877775 456777 888888888877788888888888888888888877788888
Q ss_pred cCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeeccc-ccc--cccccCccccc
Q 039925 151 SNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLL-AQK--LYWSDVSTTAT 226 (549)
Q Consensus 151 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~-~~~--l~~l~~~~~L~ 226 (549)
.++++|++|+|++|.+.+.+|..+..++ |++|++++|.+++.+|..+. .+++|++|+++++ +.. ...+...++|+
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 8888888888888888777788888777 88888888888777777776 7788888887762 111 11223334666
Q ss_pred EEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEE
Q 039925 227 IIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMEL 306 (549)
Q Consensus 227 ~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 306 (549)
.|++++|.+.+.+|..+..+ ++|+.|++++|.+.+.+ |..+..+++|+.|++++|.+.+.+|..+..+++|+.|
T Consensus 264 ~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 264 YLFLYQNKLSGPIPPSIFSL--QKLISLDLSDNSLSGEI----PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred EEECcCCeeeccCchhHhhc--cCcCEEECcCCeeccCC----ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 66666666666666666666 66666666666665544 3444555555555555555555555555555555555
Q ss_pred EccCCcccccCC
Q 039925 307 SVSRNKLSASLP 318 (549)
Q Consensus 307 ~Ls~N~l~~~~p 318 (549)
++++|.+++.+|
T Consensus 338 ~L~~n~l~~~~p 349 (968)
T PLN00113 338 QLWSNKFSGEIP 349 (968)
T ss_pred ECcCCCCcCcCC
Confidence 555555554444
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-29 Score=248.26 Aligned_cols=270 Identities=19% Similarity=0.142 Sum_probs=151.6
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeec
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKE 139 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (549)
+.||+++|.++..-+..|-++++|+.+++.+|.++ .+|.......++ +.|+|.+|.|+..-.+.+..++.|+.|||+.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl-~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHL-EKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccce-eEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 44666666655555555555666666666666555 555544444444 5555555555544444444445555555555
Q ss_pred ceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecc-------
Q 039925 140 NSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILL------- 211 (549)
Q Consensus 140 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~------- 211 (549)
|.|+..--.+|..-.++++|+|++|+|+..-...|.++. |..|.|++|+++ .+|...+++++.|+.|++..
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeeh
Confidence 555422223333334444444444444444444444444 444444444444 44444333344444444433
Q ss_pred -----------------------------cccccc---------------cccCcccccEEEccccccccccChhhhhcc
Q 039925 212 -----------------------------LAQKLY---------------WSDVSTTATIIAMGGNQISGTITLGIKKLI 247 (549)
Q Consensus 212 -----------------------------~~~~l~---------------~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 247 (549)
.+.++. |+-....|+.|++++|.|....++.++..
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft- 316 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT- 316 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc-
Confidence 011111 11223467777777777777777777777
Q ss_pred ccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC-------
Q 039925 248 FVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL------- 320 (549)
Q Consensus 248 ~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~------- 320 (549)
++|+.|+|++|+++ .++ +..|..+..|++|+|++|.+...-...|..+++|+.|||++|.++..|.+.
T Consensus 317 -qkL~~LdLs~N~i~-~l~---~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 317 -QKLKELDLSSNRIT-RLD---EGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred -ccceeEeccccccc-cCC---hhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 78888888888877 343 456667777777777777777544556677777777777777777655444
Q ss_pred ------CCCCCCCcccCCcccccc
Q 039925 321 ------NSQHNHSFSCPGFEFSVI 338 (549)
Q Consensus 321 ------~ls~N~~~~ip~~~~~~l 338 (549)
++.+|++..||...|..+
T Consensus 392 ~~LrkL~l~gNqlk~I~krAfsgl 415 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKRAFSGL 415 (873)
T ss_pred hhhhheeecCceeeecchhhhccC
Confidence 666777777766654444
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-27 Score=236.59 Aligned_cols=267 Identities=19% Similarity=0.107 Sum_probs=199.5
Q ss_pred CCEEEccCCcceecCCccccCC--CCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEE
Q 039925 59 LRFINLVDNNFRGEIPEKVGRL--FRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMI 136 (549)
Q Consensus 59 L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 136 (549)
-+.||.+++.+...--..+... +.-+.|++++|++...-+..|.++++| +.+++.+|.++ .+|...+...+|+.|+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nL-q~v~l~~N~Lt-~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNL-QEVNLNKNELT-RIPRFGHESGHLEKLD 131 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcc-eeeeeccchhh-hcccccccccceeEEe
Confidence 3457888887763211122221 234679999999998888889999999 99999999998 7788777778899999
Q ss_pred eecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecc-c--
Q 039925 137 FKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILL-L-- 212 (549)
Q Consensus 137 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~-~-- 212 (549)
|.+|.|+..-.+++.-++.|+.|||+.|.|+...-.+|..-. +++|+|++|.|+..-...|. .+.+|..|.++. .
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccc-ccchheeeecccCccc
Confidence 999999988888899999999999999999955545666544 99999999999944444444 888999999987 1
Q ss_pred ---------ccccccc---------------cCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCc
Q 039925 213 ---------AQKLYWS---------------DVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHH 268 (549)
Q Consensus 213 ---------~~~l~~l---------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~ 268 (549)
+..++.+ +..++|+.|.|..|.+....-..|-.+ .++++|+|+.|+++..-
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l--~kme~l~L~~N~l~~vn--- 285 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL--EKMEHLNLETNRLQAVN--- 285 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeee--cccceeecccchhhhhh---
Confidence 2222222 122355555555565554444556666 78888888888887333
Q ss_pred CccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC----------CCCCCCCcccCCcc
Q 039925 269 IASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL----------NSQHNHSFSCPGFE 334 (549)
Q Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----------~ls~N~~~~ip~~~ 334 (549)
..++-++++|+.|+||+|.|...-++++...++|+.|+|++|+|+..-+.. ++++|.+..+-+..
T Consensus 286 -~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 286 -EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred -cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 467788999999999999999888889999999999999999998533322 66677655554444
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-28 Score=241.85 Aligned_cols=290 Identities=19% Similarity=0.260 Sum_probs=185.7
Q ss_pred ecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeeccccccc-ccCCcccccccCccceeeeccccccccccccc
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFS-GKIPANLSHCSNLLTKLFICETHLSGQLLDFI 126 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~ 126 (549)
.+|+.++.+.+|++|.+++|++. .+-..++.|+.|+.+++.+|++. .-+|..++.+..| ..||||+|++. ..|..+
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL-t~lDLShNqL~-EvP~~L 122 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL-TILDLSHNQLR-EVPTNL 122 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccc-eeeecchhhhh-hcchhh
Confidence 45666666666666666666666 44455666666666666666654 2356666666666 66666666665 556666
Q ss_pred CCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCc
Q 039925 127 GNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGR 205 (549)
Q Consensus 127 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~ 205 (549)
..-+++-+|+||+|+|..+...-|-+++.|-.|+|++|++. .+|..+..+. |++|.|++|.+...--..+. .+++|+
T Consensus 123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~ 200 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLS 200 (1255)
T ss_pred hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhh
Confidence 66666666666666666332233456666666666666665 4555566666 66666666665421111111 455566
Q ss_pred Eeeecccccccc----cccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCe
Q 039925 206 NYYILLLAQKLY----WSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTY 281 (549)
Q Consensus 206 ~L~l~~~~~~l~----~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~ 281 (549)
.|++++.-..+. .+.-..+|..+|++.|.+. .+|+.+-++ ++|+.|+||+|.|+ . +....+...+|++
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l--~~LrrLNLS~N~it-e----L~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL--RNLRRLNLSGNKIT-E----LNMTEGEWENLET 272 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhh--hhhheeccCcCcee-e----eeccHHHHhhhhh
Confidence 666665222111 2223347788888888887 678888888 88888888888887 2 2344556677777
Q ss_pred eeccCccccccCCccccCCCCCCEEEccCCccc-ccCCCC---------------------------------CCCCCCC
Q 039925 282 LALDNNKLQGNLPSSLGYYQNLMELSVSRNKLS-ASLPPL---------------------------------NSQHNHS 327 (549)
Q Consensus 282 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~---------------------------------~ls~N~~ 327 (549)
|+||.|+++ .+|++++++++|+.|.+.+|+++ .-||++ .+++|++
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccce
Confidence 788888777 67777777777777777777765 124544 7777777
Q ss_pred cccCCcc--cccccceeeecCCCCCCC
Q 039925 328 FSCPGFE--FSVIKLEFQIPGNKKLCG 352 (549)
Q Consensus 328 ~~ip~~~--~~~l~l~~~~~gn~~~c~ 352 (549)
-++|..+ +..++. +++..||.+--
T Consensus 352 iTLPeaIHlL~~l~v-LDlreNpnLVM 377 (1255)
T KOG0444|consen 352 ITLPEAIHLLPDLKV-LDLRENPNLVM 377 (1255)
T ss_pred eechhhhhhcCCcce-eeccCCcCccC
Confidence 7777777 555554 67788887763
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-27 Score=233.19 Aligned_cols=292 Identities=22% Similarity=0.275 Sum_probs=191.2
Q ss_pred cCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcc-cccccCccceeeecccccccccccccC
Q 039925 49 LTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPAN-LSHCSNLLTKLFICETHLSGQLLDFIG 127 (549)
Q Consensus 49 lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~~L~Ls~n~l~~~~~~~~~ 127 (549)
||+.+..+..|++||||+|+++ ..|..+...+++-+|+||+|+|. .+|.. |-++..| -+||||+|++. .+|..+.
T Consensus 95 iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDL-LfLDLS~NrLe-~LPPQ~R 170 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDL-LFLDLSNNRLE-MLPPQIR 170 (1255)
T ss_pred CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhH-hhhccccchhh-hcCHHHH
Confidence 4444444444444444444444 44444444444444444444444 34433 2344444 44444444444 3333344
Q ss_pred CCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcce-ecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCc
Q 039925 128 NPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFS-GLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGR 205 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~ 205 (549)
.+..|++|+|++|.+.-.--..+..|++|+.|.+++.+-+ ..+|.++..+. |..+|++.|.+. .+|+.+. ++++|+
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~Lr 248 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLR 248 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhh
Confidence 4444444444444443111122233444444444443322 35788888888 999999999998 8999998 999999
Q ss_pred Eeeecc-ccccccc-ccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeee
Q 039925 206 NYYILL-LAQKLYW-SDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLA 283 (549)
Q Consensus 206 ~L~l~~-~~~~l~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~ 283 (549)
.|+++. .++.+.. ...-.+|++|+++.|+++ .+|+.+.++ ++|+.|.+.+|+++-. -||..++.+..|+.+.
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL--~kL~kLy~n~NkL~Fe---GiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL--TKLTKLYANNNKLTFE---GIPSGIGKLIQLEVFH 322 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhh--HHHHHHHhccCccccc---CCccchhhhhhhHHHH
Confidence 999987 3444431 122348999999999998 789999999 9999999999998743 3588999999999999
Q ss_pred ccCccccccCCccccCCCCCCEEEccCCcccccCCCC----------CCCCCCCcccCCcc------cccccceeeecCC
Q 039925 284 LDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL----------NSQHNHSFSCPGFE------FSVIKLEFQIPGN 347 (549)
Q Consensus 284 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----------~ls~N~~~~ip~~~------~~~l~l~~~~~gn 347 (549)
.++|.+. .+|..++.+..|+.|.|+.|++-. +|+. |+..|.--.+|+.- +...++.+++..-
T Consensus 323 aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~Q 400 (1255)
T KOG0444|consen 323 AANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQ 400 (1255)
T ss_pred hhccccc-cCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhH
Confidence 9999998 899999999999999999999874 5554 88899866666654 2222444455544
Q ss_pred CCCCCCc
Q 039925 348 KKLCGGL 354 (549)
Q Consensus 348 ~~~c~~~ 354 (549)
-.+.|..
T Consensus 401 lrlAG~~ 407 (1255)
T KOG0444|consen 401 LRLAGQM 407 (1255)
T ss_pred HhhccCC
Confidence 4555543
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-26 Score=219.55 Aligned_cols=260 Identities=26% Similarity=0.335 Sum_probs=165.0
Q ss_pred ecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccc----------------------cCCccccccc
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSG----------------------KIPANLSHCS 105 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~----------------------~~p~~l~~l~ 105 (549)
++|++++.+..++.|+.+.|+++ .+|+.+..+.+|+.|+.++|++.. .+|.+++.+.
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS 160 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence 45555555555555555555555 455555555555555555555440 4444444444
Q ss_pred CccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeC
Q 039925 106 NLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFL 184 (549)
Q Consensus 106 ~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l 184 (549)
++ ..|++.+|+++...|..+. ++.|++||...|-++ .+|+.++.+.+|+-|+|..|++. .+| .|.+++ |++|++
T Consensus 161 ~l-~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~ 235 (565)
T KOG0472|consen 161 KL-SKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHV 235 (565)
T ss_pred HH-HHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHh
Confidence 44 5555555555533333333 666666666666666 67777777777777777777776 555 677777 777777
Q ss_pred CCCcCcccCchhhhhcCCCCcEeeecc-cccccc-cccCcccccEEEccccccccccChhhhhccccCccEEEcCCCccc
Q 039925 185 PENSFTGNLPLEIGVTLPKGRNYYILL-LAQKLY-WSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLS 262 (549)
Q Consensus 185 ~~n~l~~~~p~~~~~~l~~L~~L~l~~-~~~~l~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~ 262 (549)
+.|++. .+|.+....++++..|++.. .++.+. .+-..++|++||+++|.++ .+|..++++ +|+.|-+.+|.+.
T Consensus 236 g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl---hL~~L~leGNPlr 310 (565)
T KOG0472|consen 236 GENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL---HLKFLALEGNPLR 310 (565)
T ss_pred cccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc-cCCcccccc---eeeehhhcCCchH
Confidence 777777 77777776777777777765 233222 1223346777777777776 344455554 4555556666442
Q ss_pred cc------------------------------------------------------------------------------
Q 039925 263 GP------------------------------------------------------------------------------ 264 (549)
Q Consensus 263 ~~------------------------------------------------------------------------------ 264 (549)
..
T Consensus 311 TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~V 390 (565)
T KOG0472|consen 311 TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIV 390 (565)
T ss_pred HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcce
Confidence 10
Q ss_pred ------------CCC--------------------cCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCc
Q 039925 265 ------------IPH--------------------HIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNK 312 (549)
Q Consensus 265 ------------~p~--------------------~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 312 (549)
+|. ++|..+..+++|..|+|++|-+. .+|..++.+..|+.||+++|+
T Consensus 391 t~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 391 TSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred EEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccc
Confidence 000 66777788999999999999998 799999999999999999998
Q ss_pred ccccCCCC
Q 039925 313 LSASLPPL 320 (549)
Q Consensus 313 l~~~~p~~ 320 (549)
|.. +|..
T Consensus 470 Fr~-lP~~ 476 (565)
T KOG0472|consen 470 FRM-LPEC 476 (565)
T ss_pred ccc-chHH
Confidence 873 4443
|
|
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-22 Score=200.89 Aligned_cols=142 Identities=31% Similarity=0.467 Sum_probs=117.6
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce-----------------------------------eEEEeccccCCCc-e
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------AGYSEGTDFKGID-F 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------~g~~~~~~~~~~~-~ 435 (549)
.||++|+..++||+|+||.||+|.+.++.. +|||.+ .+ .
T Consensus 72 ~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e-----~~~~ 146 (361)
T KOG1187|consen 72 KATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYCLE-----GGEH 146 (361)
T ss_pred HHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEEec-----CCce
Confidence 799999999999999999999999987532 799998 66 5
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh-------------------------------
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR------------------------------- 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH------------------------------- 484 (549)
.+||||||++|+|.++|+... .. +++|.+|++||.|+|+||+|||
T Consensus 147 ~~LVYEym~nGsL~d~L~~~~---~~-~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFG 222 (361)
T KOG1187|consen 147 RLLVYEYMPNGSLEDHLHGKK---GE-PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFG 222 (361)
T ss_pred EEEEEEccCCCCHHHHhCCCC---CC-CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCcc
Confidence 999999999999999999765 12 8999999999999999999999
Q ss_pred -------------------------------------------------------cc---------------cc-CCcce
Q 039925 485 -------------------------------------------------------VK---------------MA-LPEKV 493 (549)
Q Consensus 485 -------------------------------------------------------~~---------------~~-~~~~~ 493 (549)
.. .. ....+
T Consensus 223 La~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~ 302 (361)
T KOG1187|consen 223 LAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKL 302 (361)
T ss_pred CcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcch
Confidence 00 00 00135
Q ss_pred eeeccCccc-chHH--HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhh
Q 039925 494 MEIVESSLL-LEIE--DCLVSVLTIGILCSVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 494 ~~~~~~~~~-~~~~--~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
.+++|+.+. .... +++.++.++|.+|++.+|.+||+|.||++.|+.+..
T Consensus 303 ~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~ 354 (361)
T KOG1187|consen 303 REIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGILS 354 (361)
T ss_pred hheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhcc
Confidence 677777765 3322 688899999999999999999999999999976653
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-24 Score=203.96 Aligned_cols=249 Identities=27% Similarity=0.346 Sum_probs=176.1
Q ss_pred ecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccC
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIG 127 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~ 127 (549)
.+-+.+.++..|.+|++.+|++. .+|.+++.+..++.|+.++|++. .+|+.+..+.++ ..|+.++|.+. .+|+.++
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l-~~l~~s~n~~~-el~~~i~ 134 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISL-VKLDCSSNELK-ELPDSIG 134 (565)
T ss_pred hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhh-hhhhcccccee-ecCchHH
Confidence 34556778888888888888888 78888888888888888888888 788888888888 88888888887 5677788
Q ss_pred CCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcE
Q 039925 128 NPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRN 206 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~ 206 (549)
.+..|+.++..+|+++ .+|+.+.++.+|..|++.+|++....|..+. ++ |++||...|-+. .+|+.++ .+.+|..
T Consensus 135 ~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg-~l~~L~~ 210 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELG-GLESLEL 210 (565)
T ss_pred HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhc-chhhhHH
Confidence 8888888888888888 7788888888888888888888855555555 77 888888888887 7888887 6666666
Q ss_pred eeecc-cccccccccCcccccEEEccccccccccChhh-hhccccCccEEEcCCCcccccCCCcCccccCCccccCeeec
Q 039925 207 YYILL-LAQKLYWSDVSTTATIIAMGGNQISGTITLGI-KKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLAL 284 (549)
Q Consensus 207 L~l~~-~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~L 284 (549)
|++.. .+..+..+..+..|..|.++.|++. .+|... ..+ +++..|||.+|+++ ++|..+.-+.+|++||+
T Consensus 211 LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L--~~l~vLDLRdNklk-----e~Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 211 LYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHL--NSLLVLDLRDNKLK-----EVPDEICLLRSLERLDL 282 (565)
T ss_pred HHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhccc--ccceeeeccccccc-----cCchHHHHhhhhhhhcc
Confidence 55554 3444444444445555666666555 233332 345 55566666666655 22455555555666666
Q ss_pred cCccccccCCccccCCCCCCEEEccCCccc
Q 039925 285 DNNKLQGNLPSSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 285 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 314 (549)
|+|.|+ .+|.+++++ .|+.|-+.+|.+.
T Consensus 283 SNN~is-~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 283 SNNDIS-SLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred cCCccc-cCCcccccc-eeeehhhcCCchH
Confidence 666665 455555555 5666666665554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=203.17 Aligned_cols=294 Identities=20% Similarity=0.262 Sum_probs=188.9
Q ss_pred hhHHHHHHHHhhcCCCC---CCCCCCCCCCCCCCCCc----------------ceeCCCC---CceEeecC---------
Q 039925 2 TDHLALLAIKSLLHDRR---GVTSSWSNSIDLCQWRG----------------VTCTHQH---QRINKCLT--------- 50 (549)
Q Consensus 2 ~~~~~l~~~~~~~~~~~---~~~~~w~~~~~~c~w~g----------------v~c~~~~---~~v~g~lp--------- 50 (549)
+|...++++++.|+.|. ....+|+..++||.-.. |.|.+.. .+++|...
T Consensus 63 ~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g~~~~~~~~~~~~ 142 (754)
T PRK15370 63 EEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTESEQASSASGSKD 142 (754)
T ss_pred HHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCCCcccccccccccccccCCCCCC
Confidence 35677889999998774 23345999999996544 6675431 12221110
Q ss_pred ------------------------ccc-----cCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCccc
Q 039925 51 ------------------------PHV-----GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANL 101 (549)
Q Consensus 51 ------------------------~~~-----~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 101 (549)
.++ +-..+...|+++++.++ .+|..+. ++|+.|+|++|+|+ .+|..+
T Consensus 143 ~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l 218 (754)
T PRK15370 143 AVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENL 218 (754)
T ss_pred hhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhh
Confidence 000 11245678888888888 6776553 57888888888888 677665
Q ss_pred ccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccccce
Q 039925 102 SHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNISLKW 181 (549)
Q Consensus 102 ~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~L~~ 181 (549)
. .+| +.|++++|+++ .+|..+. .+|+.|+|++|.+. .+|..+. .+|+.|++++|++. .+|..+.. .|+.
T Consensus 219 ~--~nL-~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~~-sL~~ 287 (754)
T PRK15370 219 Q--GNI-KTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLPE-ELRY 287 (754)
T ss_pred c--cCC-CEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccCC-CCcE
Confidence 4 477 88888888887 4455442 47888888888887 6776664 47888888888887 45654431 2888
Q ss_pred eeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcc
Q 039925 182 NFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKL 261 (549)
Q Consensus 182 L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l 261 (549)
|++++|+++ .+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.+
T Consensus 288 L~Ls~N~Lt-~LP~~lp------------------------~sL~~L~Ls~N~Lt~-LP~~l~----~sL~~L~Ls~N~L 337 (754)
T PRK15370 288 LSVYDNSIR-TLPAHLP------------------------SGITHLNVQSNSLTA-LPETLP----PGLKTLEAGENAL 337 (754)
T ss_pred EECCCCccc-cCcccch------------------------hhHHHHHhcCCcccc-CCcccc----ccceeccccCCcc
Confidence 888888887 4554332 256667777777763 343321 5677777777777
Q ss_pred cccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC--------CCCCCCCcccCCc
Q 039925 262 SGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL--------NSQHNHSFSCPGF 333 (549)
Q Consensus 262 ~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--------~ls~N~~~~ip~~ 333 (549)
++ +| ..+ .++|+.|++++|+++ .+|..+. ++|+.|+|++|+++. +|.. ++++|++..+|..
T Consensus 338 t~-LP----~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~~sL~~LdLs~N~L~~LP~s 406 (754)
T PRK15370 338 TS-LP----ASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLPAALQIMQASRNNLVRLPES 406 (754)
T ss_pred cc-CC----hhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHHHHHHHHhhccCCcccCchh
Confidence 63 43 222 256777777777776 4665543 577777777777774 4433 6777777777765
Q ss_pred cccc--c--c-ceeeecCCCCCC
Q 039925 334 EFSV--I--K-LEFQIPGNKKLC 351 (549)
Q Consensus 334 ~~~~--l--~-l~~~~~gn~~~c 351 (549)
+... . . ..+.+.+||...
T Consensus 407 l~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 407 LPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHhhcCCCccEEEeeCCCccH
Confidence 5111 0 1 126677787644
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-22 Score=189.46 Aligned_cols=291 Identities=20% Similarity=0.220 Sum_probs=205.7
Q ss_pred ceeCCCC-CceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeec
Q 039925 36 VTCTHQH-QRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFIC 114 (549)
Q Consensus 36 v~c~~~~-~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls 114 (549)
|.|+.++ ..|...+|+ .-..++|..|.|+...|.+|+.+++|+.||||+|.|+.+-|++|.++.++.+.++.+
T Consensus 51 VdCr~~GL~eVP~~LP~------~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPP------ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred EEccCCCcccCcccCCC------cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence 6675432 223344444 456799999999955566999999999999999999988899999999995556666
Q ss_pred ccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCccc-
Q 039925 115 ETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGN- 192 (549)
Q Consensus 115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~- 192 (549)
+|+|+...-+.|+++.+|+.|.+.-|++.-...+.|..+++|..|.+.+|.+....-..|..+. ++.+.+..|.+...
T Consensus 125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence 6999988788999999999999999999977788999999999999999999855555888998 99999998884311
Q ss_pred -----------CchhhhhcCCCCcEeeecc-cccccccccCcccccEE--Ec-cccccccccC-hhhhhccccCccEEEc
Q 039925 193 -----------LPLEIGVTLPKGRNYYILL-LAQKLYWSDVSTTATII--AM-GGNQISGTIT-LGIKKLIFVNLYALTM 256 (549)
Q Consensus 193 -----------~p~~~~~~l~~L~~L~l~~-~~~~l~~l~~~~~L~~L--~l-~~n~l~~~~~-~~~~~l~~~~L~~L~L 256 (549)
.|.+++ ...-.....+.+ .+.....-.+...++.+ .+ +.....+.-| ..|..+ ++|+.|+|
T Consensus 205 nL~wla~~~a~~~iets-garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L--~~L~~lnl 281 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETS-GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL--PNLRKLNL 281 (498)
T ss_pred ccchhhhHHhhchhhcc-cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc--ccceEecc
Confidence 111111 011000000000 00000000000011111 11 1121222333 468888 99999999
Q ss_pred CCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCCCCCCCCCcccCCcccc
Q 039925 257 VKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPLNSQHNHSFSCPGFEFS 336 (549)
Q Consensus 257 ~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ls~N~~~~ip~~~~~ 336 (549)
++|++++.- +.+|..+.++++|.|..|+|...-...|.++..|+.|+|++|+|+...|-. |.
T Consensus 282 snN~i~~i~----~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a--------------F~ 343 (498)
T KOG4237|consen 282 SNNKITRIE----DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA--------------FQ 343 (498)
T ss_pred CCCccchhh----hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc--------------cc
Confidence 999999554 578999999999999999998666678999999999999999999755532 22
Q ss_pred cc-cc-eeeecCCCCCCCC
Q 039925 337 VI-KL-EFQIPGNKKLCGG 353 (549)
Q Consensus 337 ~l-~l-~~~~~gn~~~c~~ 353 (549)
.+ .+ ++++.+||+.|..
T Consensus 344 ~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred ccceeeeeehccCcccCcc
Confidence 11 11 1678899999953
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-19 Score=205.65 Aligned_cols=80 Identities=21% Similarity=0.212 Sum_probs=39.7
Q ss_pred CccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC-------CC
Q 039925 250 NLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL-------NS 322 (549)
Q Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-------~l 322 (549)
+|+.|+|++|...+.+ |.+++++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.. ++
T Consensus 779 sL~~L~Ls~n~~l~~l----P~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~L 853 (1153)
T PLN03210 779 SLTRLFLSDIPSLVEL----PSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNL 853 (1153)
T ss_pred cchheeCCCCCCcccc----ChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeEC
Confidence 4555555555443333 4455555566666665553333455443 4555555555555433333321 55
Q ss_pred CCCCCcccCCcc
Q 039925 323 QHNHSFSCPGFE 334 (549)
Q Consensus 323 s~N~~~~ip~~~ 334 (549)
++|.+..+|..+
T Consensus 854 s~n~i~~iP~si 865 (1153)
T PLN03210 854 SRTGIEEVPWWI 865 (1153)
T ss_pred CCCCCccChHHH
Confidence 555555555544
|
syringae 6; Provisional |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-22 Score=208.23 Aligned_cols=288 Identities=23% Similarity=0.282 Sum_probs=179.1
Q ss_pred ecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCcc-------------------
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLL------------------- 108 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~------------------- 108 (549)
.+|.+..++.+|++|.|.+|.+. .+|.++..+++|++|++++|++. .+|..+..+..+.
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik 159 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIK 159 (1081)
T ss_pred hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccch
Confidence 45666677777777777777666 67777777777777777777776 4553332222110
Q ss_pred --------------------ce-eeecccccccccccc---------------------------------------cCC
Q 039925 109 --------------------TK-LFICETHLSGQLLDF---------------------------------------IGN 128 (549)
Q Consensus 109 --------------------~~-L~Ls~n~l~~~~~~~---------------------------------------~~~ 128 (549)
++ |+|.+|.+....-.. -.-
T Consensus 160 ~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~ 239 (1081)
T KOG0618|consen 160 KLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPV 239 (1081)
T ss_pred hhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccc
Confidence 22 444444433100000 001
Q ss_pred CCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEe
Q 039925 129 PSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNY 207 (549)
Q Consensus 129 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L 207 (549)
-.+|+++++++|+++ .+|+++..+.+|+.|+..+|++. .+|..+...+ |+.|.+..|.+. .+|.... .+++|++|
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le-~~~sL~tL 315 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLE-GLKSLRTL 315 (1081)
T ss_pred cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccc-ccceeeee
Confidence 235666677777776 67788888888999988888885 5555555555 666666666666 5555544 56666666
Q ss_pred eecc-cc-------------------------cccccc--cCcccccEEEccccccccccChhhhhccccCccEEEcCCC
Q 039925 208 YILL-LA-------------------------QKLYWS--DVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKN 259 (549)
Q Consensus 208 ~l~~-~~-------------------------~~l~~l--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n 259 (549)
++.. ++ ..+... ...+.|+.|.+.+|.+++..-..+.++ ++|+.|+|++|
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~--~hLKVLhLsyN 393 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF--KHLKVLHLSYN 393 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc--cceeeeeeccc
Confidence 6654 11 111100 122467778888888887666667777 88888888888
Q ss_pred cccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC---------CCCCCCCcc-
Q 039925 260 KLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL---------NSQHNHSFS- 329 (549)
Q Consensus 260 ~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---------~ls~N~~~~- 329 (549)
++. .+| ...+.++..|++|+||+|+++ .+|..+..++.|++|...+|++.. .|.. |+|.|++..
T Consensus 394 rL~-~fp---as~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fPe~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 394 RLN-SFP---ASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FPELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred ccc-cCC---HHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-chhhhhcCcceEEecccchhhhh
Confidence 886 554 355677888888888888888 677777777777777777777763 4433 777777432
Q ss_pred -cCCccc-ccccceeeecCCCCC
Q 039925 330 -CPGFEF-SVIKLEFQIPGNKKL 350 (549)
Q Consensus 330 -ip~~~~-~~l~l~~~~~gn~~~ 350 (549)
+|...- ..|+. +++.||+++
T Consensus 468 ~l~~~~p~p~Lky-LdlSGN~~l 489 (1081)
T KOG0618|consen 468 TLPEALPSPNLKY-LDLSGNTRL 489 (1081)
T ss_pred hhhhhCCCcccce-eeccCCccc
Confidence 333331 33333 667777753
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-19 Score=191.63 Aligned_cols=247 Identities=21% Similarity=0.272 Sum_probs=154.8
Q ss_pred CCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEe
Q 039925 58 YLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIF 137 (549)
Q Consensus 58 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 137 (549)
.-..|++++|.++ .+|..+. ++|+.|++++|+++ .+|.. .++| ++|++++|+|+. +|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~L-k~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPEL-RTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCC-cEEEecCCccCc-ccCc---ccccceeec
Confidence 3456667777666 5666554 35667777777666 45542 3556 667777776663 3322 356666677
Q ss_pred ecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecc-cccc
Q 039925 138 KENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILL-LAQK 215 (549)
Q Consensus 138 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~-~~~~ 215 (549)
++|.++ .+|.. .++|+.|++++|+++ .+|.. .+ |+.|++++|+++ .+|.. ..+|+.|++++ .+..
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS 336 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCCC----cccccccccccCcccc
Confidence 766666 44432 245666666666665 33331 23 666677666666 34431 12345555554 2222
Q ss_pred cccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCc
Q 039925 216 LYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPS 295 (549)
Q Consensus 216 l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~ 295 (549)
+. ..+.+|+.|+|++|+++. +|.. . .+|+.|++++|.++ .+| .. ..+|+.|++++|+++ .+|.
T Consensus 337 LP--~lp~~Lq~LdLS~N~Ls~-LP~l---p--~~L~~L~Ls~N~L~-~LP----~l---~~~L~~LdLs~N~Lt-~LP~ 399 (788)
T PRK15387 337 LP--TLPSGLQELSVSDNQLAS-LPTL---P--SELYKLWAYNNRLT-SLP----AL---PSGLKELIVSGNRLT-SLPV 399 (788)
T ss_pred cc--ccccccceEecCCCccCC-CCCC---C--cccceehhhccccc-cCc----cc---ccccceEEecCCccc-CCCC
Confidence 22 123478899999999885 4432 2 67888899999887 353 22 256889999999988 4665
Q ss_pred cccCCCCCCEEEccCCcccccCCCC-------CCCCCCCcccCCcc--cccccceeeecCCCCCC
Q 039925 296 SLGYYQNLMELSVSRNKLSASLPPL-------NSQHNHSFSCPGFE--FSVIKLEFQIPGNKKLC 351 (549)
Q Consensus 296 ~l~~l~~L~~L~Ls~N~l~~~~p~~-------~ls~N~~~~ip~~~--~~~l~l~~~~~gn~~~c 351 (549)
. .++|+.|++++|++++ +|.. ++++|++.++|..+ +..+.. +++.+|+.-.
T Consensus 400 l---~s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~-LdLs~N~Ls~ 459 (788)
T PRK15387 400 L---PSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETT-VNLEGNPLSE 459 (788)
T ss_pred c---ccCCCEEEccCCcCCC-CCcchhhhhhhhhccCcccccChHHhhccCCCe-EECCCCCCCc
Confidence 3 3678899999999885 5643 88899999999876 344433 7788887543
|
|
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-19 Score=180.51 Aligned_cols=141 Identities=23% Similarity=0.331 Sum_probs=110.7
Q ss_pred cccCcCCCccccCceecEEEEEeCCC-ce---------------------------------eEEEeccccCCCceEEEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEK-WT---------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~---------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
.+.+...+.||+|-||.||.|.|.+. .+ +|+|.. +++++||
T Consensus 205 r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~-----~~piyIV 279 (468)
T KOG0197|consen 205 REELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTK-----QEPIYIV 279 (468)
T ss_pred HHHHHHHHHhcCCccceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEec-----CCceEEE
Confidence 34455667899999999999999765 22 789988 7789999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh-----------------------------------
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR----------------------------------- 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH----------------------------------- 484 (549)
||||++|+|.++|+... +..+.-.+.+.+|.|||+||+||+
T Consensus 280 tE~m~~GsLl~yLr~~~----~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d 355 (468)
T KOG0197|consen 280 TEYMPKGSLLDYLRTRE----GGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIGD 355 (468)
T ss_pred EEecccCcHHHHhhhcC----CCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccccccccCC
Confidence 99999999999999733 467889999999999999999998
Q ss_pred -------------------------------------------c--cccCCc----ceeeeccCcc-cchHHHHHHHHHH
Q 039925 485 -------------------------------------------V--KMALPE----KVMEIVESSL-LLEIEDCLVSVLT 514 (549)
Q Consensus 485 -------------------------------------------~--~~~~~~----~~~~~~~~~~-~~~~~~~~~~l~~ 514 (549)
. ...+++ .+.+.++.+. .+.|+.||.++++
T Consensus 356 ~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~GyRlp~P~~CP~~vY~ 435 (468)
T KOG0197|consen 356 DEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGYRLPRPEGCPDEVYE 435 (468)
T ss_pred CceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccCcCCCCCCCCHHHHH
Confidence 0 001111 1222223322 3456889999999
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHhhhh
Q 039925 515 IGILCSVESPSERMEKPYIVSKLSHAREN 543 (549)
Q Consensus 515 l~~~C~~~~P~~RP~~~~v~~~L~~~~~~ 543 (549)
+|..||+.+|++||||..+...++.+...
T Consensus 436 lM~~CW~~~P~~RPtF~~L~~~l~~~~~~ 464 (468)
T KOG0197|consen 436 LMKSCWHEDPEDRPTFETLREVLEDFFTS 464 (468)
T ss_pred HHHHHhhCCcccCCCHHHHHHHHHHhhhc
Confidence 99999999999999999999988887653
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-18 Score=196.94 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=56.8
Q ss_pred CCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEE
Q 039925 56 FGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVM 135 (549)
Q Consensus 56 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L 135 (549)
..+|+.|++++|.+. .+|..+..+++|+.|+|++|...+.+|. +..+++| +.|+|++|.....+|..++++++|+.|
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~L-e~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNL-ETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcc-cEEEecCCCCccccchhhhccCCCCEE
Confidence 345555555555555 4555555556666666655543334443 4555555 666666555444555555566666666
Q ss_pred EeecceeeeeCCccccCCCCCCEEecccCc
Q 039925 136 IFKENSLEGKFPNTLSNLRSLFYDNINRNE 165 (549)
Q Consensus 136 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 165 (549)
++++|...+.+|..+ ++++|++|++++|.
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 665543333444433 45555555555543
|
syringae 6; Provisional |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.6e-19 Score=189.47 Aligned_cols=231 Identities=21% Similarity=0.316 Sum_probs=177.5
Q ss_pred ecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccC
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIG 127 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~ 127 (549)
.+|..+. ++|+.|+|++|+|+ .+|..+. ++|++|++++|+++ .+|..+. .+| +.|+|++|++. .+|..+.
T Consensus 192 sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L-~~L~Ls~N~L~-~LP~~l~ 261 (754)
T PRK15370 192 TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTI-QEMELSINRIT-ELPERLP 261 (754)
T ss_pred cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccc-cEEECcCCccC-cCChhHh
Confidence 5666553 47999999999999 7887664 58999999999999 6887664 367 99999999998 5666553
Q ss_pred CCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcE
Q 039925 128 NPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRN 206 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~ 206 (549)
.+|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. + |+.|++++|.++ .+|..+. ++|+.
T Consensus 262 --s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~ 329 (754)
T PRK15370 262 --SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETLP---PGLKT 329 (754)
T ss_pred --CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcccc---cccee
Confidence 58999999999999 6787664 589999999999984 554432 3 999999999998 5776543 57888
Q ss_pred eeecc-cccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeecc
Q 039925 207 YYILL-LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALD 285 (549)
Q Consensus 207 L~l~~-~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls 285 (549)
|++++ .+..+.. .++++|+.|++++|+++ .+|..+. ++|+.|+|++|.++ .+| ..+. .+|+.|+++
T Consensus 330 L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~L~-~LP~~lp----~~L~~LdLs~N~Lt-~LP----~~l~--~sL~~LdLs 396 (754)
T PRK15370 330 LEAGENALTSLPA-SLPPELQVLDVSKNQIT-VLPETLP----PTITTLDVSRNALT-NLP----ENLP--AALQIMQAS 396 (754)
T ss_pred ccccCCccccCCh-hhcCcccEEECCCCCCC-cCChhhc----CCcCEEECCCCcCC-CCC----HhHH--HHHHHHhhc
Confidence 88877 3333321 23468999999999987 4565442 68999999999988 454 3332 368899999
Q ss_pred CccccccCCccc----cCCCCCCEEEccCCccc
Q 039925 286 NNKLQGNLPSSL----GYYQNLMELSVSRNKLS 314 (549)
Q Consensus 286 ~N~l~~~~p~~l----~~l~~L~~L~Ls~N~l~ 314 (549)
+|++. .+|..+ ..++.+..|++.+|.++
T Consensus 397 ~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 397 RNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 99998 566544 34588899999999986
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-20 Score=194.34 Aligned_cols=238 Identities=23% Similarity=0.221 Sum_probs=149.8
Q ss_pred CCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEE
Q 039925 56 FGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVM 135 (549)
Q Consensus 56 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L 135 (549)
.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.|. .+|.+..++.+| ++|.|.+|.+. .+|..+..+.+|++|
T Consensus 44 ~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l-~~lnL~~n~l~-~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNL-QYLNLKNNRLQ-SLPASISELKNLQYL 119 (1081)
T ss_pred eeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcc-hhheeccchhh-cCchhHHhhhccccc
Confidence 344888888888888 78888888888888888888888 788888888888 88888888877 678888888888888
Q ss_pred EeecceeeeeCCccccCCCCCCEEecccC-------------------cceecccccccccccce-eeCCCCcCcccCch
Q 039925 136 IFKENSLEGKFPNTLSNLRSLFYDNINRN-------------------EFSGLIPSFIFNISLKW-NFLPENSFTGNLPL 195 (549)
Q Consensus 136 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-------------------~l~~~~p~~~~~l~L~~-L~l~~n~l~~~~p~ 195 (549)
++++|.+. .+|..+..++.+..+..++| .+.+.++..+.. +++ |+|++|.+. .+..
T Consensus 120 dlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~--l~~~ldLr~N~~~-~~dl 195 (1081)
T KOG0618|consen 120 DLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYN--LTHQLDLRYNEME-VLDL 195 (1081)
T ss_pred ccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhh--hheeeecccchhh-hhhh
Confidence 88888887 77777777766666666666 222222221111 333 666666654 2211
Q ss_pred hhhhcCCCCcEeeecc-----------c----------ccccccccCcccccEEEccccccccccChhhhhccccCccEE
Q 039925 196 EIGVTLPKGRNYYILL-----------L----------AQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYAL 254 (549)
Q Consensus 196 ~~~~~l~~L~~L~l~~-----------~----------~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L 254 (549)
. .+++|+.++... . +..+..-..+.+|+++++++|++++ +|.++..+ .+|+.|
T Consensus 196 s---~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~--~nle~l 269 (1081)
T KOG0618|consen 196 S---NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGAC--ANLEAL 269 (1081)
T ss_pred h---hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhc--ccceEe
Confidence 1 333333333322 1 1111111334578889999999884 56888888 899999
Q ss_pred EcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcc
Q 039925 255 TMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKL 313 (549)
Q Consensus 255 ~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 313 (549)
+..+|+++ .+| ..+..+++|+.|++.+|.+. -+|+....++.|+.|+|..|+|
T Consensus 270 ~~n~N~l~-~lp----~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 270 NANHNRLV-ALP----LRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred cccchhHH-hhH----HHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccc
Confidence 99999886 443 33333333333333333333 2333333334444444444433
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-18 Score=184.20 Aligned_cols=228 Identities=20% Similarity=0.244 Sum_probs=139.9
Q ss_pred ecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccC
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIG 127 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~ 127 (549)
.+|+.+. ++|+.|++++|+++ .+|.. .++|++|+|++|+|+ .+|.. .++| +.|++++|.++. +|..
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL-~~L~Ls~N~L~~-Lp~l-- 280 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGL-LELSIFSNPLTH-LPAL-- 280 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---cccc-ceeeccCCchhh-hhhc--
Confidence 5677665 37888888888888 56642 477888888888887 56643 2455 666666666552 2221
Q ss_pred CCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCccee-------------------cccccccccc-cceeeCCCC
Q 039925 128 NPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSG-------------------LIPSFIFNIS-LKWNFLPEN 187 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-------------------~~p~~~~~l~-L~~L~l~~n 187 (549)
..+|+.|++++|+++ .+|.. +++|+.|++++|++.+ .+|.. .. |+.|++++|
T Consensus 281 -p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N 352 (788)
T PRK15387 281 -PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDN 352 (788)
T ss_pred -hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCCCcccccccccccCcccccccc---ccccceEecCCC
Confidence 133444555555544 23321 2344455555544442 12221 12 667777777
Q ss_pred cCcccCchhhhhcCCCCcEeeecc-cccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCC
Q 039925 188 SFTGNLPLEIGVTLPKGRNYYILL-LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIP 266 (549)
Q Consensus 188 ~l~~~~p~~~~~~l~~L~~L~l~~-~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p 266 (549)
+++ .+|.. .++|+.|++++ .+..+.. ...+|+.|++++|.++. +|.. . ++|+.|++++|.++ .+|
T Consensus 353 ~Ls-~LP~l----p~~L~~L~Ls~N~L~~LP~--l~~~L~~LdLs~N~Lt~-LP~l---~--s~L~~LdLS~N~Ls-sIP 418 (788)
T PRK15387 353 QLA-SLPTL----PSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTS-LPVL---P--SELKELMVSGNRLT-SLP 418 (788)
T ss_pred ccC-CCCCC----CcccceehhhccccccCcc--cccccceEEecCCcccC-CCCc---c--cCCCEEEccCCcCC-CCC
Confidence 776 45532 23555566555 2232221 23468888888888874 4432 2 67888888888887 343
Q ss_pred CcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCC
Q 039925 267 HHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319 (549)
Q Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 319 (549)
.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|+|++..|.
T Consensus 419 ----~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 419 ----ML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ----cc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 22 246788889999888 7888888889999999999998876544
|
|
| >KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.1e-19 Score=183.14 Aligned_cols=147 Identities=23% Similarity=0.326 Sum_probs=113.4
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce------------------------------------------eEEEeccccC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT------------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------------------------~g~~~~~~~~ 431 (549)
+.+....+.||+|+||+||+|+..+... +|+|..
T Consensus 485 r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~---- 560 (774)
T KOG1026|consen 485 RSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCRE---- 560 (774)
T ss_pred hhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEcc----
Confidence 3445566779999999999998754331 799999
Q ss_pred CCceEEEEEeecCCCCcccccccCCC-------CCC-CCCCchhhhHHHHHHHHHHHHHhh-------------------
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNN-------KLK-PSSLSMIRKLSTTIDVASAIEYLR------------------- 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~-------~~~-~~~l~~~~~~~ia~~va~gl~yLH------------------- 484 (549)
.++.++|+|||..|+|.++|+.... +.. +.+++-.+.+.||.|||.||+||.
T Consensus 561 -~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~ 639 (774)
T KOG1026|consen 561 -GDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGEN 639 (774)
T ss_pred -CCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccc
Confidence 8999999999999999999985541 111 345888999999999999999995
Q ss_pred -----------------------------ccccC--------------------------------------Ccceeeec
Q 039925 485 -----------------------------VKMAL--------------------------------------PEKVMEIV 497 (549)
Q Consensus 485 -----------------------------~~~~~--------------------------------------~~~~~~~~ 497 (549)
.+++. .+.+..+-
T Consensus 640 l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~ 719 (774)
T KOG1026|consen 640 LVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIR 719 (774)
T ss_pred eEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHH
Confidence 01111 11222333
Q ss_pred cCcccchHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhhhh
Q 039925 498 ESSLLLEIEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHARENVA 545 (549)
Q Consensus 498 ~~~~~~~~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~~~ 545 (549)
+..+.+.+++||.++++||..||++.|++||+|+||..+|+......+
T Consensus 720 ~g~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~s~ 767 (774)
T KOG1026|consen 720 AGQLLSCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQASP 767 (774)
T ss_pred cCCcccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhcCc
Confidence 344455568999999999999999999999999999999998865433
|
|
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-18 Score=169.91 Aligned_cols=144 Identities=24% Similarity=0.332 Sum_probs=108.8
Q ss_pred cccCcCCCccccCceecEEEEEeCCCc-e------------------------------------eEEEeccccCCCc-e
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKW-T------------------------------------AGYSEGTDFKGID-F 435 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~------------------------------------~g~~~~~~~~~~~-~ 435 (549)
..++...+.+|+|+||+||+|.|++.. + +|+|.. +. .
T Consensus 40 ~~~l~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~-----~~~~ 114 (362)
T KOG0192|consen 40 PDELPIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTS-----PPGS 114 (362)
T ss_pred hHHhhhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC-----CCCc
Confidence 445556667999999999999998877 3 688877 44 6
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhhcc-----------------------------
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLRVK----------------------------- 486 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH~~----------------------------- 486 (549)
.++|||||++|+|+++++... ...++|..++++|.|||+||.|||..
T Consensus 115 ~~iVtEy~~~GsL~~~l~~~~----~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGl 190 (362)
T KOG0192|consen 115 LCIVTEYMPGGSLSVLLHKKR----KRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGL 190 (362)
T ss_pred eEEEEEeCCCCcHHHHHhhcc----cCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCcc
Confidence 899999999999999998731 35799999999999999999999900
Q ss_pred -------------------ccCCcceeee---cc-----------------Cccc-------------------c-hHHH
Q 039925 487 -------------------MALPEKVMEI---VE-----------------SSLL-------------------L-EIED 507 (549)
Q Consensus 487 -------------------~~~~~~~~~~---~~-----------------~~~~-------------------~-~~~~ 507 (549)
.+.|+.+.+. ++ ..++ + .+..
T Consensus 191 sr~~~~~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~ 270 (362)
T KOG0192|consen 191 SREKVISKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASAVVVGGLRPPIPKE 270 (362)
T ss_pred ceeeccccccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCcc
Confidence 1111111100 00 0000 0 0145
Q ss_pred HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhhhhc
Q 039925 508 CLVSVLTIGILCSVESPSERMEKPYIVSKLSHARENVAC 546 (549)
Q Consensus 508 ~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~~~~ 546 (549)
|+..+..++.+||+.+|+.||+|.+|+..|+.+...+..
T Consensus 271 ~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~~~~ 309 (362)
T KOG0192|consen 271 CPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMSHISS 309 (362)
T ss_pred CCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHhhcc
Confidence 888899999999999999999999999999998876543
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-19 Score=150.40 Aligned_cols=162 Identities=25% Similarity=0.427 Sum_probs=92.6
Q ss_pred CCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCE
Q 039925 79 RLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFY 158 (549)
Q Consensus 79 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 158 (549)
++.+++.|.||+|+++ .+|+.+..+.+| +.|++++|+|+ .+|..+..+++|+.|+++-|++. .+|..|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nl-evln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNL-EVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhh-hhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 3445555555555555 555555555555 55555555555 44455555555555665555555 55666666666666
Q ss_pred EecccCccee-cccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccc
Q 039925 159 DNINRNEFSG-LIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQIS 236 (549)
Q Consensus 159 L~L~~n~l~~-~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~ 236 (549)
|||..|++.. .+|..|..++ |+.|++++|.|. .+|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp------------------------------------------ 143 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILP------------------------------------------ 143 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCC------------------------------------------
Confidence 6666665542 3444455554 555555555544 333
Q ss_pred cccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccC
Q 039925 237 GTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGY 299 (549)
Q Consensus 237 ~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 299 (549)
..++++ ++|+.|.+.+|.+. .+|..++.++.|++|.+.+|+++ .+|+.+++
T Consensus 144 ----~dvg~l--t~lqil~lrdndll-----~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 144 ----PDVGKL--TNLQILSLRDNDLL-----SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred ----hhhhhh--cceeEEeeccCchh-----hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 344444 56666666666655 33566667777777777777776 55655543
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-19 Score=151.05 Aligned_cols=140 Identities=25% Similarity=0.382 Sum_probs=119.1
Q ss_pred ccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCC
Q 039925 53 VGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAI 132 (549)
Q Consensus 53 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L 132 (549)
+.++.+++.|.||+|+++ .+|..+..+.+|+.|++++|+|+ .+|..++.+++| +.|++.-|++. .+|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~kl-r~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKL-RILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhh-hheecchhhhh-cCccccCCCchh
Confidence 456777888888999888 77778888889999999999888 788888888888 89999888887 788888999999
Q ss_pred CEEEeecceeee-eCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhh
Q 039925 133 QVMIFKENSLEG-KFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIG 198 (549)
Q Consensus 133 ~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~ 198 (549)
+.|||.+|++.. .+|..|..++.|+.|+|++|.+. .+|..++.++ |+.|.+..|.+- .+|.+++
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig 170 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG 170 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH
Confidence 999998888863 57888888888888899998887 7788888888 888888888887 7888877
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-19 Score=169.73 Aligned_cols=260 Identities=16% Similarity=0.164 Sum_probs=195.4
Q ss_pred eecCc-cccCCCCCCEEEccCCcceecCCccccCCCCCCEeeccc-ccccccCC-cccccccCccceeeecccccccccc
Q 039925 47 KCLTP-HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLAN-NHFSGKIP-ANLSHCSNLLTKLFICETHLSGQLL 123 (549)
Q Consensus 47 g~lp~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p-~~l~~l~~L~~~L~Ls~n~l~~~~~ 123 (549)
..||+ +|+.+++|+.|||++|+|+.+-|+.|.++.+|..|-+-+ |+|+ .+| +.|.++..+ +.|.+.-|++.-...
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl-qrLllNan~i~Cir~ 157 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL-QRLLLNANHINCIRQ 157 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH-HHHhcChhhhcchhH
Confidence 46765 899999999999999999988899999999998887766 9999 555 568999999 999999999998888
Q ss_pred cccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcce------------ecccccccccc-cceeeCCCCcCc
Q 039925 124 DFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFS------------GLIPSFIFNIS-LKWNFLPENSFT 190 (549)
Q Consensus 124 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~------------~~~p~~~~~l~-L~~L~l~~n~l~ 190 (549)
+.|..+++|..|.+..|.+...--.+|..+..++++.+..|.+. ...|..+++.+ ..-..+.++++.
T Consensus 158 ~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~ 237 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN 237 (498)
T ss_pred HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhc
Confidence 99999999999999999998443348999999999999988742 12223333333 333333333333
Q ss_pred ccCchhhhhcCCCCcEeeecc----cccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCC
Q 039925 191 GNLPLEIGVTLPKGRNYYILL----LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIP 266 (549)
Q Consensus 191 ~~~p~~~~~~l~~L~~L~l~~----~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p 266 (549)
..-+..+...+.++..-..+. ...-...+...++|+.|+|++|+++..-+.+|.+. ..++.|.|..|++...-
T Consensus 238 q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~--a~l~eL~L~~N~l~~v~- 314 (498)
T KOG4237|consen 238 QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA--AELQELYLTRNKLEFVS- 314 (498)
T ss_pred ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch--hhhhhhhcCcchHHHHH-
Confidence 111222211111110000000 00001123445689999999999999999999999 99999999999997322
Q ss_pred CcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCccc
Q 039925 267 HHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 314 (549)
...|.++..|+.|+|.+|+|+-.-|..|..+..|..|+|-.|.+.
T Consensus 315 ---~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 315 ---SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred ---HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 456889999999999999999888999999999999999999875
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-18 Score=172.45 Aligned_cols=245 Identities=19% Similarity=0.199 Sum_probs=157.7
Q ss_pred CccccCCCCCCEEEccCCccee----cCCccccCCCCCCEeecccccccc------cCCcccccccCccceeeecccccc
Q 039925 50 TPHVGNFGYLRFINLVDNNFRG----EIPEKVGRLFRLEYLLLANNHFSG------KIPANLSHCSNLLTKLFICETHLS 119 (549)
Q Consensus 50 p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~~L~~~L~Ls~n~l~ 119 (549)
+..|..+++|+.|+++++.++. .++..+...++|++|+++++.+.+ .++..+..+++| +.|++++|.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~~ 94 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGL-QELDLSDNALG 94 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCce-eEEEccCCCCC
Confidence 3445566778899999888753 255666777888899988887762 234456677788 88999888887
Q ss_pred cccccccCCCCC---CCEEEeecceeee----eCCccccCC-CCCCEEecccCcceec----ccccccccc-cceeeCCC
Q 039925 120 GQLLDFIGNPSA---IQVMIFKENSLEG----KFPNTLSNL-RSLFYDNINRNEFSGL----IPSFIFNIS-LKWNFLPE 186 (549)
Q Consensus 120 ~~~~~~~~~l~~---L~~L~L~~n~l~~----~~p~~~~~l-~~L~~L~L~~n~l~~~----~p~~~~~l~-L~~L~l~~ 186 (549)
...+..+..+.+ |++|++++|.++. .+...+..+ ++|++|++++|.+++. ++..+..+. |++|++++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 655555555544 8999998888863 233445566 8888999988888742 334555666 88888888
Q ss_pred CcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEcccccccccc----ChhhhhccccCccEEEcCCCccc
Q 039925 187 NSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTI----TLGIKKLIFVNLYALTMVKNKLS 262 (549)
Q Consensus 187 n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~~~L~~L~L~~n~l~ 262 (549)
|.+++.....+...++. .++|+.|++++|.+++.. +..+..+ ++|++|++++|.++
T Consensus 175 n~l~~~~~~~l~~~l~~------------------~~~L~~L~L~~n~i~~~~~~~l~~~~~~~--~~L~~L~ls~n~l~ 234 (319)
T cd00116 175 NGIGDAGIRALAEGLKA------------------NCNLEVLDLNNNGLTDEGASALAETLASL--KSLEVLNLGDNNLT 234 (319)
T ss_pred CCCchHHHHHHHHHHHh------------------CCCCCEEeccCCccChHHHHHHHHHhccc--CCCCEEecCCCcCc
Confidence 88875322222211111 136777777777766432 2334445 67888888887776
Q ss_pred ccCCCcCcccc-CCccccCeeeccCccccc----cCCccccCCCCCCEEEccCCcccc
Q 039925 263 GPIPHHIASSL-GNLTLLTYLALDNNKLQG----NLPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 263 ~~~p~~l~~~l-~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
+.....+...+ ...+.|++|++++|.++. .+...+..+++|+.+++++|.++.
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 42211111111 123678888888887752 234455566778888888887763
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-18 Score=171.41 Aligned_cols=247 Identities=19% Similarity=0.184 Sum_probs=181.4
Q ss_pred ecCccccCCCCCCEEEccCCccee------cCCccccCCCCCCEeecccccccccCCcccccccC---ccceeeeccccc
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRG------EIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSN---LLTKLFICETHL 118 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~---L~~~L~Ls~n~l 118 (549)
.+++.+...+++++|+++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+.+ | ++|++++|++
T Consensus 42 ~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L-~~L~ls~~~~ 120 (319)
T cd00116 42 ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSL-QELKLNNNGL 120 (319)
T ss_pred HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcc-cEEEeeCCcc
Confidence 456677788899999999998762 34566788999999999999998666666666665 8 9999999998
Q ss_pred cc----ccccccCCC-CCCCEEEeecceeee----eCCccccCCCCCCEEecccCcceec----ccccccccc-cceeeC
Q 039925 119 SG----QLLDFIGNP-SAIQVMIFKENSLEG----KFPNTLSNLRSLFYDNINRNEFSGL----IPSFIFNIS-LKWNFL 184 (549)
Q Consensus 119 ~~----~~~~~~~~l-~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~-L~~L~l 184 (549)
.+ .+...+..+ ++|+.|++++|.+++ .++..+..+++|++|++++|.+.+. ++..+...+ |++|++
T Consensus 121 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L 200 (319)
T cd00116 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200 (319)
T ss_pred chHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEec
Confidence 74 234456667 899999999999983 2445677788999999999998842 334455566 999999
Q ss_pred CCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhcc---ccCccEEEcCCCcc
Q 039925 185 PENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLI---FVNLYALTMVKNKL 261 (549)
Q Consensus 185 ~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~---~~~L~~L~L~~n~l 261 (549)
++|.+++.....+...++ ..++|++|++++|.+++.....+.... .+.|++|++++|.+
T Consensus 201 ~~n~i~~~~~~~l~~~~~------------------~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 201 NNNGLTDEGASALAETLA------------------SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred cCCccChHHHHHHHHHhc------------------ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 999987544443332221 224789999999988863333332210 16899999999998
Q ss_pred cccCCCcCccccCCccccCeeeccCcccccc----CCccccCC-CCCCEEEccCCcc
Q 039925 262 SGPIPHHIASSLGNLTLLTYLALDNNKLQGN----LPSSLGYY-QNLMELSVSRNKL 313 (549)
Q Consensus 262 ~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l 313 (549)
++.....+...+..+++|+++++++|.++.. +...+... +.|+.+++.+|.+
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 7322112345566678999999999999954 44455555 7899999988864
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-17 Score=177.61 Aligned_cols=147 Identities=23% Similarity=0.396 Sum_probs=112.6
Q ss_pred cccCcCCCccccCceecEEEEEeCC--Cc-----e-----------------------------------eEEEeccccC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE--KW-----T-----------------------------------AGYSEGTDFK 431 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~--~~-----~-----------------------------------~g~~~~~~~~ 431 (549)
..+....+.||+|+||.||+|++.+ +. + .|+|..
T Consensus 691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~---- 766 (1025)
T KOG1095|consen 691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLD---- 766 (1025)
T ss_pred hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecC----
Confidence 4455677889999999999999743 32 1 688988
Q ss_pred CCceEEEEEeecCCCCcccccccCC-CCCCCCCCchhhhHHHHHHHHHHHHHhh--------------------------
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSN-NKLKPSSLSMIRKLSTTIDVASAIEYLR-------------------------- 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~-~~~~~~~l~~~~~~~ia~~va~gl~yLH-------------------------- 484 (549)
....++++|||++|+|..+|++.. .+.....++....+.+|.|||+||.||+
T Consensus 767 -~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaD 845 (1025)
T KOG1095|consen 767 -SGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIAD 845 (1025)
T ss_pred -CCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcc
Confidence 788999999999999999999764 2223467888999999999999999998
Q ss_pred ----------------------cc---------------------------------ccCCc-----ceeeeccCcccch
Q 039925 485 ----------------------VK---------------------------------MALPE-----KVMEIVESSLLLE 504 (549)
Q Consensus 485 ----------------------~~---------------------------------~~~~~-----~~~~~~~~~~~~~ 504 (549)
++ ..+++ .+..++..+..+.
T Consensus 846 FGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~ggRL~~ 925 (1025)
T KOG1095|consen 846 FGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGGRLDP 925 (1025)
T ss_pred cchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCCccCC
Confidence 11 11111 0111222333344
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhhhh
Q 039925 505 IEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHARENVA 545 (549)
Q Consensus 505 ~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~~~ 545 (549)
+..|+.+++++|..||+.+|++||+|..|++.+..+.....
T Consensus 926 P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~~~~ 966 (1025)
T KOG1095|consen 926 PSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAISNAAL 966 (1025)
T ss_pred CCCCChHHHHHHHHHccCChhhCccHHHHHhhhhhhhhhhc
Confidence 57899999999999999999999999999999988875543
|
|
| >KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-17 Score=169.65 Aligned_cols=135 Identities=23% Similarity=0.329 Sum_probs=107.0
Q ss_pred cCCCccccCceecEEEEEeCCCc-e---------------------------------------eEEEeccccCCCceEE
Q 039925 398 SSSNMIGQGSFGSVYKGILGEKW-T---------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 398 ~~~~~lG~G~~g~Vy~~~~~~~~-~---------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
..+++||.|.||.||+|+++--. . .|+-.. ..+.+
T Consensus 632 ~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTk-----s~PvM 706 (996)
T KOG0196|consen 632 KIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTK-----SKPVM 706 (996)
T ss_pred EEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEec-----CceeE
Confidence 47889999999999999985321 1 344444 67889
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh---------------------------------
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR--------------------------------- 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH--------------------------------- 484 (549)
+|+|||+||+|+.+|+... +.|+|-+...+.+|||.||.||.
T Consensus 707 IiTEyMENGsLDsFLR~~D-----GqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSRvl 781 (996)
T KOG0196|consen 707 IITEYMENGSLDSFLRQND-----GQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSRVL 781 (996)
T ss_pred EEhhhhhCCcHHHHHhhcC-----CceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEeccccceeec
Confidence 9999999999999999765 45999999999999999999996
Q ss_pred ------------------------------------------------------ccccCCcceeeeccCcccchHHHHHH
Q 039925 485 ------------------------------------------------------VKMALPEKVMEIVESSLLLEIEDCLV 510 (549)
Q Consensus 485 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (549)
+++...+.+..+.+....+.+.+||.
T Consensus 782 edd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVIkaIe~gyRLPpPmDCP~ 861 (996)
T KOG0196|consen 782 EDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEQGYRLPPPMDCPA 861 (996)
T ss_pred ccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchHHHHHHHHhccCCCCCCCCcH
Confidence 11111222333333333456689999
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHhhh
Q 039925 511 SVLTIGILCSVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 511 ~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
.+++||+.||++|..+||+|.||+..|.++..
T Consensus 862 aL~qLMldCWqkdR~~RP~F~qiV~~lDklIr 893 (996)
T KOG0196|consen 862 ALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIR 893 (996)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999853
|
|
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-17 Score=161.74 Aligned_cols=141 Identities=20% Similarity=0.259 Sum_probs=109.1
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce-----------------------------------eEEEeccccCCCceEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
..+++.....||+|+||+||+|.|.+... .|+|.. + ..+
T Consensus 390 p~~ev~l~~rIGsGsFGtV~Rg~whGdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~-----p-~~A 463 (678)
T KOG0193|consen 390 PPEEVLLGERIGSGSFGTVYRGRWHGDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMN-----P-PLA 463 (678)
T ss_pred CHHHhhccceeccccccceeecccccceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcC-----C-cee
Confidence 34456678889999999999999987653 688886 4 459
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh---------------------------------
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR--------------------------------- 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH--------------------------------- 484 (549)
+|+.||++-+||.+||..+ ..|+..+.+.||.|||+||.|||
T Consensus 464 IiTqwCeGsSLY~hlHv~e-----tkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk 538 (678)
T KOG0193|consen 464 IITQWCEGSSLYTHLHVQE-----TKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVK 538 (678)
T ss_pred eeehhccCchhhhhccchh-----hhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEecccceeee
Confidence 9999999999999999754 67999999999999999999999
Q ss_pred --------------------------------------------------cc----ccCCcceeeeccCc-----ccchH
Q 039925 485 --------------------------------------------------VK----MALPEKVMEIVESS-----LLLEI 505 (549)
Q Consensus 485 --------------------------------------------------~~----~~~~~~~~~~~~~~-----~~~~~ 505 (549)
.. ...++.+.=++.++ +....
T Consensus 539 ~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG~l~pd~s~~~ 618 (678)
T KOG0193|consen 539 TRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRGYLMPDLSKIR 618 (678)
T ss_pred eeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEecccccCccchhhh
Confidence 00 00011111111111 11123
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhhh
Q 039925 506 EDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHARENV 544 (549)
Q Consensus 506 ~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~~ 544 (549)
..|+.++.+|...||..++++||.|.+|+..|+.+....
T Consensus 619 s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~~~ 657 (678)
T KOG0193|consen 619 SNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLPSL 657 (678)
T ss_pred ccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhhcc
Confidence 789999999999999999999999999999998887643
|
|
| >KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-17 Score=161.93 Aligned_cols=140 Identities=21% Similarity=0.296 Sum_probs=110.9
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce-----------------------------------eEEEeccccCCCceEEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..+....+.||-|-||.||.|+|+.... +|+|.. +...||
T Consensus 266 RtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~-----EpPFYI 340 (1157)
T KOG4278|consen 266 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTH-----EPPFYI 340 (1157)
T ss_pred chheeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhcc-----CCCeEE
Confidence 4466778899999999999999976443 799998 889999
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh----------------------------------
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR---------------------------------- 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH---------------------------------- 484 (549)
|+|||.+|+|.+||+... +..++--..+.+|.||+.||+||.
T Consensus 341 iTEfM~yGNLLdYLRecn----r~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMt 416 (1157)
T KOG4278|consen 341 ITEFMCYGNLLDYLRECN----RSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMT 416 (1157)
T ss_pred EEecccCccHHHHHHHhc----hhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhhc
Confidence 999999999999999765 345666677899999999999997
Q ss_pred ----------------------------------------------ccccCCc----ceeeeccCcc-cchHHHHHHHHH
Q 039925 485 ----------------------------------------------VKMALPE----KVMEIVESSL-LLEIEDCLVSVL 513 (549)
Q Consensus 485 ----------------------------------------------~~~~~~~----~~~~~~~~~~-~~~~~~~~~~l~ 513 (549)
....+++ ++.+++..+. ...++.|+.+++
T Consensus 417 gDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY~LLEkgyRM~~PeGCPpkVY 496 (1157)
T KOG4278|consen 417 GDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYGLLEKGYRMDGPEGCPPKVY 496 (1157)
T ss_pred CCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccHHHHHHHHhccccccCCCCCCHHHH
Confidence 0111121 1223333333 234578999999
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHhhh
Q 039925 514 TIGILCSVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 514 ~l~~~C~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
++|..||+-+|.+||+|+||.+.++.|-.
T Consensus 497 eLMraCW~WsPsDRPsFaeiHqafEtmf~ 525 (1157)
T KOG4278|consen 497 ELMRACWNWSPSDRPSFAEIHQAFETMFS 525 (1157)
T ss_pred HHHHHHhcCCcccCccHHHHHHHHHHHhc
Confidence 99999999999999999999999998753
|
|
| >KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-16 Score=157.11 Aligned_cols=144 Identities=23% Similarity=0.327 Sum_probs=108.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCC--C---c-e-------------------------------------eEEEecc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE--K---W-T-------------------------------------AGYSEGT 428 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~--~---~-~-------------------------------------~g~~~~~ 428 (549)
...++....+.||+|+||.||+|++.. + . | +|++..
T Consensus 154 l~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~- 232 (474)
T KOG0194|consen 154 LSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVL- 232 (474)
T ss_pred EeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcC-
Confidence 345566677999999999999999743 2 1 2 788888
Q ss_pred ccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh------------------------
Q 039925 429 DFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR------------------------ 484 (549)
Q Consensus 429 ~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH------------------------ 484 (549)
+.+.++|||+|+||+|.++|+..+ ..++..++++++.++|+||+|||
T Consensus 233 ----~~Pl~ivmEl~~gGsL~~~L~k~~-----~~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKI 303 (474)
T KOG0194|consen 233 ----EEPLMLVMELCNGGSLDDYLKKNK-----KSLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKI 303 (474)
T ss_pred ----CCccEEEEEecCCCcHHHHHHhCC-----CCCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEe
Confidence 889999999999999999999765 36999999999999999999999
Q ss_pred ----------------------ccccCCc------------------ceeeeccC--------------------cc-cc
Q 039925 485 ----------------------VKMALPE------------------KVMEIVES--------------------SL-LL 503 (549)
Q Consensus 485 ----------------------~~~~~~~------------------~~~~~~~~--------------------~~-~~ 503 (549)
.++..|+ ..-+++.- .. .+
T Consensus 304 SDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~~~r~~ 383 (474)
T KOG0194|consen 304 SDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVKAKIVKNGYRMP 383 (474)
T ss_pred CccccccCCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHHHHHHHHHhcCccCC
Confidence 0000011 01111110 00 11
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhhhh
Q 039925 504 EIEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHARENVA 545 (549)
Q Consensus 504 ~~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~~~ 545 (549)
.+...+.++..++..||+.+|++||+|.+|++.++.+.+...
T Consensus 384 ~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~ 425 (474)
T KOG0194|consen 384 IPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKE 425 (474)
T ss_pred CCCCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhccc
Confidence 124667778888889999999999999999999999876543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-15 Score=164.55 Aligned_cols=151 Identities=24% Similarity=0.417 Sum_probs=123.8
Q ss_pred hhHHHHHHHHhhcCCCCCCCCCCCCCCCCC-----CCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCcc
Q 039925 2 TDHLALLAIKSLLHDRRGVTSSWSNSIDLC-----QWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEK 76 (549)
Q Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c-----~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~ 76 (549)
+|.+||+++|+++.++. ..+|.. ++| .|.||.|..... . ....++.|+|++|.+++.+|..
T Consensus 372 ~~~~aL~~~k~~~~~~~--~~~W~g--~~C~p~~~~w~Gv~C~~~~~--~--------~~~~v~~L~L~~n~L~g~ip~~ 437 (623)
T PLN03150 372 EEVSALQTLKSSLGLPL--RFGWNG--DPCVPQQHPWSGADCQFDST--K--------GKWFIDGLGLDNQGLRGFIPND 437 (623)
T ss_pred hHHHHHHHHHHhcCCcc--cCCCCC--CCCCCcccccccceeeccCC--C--------CceEEEEEECCCCCccccCCHH
Confidence 57899999999996553 248963 345 799999953211 0 1123678999999999999999
Q ss_pred ccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCC-CC
Q 039925 77 VGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNL-RS 155 (549)
Q Consensus 77 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~ 155 (549)
+..+++|+.|+|++|.+.+.+|..+..+++| +.|+|++|++++.+|..++++++|++|+|++|++++.+|..+..+ .+
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L-~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~ 516 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSL-EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCC-CEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcccc
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999888763 46
Q ss_pred CCEEecccCcce
Q 039925 156 LFYDNINRNEFS 167 (549)
Q Consensus 156 L~~L~L~~n~l~ 167 (549)
+..+++.+|...
T Consensus 517 ~~~l~~~~N~~l 528 (623)
T PLN03150 517 RASFNFTDNAGL 528 (623)
T ss_pred CceEEecCCccc
Confidence 677888877644
|
|
| >KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-15 Score=150.26 Aligned_cols=139 Identities=20% Similarity=0.270 Sum_probs=111.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCCC---ce--------------------------------------eEEEeccccC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEK---WT--------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~---~~--------------------------------------~g~~~~~~~~ 431 (549)
+.+.....++||.|-||.||+|++.+- .. .|+|.+
T Consensus 387 ~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e---- 462 (974)
T KOG4257|consen 387 RRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE---- 462 (974)
T ss_pred ehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeec----
Confidence 344556778899999999999998543 21 688885
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh---------------------------
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR--------------------------- 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH--------------------------- 484 (549)
.+.++|||.++-|.|+.||+..+ ..++......++.|++.||+|||
T Consensus 463 --~P~WivmEL~~~GELr~yLq~nk-----~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDF 535 (974)
T KOG4257|consen 463 --QPMWIVMELAPLGELREYLQQNK-----DSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADF 535 (974)
T ss_pred --cceeEEEecccchhHHHHHHhcc-----ccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeeccc
Confidence 68899999999999999999765 56888889999999999999999
Q ss_pred ----------------------------------------------------------ccccCCcceeeeccCcccchHH
Q 039925 485 ----------------------------------------------------------VKMALPEKVMEIVESSLLLEIE 506 (549)
Q Consensus 485 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 506 (549)
......+.+..+-.....+.++
T Consensus 536 GLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iEnGeRlP~P~ 615 (974)
T KOG4257|consen 536 GLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIENGERLPCPP 615 (974)
T ss_pred chhhhccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccceEEEecCCCCCCCCC
Confidence 0111112333444444456678
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhh
Q 039925 507 DCLVSVLTIGILCSVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 507 ~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
.||..++.++.+||+.+|.+||.|.|+...|+.+..
T Consensus 616 nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~q 651 (974)
T KOG4257|consen 616 NCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQ 651 (974)
T ss_pred CCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998875
|
|
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-15 Score=147.06 Aligned_cols=76 Identities=32% Similarity=0.492 Sum_probs=63.1
Q ss_pred CCccccCceecEEEEEeCC--Cc----e-----------------------------------eEEEeccccCCCceEEE
Q 039925 400 SNMIGQGSFGSVYKGILGE--KW----T-----------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 400 ~~~lG~G~~g~Vy~~~~~~--~~----~-----------------------------------~g~~~~~~~~~~~~~~l 438 (549)
.+.||.|+||.||+|.+.. .. + .|+|.. .+..++
T Consensus 4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~-----~~~~~l 78 (259)
T PF07714_consen 4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIE-----NEPLFL 78 (259)
T ss_dssp EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEES-----SSSEEE
T ss_pred eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccc-----cccccc
Confidence 4579999999999999981 11 1 688886 677999
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.++|+... ...++|..+.+|+.|||+||+|||
T Consensus 79 v~e~~~~g~L~~~L~~~~----~~~~~~~~~~~i~~~i~~~l~~Lh 120 (259)
T PF07714_consen 79 VMEYCPGGSLDDYLKSKN----KEPLSEQQRLSIAIQIAEALSYLH 120 (259)
T ss_dssp EEE--TTEBHHHHHHHTC----TTTSBHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccc----cccccccccccccccccccccccc
Confidence 999999999999999762 256899999999999999999999
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.2e-15 Score=142.33 Aligned_cols=81 Identities=22% Similarity=0.378 Sum_probs=66.6
Q ss_pred cccCcCCCccccCceecEEEEEeCC--Cc---e-----------------------------------eEEEeccccCCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE--KW---T-----------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~--~~---~-----------------------------------~g~~~~~~~~~~ 433 (549)
.++|...+.||+|+||.||+|.+.. .. + .|++.. .
T Consensus 4 ~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~ 78 (266)
T cd05064 4 NKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITR-----G 78 (266)
T ss_pred hHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEec-----C
Confidence 4568888999999999999998641 11 1 455555 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|+|.+++.... ..++|..++.++.|++.|++|||
T Consensus 79 ~~~~lv~e~~~~~~L~~~l~~~~-----~~l~~~~~~~~~~~i~~al~~lH 124 (266)
T cd05064 79 NTMMIVTEYMSNGALDSFLRKHE-----GQLVAGQLMGMLPGLASGMKYLS 124 (266)
T ss_pred CCcEEEEEeCCCCcHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999997643 46899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-14 Score=142.27 Aligned_cols=142 Identities=18% Similarity=0.242 Sum_probs=110.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce---------------------------eEEEeccccCCCceEEEEEeecC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------AGYSEGTDFKGIDFKAVVFDYMQ 444 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------~g~~~~~~~~~~~~~~lv~ey~~ 444 (549)
+..+..+..+.||.|+-|.||.|++++..| .|+|.. ...++||||||+
T Consensus 121 iPFe~IsELeWlGSGaQGAVF~Grl~netVAVKKV~elkETdIKHLRkLkH~NII~FkGVCtq-----sPcyCIiMEfCa 195 (904)
T KOG4721|consen 121 IPFEEISELEWLGSGAQGAVFLGRLHNETVAVKKVRELKETDIKHLRKLKHPNIITFKGVCTQ-----SPCYCIIMEFCA 195 (904)
T ss_pred CCHHHhhhhhhhccCcccceeeeeccCceehhHHHhhhhhhhHHHHHhccCcceeeEeeeecC-----CceeEEeeeccc
Confidence 455667788899999999999999988776 799998 788999999999
Q ss_pred CCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh----------------------------------------
Q 039925 445 NRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR---------------------------------------- 484 (549)
Q Consensus 445 ~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH---------------------------------------- 484 (549)
.|-|+++|+... +++....+.+..+||.||.|||
T Consensus 196 ~GqL~~VLka~~------~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkM 269 (904)
T KOG4721|consen 196 QGQLYEVLKAGR------PITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTKM 269 (904)
T ss_pred cccHHHHHhccC------ccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEeccccchHhhhhhhhhh
Confidence 999999999754 6788888999999999999999
Q ss_pred -----ccccCCcc------------------eeeeccCcc--------------------cchHHHHHHHHHHHHHHhcc
Q 039925 485 -----VKMALPEK------------------VMEIVESSL--------------------LLEIEDCLVSVLTIGILCSV 521 (549)
Q Consensus 485 -----~~~~~~~~------------------~~~~~~~~~--------------------~~~~~~~~~~l~~l~~~C~~ 521 (549)
+.++.|+. ..+++...+ .+.+..||..+.-|+..||+
T Consensus 270 SFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVGsNsL~LpvPstcP~GfklL~Kqcw~ 349 (904)
T KOG4721|consen 270 SFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSTCPDGFKLLLKQCWN 349 (904)
T ss_pred hhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchheeEEeccCCcccccCcccCchHHHHHHHHHHh
Confidence 11111110 011111111 12347899999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhh
Q 039925 522 ESPSERMEKPYIVSKLSHARENV 544 (549)
Q Consensus 522 ~~P~~RP~~~~v~~~L~~~~~~~ 544 (549)
..|..||+|.+|+..|+-...++
T Consensus 350 sKpRNRPSFrqil~HldIa~pel 372 (904)
T KOG4721|consen 350 SKPRNRPSFRQILLHLDIASPEL 372 (904)
T ss_pred cCCCCCccHHHHHHHHhhcCHHH
Confidence 99999999999999887665543
|
|
| >KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-15 Score=152.23 Aligned_cols=135 Identities=20% Similarity=0.304 Sum_probs=103.6
Q ss_pred CcCCCccccCceecEEEEEe-CCCce----------------------------------------eEEEeccccCCCce
Q 039925 397 FSSSNMIGQGSFGSVYKGIL-GEKWT----------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~-~~~~~----------------------------------------~g~~~~~~~~~~~~ 435 (549)
+....+||.|+||.||||.| +++.. +|+|.. +.
T Consensus 698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~------s~ 771 (1177)
T KOG1025|consen 698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCML------ST 771 (1177)
T ss_pred hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhccc------ch
Confidence 45677899999999999998 44432 577775 45
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh-------------------------------
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR------------------------------- 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH------------------------------- 484 (549)
..||++|||.|+|.++.+.++ ..+.-+..+.++.|||+||.|||
T Consensus 772 ~qlvtq~mP~G~LlDyvr~hr-----~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ 846 (1177)
T KOG1025|consen 772 LQLVTQLMPLGCLLDYVREHR-----DNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAK 846 (1177)
T ss_pred HHHHHHhcccchHHHHHHHhh-----ccccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhh
Confidence 889999999999999999765 56778889999999999999999
Q ss_pred ---------------------------------------------------c---cccCCcceeeecc-CcccchHHHHH
Q 039925 485 ---------------------------------------------------V---KMALPEKVMEIVE-SSLLLEIEDCL 509 (549)
Q Consensus 485 ---------------------------------------------------~---~~~~~~~~~~~~~-~~~~~~~~~~~ 509 (549)
. .....+.+.+.+. +.....++-|.
T Consensus 847 ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dlle~geRLsqPpiCt 926 (1177)
T KOG1025|consen 847 LLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLLEKGERLSQPPICT 926 (1177)
T ss_pred ccCcccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHHhccccCCCCCCcc
Confidence 0 0000011222221 11223457888
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhh
Q 039925 510 VSVLTIGILCSVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 510 ~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
..++-++.+||..|+..||+|++....+.++.+
T Consensus 927 iDVy~~mvkCwmid~~~rp~fkel~~~fs~~ar 959 (1177)
T KOG1025|consen 927 IDVYMVMVKCWMIDADSRPTFKELAEEFSRMAR 959 (1177)
T ss_pred HHHHHHHHHHhccCcccCccHHHHHHHHHHHhc
Confidence 899999999999999999999999999988764
|
|
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-14 Score=136.19 Aligned_cols=84 Identities=19% Similarity=0.315 Sum_probs=70.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce-----------------------------------eEEEeccccCCCceE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
++..+|...+.||+|+||.||+|...++.. ++++.. .+..
T Consensus 3 ~~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~ 77 (261)
T cd05148 3 RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSV-----GEPV 77 (261)
T ss_pred CcHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEec-----CCCe
Confidence 356688889999999999999999866432 355555 6778
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.++++... ...+++.++.+++.+++.|+.|||
T Consensus 78 ~lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~al~~lH 121 (261)
T cd05148 78 YIITELMEKGSLLAFLRSPE----GQVLPVASLIDMACQVAEGMAYLE 121 (261)
T ss_pred EEEEeecccCCHHHHHhcCC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998643 346899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.47 E-value=7e-14 Score=135.74 Aligned_cols=81 Identities=22% Similarity=0.371 Sum_probs=66.9
Q ss_pred cccCcCCCccccCceecEEEEEeCCC---c--e-----------------------------------eEEEeccccCCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEK---W--T-----------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~---~--~-----------------------------------~g~~~~~~~~~~ 433 (549)
.++|...+.||+|+||.||+|.+... . + .+.+.. .
T Consensus 3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~ 77 (266)
T cd05033 3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTK-----S 77 (266)
T ss_pred hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEec-----C
Confidence 46788999999999999999998532 1 1 333443 5
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|+|.+++.... ..++|..+++++.|++.|++|||
T Consensus 78 ~~~~iv~e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~Lh 123 (266)
T cd05033 78 RPVMIITEYMENGSLDKFLREND-----GKFTVGQLVGMLRGIASGMKYLS 123 (266)
T ss_pred CceEEEEEcCCCCCHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999997643 36899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-14 Score=134.20 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=67.3
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce-------------------------------------eEEEeccccCCCc-e
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT-------------------------------------AGYSEGTDFKGID-F 435 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-------------------------------------~g~~~~~~~~~~~-~ 435 (549)
.+++.....||+|..|+|||+..+.... +|++.. +. .
T Consensus 78 ~~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~-----~~~~ 152 (364)
T KOG0581|consen 78 LSDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYS-----NGEE 152 (364)
T ss_pred HHHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEe-----CCce
Confidence 3466777889999999999999864433 566665 45 5
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||.+|||+++++..+ ++++...-+||.+|.+||.|||
T Consensus 153 isI~mEYMDgGSLd~~~k~~g------~i~E~~L~~ia~~VL~GL~YLh 195 (364)
T KOG0581|consen 153 ISICMEYMDGGSLDDILKRVG------RIPEPVLGKIARAVLRGLSYLH 195 (364)
T ss_pred EEeehhhcCCCCHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998653 6889999999999999999999
|
|
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.2e-14 Score=134.42 Aligned_cols=80 Identities=28% Similarity=0.344 Sum_probs=67.2
Q ss_pred ccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEEEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
++|...+.||+|+||.||+|.+.++.. ++++.. .+..++||
T Consensus 4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~iv~ 78 (256)
T cd05114 4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQ-----QKPLYIVT 78 (256)
T ss_pred HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEcc-----CCCEEEEE
Confidence 567778899999999999998865422 455555 67789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.++++... ..++|..+..++.|++.||+|||
T Consensus 79 e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH 117 (256)
T cd05114 79 EFMENGCLLNYLRQRQ-----GKLSKDMLLSMCQDVCEGMEYLE 117 (256)
T ss_pred EcCCCCcHHHHHHhCc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997543 35889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-13 Score=138.72 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhh
Q 039925 508 CLVSVLTIGILCSVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 508 ~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
++.++.+++.+||+.+|++||++.||++.|+.+..
T Consensus 302 ~~~~l~~li~~cl~~dp~~RPs~~el~~~l~~~~~ 336 (338)
T cd05102 302 ATPEIYRIMLACWQGDPKERPTFSALVEILGDLLQ 336 (338)
T ss_pred CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 34568899999999999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-13 Score=132.38 Aligned_cols=82 Identities=22% Similarity=0.458 Sum_probs=67.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cc----e-----------------------------------eEEEeccccCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KW----T-----------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~----~-----------------------------------~g~~~~~~~~~ 432 (549)
.+++|+..+.||+|+||.||+|+... +. + .+++..
T Consensus 3 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----- 77 (268)
T cd05063 3 HPSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTK----- 77 (268)
T ss_pred ChHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEcc-----
Confidence 45688899999999999999998742 21 1 344444
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++... ..++|.++..++.|++.|++|||
T Consensus 78 ~~~~~lv~e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~~l~~al~~lH 124 (268)
T cd05063 78 FKPAMIITEYMENGALDKYLRDHD-----GEFSSYQLVGMLRGIAAGMKYLS 124 (268)
T ss_pred CCCcEEEEEcCCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999997543 46899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-13 Score=132.08 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=61.8
Q ss_pred CccccCceecEEEEEeCCCce-------------------------------------eEEEeccccCCCceEEEEEeec
Q 039925 401 NMIGQGSFGSVYKGILGEKWT-------------------------------------AGYSEGTDFKGIDFKAVVFDYM 443 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~~-------------------------------------~g~~~~~~~~~~~~~~lv~ey~ 443 (549)
..||+|++|.||+|.+.+..+ +|++... .......++||||+
T Consensus 26 ~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~-~~~~~~~~lv~Ey~ 104 (283)
T PHA02988 26 VLIKENDQNSIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDI-VDDLPRLSLILEYC 104 (283)
T ss_pred eEEeeCCceEEEEEEECCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEec-ccCCCceEEEEEeC
Confidence 679999999999999866544 3444320 01134678999999
Q ss_pred CCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 444 QNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 444 ~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|+|.++++... .++|..+++++.++|.||.|||
T Consensus 105 ~~g~L~~~l~~~~------~~~~~~~~~i~~~i~~~l~~lH 139 (283)
T PHA02988 105 TRGYLREVLDKEK------DLSFKTKLDMAIDCCKGLYNLY 139 (283)
T ss_pred CCCcHHHHHhhCC------CCChhHHHHHHHHHHHHHHHHH
Confidence 9999999998643 6889999999999999999999
|
|
| >KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.9e-14 Score=138.38 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=104.4
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce------------------------------------eEEEeccccCCCceE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------------------~g~~~~~~~~~~~~~ 436 (549)
+.......+.||+|-||.|..+...++.. +|+|.. .+++
T Consensus 536 PRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~-----DePi 610 (807)
T KOG1094|consen 536 PRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQ-----DDPL 610 (807)
T ss_pred chhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeec-----CCch
Confidence 44445677889999999999998776322 799998 8899
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh--------------------------------
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR-------------------------------- 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH-------------------------------- 484 (549)
++|+|||++|+|..++..+. ...+.-...++||.|||.||+||.
T Consensus 611 cmI~EYmEnGDLnqFl~ahe----apt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~ 686 (807)
T KOG1094|consen 611 CMITEYMENGDLNQFLSAHE----LPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRN 686 (807)
T ss_pred HHHHHHHhcCcHHHHHHhcc----CcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcccccc
Confidence 99999999999999999875 222455567889999999999997
Q ss_pred --------------------------------------------------ccccCC--------cceeeeccC----ccc
Q 039925 485 --------------------------------------------------VKMALP--------EKVMEIVES----SLL 502 (549)
Q Consensus 485 --------------------------------------------------~~~~~~--------~~~~~~~~~----~~~ 502 (549)
....+. ++..++.+. .++
T Consensus 687 lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l 766 (807)
T KOG1094|consen 687 LYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVL 766 (807)
T ss_pred cccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceec
Confidence 011111 011122211 112
Q ss_pred chHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 039925 503 LEIEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHA 540 (549)
Q Consensus 503 ~~~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~ 540 (549)
..+..|+.++++++++||..+-++||+|.+++.-|++.
T Consensus 767 ~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~ 804 (807)
T KOG1094|consen 767 SRPPACPQGLYELMLRCWRRESEQRPSFEQLHLFLQED 804 (807)
T ss_pred cCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHh
Confidence 33478999999999999999999999999999888754
|
|
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-13 Score=131.51 Aligned_cols=83 Identities=16% Similarity=0.292 Sum_probs=68.0
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..++|...+.||+|+||.||+|...++.. .+++.. .+..++
T Consensus 4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~l 78 (261)
T cd05072 4 PRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTK-----EEPIYI 78 (261)
T ss_pred chHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcC-----CCCcEE
Confidence 45678888999999999999998765432 334444 567899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.++++... ...+++.+++.++.|+++|++|||
T Consensus 79 v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~LH 120 (261)
T cd05072 79 ITEYMAKGSLLDFLKSDE----GGKVLLPKLIDFSAQIAEGMAYIE 120 (261)
T ss_pred EEecCCCCcHHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997543 346889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.5e-14 Score=141.08 Aligned_cols=133 Identities=20% Similarity=0.271 Sum_probs=99.1
Q ss_pred ccCcCCCccccCceecEEEEEeC--CCce--------------------------------------eEEEeccccCCCc
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILG--EKWT--------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~--~~~~--------------------------------------~g~~~~~~~~~~~ 434 (549)
+.....+.||+|.||+|++|.|. +|+. +|+-. ..
T Consensus 110 e~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl------~q 183 (1039)
T KOG0199|consen 110 EQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVL------DQ 183 (1039)
T ss_pred HHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeec------cc
Confidence 33445577999999999999995 3433 33333 24
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh------------------------------
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR------------------------------ 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH------------------------------ 484 (549)
...+|+|.++.|+|.+.|++.. ...|-......+|.|||.||.||.
T Consensus 184 p~mMV~ELaplGSLldrLrka~----~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLm 259 (1039)
T KOG0199|consen 184 PAMMVFELAPLGSLLDRLRKAK----KAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLM 259 (1039)
T ss_pred hhhHHhhhcccchHHHHHhhcc----ccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccce
Confidence 5679999999999999999732 456888889999999999999997
Q ss_pred ----------------------------------------------------ccccCCc----ceeeecc-CcccchHHH
Q 039925 485 ----------------------------------------------------VKMALPE----KVMEIVE-SSLLLEIED 507 (549)
Q Consensus 485 ----------------------------------------------------~~~~~~~----~~~~~~~-~~~~~~~~~ 507 (549)
.++.+.+ .+.+.+| ....+.+..
T Consensus 260 RaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD~~erLpRPk~ 339 (1039)
T KOG0199|consen 260 RALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNIDAGERLPRPKY 339 (1039)
T ss_pred eccCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhccccccCCCCCC
Confidence 0111111 2333333 233455689
Q ss_pred HHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 039925 508 CLVSVLTIGILCSVESPSERMEKPYIVSKL 537 (549)
Q Consensus 508 ~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L 537 (549)
|++.++++|..||+.+|++||+|..|++.+
T Consensus 340 csedIY~imk~cWah~paDRptFsair~~~ 369 (1039)
T KOG0199|consen 340 CSEDIYQIMKNCWAHNPADRPTFSAIREDL 369 (1039)
T ss_pred ChHHHHHHHHHhccCCccccccHHHHHHhH
Confidence 999999999999999999999999998544
|
|
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-13 Score=133.92 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=65.8
Q ss_pred cccCcCCCccccCceecEEEEEeCCCc------------------e----------------------------------
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKW------------------T---------------------------------- 421 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~------------------~---------------------------------- 421 (549)
.++|...+.||+|+||.||+|.+.++. +
T Consensus 4 ~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 83 (304)
T cd05096 4 RGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIR 83 (304)
T ss_pred hhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeE
Confidence 457788889999999999999763211 1
Q ss_pred -eEEEeccccCCCceEEEEEeecCCCCcccccccCCC-------------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 422 -AGYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNN-------------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 422 -~g~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~-------------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|++.. .+..++||||+++|+|.+++..... ......++|....+++.|+|+||+|||
T Consensus 84 ~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH 155 (304)
T cd05096 84 LLGVCVD-----EDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLS 155 (304)
T ss_pred EEEEEec-----CCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 455554 5678999999999999999864320 001235788899999999999999999
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-13 Score=130.64 Aligned_cols=82 Identities=21% Similarity=0.383 Sum_probs=67.0
Q ss_pred cccCcCCCccccCceecEEEEEeCCCc--e---------------------------------eEEEeccccCCCceEEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKW--T---------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~--~---------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..+|...+.||+|+||.||+|.+.+.. + .++|.. .+..++
T Consensus 5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~l 79 (263)
T cd05052 5 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-----EPPFYI 79 (263)
T ss_pred hHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcC-----CCCcEE
Confidence 346788889999999999999975322 1 455555 667899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.+++.... ...++|..++.++.|+++|++|||
T Consensus 80 v~e~~~~~~L~~~~~~~~----~~~l~~~~~~~~~~ql~~~l~~lH 121 (263)
T cd05052 80 ITEFMTYGNLLDYLRECN----RQEVNAVVLLYMATQISSAMEYLE 121 (263)
T ss_pred EEEeCCCCcHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997543 346899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-13 Score=139.09 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 039925 509 LVSVLTIGILCSVESPSERMEKPYIVSKLSHA 540 (549)
Q Consensus 509 ~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~ 540 (549)
+.++.+++.+||+.+|++||+|.||++.|++.
T Consensus 343 ~~~l~~li~~cl~~dP~~RPs~~eil~~l~~~ 374 (375)
T cd05104 343 PSEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ 374 (375)
T ss_pred CHHHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence 45688999999999999999999999999853
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-13 Score=132.15 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=45.4
Q ss_pred eEEEeccccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 422 AGYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 422 ~g~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|+|.. ....++||||+++|+|..+++... ..+++..++.++.|+|+||+|||
T Consensus 82 ~~~~~~-----~~~~~lv~ey~~~g~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~lH 134 (274)
T cd05076 82 HGVCVR-----GSENIMVEEFVEHGPLDVCLRKEK-----GRVPVAWKITVAQQLASALSYLE 134 (274)
T ss_pred EEEEEe-----CCceEEEEecCCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 466666 678899999999999999987543 35788889999999999999999
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt |
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-13 Score=130.84 Aligned_cols=80 Identities=28% Similarity=0.287 Sum_probs=64.7
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cc-----e-----------------------------------eEEEeccccCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KW-----T-----------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~-----~-----------------------------------~g~~~~~~~~~ 432 (549)
.++|...+.||+|+||.||+|.+.. +. + +|++.
T Consensus 6 ~~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~------ 79 (279)
T cd05111 6 ETELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP------ 79 (279)
T ss_pred HhhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC------
Confidence 4578888999999999999999732 21 1 34332
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++|+||+++|+|.++++... ..++|.....++.|+++||+|||
T Consensus 80 ~~~~~~i~e~~~~gsL~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~lH 126 (279)
T cd05111 80 GASLQLVTQLSPLGSLLDHVRQHR-----DSLDPQRLLNWCVQIAKGMYYLE 126 (279)
T ss_pred CCccEEEEEeCCCCcHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999998643 46899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.6e-13 Score=129.29 Aligned_cols=83 Identities=23% Similarity=0.373 Sum_probs=65.4
Q ss_pred ccCcCCCccccCceecEEEEEeCCCce------------------------------eEEEecc-ccCC-CceEEEEEee
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKWT------------------------------AGYSEGT-DFKG-IDFKAVVFDY 442 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------------~g~~~~~-~~~~-~~~~~lv~ey 442 (549)
......+.||+|.||.||+|.|++..| +|+..+. ...+ -...+||++|
T Consensus 211 rqI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdY 290 (513)
T KOG2052|consen 211 RQIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDY 290 (513)
T ss_pred heeEEEEEecCccccceeeccccCCceEEEEecccchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeec
Confidence 345667889999999999999999887 2221110 0000 1357999999
Q ss_pred cCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 443 MQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 443 ~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
-++|||+|||... +++-...+++|+.+|.||+|||
T Consensus 291 He~GSL~DyL~r~-------tv~~~~ml~LalS~AsGLaHLH 325 (513)
T KOG2052|consen 291 HEHGSLYDYLNRN-------TVTTEGMLKLALSIASGLAHLH 325 (513)
T ss_pred ccCCcHHHHHhhc-------cCCHHHHHHHHHHHhhhHHHHH
Confidence 9999999999864 5888999999999999999999
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-13 Score=125.64 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=65.9
Q ss_pred CCCccccCceecEEEEEeCCCce------------------------------------eEEEeccccCCCceEEEEEee
Q 039925 399 SSNMIGQGSFGSVYKGILGEKWT------------------------------------AGYSEGTDFKGIDFKAVVFDY 442 (549)
Q Consensus 399 ~~~~lG~G~~g~Vy~~~~~~~~~------------------------------------~g~~~~~~~~~~~~~~lv~ey 442 (549)
....|.+...|..|+|+|++..+ +|+|.. +....+|..|
T Consensus 194 l~tkl~e~hsgelwrgrwqgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacns-----ppnlv~isq~ 268 (448)
T KOG0195|consen 194 LITKLAESHSGELWRGRWQGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNS-----PPNLVIISQY 268 (448)
T ss_pred hhhhhccCCCcccccccccCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccC-----CCCceEeeee
Confidence 33457778899999999988765 577887 7888999999
Q ss_pred cCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 443 MQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 443 ~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||.|+|+.+||... ....+-.+.+++|+++|+||+|||
T Consensus 269 mp~gslynvlhe~t----~vvvd~sqav~faldiargmaflh 306 (448)
T KOG0195|consen 269 MPFGSLYNVLHEQT----SVVVDHSQAVRFALDIARGMAFLH 306 (448)
T ss_pred ccchHHHHHHhcCc----cEEEecchHHHHHHHHHhhHHHHh
Confidence 99999999999764 456778889999999999999999
|
|
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-13 Score=137.34 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhh
Q 039925 508 CLVSVLTIGILCSVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 508 ~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
++.++.+++.+||+.+|++||+|.+|++.|+++.+
T Consensus 365 ~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~~ 399 (400)
T cd05105 365 ATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLLP 399 (400)
T ss_pred CCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHcC
Confidence 45678899999999999999999999999988754
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-12 Score=128.93 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=64.6
Q ss_pred cccCcCCCccccCceecEEEEEeCC-----Cce-----------------------------------eEEEeccccCCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-----KWT-----------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-----~~~-----------------------------------~g~~~~~~~~~~ 433 (549)
..+|...+.||+|+||.||+|.+.. +.. .+++.. .+.
T Consensus 3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~---~~~ 79 (284)
T cd05081 3 ERHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYS---AGR 79 (284)
T ss_pred cccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEcc---CCC
Confidence 3467788899999999999998531 111 333332 114
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++|+|.+++.... ..++|..+..++.|+++|++|||
T Consensus 80 ~~~~lv~e~~~~~~L~~~l~~~~-----~~l~~~~~~~~~~~l~~aL~~LH 125 (284)
T cd05081 80 RNLRLVMEYLPYGSLRDYLQKHR-----ERLDHRKLLLYASQICKGMEYLG 125 (284)
T ss_pred CceEEEEEecCCCCHHHHHHhcC-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999997543 35899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th |
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.4e-13 Score=133.69 Aligned_cols=80 Identities=23% Similarity=0.379 Sum_probs=65.3
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cc-----e-----------------------------------eEEEeccccCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KW-----T-----------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~-----~-----------------------------------~g~~~~~~~~~ 432 (549)
..+|...+.||+|+||.||+|++.. +. + +|+|..
T Consensus 6 ~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~----- 80 (316)
T cd05108 6 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT----- 80 (316)
T ss_pred hhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcC-----
Confidence 3578999999999999999998632 21 1 455553
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....+|+||+++|+|.++++... ..+++...++++.|||+||+|||
T Consensus 81 -~~~~~v~e~~~~g~l~~~l~~~~-----~~~~~~~~~~~~~qi~~~L~~LH 126 (316)
T cd05108 81 -STVQLITQLMPFGCLLDYVREHK-----DNIGSQYLLNWCVQIAKGMNYLE 126 (316)
T ss_pred -CCceeeeecCCCCCHHHHHHhcc-----ccCCHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999998643 45889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.4e-13 Score=129.75 Aligned_cols=86 Identities=26% Similarity=0.417 Sum_probs=66.6
Q ss_pred cccCcCCCccccCceecEEEEEeCCCc-------e-----------------------------------eEEEeccccC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKW-------T-----------------------------------AGYSEGTDFK 431 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~-------~-----------------------------------~g~~~~~~~~ 431 (549)
.++|...+.||+|+||.||+|...+.. + .+++..
T Consensus 4 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~---- 79 (283)
T cd05048 4 LSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTK---- 79 (283)
T ss_pred hHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcC----
Confidence 457888899999999999999864322 1 344444
Q ss_pred CCceEEEEEeecCCCCcccccccCCCC----------CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNK----------LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~----------~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....+++|||+++|+|.+++...... .....+++...+.++.|++.|++|||
T Consensus 80 -~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH 141 (283)
T cd05048 80 -EQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLS 141 (283)
T ss_pred -CCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999754310 01145788889999999999999999
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-12 Score=129.44 Aligned_cols=85 Identities=24% Similarity=0.410 Sum_probs=65.8
Q ss_pred ccCcCCCccccCceecEEEEEeCCCc----e------------------------------------eEEEeccccCCCc
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKW----T------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~----~------------------------------------~g~~~~~~~~~~~ 434 (549)
++|...++||+|+||.||+|...+.. + .+++.. ..
T Consensus 2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~-----~~ 76 (297)
T cd05089 2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACEN-----RG 76 (297)
T ss_pred ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEcc-----CC
Confidence 67888899999999999999875321 1 233333 55
Q ss_pred eEEEEEeecCCCCcccccccCCC----------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNN----------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~----------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++|+||+++|+|.++++.... ......+++.....++.|++.|++|||
T Consensus 77 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH 136 (297)
T cd05089 77 YLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS 136 (297)
T ss_pred cceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999975321 011235889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.4e-13 Score=129.01 Aligned_cols=88 Identities=25% Similarity=0.362 Sum_probs=70.1
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-----Cce-------------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-----KWT-------------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-----~~~-------------------------------------~g~~~~~~ 429 (549)
.++++|...+.||+|+||.||+|.+.+ ... .+++..
T Consensus 3 ~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-- 80 (277)
T cd05036 3 VPRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFE-- 80 (277)
T ss_pred CCHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEcc--
Confidence 567889999999999999999999864 111 344444
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCC-CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNN-KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~-~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.++++.... ......++|..+++++.||+.|++|||
T Consensus 81 ---~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH 133 (277)
T cd05036 81 ---RLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLE 133 (277)
T ss_pred ---CCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5677999999999999999976541 112246899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.1e-13 Score=135.50 Aligned_cols=33 Identities=15% Similarity=0.022 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhh
Q 039925 509 LVSVLTIGILCSVESPSERMEKPYIVSKLSHAR 541 (549)
Q Consensus 509 ~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~ 541 (549)
+.++.+++.+||+.+|++||+|.||++.|+++.
T Consensus 368 ~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~~ 400 (401)
T cd05107 368 SDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDLL 400 (401)
T ss_pred CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence 457889999999999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.7e-13 Score=126.55 Aligned_cols=147 Identities=20% Similarity=0.232 Sum_probs=108.0
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce------------------------------------------eEEEeccccC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT------------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------------------------~g~~~~~~~~ 431 (549)
...+....++-+|.||.||+|.|++.+. .|+|.+.
T Consensus 283 r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~ie~--- 359 (563)
T KOG1024|consen 283 RCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSIED--- 359 (563)
T ss_pred hhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEeec---
Confidence 3447777788999999999999976543 4555542
Q ss_pred CCceEEEEEeecCCCCcccccccCC--CCCCCCCCchhhhHHHHHHHHHHHHHhh-------------------------
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSN--NKLKPSSLSMIRKLSTTIDVASAIEYLR------------------------- 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~--~~~~~~~l~~~~~~~ia~~va~gl~yLH------------------------- 484 (549)
....+++|.|+.-|+|..+|+.-+ .+...+.++-.+.+.+|.|+|.||+|||
T Consensus 360 -~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqVklt 438 (563)
T KOG1024|consen 360 -YATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQVKLT 438 (563)
T ss_pred -cCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeEEec
Confidence 567789999999999999998222 2335677888889999999999999999
Q ss_pred --------------------------------------------------ccc-cCC---------cceeee-ccCcccc
Q 039925 485 --------------------------------------------------VKM-ALP---------EKVMEI-VESSLLL 503 (549)
Q Consensus 485 --------------------------------------------------~~~-~~~---------~~~~~~-~~~~~~~ 503 (549)
++. ... ..+... .|.....
T Consensus 439 DsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~ylkdGyRla 518 (563)
T KOG1024|consen 439 DSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEHYLKDGYRLA 518 (563)
T ss_pred cchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHHHHhccceec
Confidence 000 000 001111 1111223
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhhh
Q 039925 504 EIEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHARENV 544 (549)
Q Consensus 504 ~~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~~ 544 (549)
.+..||.+++.+|.-||+..|++||+|.|++.-|.++...+
T Consensus 519 QP~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF~~ql 559 (563)
T KOG1024|consen 519 QPFNCPDELFTVMACCWALLPEERPSFSQLVICLSEFHTQL 559 (563)
T ss_pred CCCCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999998876543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-14 Score=143.81 Aligned_cols=212 Identities=22% Similarity=0.306 Sum_probs=155.2
Q ss_pred EEEccCCcceecCCc--cccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEee
Q 039925 61 FINLVDNNFRGEIPE--KVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFK 138 (549)
Q Consensus 61 ~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 138 (549)
.|.|++-++. ..|- .=-.+.--...||+.|++. ++|..+..+..| +.+.|..|.+. .+|..+.++..|.+|||+
T Consensus 54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~L-e~liLy~n~~r-~ip~~i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSL-ESLILYHNCIR-TIPEAICNLEALTFLDLS 129 (722)
T ss_pred ccccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHH-HHHHHHhccce-ecchhhhhhhHHHHhhhc
Confidence 3555555555 3332 1133455567888889988 888888888888 88888888886 677888888888888888
Q ss_pred cceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccc
Q 039925 139 ENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLY 217 (549)
Q Consensus 139 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~ 217 (549)
.|+++ .+|..++.|+ |+.|-+++|+++ .+|..++.+. |..|+.+.|.+. .+|..++ .+
T Consensus 130 ~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~-~l---------------- 188 (722)
T KOG0532|consen 130 SNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG-YL---------------- 188 (722)
T ss_pred cchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh-hH----------------
Confidence 88888 7787777764 788888888887 6777777666 888888888887 6666655 22
Q ss_pred cccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccc
Q 039925 218 WSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSL 297 (549)
Q Consensus 218 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l 297 (549)
.+|+.|.+..|++. .+|..+..+ .|..||++.|+++ .||-.|.+|..|++|-|.+|.+. ..|..+
T Consensus 189 -----~slr~l~vrRn~l~-~lp~El~~L---pLi~lDfScNkis-----~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 189 -----TSLRDLNVRRNHLE-DLPEELCSL---PLIRLDFSCNKIS-----YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred -----HHHHHHHHhhhhhh-hCCHHHhCC---ceeeeecccCcee-----ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 25677777888877 456566644 6888899999888 44788888999999999999888 555544
Q ss_pred c---CCCCCCEEEccCCc
Q 039925 298 G---YYQNLMELSVSRNK 312 (549)
Q Consensus 298 ~---~l~~L~~L~Ls~N~ 312 (549)
+ ...-.++|+..-++
T Consensus 254 C~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 254 CEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred Hhccceeeeeeecchhcc
Confidence 3 33445667776664
|
|
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.5e-13 Score=129.77 Aligned_cols=88 Identities=22% Similarity=0.351 Sum_probs=67.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-------e-----------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-------T-----------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-------~-----------------------------------~g~~~~~~ 429 (549)
.++++|...+.||+|+||.||+|.+.+.. + .+++..
T Consensus 3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~-- 80 (277)
T cd05062 3 VAREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ-- 80 (277)
T ss_pred ccHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC--
Confidence 46788999999999999999998764210 1 344444
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCCC----CCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNKL----KPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~----~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.++++...... ....++|..++.++.|+++|++|||
T Consensus 81 ---~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH 136 (277)
T cd05062 81 ---GQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLN 136 (277)
T ss_pred ---CCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999987533100 1234688889999999999999999
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.4e-13 Score=128.23 Aligned_cols=80 Identities=21% Similarity=0.327 Sum_probs=66.7
Q ss_pred ccCcCCCccccCceecEEEEEeCCCc-e---------------------------------eEEEeccccCCCceEEEEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKW-T---------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~-~---------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
++|...+.||+|+||.||+|.+.++. + +++|.. .+..++||
T Consensus 4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~lv~ 78 (256)
T cd05113 4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTK-----QRPIYIVT 78 (256)
T ss_pred HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEcc-----CCCcEEEE
Confidence 46777788999999999999876543 2 455555 56789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.++++... ..++|..+++++.|++.|++|||
T Consensus 79 e~~~~~~l~~~i~~~~-----~~~~~~~~~~~~~~i~~~l~~lH 117 (256)
T cd05113 79 EYMSNGCLLNYLREHG-----KRFQPSQLLEMCKDVCEGMAYLE 117 (256)
T ss_pred EcCCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997543 36899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-12 Score=129.16 Aligned_cols=86 Identities=21% Similarity=0.327 Sum_probs=66.7
Q ss_pred cccCcCCCccccCceecEEEEEeCCCc-------e----------------------------------eEEEeccccCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKW-------T----------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~-------~----------------------------------~g~~~~~~~~~ 432 (549)
..+|...+.||+|+||.||+|...+.. + .+++..
T Consensus 4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----- 78 (291)
T cd05094 4 RRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGD----- 78 (291)
T ss_pred hHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEcc-----
Confidence 346777889999999999999753211 1 455555
Q ss_pred CceEEEEEeecCCCCcccccccCCC----------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNN----------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~----------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++..... ......++|..++.++.|++.|++|||
T Consensus 79 ~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH 140 (291)
T cd05094 79 GDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLA 140 (291)
T ss_pred CCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999975431 011245899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-12 Score=127.52 Aligned_cols=81 Identities=26% Similarity=0.429 Sum_probs=65.9
Q ss_pred cccCcCCCccccCceecEEEEEeC--CCc---e-----------------------------------eEEEeccccCCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILG--EKW---T-----------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~---~-----------------------------------~g~~~~~~~~~~ 433 (549)
..+|...+.||+|+||.||+|... ++. + .+++.. .
T Consensus 3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~ 77 (267)
T cd05066 3 ASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTK-----S 77 (267)
T ss_pred HHHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-----C
Confidence 356788899999999999999863 111 1 344444 5
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|+|.+++.... ..+++.+.+.++.|++.|++|||
T Consensus 78 ~~~~lv~e~~~~~~L~~~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lH 123 (267)
T cd05066 78 KPVMIVTEYMENGSLDAFLRKHD-----GQFTVIQLVGMLRGIASGMKYLS 123 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999997543 45899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-14 Score=141.01 Aligned_cols=199 Identities=26% Similarity=0.399 Sum_probs=164.9
Q ss_pred cCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCC
Q 039925 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQ 133 (549)
Q Consensus 54 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~ 133 (549)
..+..-...||+.|++. .+|..+..+..|+.+.|.+|.+. .+|..+.++..| .+|||+.|++. .+|..+..|+ |+
T Consensus 72 ~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~l-t~l~ls~NqlS-~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEAL-TFLDLSSNQLS-HLPDGLCDLP-LK 146 (722)
T ss_pred ccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHH-HHhhhccchhh-cCChhhhcCc-ce
Confidence 45666778999999999 89999999999999999999999 899999999999 99999999998 6677666665 89
Q ss_pred EEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeeccc
Q 039925 134 VMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLL 212 (549)
Q Consensus 134 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~ 212 (549)
.|-+++|+++ .+|+.++.+..|..|+.+.|++. .+|..+.++. |+.|.+..|++. .+|.++. .|
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~L----------- 211 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SL----------- 211 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CC-----------
Confidence 9999999998 89999999999999999999998 6778888888 999999999988 7888776 33
Q ss_pred ccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCcc
Q 039925 213 AQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNK 288 (549)
Q Consensus 213 ~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~ 288 (549)
.|..||++.|++. .+|..|.+| ..|++|-|.+|.+.. -|..|- .-+...-.++|+..-++
T Consensus 212 -----------pLi~lDfScNkis-~iPv~fr~m--~~Lq~l~LenNPLqS-PPAqIC-~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 212 -----------PLIRLDFSCNKIS-YLPVDFRKM--RHLQVLQLENNPLQS-PPAQIC-EKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -----------ceeeeecccCcee-ecchhhhhh--hhheeeeeccCCCCC-ChHHHH-hccceeeeeeecchhcc
Confidence 4889999999998 789999999 999999999999873 221110 11334445677776663
|
|
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-12 Score=126.31 Aligned_cols=83 Identities=29% Similarity=0.317 Sum_probs=67.0
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce--------------------------------eEEEeccccCCCceEEEEEe
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------AGYSEGTDFKGIDFKAVVFD 441 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------~g~~~~~~~~~~~~~~lv~e 441 (549)
..+|...+.||+|+||.||+|...+..+ .|++.. .....++|||
T Consensus 5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~----~~~~~~lv~e 80 (256)
T cd05082 5 MKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGGLYIVTE 80 (256)
T ss_pred HHhCeeeeeecccCCCeEEEEEEcCCcEEEEEeCCCchHHHHHHHHHHHHhCCCCCeeeEEEEEEc----CCCceEEEEE
Confidence 4578888999999999999998765544 333322 1456899999
Q ss_pred ecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 442 YMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 442 y~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+++|+|.++++... ...++|..++.++.+++.|++|||
T Consensus 81 ~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH 119 (256)
T cd05082 81 YMAKGSLVDYLRSRG----RSVLGGDCLLKFSLDVCEAMEYLE 119 (256)
T ss_pred CCCCCcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999998643 245889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-12 Score=129.02 Aligned_cols=89 Identities=26% Similarity=0.371 Sum_probs=69.1
Q ss_pred ccccccCcCCCccccCceecEEEEEeCC-Cc-e--------------------------------------eEEEecccc
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGE-KW-T--------------------------------------AGYSEGTDF 430 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~-~--------------------------------------~g~~~~~~~ 430 (549)
+...++|...+.||+|+||.||+|.+.+ +. + .+++..
T Consensus 3 ~~~~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~--- 79 (303)
T cd05088 3 VLEWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH--- 79 (303)
T ss_pred ccchhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECC---
Confidence 3456788999999999999999998743 21 1 344444
Q ss_pred CCCceEEEEEeecCCCCcccccccCCC----------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNN----------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~----------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++.... ......+++.+++.++.|+++|++|||
T Consensus 80 --~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH 141 (303)
T cd05088 80 --RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS 141 (303)
T ss_pred --CCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999975431 011246889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-12 Score=126.75 Aligned_cols=80 Identities=28% Similarity=0.342 Sum_probs=66.7
Q ss_pred ccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEEEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
.+|...+.||+|+||.||+|.+.++.. ++++.. .+..++||
T Consensus 4 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~lv~ 78 (256)
T cd05059 4 SELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTK-----QRPIFIVT 78 (256)
T ss_pred HHcchhhhhccCCCceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcC-----CCceEEEE
Confidence 468888999999999999998765422 344444 56789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.++++... ..++|.....++.|++.|++|||
T Consensus 79 e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~lH 117 (256)
T cd05059 79 EYMANGCLLNYLRERK-----GKLGTEWLLDMCSDVCEAMEYLE 117 (256)
T ss_pred ecCCCCCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997643 36899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-12 Score=126.74 Aligned_cols=88 Identities=25% Similarity=0.391 Sum_probs=63.5
Q ss_pred CcCCCccccCceecEEEEEeCCCc-----e------------------------------------eEEEecccc-CCCc
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEKW-----T------------------------------------AGYSEGTDF-KGID 434 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~~-----~------------------------------------~g~~~~~~~-~~~~ 434 (549)
|...+.||+|+||.||+|.+.... + +|++..... ....
T Consensus 1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 80 (273)
T cd05035 1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP 80 (273)
T ss_pred CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence 456788999999999999874311 1 234433110 1123
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++|+||+++|+|.+++...........+++.....++.|++.|++|||
T Consensus 81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH 130 (273)
T cd05035 81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLS 130 (273)
T ss_pred ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999865432122346899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-12 Score=126.37 Aligned_cols=88 Identities=26% Similarity=0.362 Sum_probs=62.8
Q ss_pred CcCCCccccCceecEEEEEeCCCc----e------------------------------------eEEEeccc-cCCCce
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEKW----T------------------------------------AGYSEGTD-FKGIDF 435 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~~----~------------------------------------~g~~~~~~-~~~~~~ 435 (549)
|+.++.||+|+||.||+|.+.+.. + +|+|.... ......
T Consensus 1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 80 (272)
T cd05075 1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPS 80 (272)
T ss_pred CccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCC
Confidence 356788999999999999875432 1 34443211 011235
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++|||||++|+|.+++...........++|.....++.|++.|++|||
T Consensus 81 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH 129 (272)
T cd05075 81 PVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLS 129 (272)
T ss_pred cEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998753321112346899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-12 Score=127.15 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=63.9
Q ss_pred cCcCCCccccCceecEEEEEeCCC-------ce-----------------------------------eEEEeccccCCC
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEK-------WT-----------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~-------~~-----------------------------------~g~~~~~~~~~~ 433 (549)
+|...+.||+|+||.||+|+.... .+ .+.|.. .
T Consensus 1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~ 75 (290)
T cd05045 1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQ-----D 75 (290)
T ss_pred CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEec-----C
Confidence 466778999999999999985321 01 344544 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCC------------------CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNK------------------LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~------------------~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++|+||+++|+|.+++...... .....++|...+.++.|++.|++|||
T Consensus 76 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH 144 (290)
T cd05045 76 GPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLA 144 (290)
T ss_pred CCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998643200 11245889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-12 Score=124.91 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=64.9
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+|+... +.. .+++.. .+.
T Consensus 2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 76 (267)
T cd08228 2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIE-----DNE 76 (267)
T ss_pred cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEE-----CCe
Confidence 578889999999999999998642 221 334444 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++|+||+++|+|.+++..... ....+++.....++.|+++||+|||
T Consensus 77 ~~~v~e~~~~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~LH 123 (267)
T cd08228 77 LNIVLELADAGDLSQMIKYFKK--QKRLIPERTVWKYFVQLCSAVEHMH 123 (267)
T ss_pred EEEEEEecCCCcHHHHHHHhhh--ccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999998864320 1235788888999999999999999
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-12 Score=128.83 Aligned_cols=87 Identities=20% Similarity=0.238 Sum_probs=67.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCCC---------ce------------------------------------eEEEec
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEK---------WT------------------------------------AGYSEG 427 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~---------~~------------------------------------~g~~~~ 427 (549)
..++|...+.||+|+||.||++...+. .+ .++|..
T Consensus 16 ~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (307)
T cd05098 16 PRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ 95 (307)
T ss_pred ehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEec
Confidence 356788899999999999999875320 01 344544
Q ss_pred cccCCCceEEEEEeecCCCCcccccccCCCC----------CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 428 TDFKGIDFKAVVFDYMQNRSLEDWPYQSNNK----------LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 428 ~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~----------~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.++++..... .....++|..+++++.|++.|++|||
T Consensus 96 -----~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH 157 (307)
T cd05098 96 -----DGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLA 157 (307)
T ss_pred -----CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999764310 01235899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-12 Score=127.96 Aligned_cols=88 Identities=25% Similarity=0.363 Sum_probs=67.9
Q ss_pred cccccCcCCCccccCceecEEEEEeCC------C-ce-----------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE------K-WT-----------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~------~-~~-----------------------------------~g~~~~~~ 429 (549)
...++|...+.||+|+||.||+|...+ + .+ .++|..
T Consensus 2 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~-- 79 (288)
T cd05050 2 YPRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAV-- 79 (288)
T ss_pred CChHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcC--
Confidence 356789999999999999999998642 1 11 345554
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCC----------------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNN----------------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~----------------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++..... ......+++..++.++.|++.|++|||
T Consensus 80 ---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH 147 (288)
T cd05050 80 ---GKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLS 147 (288)
T ss_pred ---CCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999974320 011235788889999999999999999
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-12 Score=127.54 Aligned_cols=86 Identities=22% Similarity=0.354 Sum_probs=67.2
Q ss_pred cccCcCCCccccCceecEEEEEeCC------Cc-e----------------------------------eEEEeccccCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE------KW-T----------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~------~~-~----------------------------------~g~~~~~~~~~ 432 (549)
..+|...+.||+|+||.||++.... +. + .+++..
T Consensus 4 ~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----- 78 (288)
T cd05093 4 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE----- 78 (288)
T ss_pred hHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-----
Confidence 4578889999999999999997421 11 0 455655
Q ss_pred CceEEEEEeecCCCCcccccccCCC-------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNN-------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~-------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++.... ......++|..++.++.|++.||+|||
T Consensus 79 ~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH 137 (288)
T cd05093 79 GDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLA 137 (288)
T ss_pred CCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999875430 011235899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-12 Score=123.63 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=66.4
Q ss_pred cccCcCCCccccCceecEEEEEeC-CCce--------------------------------------eEEEeccccCCCc
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILG-EKWT--------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--------------------------------------~g~~~~~~~~~~~ 434 (549)
+++|...+.||+|+||.||+|... ++.. .+++.. .+
T Consensus 1 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~-----~~ 75 (267)
T cd08224 1 LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIE-----NN 75 (267)
T ss_pred CCceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeec-----CC
Confidence 357888999999999999999986 3322 233333 56
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... .....+++.++..++.++++|+.|||
T Consensus 76 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~lh 123 (267)
T cd08224 76 ELNIVLELADAGDLSRMIKHFK--KQKRLIPERTIWKYFVQLCSALEHMH 123 (267)
T ss_pred eEEEEEecCCCCCHHHHHHHhc--ccCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999986432 12345889999999999999999999
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-12 Score=124.99 Aligned_cols=83 Identities=25% Similarity=0.384 Sum_probs=69.2
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce---------------------------------eEEEeccccCCCceEEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
..++|...+.||+|+||.||+|...+..+ .+++.. ....++|
T Consensus 4 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~~v 78 (256)
T cd05039 4 NSKELKLGATIGKGEFGDVMLGDYRGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQ-----GNPLYIV 78 (256)
T ss_pred ChhhccceeeeecCCCceEEEEEecCcEEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcC-----CCCeEEE
Confidence 35678889999999999999998875544 344444 6778999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.++++... ...++|..+..++.|++.|+.|||
T Consensus 79 ~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~qi~~~l~~lh 119 (256)
T cd05039 79 TEYMAKGSLVDYLRSRG----RAVITLAQQLGFALDVCEGMEYLE 119 (256)
T ss_pred EEecCCCcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997543 236899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk |
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-12 Score=125.79 Aligned_cols=83 Identities=19% Similarity=0.278 Sum_probs=68.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..++|...+.||+|+||.||+|.+.++.. .+++.. .+..++
T Consensus 4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~l 78 (261)
T cd05068 4 DRTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTL-----EEPIYI 78 (261)
T ss_pred chhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEec-----CCCeee
Confidence 45678888999999999999998755432 344554 667899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.+++.... ...++|..+..++.+++.|+.|||
T Consensus 79 v~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH 120 (261)
T cd05068 79 VTELMKYGSLLEYLQGGA----GRALKLPQLIDMAAQVASGMAYLE 120 (261)
T ss_pred eeecccCCcHHHHHhccC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997543 346899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-12 Score=123.99 Aligned_cols=74 Identities=22% Similarity=0.366 Sum_probs=60.8
Q ss_pred CccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceEEEEEeec
Q 039925 401 NMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFKAVVFDYM 443 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~~lv~ey~ 443 (549)
+.||+|+||.||+|.... +.. .++|.. ....++||||+
T Consensus 1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~lv~e~~ 75 (252)
T cd05084 1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQ-----KQPIYIVMELV 75 (252)
T ss_pred CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC-----CCCeEEEEeec
Confidence 369999999999998742 321 455555 66789999999
Q ss_pred CCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 444 QNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 444 ~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|+|.++++... ..++|...+.++.|+++||+|||
T Consensus 76 ~~~~L~~~~~~~~-----~~~~~~~~~~~~~qi~~~L~~lH 111 (252)
T cd05084 76 QGGDFLTFLRTEG-----PRLKVKELIQMVENAAAGMEYLE 111 (252)
T ss_pred cCCcHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999997543 35889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-12 Score=133.15 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhh
Q 039925 509 LVSVLTIGILCSVESPSERMEKPYIVSKLSHAR 541 (549)
Q Consensus 509 ~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~ 541 (549)
+.++.+++.+||+.+|++||++.+|++.|+++.
T Consensus 341 ~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~~ 373 (374)
T cd05106 341 PPEIYSIMKMCWNLEPTERPTFSQISQLIQRQL 373 (374)
T ss_pred CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHh
Confidence 456889999999999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-12 Score=126.36 Aligned_cols=80 Identities=24% Similarity=0.391 Sum_probs=64.6
Q ss_pred cccCcCCCccccCceecEEEEEeC-CCc-----e-----------------------------------eEEEeccccCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILG-EKW-----T-----------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~-----~-----------------------------------~g~~~~~~~~~ 432 (549)
.++|...+.||+|+||.||+|.+. ++. + .|+|..
T Consensus 6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~----- 80 (279)
T cd05109 6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT----- 80 (279)
T ss_pred hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-----
Confidence 457888899999999999999863 222 1 344432
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++++||+++|+|.++++... ..+++...+.++.|+++||+|||
T Consensus 81 -~~~~l~~~~~~~g~l~~~l~~~~-----~~~~~~~~~~~~~qi~~~L~~lH 126 (279)
T cd05109 81 -STVQLVTQLMPYGCLLDYVRENK-----DRIGSQDLLNWCVQIAKGMSYLE 126 (279)
T ss_pred -CCcEEEEEcCCCCCHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999998643 46889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-12 Score=125.87 Aligned_cols=80 Identities=21% Similarity=0.393 Sum_probs=64.6
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cc----e-----------------------------------eEEEeccccCCCc
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KW----T-----------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~----~-----------------------------------~g~~~~~~~~~~~ 434 (549)
.+|...+.||+|+||.||+|.+.. +. + .+++.. ..
T Consensus 4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~-----~~ 78 (269)
T cd05065 4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTK-----SR 78 (269)
T ss_pred HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECC-----CC
Confidence 356778899999999999998743 21 1 333433 56
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.++++... ..+++..++.++.|++.|++|||
T Consensus 79 ~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~~l~~al~~lH 123 (269)
T cd05065 79 PVMIITEFMENGALDSFLRQND-----GQFTVIQLVGMLRGIAAGMKYLS 123 (269)
T ss_pred ceEEEEecCCCCcHHHHHhhCC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999997543 35889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr |
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-12 Score=127.78 Aligned_cols=87 Identities=20% Similarity=0.277 Sum_probs=66.0
Q ss_pred ccccCcCCCccccCceecEEEEEeCC----C----c-e------------------------------------eEEEec
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE----K----W-T------------------------------------AGYSEG 427 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~----~----~-~------------------------------------~g~~~~ 427 (549)
..++|...+.||+|+||.||+|++.. . . + .+++..
T Consensus 13 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~ 92 (304)
T cd05101 13 SRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 92 (304)
T ss_pred cHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEec
Confidence 34578888999999999999997421 0 0 1 344444
Q ss_pred cccCCCceEEEEEeecCCCCcccccccCCCC----------CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 428 TDFKGIDFKAVVFDYMQNRSLEDWPYQSNNK----------LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 428 ~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~----------~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++...... .....++|..++.++.|+++|++|||
T Consensus 93 -----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH 154 (304)
T cd05101 93 -----DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLA 154 (304)
T ss_pred -----CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999764310 01245788899999999999999999
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-12 Score=127.33 Aligned_cols=87 Identities=22% Similarity=0.265 Sum_probs=67.7
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc------e-------------------------------------eEEEeccc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW------T-------------------------------------AGYSEGTD 429 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~------~-------------------------------------~g~~~~~~ 429 (549)
..++|...+.||+|+||.||+|.+.+.. . .+++..
T Consensus 10 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~-- 87 (293)
T cd05053 10 PRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQ-- 87 (293)
T ss_pred CHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcC--
Confidence 4567888889999999999999864321 0 344444
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCC----------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNN----------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~----------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++.... ......++|..+++++.|++.|+.|||
T Consensus 88 ---~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH 149 (293)
T cd05053 88 ---EGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLA 149 (293)
T ss_pred ---CCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999864320 012356899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-12 Score=125.97 Aligned_cols=74 Identities=26% Similarity=0.387 Sum_probs=60.8
Q ss_pred CccccCceecEEEEEeCCCc---------e----------------------------------eEEEeccccCCCceEE
Q 039925 401 NMIGQGSFGSVYKGILGEKW---------T----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~---------~----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+.||+|+||.||+|...... + ++++.. .+..+
T Consensus 1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~-----~~~~~ 75 (258)
T cd05078 1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVC-----GDESI 75 (258)
T ss_pred CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEe-----CCCcE
Confidence 36999999999999864210 1 455655 56789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.++++..+ ..++|..++.++.|++.|++|||
T Consensus 76 lv~e~~~~g~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH 117 (258)
T cd05078 76 MVQEYVKFGSLDTYLKKNK-----NLINISWKLEVAKQLAWALHFLE 117 (258)
T ss_pred EEEecCCCCcHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998654 36889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.6e-12 Score=124.01 Aligned_cols=79 Identities=28% Similarity=0.419 Sum_probs=60.4
Q ss_pred CccccCceecEEEEEeCCCce----------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEKWT----------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~~----------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
++||+|+||.||+|.+.+... ++++.. ....++||
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-----~~~~~lv~ 75 (270)
T cd05047 1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH-----RGYLYLAI 75 (270)
T ss_pred CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEec-----CCCceEEE
Confidence 369999999999998754221 344444 56689999
Q ss_pred eecCCCCcccccccCCC----------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNN----------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~----------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.++++.... ......+++.++..++.|++.|++|||
T Consensus 76 e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH 129 (270)
T cd05047 76 EYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS 129 (270)
T ss_pred EeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999875320 011235789999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-12 Score=123.72 Aligned_cols=83 Identities=19% Similarity=0.313 Sum_probs=68.2
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..++|...+.||+|+||.||+|...++.. .+++.. ....++
T Consensus 4 ~~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~~ 78 (261)
T cd05034 4 PRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSE-----EEPIYI 78 (261)
T ss_pred chhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeec-----CCceEE
Confidence 45688889999999999999998765422 333433 567899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.++++... ...+++..+..++.+++.|+.|||
T Consensus 79 v~e~~~~~~L~~~i~~~~----~~~~~~~~~~~~~~~i~~al~~lh 120 (261)
T cd05034 79 VTEYMSKGSLLDFLKSGE----GKKLRLPQLVDMAAQIAEGMAYLE 120 (261)
T ss_pred EEeccCCCCHHHHHhccc----cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997643 346899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-12 Score=126.56 Aligned_cols=88 Identities=19% Similarity=0.313 Sum_probs=66.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCC----C---ce-----------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE----K---WT-----------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~----~---~~-----------------------------------~g~~~~~~ 429 (549)
..+++|...+.||+|+||.||+|...+ . .+ ++++..
T Consensus 3 ~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-- 80 (288)
T cd05061 3 VSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSK-- 80 (288)
T ss_pred ccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC--
Confidence 456789999999999999999987542 1 11 344444
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCC----CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNN----KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~----~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.++++.... .......++.....++.|++.|+.|||
T Consensus 81 ---~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH 136 (288)
T cd05061 81 ---GQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLN 136 (288)
T ss_pred ---CCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999975321 011234577788899999999999999
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-12 Score=123.61 Aligned_cols=72 Identities=21% Similarity=0.389 Sum_probs=58.0
Q ss_pred ccccCceecEEEEEeC--CCc--e-----------------------------------eEEEeccccCCCceEEEEEee
Q 039925 402 MIGQGSFGSVYKGILG--EKW--T-----------------------------------AGYSEGTDFKGIDFKAVVFDY 442 (549)
Q Consensus 402 ~lG~G~~g~Vy~~~~~--~~~--~-----------------------------------~g~~~~~~~~~~~~~~lv~ey 442 (549)
.||+|+||.||+|.+. ++. + .|+|. .+..++||||
T Consensus 2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~------~~~~~lv~e~ 75 (257)
T cd05115 2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE------AEALMLVMEM 75 (257)
T ss_pred ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc------CCCeEEEEEe
Confidence 3899999999999874 211 1 34443 3567899999
Q ss_pred cCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 443 MQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 443 ~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+++|+|.+++.... ..+++..+++++.|+++||+|||
T Consensus 76 ~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~i~~~l~~lH 112 (257)
T cd05115 76 ASGGPLNKFLSGKK-----DEITVSNVVELMHQVSMGMKYLE 112 (257)
T ss_pred CCCCCHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999997543 46899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-12 Score=123.22 Aligned_cols=82 Identities=20% Similarity=0.318 Sum_probs=66.2
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..++|...+.||+|+||.||+|...++.. .+++. ....++
T Consensus 4 ~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~------~~~~~l 77 (260)
T cd05070 4 PRESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVS------EEPIYI 77 (260)
T ss_pred chHHhhhhheeccccCceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEEC------CCCcEE
Confidence 44678888999999999999998765432 22221 456789
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.++++... ...+++.++..++.+++.|++|||
T Consensus 78 v~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~al~~lH 119 (260)
T cd05070 78 VTEYMSKGSLLDFLKDGE----GRALKLPNLVDMAAQVAAGMAYIE 119 (260)
T ss_pred EEEecCCCcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997543 345899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-12 Score=124.65 Aligned_cols=80 Identities=20% Similarity=0.347 Sum_probs=64.5
Q ss_pred cccCcCCCccccCceecEEEEEeCCC-----ce-----------------------------------eEEEeccccCCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEK-----WT-----------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~-----~~-----------------------------------~g~~~~~~~~~~ 433 (549)
-++|...+.||+|+||.||+|.+.+. .+ .+++. .
T Consensus 5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~------~ 78 (270)
T cd05056 5 REDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVIT------E 78 (270)
T ss_pred hhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEc------C
Confidence 34677888999999999999987543 11 34443 3
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|+|.+++.... ..+++..++.++.+++.|++|||
T Consensus 79 ~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~lH 124 (270)
T cd05056 79 NPVWIVMELAPLGELRSYLQVNK-----YSLDLASLILYSYQLSTALAYLE 124 (270)
T ss_pred CCcEEEEEcCCCCcHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999997543 35899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions |
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.5e-12 Score=122.40 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=65.5
Q ss_pred ccCcCCCccccCceecEEEEEeC-CCce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILG-EKWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+|... ++.. ++++.. .+.
T Consensus 2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~~ 76 (267)
T cd08229 2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE-----DNE 76 (267)
T ss_pred chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEe-----CCe
Confidence 46788889999999999999963 3322 233443 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+++|||+++|+|.++++... .....++|.....++.++++|++|||
T Consensus 77 ~~~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~LH 123 (267)
T cd08229 77 LNIVLELADAGDLSRMIKHFK--KQKRLIPEKTVWKYFVQLCSALEHMH 123 (267)
T ss_pred EEEEEEecCCCCHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999987432 12346889999999999999999999
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-12 Score=122.94 Aligned_cols=75 Identities=27% Similarity=0.437 Sum_probs=58.0
Q ss_pred CccccCceecEEEEEeCCC--c---e-----------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEK--W---T-----------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~--~---~-----------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+.||+|+||.||+|.+.+. . + .++|.. .+...++||
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----~~~~~~lv~ 76 (262)
T cd05058 1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLP----SEGSPLVVL 76 (262)
T ss_pred CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeec----CCCCcEEEE
Confidence 4689999999999986321 1 1 344432 144578999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.++++... ...++...+.++.|+++|++|||
T Consensus 77 e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH 115 (262)
T cd05058 77 PYMKHGDLRNFIRSET-----HNPTVKDLIGFGLQVAKGMEYLA 115 (262)
T ss_pred ecCCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997543 34677888999999999999999
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.5e-12 Score=122.87 Aligned_cols=80 Identities=21% Similarity=0.223 Sum_probs=65.4
Q ss_pred cCcCCCccccCceecEEEEEeCCCce--------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+|...+.||+|+||.||+|....... .+++.. .+..+
T Consensus 1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 75 (256)
T cd08529 1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLD-----KGKLN 75 (256)
T ss_pred CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeecc-----CCEEE
Confidence 46777889999999999998753221 344444 57789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++++|.++++... ...+++....+++.++++|+.|||
T Consensus 76 lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~~l~~al~~lH 118 (256)
T cd08529 76 IVMEYAENGDLHKLLKMQR----GRPLPEDQVWRFFIQILLGLAHLH 118 (256)
T ss_pred EEEEeCCCCcHHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998642 246889999999999999999999
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-12 Score=123.63 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=40.4
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... .+++.....++.|++.|++|||
T Consensus 67 ~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~al~~lH 112 (257)
T cd05116 67 AESWMLVMELAELGPLNKFLQKNK------HVTEKNITELVHQVSMGMKYLE 112 (257)
T ss_pred CCCcEEEEecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999997543 5889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-12 Score=124.89 Aligned_cols=88 Identities=22% Similarity=0.342 Sum_probs=68.2
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-----Cce------------------------------------eEEEeccccC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-----KWT------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-----~~~------------------------------------~g~~~~~~~~ 431 (549)
..++|...++||+|+||.||+|.+.+ +.. +|++..
T Consensus 4 ~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~---- 79 (280)
T cd05043 4 SRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIE---- 79 (280)
T ss_pred chhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec----
Confidence 45678888999999999999999765 211 344433
Q ss_pred CCceEEEEEeecCCCCcccccccCCC--CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNN--KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~--~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....++++||+++|+|.+++..... ......+++..+..++.|++.||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH 134 (280)
T cd05043 80 DGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLH 134 (280)
T ss_pred CCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 14677899999999999999875431 011256899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-12 Score=122.33 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=65.7
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..+.|...+.||+|+||.||+|.+.+... .+.+. ....++
T Consensus 4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~------~~~~~l 77 (262)
T cd05071 4 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS------EEPIYI 77 (262)
T ss_pred ChHHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhCCCCCcceEEEEEC------CCCcEE
Confidence 34678888999999999999998755422 22221 355789
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.++++... ...++|..+..++.|+++||+|||
T Consensus 78 v~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~aL~~lH 119 (262)
T cd05071 78 VTEYMSKGSLLDFLKGEM----GKYLRLPQLVDMAAQIASGMAYVE 119 (262)
T ss_pred EEEcCCCCcHHHHHhhcc----ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998543 245789999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-12 Score=128.58 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=29.8
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhh
Q 039925 510 VSVLTIGILCSVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 510 ~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
.++.+++..||+.+|++||++.||++.|+.+..
T Consensus 309 ~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~ 341 (343)
T cd05103 309 PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 341 (343)
T ss_pred HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 468899999999999999999999999988754
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.4e-12 Score=121.79 Aligned_cols=74 Identities=22% Similarity=0.429 Sum_probs=61.5
Q ss_pred CccccCceecEEEEEeCCCce------------------------------------eEEEeccccCCCceEEEEEeecC
Q 039925 401 NMIGQGSFGSVYKGILGEKWT------------------------------------AGYSEGTDFKGIDFKAVVFDYMQ 444 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~~------------------------------------~g~~~~~~~~~~~~~~lv~ey~~ 444 (549)
++||+|+||.||+|...++.. .+.|.. ....++||||++
T Consensus 1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~lv~e~~~ 75 (250)
T cd05085 1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQ-----RQPIYIVMELVP 75 (250)
T ss_pred CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEec-----CCccEEEEECCC
Confidence 369999999999998765432 455555 667899999999
Q ss_pred CCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 445 NRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 445 ~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|+|.+++.... ..++|..++.++.|++.|+.|+|
T Consensus 76 ~~~L~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH 110 (250)
T cd05085 76 GGDFLSFLRKKK-----DELKTKQLVKFALDAAAGMAYLE 110 (250)
T ss_pred CCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999987543 35789999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-12 Score=127.62 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=65.1
Q ss_pred ccCcCCCccccCceecEEEEEeCCC---------ce------------------------------------eEEEeccc
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEK---------WT------------------------------------AGYSEGTD 429 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~---------~~------------------------------------~g~~~~~~ 429 (549)
..|...+.||+|+||.||+|...+. .+ .++|..
T Consensus 12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-- 89 (334)
T cd05100 12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ-- 89 (334)
T ss_pred hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEcc--
Confidence 3577788999999999999975210 01 344544
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCC----------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNN----------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~----------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++..... ......++|..++.++.|+++||.|||
T Consensus 90 ---~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH 151 (334)
T cd05100 90 ---DGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA 151 (334)
T ss_pred ---CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999975421 012346889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-12 Score=122.50 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=45.1
Q ss_pred eEEEeccccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 422 AGYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 422 ~g~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|++.. ....++||||+++|+|..+++... ..+++..+.+++.|+|+||+|||
T Consensus 70 ~~~~~~-----~~~~~lv~e~~~~~~l~~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH 122 (262)
T cd05077 70 YGVCVR-----DVENIMVEEFVEFGPLDLFMHRKS-----DVLTTPWKFKVAKQLASALSYLE 122 (262)
T ss_pred EEEEec-----CCCCEEEEecccCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHhh
Confidence 466665 667899999999999999887543 45889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.5e-12 Score=125.64 Aligned_cols=87 Identities=21% Similarity=0.293 Sum_probs=66.5
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-------C--ce------------------------------------eEEEec
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-------K--WT------------------------------------AGYSEG 427 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-------~--~~------------------------------------~g~~~~ 427 (549)
..++|...+.||+|+||.||+|...+ . .+ .++|..
T Consensus 10 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~ 89 (314)
T cd05099 10 PRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQ 89 (314)
T ss_pred cHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEcc
Confidence 34578888999999999999986421 0 01 344544
Q ss_pred cccCCCceEEEEEeecCCCCcccccccCCC----------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 428 TDFKGIDFKAVVFDYMQNRSLEDWPYQSNN----------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 428 ~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~----------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++..... ......++|...++++.|++.|+.|||
T Consensus 90 -----~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH 151 (314)
T cd05099 90 -----EGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE 151 (314)
T ss_pred -----CCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999975431 011246899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.4e-12 Score=130.49 Aligned_cols=199 Identities=30% Similarity=0.417 Sum_probs=149.0
Q ss_pred CEeecccccccccCCcccccccCccceeeecccccccccccccCCCC-CCCEEEeecceeeeeCCccccCCCCCCEEecc
Q 039925 84 EYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPS-AIQVMIFKENSLEGKFPNTLSNLRSLFYDNIN 162 (549)
Q Consensus 84 ~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 162 (549)
..++++.|.+. ..+..+..++.+ +.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|+++
T Consensus 96 ~~l~~~~~~~~-~~~~~~~~~~~l-~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLR-SNISELLELTNL-TSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccc-cCchhhhcccce-eEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccC
Confidence 35777777775 234445556677 88888888887 4555566664 8888888888888 666778888899999999
Q ss_pred cCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccCh
Q 039925 163 RNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITL 241 (549)
Q Consensus 163 ~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
+|++. .+|......+ |+.|++++|+++ .+|..+. ....|++|.+++|.+. ..+.
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~----------------------~~~~L~~l~~~~N~~~-~~~~ 226 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE----------------------LLSALEELDLSNNSII-ELLS 226 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhh----------------------hhhhhhhhhhcCCcce-ecch
Confidence 98887 5555554666 888999999888 6776542 1125788888888543 3455
Q ss_pred hhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC
Q 039925 242 GIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL 320 (549)
Q Consensus 242 ~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 320 (549)
.+..+ .++..|.+.+|++... +..++.++++++|++++|.++ .++. +..+.+|+.|++++|.++..+|..
T Consensus 227 ~~~~~--~~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 227 SLSNL--KNLSGLELSNNKLEDL-----PESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhhhc--ccccccccCCceeeec-----cchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 67777 8888888999988731 466788889999999999998 4554 888999999999999998765543
|
|
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.7e-12 Score=122.17 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=58.4
Q ss_pred CccccCceecEEEEEeCCCc-----e-----------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEKW-----T-----------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~-----~-----------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+.||+|+||.||+|++.... + ++++. .+..++||
T Consensus 1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------~~~~~~v~ 74 (257)
T cd05060 1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK------GEPLMLVM 74 (257)
T ss_pred CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc------CCceEEEE
Confidence 46999999999999864322 1 23332 34678999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.+++.... .+++..++.++.|+++|++|||
T Consensus 75 e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lh 112 (257)
T cd05060 75 ELAPLGPLLKYLKKRR------EIPVSDLKELAHQVAMGMAYLE 112 (257)
T ss_pred EeCCCCcHHHHHHhCC------CCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998543 6889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-12 Score=125.02 Aligned_cols=84 Identities=21% Similarity=0.207 Sum_probs=67.1
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC-------ce------------------------------------eEEEecc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK-------WT------------------------------------AGYSEGT 428 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~-------~~------------------------------------~g~~~~~ 428 (549)
...++|...+.||+|+||.||+|...+. .+ .+++..
T Consensus 32 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~- 110 (302)
T cd05055 32 FPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTI- 110 (302)
T ss_pred ccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEec-
Confidence 4556889999999999999999874210 00 344544
Q ss_pred ccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 429 DFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 429 ~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++... ...+++.+...++.+++.|++|||
T Consensus 111 ----~~~~~lv~e~~~~~~L~~~i~~~~----~~~l~~~~~~~i~~~i~~~l~~lH 158 (302)
T cd05055 111 ----GGPILVITEYCCYGDLLNFLRRKR----ESFLTLEDLLSFSYQVAKGMAFLA 158 (302)
T ss_pred ----CCceEEEEEcCCCCcHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999997543 234899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-12 Score=125.04 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=65.7
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce---------------------------------eEEEeccccCCCceEEEEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
.......+++|+|+||.||||.+.+..| +++-..-+ ..+....||+
T Consensus 209 l~pl~l~eli~~Grfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t-~~~~eywLVt 287 (534)
T KOG3653|consen 209 LDPLQLLELIGRGRFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGT-ADRMEYWLVT 287 (534)
T ss_pred CCchhhHHHhhcCccceeehhhccCceeEEEecCHHHHHHHHhHHHHHhccCccchhHHHhhchhccCC-ccccceeEEe
Confidence 3345567789999999999999988776 11111100 0034689999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||.++|+|.+||+.. ..+|....+||..+|+||+|||
T Consensus 288 ~fh~kGsL~dyL~~n-------tisw~~~cria~SmarGLa~LH 324 (534)
T KOG3653|consen 288 EFHPKGSLCDYLKAN-------TISWNSLCRIAESMARGLAHLH 324 (534)
T ss_pred eeccCCcHHHHHHhc-------cccHHHHHHHHHHHHHHHHHhc
Confidence 999999999999975 4999999999999999999999
|
|
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.2e-12 Score=121.15 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=64.6
Q ss_pred ccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEEEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+.|.....||+|+||.||+|.+.++.. .+++ . ....++||
T Consensus 6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~-----~~~~~~v~ 79 (260)
T cd05069 6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVV-S-----EEPIYIVT 79 (260)
T ss_pred HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEE-c-----CCCcEEEE
Confidence 567788899999999999998765422 2222 2 45678999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.++++... ...++|..+..++.+++.|++|||
T Consensus 80 e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~al~~lH 119 (260)
T cd05069 80 EFMGKGSLLDFLKEGD----GKYLKLPQLVDMAAQIADGMAYIE 119 (260)
T ss_pred EcCCCCCHHHHHhhCC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997543 345889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=99.29 E-value=5e-12 Score=122.24 Aligned_cols=82 Identities=17% Similarity=0.324 Sum_probs=66.5
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..++|...+.||+|+||.||+|...++.. .++. . .+..++
T Consensus 4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~-----~~~~~~ 77 (260)
T cd05067 4 PRETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVV-T-----QEPIYI 77 (260)
T ss_pred chHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEE-c-----cCCcEE
Confidence 34678888999999999999999766543 1222 1 456799
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.+++.... ...+++.++..++.|++.|++|||
T Consensus 78 v~e~~~~~~L~~~~~~~~----~~~~~~~~~~~i~~~i~~al~~LH 119 (260)
T cd05067 78 ITEYMENGSLVDFLKTPE----GIKLTINKLIDMAAQIAEGMAFIE 119 (260)
T ss_pred EEEcCCCCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999987543 346889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-12 Score=125.31 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=65.1
Q ss_pred cccCcCCCccccCceecEEEEEeCCCc----------------e-----------------------------------e
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKW----------------T-----------------------------------A 422 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~----------------~-----------------------------------~ 422 (549)
.+.|...+.||+|+||.||+++..+.. + +
T Consensus 4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~ 83 (295)
T cd05097 4 RQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLL 83 (295)
T ss_pred hHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEE
Confidence 356788889999999999987653210 0 4
Q ss_pred EEEeccccCCCceEEEEEeecCCCCcccccccCCCC------CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 423 GYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNK------LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 423 g~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~------~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+++.. ....++||||+++|+|.+++...... .....++|..+++++.|+++|++|||
T Consensus 84 ~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH 146 (295)
T cd05097 84 GVCVS-----DDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLA 146 (295)
T ss_pred EEEcC-----CCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 55544 67789999999999999998643200 01134788999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.4e-12 Score=124.60 Aligned_cols=87 Identities=20% Similarity=0.312 Sum_probs=67.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc-------e-----------------------------------eEEEecccc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW-------T-----------------------------------AGYSEGTDF 430 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-------~-----------------------------------~g~~~~~~~ 430 (549)
..++|...+.||+|+||.||+|...+.. + ++++..
T Consensus 4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~--- 80 (277)
T cd05032 4 PREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVST--- 80 (277)
T ss_pred chHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcC---
Confidence 3467888899999999999999875322 1 345554
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCC----CCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKL----KPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~----~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++....... ....++|...+.++.|++.|+.|||
T Consensus 81 --~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH 136 (277)
T cd05032 81 --GQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLA 136 (277)
T ss_pred --CCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999997543100 1235789999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-12 Score=122.60 Aligned_cols=80 Identities=25% Similarity=0.413 Sum_probs=65.2
Q ss_pred ccCcCCCccccCceecEEEEEeCCCce--------------------------------eEEEeccccCCCceEEEEEee
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------AGYSEGTDFKGIDFKAVVFDY 442 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------~g~~~~~~~~~~~~~~lv~ey 442 (549)
++|...+.||+|+||.||+|...+..+ .+++. .+..++||||
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~iK~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~------~~~~~~v~e~ 79 (254)
T cd05083 6 QKLTLGEIIGEGEFGAVLQGEYTGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVIL------HNGLYIVMEL 79 (254)
T ss_pred HHceeeeeeccCCCCceEecccCCCceEEEeecCcchHHHHHHHHHHHHhCCCCCcCeEEEEEc------CCCcEEEEEC
Confidence 568888999999999999998765443 33333 2446899999
Q ss_pred cCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 443 MQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 443 ~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+++|+|.++++... ...+++..++.++.|++.|+.|||
T Consensus 80 ~~~~~L~~~l~~~~----~~~~~~~~~~~~~~qi~~al~~lH 117 (254)
T cd05083 80 MSKGNLVNFLRTRG----RALVSVIQLLQFSLDVAEGMEYLE 117 (254)
T ss_pred CCCCCHHHHHHhcC----cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999997543 345789999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki |
| >cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.6e-12 Score=122.97 Aligned_cols=82 Identities=20% Similarity=0.329 Sum_probs=64.2
Q ss_pred ccCcCCCccccCceecEEEEEeCCC-----ce------------------------------------eEEEeccccCCC
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEK-----WT------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~-----~~------------------------------------~g~~~~~~~~~~ 433 (549)
++|...+.||+|+||.||+|++... .. .+++.. .+.
T Consensus 4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~---~~~ 80 (284)
T cd05038 4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEK---PGG 80 (284)
T ss_pred hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeec---CCC
Confidence 3566778899999999999987422 11 233322 124
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++|+|.+++.... ..++|..++.++.|++.||+|||
T Consensus 81 ~~~~lv~e~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~~l~~aL~~lH 126 (284)
T cd05038 81 RSLRLIMEYLPSGSLRDYLQRHR-----DQINLKRLLLFSSQICKGMDYLG 126 (284)
T ss_pred CceEEEEecCCCCCHHHHHHhCc-----cccCHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999998643 35899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut |
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.3e-12 Score=122.82 Aligned_cols=81 Identities=15% Similarity=0.325 Sum_probs=62.7
Q ss_pred cCcCCCccccCceecEEEEEeCC-----Cc-e-----------------------------------eEEEeccccCCCc
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-----KW-T-----------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-----~~-~-----------------------------------~g~~~~~~~~~~~ 434 (549)
.|...+.||+|+||.||++.+.. +. + .+++... +..
T Consensus 5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~---~~~ 81 (284)
T cd05079 5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTED---GGN 81 (284)
T ss_pred hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecC---CCC
Confidence 45677889999999999998531 11 1 2344331 135
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... ..++|..++.++.|++.||+|||
T Consensus 82 ~~~lv~e~~~g~~L~~~l~~~~-----~~~~~~~~~~i~~~i~~aL~~lH 126 (284)
T cd05079 82 GIKLIMEFLPSGSLKEYLPRNK-----NKINLKQQLKYAVQICKGMDYLG 126 (284)
T ss_pred ceEEEEEccCCCCHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999997543 35899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a |
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.8e-12 Score=121.11 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=68.0
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce------------------------------------eEEEeccccCCCce
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------------------~g~~~~~~~~~~~~ 435 (549)
.+++++.....||+|+||.||+|...+... +|++.. .+.
T Consensus 5 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~ 79 (268)
T cd06624 5 YEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSE-----NGF 79 (268)
T ss_pred cccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeecc-----CCE
Confidence 467888888899999999999998654322 455555 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCC--chhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSL--SMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l--~~~~~~~ia~~va~gl~yLH 484 (549)
.++|+||+++++|.++++... ..+ ++..+..++.|+++|++|||
T Consensus 80 ~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~~qi~~al~~lH 125 (268)
T cd06624 80 FKIFMEQVPGGSLSALLRSKW-----GPLKDNEQTIIFYTKQILEGLKYLH 125 (268)
T ss_pred EEEEEecCCCCCHHHHHHHhc-----ccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998643 234 77788889999999999999
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.3e-12 Score=123.05 Aligned_cols=86 Identities=21% Similarity=0.343 Sum_probs=66.3
Q ss_pred cccCcCCCccccCceecEEEEEeCCC------c-e----------------------------------eEEEeccccCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEK------W-T----------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~------~-~----------------------------------~g~~~~~~~~~ 432 (549)
..++.....||+|+||.||++...+. . + .+++..
T Consensus 4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----- 78 (280)
T cd05092 4 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTE----- 78 (280)
T ss_pred hHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEec-----
Confidence 45677889999999999999964321 1 1 355555
Q ss_pred CceEEEEEeecCCCCcccccccCCC---------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNN---------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~---------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++.... ......++|..++.++.|++.|++|||
T Consensus 79 ~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH 139 (280)
T cd05092 79 GRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLA 139 (280)
T ss_pred CCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999975430 011235889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.9e-12 Score=113.40 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=71.8
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~~ 433 (549)
+-++|..++.||+|.||.||.|+.+.... +|++.+ .
T Consensus 20 ~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd-----~ 94 (281)
T KOG0580|consen 20 TLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHD-----S 94 (281)
T ss_pred chhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheec-----c
Confidence 45789999999999999999999765432 577777 7
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...||++||.++|++++.|+... ...++......+..|+|.|+.|+|
T Consensus 95 ~riyLilEya~~gel~k~L~~~~----~~~f~e~~~a~Yi~q~A~Al~y~h 141 (281)
T KOG0580|consen 95 KRIYLILEYAPRGELYKDLQEGR----MKRFDEQRAATYIKQLANALLYCH 141 (281)
T ss_pred ceeEEEEEecCCchHHHHHHhcc----cccccccchhHHHHHHHHHHHHhc
Confidence 88999999999999999999654 456888888899999999999999
|
|
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.5e-12 Score=123.33 Aligned_cols=86 Identities=22% Similarity=0.353 Sum_probs=67.3
Q ss_pred cccCcCCCccccCceecEEEEEeCCC------c-e-----------------------------------eEEEeccccC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEK------W-T-----------------------------------AGYSEGTDFK 431 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~------~-~-----------------------------------~g~~~~~~~~ 431 (549)
.++|...+.||+|+||.||+|...+. . + .+++..
T Consensus 4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~---- 79 (280)
T cd05049 4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTE---- 79 (280)
T ss_pred hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEec----
Confidence 45678888999999999999987433 1 1 344444
Q ss_pred CCceEEEEEeecCCCCcccccccCCC--------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNN--------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~--------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.++++.... ......+++.+...++.|++.|+.|||
T Consensus 80 -~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH 139 (280)
T cd05049 80 -GDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLA 139 (280)
T ss_pred -CCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999975431 112346889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=99.27 E-value=6e-12 Score=123.38 Aligned_cols=85 Identities=24% Similarity=0.344 Sum_probs=64.2
Q ss_pred ccCcCCCccccCceecEEEEEeC--C---Cce------------------------------------eEEEeccccCCC
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILG--E---KWT------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~--~---~~~------------------------------------~g~~~~~~~~~~ 433 (549)
++|...+.||+|+||.||+|.+. + +.. .+++.. .
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~ 79 (283)
T cd05090 5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQ-----E 79 (283)
T ss_pred hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEec-----C
Confidence 56777889999999999999852 1 111 344444 5
Q ss_pred ceEEEEEeecCCCCcccccccCCC-----------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNN-----------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~-----------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++|+|.+++..... +.....+++.+.+.++.|++.||+|||
T Consensus 80 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH 141 (283)
T cd05090 80 QPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLS 141 (283)
T ss_pred CceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999863320 001235788999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.9e-12 Score=135.50 Aligned_cols=143 Identities=18% Similarity=0.280 Sum_probs=104.2
Q ss_pred ccccCcCCCccccCceecEEEEEeCC---C----ce--------------------------------------eEEEec
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE---K----WT--------------------------------------AGYSEG 427 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~---~----~~--------------------------------------~g~~~~ 427 (549)
..+++...+.+|+|.||.|++|...+ + .. .|+|..
T Consensus 294 ~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~ 373 (609)
T KOG0200|consen 294 PRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQ 373 (609)
T ss_pred chhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeecc
Confidence 44455566689999999999998531 1 11 688887
Q ss_pred cccCCCceEEEEEeecCCCCcccccccCC---CCCC-----C--CCCchhhhHHHHHHHHHHHHHhh-------------
Q 039925 428 TDFKGIDFKAVVFDYMQNRSLEDWPYQSN---NKLK-----P--SSLSMIRKLSTTIDVASAIEYLR------------- 484 (549)
Q Consensus 428 ~~~~~~~~~~lv~ey~~~GsL~~~l~~~~---~~~~-----~--~~l~~~~~~~ia~~va~gl~yLH------------- 484 (549)
+...++|+||++.|+|.++|+..+ .-.. . ..++....+.+|.|||.||+||+
T Consensus 374 -----~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRN 448 (609)
T KOG0200|consen 374 -----DGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARN 448 (609)
T ss_pred -----CCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhh
Confidence 788999999999999999998654 0000 1 24888899999999999999998
Q ss_pred ---------------------------------------------------------------------ccccCCc----
Q 039925 485 ---------------------------------------------------------------------VKMALPE---- 491 (549)
Q Consensus 485 ---------------------------------------------------------------------~~~~~~~---- 491 (549)
....+++
T Consensus 449 VLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~ 528 (609)
T KOG0200|consen 449 VLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPT 528 (609)
T ss_pred EEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcH
Confidence 0001111
Q ss_pred -ceeeecc-CcccchHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 039925 492 -KVMEIVE-SSLLLEIEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHA 540 (549)
Q Consensus 492 -~~~~~~~-~~~~~~~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~ 540 (549)
.+.+.+. ......+..|..+++++|..||+.+|++||+|.++++.++..
T Consensus 529 ~~l~~~l~~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~ 579 (609)
T KOG0200|consen 529 EELLEFLKEGNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKH 579 (609)
T ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHH
Confidence 0001111 111233467889999999999999999999999999999884
|
|
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.7e-12 Score=123.46 Aligned_cols=86 Identities=17% Similarity=0.255 Sum_probs=65.3
Q ss_pred cccCcCCCccccCceecEEEEEeCCC-----------------c-e----------------------------------
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEK-----------------W-T---------------------------------- 421 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~-----------------~-~---------------------------------- 421 (549)
.++|...+.||+|+||.||++...+. . +
T Consensus 4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~ 83 (296)
T cd05095 4 RKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIR 83 (296)
T ss_pred hhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcce
Confidence 45688889999999999998753210 0 0
Q ss_pred -eEEEeccccCCCceEEEEEeecCCCCcccccccCCCC-----CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 422 -AGYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNK-----LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 422 -~g~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~-----~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++++.. .+..++||||+++|+|.+++...... .....+++.....++.|++.|++|||
T Consensus 84 ~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH 147 (296)
T cd05095 84 LLAVCIT-----SDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLS 147 (296)
T ss_pred EEEEEec-----CCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 344444 56789999999999999998764311 11235788899999999999999999
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-11 Score=120.58 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=66.7
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCceE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
..++|...+.||+|+||.||+|+... +.. .+++.. .+..
T Consensus 7 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~-----~~~~ 81 (267)
T cd06646 7 PQHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLS-----REKL 81 (267)
T ss_pred chhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEe-----CCEE
Confidence 45678899999999999999998743 222 344444 6778
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.++++... .+++..+..++.|++.|+.|||
T Consensus 82 ~iv~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH 123 (267)
T cd06646 82 WICMEYCGGGSLQDIYHVTG------PLSELQIAYVCRETLQGLAYLH 123 (267)
T ss_pred EEEEeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987543 5788999999999999999999
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.8e-12 Score=122.27 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=65.1
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cc-----e-----------------------------------eEEEeccccCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KW-----T-----------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~-----~-----------------------------------~g~~~~~~~~~ 432 (549)
.++|...+.||+|+||.||+|.+.+ +. + .|+|..
T Consensus 6 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----- 80 (279)
T cd05057 6 ETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS----- 80 (279)
T ss_pred HHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-----
Confidence 4567888899999999999998642 21 1 344442
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++|+|.++++... ..+++...+.++.|+++|++|||
T Consensus 81 -~~~~~v~e~~~~g~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~LH 126 (279)
T cd05057 81 -SQVQLITQLMPLGCLLDYVRNHK-----DNIGSQYLLNWCVQIAKGMSYLE 126 (279)
T ss_pred -CceEEEEecCCCCcHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999998643 35899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.4e-12 Score=120.69 Aligned_cols=81 Identities=27% Similarity=0.428 Sum_probs=66.1
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
..+|...+.||+|+||.||+|.+..+.. ++++.. ....++|
T Consensus 3 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~~v 77 (256)
T cd05112 3 PSELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTE-----RSPICLV 77 (256)
T ss_pred hhHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEcc-----CCceEEE
Confidence 3567778899999999999998753322 344444 5678999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.++++... ..++|.....++.+++.|++|||
T Consensus 78 ~e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lH 117 (256)
T cd05112 78 FEFMEHGCLSDYLRAQR-----GKFSQETLLGMCLDVCEGMAYLE 117 (256)
T ss_pred EEcCCCCcHHHHHHhCc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987543 35789999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ |
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.9e-12 Score=121.50 Aligned_cols=82 Identities=21% Similarity=0.243 Sum_probs=64.1
Q ss_pred cCcCCCccccCceecEEEEEeCC--Cce----------------------------------------------eEEEec
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE--KWT----------------------------------------------AGYSEG 427 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~--~~~----------------------------------------------~g~~~~ 427 (549)
+|...+.||+|+||.||+|.+.+ +.. ++++..
T Consensus 1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~ 80 (269)
T cd08528 1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE 80 (269)
T ss_pred CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence 46778899999999999999865 111 233333
Q ss_pred cccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 428 TDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 428 ~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++++|.+++.... .....+++..+++++.|++.||.|||
T Consensus 81 -----~~~~~lv~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~lh 130 (269)
T cd08528 81 -----NDRLYIVMDLIEGAPLGEHFNSLK--EKKQRFTEERIWNIFVQMVLALRYLH 130 (269)
T ss_pred -----CCeEEEEEecCCCCcHHHHHHHHH--hccCCCCHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999885422 01346888899999999999999999
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-11 Score=120.12 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=60.2
Q ss_pred CccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCCCceEEEEEe
Q 039925 401 NMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKGIDFKAVVFD 441 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~~~~~~lv~e 441 (549)
+.||+|+||.||+|.+.++.. +|++.. ....++|||
T Consensus 1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~lv~e 75 (269)
T cd05087 1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTE-----VTPYLLVME 75 (269)
T ss_pred CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC-----CCCcEEEEE
Confidence 358999999999998754321 455555 567899999
Q ss_pred ecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 442 YMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 442 y~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+++|+|.++++.... ......++.....++.|+++|++|||
T Consensus 76 ~~~~g~L~~~l~~~~~-~~~~~~~~~~~~~~~~qi~~al~~lH 117 (269)
T cd05087 76 FCPLGDLKGYLRSCRK-AELMTPDPTTLQRMACEIALGLLHLH 117 (269)
T ss_pred CCCCCcHHHHHHHhhh-cccccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999975431 11234677778899999999999999
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-11 Score=131.24 Aligned_cols=121 Identities=29% Similarity=0.450 Sum_probs=100.9
Q ss_pred cccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCC
Q 039925 224 TATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNL 303 (549)
Q Consensus 224 ~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 303 (549)
.++.|+|++|.+.+.+|..+..+ ++|+.|+|++|.++|.+ |..++.+++|+.|+|++|++++.+|..++++++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L--~~L~~L~Ls~N~l~g~i----P~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKL--RHLQSINLSGNSIRGNI----PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCC--CCCCEEECCCCcccCcC----ChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 37889999999999999999999 99999999999999877 5678999999999999999999999999999999
Q ss_pred CEEEccCCcccccCCCCCCCCCCCcccCCcccccccceeeecCCCCCCCCccccCcccCCC
Q 039925 304 MELSVSRNKLSASLPPLNSQHNHSFSCPGFEFSVIKLEFQIPGNKKLCGGLDELHLLSCHS 364 (549)
Q Consensus 304 ~~L~Ls~N~l~~~~p~~~ls~N~~~~ip~~~~~~l~l~~~~~gn~~~c~~~~~~~~~~~~~ 364 (549)
+.|+|++|+++|.+|.. +.. . +.. ...+.+.+|+.+|+.+. ...|..
T Consensus 493 ~~L~Ls~N~l~g~iP~~-l~~-----~----~~~-~~~l~~~~N~~lc~~p~---l~~C~~ 539 (623)
T PLN03150 493 RILNLNGNSLSGRVPAA-LGG-----R----LLH-RASFNFTDNAGLCGIPG---LRACGP 539 (623)
T ss_pred CEEECcCCcccccCChH-Hhh-----c----ccc-CceEEecCCccccCCCC---CCCCcc
Confidence 99999999999988864 110 0 000 11267899999998542 356754
|
|
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.8e-12 Score=125.37 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhh
Q 039925 509 LVSVLTIGILCSVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 509 ~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
..++.+++.+||+.+|++||++.||++.|+.+..
T Consensus 302 ~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~~ 335 (337)
T cd05054 302 TPEIYSIMLDCWHNNPEDRPTFSELVEILGDLLQ 335 (337)
T ss_pred CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 3567899999999999999999999999988754
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-11 Score=120.87 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=59.5
Q ss_pred cCCCccccCceecEEEEEeC-----CCce------------------------------------eEEEeccccCCCceE
Q 039925 398 SSSNMIGQGSFGSVYKGILG-----EKWT------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 398 ~~~~~lG~G~~g~Vy~~~~~-----~~~~------------------------------------~g~~~~~~~~~~~~~ 436 (549)
...+.||+|+||.||++.+. ++.. .+++... .....
T Consensus 7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---~~~~~ 83 (283)
T cd05080 7 KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQ---GGKGL 83 (283)
T ss_pred eeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC---CCceE
Confidence 66788999999999886542 1111 3444331 13457
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.+++... .++|.++..++.|+++|++|||
T Consensus 84 ~lv~e~~~~~~l~~~~~~~-------~l~~~~~~~i~~~l~~~l~~lH 124 (283)
T cd05080 84 QLIMEYVPLGSLRDYLPKH-------KLNLAQLLLFAQQICEGMAYLH 124 (283)
T ss_pred EEEecCCCCCCHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999753 4899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.9e-12 Score=123.86 Aligned_cols=81 Identities=25% Similarity=0.377 Sum_probs=64.9
Q ss_pred ccccCcCCCccccCceecEEEEEeC-CCc-----e-----------------------------------eEEEeccccC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILG-EKW-----T-----------------------------------AGYSEGTDFK 431 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~-----~-----------------------------------~g~~~~~~~~ 431 (549)
..++|...+.||+|+||.||+|.+. ++. + +|.|..
T Consensus 5 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~---- 80 (303)
T cd05110 5 KETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLS---- 80 (303)
T ss_pred chhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcC----
Confidence 4567888899999999999999863 221 1 444543
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....+++||+++|+|.+++.... ..+++...+.++.|+++||+|||
T Consensus 81 --~~~~~v~e~~~~g~l~~~~~~~~-----~~~~~~~~~~~~~qi~~~L~~LH 126 (303)
T cd05110 81 --PTIQLVTQLMPHGCLLDYVHEHK-----DNIGSQLLLNWCVQIAKGMMYLE 126 (303)
T ss_pred --CCceeeehhcCCCCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHh
Confidence 34678999999999999987643 35888999999999999999999
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-11 Score=119.94 Aligned_cols=79 Identities=24% Similarity=0.415 Sum_probs=61.5
Q ss_pred CccccCceecEEEEEeCCCc--------e-----------------------------------eEEEeccccCCCceEE
Q 039925 401 NMIGQGSFGSVYKGILGEKW--------T-----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~--------~-----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+.||+|+||.||+|...+.. + .++|.. .+..+
T Consensus 1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 75 (269)
T cd05044 1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLL-----NEPQY 75 (269)
T ss_pred CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecC-----CCCeE
Confidence 36999999999999874311 1 345554 56789
Q ss_pred EEEeecCCCCcccccccCCCCC-CCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKL-KPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~-~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.++++...... ....++|.+++.++.|++.|++|||
T Consensus 76 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH 123 (269)
T cd05044 76 IIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLE 123 (269)
T ss_pred EEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997543111 2345889999999999999999999
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-11 Score=121.26 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=67.2
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc------------------e---------------------------------
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW------------------T--------------------------------- 421 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~------------------~--------------------------------- 421 (549)
+.++|...+.||+|+||.||+|...+.. +
T Consensus 3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~ 82 (296)
T cd05051 3 PRQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIA 82 (296)
T ss_pred chhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEe
Confidence 3567888999999999999998764311 0
Q ss_pred --eEEEeccccCCCceEEEEEeecCCCCcccccccCCCC-----CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 422 --AGYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNK-----LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 422 --~g~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~-----~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+++.. .+..++||||+++|+|.+++...... .....+++...+.++.|+++|++|||
T Consensus 83 ~~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH 147 (296)
T cd05051 83 RLLGVCTV-----DPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLE 147 (296)
T ss_pred EEEEEEec-----CCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344444 57789999999999999998754310 01236899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=119.06 Aligned_cols=81 Identities=14% Similarity=0.288 Sum_probs=64.9
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
.+.|...+.||+|+||.||+|.+.++.. .+.+. ....+++
T Consensus 5 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~------~~~~~~v 78 (260)
T cd05073 5 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT------KEPIYII 78 (260)
T ss_pred ccceeEEeEecCccceEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEc------CCCeEEE
Confidence 4568888999999999999998754432 12222 2467899
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.+++.... ...++|..++.++.+++.|++|||
T Consensus 79 ~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~aL~~lH 119 (260)
T cd05073 79 TEFMAKGSLLDFLKSDE----GSKQPLPKLIDFSAQIAEGMAFIE 119 (260)
T ss_pred EEeCCCCcHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997643 346889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-11 Score=118.64 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=58.7
Q ss_pred ccccCceecEEEEEeCCCc-e--------------------------------------eEEEeccccCCCceEEEEEee
Q 039925 402 MIGQGSFGSVYKGILGEKW-T--------------------------------------AGYSEGTDFKGIDFKAVVFDY 442 (549)
Q Consensus 402 ~lG~G~~g~Vy~~~~~~~~-~--------------------------------------~g~~~~~~~~~~~~~~lv~ey 442 (549)
.||+|+||.||+|...++. . .+.|.. ....++||||
T Consensus 2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~-----~~~~~lv~e~ 76 (268)
T cd05086 2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVE-----AIPYLLVFEY 76 (268)
T ss_pred cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecC-----CCccEEEEec
Confidence 5999999999999754322 1 345554 5678999999
Q ss_pred cCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 443 MQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 443 ~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+++|+|.++++.... .....++.....++.|+|+||+|||
T Consensus 77 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~~~~~i~~al~~lH 116 (268)
T cd05086 77 CELGDLKSYLSQEQW--HRRNSQLLLLQRMACEIAAGVTHMH 116 (268)
T ss_pred CCCCcHHHHHHhhhc--ccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999986431 1234566677889999999999999
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage |
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-12 Score=122.82 Aligned_cols=85 Identities=21% Similarity=0.318 Sum_probs=64.0
Q ss_pred ccCcCCCccccCceecEEEEEeCCC------c-e-----------------------------------eEEEeccccCC
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEK------W-T-----------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~------~-~-----------------------------------~g~~~~~~~~~ 432 (549)
.+|...+.||+|+||.||+|...+. . + .+++..
T Consensus 5 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~----- 79 (283)
T cd05091 5 STVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTK----- 79 (283)
T ss_pred HHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-----
Confidence 3566677899999999999986432 1 1 455555
Q ss_pred CceEEEEEeecCCCCcccccccCCC----------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNN----------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~----------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++++||+++++|.+++..+.. ......+++..+.+++.|+++||+|||
T Consensus 80 ~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH 141 (283)
T cd05091 80 EQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLS 141 (283)
T ss_pred CCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999853210 011235788889999999999999999
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-11 Score=118.68 Aligned_cols=80 Identities=13% Similarity=0.109 Sum_probs=63.5
Q ss_pred cCcCCCccccCceecEEEEEeCCCc-e------------------------------------eEEEeccccCCCceEEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKW-T------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~-~------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
+|...+.||+|+||.||++...... . .+++.. .+..++
T Consensus 1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~l 75 (255)
T cd08219 1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEA-----DGHLYI 75 (255)
T ss_pred CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEE-----CCEEEE
Confidence 4666788999999999999864322 1 234444 678899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.+++.... ...+++...+.++.++++||.|||
T Consensus 76 v~e~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~i~~al~~lH 117 (255)
T cd08219 76 VMEYCDGGDLMQKIKLQR----GKLFPEDTILQWFVQMCLGVQHIH 117 (255)
T ss_pred EEeeCCCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999987533 245788888999999999999999
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-11 Score=119.71 Aligned_cols=89 Identities=18% Similarity=0.211 Sum_probs=68.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce------------------------------------eEEEeccccCC-Cc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT------------------------------------AGYSEGTDFKG-ID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------------------~g~~~~~~~~~-~~ 434 (549)
.+++.|...+.||+|+||.||+|...+... .+++......+ ..
T Consensus 3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~ 82 (272)
T cd06637 3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDD 82 (272)
T ss_pred ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCc
Confidence 467788889999999999999998754321 34443211111 24
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... ...++|.....++.|++.|++|||
T Consensus 83 ~~~iv~e~~~~~~L~~~l~~~~----~~~l~~~~~~~~~~qi~~~l~~LH 128 (272)
T cd06637 83 QLWLVMEFCGAGSVTDLIKNTK----GNTLKEEWIAYICREILRGLSHLH 128 (272)
T ss_pred EEEEEEEcCCCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999988643 246889999999999999999999
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-11 Score=119.89 Aligned_cols=85 Identities=19% Similarity=0.332 Sum_probs=66.5
Q ss_pred ccCcCCCccccCceecEEEEEeCCCc-------e-----------------------------------eEEEeccccCC
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKW-------T-----------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~-------~-----------------------------------~g~~~~~~~~~ 432 (549)
++|.....||+|+||.||+|+..... + ++++..
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----- 79 (275)
T cd05046 5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCRE----- 79 (275)
T ss_pred HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECC-----
Confidence 57888899999999999999864211 1 344444
Q ss_pred CceEEEEEeecCCCCcccccccCCCCC---CCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKL---KPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~---~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++...... ....+++..+..++.|+++|++|||
T Consensus 80 ~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH 134 (275)
T cd05046 80 AEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLS 134 (275)
T ss_pred CCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhh
Confidence 567899999999999999997543100 1126899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s |
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-11 Score=119.01 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=64.6
Q ss_pred cCcCCCccccCceecEEEEEeCCCc-e-------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKW-T-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~-~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+|...+.||+|+||.||+|...... . .+.+.. ....+
T Consensus 1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~-----~~~~~ 75 (257)
T cd08225 1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQE-----NGRLF 75 (257)
T ss_pred CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheecc-----CCeEE
Confidence 3667788999999999999985422 1 233443 56789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|+||+++++|.+++.... ...++|..+..++.|+++|+.|||
T Consensus 76 lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~lh 118 (257)
T cd08225 76 IVMEYCDGGDLMKRINRQR----GVLFSEDQILSWFVQISLGLKHIH 118 (257)
T ss_pred EEEecCCCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997543 245799999999999999999999
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.2e-11 Score=116.32 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=63.8
Q ss_pred ccCcCCCccccCceecEEEEEeCCC-ce------------------------------------eEEEeccccCCCceEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEK-WT------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~-~~------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
..|...+.||+|+||.||+|..... .. .+++.. ....+
T Consensus 4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 78 (277)
T cd06640 4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-----GTKLW 78 (277)
T ss_pred HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----CCEEE
Confidence 3566778899999999999987542 21 344554 67899
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++... .+++.....++.+++.|++|||
T Consensus 79 lv~e~~~~~~L~~~i~~~-------~l~~~~~~~~~~~l~~~l~~lh 118 (277)
T cd06640 79 IIMEYLGGGSALDLLRAG-------PFDEFQIATMLKEILKGLDYLH 118 (277)
T ss_pred EEEecCCCCcHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998743 4788888999999999999999
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-11 Score=119.50 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=66.1
Q ss_pred ccCcCCCccccCceecEEEEEeCCC-ce------------------------------------eEEEeccccCCCceEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEK-WT------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~-~~------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
++|...+.||+|+||.||++..... .+ ++++.. .+..+
T Consensus 1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~ 75 (308)
T cd06615 1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYS-----DGEIS 75 (308)
T ss_pred CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee-----CCEEE
Confidence 4688889999999999999986532 21 455655 67899
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.++++... .+++.....++.|+++||.|||
T Consensus 76 lv~ey~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~~l~~lH 116 (308)
T cd06615 76 ICMEHMDGGSLDQVLKKAG------RIPENILGKISIAVLRGLTYLR 116 (308)
T ss_pred EEeeccCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997543 5788888999999999999999
|
Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down |
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-11 Score=116.85 Aligned_cols=79 Identities=34% Similarity=0.500 Sum_probs=62.2
Q ss_pred CccccCceecEEEEEeCCC---c--e-----------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEK---W--T-----------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~---~--~-----------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+.||+|+||.||+|...+. . + .+++.. ....++||
T Consensus 1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~~~lv~ 75 (262)
T cd00192 1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTE-----EEPLYLVL 75 (262)
T ss_pred CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecC-----CCceEEEE
Confidence 4699999999999998643 1 1 344444 67789999
Q ss_pred eecCCCCcccccccCCCC---CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNK---LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~---~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.+++...... .....+++..+..++.++++|++|||
T Consensus 76 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH 122 (262)
T cd00192 76 EYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLA 122 (262)
T ss_pred EeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999865200 01256899999999999999999999
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-11 Score=116.40 Aligned_cols=82 Identities=29% Similarity=0.409 Sum_probs=70.3
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce--------------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------~g~~~~~~~~~~ 433 (549)
..-++|...+.||+|+||+||+|+.+.... +.++.. .
T Consensus 7 ~~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~-----~ 81 (429)
T KOG0595|consen 7 RVVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIED-----D 81 (429)
T ss_pred cccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEec-----C
Confidence 345688888899999999999999864332 345555 7
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++.++|||||.+|+|.+||+.++ .++......+..|+|.||+|||
T Consensus 82 ~~i~lVMEyC~gGDLs~yi~~~~------~l~e~t~r~Fm~QLA~alq~L~ 126 (429)
T KOG0595|consen 82 DFIYLVMEYCNGGDLSDYIRRRG------RLPEATARHFMQQLASALQFLH 126 (429)
T ss_pred CeEEEEEEeCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999764 6889999999999999999999
|
|
| >cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-11 Score=117.21 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=63.4
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
.|...+.||+|+||.||++.... +.. .+++.. .+..+
T Consensus 1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~ 75 (256)
T cd08218 1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEE-----NGNLY 75 (256)
T ss_pred CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecC-----CCeEE
Confidence 36677889999999999988643 221 233333 67889
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++.... ...+++.+.++++.|++.|+.|||
T Consensus 76 lv~e~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~lh 118 (256)
T cd08218 76 IVMDYCEGGDLYKKINAQR----GVLFPEDQILDWFVQICLALKHVH 118 (256)
T ss_pred EEEecCCCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987543 235788899999999999999999
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti |
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-11 Score=118.79 Aligned_cols=77 Identities=25% Similarity=0.318 Sum_probs=62.2
Q ss_pred cCcCCCccccCceecEEEEEeCCC-ce------------------------------------eEEEeccccCCCceEEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEK-WT------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~-~~------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
.|...+.||+|+||.||+|..... .. .+++.. ....++
T Consensus 5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~l 79 (277)
T cd06642 5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLK-----GTKLWI 79 (277)
T ss_pred HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhccccc-----CCceEE
Confidence 355667899999999999987532 21 233443 667899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.+++... .+++.....++.|+++|+.|||
T Consensus 80 v~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~~i~~~l~~lH 118 (277)
T cd06642 80 IMEYLGGGSALDLLKPG-------PLEETYIATILREILKGLDYLH 118 (277)
T ss_pred EEEccCCCcHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998643 4889999999999999999999
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-11 Score=122.45 Aligned_cols=79 Identities=14% Similarity=0.228 Sum_probs=69.7
Q ss_pred ccCcCCCccccCceecEEEEEe-CCCce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGIL-GEKWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
..|..+++||+|||+.||+++. ..|.+ ++++.+ .+.
T Consensus 18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FED-----s~n 92 (592)
T KOG0575|consen 18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFED-----SNN 92 (592)
T ss_pred ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeec-----CCc
Confidence 4588999999999999999997 55554 466766 789
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.|+|.|+|++|+|..+++.. .++++.....+.+||+.||.|||
T Consensus 93 VYivLELC~~~sL~el~Krr------k~ltEpEary~l~QIv~GlkYLH 135 (592)
T KOG0575|consen 93 VYIVLELCHRGSLMELLKRR------KPLTEPEARYFLRQIVEGLKYLH 135 (592)
T ss_pred eEEEEEecCCccHHHHHHhc------CCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999854 47999999999999999999999
|
|
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-11 Score=116.62 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=63.3
Q ss_pred cCcCCCccccCceecEEEEEeCCCce--------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+|...+.||+|+||.||++....... .+.+.. .+..+
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~~~ 75 (256)
T cd08220 1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLE-----DKALM 75 (256)
T ss_pred CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEec-----CCEEE
Confidence 36667889999999999988643221 222222 56789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++.... ...+++..+..++.++++|+.|||
T Consensus 76 lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lh 118 (256)
T cd08220 76 IVMEYAPGGTLAEYIQKRC----NSLLDEDTILHFFVQILLALHHVH 118 (256)
T ss_pred EEEecCCCCCHHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997643 345889999999999999999999
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.9e-11 Score=120.47 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=66.9
Q ss_pred cccCcCCCccccCceecEEEEEeCCCc-e------------------------------------eEEEeccccCCCceE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKW-T------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~------------------------------------~g~~~~~~~~~~~~~ 436 (549)
.++|...+.||+|+||.||+++..... . ++++.. .+..
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~ 78 (331)
T cd06649 4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-----DGEI 78 (331)
T ss_pred cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-----CCEE
Confidence 467888899999999999999875322 1 455555 6788
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.++++... .+++.....++.++++|+.|||
T Consensus 79 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~~l~~lH 120 (331)
T cd06649 79 SICMEHMDGGSLDQVLKEAK------RIPEEILGKVSIAVLRGLAYLR 120 (331)
T ss_pred EEEeecCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999997543 5788888999999999999999
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-11 Score=121.06 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=68.0
Q ss_pred ccccCcCCCccccCceecEEEEEeCCC-ce------------------------------------eEEEeccccCCCce
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEK-WT------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~------------------------------------~g~~~~~~~~~~~~ 435 (549)
..++|...+.||+|+||.||++..... .+ ++++.. .+.
T Consensus 3 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~ 77 (333)
T cd06650 3 KDDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-----DGE 77 (333)
T ss_pred chhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEE-----CCE
Confidence 346889999999999999999987532 22 466666 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... .+++.....++.++++||+|||
T Consensus 78 ~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~l~~~l~~lH 120 (333)
T cd06650 78 ISICMEHMDGGSLDQVLKKAG------RIPEQILGKVSIAVIKGLTYLR 120 (333)
T ss_pred EEEEEecCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997543 5788888899999999999999
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.3e-11 Score=116.30 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=59.6
Q ss_pred ccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCCCceEEEEEee
Q 039925 402 MIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKGIDFKAVVFDY 442 (549)
Q Consensus 402 ~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~~~~~~lv~ey 442 (549)
.||+|+||.||+|...++.. +|+|.. ....++||||
T Consensus 2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~-----~~~~~lv~e~ 76 (269)
T cd05042 2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIE-----SIPYLLVLEF 76 (269)
T ss_pred cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECC-----CCceEEEEEe
Confidence 59999999999997533211 455555 6778999999
Q ss_pred cCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 443 MQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 443 ~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+++|+|.+++..... ......++.....++.|+++|++|||
T Consensus 77 ~~~g~L~~~l~~~~~-~~~~~~~~~~~~~~~~qi~~~l~~lH 117 (269)
T cd05042 77 CPLGDLKNYLRSNRG-MVAQMAQKDVLQRMACEVASGLLWLH 117 (269)
T ss_pred CCCCcHHHHHHhccc-cccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999976541 11234567778899999999999999
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina |
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.2e-11 Score=116.31 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=69.0
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-e-----------------------------------eEEEeccccCCCce
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-T-----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~-----------------------------------~g~~~~~~~~~~~~ 435 (549)
.++++|...+.||+|+||.||+|...... . ++++........+.
T Consensus 15 ~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~ 94 (286)
T cd06638 15 DPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQ 94 (286)
T ss_pred CcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCe
Confidence 58889999999999999999999874322 1 34443222223457
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... .....+++.....++.|+++|+.|||
T Consensus 95 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~~~i~~~l~~lH 141 (286)
T cd06638 95 LWLVLELCNGGSVTDLVKGFL--KRGERMEEPIIAYILHEALMGLQHLH 141 (286)
T ss_pred EEEEEeecCCCCHHHHHHHhh--ccCccccHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999886422 01246788888999999999999999
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-11 Score=119.15 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=65.6
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~ 436 (549)
.++|...+.||+|+||.||++.... +.. .+++.. ....
T Consensus 4 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~ 78 (284)
T cd06620 4 NEDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLN-----ENNI 78 (284)
T ss_pred HHHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEec-----CCEE
Confidence 3567778899999999999998753 322 344544 5778
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.++++..+ .+++.....++.++++|+.|||
T Consensus 79 ~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~~i~~~l~~LH 120 (284)
T cd06620 79 CMCMEFMDCGSLDRIYKKGG------PIPVEILGKIAVAVVEGLTYLY 120 (284)
T ss_pred EEEEecCCCCCHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987543 5889999999999999999998
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.2e-11 Score=114.36 Aligned_cols=74 Identities=28% Similarity=0.485 Sum_probs=60.6
Q ss_pred CccccCceecEEEEEeCCCce------------------------------------eEEEeccccCCCceEEEEEeecC
Q 039925 401 NMIGQGSFGSVYKGILGEKWT------------------------------------AGYSEGTDFKGIDFKAVVFDYMQ 444 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~~------------------------------------~g~~~~~~~~~~~~~~lv~ey~~ 444 (549)
+.||+|+||.||++...++.. .+++.. ....++||||++
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~~v~e~~~ 75 (251)
T cd05041 1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQ-----KQPIYIVMELVP 75 (251)
T ss_pred CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEec-----CCCeEEEEEcCC
Confidence 369999999999998764332 344444 567899999999
Q ss_pred CCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 445 NRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 445 ~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+++|.++++... ..+++...+.++.+++.|++|||
T Consensus 76 ~~~l~~~l~~~~-----~~~~~~~~~~~~~~~~~~l~~lH 110 (251)
T cd05041 76 GGSLLTFLRKKK-----NRLTVKKLLQMSLDAAAGMEYLE 110 (251)
T ss_pred CCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999997543 35788899999999999999999
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.2e-11 Score=115.45 Aligned_cols=78 Identities=17% Similarity=0.331 Sum_probs=64.6
Q ss_pred cCcCCCccccCceecEEEEEeCCCce-----------------------------------------eEEEeccccCCCc
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------------~g~~~~~~~~~~~ 434 (549)
+|...+.||+|+||.||+|...++.. .++|.. .+
T Consensus 1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~ 75 (265)
T cd06631 1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLD-----DN 75 (265)
T ss_pred CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeec-----CC
Confidence 46778899999999999998755442 344544 57
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... .+++.....++.|++.|++|||
T Consensus 76 ~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH 119 (265)
T cd06631 76 TISIFMEFVPGGSISSILNRFG------PLPEPVFCKYTKQILDGVAYLH 119 (265)
T ss_pred eEEEEEecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999997543 5788888999999999999999
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.3e-11 Score=123.14 Aligned_cols=192 Identities=28% Similarity=0.332 Sum_probs=132.3
Q ss_pred EEEccCCcceecCCccccCCCCCCEeecccccccccCCccccccc-CccceeeecccccccccccccCCCCCCCEEEeec
Q 039925 61 FINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCS-NLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKE 139 (549)
Q Consensus 61 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (549)
.+++..|.+. .....+..++.++.|++.+|.++ .+|.....+. +| +.|++++|.+. .+|..++.+++|+.|++++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL-~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNL-KELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhc-ccccccccchh-hhhhhhhccccccccccCC
Confidence 5777777774 23344566688999999999998 7887777774 88 99999999987 4556778899999999999
Q ss_pred ceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeeccccccccc
Q 039925 140 NSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYW 218 (549)
Q Consensus 140 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~ 218 (549)
|++. .+|.....+++|+.|++++|++. .+|....... |++|.+++|... ..+..+. ++.++
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~-~~~~l-------------- 234 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS-NLKNL-------------- 234 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh-hcccc--------------
Confidence 9998 67776668889999999999988 6676666666 899999998644 3444443 44433
Q ss_pred ccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCcccc
Q 039925 219 SDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQ 290 (549)
Q Consensus 219 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (549)
..+.+.+|++.. .+..+..+ ++++.|++++|.++ .+ +. ++.+.+++.|++++|.+.
T Consensus 235 -------~~l~l~~n~~~~-~~~~~~~l--~~l~~L~~s~n~i~-~i----~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 235 -------SGLELSNNKLED-LPESIGNL--SNLETLDLSNNQIS-SI----SS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred -------cccccCCceeee-ccchhccc--cccceecccccccc-cc----cc-ccccCccCEEeccCcccc
Confidence 334444554442 23444555 55666666666665 22 22 555666666666666555
|
|
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.7e-11 Score=113.12 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=68.1
Q ss_pred cccCcCCCccccCceecEEEEEeCCC-ce---------------------------------eEEEeccccCCCceEEEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEK-WT---------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~---------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
.++|...+.||+|+||.||+|.+.+. .. .|.+.. ....+++
T Consensus 2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-----~~~~~l~ 76 (256)
T cd06612 2 EEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYYGSYFK-----NTDLWIV 76 (256)
T ss_pred cccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHHHHHHHHHHHHHHhCCCCcEeeeeeeeec-----CCcEEEE
Confidence 46788899999999999999998652 22 345555 6788999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||+++++|.+++.... ..++|.....++.|+++|+.|||
T Consensus 77 ~e~~~~~~L~~~l~~~~-----~~l~~~~~~~~~~~l~~~l~~lh 116 (256)
T cd06612 77 MEYCGAGSVSDIMKITN-----KTLTEEEIAAILYQTLKGLEYLH 116 (256)
T ss_pred EecCCCCcHHHHHHhCc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997543 46899999999999999999999
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.5e-11 Score=115.62 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=62.8
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceEEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
-|...+.||+|+||.||+|.... +.. ++++.. ....++
T Consensus 5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~~l 79 (277)
T cd06641 5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-----DTKLWI 79 (277)
T ss_pred hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEe-----CCeEEE
Confidence 35667789999999999998643 222 344444 677899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.+++... .+++.....++.+++.|+.|||
T Consensus 80 v~e~~~~~~l~~~i~~~-------~~~~~~~~~~~~~l~~~l~~lh 118 (277)
T cd06641 80 IMEYLGGGSALDLLEPG-------PLDETQIATILREILKGLDYLH 118 (277)
T ss_pred EEEeCCCCcHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHc
Confidence 99999999999998743 4789999999999999999999
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int |
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.8e-11 Score=123.43 Aligned_cols=146 Identities=13% Similarity=0.146 Sum_probs=107.0
Q ss_pred ccccCcCCCccccCceecEEEEEeCCC-ce---------------------------------eEEEe-ccc---cCC-C
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEK-WT---------------------------------AGYSE-GTD---FKG-I 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~---------------------------------~g~~~-~~~---~~~-~ 433 (549)
..-.+...++|.+|||+.||.|....+ .. ++|+. .+. ..+ .
T Consensus 35 g~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~ 114 (738)
T KOG1989|consen 35 GSHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGV 114 (738)
T ss_pred CCEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCce
Confidence 445667788999999999999997655 21 45554 211 112 3
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh-----------------------------
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR----------------------------- 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH----------------------------- 484 (549)
-+.+|.||||++|+|-+++..+. ...|+....++|+.|+|+|+++||
T Consensus 115 ~EvllLmEyC~gg~Lvd~mn~Rl----q~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDF 190 (738)
T KOG1989|consen 115 WEVLLLMEYCKGGSLVDFMNTRL----QTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDF 190 (738)
T ss_pred eEEEeehhhccCCcHHHHHHHHH----hccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCcc
Confidence 46789999999999999998554 234999999999999999999999
Q ss_pred ---------------------------------------------------------------ccccCCcc-eeeeccCc
Q 039925 485 ---------------------------------------------------------------VKMALPEK-VMEIVESS 500 (549)
Q Consensus 485 ---------------------------------------------------------------~~~~~~~~-~~~~~~~~ 500 (549)
....+.+. -..|++..
T Consensus 191 GSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~laIlng~ 270 (738)
T KOG1989|consen 191 GSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLAILNGN 270 (738)
T ss_pred cccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcceeEEecc
Confidence 11111221 33444443
Q ss_pred cc-chHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhh
Q 039925 501 LL-LEIEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 501 ~~-~~~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
.. +..+.....+.+|+..|++.+|++||+..+|...+-+++.
T Consensus 271 Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~ 313 (738)
T KOG1989|consen 271 YSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELAN 313 (738)
T ss_pred ccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhc
Confidence 32 2225677889999999999999999999999998888764
|
|
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-11 Score=117.79 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=63.1
Q ss_pred CcCCCccccCceecEEEEEeC-CCce--------------------------------------eEEEeccccCCCceEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILG-EKWT--------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~-~~~~--------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
|...+.||+|+||.||+|... ++.. .+++.. .+..+
T Consensus 2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~-----~~~~~ 76 (285)
T cd05631 2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYET-----KDALC 76 (285)
T ss_pred ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEcc-----CCeEE
Confidence 566788999999999999864 3322 233333 56789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++.... ...+++..+..++.|++.|++|||
T Consensus 77 lv~e~~~~g~L~~~~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH 119 (285)
T cd05631 77 LVLTIMNGGDLKFHIYNMG----NPGFDEQRAIFYAAELCCGLEDLQ 119 (285)
T ss_pred EEEEecCCCcHHHHHHhhC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998886433 235889999999999999999999
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.4e-11 Score=114.86 Aligned_cols=88 Identities=30% Similarity=0.476 Sum_probs=59.5
Q ss_pred CcCCCccccCceecEEEEEeCCC----c-e------------------------------------eEEEeccccCC-Cc
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEK----W-T------------------------------------AGYSEGTDFKG-ID 434 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~----~-~------------------------------------~g~~~~~~~~~-~~ 434 (549)
|...++||+|+||.||+|.+... . + .+++......+ ..
T Consensus 1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~ 80 (273)
T cd05074 1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP 80 (273)
T ss_pred CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence 45677899999999999986421 1 1 23332210000 11
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++++||+++|+|.+++...........+++...+.++.|++.|++|||
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH 130 (273)
T cd05074 81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLS 130 (273)
T ss_pred ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999988753321111235788889999999999999999
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.9e-11 Score=115.57 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=65.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCce
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~ 435 (549)
.....|...+.||+|+||.||+|+... +.. .+.+.. ...
T Consensus 17 ~~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~-----~~~ 91 (296)
T cd06654 17 DPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-----GDE 91 (296)
T ss_pred CcccceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEe-----CCE
Confidence 345578888899999999999998643 221 344444 668
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++.. .+++.+...++.|++.|++|||
T Consensus 92 ~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~i~~ql~~aL~~LH 133 (296)
T cd06654 92 LWVVMEYLAGGSLTDVVTET-------CMDEGQIAAVCRECLQALEFLH 133 (296)
T ss_pred EEEeecccCCCCHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998643 4788999999999999999999
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.9e-11 Score=112.81 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=64.0
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+|+..+.||+|+||.||.+.... +.. .+++.. .+..+
T Consensus 1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~~~~ 75 (256)
T cd08221 1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMD-----DNTLL 75 (256)
T ss_pred CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEec-----CCeEE
Confidence 36677899999999998877533 211 344544 67789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++.... ...+++.+...++.|+++|++|||
T Consensus 76 ~~~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~lh 118 (256)
T cd08221 76 IEMEYANGGTLYDKIVRQK----GQLFEEEMVLWYLFQIVSAVSYIH 118 (256)
T ss_pred EEEEecCCCcHHHHHHhcc----ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998643 246889999999999999999999
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-11 Score=118.99 Aligned_cols=80 Identities=25% Similarity=0.312 Sum_probs=62.2
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~ 436 (549)
..-|+..+.||+|+||.||||.... +++ +|.+.. ...+
T Consensus 12 ~~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~-----g~~L 86 (467)
T KOG0201|consen 12 ELLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLK-----GTKL 86 (467)
T ss_pred ccccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheee-----cccH
Confidence 3457777899999999999998643 222 333333 5677
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+++||||.+|++.+.|+... .++.....-|.+++..|+.|||
T Consensus 87 wiiMey~~gGsv~~lL~~~~------~~~E~~i~~ilre~l~~l~ylH 128 (467)
T KOG0201|consen 87 WIIMEYCGGGSVLDLLKSGN------ILDEFEIAVILREVLKGLDYLH 128 (467)
T ss_pred HHHHHHhcCcchhhhhccCC------CCccceeeeehHHHHHHhhhhh
Confidence 89999999999999998654 3466666668899999999999
|
|
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-10 Score=115.13 Aligned_cols=91 Identities=15% Similarity=0.067 Sum_probs=69.2
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCce
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~ 435 (549)
.++++|...+.||+|+||.||++...+ +.. .+++...+......
T Consensus 19 ~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~ 98 (291)
T cd06639 19 DPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQ 98 (291)
T ss_pred CCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCe
Confidence 678899999999999999999998743 221 34443322112346
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... .....++|..+..++.|++.||+|||
T Consensus 99 ~~lv~ey~~~~sL~~~~~~~~--~~~~~~~~~~~~~~~~qi~~al~~lH 145 (291)
T cd06639 99 LWLVLELCNGGSVTELVKGLL--ICGQRLDEAMISYILYGALLGLQHLH 145 (291)
T ss_pred eEEEEEECCCCcHHHHHHHhh--hcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999886422 11346889999999999999999999
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-10 Score=112.51 Aligned_cols=73 Identities=29% Similarity=0.473 Sum_probs=59.2
Q ss_pred CccccCceecEEEEEeCCCc------------e---------------------------------eEEEeccccCCCce
Q 039925 401 NMIGQGSFGSVYKGILGEKW------------T---------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~------------~---------------------------------~g~~~~~~~~~~~~ 435 (549)
+.||+|+||.||+|.+.+.. + .|+|.. ..
T Consensus 1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------~~ 74 (259)
T cd05037 1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVR------DE 74 (259)
T ss_pred CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEec------CC
Confidence 36899999999999986433 1 344432 35
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... ..+++..++.++.|++.||.|||
T Consensus 75 ~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~i~~~l~~LH 118 (259)
T cd05037 75 NIMVEEYVKFGPLDVFLHREK-----NNVSLHWKLDVAKQLASALHYLE 118 (259)
T ss_pred cEEEEEcCCCCcHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999998643 26889999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki |
| >cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11 | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.7e-11 Score=115.35 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=62.0
Q ss_pred CcCCCccccCceecEEEEEeCCCce-----------------------------------------eEEEeccccCCCce
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------------~g~~~~~~~~~~~~ 435 (549)
|...+.||+|+||.||++....... .+++.. .+.
T Consensus 2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 76 (260)
T cd08222 2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLE-----RDA 76 (260)
T ss_pred ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhc-----CCc
Confidence 5667889999999999998653211 111211 456
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++++|.++++... .....+++.....++.|+++|+.|||
T Consensus 77 ~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~lH 123 (260)
T cd08222 77 FCIITEYCEGRDLDCKLEELK--HTGKTLSENQVCEWFIQLLLGVHYMH 123 (260)
T ss_pred eEEEEEeCCCCCHHHHHHHHh--hcccccCHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999987432 12356899999999999999999999
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check |
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.4e-11 Score=116.75 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=62.9
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCceEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
|...+.||+|+||.||++.... +.. .+.+.. ++..+
T Consensus 2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~ 76 (285)
T cd05605 2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYET-----KDALC 76 (285)
T ss_pred ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecC-----CCeEE
Confidence 5667889999999999998642 221 223333 56789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++.... ...+++.....++.|++.|+.|||
T Consensus 77 lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH 119 (285)
T cd05605 77 LVLTLMNGGDLKFHIYNMG----NPGFDEERAVFYAAEITCGLEDLH 119 (285)
T ss_pred EEEeccCCCcHHHHHHhcC----cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886533 246899999999999999999999
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3 | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-10 Score=113.12 Aligned_cols=81 Identities=21% Similarity=0.223 Sum_probs=66.4
Q ss_pred cccccCcCCCccccCceecEEEEEeC-CCce-----------------------------------eEEEeccccCCCce
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG-EKWT-----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-----------------------------------~g~~~~~~~~~~~~ 435 (549)
....+|...+.||+|+||.||+|... ++.. .+++.. .+.
T Consensus 16 ~~~~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~~ 90 (297)
T cd06656 16 DPKKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-----GDE 90 (297)
T ss_pred ChhhhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEec-----CCE
Confidence 34467888899999999999999863 2222 345554 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++... .+++.++..++.+++.||.|||
T Consensus 91 ~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~~l~~~L~~LH 132 (297)
T cd06656 91 LWVVMEYLAGGSLTDVVTET-------CMDEGQIAAVCRECLQALDFLH 132 (297)
T ss_pred EEEeecccCCCCHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998643 4788899999999999999999
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.5e-11 Score=115.24 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=58.4
Q ss_pred cccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCceEEEEEeec
Q 039925 403 IGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDFKAVVFDYM 443 (549)
Q Consensus 403 lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~~~lv~ey~ 443 (549)
||+|+||.||++.... +.. .+++.. ....++||||+
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~-----~~~~~lv~e~~ 75 (277)
T cd05607 1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFES-----KTHLCLVMSLM 75 (277)
T ss_pred CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEec-----CCeEEEEEecC
Confidence 7999999999998653 222 233333 66789999999
Q ss_pred CCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 444 QNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 444 ~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|+|.+++.... ...+++.....++.|++.|++|||
T Consensus 76 ~g~~L~~~~~~~~----~~~~~~~~~~~~~~qi~~al~~lH 112 (277)
T cd05607 76 NGGDLKYHIYNVG----ERGLEMERVIHYSAQITCGILHLH 112 (277)
T ss_pred CCCCHHHHHHhcc----ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999998886543 345889999999999999999999
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-10 Score=111.96 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=63.3
Q ss_pred CcCCCccccCceecEEEEEeC-CCce----------------------------------------eEEEeccccCCCce
Q 039925 397 FSSSNMIGQGSFGSVYKGILG-EKWT----------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~-~~~~----------------------------------------~g~~~~~~~~~~~~ 435 (549)
|...+.||+|+||.||+|+.. ++.. .+++.. ...
T Consensus 2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~~ 76 (258)
T cd06632 2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTERE-----EDN 76 (258)
T ss_pred ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEec-----CCe
Confidence 567788999999999999875 3222 344444 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++++|.++++... .+++..+..++.++++|++|||
T Consensus 77 ~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH 119 (258)
T cd06632 77 LYIFLELVPGGSLAKLLKKYG------SFPEPVIRLYTRQILLGLEYLH 119 (258)
T ss_pred EEEEEEecCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997543 5889999999999999999999
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops |
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-10 Score=112.30 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=62.5
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce---------------------------------------eEEEeccccCCCce
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT---------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------------~g~~~~~~~~~~~~ 435 (549)
.|...+.||+|+||.||+|.... +.. .+++.. ...
T Consensus 2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~-----~~~ 76 (277)
T cd06917 2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLK-----GPR 76 (277)
T ss_pred hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeee-----CCE
Confidence 46677889999999999999743 221 233433 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++++|.++++.. .+++.....++.++++|+.|||
T Consensus 77 ~~lv~e~~~~~~L~~~~~~~-------~l~~~~~~~i~~~i~~~l~~lh 118 (277)
T cd06917 77 LWIIMEYAEGGSVRTLMKAG-------PIAEKYISVIIREVLVALKYIH 118 (277)
T ss_pred EEEEEecCCCCcHHHHHHcc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998642 5889999999999999999999
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent |
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-10 Score=117.06 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=65.4
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+|+..+ +.. ++++.. .+.
T Consensus 1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~-----~~~ 75 (333)
T cd05600 1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQD-----DEY 75 (333)
T ss_pred CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEc-----CCE
Confidence 367788899999999999999864 222 244444 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... .+++.+...++.|++.||.|||
T Consensus 76 ~~lv~e~~~g~~L~~~l~~~~------~l~~~~~~~~~~qi~~~l~~lH 118 (333)
T cd05600 76 LYLAMEYVPGGDFRTLLNNLG------VLSEDHARFYMAEMFEAVDALH 118 (333)
T ss_pred EEEEEeCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997543 5788889999999999999999
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.9e-11 Score=115.18 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=68.0
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCceE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
..++|...+.||+|+||.||+|.... +.. .+++.. ....
T Consensus 3 ~~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 77 (280)
T cd06611 3 PNDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFY-----ENKL 77 (280)
T ss_pred chhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEec-----CCeE
Confidence 45678888899999999999999853 222 344544 6788
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.+++.... ..+++.....++.|++.||.|||
T Consensus 78 ~lv~e~~~~~~L~~~~~~~~-----~~l~~~~~~~~~~ql~~~l~~lh 120 (280)
T cd06611 78 WILIEFCDGGALDSIMLELE-----RGLTEPQIRYVCRQMLEALNFLH 120 (280)
T ss_pred EEEeeccCCCcHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987543 46889999999999999999999
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti |
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-10 Score=118.25 Aligned_cols=78 Identities=24% Similarity=0.240 Sum_probs=60.0
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~ 434 (549)
...++|...+.||+|+||.||+|+... +.. ++++.. .+
T Consensus 71 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~ 145 (353)
T PLN00034 71 KSLSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDH-----NG 145 (353)
T ss_pred CCHHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEecc-----CC
Confidence 345677788899999999999998753 221 234443 66
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+.. ...+.....++.|+++||+|||
T Consensus 146 ~~~lv~e~~~~~~L~~~~----------~~~~~~~~~i~~qi~~aL~~LH 185 (353)
T PLN00034 146 EIQVLLEFMDGGSLEGTH----------IADEQFLADVARQILSGIAYLH 185 (353)
T ss_pred eEEEEEecCCCCcccccc----------cCCHHHHHHHHHHHHHHHHHHH
Confidence 789999999999987542 2445667889999999999999
|
|
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.8e-11 Score=114.90 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=65.0
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
++|...+.||+|+||.||++.... +.. ++++.. .+..+
T Consensus 1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~~~ 75 (286)
T cd06622 1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFI-----EGAVY 75 (286)
T ss_pred ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheec-----CCeEE
Confidence 357778899999999999999863 221 233333 56789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|..+++... ....+++.....++.+++.||.|||
T Consensus 76 lv~e~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~LH 119 (286)
T cd06622 76 MCMEYMDAGSLDKLYAGGV---ATEGIPEDVLRRITYAVVKGLKFLK 119 (286)
T ss_pred EEEeecCCCCHHHHHHhcc---ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987542 2346899999999999999999999
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.1e-11 Score=124.67 Aligned_cols=91 Identities=14% Similarity=0.076 Sum_probs=65.3
Q ss_pred cccccCcCCCccccCceecEEEEEeC-CCcee---------------------------------EEEec-ccc------
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG-EKWTA---------------------------------GYSEG-TDF------ 430 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~~---------------------------------g~~~~-~~~------ 430 (549)
...+.|...+.||+|+||.||+|+.. ++..+ -.+.. ...
T Consensus 29 ~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~ 108 (496)
T PTZ00283 29 EQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP 108 (496)
T ss_pred ccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCc
Confidence 45678999999999999999999864 33320 00000 000
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
......++||||+++|+|.++++... .....+++.....++.|++.||+|||
T Consensus 109 ~~~~~i~lV~Ey~~~gsL~~~l~~~~--~~~~~l~e~~~~~i~~qll~aL~~lH 160 (496)
T PTZ00283 109 ENVLMIALVLDYANAGDLRQEIKSRA--KTNRTFREHEAGLLFIQVLLAVHHVH 160 (496)
T ss_pred ccceEEEEEEeCCCCCcHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00113679999999999999997543 12346888889999999999999999
|
|
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-10 Score=116.63 Aligned_cols=73 Identities=18% Similarity=0.228 Sum_probs=59.0
Q ss_pred CccccCceecEEEEEeCCCc--e--------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEKW--T--------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~--~--------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
++||+|+||.||+|...+.. + .+++.. .+..++||
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~-----~~~~~lv~ 75 (316)
T cd05592 1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQT-----KEHLFFVM 75 (316)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEc-----CCEEEEEE
Confidence 36999999999999875432 1 223333 56789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.++++... .+++.....++.|++.||+|||
T Consensus 76 e~~~gg~L~~~~~~~~------~~~~~~~~~~~~qi~~al~~LH 113 (316)
T cd05592 76 EYLNGGDLMFHIQSSG------RFDEARARFYAAEIICGLQFLH 113 (316)
T ss_pred cCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987543 5788888899999999999999
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.5e-11 Score=124.30 Aligned_cols=81 Identities=9% Similarity=0.058 Sum_probs=65.0
Q ss_pred CcCCCccccCceecEEEEEeCCC--c-e----------------------------------eEEEeccccCCCceEEEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEK--W-T----------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~--~-~----------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
|...+.||+|+||.||+|..... . + ++++.. .+..++|
T Consensus 69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~-----~~~~~lv 143 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKS-----DDKLLLI 143 (478)
T ss_pred EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEE-----CCEEEEE
Confidence 77788899999999999986433 1 1 455665 6789999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.++++... ....++++.....++.|++.||+|||
T Consensus 144 ~E~~~gg~L~~~l~~~~--~~~~~l~~~~~~~i~~qi~~aL~~lH 186 (478)
T PTZ00267 144 MEYGSGGDLNKQIKQRL--KEHLPFQEYEVGLLFYQIVLALDEVH 186 (478)
T ss_pred EECCCCCCHHHHHHHHH--hccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999886432 11346888888999999999999999
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-11 Score=113.13 Aligned_cols=83 Identities=24% Similarity=0.313 Sum_probs=52.4
Q ss_pred cccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCcccccc-CCccccCCCC
Q 039925 224 TATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGN-LPSSLGYYQN 302 (549)
Q Consensus 224 ~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~ 302 (549)
+|+.|||++|.++. +-.+-.++ .+++.|.|+.|.+.. + ..++.+-+|..||+++|+|... -...++++|.
T Consensus 330 ~L~~LDLS~N~Ls~-~~Gwh~KL--GNIKtL~La~N~iE~-L-----SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 330 QLQLLDLSGNLLAE-CVGWHLKL--GNIKTLKLAQNKIET-L-----SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC 400 (490)
T ss_pred cceEeecccchhHh-hhhhHhhh--cCEeeeehhhhhHhh-h-----hhhHhhhhheeccccccchhhHHHhcccccccH
Confidence 45555555555542 22233344 667777777777652 1 3466677778888888877622 2346778888
Q ss_pred CCEEEccCCcccc
Q 039925 303 LMELSVSRNKLSA 315 (549)
Q Consensus 303 L~~L~Ls~N~l~~ 315 (549)
|+.+.|.+|.+.+
T Consensus 401 LE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 401 LETLRLTGNPLAG 413 (490)
T ss_pred HHHHhhcCCCccc
Confidence 8888888888775
|
|
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-10 Score=111.80 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=65.1
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce----------------------------------------eEEEeccccCCC
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT----------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~----------------------------------------~g~~~~~~~~~~ 433 (549)
++|...+.||+|+||.||+|...+ +.. .+++.. .
T Consensus 2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~ 76 (263)
T cd06625 2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRD-----D 76 (263)
T ss_pred CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEcc-----C
Confidence 578999999999999999997643 221 344444 5
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|+|.+++.... .+++.....++.+++.|+.|||
T Consensus 77 ~~~~~v~e~~~~~~l~~~~~~~~------~~~~~~~~~~~~~l~~~l~~lH 121 (263)
T cd06625 77 ETLSIFMEYMPGGSVKDQLKAYG------ALTETVTRKYTRQILEGVEYLH 121 (263)
T ss_pred CeEEEEEEECCCCcHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999987543 5788888999999999999999
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-10 Score=116.44 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=59.8
Q ss_pred CccccCceecEEEEEeCCCc-e---------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEKW-T---------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~-~---------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+.||+|+||.||+|...+.. . .+++.. .+..++||
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~-----~~~~~lv~ 75 (316)
T cd05619 1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQT-----KENLFFVM 75 (316)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEe-----CCEEEEEE
Confidence 36999999999999976432 1 233444 56789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.+++.... .+++.+...++.|+++||+|||
T Consensus 76 ey~~~g~L~~~l~~~~------~~~~~~~~~~~~qi~~al~~LH 113 (316)
T cd05619 76 EYLNGGDLMFHIQSCH------KFDLPRATFYAAEIICGLQFLH 113 (316)
T ss_pred eCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997543 5888899999999999999999
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-10 Score=116.75 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=60.2
Q ss_pred CccccCceecEEEEEeCCCc-e---------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEKW-T---------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~-~---------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+.||+|+||.||+|+..+.. . .+++.. .+..++||
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~-----~~~~~lv~ 75 (318)
T cd05570 1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQT-----KDRLFFVM 75 (318)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEc-----CCEEEEEE
Confidence 46999999999999875432 1 233444 66789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|..++.... .+++.....++.|+++||.|||
T Consensus 76 e~~~~~~L~~~~~~~~------~l~~~~~~~~~~qi~~~l~~LH 113 (318)
T cd05570 76 EYVNGGDLMFHIQRSG------RFDEPRARFYAAEIVLGLQFLH 113 (318)
T ss_pred cCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887543 5899999999999999999999
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >smart00219 TyrKc Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-10 Score=111.70 Aligned_cols=78 Identities=31% Similarity=0.531 Sum_probs=63.1
Q ss_pred cCCCccccCceecEEEEEeCCCc------e-----------------------------------eEEEeccccCCCceE
Q 039925 398 SSSNMIGQGSFGSVYKGILGEKW------T-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 398 ~~~~~lG~G~~g~Vy~~~~~~~~------~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
...+.||+|+||.||++.+.+.. + ++.+.. .+..
T Consensus 2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~ 76 (258)
T smart00219 2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTE-----EEPL 76 (258)
T ss_pred cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcC-----CCee
Confidence 45678999999999999986522 1 344444 5678
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.++++... ...+++.++..++.|++.|++|||
T Consensus 77 ~~i~e~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~ql~~~l~~lh 120 (258)
T smart00219 77 MIVMEYMEGGDLLDYLRKNR----PKELSLSDLLSFALQIARGMEYLE 120 (258)
T ss_pred EEEEeccCCCCHHHHHHhhh----hccCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998644 122899999999999999999999
|
Phosphotransferases. Tyrosine-specific kinase subfamily. |
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-10 Score=112.92 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=66.6
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC-ce-----------------------------------eEEEecccc-CCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK-WT-----------------------------------AGYSEGTDF-KGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~-----------------------------------~g~~~~~~~-~~~~ 434 (549)
.+.+.|...+.||+|+||.||+|..... .. .+++..... ....
T Consensus 13 ~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~ 92 (282)
T cd06636 13 DPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDD 92 (282)
T ss_pred ChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCC
Confidence 4667888889999999999999997532 21 122211000 1135
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... ...+++.....++.|++.|+.|||
T Consensus 93 ~~~iv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~qi~~al~~LH 138 (282)
T cd06636 93 QLWLVMEFCGAGSVTDLVKNTK----GNALKEDWIAYICREILRGLAHLH 138 (282)
T ss_pred EEEEEEEeCCCCcHHHHHHHcc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999987543 245778888899999999999999
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-10 Score=116.31 Aligned_cols=73 Identities=21% Similarity=0.165 Sum_probs=59.9
Q ss_pred CccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCceEEEEEe
Q 039925 401 NMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDFKAVVFD 441 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~~~lv~e 441 (549)
++||+|+||.||++.... +.. .+++.. .+..++|||
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-----~~~~~lv~e 75 (323)
T cd05571 1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQT-----HDRLCFVME 75 (323)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEc-----CCEEEEEEe
Confidence 369999999999998643 321 234444 678899999
Q ss_pred ecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 442 YMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 442 y~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+++|+|.+++.... .+++.+...++.|+++||+|||
T Consensus 76 ~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~L~~lH 112 (323)
T cd05571 76 YANGGELFFHLSRER------VFSEDRARFYGAEIVSALGYLH 112 (323)
T ss_pred CCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999987543 6889999999999999999999
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-10 Score=110.96 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=64.4
Q ss_pred ccCcCCCccccCceecEEEEEeCCCce-------------------------------------eEEEeccccCCCceEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKWT-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
++|...+.||.|++|.||+|...+... .+++... .....+
T Consensus 1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~---~~~~~~ 77 (287)
T cd06621 1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDE---SSSSIG 77 (287)
T ss_pred CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEcc---CCCeEE
Confidence 367778899999999999999854221 3444331 134679
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++..... ....+++.....++.|+++||+|||
T Consensus 78 lv~e~~~~~~L~~~l~~~~~--~~~~l~~~~~~~i~~~i~~~L~~lH 122 (287)
T cd06621 78 IAMEYCEGGSLDSIYKKVKK--RGGRIGEKVLGKIAESVLKGLSYLH 122 (287)
T ss_pred EEEEecCCCCHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988764220 2345788889999999999999999
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-10 Score=111.60 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=62.5
Q ss_pred cCcCCCccccCceecEEEEEeCCCc-e-------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKW-T-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~-~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+|...+.||+|+||.||++....+. . .+.+.. .....+
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~----~~~~~~ 76 (257)
T cd08223 1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEG----EDGLLY 76 (257)
T ss_pred CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecC----CCCEEE
Confidence 3667788999999999999865332 1 122211 134578
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.++++... ...+++.+...++.+++.|++|||
T Consensus 77 lv~e~~~~~~l~~~l~~~~----~~~l~~~~~~~~~~~l~~~l~~lH 119 (257)
T cd08223 77 IVMGFCEGGDLYHKLKEQK----GKLLPENQVVEWFVQIAMALQYLH 119 (257)
T ss_pred EEecccCCCcHHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998643 346899999999999999999999
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-10 Score=113.19 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=64.0
Q ss_pred CcCCCccccCceecEEEEEeCCCce------------------------------------eEEEeccccCCCceEEEEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEKWT------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
|...+.||+|+||.||+|....... .+++.. .+..++||
T Consensus 7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~-----~~~~~~v~ 81 (282)
T cd06643 7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYY-----ENNLWILI 81 (282)
T ss_pred HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEee-----CCEEEEEE
Confidence 4566789999999999998764322 355555 67889999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|..++.... ..++|..+..++.|+++||.|||
T Consensus 82 e~~~~~~l~~~~~~~~-----~~l~~~~~~~~~~qi~~~L~~LH 120 (282)
T cd06643 82 EFCAGGAVDAVMLELE-----RPLTEPQIRVVCKQTLEALNYLH 120 (282)
T ss_pred EecCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886532 46899999999999999999999
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-10 Score=111.32 Aligned_cols=77 Identities=26% Similarity=0.240 Sum_probs=63.9
Q ss_pred cCcCCCccccCceecEEEEEeCCCc-e------------------------------------eEEEeccccCCCceEEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKW-T------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~-~------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
+|...+.||.|+||.||+|+..+.. . .+++.. ....++
T Consensus 2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~~ 76 (274)
T cd06609 2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLK-----GSKLWI 76 (274)
T ss_pred hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEE-----CCeEEE
Confidence 5777788999999999999975432 1 334444 567899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+||+++|+|.++++.. .+++.....++.|++.|+.|||
T Consensus 77 v~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~ql~~~l~~lh 115 (274)
T cd06609 77 IMEYCGGGSCLDLLKPG-------KLDETYIAFILREVLLGLEYLH 115 (274)
T ss_pred EEEeeCCCcHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998753 5889999999999999999999
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-10 Score=111.33 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=62.1
Q ss_pred CcCCCccccCceecEEEEEeCCC-ce--------------------------------------------eEEEeccccC
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEK-WT--------------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~-~~--------------------------------------------~g~~~~~~~~ 431 (549)
|.....||+|+||.||+|..... .. .+++..
T Consensus 2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---- 77 (267)
T cd06628 2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLD---- 77 (267)
T ss_pred ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEe----
Confidence 55678899999999999986432 11 234443
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++++|.+++.... .+++.....++.|++.|++|||
T Consensus 78 -~~~~~lv~e~~~~~~L~~~l~~~~------~l~~~~~~~~~~~l~~~l~~lH 123 (267)
T cd06628 78 -ADHLNIFLEYVPGGSVAALLNNYG------AFEETLVRNFVRQILKGLNYLH 123 (267)
T ss_pred -CCccEEEEEecCCCCHHHHHHhcc------CccHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999997543 5788889999999999999999
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.4e-11 Score=115.78 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=64.0
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+|.... +.. ++++.+ ...
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~ 75 (291)
T cd05612 1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHD-----QRF 75 (291)
T ss_pred CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhcc-----CCe
Confidence 367888899999999999999753 322 122222 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... .+++.....++.|++.||+|||
T Consensus 76 ~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH 118 (291)
T cd05612 76 LYMLMEYVPGGELFSYLRNSG------RFSNSTGLFYASEIVCALEYLH 118 (291)
T ss_pred EEEEEeCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997543 5888889999999999999999
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.3e-11 Score=117.34 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=63.4
Q ss_pred cCcCCCccccCceecEEEEEeCCCc--e--------------------------------------eEEEeccccCCCce
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKW--T--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~--~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
+|...+.||+|+||.||+|...+.. + .+++.. .+.
T Consensus 1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-----~~~ 75 (324)
T cd05587 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT-----MDR 75 (324)
T ss_pred CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEc-----CCE
Confidence 4677789999999999999876432 1 122333 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 76 ~~lv~E~~~~g~L~~~~~~~~------~~~~~~~~~~~~qi~~al~~lH 118 (324)
T cd05587 76 LYFVMEYVNGGDLMYHIQQVG------KFKEPHAVFYAAEIAIGLFFLH 118 (324)
T ss_pred EEEEEcCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999987543 5788999999999999999999
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Probab=99.08 E-value=8e-11 Score=115.47 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=63.5
Q ss_pred ccCcCCCccccCceecEEEEEeCCC-ce-------------------------------------eEEEeccccCCCceE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEK-WT-------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~-~~-------------------------------------~g~~~~~~~~~~~~~ 436 (549)
++|...+.||+|+||.||+|.+.+. .. .+++.. .+..
T Consensus 1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 75 (286)
T cd07846 1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRR-----KKRL 75 (286)
T ss_pred CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhccc-----CCeE
Confidence 3577788999999999999998642 22 122332 5678
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||++++++.++.+... .++|.....++.|+++||+|||
T Consensus 76 ~lv~e~~~~~~l~~~~~~~~------~~~~~~~~~~~~~i~~~l~~LH 117 (286)
T cd07846 76 YLVFEFVDHTVLDDLEKYPN------GLDESRVRKYLFQILRGIEFCH 117 (286)
T ss_pred EEEEecCCccHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876432 4899999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI |
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-10 Score=112.40 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=63.5
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+|...+.||+|+||.||+|+... +.. .+++.. +...+
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 75 (285)
T cd07861 1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQ-----ESRLY 75 (285)
T ss_pred CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEee-----CCeEE
Confidence 46677889999999999998753 221 344544 67889
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||++ |+|.+++.... ....+++.....++.|+++||+|||
T Consensus 76 ~v~e~~~-~~l~~~~~~~~---~~~~~~~~~~~~~~~qi~~~L~~lH 118 (285)
T cd07861 76 LIFEFLS-MDLKKYLDSLP---KGQYMDAELVKSYLYQILQGILFCH 118 (285)
T ss_pred EEEecCC-CCHHHHHhcCC---CCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999998 68988886543 2356889999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-10 Score=114.35 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=63.4
Q ss_pred CcCCCccccCceecEEEEEeCCCc-e--------------------------------------eEEEeccccCCCceEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEKW-T--------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~~-~--------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
|...+.||+|+||.||++...... . .+.+.. .+..+
T Consensus 2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~-----~~~~~ 76 (285)
T cd05630 2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYET-----KDALC 76 (285)
T ss_pred ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEec-----CCEEE
Confidence 566788999999999999875432 1 233444 56789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++.... ...+++..+..++.|++.|++|||
T Consensus 77 lv~e~~~g~~L~~~l~~~~----~~~l~~~~~~~~~~qi~~~l~~lH 119 (285)
T cd05630 77 LVLTLMNGGDLKFHIYHMG----EAGFEEGRAVFYAAEICCGLEDLH 119 (285)
T ss_pred EEEEecCCCcHHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986533 245889999999999999999999
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-10 Score=111.13 Aligned_cols=77 Identities=17% Similarity=0.315 Sum_probs=62.4
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce---------------------------------------------eEEEecccc
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT---------------------------------------------AGYSEGTDF 430 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------------------~g~~~~~~~ 430 (549)
|...+.||+|+||.||+|...+ +.. ++++..
T Consensus 3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~--- 79 (272)
T cd06629 3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETT--- 79 (272)
T ss_pred eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEecc---
Confidence 5667889999999999997532 221 334444
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++... .+++..+..++.|++.|+.|||
T Consensus 80 --~~~~~lv~e~~~~~~L~~~l~~~~------~l~~~~~~~~~~qi~~~l~~lH 125 (272)
T cd06629 80 --EEYLSIFLEYVPGGSIGSCLRTYG------RFEEQLVRFFTEQVLEGLAYLH 125 (272)
T ss_pred --CCceEEEEecCCCCcHHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999997643 5888888999999999999999
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte |
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-10 Score=116.61 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=63.9
Q ss_pred cCcCCCccccCceecEEEEEeCCCce----------------------------------------eEEEeccccCCCce
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------------~g~~~~~~~~~~~~ 435 (549)
+|...+.||+|+||.||+|+..+... .+++.. .+.
T Consensus 1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-----~~~ 75 (323)
T cd05616 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQT-----MDR 75 (323)
T ss_pred CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEec-----CCE
Confidence 57778899999999999998754321 233333 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 76 ~~lv~E~~~~g~L~~~~~~~~------~~~~~~~~~~~~qi~~aL~~LH 118 (323)
T cd05616 76 LYFVMEYVNGGDLMYQIQQVG------RFKEPHAVFYAAEIAIGLFFLH 118 (323)
T ss_pred EEEEEcCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999987543 5888999999999999999999
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-10 Score=114.19 Aligned_cols=79 Identities=22% Similarity=0.250 Sum_probs=63.1
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCceEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
|...+.||+|+||.||+|.... +.. .+++.. .+..+
T Consensus 2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~-----~~~~~ 76 (285)
T cd05632 2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYET-----KDALC 76 (285)
T ss_pred ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEec-----CCEEE
Confidence 5566789999999999998743 322 233333 56789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++.... ...+++.....++.|++.|+.|||
T Consensus 77 lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~ql~~~l~~lH 119 (285)
T cd05632 77 LVLTIMNGGDLKFHIYNMG----NPGFEEERALFYAAEILCGLEDLH 119 (285)
T ss_pred EEEEeccCccHHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887543 246899999999999999999999
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-10 Score=110.83 Aligned_cols=84 Identities=14% Similarity=0.099 Sum_probs=63.6
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+|...+.||.|+||.||++.... +.. .+++.. ......+
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~---~~~~~~~ 77 (265)
T cd08217 1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIID---RSNQTLY 77 (265)
T ss_pred CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeec---CCCCEEE
Confidence 46677889999999999998643 221 222221 1145678
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|||+++|+|.+++.... ....++++...+.++.+++.|++|||
T Consensus 78 ~~~e~~~~~~L~~~l~~~~--~~~~~l~~~~~~~~~~~i~~~l~~lH 122 (265)
T cd08217 78 IVMEYCEGGDLAQLIQKCK--KERKYIEEEFIWRILTQLLLALYECH 122 (265)
T ss_pred EEehhccCCCHHHHHHHHh--hcccCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999997542 12357899999999999999999999
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-10 Score=112.18 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=66.0
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCceE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
..++|...+.||+|+||.||+|+..+ +.. .+++.. .+..
T Consensus 7 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~-----~~~~ 81 (267)
T cd06645 7 PQEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLR-----RDKL 81 (267)
T ss_pred cHHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEe-----CCEE
Confidence 34678888899999999999998743 221 233333 5778
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.++++..+ .+++.+...++.|++.|+.|||
T Consensus 82 ~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH 123 (267)
T cd06645 82 WICMEFCGGGSLQDIYHVTG------PLSESQIAYVSRETLQGLYYLH 123 (267)
T ss_pred EEEEeccCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987543 5889999999999999999999
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.4e-10 Score=109.80 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=63.4
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce----------------------------------------eEEEeccccCCC
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT----------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~----------------------------------------~g~~~~~~~~~~ 433 (549)
.+|...+.||+|+||.||+|...+ +.. .+.+.. ...
T Consensus 2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~ 78 (266)
T cd06651 2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRD---RAE 78 (266)
T ss_pred CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEc---CCC
Confidence 478889999999999999998643 211 222221 113
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++++||+++++|.+++.... .+++.....++.|+++||+|||
T Consensus 79 ~~~~l~~e~~~~~~L~~~l~~~~------~l~~~~~~~~~~qi~~~l~~LH 123 (266)
T cd06651 79 KTLTIFMEYMPGGSVKDQLKAYG------ALTESVTRKYTRQILEGMSYLH 123 (266)
T ss_pred CEEEEEEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999997543 5788889999999999999999
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development |
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=99.07 E-value=4e-10 Score=109.18 Aligned_cols=82 Identities=22% Similarity=0.178 Sum_probs=66.2
Q ss_pred ccCcCCCccccCceecEEEEEeCCCc-e------------------------------------eEEEeccccCCCceEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKW-T------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~-~------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
++|...+.||.|+||.||+|...+.. . .+.+.. .+..+
T Consensus 1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~ 75 (267)
T cd06610 1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVV-----GDELW 75 (267)
T ss_pred CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEee-----CCEEE
Confidence 46888899999999999999975432 1 233433 67789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++++|.++++... ....+++.....++.|++.|++|||
T Consensus 76 iv~e~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~ql~~al~~lh 119 (267)
T cd06610 76 LVMPYLSGGSLLDIMKSSY---PRGGLDEAIIATVLKEVLKGLEYLH 119 (267)
T ss_pred EEEeccCCCcHHHHHHHhc---ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998643 1246889999999999999999999
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-10 Score=111.49 Aligned_cols=84 Identities=21% Similarity=0.278 Sum_probs=64.4
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------eEEEeccccCCCc-eEEEEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------AGYSEGTDFKGID-FKAVVF 440 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------~g~~~~~~~~~~~-~~~lv~ 440 (549)
.+|...+.||+|+||.||++...+ |.. +.++.. ....+. ..+++|
T Consensus 17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~-~~~~~~~~~~i~m 95 (313)
T KOG0198|consen 17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGS-SSSRENDEYNIFM 95 (313)
T ss_pred chhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCc-cccccCeeeEeee
Confidence 457788899999999999999754 222 111110 001122 689999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.+++...+ . +++.....++++||.+||+|||
T Consensus 96 Ey~~~GsL~~~~~~~g----~-~l~E~~v~~ytr~iL~GL~ylH 134 (313)
T KOG0198|consen 96 EYAPGGSLSDLIKRYG----G-KLPEPLVRRYTRQILEGLAYLH 134 (313)
T ss_pred eccCCCcHHHHHHHcC----C-CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999764 2 6899999999999999999999
|
|
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-10 Score=109.87 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=41.6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++|+|.+++.... ...++|.....++.|+++||+|||
T Consensus 68 ~~~~~v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~L~~lH 114 (257)
T cd05040 68 HPLMMVTELAPLGSLLDRLRKDA----LGHFLISTLCDYAVQIANGMRYLE 114 (257)
T ss_pred CeEEEEEEecCCCcHHHHHHhcc----cccCcHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999998643 146899999999999999999999
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-10 Score=115.34 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=59.0
Q ss_pred cccCceecEEEEEeCCCc-e--------------------------------------eEEEeccccCCCceEEEEEeec
Q 039925 403 IGQGSFGSVYKGILGEKW-T--------------------------------------AGYSEGTDFKGIDFKAVVFDYM 443 (549)
Q Consensus 403 lG~G~~g~Vy~~~~~~~~-~--------------------------------------~g~~~~~~~~~~~~~~lv~ey~ 443 (549)
||+|+||.||+|...+.. . .+++.. .+..++||||+
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~lv~e~~ 75 (312)
T cd05585 1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQS-----PEKLYLVLAFI 75 (312)
T ss_pred CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEec-----CCeEEEEEcCC
Confidence 799999999999975432 1 234444 67889999999
Q ss_pred CCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 444 QNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 444 ~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 76 ~~g~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH 110 (312)
T cd05585 76 NGGELFHHLQREG------RFDLSRARFYTAELLCALENLH 110 (312)
T ss_pred CCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999997543 5889999999999999999999
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-10 Score=115.08 Aligned_cols=73 Identities=22% Similarity=0.215 Sum_probs=59.7
Q ss_pred CccccCceecEEEEEeCCCc-e---------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEKW-T---------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~-~---------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
++||+|+||.||+|+..+.. . .+++.. ++..++||
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~-----~~~~~lv~ 75 (321)
T cd05591 1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQT-----KDRLFFVM 75 (321)
T ss_pred CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEc-----CCeEEEEE
Confidence 46999999999999875432 1 233333 56789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.+++.... .+++.....++.|+++||.|||
T Consensus 76 E~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH 113 (321)
T cd05591 76 EYVNGGDLMFQIQRSR------KFDEPRSRFYAAEVTLALMFLH 113 (321)
T ss_pred eCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987543 5888899999999999999999
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-10 Score=110.02 Aligned_cols=91 Identities=20% Similarity=0.154 Sum_probs=68.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-e-----------------------------------eEEEecccc-CCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-T-----------------------------------AGYSEGTDF-KGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~-----------------------------------~g~~~~~~~-~~~~ 434 (549)
.++++|...+.||+|+||.||+|...... . .+++..... ....
T Consensus 3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~ 82 (275)
T cd06608 3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDD 82 (275)
T ss_pred CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcce
Confidence 46789999999999999999999985432 1 333432110 1134
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++++|.++++... .....+++..+..++.|+++||.|||
T Consensus 83 ~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~~ql~~al~~lH 130 (275)
T cd06608 83 QLWLVMELCGGGSVTDLVKGLR--KKGKRLKEEWIAYILRETLRGLAYLH 130 (275)
T ss_pred EEEEEEEcCCCCcHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999987432 01346889999999999999999999
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-10 Score=115.70 Aligned_cols=73 Identities=22% Similarity=0.255 Sum_probs=59.3
Q ss_pred CccccCceecEEEEEeCCC-ce---------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEK-WT---------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~-~~---------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+.||+|+||.||+|+.... .. ++++.. .+..++||
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~-----~~~~~iv~ 75 (320)
T cd05590 1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQT-----PDRLFFVM 75 (320)
T ss_pred CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEc-----CCEEEEEE
Confidence 3699999999999987542 22 233333 56789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 76 Ey~~~g~L~~~i~~~~------~l~~~~~~~~~~ql~~~L~~lH 113 (320)
T cd05590 76 EFVNGGDLMFHIQKSR------RFDEARARFYAAEITSALMFLH 113 (320)
T ss_pred cCCCCchHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987543 5888899999999999999999
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-10 Score=104.23 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=68.4
Q ss_pred cccccCcCCCccccCceecEEEEE-eCCCce-----------------------------------eEEEeccccCCCce
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGI-LGEKWT-----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~-~~~~~~-----------------------------------~g~~~~~~~~~~~~ 435 (549)
...+.|...+.+|+|||.-||.++ ..++.. +.++......+..+
T Consensus 18 In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~ 97 (302)
T KOG2345|consen 18 INNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHE 97 (302)
T ss_pred EcCceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCcee
Confidence 566779999999999999999987 222221 01111101123567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++++.|...|+|.+.+...+ ..+..++..+.+.|+.||++||+|||
T Consensus 98 ~yll~Pyy~~Gsl~d~i~~~k--~kg~~~sE~~iL~if~gic~gL~~lH 144 (302)
T KOG2345|consen 98 AYLLLPYYKRGSLLDEIERLK--IKGNFVSEAQILWIFLGICRGLEALH 144 (302)
T ss_pred EEEEeehhccccHHHHHHHHh--hcCCccCHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999998655 23457899999999999999999999
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.4e-12 Score=118.23 Aligned_cols=242 Identities=15% Similarity=0.174 Sum_probs=137.5
Q ss_pred ccccCCCCCCEEEccCCcceec----CCccccCCCCCCEeeccccc---ccccCCcc-------cccccCccceeeeccc
Q 039925 51 PHVGNFGYLRFINLVDNNFRGE----IPEKVGRLFRLEYLLLANNH---FSGKIPAN-------LSHCSNLLTKLFICET 116 (549)
Q Consensus 51 ~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~---l~~~~p~~-------l~~l~~L~~~L~Ls~n 116 (549)
+.+-.+..++.++|++|.|... +...+.+.++|+..++|+=- +...+|+. +-.+++| ++|+||.|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L-~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKL-QKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCce-eEeecccc
Confidence 3455677888999999988632 44556677788888887532 22344543 3345566 77777777
Q ss_pred ccccccccc----cCCCCCCCEEEeecceeeee-------------CCccccCCCCCCEEecccCcceec----cccccc
Q 039925 117 HLSGQLLDF----IGNPSAIQVMIFKENSLEGK-------------FPNTLSNLRSLFYDNINRNEFSGL----IPSFIF 175 (549)
Q Consensus 117 ~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~-------------~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~ 175 (549)
-+...-+.. +.++..|++|.|.+|.+... ...-..+-++|+.+....|++... +...|.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 665443332 34456677777777766511 011123345566666666665422 223344
Q ss_pred ccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccc----cChhhhhccccC
Q 039925 176 NIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGT----ITLGIKKLIFVN 250 (549)
Q Consensus 176 ~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~~~ 250 (549)
..+ |+.+.++.|.+...--..+. ..+..+++|+.|||..|.++.. +...++.+ ++
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~------------------eal~~~~~LevLdl~DNtft~egs~~LakaL~s~--~~ 242 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALA------------------EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW--PH 242 (382)
T ss_pred hccccceEEEecccccCchhHHHH------------------HHHHhCCcceeeecccchhhhHHHHHHHHHhccc--ch
Confidence 444 66666666655421111111 1123345777777777777632 23445555 77
Q ss_pred ccEEEcCCCcccccCCCcCcccc-CCccccCeeeccCcccccc----CCccccCCCCCCEEEccCCcc
Q 039925 251 LYALTMVKNKLSGPIPHHIASSL-GNLTLLTYLALDNNKLQGN----LPSSLGYYQNLMELSVSRNKL 313 (549)
Q Consensus 251 L~~L~L~~n~l~~~~p~~l~~~l-~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l 313 (549)
|+.|++++|.+.......+...+ ...++|+.|.+.+|.|+.. +...+...+.|..|+|++|.+
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 77888887777644322222222 2357778888888877622 223445567777788887777
|
|
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-10 Score=116.43 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=66.0
Q ss_pred cccCcCCCccccCceecEEEEEeCCC-ce--------------------------------------eEEEeccccCCCc
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEK-WT--------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~--------------------------------------~g~~~~~~~~~~~ 434 (549)
.++|...+.||+|+||.||+|+.... .. ++++.. .+
T Consensus 17 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~ 91 (329)
T PTZ00263 17 LSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQD-----EN 91 (329)
T ss_pred chheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEc-----CC
Confidence 35788888999999999999998543 21 344544 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 92 ~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH 135 (329)
T PTZ00263 92 RVYFLLEFVVGGELFTHLRKAG------RFPNDVAKFYHAELVLAFEYLH 135 (329)
T ss_pred EEEEEEcCCCCChHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998643 5778888889999999999999
|
|
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-10 Score=115.78 Aligned_cols=73 Identities=16% Similarity=0.107 Sum_probs=59.5
Q ss_pred CccccCceecEEEEEeC----CCce-------------------------------------eEEEeccccCCCceEEEE
Q 039925 401 NMIGQGSFGSVYKGILG----EKWT-------------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~----~~~~-------------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
+.||+|+||.||++... .+.. ++++.. ....++|
T Consensus 2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~~~lv 76 (318)
T cd05582 2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQT-----EGKLYLI 76 (318)
T ss_pred ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEc-----CCEEEEE
Confidence 46999999999998752 2221 344554 6788999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 77 ~e~~~~~~L~~~l~~~~------~l~~~~~~~~~~qi~~~l~~lH 115 (318)
T cd05582 77 LDFLRGGDLFTRLSKEV------MFTEEDVKFYLAELALALDHLH 115 (318)
T ss_pred EcCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997543 5889999999999999999999
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.6e-10 Score=111.86 Aligned_cols=76 Identities=17% Similarity=0.081 Sum_probs=61.5
Q ss_pred CCccccC--ceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEEEE
Q 039925 400 SNMIGQG--SFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 400 ~~~lG~G--~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
.++||+| +||.||++.... +.. ++++.. ++..++|
T Consensus 3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~-----~~~~~lv 77 (327)
T cd08227 3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIA-----DNELWVV 77 (327)
T ss_pred hhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEE-----CCEEEEE
Confidence 4679999 789999998753 222 455655 6788999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.+++.... ...+++..+..++.|++.||+|||
T Consensus 78 ~e~~~~~~l~~~~~~~~----~~~l~~~~~~~i~~qi~~~L~~LH 118 (327)
T cd08227 78 TSFMAYGSAKDLICTHF----MDGMSELAIAYILQGVLKALDYIH 118 (327)
T ss_pred EeccCCCcHHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997543 235889999999999999999999
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype |
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-10 Score=115.34 Aligned_cols=73 Identities=21% Similarity=0.194 Sum_probs=59.7
Q ss_pred CccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCceEEEEEe
Q 039925 401 NMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDFKAVVFD 441 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~~~lv~e 441 (549)
++||+|+||.||++.... +.. .+++.. .+..++|||
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~-----~~~~~lv~E 75 (323)
T cd05595 1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT-----HDRLCFVME 75 (323)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEec-----CCEEEEEEe
Confidence 369999999999998643 221 244444 678899999
Q ss_pred ecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 442 YMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 442 y~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 76 ~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH 112 (323)
T cd05595 76 YANGGELFFHLSRER------VFTEERARFYGAEIVSALEYLH 112 (323)
T ss_pred CCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999887543 5889999999999999999999
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6 | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-10 Score=112.07 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=64.0
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~ 436 (549)
++|...+.||+|+||.||+|+... +.. .+++.. ....
T Consensus 1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~-----~~~~ 75 (283)
T cd06617 1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFR-----EGDV 75 (283)
T ss_pred CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEec-----CCcE
Confidence 467888899999999999998753 322 344444 5678
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||++ |+|.++++... .....+++.....++.|++.||+|||
T Consensus 76 ~lv~e~~~-~~l~~~l~~~~--~~~~~~~~~~~~~~~~qi~~~l~~lH 120 (283)
T cd06617 76 WICMEVMD-TSLDKFYKKVY--DKGLTIPEDILGKIAVSIVKALEYLH 120 (283)
T ss_pred EEEhhhhc-ccHHHHHHHhc--cCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999997 78888876432 12346899999999999999999999
|
Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs |
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-10 Score=115.03 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=59.9
Q ss_pred CccccCceecEEEEEeCCC-ce---------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEK-WT---------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~-~~---------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
++||+|+||.||+|..... .. .+++.. ....++||
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~-----~~~~~lv~ 75 (329)
T cd05588 1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQT-----ESRLFFVI 75 (329)
T ss_pred CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEc-----CCEEEEEE
Confidence 4699999999999987532 21 344444 66789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.+++...+ .+++..+..++.|++.||+|||
T Consensus 76 e~~~~g~L~~~~~~~~------~l~~~~~~~~~~qi~~~l~~lH 113 (329)
T cd05588 76 EFVSGGDLMFHMQRQR------KLPEEHARFYSAEISLALNFLH 113 (329)
T ss_pred eCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887543 6899999999999999999999
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.2e-10 Score=107.98 Aligned_cols=80 Identities=20% Similarity=0.202 Sum_probs=63.4
Q ss_pred cccCcCCCccccCceecEEEEEeC-CCce------------------------------------------eEEEecccc
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILG-EKWT------------------------------------------AGYSEGTDF 430 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~------------------------------------------~g~~~~~~~ 430 (549)
.+.|-..+.||+|+||.|-+|.-+ +++. ++.+..
T Consensus 171 ~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~--- 247 (475)
T KOG0615|consen 171 NDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEV--- 247 (475)
T ss_pred cceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeec---
Confidence 344567889999999999999753 3332 233443
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++..|+|||||++|+|.+.+-..+ .+.......++.|+..|+.|||
T Consensus 248 --~ds~YmVlE~v~GGeLfd~vv~nk------~l~ed~~K~~f~Qll~avkYLH 293 (475)
T KOG0615|consen 248 --PDSSYMVLEYVEGGELFDKVVANK------YLREDLGKLLFKQLLTAVKYLH 293 (475)
T ss_pred --CCceEEEEEEecCccHHHHHHhcc------ccccchhHHHHHHHHHHHHHHH
Confidence 677899999999999999998654 5667777789999999999999
|
|
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-10 Score=110.62 Aligned_cols=50 Identities=18% Similarity=0.144 Sum_probs=41.6
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... .....+++..+..++.|++.||+|||
T Consensus 65 ~~~~~lv~e~~~~g~L~~~~~~~~--~~~~~l~~~~~~~~~~qi~~~l~~lH 114 (280)
T cd05608 65 KTDLCLVMTIMNGGDLRYHIYNVD--EENPGFPEPRACFYTAQIISGLEHLH 114 (280)
T ss_pred CCeEEEEEeCCCCCCHHHHHHhcc--ccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999998875422 12346899999999999999999999
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-10 Score=114.89 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=59.7
Q ss_pred CccccCceecEEEEEeCCCc-e---------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEKW-T---------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~-~---------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+.||+|+||.||+|+..... . ++++.. .+..++||
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~-----~~~~~lv~ 75 (329)
T cd05618 1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT-----ESRLFFVI 75 (329)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEe-----CCEEEEEE
Confidence 46999999999999875432 1 344444 67789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|..++.... .+++.....++.|++.||+|||
T Consensus 76 E~~~~~~L~~~~~~~~------~l~~~~~~~i~~qi~~~l~~lH 113 (329)
T cd05618 76 EYVNGGDLMFHMQRQR------KLPEEHARFYSAEISLALNYLH 113 (329)
T ss_pred eCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887543 5889999999999999999999
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-10 Score=114.11 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=59.3
Q ss_pred CccccCceecEEEEEeCCC-ce---------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEK-WT---------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~-~~---------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
++||+|+||.||+|+..+. .. ++++.. .+..++||
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-----~~~~~lv~ 75 (316)
T cd05620 1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQT-----KEHLFFVM 75 (316)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEe-----CCEEEEEE
Confidence 4699999999999997543 21 233333 56789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 76 E~~~~g~L~~~i~~~~------~~~~~~~~~~~~qi~~~l~~lH 113 (316)
T cd05620 76 EFLNGGDLMFHIQDKG------RFDLYRATFYAAEIVCGLQFLH 113 (316)
T ss_pred CCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987543 5788888999999999999999
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-10 Score=115.85 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=68.0
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc---e-------------------------------------eEEEeccccC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW---T-------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~---~-------------------------------------~g~~~~~~~~ 431 (549)
...++|...+.||+|+||.||+|.+.+.. + ++++..
T Consensus 27 ~~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~---- 102 (340)
T PTZ00426 27 MKYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKD---- 102 (340)
T ss_pred CChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEe----
Confidence 34567888899999999999999864322 1 455555
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++..++||||+++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 103 -~~~~~lv~Ey~~~g~L~~~i~~~~------~~~~~~~~~~~~qi~~aL~~LH 148 (340)
T PTZ00426 103 -ESYLYLVLEFVIGGEFFTFLRRNK------RFPNDVGCFYAAQIVLIFEYLQ 148 (340)
T ss_pred -CCEEEEEEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998643 5888889999999999999999
|
|
| >cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.6e-10 Score=110.23 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=61.8
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce----------------------------------------eEEEeccccCCCce
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT----------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~----------------------------------------~g~~~~~~~~~~~~ 435 (549)
|...+.||+|+||.||+|.... +.. ++++.. ...
T Consensus 2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~~ 76 (298)
T cd07841 2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGH-----KSN 76 (298)
T ss_pred ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeec-----CCE
Confidence 5667789999999999998753 222 222333 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+ +|+|.++++... ..+++..+..++.|+++||.|||
T Consensus 77 ~~lv~e~~-~~~L~~~i~~~~-----~~~~~~~~~~~~~qi~~al~~lH 119 (298)
T cd07841 77 INLVFEFM-ETDLEKVIKDKS-----IVLTPADIKSYMLMTLRGLEYLH 119 (298)
T ss_pred EEEEEccc-CCCHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999 999999997532 36899999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.4e-11 Score=103.99 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=29.2
Q ss_pred ccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccc-cCCCCCCEEecccCcceecc-cccccccc-cc
Q 039925 104 CSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTL-SNLRSLFYDNINRNEFSGLI-PSFIFNIS-LK 180 (549)
Q Consensus 104 l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~-p~~~~~l~-L~ 180 (549)
+.+| +.|++++|.|+.. +.+..+++|++|++++|+|+ .+.+.+ ..+++|++|++++|++...- -..+..++ |+
T Consensus 41 l~~L-~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 41 LDKL-EVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp -TT---EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hcCC-CEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 3444 4444444444422 12334444555555555554 222222 23455555555555544211 12333444 55
Q ss_pred eeeCCCCcCcccC--chhhhhcCCCCcEeeec
Q 039925 181 WNFLPENSFTGNL--PLEIGVTLPKGRNYYIL 210 (549)
Q Consensus 181 ~L~l~~n~l~~~~--p~~~~~~l~~L~~L~l~ 210 (549)
.|++.+|+++..- -..+...+|+|+.||-.
T Consensus 117 ~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 117 VLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred eeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 5555555554221 11122367777777654
|
|
| >cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-10 Score=109.04 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=64.6
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+|...+.||+|+||.||++.... +.. .+.+.. ....+
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~-----~~~~~ 75 (258)
T cd08215 1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEE-----KGKLC 75 (258)
T ss_pred CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEec-----CCEEE
Confidence 46677889999999999999763 221 222333 56789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|+||+++++|.++++... .....+++.....++.+++.|++|||
T Consensus 76 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lh 120 (258)
T cd08215 76 IVMEYADGGDLSQKIKKQK--KEGKPFPEEQILDWFVQLCLALKYLH 120 (258)
T ss_pred EEEEecCCCcHHHHHHHhh--ccCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997642 01357899999999999999999999
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They |
| >cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.5e-10 Score=111.01 Aligned_cols=84 Identities=24% Similarity=0.206 Sum_probs=70.0
Q ss_pred ccccccCcCCCccccCceecEEEEEeCC-Cc-e---------------------------------eEEEeccccCCCce
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGE-KW-T---------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~-~---------------------------------~g~~~~~~~~~~~~ 435 (549)
...++.|...+.||+|+||.||+|.... +. + .+++.. ...
T Consensus 15 ~~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~ 89 (286)
T cd06614 15 GDPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLV-----GDE 89 (286)
T ss_pred CCccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEE-----CCE
Confidence 3677888889999999999999999862 22 1 344544 578
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++|+||+++++|.+++.... ..+++..+..++.+++.||+|||
T Consensus 90 ~~lv~e~~~~~~L~~~l~~~~-----~~l~~~~~~~i~~~i~~~L~~lH 133 (286)
T cd06614 90 LWVVMEYMDGGSLTDIITQNF-----VRMNEPQIAYVCREVLQGLEYLH 133 (286)
T ss_pred EEEEEeccCCCcHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998642 36899999999999999999999
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou |
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.5e-10 Score=109.30 Aligned_cols=84 Identities=12% Similarity=0.197 Sum_probs=62.0
Q ss_pred cCcCCCccccCceecEEEEEeC-C-Cce----------------------------------------eEEEeccccCCC
Q 039925 396 EFSSSNMIGQGSFGSVYKGILG-E-KWT----------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~-~-~~~----------------------------------------~g~~~~~~~~~~ 433 (549)
.|...+.||+|+||.||+|+.. . +.. +++|........
T Consensus 2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~ 81 (290)
T cd07862 2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE 81 (290)
T ss_pred CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence 5777889999999999999863 2 221 233321111124
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||++ |+|.+++.... ...+++..+..++.|+++||+|||
T Consensus 82 ~~~~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~lH 127 (290)
T cd07862 82 TKLTLVFEHVD-QDLTTYLDKVP----EPGVPTETIKDMMFQLLRGLDFLH 127 (290)
T ss_pred CcEEEEEccCC-CCHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56789999997 69999987543 245889999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.7e-10 Score=108.83 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=63.4
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce-----------------------------------------eEEEeccccCCC
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------------~g~~~~~~~~~~ 433 (549)
+|...+.||+|+||.||+|.... +.. ++++.. .
T Consensus 1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~ 75 (268)
T cd06630 1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCE-----D 75 (268)
T ss_pred CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceecc-----C
Confidence 47788999999999999997532 211 334443 5
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|+|.++++... ++++.....++.|++.|+.|||
T Consensus 76 ~~~~~v~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~ql~~al~~LH 120 (268)
T cd06630 76 SHFNLFVEWMAGGSVSHLLSKYG------AFKEAVIINYTEQLLRGLSYLH 120 (268)
T ss_pred CeEEEEEeccCCCcHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999997543 5888999999999999999999
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their |
| >cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3 | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.5e-10 Score=109.87 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=41.3
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++..++||||+++|+|.+++...+ .++|.....++.|++.|++|||
T Consensus 69 ~~~~~lv~e~~~~~~L~~~i~~~~------~l~~~~~~~i~~qi~~al~~lH 114 (279)
T cd05633 69 PDKLCFILDLMNGGDLHYHLSQHG------VFSEKEMRFYATEIILGLEHMH 114 (279)
T ss_pred CCeEEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999987543 5899999999999999999999
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi |
| >cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.2e-10 Score=110.80 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=65.8
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCceEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
-+.|...+.||+|+||.||+|.... +.. .+.+.. ....+
T Consensus 11 ~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 85 (292)
T cd06644 11 NEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYW-----DGKLW 85 (292)
T ss_pred chhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEe-----CCeEE
Confidence 3567788899999999999998754 222 344444 56789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|..++.... ..+++..+..++.|+++|++|||
T Consensus 86 lv~e~~~~~~l~~~~~~~~-----~~l~~~~~~~~~~ql~~~l~~lH 127 (292)
T cd06644 86 IMIEFCPGGAVDAIMLELD-----RGLTEPQIQVICRQMLEALQYLH 127 (292)
T ss_pred EEEecCCCCcHHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998876533 35899999999999999999999
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. |
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9e-11 Score=115.13 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=63.4
Q ss_pred cccCcCCCccccCceecEEEEEeC-CCce-------------------------------------eEEEeccccCCCc-
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILG-EKWT-------------------------------------AGYSEGTDFKGID- 434 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-------------------------------------~g~~~~~~~~~~~- 434 (549)
.+.|...+.||.|.||.||+|+-. .+.+ ..+.-+ .+
T Consensus 9 m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d-----~~~ 83 (538)
T KOG0661|consen 9 MDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRD-----NDR 83 (538)
T ss_pred HHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhc-----cCc
Confidence 456777788999999999999853 3333 011111 33
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++|||||.. +|+..++.+. ..|+......|+.||.+||+|+|
T Consensus 84 ~L~fVfE~Md~-NLYqLmK~R~-----r~fse~~irnim~QilqGL~hiH 127 (538)
T KOG0661|consen 84 ILYFVFEFMDC-NLYQLMKDRN-----RLFSESDIRNIMYQILQGLAHIH 127 (538)
T ss_pred eEeeeHHhhhh-hHHHHHhhcC-----CcCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999986 9999998754 68999999999999999999999
|
|
| >cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-10 Score=109.03 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=65.2
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
++|...+.||+|+||.||++.... +.. .+.+.. ....+
T Consensus 1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~~~ 75 (265)
T cd06605 1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYN-----NGDIS 75 (265)
T ss_pred CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeec-----CCEEE
Confidence 367777899999999999998763 222 344444 57789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|+||+++++|.+++.... ..++.....+++.|+++|++|||
T Consensus 76 lv~e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lH 117 (265)
T cd06605 76 ICMEYMDGGSLDKILKEVQ-----GRIPERILGKIAVAVLKGLTYLH 117 (265)
T ss_pred EEEEecCCCcHHHHHHHcc-----CCCCHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998642 46788888999999999999999
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity |
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-10 Score=113.42 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=59.5
Q ss_pred CccccCceecEEEEEeCCC-ce--------------------------------------eEEEeccccCCCceEEEEEe
Q 039925 401 NMIGQGSFGSVYKGILGEK-WT--------------------------------------AGYSEGTDFKGIDFKAVVFD 441 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~-~~--------------------------------------~g~~~~~~~~~~~~~~lv~e 441 (549)
++||+|+||.||++..... .. .+++.. .+..++|||
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~~lv~E 75 (328)
T cd05593 1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQT-----KDRLCFVME 75 (328)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEc-----CCEEEEEEe
Confidence 3699999999999986432 21 234444 678899999
Q ss_pred ecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 442 YMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 442 y~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 76 y~~~g~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~LH 112 (328)
T cd05593 76 YVNGGELFFHLSRER------VFSEDRTRFYGAEIVSALDYLH 112 (328)
T ss_pred CCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999987543 5889999999999999999999
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.3e-10 Score=109.67 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=65.4
Q ss_pred cccccCcCCCccccCceecEEEEEeC-CCc-e----------------------------------eEEEeccccCCCce
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG-EKW-T----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~-~----------------------------------~g~~~~~~~~~~~~ 435 (549)
...+.|...+.||+|+||.||+|... ++. + .+++.. .+.
T Consensus 16 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-----~~~ 90 (293)
T cd06647 16 DPKKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLV-----GDE 90 (293)
T ss_pred CchhhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeee-----CCc
Confidence 34567888889999999999999853 222 1 234444 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++|+||+++|+|.+++... .+++..+..++.+++.|+.|||
T Consensus 91 ~~lv~e~~~~~~L~~~~~~~-------~l~~~~~~~i~~~l~~al~~LH 132 (293)
T cd06647 91 LWVVMEYLAGGSLTDVVTET-------CMDEGQIAAVCRECLQALEFLH 132 (293)
T ss_pred EEEEEecCCCCcHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998753 3788899999999999999999
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi |
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.4e-10 Score=107.47 Aligned_cols=81 Identities=22% Similarity=0.268 Sum_probs=66.3
Q ss_pred cccCcCCCccccCceecEEEEEeCCCc-e-----------------------------------eEEEeccccCCCceEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKW-T-----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~-----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
.++|...+.||.|+||.||+|...... . .|++.. ....+
T Consensus 2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~~~~ 76 (262)
T cd06613 2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLR-----RDKLW 76 (262)
T ss_pred ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEe-----CCEEE
Confidence 467888889999999999999875322 1 344444 67789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|||+++++|.+++.... ..+++.....++.|++.|++|||
T Consensus 77 l~~e~~~~~~l~~~~~~~~-----~~l~~~~~~~~~~ql~~~l~~lh 118 (262)
T cd06613 77 IVMEYCGGGSLQDIYQVTR-----GPLSELQIAYVCRETLKGLAYLH 118 (262)
T ss_pred EEEeCCCCCcHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987642 35888999999999999999999
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.6e-10 Score=113.53 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=62.1
Q ss_pred CccccCceecEEEEEeCCCce------------------------------------eEEEeccccCCCceEEEEEeecC
Q 039925 401 NMIGQGSFGSVYKGILGEKWT------------------------------------AGYSEGTDFKGIDFKAVVFDYMQ 444 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~~------------------------------------~g~~~~~~~~~~~~~~lv~ey~~ 444 (549)
-+||+|.||+||-|+..+..+ +|.|.. .++.-+.||-+|
T Consensus 581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~se-----nGf~kIFMEqVP 655 (1226)
T KOG4279|consen 581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSE-----NGFFKIFMEQVP 655 (1226)
T ss_pred EEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCC-----CCeEEEEeecCC
Confidence 379999999999999877665 577777 789999999999
Q ss_pred CCCcccccccCCCCCCCCCC--chhhhHHHHHHHHHHHHHhh
Q 039925 445 NRSLEDWPYQSNNKLKPSSL--SMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 445 ~GsL~~~l~~~~~~~~~~~l--~~~~~~~ia~~va~gl~yLH 484 (549)
||+|.++|+.+- +++ .....--+..||.+||.|||
T Consensus 656 GGSLSsLLrskW-----GPlKDNEstm~fYtkQILeGLkYLH 692 (1226)
T KOG4279|consen 656 GGSLSSLLRSKW-----GPLKDNESTMNFYTKQILEGLKYLH 692 (1226)
T ss_pred CCcHHHHHHhcc-----CCCccchhHHHHHHHHHHHHhhhhh
Confidence 999999999766 344 44555668899999999999
|
|
| >cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.2e-10 Score=108.16 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=65.7
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
++|...+.||+|++|.||+|+..+ +.. .+++.. ....+
T Consensus 1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~ 75 (264)
T cd06623 1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYK-----EGEIS 75 (264)
T ss_pred CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcc-----CCeEE
Confidence 367888999999999999998764 221 344444 57889
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++++|.+++... ..+++..+..++.|+++|++|||
T Consensus 76 lv~e~~~~~~L~~~l~~~------~~l~~~~~~~~~~~l~~~l~~lh 116 (264)
T cd06623 76 IVLEYMDGGSLADLLKKV------GKIPEPVLAYIARQILKGLDYLH 116 (264)
T ss_pred EEEEecCCCcHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999754 36889999999999999999999
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of |
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-10 Score=113.53 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=61.4
Q ss_pred CcCCCccccCceecEEEEEeCCC-ce-----------------------------------------eEEEeccccCCCc
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEK-WT-----------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~-~~-----------------------------------------~g~~~~~~~~~~~ 434 (549)
|...+.||+|+||.||+|..... .. ++++.. .+
T Consensus 1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~-----~~ 75 (324)
T cd05589 1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQT-----ED 75 (324)
T ss_pred CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEc-----CC
Confidence 44567899999999999987532 21 233443 56
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|..+++.. .+++.....++.|++.||.|||
T Consensus 76 ~~~lv~E~~~~~~L~~~~~~~-------~l~~~~~~~~~~qi~~al~~lH 118 (324)
T cd05589 76 HVCFVMEYAAGGDLMMHIHTD-------VFSEPRAVFYAACVVLGLQYLH 118 (324)
T ss_pred EEEEEEcCCCCCcHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999888643 4899999999999999999999
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-11 Score=112.37 Aligned_cols=133 Identities=23% Similarity=0.279 Sum_probs=109.8
Q ss_pred cccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCC
Q 039925 52 HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSA 131 (549)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~ 131 (549)
.+.....|+.+|||+|.|+ .+-+++.-++.++.|++|+|.|. .+. .+..+++| +.||||+|.++ .+..+-.++.+
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L-~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQL-QLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccc-eEeecccchhH-hhhhhHhhhcC
Confidence 3445678999999999999 77788888999999999999998 443 38889999 99999999987 44455567889
Q ss_pred CCEEEeecceeeeeCCccccCCCCCCEEecccCcceecc-cccccccc-cceeeCCCCcCcc
Q 039925 132 IQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLI-PSFIFNIS-LKWNFLPENSFTG 191 (549)
Q Consensus 132 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~-L~~L~l~~n~l~~ 191 (549)
++.|.|+.|.|.. + ..+.++-+|..||+++|+|...- -..+++++ |+++.|.+|.+.+
T Consensus 354 IKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 354 IKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred EeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 9999999999872 2 45778889999999999987432 35788999 9999999999984
|
|
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.4e-10 Score=109.71 Aligned_cols=79 Identities=20% Similarity=0.240 Sum_probs=61.2
Q ss_pred ccCcCCCccccCceecEEEEEeCCCce--------------------------------------eEEEeccccCCCceE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------~g~~~~~~~~~~~~~ 436 (549)
++|...+.||+|+||.||+|+..+... .+++.. .+..
T Consensus 1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~ 75 (287)
T cd07848 1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRR-----RGKL 75 (287)
T ss_pred CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEec-----CCEE
Confidence 357778899999999999999864322 123333 5678
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|.+..+.... ..+++.....++.|++.||+|||
T Consensus 76 ~lv~e~~~~~~l~~~~~~~------~~~~~~~~~~~~~qi~~~L~~lH 117 (287)
T cd07848 76 YLVFEYVEKNMLELLEEMP------NGVPPEKVRSYIYQLIKAIHWCH 117 (287)
T ss_pred EEEEecCCCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999998776554322 35888889999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-11 Score=117.41 Aligned_cols=207 Identities=19% Similarity=0.128 Sum_probs=130.5
Q ss_pred cCCCCCCEEEccCCcceecCC--ccccCCCCCCEeecccccccccC--CcccccccCccceeeeccccccccccc-ccCC
Q 039925 54 GNFGYLRFINLVDNNFRGEIP--EKVGRLFRLEYLLLANNHFSGKI--PANLSHCSNLLTKLFICETHLSGQLLD-FIGN 128 (549)
Q Consensus 54 ~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~~L~Ls~n~l~~~~~~-~~~~ 128 (549)
+++++|+...|.++.+. ..+ .....|++++.||||+|-+.... -.-...+++| +.|+|+.|++.--... .-..
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~L-e~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSL-ENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccc-hhcccccccccCCccccchhh
Confidence 45777888888887766 333 35667888888888888776322 2334677888 8888888887532211 1224
Q ss_pred CCCCCEEEeecceeeee-CCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCch--hhhhcCCCC
Q 039925 129 PSAIQVMIFKENSLEGK-FPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPL--EIGVTLPKG 204 (549)
Q Consensus 129 l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~--~~~~~l~~L 204 (549)
+++|+.|.|+.|.++.. +-..+..+++|+.|+|..|............+. |+.|+|++|++- ..+. ..+ .+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~-~l--- 270 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVG-TL--- 270 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccc-cc---
Confidence 67888888888888621 222345578888888888853333334445556 888888888876 3331 111 33
Q ss_pred cEeeecccccccccccCcccccEEEccccccccc-cChh-----hhhccccCccEEEcCCCcccccCCCcCccccCCccc
Q 039925 205 RNYYILLLAQKLYWSDVSTTATIIAMGGNQISGT-ITLG-----IKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTL 278 (549)
Q Consensus 205 ~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~-~~~~-----~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~ 278 (549)
+.|..|+++.+.+... .|+. ...+ ++|+.|++..|++... +. -..+..+++
T Consensus 271 ------------------~~L~~Lnls~tgi~si~~~d~~s~~kt~~f--~kL~~L~i~~N~I~~w-~s--l~~l~~l~n 327 (505)
T KOG3207|consen 271 ------------------PGLNQLNLSSTGIASIAEPDVESLDKTHTF--PKLEYLNISENNIRDW-RS--LNHLRTLEN 327 (505)
T ss_pred ------------------cchhhhhccccCcchhcCCCccchhhhccc--ccceeeecccCccccc-cc--cchhhccch
Confidence 3555666666666532 1211 1233 8889999999888521 10 234556777
Q ss_pred cCeeeccCcccc
Q 039925 279 LTYLALDNNKLQ 290 (549)
Q Consensus 279 L~~L~Ls~N~l~ 290 (549)
|+.|.+..|.++
T Consensus 328 lk~l~~~~n~ln 339 (505)
T KOG3207|consen 328 LKHLRITLNYLN 339 (505)
T ss_pred hhhhhccccccc
Confidence 888888888877
|
|
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-10 Score=112.15 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=64.7
Q ss_pred ccCcCCCccccCceecEEEEEeCCCc--e-------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKW--T-------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~--~-------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||++...... + ++.+.. ++.
T Consensus 1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~ 75 (305)
T cd05609 1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFET-----KRH 75 (305)
T ss_pred CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEec-----CCE
Confidence 36778889999999999999875432 1 334444 677
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... .+++.....++.++++|++|||
T Consensus 76 ~~lv~e~~~g~~L~~~l~~~~------~~~~~~~~~~~~~i~~~l~~lH 118 (305)
T cd05609 76 LCMVMEYVEGGDCATLLKNIG------ALPVDMARMYFAETVLALEYLH 118 (305)
T ss_pred EEEEEecCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997543 5889888999999999999999
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-10 Score=113.97 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=63.2
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce---------------------------------------eEEEeccccCCCce
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT---------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------------~g~~~~~~~~~~~~ 435 (549)
+|...+.||+|+||.||+|.... +.. .+++.. .+.
T Consensus 1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-----~~~ 75 (323)
T cd05615 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQT-----VDR 75 (323)
T ss_pred CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEec-----CCE
Confidence 46677899999999999998753 322 122333 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... .+++.+...++.|++.||+|||
T Consensus 76 ~~lv~Ey~~~g~L~~~i~~~~------~l~~~~~~~i~~qi~~al~~lH 118 (323)
T cd05615 76 LYFVMEYVNGGDLMYHIQQVG------KFKEPQAVFYAAEISVGLFFLH 118 (323)
T ss_pred EEEEEcCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999987543 5889999999999999999999
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-10 Score=101.42 Aligned_cols=127 Identities=24% Similarity=0.216 Sum_probs=50.6
Q ss_pred ccCCCCCCEEEccCCcceecCCcccc-CCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCC
Q 039925 53 VGNFGYLRFINLVDNNFRGEIPEKVG-RLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSA 131 (549)
Q Consensus 53 ~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~ 131 (549)
+.+..+++.|+|++|.|+ .+. .++ .+.+|+.|+|++|.|+ .++ .+..++.| +.|++++|.|+...+.....+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L-~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRL-KTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT---EEE--SS---S-CHHHHHH-TT
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhh-hhcccCCCCCCccccchHHhCCc
Confidence 445567899999999999 453 455 5889999999999999 454 58889999 99999999998643332346899
Q ss_pred CCEEEeecceeeee-CCccccCCCCCCEEecccCcceecc---cccccccc-cceeeC
Q 039925 132 IQVMIFKENSLEGK-FPNTLSNLRSLFYDNINRNEFSGLI---PSFIFNIS-LKWNFL 184 (549)
Q Consensus 132 L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~---p~~~~~l~-L~~L~l 184 (549)
|++|++++|+|... --..+..+++|+.|+|.+|.+.... ...+..++ |+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 99999999999742 1245678999999999999987431 12455677 888874
|
|
| >cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-10 Score=108.87 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=63.3
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+|...+.||+|+||.||++.... +.. .+++.. ....+
T Consensus 1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~ 75 (256)
T cd08530 1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLD-----GNKLC 75 (256)
T ss_pred CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhcc-----CCEEE
Confidence 36677889999999999998643 222 122222 46789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++++|.+++.... .....+++.....++.++++|++|||
T Consensus 76 ~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~l~~al~~lh 120 (256)
T cd08530 76 IVMEYAPFGDLSKAISKRK--KKRKLIPEQEIWRIFIQLLRGLQALH 120 (256)
T ss_pred EEehhcCCCCHHHHHHHHH--hhcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999987632 12346899999999999999999999
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an |
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.6e-10 Score=113.12 Aligned_cols=73 Identities=21% Similarity=0.191 Sum_probs=59.3
Q ss_pred CccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCceEEEEEe
Q 039925 401 NMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDFKAVVFD 441 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~~~lv~e 441 (549)
+.||+|+||.||++.... +.. .+++.. .+..++|||
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~-----~~~~~lv~E 75 (325)
T cd05594 1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQT-----HDRLCFVME 75 (325)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEc-----CCEEEEEEe
Confidence 369999999999998643 221 233444 678899999
Q ss_pred ecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 442 YMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 442 y~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 76 ~~~~~~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~lH 112 (325)
T cd05594 76 YANGGELFFHLSRER------VFSEDRARFYGAEIVSALDYLH 112 (325)
T ss_pred CCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999887543 5889999999999999999999
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.4e-10 Score=111.25 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=60.7
Q ss_pred cCcCCCccccCceecEEEEEeCCC----c-e---------------------------------------eEEEeccccC
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEK----W-T---------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~----~-~---------------------------------------~g~~~~~~~~ 431 (549)
+|...+.||+|+||.||++...+. . + .+.+..
T Consensus 1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~---- 76 (288)
T cd05583 1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQT---- 76 (288)
T ss_pred CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeec----
Confidence 356678899999999999875321 1 1 122222
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 77 -~~~~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~ql~~~l~~lH 122 (288)
T cd05583 77 -DTKLHLILDYVNGGELFTHLYQRE------HFTESEVRVYIAEIVLALDHLH 122 (288)
T ss_pred -CCEEEEEEecCCCCcHHHHHhhcC------CcCHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999987533 5888888999999999999999
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines |
| >PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-10 Score=110.29 Aligned_cols=76 Identities=24% Similarity=0.382 Sum_probs=64.0
Q ss_pred cCCCccccCceecEEEEEeCCCce--------------------------------------eEEEeccccCCCceEEEE
Q 039925 398 SSSNMIGQGSFGSVYKGILGEKWT--------------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 398 ~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
...+.||+|+||.||++...+... .++... ....++|
T Consensus 2 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-----~~~~~~v 76 (260)
T PF00069_consen 2 RLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQD-----DNYLYIV 76 (260)
T ss_dssp EEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEE-----SSEEEEE
T ss_pred EEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccc-----ccccccc
Confidence 456789999999999999876542 355555 6788999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.+++... ..+++..+..++.|+++||+|||
T Consensus 77 ~~~~~~~~L~~~l~~~------~~~~~~~~~~~~~qi~~~L~~Lh 115 (260)
T PF00069_consen 77 MEYCPGGSLQDYLQKN------KPLSEEEILKIAYQILEALAYLH 115 (260)
T ss_dssp EEEETTEBHHHHHHHH------SSBBHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccc------ccccccccccccccccccccccc
Confidence 9999999999999833 36899999999999999999999
|
Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A .... |
| >cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.9e-10 Score=107.67 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=63.6
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~ 436 (549)
++|.....||+|+||.||+|+... +.. .+++.. ....
T Consensus 1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~~~ 75 (286)
T cd07847 1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRR-----KRKL 75 (286)
T ss_pred CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEee-----CCEE
Confidence 357777889999999999998753 221 334444 5678
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||++++.+..++... ..++|..+..++.|++.||+|||
T Consensus 76 ~~v~e~~~~~~l~~~~~~~------~~~~~~~~~~~~~ql~~~l~~LH 117 (286)
T cd07847 76 HLVFEYCDHTVLNELEKNP------RGVPEHLIKKIIWQTLQAVNFCH 117 (286)
T ss_pred EEEEeccCccHHHHHHhCC------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887643 25899999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio |
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.1e-10 Score=111.17 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=65.4
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCceE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
...+|...+.||.|+||.||+|+... +.. .+.+.. .+..
T Consensus 17 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~ 91 (296)
T cd06655 17 PKKKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLV-----GDEL 91 (296)
T ss_pred CcceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEec-----CceE
Confidence 44568888899999999999998532 221 344544 6788
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|+||+++|+|.+++... .++|.++..++.+++.|++|||
T Consensus 92 ~lv~e~~~~~~L~~~~~~~-------~l~~~~~~~i~~~l~~al~~LH 132 (296)
T cd06655 92 FVVMEYLAGGSLTDVVTET-------CMDEAQIAAVCRECLQALEFLH 132 (296)
T ss_pred EEEEEecCCCcHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998643 4889999999999999999999
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-10 Score=113.43 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=61.9
Q ss_pred cCcCCCccccCceecEEEEEeCC----Cce----------------------------------------eEEEeccccC
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE----KWT----------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~----~~~----------------------------------------~g~~~~~~~~ 431 (549)
+|...+.||+|+||.||+++... +.. .+++..
T Consensus 1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~---- 76 (332)
T cd05614 1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQT---- 76 (332)
T ss_pred CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEec----
Confidence 46777899999999999987632 111 122333
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 77 -~~~~~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH 122 (332)
T cd05614 77 -EAKLHLILDYVSGGEMFTHLYQRD------NFSEDEVRFYSGEIILALEHLH 122 (332)
T ss_pred -CCEEEEEEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999997543 5888889999999999999999
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.8e-10 Score=113.28 Aligned_cols=80 Identities=15% Similarity=0.115 Sum_probs=65.4
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||++.... +.. .+++.. ...
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~-----~~~ 75 (330)
T cd05601 1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQD-----KDN 75 (330)
T ss_pred CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEec-----CCe
Confidence 467888899999999999998753 221 233444 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... ..+++.....++.|+++||+|||
T Consensus 76 ~~lv~e~~~~~~L~~~l~~~~-----~~l~~~~~~~~~~qi~~aL~~lH 119 (330)
T cd05601 76 LYLVMEYQPGGDLLSLLNRYE-----DQFDEDMAQFYLAELVLAIHSVH 119 (330)
T ss_pred EEEEECCCCCCCHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998653 36889989999999999999999
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-09 Score=104.81 Aligned_cols=78 Identities=22% Similarity=0.334 Sum_probs=63.9
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCC--ce
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGI--DF 435 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~--~~ 435 (549)
+|...+.||+|++|.||+|.... +.. .+.+.. . ..
T Consensus 1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~ 75 (260)
T cd06606 1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERD-----EEKNT 75 (260)
T ss_pred CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEec-----CCCCe
Confidence 46777899999999999999763 221 233333 3 67
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++|+||+++++|.+++.... .++|..+..++.++++|++|||
T Consensus 76 ~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~~l~~~l~~lh 118 (260)
T cd06606 76 LNIFLEYVSGGSLSSLLKKFG------KLPEPVIRKYTRQILEGLAYLH 118 (260)
T ss_pred EEEEEEecCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999987542 6899999999999999999999
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK |
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.6e-11 Score=108.24 Aligned_cols=82 Identities=24% Similarity=0.256 Sum_probs=66.9
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce---------------------------------eEEEeccccCCCceEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT---------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..+-|+....||+|+||.|||+..+. |.+ +|.+.. ....++
T Consensus 31 PEEVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK-----~sDLWI 105 (502)
T KOG0574|consen 31 PEEVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDTDLQEIIKEISIMQQCKSKYVVKYYGSYFK-----HSDLWI 105 (502)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccchHHHHHHHHHHHHHcCCchhhhhhhhhcc-----CCceEe
Confidence 44456777789999999999998653 443 333333 567899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||||..|+..+.++.+. ++++......+.++..+||+|||
T Consensus 106 VMEYCGAGSiSDI~R~R~-----K~L~E~EIs~iL~~TLKGL~YLH 146 (502)
T KOG0574|consen 106 VMEYCGAGSISDIMRARR-----KPLSEQEISAVLRDTLKGLQYLH 146 (502)
T ss_pred ehhhcCCCcHHHHHHHhc-----CCccHHHHHHHHHHHHhHHHHHH
Confidence 999999999999998754 68999999999999999999999
|
|
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.2e-11 Score=109.85 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=65.9
Q ss_pred ccccCcCCCccccCceecEEEEEe-CCCce----------------------------------eEEEeccccCCCceEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGIL-GEKWT----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
...+|...+.||+|+||.|||+.. .+|.. +.||...-.+..+..+
T Consensus 17 ~l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evln 96 (375)
T KOG0591|consen 17 TLADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLN 96 (375)
T ss_pred cHHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhH
Confidence 344677888999999999999984 44433 1112100001134478
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+..|+|...++.-+ .....++.+..+++..|.++||.++|
T Consensus 97 ivmE~c~~GDLsqmIk~~K--~qkr~ipE~~Vwk~f~QL~~AL~~cH 141 (375)
T KOG0591|consen 97 IVMELCDAGDLSQMIKHFK--KQKRLIPEKTVWKYFVQLCRALYHCH 141 (375)
T ss_pred HHHHhhcccCHHHHHHHHH--hccccCchHHHHHHHHHHHHHHHHHh
Confidence 9999999999999997544 13467899999999999999999999
|
|
| >cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.8e-10 Score=109.19 Aligned_cols=78 Identities=21% Similarity=0.222 Sum_probs=61.2
Q ss_pred CcCCCccccCceecEEEEEeCCCc-e-------------------------------------eEEEeccccCCCceEEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEKW-T-------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~~-~-------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
|...+.||+|+||.||+|...+.. . .+++.. .+..++
T Consensus 1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~-----~~~~~l 75 (283)
T cd07830 1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRE-----NDELYF 75 (283)
T ss_pred CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhc-----CCcEEE
Confidence 455678999999999999986432 1 011211 567899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+ +|+|.++++... ...++|..+..++.|+++||.|||
T Consensus 76 v~e~~-~~~l~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~Lh 116 (283)
T cd07830 76 VFEYM-EGNLYQLMKDRK----GKPFSESVIRSIIYQILQGLAHIH 116 (283)
T ss_pred EEecC-CCCHHHHHHhcc----cccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999 889999987643 246899999999999999999999
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili |
| >cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=106.91 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=63.4
Q ss_pred cCcCCCccccCceecEEEEEeCCC-ce------------------------------------eEEEeccccCCCceEEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEK-WT------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~-~~------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
+|...+.||+|++|.||+|+.... .. .+++.. .+..++
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~~l 75 (284)
T cd07836 1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHT-----ENKLML 75 (284)
T ss_pred CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEee-----CCcEEE
Confidence 467778999999999999997532 21 344444 567899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++ +|.+++.... ....+++..+..++.|+++||.|||
T Consensus 76 v~e~~~~-~l~~~~~~~~---~~~~~~~~~~~~~~~qi~~~l~~lH 117 (284)
T cd07836 76 VFEYMDK-DLKKYMDTHG---VRGALDPNTVKSFTYQLLKGIAFCH 117 (284)
T ss_pred EEecCCc-cHHHHHHhcC---CCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999984 8988887543 2346899999999999999999999
|
Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. |
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-09 Score=106.38 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=60.2
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
|...+.||+|+||.||+|.... +.. .+++... ..+..++
T Consensus 1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~---~~~~~~l 77 (282)
T cd07831 1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDR---KTGRLAL 77 (282)
T ss_pred CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecC---CCCcEEE
Confidence 3445679999999999998643 221 3444441 0267899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||++ |++.+++.... ..++|..+..++.|++.||+|||
T Consensus 78 v~e~~~-~~l~~~l~~~~-----~~~~~~~~~~~~~qi~~~L~~LH 117 (282)
T cd07831 78 VFELMD-MNLYELIKGRK-----RPLPEKRVKSYMYQLLKSLDHMH 117 (282)
T ss_pred EEecCC-ccHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999997 68888887543 46899999999999999999999
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >PHA03209 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.2e-10 Score=112.92 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=66.6
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce------------------------------eEEEeccccCCCceEEEEEe
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT------------------------------AGYSEGTDFKGIDFKAVVFD 441 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------------~g~~~~~~~~~~~~~~lv~e 441 (549)
....+|...+.||+|+||.||+|+..+... ++++.. ....++|+|
T Consensus 63 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~lv~e 137 (357)
T PHA03209 63 VASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGTTLIEAMLLQNVNHPSVIRMKDTLVS-----GAITCMVLP 137 (357)
T ss_pred hhhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCccccHHHHHHHHhCCCCCCcChhheEEe-----CCeeEEEEE
Confidence 345679999999999999999999864321 345555 567899999
Q ss_pred ecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 442 YMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 442 y~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+. |+|.+++.... ..++|..+..++.|+++||.|||
T Consensus 138 ~~~-~~l~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH 174 (357)
T PHA03209 138 HYS-SDLYTYLTKRS-----RPLPIDQALIIEKQILEGLRYLH 174 (357)
T ss_pred ccC-CcHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 985 68999887543 46899999999999999999999
|
|
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-09 Score=107.22 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=58.8
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceEEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
+|...+.||+|+||.||+|+... +.. ++++.. .+..++
T Consensus 2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~l 76 (279)
T cd06619 2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFV-----ENRISI 76 (279)
T ss_pred cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEE-----CCEEEE
Confidence 56777889999999999998632 221 455555 667889
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|..+. .+++.....++.|++.||.|||
T Consensus 77 v~e~~~~~~l~~~~----------~~~~~~~~~~~~qi~~~l~~lH 112 (279)
T cd06619 77 CTEFMDGGSLDVYR----------KIPEHVLGRIAVAVVKGLTYLW 112 (279)
T ss_pred EEecCCCCChHHhh----------cCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999996552 2567778899999999999999
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-09 Score=106.09 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=62.8
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
|...+.||+|+||.||+|.... +.. .+.+.. .+..++
T Consensus 2 y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-----~~~~~l 76 (264)
T cd06626 2 WQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVH-----REKVYI 76 (264)
T ss_pred ceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEec-----CCEEEE
Confidence 5667889999999999998643 221 344444 577899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+||+++++|.++++... .+++..+..++.++++|++|||
T Consensus 77 v~e~~~~~~L~~~~~~~~------~~~~~~~~~i~~~i~~~l~~lh 116 (264)
T cd06626 77 FMEYCSGGTLEELLEHGR------ILDEHVIRVYTLQLLEGLAYLH 116 (264)
T ss_pred EEecCCCCcHHHHHhhcC------CCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999998543 4788889999999999999999
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 |
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=98.98 E-value=6e-10 Score=111.65 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=59.6
Q ss_pred CccccCceecEEEEEeCCCce----------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEKWT----------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~~----------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+.||+|+||.||+|....+.. .+++.. ....++||
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-----~~~~~lv~ 75 (327)
T cd05617 1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQT-----TSRLFLVI 75 (327)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEe-----CCEEEEEE
Confidence 469999999999998754321 233333 56789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.+++.... .+++..+..++.|+++|++|||
T Consensus 76 e~~~~~~L~~~~~~~~------~l~~~~~~~~~~qi~~al~~lH 113 (327)
T cd05617 76 EYVNGGDLMFHMQRQR------KLPEEHARFYAAEICIALNFLH 113 (327)
T ss_pred eCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887543 5899999999999999999999
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.5e-10 Score=109.51 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=64.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~ 432 (549)
.....|...+.||+|+||.||+|.... +.. .++|..
T Consensus 12 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~----- 86 (307)
T cd06607 12 DPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLR----- 86 (307)
T ss_pred CcchhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEe-----
Confidence 455668888999999999999998643 221 355555
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||++ |++.+++.... ..+++..+..++.|++.||.|||
T Consensus 87 ~~~~~lv~e~~~-g~l~~~~~~~~-----~~l~~~~~~~~~~ql~~~L~~LH 132 (307)
T cd06607 87 EHTAWLVMEYCL-GSASDILEVHK-----KPLQEVEIAAICHGALQGLAYLH 132 (307)
T ss_pred CCeEEEEHHhhC-CCHHHHHHHcc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 667899999997 67777765433 35899999999999999999999
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.1e-11 Score=114.70 Aligned_cols=206 Identities=16% Similarity=0.165 Sum_probs=103.5
Q ss_pred cCCCCCCEeecccccccccCC--cccccccCccceeeecccccccc--cccccCCCCCCCEEEeecceeeeeCCcc-ccC
Q 039925 78 GRLFRLEYLLLANNHFSGKIP--ANLSHCSNLLTKLFICETHLSGQ--LLDFIGNPSAIQVMIFKENSLEGKFPNT-LSN 152 (549)
Q Consensus 78 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~ 152 (549)
.++.+|+.+.|.++.+. ..+ .....|+++ +.||||+|-+..- +......+++|+.|+|+.|++..-.... -..
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v-~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNV-RDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcc-eeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 35667777777777766 233 244566676 7777777766532 2234455666777777766665111110 113
Q ss_pred CCCCCEEecccCcceec-ccccccccc-cceeeCCCCcCcc--cCchhhhhcCCCCcEeeecccccccccccCcccccEE
Q 039925 153 LRSLFYDNINRNEFSGL-IPSFIFNIS-LKWNFLPENSFTG--NLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATII 228 (549)
Q Consensus 153 l~~L~~L~L~~n~l~~~-~p~~~~~l~-L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L 228 (549)
++.|+.|.|+.|.++.. +-......+ |+.|+|..|.... ..+. ..+..|+.|
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~------------------------~i~~~L~~L 251 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST------------------------KILQTLQEL 251 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh------------------------hhhhHHhhc
Confidence 45555566665555421 111122333 5555555553110 0111 122356666
Q ss_pred Ecccccccccc-ChhhhhccccCccEEEcCCCcccccCCCcCccc-----cCCccccCeeeccCccccc-cCCccccCCC
Q 039925 229 AMGGNQISGTI-TLGIKKLIFVNLYALTMVKNKLSGPIPHHIASS-----LGNLTLLTYLALDNNKLQG-NLPSSLGYYQ 301 (549)
Q Consensus 229 ~l~~n~l~~~~-~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~-----l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~ 301 (549)
+|++|++-... -.....+ +.|..|+++.+.+.. + .+|+. ...+++|++|+++.|++.. ..-..+..++
T Consensus 252 dLs~N~li~~~~~~~~~~l--~~L~~Lnls~tgi~s-i--~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~ 326 (505)
T KOG3207|consen 252 DLSNNNLIDFDQGYKVGTL--PGLNQLNLSSTGIAS-I--AEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLE 326 (505)
T ss_pred cccCCcccccccccccccc--cchhhhhccccCcch-h--cCCCccchhhhcccccceeeecccCccccccccchhhccc
Confidence 66666655321 1223344 666666666666652 2 11332 3445666667776666641 1112344455
Q ss_pred CCCEEEccCCccc
Q 039925 302 NLMELSVSRNKLS 314 (549)
Q Consensus 302 ~L~~L~Ls~N~l~ 314 (549)
+|+.|.+..|.++
T Consensus 327 nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 327 NLKHLRITLNYLN 339 (505)
T ss_pred hhhhhhccccccc
Confidence 5666666666655
|
|
| >cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-09 Score=109.48 Aligned_cols=79 Identities=23% Similarity=0.244 Sum_probs=62.7
Q ss_pred ccCcCCCccccCceecEEEEEeCCCc-e--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKW-T--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~-~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
..|...+.||+|+||.||+|+..+.. . .+++.. ...
T Consensus 25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~ 99 (317)
T cd06635 25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLR-----EHT 99 (317)
T ss_pred hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-----CCe
Confidence 44788889999999999999874322 1 345554 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||++ |++.+.+.... .+++|..+..++.+++.|+.|||
T Consensus 100 ~~lv~e~~~-g~l~~~~~~~~-----~~l~~~~~~~i~~~i~~~l~~lH 142 (317)
T cd06635 100 AWLVMEYCL-GSASDLLEVHK-----KPLQEVEIAAITHGALQGLAYLH 142 (317)
T ss_pred EEEEEeCCC-CCHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999997 58877776433 45899999999999999999999
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron |
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.9e-10 Score=112.09 Aligned_cols=73 Identities=26% Similarity=0.236 Sum_probs=59.3
Q ss_pred CccccCceecEEEEEeCC-Cce---------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGE-KWT---------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~-~~~---------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+.||+|+||.||+|+... +.. .+++.. .+..++||
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~-----~~~~~lv~ 75 (323)
T cd05575 1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQT-----ADKLYFVL 75 (323)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEe-----CCEEEEEE
Confidence 369999999999999753 322 233333 56789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.++++... .+++.....++.|+++||+|||
T Consensus 76 e~~~~g~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH 113 (323)
T cd05575 76 DYVNGGELFFHLQRER------SFPEPRARFYAAEIASALGYLH 113 (323)
T ss_pred cCCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987543 5788888899999999999999
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3 | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.5e-10 Score=108.45 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=62.4
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+|...+.||+|+||.||+|+... +.. .+++.. .+..+
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 75 (284)
T cd07860 1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-----ENKLY 75 (284)
T ss_pred CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhccc-----CCcEE
Confidence 47778899999999999998753 222 233333 56789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||++ ++|.+++.... ...+++.....++.|+++|++|||
T Consensus 76 ~v~e~~~-~~l~~~~~~~~----~~~l~~~~~~~~~~~i~~~l~~lh 117 (284)
T cd07860 76 LVFEFLH-QDLKKFMDASP----LSGIPLPLIKSYLFQLLQGLAFCH 117 (284)
T ss_pred EEeeccc-cCHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999996 68998887543 346899999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex |
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-09 Score=108.10 Aligned_cols=79 Identities=16% Similarity=0.320 Sum_probs=63.1
Q ss_pred ccCcCCCccccCceecEEEEEeCCCc--e-----------------------------------eEEEeccccCCCceEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKW--T-----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~--~-----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
++|...+.||+|+||.||+|+..... + ++++.. ....+
T Consensus 6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~-----~~~~~ 80 (301)
T cd07873 6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHT-----EKSLT 80 (301)
T ss_pred cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEec-----CCeEE
Confidence 46788889999999999999875322 1 344444 56789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||++ |+|.+++.... ..+++.....++.|+++||+|||
T Consensus 81 lv~e~~~-~~l~~~l~~~~-----~~~~~~~~~~~~~qi~~aL~~lH 121 (301)
T cd07873 81 LVFEYLD-KDLKQYLDDCG-----NSINMHNVKLFLFQLLRGLNYCH 121 (301)
T ss_pred EEEeccc-cCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999998 68998887543 35788889999999999999999
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-10 Score=112.51 Aligned_cols=85 Identities=18% Similarity=0.282 Sum_probs=64.9
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce-----------------------------------eEEEeccccCCCce-EE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------AGYSEGTDFKGIDF-KA 437 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------~g~~~~~~~~~~~~-~~ 437 (549)
.++|...+++|+|+||.++..+.+.... ..|... +...+. .+
T Consensus 3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds--~~~~~~~l~ 80 (426)
T KOG0589|consen 3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDS--FEEDGQLLC 80 (426)
T ss_pred cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccc--hhcCCceEE
Confidence 4577788899999999998776543221 122111 111344 89
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+|++||++++.|...+ +.-++..+.+++..|+..|+.|||
T Consensus 81 Ivm~Y~eGg~l~~~i~~~k----~~~f~E~~i~~~~~Q~~~av~ylH 123 (426)
T KOG0589|consen 81 IVMEYCEGGDLAQLIKEQK----GVLFPEERILKWFVQILLAVNYLH 123 (426)
T ss_pred EEEeecCCCCHHHHHHHHh----hccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765 456888899999999999999999
|
|
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.7e-10 Score=106.86 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=59.0
Q ss_pred CccccCceecEEEEEeCC-Cce---------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGE-KWT---------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~-~~~---------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+.||+|+||.||+|.... +.. .+++.. .+..++||
T Consensus 2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-----~~~~~lv~ 76 (260)
T cd05611 2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQS-----KDYLYLVM 76 (260)
T ss_pred ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEc-----CCeEEEEE
Confidence 468999999999998743 221 233433 56789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.++++... .+++.....++.|++.||.|||
T Consensus 77 e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~lH 114 (260)
T cd05611 77 EYLNGGDCASLIKTLG------GLPEDWAKQYIAEVVLGVEDLH 114 (260)
T ss_pred eccCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997543 5788888999999999999999
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-09 Score=110.33 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=65.9
Q ss_pred ccccccCcCCCccccCceecEEEEEeCC-Cce------------------------eEEEec------cccCCCceEEEE
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------AGYSEG------TDFKGIDFKAVV 439 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------~g~~~~------~~~~~~~~~~lv 439 (549)
......|..-..||+|+.|.||.+.-.. +.. .++... ..|-..+..++|
T Consensus 269 ~dP~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVV 348 (550)
T KOG0578|consen 269 GDPRSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVV 348 (550)
T ss_pred CChhhhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEE
Confidence 4566678888899999999999998533 222 011000 001125789999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||++|+|.+.+... .++..+...|++++.+||+|||
T Consensus 349 MEym~ggsLTDvVt~~-------~~~E~qIA~Icre~l~aL~fLH 386 (550)
T KOG0578|consen 349 MEYMEGGSLTDVVTKT-------RMTEGQIAAICREILQGLKFLH 386 (550)
T ss_pred EeecCCCchhhhhhcc-------cccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998754 4899999999999999999999
|
|
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-09 Score=105.64 Aligned_cols=80 Identities=15% Similarity=0.285 Sum_probs=62.7
Q ss_pred cccCcCCCccccCceecEEEEEeCCC-ce------------------------------------eEEEeccccCCCceE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEK-WT------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~------------------------------------~g~~~~~~~~~~~~~ 436 (549)
.++|...+.||+|+||.||+|..... .. ++++.. ....
T Consensus 4 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~~ 78 (288)
T cd07871 4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHT-----ERCL 78 (288)
T ss_pred cccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcC-----CCeE
Confidence 35688889999999999999986532 21 233333 5678
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||++ |+|.+++.... ..+++.....++.|+++||+|||
T Consensus 79 ~lv~e~~~-~~l~~~l~~~~-----~~~~~~~~~~~~~qi~~aL~~LH 120 (288)
T cd07871 79 TLVFEYLD-SDLKQYLDNCG-----NLMSMHNVKIFMFQLLRGLSYCH 120 (288)
T ss_pred EEEEeCCC-cCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998 59999887543 35788888999999999999999
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-09 Score=105.26 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=62.6
Q ss_pred ccCcCCCcc--ccCceecEEEEEeCCC-ce-------------------------------eEEEeccccCCCceEEEEE
Q 039925 395 NEFSSSNMI--GQGSFGSVYKGILGEK-WT-------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 395 ~~~~~~~~l--G~G~~g~Vy~~~~~~~-~~-------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
++|...+.+ |+|+||.||++..... .. .+++.. .+..++||
T Consensus 14 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~-----~~~~~iv~ 88 (267)
T PHA03390 14 KNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAIEPMVHQLMKDNPNFIKLYYSVTT-----LKGHVLIM 88 (267)
T ss_pred HhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchhhHHHHHHhhcCCCEEEEEEEEec-----CCeeEEEE
Confidence 345554555 9999999999986433 22 233444 56789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.++++... .++|.....++.|+++|+.|||
T Consensus 89 e~~~~~~L~~~l~~~~------~l~~~~~~~~~~qi~~~l~~lH 126 (267)
T PHA03390 89 DYIKDGDLFDLLKKEG------KLSEAEVKKIIRQLVEALNDLH 126 (267)
T ss_pred EcCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997542 6899999999999999999999
|
|
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-09 Score=109.79 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=58.4
Q ss_pred CccccCceecEEEEEeCC----Cce---------------------------------------eEEEeccccCCCceEE
Q 039925 401 NMIGQGSFGSVYKGILGE----KWT---------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~----~~~---------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+.||+|+||.||+++... +.. ++++.. ++..+
T Consensus 2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~-----~~~~~ 76 (323)
T cd05584 2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQT-----GGKLY 76 (323)
T ss_pred ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEec-----CCeEE
Confidence 579999999999998632 111 344444 66789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.++++... .+.+.....++.|+++||+|||
T Consensus 77 lv~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH 117 (323)
T cd05584 77 LILEYLSGGELFMHLEREG------IFMEDTACFYLSEISLALEHLH 117 (323)
T ss_pred EEEeCCCCchHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997543 5777788889999999999999
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >cd05122 PKc_STE Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-09 Score=103.13 Aligned_cols=79 Identities=25% Similarity=0.317 Sum_probs=64.6
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCceEEEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
+|...+.||+|++|.||++.... +.. .+.+.. ....+++
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~l~ 75 (253)
T cd05122 1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLK-----KDELWIV 75 (253)
T ss_pred CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----CCeEEEE
Confidence 46777889999999999999863 321 233433 5678999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||+++++|.+++.... ..+++..+..++.++++|+.|||
T Consensus 76 ~e~~~~~~L~~~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lh 115 (253)
T cd05122 76 MEFCSGGSLKDLLKSTN-----QTLTESQIAYVCKELLKGLEYLH 115 (253)
T ss_pred EecCCCCcHHHHHhhcC-----CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999987642 46899999999999999999999
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core |
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-09 Score=109.43 Aligned_cols=46 Identities=22% Similarity=0.058 Sum_probs=41.0
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 68 ~~~~~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~~~~qil~al~~LH 113 (330)
T cd05586 68 DSDLYLVTDYMSGGELFWHLQKEG------RFSEDRAKFYIAELVLALEHLH 113 (330)
T ss_pred CCeEEEEEcCCCCChHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999987543 5888899999999999999999
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-09 Score=105.94 Aligned_cols=82 Identities=17% Similarity=0.269 Sum_probs=64.4
Q ss_pred cccCcCCCccccCceecEEEEEeCCC-ce-------------------------------------eEEEeccccCCCce
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEK-WT-------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~-------------------------------------~g~~~~~~~~~~~~ 435 (549)
-++|...+.||+|+||.||+|..... .. .+++.. .....
T Consensus 4 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~---~~~~~ 80 (293)
T cd07843 4 VDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVG---SNLDK 80 (293)
T ss_pred hhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEe---cCCCc
Confidence 35788889999999999999998642 21 233333 11278
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||++ ++|.+++.... ..+++.....++.|++.||+|||
T Consensus 81 ~~lv~e~~~-~~L~~~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH 123 (293)
T cd07843 81 IYMVMEYVE-HDLKSLMETMK-----QPFLQSEVKCLMLQLLSGVAHLH 123 (293)
T ss_pred EEEEehhcC-cCHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999998 59999887543 36899999999999999999999
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the |
| >cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.8e-10 Score=106.51 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=41.4
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.++++... .+++..+..++.|+++||+|||
T Consensus 65 ~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~L~~lH 110 (265)
T cd05579 65 KKNLYLVMEYLPGGDLASLLENVG------SLDEDVARIYIAEIVLALEYLH 110 (265)
T ss_pred CcEEEEEEecCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999997543 6899999999999999999999
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re |
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.3e-10 Score=112.63 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=64.6
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+|.... +.. ++++.. .+.
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~ 75 (350)
T cd05573 1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQD-----EEH 75 (350)
T ss_pred CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheec-----CCe
Confidence 367788899999999999999763 322 122333 677
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 76 ~~lv~e~~~~~~L~~~l~~~~------~l~~~~~~~i~~qi~~aL~~LH 118 (350)
T cd05573 76 LYLVMEYMPGGDLMNLLIRKD------VFPEETARFYIAELVLALDSVH 118 (350)
T ss_pred EEEEEcCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998643 5888889999999999999999
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-09 Score=104.21 Aligned_cols=78 Identities=26% Similarity=0.378 Sum_probs=63.4
Q ss_pred cCcCCCccccCceecEEEEEeCCCc-e-------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKW-T-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~-~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+|...+.||+|++|.||+|...... . .+++.. ....+
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~ 75 (254)
T cd06627 1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIET-----SDSLY 75 (254)
T ss_pred CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEe-----CCEEE
Confidence 3667788999999999999875322 1 233333 56789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++++|.+++... ..+++..+..++.|++.|+.|||
T Consensus 76 ~v~e~~~~~~L~~~~~~~------~~l~~~~~~~~~~~i~~~l~~lH 116 (254)
T cd06627 76 IILEYAENGSLRQIIKKF------GPFPESLVAVYVYQVLQGLAYLH 116 (254)
T ss_pred EEEecCCCCcHHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998754 36899999999999999999999
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast |
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-09 Score=108.14 Aligned_cols=81 Identities=20% Similarity=0.155 Sum_probs=63.3
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCce
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~ 435 (549)
...+.|.....||+|+||.||++.... +.. .+.+.. .+.
T Consensus 19 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~-----~~~ 93 (292)
T cd06658 19 DPREYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLV-----GDE 93 (292)
T ss_pred chHHHHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheec-----CCe
Confidence 344455556779999999999998643 221 233333 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++... .+++.....++.+++.||+|||
T Consensus 94 ~~lv~e~~~~~~L~~~~~~~-------~l~~~~~~~~~~qi~~~l~~LH 135 (292)
T cd06658 94 LWVVMEFLEGGALTDIVTHT-------RMNEEQIATVCLSVLRALSYLH 135 (292)
T ss_pred EEEEEeCCCCCcHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998642 4788999999999999999999
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.5e-10 Score=110.10 Aligned_cols=73 Identities=23% Similarity=0.210 Sum_probs=59.4
Q ss_pred CccccCceecEEEEEeCC-Cce---------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGE-KWT---------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~-~~~---------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+.||+|+||.||+|+... +.. .+++.. .+..++||
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~-----~~~~~lv~ 75 (325)
T cd05604 1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQT-----TEKLYFVL 75 (325)
T ss_pred CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEec-----CCEEEEEE
Confidence 469999999999998643 322 233444 67889999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|..++.... .+++.....++.|+++||+|||
T Consensus 76 e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~al~~lH 113 (325)
T cd05604 76 DFVNGGELFFHLQRER------SFPEPRARFYAAEIASALGYLH 113 (325)
T ss_pred cCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887543 6888899999999999999999
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-09 Score=109.79 Aligned_cols=81 Identities=19% Similarity=0.228 Sum_probs=59.5
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
|...+.||+|+||.||+|+... +.. .+++...........++
T Consensus 2 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~l 81 (338)
T cd07859 2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYV 81 (338)
T ss_pred eEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEE
Confidence 5667889999999999998643 221 12222211111234799
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||++ ++|.+++.... .+++.....++.|+++||+|||
T Consensus 82 v~e~~~-~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH 120 (338)
T cd07859 82 VFELME-SDLHQVIKAND------DLTPEHHQFFLYQLLRALKYIH 120 (338)
T ss_pred EEecCC-CCHHHHHHhcc------cCCHHHHHHHHHHHHHHHHHHH
Confidence 999996 68999887543 5889999999999999999999
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-09 Score=103.66 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=62.8
Q ss_pred ccCcCCCccccCceecEEEEEeCCCc-e----------------------------------------eEEEeccccCCC
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKW-T----------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~-~----------------------------------------~g~~~~~~~~~~ 433 (549)
.+|...+.||+|+||.||+|...+.. . .+++.. ...
T Consensus 2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~ 78 (265)
T cd06652 2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRD---PME 78 (265)
T ss_pred CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEecc---CCC
Confidence 57888999999999999999875422 1 122221 112
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++|+|.+++.... .+++...++++.+++.||+|||
T Consensus 79 ~~~~~v~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~l~~~l~~lH 123 (265)
T cd06652 79 RTLSIFMEHMPGGSIKDQLKSYG------ALTENVTRKYTRQILEGVSYLH 123 (265)
T ss_pred ceEEEEEEecCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999987543 4788888999999999999999
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re |
| >cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.3e-10 Score=106.51 Aligned_cols=78 Identities=22% Similarity=0.171 Sum_probs=62.5
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCceE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~~ 436 (549)
+|...+.||.|+||.||+|.... +.. .+.+ ......
T Consensus 1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----~~~~~~ 75 (258)
T cd05578 1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSF-----QDEENM 75 (258)
T ss_pred CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhh-----cCCCeE
Confidence 46677889999999999998753 222 1112 225678
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|+||+++++|.+++... ..+++.....++.|+++|+.|||
T Consensus 76 ~lv~e~~~~~~L~~~l~~~------~~l~~~~~~~~~~~i~~~l~~lh 117 (258)
T cd05578 76 YLVVDLLLGGDLRYHLSQK------VKFSEEQVKFWICEIVLALEYLH 117 (258)
T ss_pred EEEEeCCCCCCHHHHHHhc------CCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999754 25888899999999999999999
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. |
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.9e-10 Score=109.98 Aligned_cols=73 Identities=25% Similarity=0.238 Sum_probs=58.4
Q ss_pred CccccCceecEEEEEeCCCce----------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEKWT----------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~~----------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+.||+|+||.||+|+...... .+++.. .+..++||
T Consensus 1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~-----~~~~~lv~ 75 (325)
T cd05602 1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQT-----ADKLYFVL 75 (325)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEc-----CCeEEEEE
Confidence 369999999999998754321 233333 66789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.+++.... .+.......++.|+++||+|||
T Consensus 76 e~~~~~~L~~~~~~~~------~~~~~~~~~~~~qi~~~L~~lH 113 (325)
T cd05602 76 DYINGGELFYHLQRER------CFLEPRARFYAAEIASALGYLH 113 (325)
T ss_pred eCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997543 4667777789999999999999
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-09 Score=120.35 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=67.1
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce--------------------------------------eEEEeccccCCCc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------~g~~~~~~~~~~~ 434 (549)
..++|...+.||+|+||.||+|....... ++++.. ....
T Consensus 11 ~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~d---e~~~ 87 (1021)
T PTZ00266 11 RLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLN---KANQ 87 (1021)
T ss_pred ccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEe---cCCC
Confidence 45678889999999999999998754321 233322 1145
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.++|.... .....+++...+.|+.||+.||+|||
T Consensus 88 ~lyIVMEY~~gGSL~~lL~k~~--~~~g~L~E~~Il~Ia~QIL~ALaYLH 135 (1021)
T PTZ00266 88 KLYILMEFCDAGDLSRNIQKCY--KMFGKIEEHAIVDITRQLLHALAYCH 135 (1021)
T ss_pred EEEEEEeCCCCCcHHHHHHHHh--hccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999997532 01246899999999999999999999
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-09 Score=117.42 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=65.2
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+|+... +.. ++++.. .+.
T Consensus 2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d-----~~~ 76 (932)
T PRK13184 2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSD-----GDP 76 (932)
T ss_pred CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEee-----CCE
Confidence 467888899999999999998753 221 345554 677
Q ss_pred EEEEEeecCCCCcccccccCCC-----CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNN-----KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~-----~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++..... .......++...++++.|+++||+|||
T Consensus 77 lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLH 130 (932)
T PRK13184 77 VYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVH 130 (932)
T ss_pred EEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999864210 011234677888999999999999999
|
|
| >cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.7e-09 Score=103.71 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=61.9
Q ss_pred cCcCCCccccCceecEEEEEeCCCc-e-------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKW-T-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~-~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+|...+.||+|+||.||+|...+.. . .+++.. .+..+
T Consensus 2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~ 76 (288)
T cd07833 2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRR-----KGRLY 76 (288)
T ss_pred ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEE-----CCEEE
Confidence 5777889999999999999876432 1 334444 56789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||++++.+..+.... ..+++.....++.+|+.|++|||
T Consensus 77 iv~e~~~~~~l~~~~~~~------~~~~~~~~~~~~~~i~~~l~~LH 117 (288)
T cd07833 77 LVFEYVERTLLELLEASP------GGLPPDAVRSYIWQLLQAIAYCH 117 (288)
T ss_pred EEEecCCCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999988777665532 35889999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning |
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-09 Score=106.46 Aligned_cols=80 Identities=15% Similarity=0.276 Sum_probs=63.0
Q ss_pred cccCcCCCccccCceecEEEEEeCCCc--e-----------------------------------eEEEeccccCCCceE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKW--T-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~--~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
.++|...+.||+|+||.||+|+..... + .+++.. .+..
T Consensus 5 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~ 79 (309)
T cd07872 5 METYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHT-----DKSL 79 (309)
T ss_pred CCceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEee-----CCeE
Confidence 356788889999999999999865322 1 344544 6678
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++ +|.+++.... ..+++.....++.|+++||+|||
T Consensus 80 ~lv~e~~~~-~l~~~~~~~~-----~~~~~~~~~~~~~qi~~aL~~lH 121 (309)
T cd07872 80 TLVFEYLDK-DLKQYMDDCG-----NIMSMHNVKIFLYQILRGLAYCH 121 (309)
T ss_pred EEEEeCCCC-CHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999985 8888876543 35788888899999999999999
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-09 Score=120.61 Aligned_cols=86 Identities=21% Similarity=0.352 Sum_probs=46.3
Q ss_pred ccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCC
Q 039925 53 VGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAI 132 (549)
Q Consensus 53 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L 132 (549)
|..++.|++|||++|.=-+.+|+++++|-+||+|+|+++.+. .+|.++.+++.| .+|++..+.-...+|.....|++|
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L-~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL-IYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh-heeccccccccccccchhhhcccc
Confidence 444555555555554433355555555555555555555555 555555555555 555555554443444444455555
Q ss_pred CEEEeecc
Q 039925 133 QVMIFKEN 140 (549)
Q Consensus 133 ~~L~L~~n 140 (549)
++|.+...
T Consensus 645 r~L~l~~s 652 (889)
T KOG4658|consen 645 RVLRLPRS 652 (889)
T ss_pred cEEEeecc
Confidence 55555443
|
|
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-09 Score=109.33 Aligned_cols=73 Identities=26% Similarity=0.221 Sum_probs=58.6
Q ss_pred CccccCceecEEEEEeCCC-ce---------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEK-WT---------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~-~~---------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
++||+|+||.||+|+..+. .. .+++.. .+..++||
T Consensus 1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~-----~~~~~lv~ 75 (321)
T cd05603 1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQT-----AEKLYFVL 75 (321)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEc-----CCEEEEEE
Confidence 3699999999999997543 21 233444 67789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|..++.... .++......++.||++||+|||
T Consensus 76 e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~L~~lH 113 (321)
T cd05603 76 DYVNGGELFFHLQRER------CFLEPRARFYAAEVASAIGYLH 113 (321)
T ss_pred cCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887543 5777788889999999999999
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.9e-09 Score=104.33 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=62.6
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
|...+.||+|+||.||+|.... +.. .+++.. ....++
T Consensus 2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~~~~ 76 (286)
T cd07832 2 YKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPH-----GSGFVL 76 (286)
T ss_pred ceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEec-----CCeeEE
Confidence 5667789999999999999753 221 334443 567899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+ +++|.++++... ..+++.++..++.|+++||+|||
T Consensus 77 v~e~~-~~~L~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH 116 (286)
T cd07832 77 VMEYM-PSDLSEVLRDEE-----RPLPEAQVKSYMRMLLKGVAYMH 116 (286)
T ss_pred Eeccc-CCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999987543 46899999999999999999999
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea |
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-09 Score=105.54 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=62.7
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCceEEEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
.|...+.||+|++|.||+|.... +.. .+++.. .+..++|
T Consensus 20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~-----~~~~~~v 94 (285)
T cd06648 20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLV-----GDELWVV 94 (285)
T ss_pred hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEc-----CCeEEEE
Confidence 56667789999999999998643 221 344444 5778999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||+++++|.+++... .+++..+..++.+++.|++|||
T Consensus 95 ~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~ql~~~l~~lH 132 (285)
T cd06648 95 MEFLEGGALTDIVTHT-------RMNEEQIATVCLAVLKALSFLH 132 (285)
T ss_pred EeccCCCCHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998752 4788899999999999999999
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.4e-09 Score=102.46 Aligned_cols=83 Identities=16% Similarity=0.224 Sum_probs=60.8
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce----------------------------------------eEEEeccccCCCce
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT----------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~----------------------------------------~g~~~~~~~~~~~~ 435 (549)
|...+.||+|+||.||+|+... +.. .+++...+..+...
T Consensus 1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~ 80 (287)
T cd07838 1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK 80 (287)
T ss_pred CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence 4556789999999999999864 322 23343311111223
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+++|||++ ++|.+++.... ...++|..+..++.|+++||.|||
T Consensus 81 ~~l~~e~~~-~~l~~~l~~~~----~~~l~~~~~~~~~~~i~~al~~LH 124 (287)
T cd07838 81 LTLVFEHVD-QDLATYLSKCP----KPGLPPETIKDLMRQLLRGVDFLH 124 (287)
T ss_pred eEEEehhcc-cCHHHHHHHcc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999997 48988887543 235899999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both |
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.7e-09 Score=103.20 Aligned_cols=85 Identities=20% Similarity=0.155 Sum_probs=68.1
Q ss_pred ccccCcCCCccccCceecEEEEEe-CCCce----------------------------------eEEEeccccCCCceEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGIL-GEKWT----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
..++|....+||.|..++||+|+. +.+.+ ..+|.... ....+
T Consensus 24 n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv---~~~LW 100 (516)
T KOG0582|consen 24 NAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVV---DSELW 100 (516)
T ss_pred CccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEe---cceeE
Confidence 456788899999999999999986 33333 12333222 67899
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||.||.+||+.+.++..- ...++......|.+++.+||.|||
T Consensus 101 vVmpfMa~GS~ldIik~~~----~~Gl~E~~Ia~iLre~LkaL~YLH 143 (516)
T KOG0582|consen 101 VVMPFMAGGSLLDIIKTYY----PDGLEEASIATILREVLKALDYLH 143 (516)
T ss_pred EeehhhcCCcHHHHHHHHc----cccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998654 345888888999999999999999
|
|
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.6e-09 Score=103.83 Aligned_cols=83 Identities=16% Similarity=0.251 Sum_probs=60.4
Q ss_pred CcCCCccccCceecEEEEEeCCC-ce----------------------------------------eEEEeccccCCCce
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEK-WT----------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~-~~----------------------------------------~g~~~~~~~~~~~~ 435 (549)
|...+.||+|+||.||+|+..+. .. ++++..........
T Consensus 2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~ 81 (288)
T cd07863 2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETK 81 (288)
T ss_pred ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCce
Confidence 56678899999999999987532 21 12222111112345
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||++ ++|.++++... ...+++.....++.|++.||+|||
T Consensus 82 ~~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~~qi~~al~~lH 125 (288)
T cd07863 82 VTLVFEHVD-QDLRTYLDKVP----PPGLPAETIKDLMRQFLRGLDFLH 125 (288)
T ss_pred EEEEEcccc-cCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 789999998 58988887543 245889999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-09 Score=105.27 Aligned_cols=87 Identities=20% Similarity=0.228 Sum_probs=63.6
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC-ce-------------------------------------eEEEeccc----
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK-WT-------------------------------------AGYSEGTD---- 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~-------------------------------------~g~~~~~~---- 429 (549)
.+.++|...+.||+|+||.||+|..... .. .+++....
T Consensus 4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~ 83 (302)
T cd07864 4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD 83 (302)
T ss_pred hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence 3567889999999999999999998542 22 22222200
Q ss_pred -cCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 -FKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 -~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.......++|+||+++ ++.+.+.... ..+++.....++.|++.||+|||
T Consensus 84 ~~~~~~~~~lv~e~~~~-~l~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH 133 (302)
T cd07864 84 FKKDKGAFYLVFEYMDH-DLMGLLESGL-----VHFSEDHIKSFMKQLLEGLNYCH 133 (302)
T ss_pred ccccCCcEEEEEcccCc-cHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 0012368899999986 6777766432 46899999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely |
| >cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-09 Score=104.92 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=61.2
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
|...+.||.|++|.||+|.... +.. .+++.. .+..++
T Consensus 1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~-----~~~~~i 75 (283)
T cd07835 1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHS-----ENKLYL 75 (283)
T ss_pred CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheecc-----CCeEEE
Confidence 4556789999999999998742 322 233433 577899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||++ ++|.+++.... ...+++..++.++.|+++||+|||
T Consensus 76 v~e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~~~i~~~L~~lH 116 (283)
T cd07835 76 VFEFLD-LDLKKYMDSSP----LTGLDPPLIKSYLYQLLQGIAYCH 116 (283)
T ss_pred EEeccC-cCHHHHHhhCC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999995 69999987543 246899999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc |
| >cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-09 Score=104.24 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=41.2
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++... ..++|..+..++.|+++|++|||
T Consensus 69 ~~~~~~v~e~~~g~~L~~~l~~~------~~l~~~~~~~~~~ql~~~l~~lH 114 (278)
T cd05606 69 PDKLSFILDLMNGGDLHYHLSQH------GVFSEAEMRFYAAEIILGLEHMH 114 (278)
T ss_pred CCEEEEEEecCCCCcHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999988753 36899999999999999999999
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co |
| >cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-09 Score=102.03 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=58.4
Q ss_pred cccCceecEEEEEeCCC-c-e-------------------------------------eEEEeccccCCCceEEEEEeec
Q 039925 403 IGQGSFGSVYKGILGEK-W-T-------------------------------------AGYSEGTDFKGIDFKAVVFDYM 443 (549)
Q Consensus 403 lG~G~~g~Vy~~~~~~~-~-~-------------------------------------~g~~~~~~~~~~~~~~lv~ey~ 443 (549)
||.|+||.||+|+.... . + .+.+.. +...++|+||+
T Consensus 1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~lv~e~~ 75 (262)
T cd05572 1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKD-----KKYIYMLMEYC 75 (262)
T ss_pred CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEc-----CCccEEEEecC
Confidence 69999999999998632 2 1 233444 56789999999
Q ss_pred CCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 444 QNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 444 ~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|+|.++++... .+++..+..++.|++.|++|||
T Consensus 76 ~~~~L~~~l~~~~------~l~~~~~~~~~~~i~~~l~~lH 110 (262)
T cd05572 76 LGGELWTILRDRG------LFDEYTARFYIACVVLAFEYLH 110 (262)
T ss_pred CCCcHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999998643 4788889999999999999999
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi |
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-09 Score=106.03 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=65.5
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+|...+ +.. .+.+.. ...
T Consensus 1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~ 75 (316)
T cd05574 1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQT-----ETY 75 (316)
T ss_pred CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeec-----CCE
Confidence 367778899999999999998754 222 233333 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... ...+++.....++.|+++||+|||
T Consensus 76 ~~lv~e~~~~~~L~~~~~~~~----~~~l~~~~~~~~~~qi~~~l~~lH 120 (316)
T cd05574 76 LCLVMDYCPGGELFRLLQRQP----GKCLSEEVARFYAAEVLLALEYLH 120 (316)
T ss_pred EEEEEEecCCCCHHHHHHhCC----CCccCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999987542 346889999999999999999999
|
Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin |
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.3e-09 Score=104.53 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=62.8
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+|.... +.. .+++...+..+...
T Consensus 1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~ 80 (295)
T cd07837 1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS 80 (295)
T ss_pred CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence 467888899999999999999753 222 12222211111223
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++ +|.+++..... .....+++.....++.||++||.|||
T Consensus 81 ~~lv~e~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~~qi~~~L~~LH 127 (295)
T cd07837 81 LYLVFEYLDS-DLKKFMDSNGR-GPGRPLPAKTIKSFMYQLLKGVAHCH 127 (295)
T ss_pred EEEEeeccCc-CHHHHHHHhcc-cCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999985 89888865431 11346899999999999999999999
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-10 Score=118.18 Aligned_cols=129 Identities=22% Similarity=0.193 Sum_probs=89.1
Q ss_pred CCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCE
Q 039925 55 NFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQV 134 (549)
Q Consensus 55 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~ 134 (549)
.+..++.+.+..|.+. .+-..+..+++|+.|++.+|+|. .+...+..+++| ++|++++|.|+... .+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L-~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNL-QVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcc-hheecccccccccc--chhhccchhh
Confidence 4566666777777777 33445677788888888888887 444446777888 88888888887543 3455666888
Q ss_pred EEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCc
Q 039925 135 MIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFT 190 (549)
Q Consensus 135 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~ 190 (549)
|++++|.|+. + ..+..+++|+.+++++|.+...-+.....+. ++.+++.+|.+.
T Consensus 145 L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 145 LNLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred heeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 8888888872 2 3455578888888888887743331034555 777888888776
|
|
| >cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-09 Score=105.39 Aligned_cols=79 Identities=22% Similarity=0.194 Sum_probs=64.8
Q ss_pred ccCcCCCccccCceecEEEEEeCCCc-e--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKW-T--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~-~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||++...... . .+++.. ...
T Consensus 1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 75 (290)
T cd05580 1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQD-----DSN 75 (290)
T ss_pred CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEc-----CCe
Confidence 36777889999999999999875422 1 233433 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... .+++..+..++.|++.||.|||
T Consensus 76 ~~~v~e~~~~~~L~~~~~~~~------~l~~~~~~~~~~qil~~l~~lH 118 (290)
T cd05580 76 LYLVMEYVPGGELFSHLRKSG------RFPEPVARFYAAQVVLALEYLH 118 (290)
T ss_pred EEEEEecCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997543 6888999999999999999999
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi |
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-09 Score=110.05 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=67.0
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce----------------------------------------eEEEeccccC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------------~g~~~~~~~~ 431 (549)
...++|...++||+|+||+|+.+.+++... ++.+..
T Consensus 365 ~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT---- 440 (694)
T KOG0694|consen 365 LTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQT---- 440 (694)
T ss_pred ccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeeccccccc----
Confidence 456789999999999999999998865432 222333
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+++.+.||||+.||++..+.+.. .++.++..-+|..|+.||.|||
T Consensus 441 -~~~l~fvmey~~Ggdm~~~~~~~-------~F~e~rarfyaAev~l~L~fLH 485 (694)
T KOG0694|consen 441 -KEHLFFVMEYVAGGDLMHHIHTD-------VFSEPRARFYAAEVVLGLQFLH 485 (694)
T ss_pred -CCeEEEEEEecCCCcEEEEEecc-------cccHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999977777654 4899988889999999999999
|
|
| >cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.4e-09 Score=102.67 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=42.2
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... ...+++..+..++.|++.|+.|||
T Consensus 65 ~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~ql~~~l~~lH 112 (277)
T cd05577 65 KDDLCLVMTLMNGGDLKYHIYNVG----EPGFPEARAIFYAAQIICGLEHLH 112 (277)
T ss_pred CCeEEEEEecCCCCcHHHHHHHcC----cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999997543 246889999999999999999999
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of |
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.2e-09 Score=108.96 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=66.2
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce------------------------------eEEEeccccCCCceEEEEEee
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT------------------------------AGYSEGTDFKGIDFKAVVFDY 442 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------------~g~~~~~~~~~~~~~~lv~ey 442 (549)
....|...+.||+|+||.||+|....... ++++.. .+..++||||
T Consensus 167 ~~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~~~~~~E~~iL~~L~HpnIv~l~~~~~~-----~~~~~lv~e~ 241 (461)
T PHA03211 167 AGLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWYASSVHEARLLRRLSHPAVLALLDVRVV-----GGLTCLVLPK 241 (461)
T ss_pred ccCCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccccCHHHHHHHHHHCCCCCCCcEEEEEEE-----CCEEEEEEEc
Confidence 45578888999999999999999864321 455555 6778999999
Q ss_pred cCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 443 MQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 443 ~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+. |+|.+++.... ..++|.+++.++.|+++||+|||
T Consensus 242 ~~-~~L~~~l~~~~-----~~l~~~~~~~i~~qi~~aL~yLH 277 (461)
T PHA03211 242 YR-SDLYTYLGARL-----RPLGLAQVTAVARQLLSAIDYIH 277 (461)
T ss_pred cC-CCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 85 79999887543 36899999999999999999999
|
|
| >cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.2e-09 Score=102.51 Aligned_cols=79 Identities=19% Similarity=0.313 Sum_probs=60.6
Q ss_pred CcCCCccccCceecEEEEEeCCCc-e-------------------------------------eEEEeccccCCCceEEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEKW-T-------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~~-~-------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
|...+.||+|+||.||+|+..+.. . .+++... ..+..++
T Consensus 1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~---~~~~~~l 77 (287)
T cd07840 1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSK---GKGSIYM 77 (287)
T ss_pred CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecC---CCCcEEE
Confidence 345578999999999999876422 1 3344430 0267899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++ +|.+++.... ..+++..+..++.|+++|++|||
T Consensus 78 v~e~~~~-~l~~~~~~~~-----~~~~~~~~~~i~~~i~~al~~LH 117 (287)
T cd07840 78 VFEYMDH-DLTGLLDSPE-----VKFTESQIKCYMKQLLEGLQYLH 117 (287)
T ss_pred Eeccccc-cHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999985 8988887542 46899999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po |
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-09 Score=71.63 Aligned_cols=38 Identities=55% Similarity=0.941 Sum_probs=30.3
Q ss_pred hhHHHHHHHHhhcC-CCCCCCCCCCCC--CCCCCCCcceeC
Q 039925 2 TDHLALLAIKSLLH-DRRGVTSSWSNS--IDLCQWRGVTCT 39 (549)
Q Consensus 2 ~~~~~l~~~~~~~~-~~~~~~~~w~~~--~~~c~w~gv~c~ 39 (549)
+|++||++||+++. +|.+.+.+|+.+ .+||+|.||.|+
T Consensus 3 ~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 3 QDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred HHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 68999999999998 566899999887 699999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-09 Score=109.85 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=65.6
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~ 432 (549)
...++|...+.||+|+||.||+++... +.. .+++..
T Consensus 40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~----- 114 (370)
T cd05596 40 MKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQD----- 114 (370)
T ss_pred CCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEec-----
Confidence 567789999999999999999998753 222 233444
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+...++||||+++|+|.++++.. .++......++.|+++||+|||
T Consensus 115 ~~~~~lv~Ey~~gg~L~~~l~~~-------~l~~~~~~~~~~qi~~aL~~LH 159 (370)
T cd05596 115 DKYLYMVMEYMPGGDLVNLMSNY-------DIPEKWARFYTAEVVLALDAIH 159 (370)
T ss_pred CCEEEEEEcCCCCCcHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999998753 3667777889999999999999
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7 | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-09 Score=105.68 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=64.6
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~ 433 (549)
...++|...+.||+|+||.||+|.+.+ +.. +|+|.. .
T Consensus 12 ~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-----~ 86 (296)
T cd06618 12 ADLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFIT-----D 86 (296)
T ss_pred CCcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeec-----C
Confidence 345678889999999999999999874 221 355555 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||++ +++.++..... ..+++..+..++.++++||+|||
T Consensus 87 ~~~~~v~e~~~-~~l~~l~~~~~-----~~l~~~~~~~i~~~i~~~l~~lH 131 (296)
T cd06618 87 SDVFICMELMS-TCLDKLLKRIQ-----GPIPEDILGKMTVAIVKALHYLK 131 (296)
T ss_pred CeEEEEeeccC-cCHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999985 46777665432 36899999999999999999999
|
Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it |
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.9e-09 Score=105.10 Aligned_cols=79 Identities=20% Similarity=0.122 Sum_probs=62.4
Q ss_pred cccCcCCCccccCceecEEEEEeC-CCce-----------------------------------eEEEeccccCCCceEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILG-EKWT-----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
...|.....||+|+||.||+|... ++.. .+.+.. .+..+
T Consensus 20 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-----~~~~~ 94 (297)
T cd06659 20 RSLLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLV-----GEELW 94 (297)
T ss_pred hhhHHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheee-----CCeEE
Confidence 344555667999999999999864 2322 233444 56789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++... .+++.....++.|++.|++|||
T Consensus 95 iv~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~qi~~~L~~LH 134 (297)
T cd06659 95 VLMEFLQGGALTDIVSQT-------RLNEEQIATVCESVLQALCYLH 134 (297)
T ss_pred EEEecCCCCCHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987642 4889999999999999999999
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-09 Score=109.74 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=60.2
Q ss_pred cCcCCCccccCceecEEEEEeC-CCce-------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILG-EKWT-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~-~~~~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+|...+.||+|+||.||+|... ++.. .+++...........+
T Consensus 1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 80 (372)
T cd07853 1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY 80 (372)
T ss_pred CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence 5788899999999999999864 3322 2233321001112679
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||++ ++|.+++... ..+++.....++.|+++||+|||
T Consensus 81 lv~e~~~-~~l~~~~~~~------~~l~~~~~~~~~~qi~~aL~~LH 120 (372)
T cd07853 81 VVTELMQ-SDLHKIIVSP------QPLSSDHVKVFLYQILRGLKYLH 120 (372)
T ss_pred EEeeccc-cCHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999997 5788877643 36889999999999999999999
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.3e-09 Score=104.52 Aligned_cols=82 Identities=23% Similarity=0.235 Sum_probs=63.3
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-e--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-T--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~--------------------------------------~g~~~~~~~~~ 432 (549)
.....|...+.||+|+||.||+|+..... . .+++..
T Consensus 12 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----- 86 (308)
T cd06634 12 DPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR----- 86 (308)
T ss_pred CcHHHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEc-----
Confidence 34555777788999999999999874322 1 344444
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+. |++.+++.... ..+++..+..++.+++.|+.|||
T Consensus 87 ~~~~~lv~e~~~-~~l~~~~~~~~-----~~l~~~~~~~~~~~l~~~l~~LH 132 (308)
T cd06634 87 EHTAWLVMEYCL-GSASDLLEVHK-----KPLQEVEIAAVTHGALQGLAYLH 132 (308)
T ss_pred CCeeEEEEEccC-CCHHHHHHHcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999997 68888776433 35788889999999999999999
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin |
| >KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.5e-09 Score=108.90 Aligned_cols=89 Identities=19% Similarity=0.183 Sum_probs=73.6
Q ss_pred cccccCcCCCccccCceecEEEEEeC-CCce-----------------------------------eEEEeccccCCCce
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG-EKWT-----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-----------------------------------~g~~~~~~~~~~~~ 435 (549)
..++-|...++||+|.+|.||+++-. ++.. +|++...+-.+.+.
T Consensus 16 dp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~Dq 95 (953)
T KOG0587|consen 16 DPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQ 95 (953)
T ss_pred CCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCe
Confidence 46677888889999999999999853 3322 56665555556789
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||||.+||..|.++... +..+.|....-|++.+.+|+.|||
T Consensus 96 LWLVMEfC~gGSVTDLVKn~~----g~rl~E~~IaYI~re~lrgl~HLH 140 (953)
T KOG0587|consen 96 LWLVMEFCGGGSVTDLVKNTK----GNRLKEEWIAYILREILRGLAHLH 140 (953)
T ss_pred EEEEeeccCCccHHHHHhhhc----ccchhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998665 567999999999999999999999
|
|
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-09 Score=106.39 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=68.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-e---------------------------------------eEEEeccccC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-T---------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~---------------------------------------~g~~~~~~~~ 431 (549)
..-.||..+++||+|+|.+||+|+-.+.. . +--+.+
T Consensus 70 k~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD---- 145 (604)
T KOG0592|consen 70 KTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQD---- 145 (604)
T ss_pred CChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeec----
Confidence 45568999999999999999999865432 2 122334
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..+|.|+||++||+|.++|++.+ .|+......+|.+|..|++|||
T Consensus 146 -~~sLYFvLe~A~nGdll~~i~K~G------sfde~caR~YAAeIldAleylH 191 (604)
T KOG0592|consen 146 -EESLYFVLEYAPNGDLLDLIKKYG------SFDETCARFYAAEILDALEYLH 191 (604)
T ss_pred -ccceEEEEEecCCCcHHHHHHHhC------cchHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999764 7888888899999999999999
|
|
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-08 Score=100.40 Aligned_cols=81 Identities=16% Similarity=0.275 Sum_probs=63.9
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCce
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~ 435 (549)
..++|...+.||+|+||.||+|.... +.. .+++.. ...
T Consensus 3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~ 77 (303)
T cd07869 3 KADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHT-----KET 77 (303)
T ss_pred ccccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEec-----CCe
Confidence 35788889999999999999998753 221 244444 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||++ |+|.+++.... ..+++.....++.|++.||+|||
T Consensus 78 ~~lv~e~~~-~~l~~~~~~~~-----~~~~~~~~~~~~~qi~~al~~lH 120 (303)
T cd07869 78 LTLVFEYVH-TDLCQYMDKHP-----GGLHPENVKLFLFQLLRGLSYIH 120 (303)
T ss_pred EEEEEECCC-cCHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999996 68888876543 35788888899999999999999
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.4e-09 Score=109.63 Aligned_cols=90 Identities=20% Similarity=0.360 Sum_probs=62.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-e-------------------------------eEEEecccc---CCCceE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-T-------------------------------AGYSEGTDF---KGIDFK 436 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~-------------------------------~g~~~~~~~---~~~~~~ 436 (549)
...++|...+.||+|+||.||+|+..+.. . .+++..... ......
T Consensus 63 ~~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l 142 (440)
T PTZ00036 63 SPNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDPQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFL 142 (440)
T ss_pred CcCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEE
Confidence 35567999999999999999999875322 1 122211100 112356
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++ ++.+++.... .....+++.....++.|+++||+|||
T Consensus 143 ~lvmE~~~~-~l~~~~~~~~--~~~~~l~~~~~~~~~~qi~~gL~yLH 187 (440)
T PTZ00036 143 NVVMEFIPQ-TVHKYMKHYA--RNNHALPLFLVKLYSYQLCRALAYIH 187 (440)
T ss_pred EEEEecCCc-cHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 799999985 7777765321 12346888889999999999999999
|
|
| >cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=100.51 Aligned_cols=82 Identities=20% Similarity=0.326 Sum_probs=63.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~ 434 (549)
.++++|...+.||+|+||.||+|.... +.. .+++.. .+
T Consensus 2 ~~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~-----~~ 76 (291)
T cd07870 2 GAATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHT-----KE 76 (291)
T ss_pred CccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEec-----CC
Confidence 367889999999999999999997642 211 344444 56
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||++ +++.+++.... ..+.+.....++.|++.||+|||
T Consensus 77 ~~~lv~e~~~-~~l~~~~~~~~-----~~~~~~~~~~~~~qi~~~L~~lH 120 (291)
T cd07870 77 TLTFVFEYMH-TDLAQYMIQHP-----GGLHPYNVRLFMFQLLRGLAYIH 120 (291)
T ss_pred eEEEEEeccc-CCHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999996 78877765432 35778888889999999999999
|
Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess |
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-09 Score=102.68 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=68.2
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~ 432 (549)
..-++|...++||+|+||+||.++..+... .-.+.+
T Consensus 22 ~~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt----- 96 (357)
T KOG0598|consen 22 VGPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQT----- 96 (357)
T ss_pred CChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEeccc-----
Confidence 346789999999999999999998764332 122344
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++..++|+||+.||.|...|++++ .++..+..-++..|+.||.|||
T Consensus 97 ~~kLylVld~~~GGeLf~hL~~eg------~F~E~~arfYlaEi~lAL~~LH 142 (357)
T KOG0598|consen 97 EEKLYLVLDYLNGGELFYHLQREG------RFSEDRARFYLAEIVLALGYLH 142 (357)
T ss_pred CCeEEEEEeccCCccHHHHHHhcC------CcchhHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999764 6888877779999999999999
|
|
| >cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.5e-09 Score=102.22 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=63.9
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~ 436 (549)
-++|...+.||+|+||.||+|.... +.. .+++.. .+..
T Consensus 4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~ 78 (291)
T cd07844 4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHT-----KKTL 78 (291)
T ss_pred ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEec-----CCeE
Confidence 3578888899999999999998753 222 234444 5678
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||++ |+|.+++.... ..+++.....++.|+++||.|||
T Consensus 79 ~lv~e~~~-~~L~~~~~~~~-----~~~~~~~~~~~~~ql~~al~~lH 120 (291)
T cd07844 79 TLVFEYLD-TDLKQYMDDCG-----GGLSMHNVRLFLFQLLRGLAYCH 120 (291)
T ss_pred EEEEecCC-CCHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998 49999887543 36788889999999999999999
|
Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the |
| >cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.5e-09 Score=106.60 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=62.3
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC-ce-------------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK-WT-------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~-------------------------------------~g~~~~~~~~~~ 433 (549)
...+.|...+.||+|+||.||+|..... .. .+++........
T Consensus 2 ~~~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~ 81 (337)
T cd07858 2 EVDTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAF 81 (337)
T ss_pred ccccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheeccccccc
Confidence 3556788889999999999999986432 11 111211000011
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+. ++|.+++... ..+++.....++.|++.||.|||
T Consensus 82 ~~~~lv~e~~~-~~L~~~~~~~------~~l~~~~~~~i~~qi~~aL~~LH 125 (337)
T cd07858 82 NDVYIVYELMD-TDLHQIIRSS------QTLSDDHCQYFLYQLLRGLKYIH 125 (337)
T ss_pred CcEEEEEeCCC-CCHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 34799999996 7898888753 35889999999999999999999
|
Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati |
| >KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.9e-09 Score=103.90 Aligned_cols=84 Identities=19% Similarity=0.250 Sum_probs=65.5
Q ss_pred cccccCcCCCccccCceecEEEEEe-CCCce-------------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGIL-GEKWT-------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~-------------------------------------~g~~~~~~~~~~ 433 (549)
.-.+.|...+.||+|.||.||||+. .++.+ .+.-.+ ...
T Consensus 114 r~~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~---~~~ 190 (560)
T KOG0600|consen 114 RRADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTS---KLS 190 (560)
T ss_pred cchHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEe---cCC
Confidence 4556788889999999999999985 44443 232222 114
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..+|||+|||++ +|.-++... .-.|+..+...++.|+.+||+|+|
T Consensus 191 ~siYlVFeYMdh-DL~GLl~~p-----~vkft~~qIKc~mkQLl~Gl~~cH 235 (560)
T KOG0600|consen 191 GSIYLVFEYMDH-DLSGLLSSP-----GVKFTEPQIKCYMKQLLEGLEYCH 235 (560)
T ss_pred ceEEEEEecccc-hhhhhhcCC-----CcccChHHHHHHHHHHHHHHHHHh
Confidence 689999999997 888887753 256899999999999999999999
|
|
| >cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.8e-09 Score=103.32 Aligned_cols=77 Identities=23% Similarity=0.279 Sum_probs=60.3
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCceEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
|...+.||+|+||.||+|+... +.. .+++.. ....+
T Consensus 23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~ 97 (313)
T cd06633 23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLK-----EHTAW 97 (313)
T ss_pred hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEe-----CCEEE
Confidence 5556779999999999998643 221 345555 66789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||++ |++.+++.... ..++|..+..++.|++.|+.|||
T Consensus 98 lv~e~~~-~~l~~~l~~~~-----~~l~~~~~~~~~~qi~~al~~LH 138 (313)
T cd06633 98 LVMEYCL-GSASDLLEVHK-----KPLQEVEIAAITHGALQGLAYLH 138 (313)
T ss_pred EEEecCC-CCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999996 67877776433 46889999999999999999999
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co |
| >cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4 | Back alignment and domain information |
|---|
Probab=98.83 E-value=7e-09 Score=102.12 Aligned_cols=73 Identities=19% Similarity=0.137 Sum_probs=59.1
Q ss_pred CCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCceEEEEEeec
Q 039925 400 SNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDFKAVVFDYM 443 (549)
Q Consensus 400 ~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~~~lv~ey~ 443 (549)
...||+|+||.||+|.... +.. .+++.. .+..++||||+
T Consensus 25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~~lv~e~~ 99 (292)
T cd06657 25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-----GDELWVVMEFL 99 (292)
T ss_pred HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEe-----CCEEEEEEecC
Confidence 3569999999999998743 221 334444 67889999999
Q ss_pred CCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 444 QNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 444 ~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++++|.+++... .+++.....++.|++.|++|||
T Consensus 100 ~~~~L~~~~~~~-------~~~~~~~~~~~~ql~~~l~~lH 133 (292)
T cd06657 100 EGGALTDIVTHT-------RMNEEQIAAVCLAVLKALSVLH 133 (292)
T ss_pred CCCcHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999987542 4788899999999999999999
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo |
| >cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-09 Score=104.80 Aligned_cols=84 Identities=23% Similarity=0.293 Sum_probs=63.9
Q ss_pred ccCcCCCccccCceecEEEEEeCC-CceeE--EEe-------------------------cc-------ccCCCceEEEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWTAG--YSE-------------------------GT-------DFKGIDFKAVV 439 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~~g--~~~-------------------------~~-------~~~~~~~~~lv 439 (549)
++|...+.||+|+||.||+|.... +..+. .+. .. .+...+..++|
T Consensus 1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv 80 (280)
T cd05581 1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV 80 (280)
T ss_pred CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence 367778899999999999999753 22200 000 00 01225678999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.+++.... .+++.....++.|++.||.|||
T Consensus 81 ~e~~~~~~L~~~l~~~~------~l~~~~~~~i~~ql~~~l~~Lh 119 (280)
T cd05581 81 LEYAPNGELLQYIRKYG------SLDEKCTRFYAAEILLALEYLH 119 (280)
T ss_pred EcCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998643 6899999999999999999999
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto |
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-09 Score=105.12 Aligned_cols=77 Identities=17% Similarity=0.278 Sum_probs=58.9
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
|...+.||+|+||.||+|+... +.. .+++ ......++
T Consensus 2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~-----~~~~~~~l 76 (284)
T cd07839 2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVL-----HSDKKLTL 76 (284)
T ss_pred ceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHh-----ccCCceEE
Confidence 5566789999999999999753 322 0111 12456799
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+||++ |+|.+++.... ..+++.....++.||++||.|||
T Consensus 77 v~e~~~-~~l~~~~~~~~-----~~~~~~~~~~~~~qi~~al~~LH 116 (284)
T cd07839 77 VFEYCD-QDLKKYFDSCN-----GDIDPEIVKSFMFQLLKGLAFCH 116 (284)
T ss_pred EEecCC-CCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999997 58888876432 35899999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.7e-09 Score=100.72 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=59.4
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
|...+.||+|++|.||+|.... +.. .+++.. +...++
T Consensus 1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~~ 75 (283)
T cd05118 1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRH-----KGDLYL 75 (283)
T ss_pred CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhcc-----CCCEEE
Confidence 3455679999999999998753 322 122222 567899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+||+++ ++.+++.... ..+++..+..++.++++|+.|||
T Consensus 76 v~e~~~~-~l~~~l~~~~-----~~~~~~~~~~~~~~i~~~l~~LH 115 (283)
T cd05118 76 VFEFMDT-DLYKLIKDRQ-----RGLPESLIKSYLYQLLQGLAFCH 115 (283)
T ss_pred EEeccCC-CHHHHHHhhc-----ccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999975 8888887543 46899999999999999999999
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They |
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7e-09 Score=96.22 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=69.4
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~~ 433 (549)
.-++|...+.||.|+||.|..++.+.... .+.+.+ .
T Consensus 42 ~l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d-----~ 116 (355)
T KOG0616|consen 42 SLQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKD-----N 116 (355)
T ss_pred chhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeecc-----C
Confidence 45688889999999999999998754432 345555 7
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|.|..+|++.+ +++..+..-+|.+|+.|++|||
T Consensus 117 ~~lymvmeyv~GGElFS~Lrk~~------rF~e~~arFYAAeivlAleylH 161 (355)
T KOG0616|consen 117 SNLYMVMEYVPGGELFSYLRKSG------RFSEPHARFYAAEIVLALEYLH 161 (355)
T ss_pred CeEEEEEeccCCccHHHHHHhcC------CCCchhHHHHHHHHHHHHHHHH
Confidence 88999999999999999999754 7999998899999999999999
|
|
| >cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-08 Score=100.47 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=41.9
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++..++|+||+++|++.++++... ...+++.....++.|++.||+|||
T Consensus 71 ~~~~~~v~e~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~qi~~aL~~lH 118 (328)
T cd08226 71 GSWLWVISPFMAYGSANSLLKTYF----PEGMSEALIGNILFGALRGLNYLH 118 (328)
T ss_pred CCceEEEEecccCCCHHHHHHhhc----ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 667899999999999999988643 235888888999999999999999
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig |
| >KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.3e-09 Score=94.32 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=63.4
Q ss_pred cCcCCCccccCceecEEEEEeC-CCce-------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILG-EKWT-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~-~~~~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
.|...+.+|+|.||.||+|+.. .++. ..++.. .+...
T Consensus 3 rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~-----~~~l~ 77 (318)
T KOG0659|consen 3 RYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPH-----KSNLS 77 (318)
T ss_pred hhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccC-----CCceE
Confidence 4667789999999999999863 3332 223333 56788
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+|||+. +|+..+++.. -.++.++...++.++.+|++|||
T Consensus 78 lVfEfm~t-dLe~vIkd~~-----i~l~pa~iK~y~~m~LkGl~y~H 118 (318)
T KOG0659|consen 78 LVFEFMPT-DLEVVIKDKN-----IILSPADIKSYMLMTLKGLAYCH 118 (318)
T ss_pred EEEEeccc-cHHHHhcccc-----cccCHHHHHHHHHHHHHHHHHHH
Confidence 99999997 9999999765 57899999999999999999999
|
|
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-09 Score=107.44 Aligned_cols=88 Identities=14% Similarity=0.201 Sum_probs=66.0
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce------------------------eEEEeccc-------cCCCceEEEEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT------------------------AGYSEGTD-------FKGIDFKAVVF 440 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------~g~~~~~~-------~~~~~~~~lv~ 440 (549)
...+.|.+...||.|+||.||||+-++..+ ++.|.... |.-+...++..
T Consensus 29 nP~d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwili 108 (1187)
T KOG0579|consen 29 NPRDHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILI 108 (1187)
T ss_pred CHHHHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEE
Confidence 344556666779999999999998765443 12222210 12256789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+||..+..+-.-+ ..++..+..-++.+++.||.|||
T Consensus 109 EFC~GGAVDaimlEL~-----r~LtE~QIqvvc~q~ldALn~LH 147 (1187)
T KOG0579|consen 109 EFCGGGAVDAIMLELG-----RVLTEDQIQVVCYQVLDALNWLH 147 (1187)
T ss_pred eecCCchHhHHHHHhc-----cccchHHHHHHHHHHHHHHHHHh
Confidence 9999999998887544 56888888889999999999999
|
|
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.2e-09 Score=105.92 Aligned_cols=81 Identities=14% Similarity=0.214 Sum_probs=63.8
Q ss_pred cCCCccccCceecEEEEEeCCCce-------------------------------------eEEEeccccCCCceEEEEE
Q 039925 398 SSSNMIGQGSFGSVYKGILGEKWT-------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 398 ~~~~~lG~G~~g~Vy~~~~~~~~~-------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
....+||+|+|-+||||......+ +-++..+.........+|+
T Consensus 43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT 122 (632)
T KOG0584|consen 43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT 122 (632)
T ss_pred ehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence 345689999999999999765443 2223322223346688999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|.|..|+|+.|+++.+ ..+.+...++|+||.+||.|||
T Consensus 123 EL~TSGtLr~Y~kk~~------~vn~kaik~W~RQILkGL~yLH 160 (632)
T KOG0584|consen 123 ELFTSGTLREYRKKHR------RVNIKAIKSWCRQILKGLVYLH 160 (632)
T ss_pred ecccCCcHHHHHHHhc------cCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999775 6788888999999999999999
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.4e-09 Score=76.63 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=26.9
Q ss_pred ceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCc
Q 039925 109 TKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNE 165 (549)
Q Consensus 109 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 165 (549)
++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 444444444443333444444444444444444444444444445555555554443
|
... |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.1e-10 Score=105.99 Aligned_cols=193 Identities=19% Similarity=0.225 Sum_probs=115.0
Q ss_pred cCCCCCCEeecccccccccCCcc----cccccCccceeeecccccccc-------------cccccCCCCCCCEEEeecc
Q 039925 78 GRLFRLEYLLLANNHFSGKIPAN----LSHCSNLLTKLFICETHLSGQ-------------LLDFIGNPSAIQVMIFKEN 140 (549)
Q Consensus 78 ~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~~L~Ls~n~l~~~-------------~~~~~~~l~~L~~L~L~~n 140 (549)
..+++|++|+||.|-+....++. +.++..| ++|.|.+|.+... ...-.+.-+.|+++....|
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L-~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDL-EELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCH-HHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 34556666666666655333332 2445566 6666666655421 1112344567888888888
Q ss_pred eeee----eCCccccCCCCCCEEecccCcceec----ccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecc
Q 039925 141 SLEG----KFPNTLSNLRSLFYDNINRNEFSGL----IPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILL 211 (549)
Q Consensus 141 ~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~ 211 (549)
++.. .+...|...+.|+.+.+..|.|... +...+..++ |+.|||.+|.|+......+...++.+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~------- 240 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW------- 240 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc-------
Confidence 7752 2234456667788888888776522 224456666 88888888887755544454334332
Q ss_pred cccccccccCcccccEEEccccccccccChhh----hhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCc
Q 039925 212 LAQKLYWSDVSTTATIIAMGGNQISGTITLGI----KKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNN 287 (549)
Q Consensus 212 ~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~----~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N 287 (549)
++|+.|+++++.+...-...| ... .++|+.|.|.+|.++..-...+..++...+.|..|+|++|
T Consensus 241 -----------~~L~El~l~dcll~~~Ga~a~~~al~~~-~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 241 -----------PHLRELNLGDCLLENEGAIAFVDALKES-APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred -----------chheeecccccccccccHHHHHHHHhcc-CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 257777777777765433322 221 2788888888888763321122344556788888999988
Q ss_pred ccc
Q 039925 288 KLQ 290 (549)
Q Consensus 288 ~l~ 290 (549)
.+.
T Consensus 309 ~l~ 311 (382)
T KOG1909|consen 309 RLG 311 (382)
T ss_pred ccc
Confidence 883
|
|
| >cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.6e-09 Score=104.13 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=62.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~ 433 (549)
..++|...+.||+|+||.||+|.... +.. ++++... ..
T Consensus 5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~---~~ 81 (337)
T cd07852 5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAE---ND 81 (337)
T ss_pred hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccC---CC
Confidence 45678888999999999999998753 221 2333221 13
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||++ ++|.++++.. .++|..+..++.|++.||+|||
T Consensus 82 ~~~~lv~e~~~-~~L~~~~~~~-------~~~~~~~~~i~~qi~~~L~~LH 124 (337)
T cd07852 82 KDIYLVFEYME-TDLHAVIRAN-------ILEDVHKRYIMYQLLKALKYIH 124 (337)
T ss_pred ceEEEEecccc-cCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 35799999997 5998888642 5789999999999999999999
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul |
| >PLN00009 cyclin-dependent kinase A; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-08 Score=100.84 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=61.7
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~ 436 (549)
++|...+.||+|+||.||+|.... +.. .+++.. ....
T Consensus 2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 76 (294)
T PLN00009 2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHS-----EKRL 76 (294)
T ss_pred CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEec-----CCeE
Confidence 467888899999999999998753 321 344444 6788
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||++ +++.+++.... ...+++.....++.|++.||+|||
T Consensus 77 ~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~~qi~~aL~~LH 119 (294)
T PLN00009 77 YLVFEYLD-LDLKKHMDSSP----DFAKNPRLIKTYLYQILRGIAYCH 119 (294)
T ss_pred EEEEeccc-ccHHHHHHhCC----CCCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999996 58888876433 234577778889999999999999
|
|
| >KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-09 Score=108.02 Aligned_cols=81 Identities=23% Similarity=0.238 Sum_probs=60.6
Q ss_pred ccccCcCCCccccCceecEEEEEeC-CCce--------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILG-EKWT--------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--------------------------------------~g~~~~~~~~~~ 433 (549)
...-|.+.+.||+|+||.||.|+.. +..+ .|++.. +
T Consensus 24 PEklf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLr-----e 98 (948)
T KOG0577|consen 24 PEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLR-----E 98 (948)
T ss_pred HHHHHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeec-----c
Confidence 3445777788999999999999853 2222 344443 5
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...+||||||-| |-.|.+.-++ +++..-....|+.|+..||+|||
T Consensus 99 ~TaWLVMEYClG-SAsDlleVhk-----KplqEvEIAAi~~gaL~gLaYLH 143 (948)
T KOG0577|consen 99 HTAWLVMEYCLG-SASDLLEVHK-----KPLQEVEIAAITHGALQGLAYLH 143 (948)
T ss_pred chHHHHHHHHhc-cHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHH
Confidence 567899999964 6666665443 46778888899999999999999
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.7e-09 Score=76.50 Aligned_cols=59 Identities=25% Similarity=0.325 Sum_probs=28.5
Q ss_pred CCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecce
Q 039925 82 RLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENS 141 (549)
Q Consensus 82 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 141 (549)
+|++|++++|+++...+..|..+++| ++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L-~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNL-ETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTE-SEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCC-CEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444555544442222344444554 555555555544444455555555555555554
|
... |
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-08 Score=103.69 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=64.8
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc-e-----------------------------eEEEeccccCCCceEEEEEee
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW-T-----------------------------AGYSEGTDFKGIDFKAVVFDY 442 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~-----------------------------~g~~~~~~~~~~~~~~lv~ey 442 (549)
..+.|...+.||+|+||.||++...... . .+++.. ....++|+||
T Consensus 90 ~~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-----~~~~~lv~e~ 164 (391)
T PHA03212 90 EKAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQRGGTATEAHILRAINHPSIIQLKGTFTY-----NKFTCLILPR 164 (391)
T ss_pred ccCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhhhhhHHHHHHHHhCCCCCCCCEeEEEEE-----CCeeEEEEec
Confidence 4567999999999999999999864322 1 455555 6778999999
Q ss_pred cCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 443 MQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 443 ~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+. |+|.+++.... .+++...+.++.|+++||+|||
T Consensus 165 ~~-~~L~~~l~~~~------~l~~~~~~~i~~qi~~aL~ylH 199 (391)
T PHA03212 165 YK-TDLYCYLAAKR------NIAICDILAIERSVLRAIQYLH 199 (391)
T ss_pred CC-CCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 85 78988887543 5889999999999999999999
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-09 Score=113.31 Aligned_cols=198 Identities=27% Similarity=0.291 Sum_probs=136.9
Q ss_pred cCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCC
Q 039925 78 GRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLF 157 (549)
Q Consensus 78 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 157 (549)
..+..++.+++..|.+. .+-..+..+++| +.|++.+|+|... ...+..+++|++|++++|.|+..- .+..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l-~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSL-EALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccce-eeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchh
Confidence 45677888889999998 444557888999 9999999999844 333778999999999999998432 466778899
Q ss_pred EEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccc
Q 039925 158 YDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQIS 236 (549)
Q Consensus 158 ~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~ 236 (549)
.|++.+|.+... ..+..+. |+.+++++|.+...-+.... .+ .+++.+++.+|.+.
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~-~~---------------------~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELS-EL---------------------ISLEELDLGGNSIR 199 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhh-hc---------------------cchHHHhccCCchh
Confidence 999999998732 3445577 99999999998833221011 22 25666777777765
Q ss_pred cccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccc--cCeeeccCccccccCCccccCCCCCCEEEccCCccc
Q 039925 237 GTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTL--LTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 237 ~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 314 (549)
.. ..+..+ ..+..+++..|.++..- .+..+.. |+.+++++|.+. ..+..+..+..+..|++.+|++.
T Consensus 200 ~i--~~~~~~--~~l~~~~l~~n~i~~~~------~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 200 EI--EGLDLL--KKLVLLSLLDNKISKLE------GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cc--cchHHH--HHHHHhhcccccceecc------CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 32 223333 45555577777776221 2223333 778888888877 44456667777788888877776
Q ss_pred c
Q 039925 315 A 315 (549)
Q Consensus 315 ~ 315 (549)
.
T Consensus 269 ~ 269 (414)
T KOG0531|consen 269 N 269 (414)
T ss_pred c
Confidence 4
|
|
| >cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-08 Score=100.82 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=60.8
Q ss_pred cCcCCCccccCceecEEEEEeC----CCce----------------------------------------eEEEeccccC
Q 039925 396 EFSSSNMIGQGSFGSVYKGILG----EKWT----------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~----~~~~----------------------------------------~g~~~~~~~~ 431 (549)
+|...+.||+|+||.||++... ++.. .+.+..
T Consensus 1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~---- 76 (290)
T cd05613 1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT---- 76 (290)
T ss_pred CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeec----
Confidence 4667788999999999998863 2221 112222
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... .+++.....++.|+++||.|||
T Consensus 77 -~~~~~lv~e~~~~~~L~~~l~~~~------~l~~~~~~~~~~qi~~al~~lH 122 (290)
T cd05613 77 -DTKLHLILDYINGGELFTHLSQRE------RFKEQEVQIYSGEIVLALEHLH 122 (290)
T ss_pred -CCeEEEEEecCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999997543 5778888889999999999999
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-08 Score=99.46 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=60.8
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
|.....||+|+||.||+|+... +.. .+++.. .+..++
T Consensus 1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~~~~ 75 (282)
T cd07829 1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHT-----ERKLYL 75 (282)
T ss_pred CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhc-----CCceEE
Confidence 4456789999999999999764 222 122322 467899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||++ ++|.+++.... ..+++..+..++.++++|++|||
T Consensus 76 v~e~~~-~~l~~~i~~~~-----~~~~~~~~~~~~~~i~~~l~~LH 115 (282)
T cd07829 76 VFEYCD-MDLKKYLDKRP-----GPLSPNLIKSIMYQLLRGLAYCH 115 (282)
T ss_pred EecCcC-cCHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 999998 59999998642 35899999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the |
| >cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-08 Score=100.12 Aligned_cols=86 Identities=16% Similarity=0.241 Sum_probs=62.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEecccc---C
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDF---K 431 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~---~ 431 (549)
.-++|...+.||+|+||.||+|...+ +.. .++|..... .
T Consensus 10 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 89 (310)
T cd07865 10 EVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNR 89 (310)
T ss_pred hhhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccC
Confidence 44568888999999999999998753 221 233333110 0
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....++||||+++ ++.+++.... ..+++.....++.|++.||+|||
T Consensus 90 ~~~~~~lv~e~~~~-~l~~~l~~~~-----~~~~~~~~~~i~~qi~~al~~lH 136 (310)
T cd07865 90 YKGSFYLVFEFCEH-DLAGLLSNKN-----VKFTLSEIKKVMKMLLNGLYYIH 136 (310)
T ss_pred CCceEEEEEcCCCc-CHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 12345999999974 8888876532 35889999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl |
| >cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-08 Score=103.24 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=61.8
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCce
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~ 435 (549)
.+++|...+.||+|+||.||+|+... +.. .+++....+.....
T Consensus 3 ~~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 82 (336)
T cd07849 3 VGPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFND 82 (336)
T ss_pred cccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccce
Confidence 45789999999999999999998643 221 12222211112345
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++|+||+++ ++.+++... .+++.....++.|+++||+|||
T Consensus 83 ~~lv~e~~~~-~l~~~~~~~-------~l~~~~~~~i~~ql~~aL~~LH 123 (336)
T cd07849 83 VYIVQELMET-DLYKLIKTQ-------HLSNDHIQYFLYQILRGLKYIH 123 (336)
T ss_pred EEEEehhccc-CHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999974 787777543 4889999999999999999999
|
Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase |
| >cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-08 Score=98.28 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=41.4
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++++|.+++.... .+++.....++.|+++|+.|||
T Consensus 65 ~~~~~~v~e~~~~~~L~~~l~~~~------~l~~~~~~~~~~qi~~~l~~lh 110 (250)
T cd05123 65 EEKLYLVLEYAPGGELFSHLSKEG------RFSEERARFYAAEIVLALEYLH 110 (250)
T ss_pred CCeeEEEEecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999997543 5889999999999999999999
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the |
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.8e-09 Score=99.46 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=70.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~~ 433 (549)
..++|...+.||+|.-|+||.+++.+... ++.+.. .
T Consensus 75 ~l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet-----~ 149 (459)
T KOG0610|consen 75 GLRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFET-----D 149 (459)
T ss_pred CHHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeec-----c
Confidence 44567778889999999999999987533 455665 7
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+.++|||||+||+|+...+.+. ...++.....-+|..|.-||+|||
T Consensus 150 ~~~cl~meyCpGGdL~~LrqkQp----~~~fse~~aRFYaAEvl~ALEYLH 196 (459)
T KOG0610|consen 150 KYSCLVMEYCPGGDLHSLRQKQP----GKRFSESAARFYAAEVLLALEYLH 196 (459)
T ss_pred ceeEEEEecCCCccHHHHHhhCC----CCccchhhHHHHHHHHHHHHHHHH
Confidence 89999999999999999988765 567888888889999999999999
|
|
| >KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-09 Score=101.83 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=64.3
Q ss_pred cCcCCCccccCceecEEEEEe-CCCce-----------------------------------eEEEeccccCCCceEEEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGIL-GEKWT-----------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~-~~~~~-----------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
.|...+.||+|.||.|-+|.- ..|.+ +..+. .+.+.+.+.+|
T Consensus 54 RyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyE--VFENkdKIviv 131 (668)
T KOG0611|consen 54 RYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYE--VFENKDKIVIV 131 (668)
T ss_pred HHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhh--hhcCCceEEEE
Confidence 466777899999999999985 33332 11111 13347889999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||..+|.|++|+...+ .++.+...++.+||..|+.|+|
T Consensus 132 MEYaS~GeLYDYiSer~------~LsErEaRhfFRQIvSAVhYCH 170 (668)
T KOG0611|consen 132 MEYASGGELYDYISERG------SLSEREARHFFRQIVSAVHYCH 170 (668)
T ss_pred EEecCCccHHHHHHHhc------cccHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998754 6899999999999999999999
|
|
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-08 Score=99.99 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=58.2
Q ss_pred ccCcCCCccccCceecEEEEEeCCCc-e-------------------------------------eEEEeccccCCCceE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKW-T-------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~-~-------------------------------------~g~~~~~~~~~~~~~ 436 (549)
++|...+.||+|+||.||++...... . +|++.. +...
T Consensus 4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~-----~~~~ 78 (288)
T cd06616 4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFR-----EGDC 78 (288)
T ss_pred HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEec-----CCcE
Confidence 46777788999999999999875422 1 343433 5667
Q ss_pred EEEEeecCCCCcccc---cccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDW---PYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~---l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+++|||++. ++.++ +.... ...+++.....++.+++.||+|||
T Consensus 79 ~~~~e~~~~-~l~~l~~~~~~~~----~~~l~~~~~~~i~~~i~~~l~~lh 124 (288)
T cd06616 79 WICMELMDI-SLDKFYKYVYEVL----KSVIPEEILGKIAVATVKALNYLK 124 (288)
T ss_pred EEEEecccC-CHHHHHHHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHh
Confidence 899999874 44443 32211 246889999999999999999998
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3e-08 Score=104.45 Aligned_cols=82 Identities=18% Similarity=0.343 Sum_probs=63.3
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce-----------------------------------------eEEEecccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------------AGYSEGTDF 430 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------------~g~~~~~~~ 430 (549)
..+++|...+.||+|+||.||+|....... ..++..
T Consensus 126 ~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~--- 202 (467)
T PTZ00284 126 VSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQN--- 202 (467)
T ss_pred cCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEc---
Confidence 356789999999999999999998743221 111211
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....++||||+ +|+|.+++.... .+++.....|+.||+.||+|||
T Consensus 203 -~~~~~~iv~~~~-g~~l~~~l~~~~------~l~~~~~~~i~~qi~~aL~yLH 248 (467)
T PTZ00284 203 -ETGHMCIVMPKY-GPCLLDWIMKHG------PFSHRHLAQIIFQTGVALDYFH 248 (467)
T ss_pred -CCceEEEEEecc-CCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 135678999987 778999887543 6899999999999999999999
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.4e-09 Score=113.97 Aligned_cols=125 Identities=22% Similarity=0.329 Sum_probs=62.2
Q ss_pred CCCCEEEccCCcceecCCccccCCCCCCEeeccccc--ccccCCcc-cccccCccceeeecccccccccccccCCCCCCC
Q 039925 57 GYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNH--FSGKIPAN-LSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQ 133 (549)
Q Consensus 57 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~--l~~~~p~~-l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~ 133 (549)
...+.+.+-+|.+. .++... .++.|++|-+..|. +. .++.. |..++.| +.|||++|.-.+.+|..++++-+|+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~L-rVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLL-RVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcce-EEEECCCCCccCcCChHHhhhhhhh
Confidence 34455555555444 333322 22345555555554 33 23332 3345555 5555555554445555555555555
Q ss_pred EEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCC
Q 039925 134 VMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPE 186 (549)
Q Consensus 134 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~ 186 (549)
+|+++++.+. .+|..+.++++|.+|++..+.....+|.....+. |++|.+..
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 5555555555 5555555555555555555544333444444454 55555443
|
|
| >cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 | Back alignment and domain information |
|---|
Probab=98.72 E-value=4e-08 Score=97.59 Aligned_cols=83 Identities=22% Similarity=0.330 Sum_probs=63.1
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~ 434 (549)
..++|...+.||+|+||.||+|.... +.. .+++.. ...+
T Consensus 5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~~ 81 (309)
T cd07845 5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVG---KHLD 81 (309)
T ss_pred cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEec---CCCC
Confidence 45678899999999999999998753 222 122221 1124
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||++ ++|.+++.... ..+++..+..++.|+++|++|||
T Consensus 82 ~~~lv~e~~~-~~l~~~l~~~~-----~~l~~~~~~~~~~qi~~~l~~lH 125 (309)
T cd07845 82 SIFLVMEYCE-QDLASLLDNMP-----TPFSESQVKCLMLQLLRGLQYLH 125 (309)
T ss_pred eEEEEEecCC-CCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 5799999997 48888887532 46899999999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing |
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.6e-08 Score=102.44 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=62.9
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc----e-----------------------------eEEEeccccCCCceEEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW----T-----------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~----~-----------------------------~g~~~~~~~~~~~~~~lv 439 (549)
....|...+.||+|+||.||++...+.. + ++++.. ....++|
T Consensus 90 ~~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-----~~~~~lv 164 (392)
T PHA03207 90 VRMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGKTPGREIDILKTISHRAIINLIHAYRW-----KSTVCMV 164 (392)
T ss_pred ccCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccccccHHHHHHHHHhcCCCCccceeeeEee-----CCEEEEE
Confidence 3456888899999999999999764321 1 233433 5678999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+. ++|.+++... ..++|..++.++.|+++||+|||
T Consensus 165 ~e~~~-~~l~~~l~~~------~~l~~~~~~~i~~ql~~aL~~LH 202 (392)
T PHA03207 165 MPKYK-CDLFTYVDRS------GPLPLEQAITIQRRLLEALAYLH 202 (392)
T ss_pred ehhcC-CCHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99986 6888888432 36899999999999999999999
|
|
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-08 Score=99.50 Aligned_cols=31 Identities=6% Similarity=-0.058 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 039925 507 DCLVSVLTIGILCSVESPSERMEKPYIVSKL 537 (549)
Q Consensus 507 ~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L 537 (549)
.++.++.+++..||..+|++||++.++.+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~ 293 (294)
T PHA02882 263 NANKFIYDFIECVTKLSYEEKPDYDALIKIF 293 (294)
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence 3456688999999999999999999998876
|
|
| >cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-08 Score=103.06 Aligned_cols=86 Identities=13% Similarity=0.138 Sum_probs=63.1
Q ss_pred ccccccCcCCCccccCceecEEEEEeCCCc-e-------------------------------------eEEEecccc-C
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGEKW-T-------------------------------------AGYSEGTDF-K 431 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~-------------------------------------~g~~~~~~~-~ 431 (549)
|...++|...+.||+|+||.||+|+...+. . .+++...+. .
T Consensus 11 ~~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 90 (343)
T cd07851 11 WEVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLE 90 (343)
T ss_pred ecccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccc
Confidence 466788999999999999999999985432 1 011111000 0
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....++|+||+ +++|.+++... .+++.....++.|+++|++|||
T Consensus 91 ~~~~~~lv~e~~-~~~L~~~~~~~-------~l~~~~~~~~~~ql~~aL~~LH 135 (343)
T cd07851 91 DFQDVYLVTHLM-GADLNNIVKCQ-------KLSDDHIQFLVYQILRGLKYIH 135 (343)
T ss_pred ccccEEEEEecC-CCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 012378999998 56999988742 4899999999999999999999
|
Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK |
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3e-08 Score=99.25 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=68.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~ 432 (549)
...++|....+||+|+||.||.|+.++ |.+ +..+.+
T Consensus 138 ~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD----- 212 (550)
T KOG0605|consen 138 LSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQD----- 212 (550)
T ss_pred CCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecC-----
Confidence 567899999999999999999999754 444 233444
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+.+||||||.|||++..+|.... .|+.....-++.+.+-|++-+|
T Consensus 213 ~~~LYLiMEylPGGD~mTLL~~~~------~L~e~~arfYiaE~vlAI~~iH 258 (550)
T KOG0605|consen 213 KEYLYLIMEYLPGGDMMTLLMRKD------TLTEDWARFYIAETVLAIESIH 258 (550)
T ss_pred CCeeEEEEEecCCccHHHHHHhcC------cCchHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999998765 6777777778889999999999
|
|
| >cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.2e-08 Score=96.41 Aligned_cols=48 Identities=25% Similarity=0.167 Sum_probs=41.6
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..+++|||+++|+|.++++... ...+++.....++.|+++||+|||
T Consensus 71 ~~~~~~~~e~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~LH 118 (314)
T cd08216 71 DSELYVVSPLMAYGSCEDLLKTHF----PEGLPELAIAFILKDVLNALDYIH 118 (314)
T ss_pred CCeEEEEEeccCCCCHHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999998643 235788888899999999999999
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc |
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.6e-08 Score=101.33 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=65.4
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+|.... +.. ++.+.. ...
T Consensus 1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~-----~~~ 75 (363)
T cd05628 1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQD-----KLN 75 (363)
T ss_pred CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEec-----CCe
Confidence 478888999999999999998653 221 233444 667
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 76 ~~lv~E~~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~lH 118 (363)
T cd05628 76 LYLIMEFLPGGDMMTLLMKKD------TLTEEETQFYIAETVLAIDSIH 118 (363)
T ss_pred EEEEEcCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997543 5889999999999999999999
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.1e-08 Score=99.79 Aligned_cols=83 Identities=16% Similarity=0.104 Sum_probs=58.1
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccc-cCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTD-FKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~-~~~~ 433 (549)
..++|...+.||+|+||.||++.... +.. ++++.... ....
T Consensus 19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 98 (359)
T cd07876 19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF 98 (359)
T ss_pred hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence 45678888999999999999998643 221 22222100 0011
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++ ++.+.++. .+++.....++.|+++||+|||
T Consensus 99 ~~~~lv~e~~~~-~l~~~~~~--------~~~~~~~~~~~~qi~~~L~~LH 140 (359)
T cd07876 99 QDVYLVMELMDA-NLCQVIHM--------ELDHERMSYLLYQMLCGIKHLH 140 (359)
T ss_pred ceeEEEEeCCCc-CHHHHHhc--------cCCHHHHHHHHHHHHHHHHHHH
Confidence 346899999975 56665542 3678888889999999999999
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-08 Score=102.60 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=66.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~ 432 (549)
...++|...+.||+|+||.||++....... ++++..
T Consensus 40 ~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~----- 114 (371)
T cd05622 40 MKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD----- 114 (371)
T ss_pred cchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc-----
Confidence 466899999999999999999998754321 233444
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.++++.. .++......++.|++.||+|||
T Consensus 115 ~~~~~lv~Ey~~gg~L~~~~~~~-------~~~~~~~~~~~~qi~~aL~~LH 159 (371)
T cd05622 115 DRYLYMVMEYMPGGDLVNLMSNY-------DVPEKWARFYTAEVVLALDAIH 159 (371)
T ss_pred CCEEEEEEcCCCCCcHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999998753 3677778889999999999999
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-08 Score=101.54 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=63.0
Q ss_pred ccccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccc-cC
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTD-FK 431 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~-~~ 431 (549)
|...+.|...+.||+|+||.||+|.... +.. .+++.... ..
T Consensus 11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 90 (343)
T cd07880 11 WEVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD 90 (343)
T ss_pred hccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc
Confidence 5677889999999999999999998642 221 12221100 00
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....++||||+ +++|.+++... .+++.....++.|+++||+|||
T Consensus 91 ~~~~~~lv~e~~-~~~l~~~~~~~-------~l~~~~~~~i~~qi~~al~~LH 135 (343)
T cd07880 91 RFHDFYLVMPFM-GTDLGKLMKHE-------KLSEDRIQFLVYQMLKGLKYIH 135 (343)
T ss_pred ccceEEEEEecC-CCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 012458999998 77998887643 4889999999999999999999
|
Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12 |
| >cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-08 Score=100.67 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=62.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~ 434 (549)
..++|...+.||+|+||.||+|.... +.. .+++.. ......
T Consensus 3 ~~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~~ 81 (334)
T cd07855 3 VGSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRP-PGADFK 81 (334)
T ss_pred hhhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccc-cCCCCc
Confidence 34788888999999999999998643 222 011110 001134
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||++ |+|.+++.... .+++.....++.|+++||+|||
T Consensus 82 ~~~lv~e~~~-~~l~~~~~~~~------~~~~~~~~~i~~qi~~aL~~LH 124 (334)
T cd07855 82 DVYVVMDLME-SDLHHIIHSDQ------PLTEEHIRYFLYQLLRGLKYIH 124 (334)
T ss_pred eEEEEEehhh-hhHHHHhccCC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 6789999996 68999987543 5899999999999999999999
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the |
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.8e-08 Score=96.74 Aligned_cols=81 Identities=21% Similarity=0.233 Sum_probs=56.9
Q ss_pred CCccccCceecEEEEEeCCCce------------------------------------eEEEeccccCCCceEEEEEeec
Q 039925 400 SNMIGQGSFGSVYKGILGEKWT------------------------------------AGYSEGTDFKGIDFKAVVFDYM 443 (549)
Q Consensus 400 ~~~lG~G~~g~Vy~~~~~~~~~------------------------------------~g~~~~~~~~~~~~~~lv~ey~ 443 (549)
+..||+|+||.||+|+..++.. .+++.. ......++||||+
T Consensus 6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~---~~~~~~~lv~e~~ 82 (317)
T cd07867 6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFLS---HSDRKVWLLFDYA 82 (317)
T ss_pred ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHhCCCCCeeeEEEEEec---cCCCeEEEEEeee
Confidence 4579999999999999754321 233322 1145678999998
Q ss_pred CCCCcccccccCC---CCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 444 QNRSLEDWPYQSN---NKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 444 ~~GsL~~~l~~~~---~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++ +|.+++.... .......+++.....++.|+++||.|||
T Consensus 83 ~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH 125 (317)
T cd07867 83 EH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLH 125 (317)
T ss_pred CC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 75 7777765321 0011235788888999999999999999
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-08 Score=102.71 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=65.6
Q ss_pred ccCcCCCccccCceecEEEEEeC-CCce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILG-EKWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
+-|..++.||+|+.|.|-.|+.. +|+. +.+. .....
T Consensus 12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVw-----e~~~~ 86 (786)
T KOG0588|consen 12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVW-----ENKQH 86 (786)
T ss_pred cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeee-----ccCce
Confidence 45778889999999999998853 3332 2223 33788
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|+|.||+++|.|.+++..++ ++..+...++..||..|+.|+|
T Consensus 87 lylvlEyv~gGELFdylv~kG------~l~e~eaa~ff~QIi~gv~yCH 129 (786)
T KOG0588|consen 87 LYLVLEYVPGGELFDYLVRKG------PLPEREAAHFFRQILDGVSYCH 129 (786)
T ss_pred EEEEEEecCCchhHHHHHhhC------CCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999765 7889999999999999999999
|
|
| >cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-08 Score=99.32 Aligned_cols=80 Identities=19% Similarity=0.139 Sum_probs=65.6
Q ss_pred ccCcCCCccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+++..+... .+++.. .+.
T Consensus 1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~ 75 (332)
T cd05623 1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQD-----ENN 75 (332)
T ss_pred CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEec-----CCE
Confidence 467788899999999999999864332 233444 677
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... ..+++.....++.|++.||+|||
T Consensus 76 ~~lv~ey~~~g~L~~~l~~~~-----~~l~~~~~~~~~~qi~~al~~lH 119 (332)
T cd05623 76 LYLVMDYYVGGDLLTLLSKFE-----DRLPEDMARFYLAEMVIAIDSVH 119 (332)
T ss_pred EEEEEeccCCCcHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997533 35888888899999999999999
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw |
| >cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-08 Score=99.32 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=65.1
Q ss_pred ccCcCCCccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+++...... .+++.. .+.
T Consensus 1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~-----~~~ 75 (331)
T cd05624 1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQD-----ENY 75 (331)
T ss_pred CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----CCE
Confidence 467888899999999999998754321 233334 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... ..+++.....++.|++.||+|||
T Consensus 76 ~~lv~Ey~~gg~L~~~l~~~~-----~~l~~~~~~~~~~qi~~~L~~lH 119 (331)
T cd05624 76 LYLVMDYYVGGDLLTLLSKFE-----DRLPEDMARFYIAEMVLAIHSIH 119 (331)
T ss_pred EEEEEeCCCCCcHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998632 35788888899999999999999
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. |
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.7e-08 Score=99.17 Aligned_cols=83 Identities=16% Similarity=0.089 Sum_probs=59.0
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc--e------------------------------------eEEEeccc-cCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW--T------------------------------------AGYSEGTD-FKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~--~------------------------------------~g~~~~~~-~~~~ 433 (549)
..++|...+.||+|+||.||++...... + ++++.... ....
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 94 (355)
T cd07874 15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF 94 (355)
T ss_pred hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence 4568888899999999999999754221 1 23332210 0112
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++ ++.+++.. .+++.....++.|+++||+|||
T Consensus 95 ~~~~lv~e~~~~-~l~~~~~~--------~l~~~~~~~~~~qi~~aL~~LH 136 (355)
T cd07874 95 QDVYLVMELMDA-NLCQVIQM--------ELDHERMSYLLYQMLCGIKHLH 136 (355)
T ss_pred ceeEEEhhhhcc-cHHHHHhh--------cCCHHHHHHHHHHHHHHHHHHH
Confidence 357899999975 56666542 3778888899999999999999
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.7e-08 Score=94.05 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=62.7
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce----------------------------------------eEEEeccccCCC
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT----------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~----------------------------------------~g~~~~~~~~~~ 433 (549)
.+|...+.||+|+||.||+|.... +.. .+++... ..
T Consensus 2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~---~~ 78 (264)
T cd06653 2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDP---EE 78 (264)
T ss_pred CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcC---CC
Confidence 478889999999999999998643 211 2322220 13
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++|+||+++|+|.+++.... .+++....+++.+++.|+.|||
T Consensus 79 ~~~~~v~e~~~~~~L~~~~~~~~------~l~~~~~~~~~~~i~~al~~LH 123 (264)
T cd06653 79 KKLSIFVEYMPGGSIKDQLKAYG------ALTENVTRRYTRQILQGVSYLH 123 (264)
T ss_pred CEEEEEEEeCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999987543 4788888999999999999999
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho |
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.1e-08 Score=100.62 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=64.3
Q ss_pred cCcCCCccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCCCceE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~~~~~ 436 (549)
.|...+.||+|+||.||+|+...... ++++.. .+..
T Consensus 2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~-----~~~~ 76 (381)
T cd05626 2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQD-----KDNL 76 (381)
T ss_pred CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEec-----CCEE
Confidence 57778899999999999998744321 345554 6789
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 77 ~lv~E~~~gg~L~~~l~~~~------~~~e~~~~~~~~qi~~aL~~LH 118 (381)
T cd05626 77 YFVMDYIPGGDMMSLLIRME------VFPEVLARFYIAELTLAIESVH 118 (381)
T ss_pred EEEEecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997543 5788888889999999999999
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.4e-08 Score=100.57 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=65.8
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+|+... +.. ++++.. ...
T Consensus 1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-----~~~ 75 (364)
T cd05599 1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQD-----ENY 75 (364)
T ss_pred CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEc-----CCe
Confidence 468888999999999999998753 222 344444 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 76 ~~lv~E~~~~g~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~lH 118 (364)
T cd05599 76 LYLIMEYLPGGDMMTLLMKKD------TFTEEETRFYIAETILAIDSIH 118 (364)
T ss_pred EEEEECCCCCcHHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997543 5889999999999999999999
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.9e-08 Score=97.78 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=64.9
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC-ce-----------------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK-WT-----------------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~-----------------------------------------~g~~~~~~ 429 (549)
...+.|...+.||+|+||.||.|..... .. +.+...
T Consensus 14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t-- 91 (370)
T KOG0583|consen 14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFAT-- 91 (370)
T ss_pred cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEec--
Confidence 3456788999999999999999975321 11 112222
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++..++ ++......++..|++.|++|+|
T Consensus 92 ---~~~~~ivmEy~~gGdL~~~i~~~g------~l~E~~ar~~F~Qlisav~y~H 137 (370)
T KOG0583|consen 92 ---PTKIYIVMEYCSGGDLFDYIVNKG------RLKEDEARKYFRQLISAVAYCH 137 (370)
T ss_pred ---CCeEEEEEEecCCccHHHHHHHcC------CCChHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999743 6778888899999999999999
|
|
| >PTZ00024 cyclin-dependent protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.2e-08 Score=96.95 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=38.8
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||++ |+|.+++.... .+++.....++.|++.||+|||
T Consensus 92 ~~~~~lv~e~~~-~~l~~~l~~~~------~~~~~~~~~~~~ql~~aL~~LH 136 (335)
T PTZ00024 92 GDFINLVMDIMA-SDLKKVVDRKI------RLTESQVKCILLQILNGLNVLH 136 (335)
T ss_pred CCcEEEEEeccc-cCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999997 69999987543 5788889999999999999999
|
|
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.5e-08 Score=99.58 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=62.2
Q ss_pred ccccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccc-cC
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTD-FK 431 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~-~~ 431 (549)
|...+.|...+.||+|+||.||+|.... +.. ++++.... ..
T Consensus 11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 90 (343)
T cd07878 11 WEVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIE 90 (343)
T ss_pred hhhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccc
Confidence 4566789999999999999999998643 221 11111100 00
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....++++||+ +++|.++++.. .+++.....++.|+++||+|||
T Consensus 91 ~~~~~~~~~~~~-~~~l~~~~~~~-------~l~~~~~~~i~~qi~~aL~~LH 135 (343)
T cd07878 91 NFNEVYLVTNLM-GADLNNIVKCQ-------KLSDEHVQFLIYQLLRGLKYIH 135 (343)
T ss_pred ccCcEEEEeecC-CCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 123468999987 78998887643 4889999999999999999999
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=95.23 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=62.5
Q ss_pred ccccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCC
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~ 432 (549)
+..+++|...+.||+|+||.||+|.... +.. .+++.. .
T Consensus 6 ~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~----~ 81 (328)
T cd07856 6 FEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFIS----P 81 (328)
T ss_pred eccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEec----C
Confidence 3678889999999999999999997542 211 233322 1
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++|+||+ +++|.++++.. ++++.....++.|+++||.|||
T Consensus 82 ~~~~~lv~e~~-~~~L~~~~~~~-------~~~~~~~~~~~~ql~~aL~~LH 125 (328)
T cd07856 82 LEDIYFVTELL-GTDLHRLLTSR-------PLEKQFIQYFLYQILRGLKYVH 125 (328)
T ss_pred CCcEEEEeehh-ccCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 34678999998 56898887643 4777778889999999999999
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U |
| >cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.8e-08 Score=93.00 Aligned_cols=46 Identities=11% Similarity=-0.031 Sum_probs=41.4
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 57 ~~~~~lv~e~~~~~~L~~~l~~~~------~l~~~~~~~~~~ql~~~l~~lH 102 (237)
T cd05576 57 EDSVFLVLQHAEGGKLWSHISKFL------NIPEECVKRWAAEMVVALDALH 102 (237)
T ss_pred CCeEEEEEecCCCCCHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999987543 4889999999999999999999
|
Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha |
| >PLN03225 Serine/threonine-protein kinase SNT7; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.4e-08 Score=104.66 Aligned_cols=93 Identities=23% Similarity=0.225 Sum_probs=62.3
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC-----cee--------------------------------EEEeccccCCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK-----WTA--------------------------------GYSEGTDFKGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~-----~~~--------------------------------g~~~~~~~~~~~ 434 (549)
...++|...+.||+|+||.||+|++.+. ..+ ++..........
T Consensus 129 ~~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (566)
T PLN03225 129 FKKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNERVRRACPNSCADFVYGFLEPVSSKKED 208 (566)
T ss_pred CccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHHHHHhhchhhHHHHHHhhhcccccccCC
Confidence 4678899999999999999999998654 110 000000002256
Q ss_pred eEEEEEeecCCCCcccccccCCCCC--------------CCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKL--------------KPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~--------------~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|+++++...... ............++.|+++||+|||
T Consensus 209 ~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH 272 (566)
T PLN03225 209 EYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLH 272 (566)
T ss_pred ceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999987542000 0001112234578999999999999
|
|
| >cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.2e-08 Score=99.13 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=64.5
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||++.... +.. ++++.. ...
T Consensus 1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~-----~~~ 75 (377)
T cd05629 1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQD-----AQY 75 (377)
T ss_pred CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEc-----CCe
Confidence 467888999999999999998643 221 344444 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 76 ~~lv~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~ql~~aL~~LH 118 (377)
T cd05629 76 LYLIMEFLPGGDLMTMLIKYD------TFSEDVTRFYMAECVLAIEAVH 118 (377)
T ss_pred eEEEEeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997543 5778888889999999999999
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of |
| >cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-08 Score=98.55 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=59.8
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceEEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
|...+.||+|+||.||+|...+ +.. .+++...........++
T Consensus 2 y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~l 81 (330)
T cd07834 2 YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYI 81 (330)
T ss_pred ceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEE
Confidence 6677889999999999999754 222 12222200001136799
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||++ ++|.++++.. ..+++..+..++.++++||+|||
T Consensus 82 v~e~~~-~~l~~~l~~~------~~l~~~~~~~i~~~l~~~l~~LH 120 (330)
T cd07834 82 VTELME-TDLHKVIKSP------QPLTDDHIQYFLYQILRGLKYLH 120 (330)
T ss_pred Eecchh-hhHHHHHhCC------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999998 5898888753 26899999999999999999999
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and |
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.9e-08 Score=97.47 Aligned_cols=84 Identities=17% Similarity=0.103 Sum_probs=59.5
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc--e------------------------------------eEEEeccc-cCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW--T------------------------------------AGYSEGTD-FKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~--~------------------------------------~g~~~~~~-~~~ 432 (549)
...++|...+.||+|+||.||++...... + .+++...+ ...
T Consensus 21 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~ 100 (364)
T cd07875 21 TVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEE 100 (364)
T ss_pred chhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccc
Confidence 34567888899999999999999864321 1 12222100 011
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++ ++.+++.. .+++.+...++.|+++||+|||
T Consensus 101 ~~~~~lv~e~~~~-~l~~~~~~--------~~~~~~~~~~~~qi~~aL~~LH 143 (364)
T cd07875 101 FQDVYIVMELMDA-NLCQVIQM--------ELDHERMSYLLYQMLCGIKHLH 143 (364)
T ss_pred cCeEEEEEeCCCC-CHHHHHHh--------cCCHHHHHHHHHHHHHHHHHHh
Confidence 2357999999975 67776642 3778888899999999999999
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.5e-08 Score=98.30 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=64.9
Q ss_pred ccCcCCCccccCceecEEEEEeCCC-ce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEK-WT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~-~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||++..... .. ++.+.. .+.
T Consensus 1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~-----~~~ 75 (360)
T cd05627 1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQD-----KRN 75 (360)
T ss_pred CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----CCE
Confidence 4678888999999999999987542 21 233433 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 76 ~~lv~E~~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~~L~~lH 118 (360)
T cd05627 76 LYLIMEFLPGGDMMTLLMKKD------TLSEEATQFYIAETVLAIDAIH 118 (360)
T ss_pred EEEEEeCCCCccHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997543 5888888999999999999999
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.2e-08 Score=97.23 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=65.0
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+++... +.. .+++.. .+.
T Consensus 1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~ 75 (331)
T cd05597 1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQD-----ENN 75 (331)
T ss_pred CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEec-----CCe
Confidence 467788899999999999998753 222 233444 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... ..+++.....++.|++.||+|||
T Consensus 76 ~~lv~e~~~g~~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH 119 (331)
T cd05597 76 LYLVMDYYVGGDLLTLLSKFE-----DRLPEDMARFYLAEMVLAIDSVH 119 (331)
T ss_pred EEEEEecCCCCcHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997532 35788888899999999999999
|
Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, |
| >KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.1e-08 Score=91.44 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=58.4
Q ss_pred ccCcCCCccccCceecEEEEEeCC-CceeEE--Eecc------------------------------ccCCCceEEEEEe
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWTAGY--SEGT------------------------------DFKGIDFKAVVFD 441 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~~g~--~~~~------------------------------~~~~~~~~~lv~e 441 (549)
+.|..-..+|+|+||+|||++-++ |.+.+. +.+. .+++.....||+|
T Consensus 2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE 81 (396)
T KOG0593|consen 2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE 81 (396)
T ss_pred cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence 345666789999999999999765 443111 1100 0234667899999
Q ss_pred ecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 442 YMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 442 y~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+..-=|.+.-+ . ...++.....+++.|+++|+.|+|
T Consensus 82 ~~dhTvL~eLe~-~-----p~G~~~~~vk~~l~Q~l~ai~~cH 118 (396)
T KOG0593|consen 82 YCDHTVLHELER-Y-----PNGVPSELVKKYLYQLLKAIHFCH 118 (396)
T ss_pred ecchHHHHHHHh-c-----cCCCCHHHHHHHHHHHHHHhhhhh
Confidence 999854444433 2 234777788899999999999999
|
|
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-07 Score=90.18 Aligned_cols=81 Identities=21% Similarity=0.221 Sum_probs=56.3
Q ss_pred CCccccCceecEEEEEeCCCc---e---------------------------------eEEEeccccCCCceEEEEEeec
Q 039925 400 SNMIGQGSFGSVYKGILGEKW---T---------------------------------AGYSEGTDFKGIDFKAVVFDYM 443 (549)
Q Consensus 400 ~~~lG~G~~g~Vy~~~~~~~~---~---------------------------------~g~~~~~~~~~~~~~~lv~ey~ 443 (549)
+..||+|+||.||+|+..++. . .+++.. ......++||||+
T Consensus 6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~---~~~~~~~lv~e~~ 82 (317)
T cd07868 6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLS---HADRKVWLLFDYA 82 (317)
T ss_pred ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHhcCCCCCcceeeeEec---CCCcEEEEEEecc
Confidence 468999999999999875422 1 222221 1145678999998
Q ss_pred CCCCcccccccCCC---CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 444 QNRSLEDWPYQSNN---KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 444 ~~GsL~~~l~~~~~---~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+ ++|.+++..... ......+++.....++.|++.||+|||
T Consensus 83 ~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH 125 (317)
T cd07868 83 E-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH 125 (317)
T ss_pred C-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 6 478777653220 011235788888999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.7e-08 Score=98.02 Aligned_cols=79 Identities=18% Similarity=0.106 Sum_probs=63.9
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+|+... +.. ++.+.. .+.
T Consensus 1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-----~~~ 75 (376)
T cd05598 1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQD-----KDN 75 (376)
T ss_pred CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEc-----CCE
Confidence 367788899999999999998643 221 233444 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... .++......++.|++.||+|||
T Consensus 76 ~~lv~E~~~~g~L~~~i~~~~------~~~~~~~~~~~~qi~~al~~lH 118 (376)
T cd05598 76 LYFVMDYIPGGDMMSLLIRLG------IFEEDLARFYIAELTCAIESVH 118 (376)
T ss_pred EEEEEeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997543 5777777889999999999999
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.6e-08 Score=98.28 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=63.7
Q ss_pred cCcCCCccccCceecEEEEEeCCCc-e--------------------------------------eEEEeccccCCCceE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKW-T--------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~-~--------------------------------------~g~~~~~~~~~~~~~ 436 (549)
.|...+.||+|+||.||+|+..... . ++++.. .+..
T Consensus 2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~-----~~~~ 76 (382)
T cd05625 2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQD-----KDNL 76 (382)
T ss_pred CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEe-----CCEE
Confidence 5777889999999999999874322 1 344554 6789
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 77 ~lv~E~~~gg~L~~~l~~~~------~~~e~~~~~~~~qi~~al~~lH 118 (382)
T cd05625 77 YFVMDYIPGGDMMSLLIRMG------IFPEDLARFYIAELTCAVESVH 118 (382)
T ss_pred EEEEeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997543 5777778889999999999999
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=95.28 Aligned_cols=83 Identities=16% Similarity=0.212 Sum_probs=59.3
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEecc---------
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGT--------- 428 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~--------- 428 (549)
...|...+.||+|+||.||+|.... +.. .+++...
T Consensus 4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (342)
T cd07854 4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVG 83 (342)
T ss_pred CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccc
Confidence 3568888899999999999998753 222 0111100
Q ss_pred ccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 429 DFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 429 ~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
........++||||++ ++|.+++... .+++.....++.|+++||.|||
T Consensus 84 ~~~~~~~~~lv~e~~~-~~L~~~~~~~-------~l~~~~~~~~~~qi~~aL~~LH 131 (342)
T cd07854 84 SLTELNSVYIVQEYME-TDLANVLEQG-------PLSEEHARLFMYQLLRGLKYIH 131 (342)
T ss_pred cccccceEEEEeeccc-ccHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 0000135689999997 5888887532 4788899999999999999999
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi |
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.5e-08 Score=97.70 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=66.6
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-e--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-T--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~--------------------------------------~g~~~~~~~~~ 432 (549)
...++|...+.||+|+||.||+++..... . .+++..
T Consensus 40 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~----- 114 (370)
T cd05621 40 MKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQD----- 114 (370)
T ss_pred CCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----
Confidence 46678999999999999999999975432 1 233444
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+...++||||+++|+|.++++.. .+++.....++.|++.||+|||
T Consensus 115 ~~~~~lv~Ey~~gg~L~~~l~~~-------~~~~~~~~~~~~qil~aL~~LH 159 (370)
T cd05621 115 DKYLYMVMEYMPGGDLVNLMSNY-------DVPEKWAKFYTAEVVLALDAIH 159 (370)
T ss_pred CCEEEEEEcCCCCCcHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999998743 3677888889999999999999
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-07 Score=94.85 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=66.4
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce---------------------------------------eEEEeccccCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT---------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------------~g~~~~~~~~~ 432 (549)
....|...+.||+|.||.||+++.+. |.. .+++..
T Consensus 33 ~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~----- 107 (382)
T KOG0032|consen 33 IKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFED----- 107 (382)
T ss_pred ccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEc-----
Confidence 45567778999999999999999765 322 344444
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++|||++.+|.|.+.+... .++......++.+++.|+.|||
T Consensus 108 ~~~~~lvmEL~~GGeLfd~i~~~-------~~sE~da~~~~~~il~av~~lH 152 (382)
T KOG0032|consen 108 PDSVYLVMELCEGGELFDRIVKK-------HYSERDAAGIIRQILEAVKYLH 152 (382)
T ss_pred CCeEEEEEEecCCchHHHHHHHc-------cCCHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999854 2888899999999999999999
|
|
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-07 Score=87.89 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=69.7
Q ss_pred ccccccCcCC-CccccCceecEEEEEeCCCce---------------------------eEEE----eccccCCCceEEE
Q 039925 391 STVTNEFSSS-NMIGQGSFGSVYKGILGEKWT---------------------------AGYS----EGTDFKGIDFKAV 438 (549)
Q Consensus 391 ~~~~~~~~~~-~~lG~G~~g~Vy~~~~~~~~~---------------------------~g~~----~~~~~~~~~~~~l 438 (549)
...|++|+.. ++||-|-.|.|..+..+.... .-++ .+..+.+.....+
T Consensus 57 ~~itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLi 136 (400)
T KOG0604|consen 57 YSITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDSPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLI 136 (400)
T ss_pred ccchhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcCHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEe
Confidence 3678888754 479999999999988643222 0001 1112445778899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||.|+||.|..-++.++ ...++.++.-.|..||+.|+.|||
T Consensus 137 VmE~meGGeLfsriq~~g----~~afTErea~eI~~qI~~Av~~lH 178 (400)
T KOG0604|consen 137 VMECMEGGELFSRIQDRG----DQAFTEREASEIMKQIGLAVRYLH 178 (400)
T ss_pred eeecccchHHHHHHHHcc----cccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998765 567999999999999999999999
|
|
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-07 Score=92.42 Aligned_cols=87 Identities=22% Similarity=0.187 Sum_probs=63.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce----------------------------------------------eEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT----------------------------------------------AGY 424 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~----------------------------------------------~g~ 424 (549)
..-+.|.....||+|.||.|-+|+... +.. +-.
T Consensus 94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L 173 (576)
T KOG0585|consen 94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL 173 (576)
T ss_pred eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence 456789999999999999999998643 322 000
Q ss_pred EeccccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 425 SEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 425 ~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..-.+.+..+..|||+|||..|.+...=... ..++..+..+|.++|..||+|||
T Consensus 174 iEvLDDP~s~~~YlVley~s~G~v~w~p~d~------~els~~~Ar~ylrDvv~GLEYLH 227 (576)
T KOG0585|consen 174 IEVLDDPESDKLYLVLEYCSKGEVKWCPPDK------PELSEQQARKYLRDVVLGLEYLH 227 (576)
T ss_pred EEeecCcccCceEEEEEeccCCccccCCCCc------ccccHHHHHHHHHHHHHHHHHHH
Confidence 1111223467789999999999876543321 23888999999999999999999
|
|
| >cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-07 Score=94.20 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=61.4
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc-e-------------------------------------eEEEeccc---cC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW-T-------------------------------------AGYSEGTD---FK 431 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~-------------------------------------~g~~~~~~---~~ 431 (549)
..++|...+.||+|+||.||+|+..... . .+.+.... ..
T Consensus 6 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 85 (311)
T cd07866 6 KLRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKR 85 (311)
T ss_pred ccccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheecccccccc
Confidence 3678999999999999999999975322 1 11111100 00
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....++||||++. ++.+.+.... ..+++.+...++.|+++||+|||
T Consensus 86 ~~~~~~lv~~~~~~-~l~~~~~~~~-----~~~~~~~~~~i~~~l~~al~~lH 132 (311)
T cd07866 86 KRGSVYMVTPYMDH-DLSGLLENPS-----VKLTESQIKCYMLQLLEGINYLH 132 (311)
T ss_pred cCceEEEEEecCCc-CHHHHHhccc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 12346899999875 6766665432 46899999999999999999999
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic |
| >KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-08 Score=95.55 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=59.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc--e------------------------------eEEEeccccCC-CceEEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW--T------------------------------AGYSEGTDFKG-IDFKAVV 439 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~--~------------------------------~g~~~~~~~~~-~~~~~lv 439 (549)
.+-.|...+++|+|+||.||+|...... + .-++.. .... +-...+|
T Consensus 22 ~~i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~knrEl~im~~l~HpNIV~L~~~f~~-~~~~d~~~lnlV 100 (364)
T KOG0658|consen 22 VEISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYKNRELQIMRKLDHPNIVRLLYFFSS-STESDEVYLNLV 100 (364)
T ss_pred eEEEEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcCcHHHHHHHhcCCcCeeeEEEEEEe-cCCCchhHHHHH
Confidence 3445677889999999999999975432 2 112221 1111 2356799
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||||. +|+.+++... ..+..++--...-+..|+.+||.|||
T Consensus 101 leymP~-tL~~~~r~~~--~~~~~mp~~~iKLYt~Qlfrgl~yLh 142 (364)
T KOG0658|consen 101 LEYMPE-TLYRVIRHYT--RANQRMPLLEIKLYTYQLFRGLAYLH 142 (364)
T ss_pred HHhchH-HHHHHHHHHh--hcCCCCceeeeHHHHHHHHHHHHHHH
Confidence 999998 9999988421 01234555555668899999999999
|
|
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.5e-08 Score=99.08 Aligned_cols=83 Identities=28% Similarity=0.304 Sum_probs=63.1
Q ss_pred ccCcCCCccccCceecEEEEEeCCCceeEEEecc---------------------------------ccCCCceEEEEEe
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKWTAGYSEGT---------------------------------DFKGIDFKAVVFD 441 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~g~~~~~---------------------------------~~~~~~~~~lv~e 441 (549)
++|..-+.||+|+||.||||+.++...+-++..+ .|....+.++|+|
T Consensus 2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte 81 (808)
T KOG0597|consen 2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE 81 (808)
T ss_pred cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence 4666778899999999999987543320000000 0222567899999
Q ss_pred ecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 442 YMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 442 y~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+.+ +|..+|...+ .++......|+.+...||.|||
T Consensus 82 ~a~g-~L~~il~~d~------~lpEe~v~~~a~~LVsaL~yLh 117 (808)
T KOG0597|consen 82 YAVG-DLFTILEQDG------KLPEEQVRAIAYDLVSALYYLH 117 (808)
T ss_pred hhhh-hHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9987 9999998654 6888999999999999999999
|
|
| >cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-07 Score=92.57 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=59.8
Q ss_pred CcCCCccccCceecEEEEEeCC---Cce--------------------------------------eEEEeccccCCCce
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE---KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~---~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
|...+.||+|+||.||+|.... +.. .+++.. ..+..
T Consensus 2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~~~ 78 (316)
T cd07842 2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLE---HADKS 78 (316)
T ss_pred ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeC---CCCce
Confidence 5566789999999999999854 111 344443 11267
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++ ++.+++..... .....++......++.|++.|++|||
T Consensus 79 ~~lv~e~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~i~~qi~~~l~~lH 125 (316)
T cd07842 79 VYLLFDYAEH-DLWQIIKFHRQ-AKRVSIPPSMVKSLLWQILNGVHYLH 125 (316)
T ss_pred EEEEEeCCCc-CHHHHHHhhcc-CCCcCcCHHHHHHHHHHHHHHHHHHH
Confidence 8999999985 67776653321 01236788888999999999999999
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the |
| >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-07 Score=88.99 Aligned_cols=46 Identities=26% Similarity=0.224 Sum_probs=40.9
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++++||+++|+|.+++.... .+++..+..++.++++|+.|||
T Consensus 59 ~~~~~l~~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~~l~~~l~~lh 104 (244)
T smart00220 59 EDKLYLVMEYCDGGDLFDLLKKRG------RLSEDEARFYARQILSALEYLH 104 (244)
T ss_pred CCEEEEEEeCCCCCCHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999987643 3889999999999999999999
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. |
| >cd00180 PKc Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.3e-07 Score=82.72 Aligned_cols=72 Identities=26% Similarity=0.397 Sum_probs=57.4
Q ss_pred cccCceecEEEEEeCC-Cc-e-----------------------------------eEEEeccccCCCceEEEEEeecCC
Q 039925 403 IGQGSFGSVYKGILGE-KW-T-----------------------------------AGYSEGTDFKGIDFKAVVFDYMQN 445 (549)
Q Consensus 403 lG~G~~g~Vy~~~~~~-~~-~-----------------------------------~g~~~~~~~~~~~~~~lv~ey~~~ 445 (549)
||+|++|.||++...+ +. + .+++.. ....++++||+++
T Consensus 1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-----~~~~~~~~e~~~~ 75 (215)
T cd00180 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFED-----ENHLYLVMEYCEG 75 (215)
T ss_pred CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeec-----CCeEEEEEecCCC
Confidence 6899999999999863 22 1 222222 3578999999999
Q ss_pred CCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 446 RSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 446 GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|.+++.... ..+++..+..++.++++++.|||
T Consensus 76 ~~l~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lh 109 (215)
T cd00180 76 GSLKDLLKENE-----GKLSEDEILRILLQILEGLEYLH 109 (215)
T ss_pred CcHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999987642 35889999999999999999999
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which |
| >KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-07 Score=89.43 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=64.2
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce------------eE----------------------EEeccccCCCceE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------AG----------------------YSEGTDFKGIDFK 436 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------~g----------------------~~~~~~~~~~~~~ 436 (549)
+.-++|...+.|++|.||.||+|+... +.+ .| +-.-.....-+.+
T Consensus 73 rsv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~i 152 (419)
T KOG0663|consen 73 RSVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKI 152 (419)
T ss_pred ccHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEecccccee
Confidence 345678888999999999999998643 332 00 0000001113568
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|||||++ +|..++...+ +++...+..-+..|+.+|++|||
T Consensus 153 y~VMe~~Eh-DLksl~d~m~-----q~F~~~evK~L~~QlL~glk~lH 194 (419)
T KOG0663|consen 153 YIVMEYVEH-DLKSLMETMK-----QPFLPGEVKTLMLQLLRGLKHLH 194 (419)
T ss_pred eeeHHHHHh-hHHHHHHhcc-----CCCchHHHHHHHHHHHHHHHHHh
Confidence 999999997 8888888654 67888888889999999999999
|
|
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-08 Score=90.79 Aligned_cols=46 Identities=26% Similarity=0.295 Sum_probs=42.6
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..+.++|+|.|+.|.|.|+|...- +++.+...+|++|+-+|++|||
T Consensus 95 ~sF~FlVFdl~prGELFDyLts~V------tlSEK~tR~iMrqlfegVeylH 140 (411)
T KOG0599|consen 95 DAFVFLVFDLMPRGELFDYLTSKV------TLSEKETRRIMRQLFEGVEYLH 140 (411)
T ss_pred cchhhhhhhhcccchHHHHhhhhe------eecHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998754 7899998999999999999999
|
|
| >cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.3e-07 Score=92.04 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=59.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccc-cCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTD-FKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~-~~~ 432 (549)
...+.|...+.||+|+||.||+|.... +.. .+++.... ...
T Consensus 13 ~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 92 (353)
T cd07850 13 TVLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEE 92 (353)
T ss_pred hhhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccc
Confidence 345678888999999999999998642 221 22222100 011
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||++ |+|.+.+.. .+++.....++.|+++||+|||
T Consensus 93 ~~~~~lv~e~~~-~~l~~~~~~--------~l~~~~~~~~~~ql~~aL~~LH 135 (353)
T cd07850 93 FQDVYLVMELMD-ANLCQVIQM--------DLDHERMSYLLYQMLCGIKHLH 135 (353)
T ss_pred cCcEEEEEeccC-CCHHHHHhh--------cCCHHHHHHHHHHHHHHHHHHH
Confidence 235689999996 588877752 2778888899999999999999
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK |
| >cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.8e-07 Score=94.38 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=59.5
Q ss_pred ccccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccc-cC
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTD-FK 431 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~-~~ 431 (549)
|+..++|...+.||+|+||.||+|+... +.. .+++.... ..
T Consensus 11 ~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 90 (342)
T cd07879 11 WELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGD 90 (342)
T ss_pred hccccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCC
Confidence 4556789889999999999999998643 222 12222100 00
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....++|+||++. ++..+.. ..+++.....++.|+++||+|||
T Consensus 91 ~~~~~~lv~e~~~~-~l~~~~~--------~~~~~~~~~~~~~qi~~aL~~LH 134 (342)
T cd07879 91 EFQDFYLVMPYMQT-DLQKIMG--------HPLSEDKVQYLVYQMLCGLKYIH 134 (342)
T ss_pred CCceEEEEeccccc-CHHHHHc--------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 11345899999874 6665542 24788889999999999999999
|
Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13 |
| >cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.9e-07 Score=92.47 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=58.0
Q ss_pred CcCCCccccCceecEEEEEeCCC--c--e-------------------------------------eEEEeccccCCCce
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEK--W--T-------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~--~--~-------------------------------------~g~~~~~~~~~~~~ 435 (549)
|...+.||+|+||.||++..... . + .+.+.. .......
T Consensus 2 y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-~~~~~~~ 80 (332)
T cd07857 2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIV-FPGNFNE 80 (332)
T ss_pred ceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeee-ccccCCc
Confidence 56677899999999999998644 1 1 111110 0011234
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++++||++ ++|.+++... ..+++.....++.|++.||+|||
T Consensus 81 ~~~~~e~~~-~~L~~~l~~~------~~~~~~~~~~~~~qi~~aL~~LH 122 (332)
T cd07857 81 LYLYEELME-ADLHQIIRSG------QPLTDAHFQSFIYQILCGLKYIH 122 (332)
T ss_pred EEEEEeccc-CCHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 678888886 6899988653 36889999999999999999999
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co |
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.4e-08 Score=104.66 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=63.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~ 432 (549)
--.+||...++||+|+||.|..++.+. +.+ +.++.+
T Consensus 72 l~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD----- 146 (1317)
T KOG0612|consen 72 LKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQD----- 146 (1317)
T ss_pred CCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcC-----
Confidence 467799999999999999999998754 333 122344
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+.+.|+||||||||+|-.++.... +++..+..-++..|..|+.-+|
T Consensus 147 ~~~LYlVMdY~pGGDlltLlSk~~------~~pE~~ArFY~aEiVlAldslH 192 (1317)
T KOG0612|consen 147 ERYLYLVMDYMPGGDLLTLLSKFD------RLPEDWARFYTAEIVLALDSLH 192 (1317)
T ss_pred ccceEEEEecccCchHHHHHhhcC------CChHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999998653 4555555567777888888777
|
|
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.8e-07 Score=89.56 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=71.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce---------------------------------eEEEeccccCCCceEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT---------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------~g~~~~~~~~~~~~~~ 437 (549)
...+.|+.-++||+||||.||-++.+. |+. +-+|....+...+..+
T Consensus 182 vt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LC 261 (591)
T KOG0986|consen 182 VTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALC 261 (591)
T ss_pred ccccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceE
Confidence 455678899999999999999988654 332 2233333344478999
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|+..|.||+|.=+|...+ ...++..+.+-+|.+|+-||++||
T Consensus 262 lVLtlMNGGDLkfHiyn~g----~~gF~e~ra~FYAAEi~cGLehlH 304 (591)
T KOG0986|consen 262 LVLTLMNGGDLKFHIYNHG----NPGFDEQRARFYAAEIICGLEHLH 304 (591)
T ss_pred EEEEeecCCceeEEeeccC----CCCCchHHHHHHHHHHHhhHHHHH
Confidence 9999999999999998765 467999999999999999999999
|
|
| >KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.5e-07 Score=93.29 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=65.5
Q ss_pred cCcCCCccccCceecEEEEEeCCCce-----------------------------------------eEEEeccccCCCc
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------------~g~~~~~~~~~~~ 434 (549)
.|...++||+|.||.|.||...+... +.++.. +.
T Consensus 187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~f-----r~ 261 (586)
T KOG0667|consen 187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYF-----RN 261 (586)
T ss_pred EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccc-----cc
Confidence 56778899999999999999765332 455555 78
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+.|||+|.+.. +|+++|+..+ -..++......|+.||+.||.+||
T Consensus 262 HlciVfELL~~-NLYellK~n~----f~Glsl~~ir~~~~Qil~~L~~L~ 306 (586)
T KOG0667|consen 262 HLCIVFELLST-NLYELLKNNK----FRGLSLPLVRKFAQQILTALLFLH 306 (586)
T ss_pred ceeeeehhhhh-hHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998765 9999999765 345888888999999999999999
|
|
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-07 Score=102.26 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=64.2
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~ 433 (549)
..+-.|..+..||.|.||.||-|.-.+ |.. +|+-.+ +
T Consensus 1232 nV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvH-----R 1306 (1509)
T KOG4645|consen 1232 NVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVH-----R 1306 (1509)
T ss_pred cceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeec-----H
Confidence 456677788899999999999998543 332 455445 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..+|.||||++|+|.+.+.... ..+......+..|++.|++|||
T Consensus 1307 ekv~IFMEyC~~GsLa~ll~~gr------i~dE~vt~vyt~qll~gla~LH 1351 (1509)
T KOG4645|consen 1307 EKVYIFMEYCEGGSLASLLEHGR------IEDEMVTRVYTKQLLEGLAYLH 1351 (1509)
T ss_pred HHHHHHHHHhccCcHHHHHHhcc------hhhhhHHHHHHHHHHHHHHHHH
Confidence 67889999999999999998543 4555555668899999999999
|
|
| >cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.6e-07 Score=92.24 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=62.6
Q ss_pred ccccccCcCCCccccCceecEEEEEeC-CCce-------------------------------------eEEEeccc-cC
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILG-EKWT-------------------------------------AGYSEGTD-FK 431 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-------------------------------------~g~~~~~~-~~ 431 (549)
|.++++|...+.||+|+||.||+|... ++.. .+++.... ..
T Consensus 13 ~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~ 92 (345)
T cd07877 13 WEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLE 92 (345)
T ss_pred hhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeeccccc
Confidence 578899999999999999999999854 2322 12221100 00
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....+++++|+ +++|.++++.. .+++..+..++.|+++|++|||
T Consensus 93 ~~~~~~lv~~~~-~~~L~~~~~~~-------~l~~~~~~~i~~qi~~aL~~LH 137 (345)
T cd07877 93 EFNDVYLVTHLM-GADLNNIVKCQ-------KLTDDHVQFLIYQILRGLKYIH 137 (345)
T ss_pred ccccEEEEehhc-ccCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 123467788876 78998887643 4889999999999999999999
|
Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14 |
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3e-07 Score=92.36 Aligned_cols=81 Identities=14% Similarity=0.104 Sum_probs=61.1
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce--------------------------------------eEEEeccccCCCc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------~g~~~~~~~~~~~ 434 (549)
-...|...+.||+||...||++.-.+..+ +.|-.. ++
T Consensus 359 kg~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~-----d~ 433 (677)
T KOG0596|consen 359 KGREYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVT-----DG 433 (677)
T ss_pred CcchhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeecc-----Cc
Confidence 34467888899999999999998766554 222222 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+|+|||| ..-+|..+|+.+. .....| .+..+-.|+..|+.|+|
T Consensus 434 ~lYmvmE~-Gd~DL~kiL~k~~----~~~~~~-~lk~ywkqML~aV~~IH 477 (677)
T KOG0596|consen 434 YLYMVMEC-GDIDLNKILKKKK----SIDPDW-FLKFYWKQMLLAVKTIH 477 (677)
T ss_pred eEEEEeec-ccccHHHHHHhcc----CCCchH-HHHHHHHHHHHHHHHHH
Confidence 89999998 4559999998765 234456 45568899999999999
|
|
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.7e-07 Score=99.25 Aligned_cols=79 Identities=20% Similarity=0.240 Sum_probs=64.5
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cc-e-------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KW-T-------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~-~-------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+|.... +. + ++++.. ...
T Consensus 4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~-----~~~ 78 (669)
T cd05610 4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQS-----ANN 78 (669)
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEE-----CCE
Confidence 578888999999999999999762 22 1 233333 567
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... .+++.....|+.||+.||+|||
T Consensus 79 ~~lVmEy~~g~~L~~li~~~~------~l~~~~~~~i~~qil~aL~yLH 121 (669)
T cd05610 79 VYLVMEYLIGGDVKSLLHIYG------YFDEEMAVKYISEVALALDYLH 121 (669)
T ss_pred EEEEEeCCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999997543 5788888999999999999999
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >PLN03224 probable serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.3e-07 Score=94.22 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=39.7
Q ss_pred ceEEEEEeecCCCCcccccccCCCCC------------------CCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKL------------------KPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~------------------~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|+|.++++...... ....++|.....++.|+++||+|||
T Consensus 258 ~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH 326 (507)
T PLN03224 258 GSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLH 326 (507)
T ss_pred CceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999997532100 1123567788899999999999999
|
|
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-07 Score=101.49 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=35.4
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCC-chhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSL-SMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l-~~~~~~~ia~~va~gl~yLH 484 (549)
..||=||||+.-.++++++... .. .-...+++.++|++|++|+|
T Consensus 670 ~LYIQMEyCE~~ll~~iI~~N~------~~~~~d~~wrLFreIlEGLaYIH 714 (1351)
T KOG1035|consen 670 ILYIQMEYCEKTLLRDIIRRNH------FNSQRDEAWRLFREILEGLAYIH 714 (1351)
T ss_pred EEEEEHhhhhhhHHHHHHHhcc------cchhhHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999998654 11 23445789999999999999
|
|
| >PHA03210 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.6e-07 Score=94.43 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=58.2
Q ss_pred cccCcCCCccccCceecEEEEEeCCCc----------------e------------------------------------
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKW----------------T------------------------------------ 421 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~----------------~------------------------------------ 421 (549)
.++|...+.||+|+||.||++.++... .
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv 226 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENIL 226 (501)
T ss_pred hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcC
Confidence 467888899999999999998653210 0
Q ss_pred --eEEEeccccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 422 --AGYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 422 --~g~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++++.. .+..++|+||+. +++.+++...... ............|+.|++.||+|||
T Consensus 227 ~l~~~~~~-----~~~~~lv~e~~~-~~l~~~l~~~~~~-~~~~~~~~~~~~i~~ql~~aL~yLH 284 (501)
T PHA03210 227 KIEEILRS-----EANTYMITQKYD-FDLYSFMYDEAFD-WKDRPLLKQTRAIMKQLLCAVEYIH 284 (501)
T ss_pred cEeEEEEE-----CCeeEEEEeccc-cCHHHHHhhcccc-ccccccHHHHHHHHHHHHHHHHHHH
Confidence 455555 667899999875 5777776543200 0112234456689999999999999
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-08 Score=104.68 Aligned_cols=126 Identities=22% Similarity=0.257 Sum_probs=100.4
Q ss_pred CCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeeccccccccccc-ccCCCCCCCEE
Q 039925 57 GYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLD-FIGNPSAIQVM 135 (549)
Q Consensus 57 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~-~~~~l~~L~~L 135 (549)
..|.+.+.++|.+. .+-.++.-++.|+.|+|++|+++. +. .+..|++| ++|||++|.+. .+|. ....+. |+.|
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~L-khLDlsyN~L~-~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKL-KHLDLSYNCLR-HVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccc-cccccccchhc-cccccchhhhh-heee
Confidence 46788899999998 666788888999999999999983 43 78899999 99999999998 4443 233334 9999
Q ss_pred EeecceeeeeCCccccCCCCCCEEecccCcceeccc-ccccccc-cceeeCCCCcCc
Q 039925 136 IFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIP-SFIFNIS-LKWNFLPENSFT 190 (549)
Q Consensus 136 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~-L~~L~l~~n~l~ 190 (549)
.|++|.++.. ..+.++.+|+.||+++|-+.+... ..+..+. |+.|+|.+|.+-
T Consensus 238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999999833 357889999999999998875322 2345666 999999999885
|
|
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.1e-07 Score=93.35 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=66.9
Q ss_pred cccccCcCCCccccCceecEEEEEeC-CCce-----------------------eEEEecc-------ccCCCceEEEEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG-EKWT-----------------------AGYSEGT-------DFKGIDFKAVVF 440 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-----------------------~g~~~~~-------~~~~~~~~~lv~ 440 (549)
...++|.....+|.|.||.|||++.. .+.. .-.|.+. .|...+..++.|
T Consensus 12 nP~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicM 91 (829)
T KOG0576|consen 12 NPQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICM 91 (829)
T ss_pred CCccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEE
Confidence 56778998999999999999999853 2221 0111111 023366789999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+.+|+|.+.-+.. .+++.-+...+++...+|++|||
T Consensus 92 EycgggslQdiy~~T------gplselqiayvcRetl~gl~ylh 129 (829)
T KOG0576|consen 92 EYCGGGSLQDIYHVT------GPLSELQIAYVCRETLQGLKYLH 129 (829)
T ss_pred EecCCCcccceeeec------ccchhHHHHHHHhhhhccchhhh
Confidence 999999999998854 47888888899999999999999
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.1e-08 Score=93.13 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=26.0
Q ss_pred CCEeecccccccc-cCCcccccccCccceeeecccccccccccccCCCCCCCEEEeec
Q 039925 83 LEYLLLANNHFSG-KIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKE 139 (549)
Q Consensus 83 L~~L~Ls~n~l~~-~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (549)
|++||||...|+. .+-.-+..|.+| +.|.|.++++.+.+...+.+-.+|+.|+|+.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kL-k~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKL-KNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhh-hhccccccccCcHHHHHHhccccceeecccc
Confidence 4555555544441 111223444455 5555555555444444444445555555544
|
|
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1e-06 Score=91.23 Aligned_cols=87 Identities=22% Similarity=0.281 Sum_probs=64.7
Q ss_pred ccCcCCCccccCceecEEEEEeC-CCce---------------------------------eEEEeccccC----CCceE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILG-EKWT---------------------------------AGYSEGTDFK----GIDFK 436 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~---------------------------------~g~~~~~~~~----~~~~~ 436 (549)
..|...+.||+||||.||+|+-+ .|.. +.++...+-. ..+..
T Consensus 13 y~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~ 92 (732)
T KOG4250|consen 13 YLWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLP 92 (732)
T ss_pred cceeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccc
Confidence 34566778999999999999943 3432 1112111111 14567
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+|||||++|||++.|.+-. -...++....+.+..+++.||.|||
T Consensus 93 vlvmEyC~gGsL~~~L~~PE---N~~GLpE~e~l~lL~d~~~al~~Lr 137 (732)
T KOG4250|consen 93 VLVMEYCSGGSLRKVLNSPE---NAYGLPESEFLDLLSDLVSALRHLR 137 (732)
T ss_pred eEEEeecCCCcHHHHhcCcc---cccCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998654 2456899999999999999999999
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.8e-07 Score=87.07 Aligned_cols=79 Identities=15% Similarity=0.123 Sum_probs=34.2
Q ss_pred ceeeeccccccc--ccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceec-ccccccccc-cceeeC
Q 039925 109 TKLFICETHLSG--QLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL-IPSFIFNIS-LKWNFL 184 (549)
Q Consensus 109 ~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~-L~~L~l 184 (549)
+.|||.+|.|+. .+...+.+||.|++|+|+.|++...+-..-..+.+|+.|-|.+..+.-. ....+..++ ++.|.+
T Consensus 74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm 153 (418)
T KOG2982|consen 74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM 153 (418)
T ss_pred hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence 445555555442 1223344555555555555555422211112344555555555444321 112233444 555555
Q ss_pred CCC
Q 039925 185 PEN 187 (549)
Q Consensus 185 ~~n 187 (549)
+.|
T Consensus 154 S~N 156 (418)
T KOG2982|consen 154 SDN 156 (418)
T ss_pred ccc
Confidence 555
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.5e-08 Score=80.64 Aligned_cols=105 Identities=19% Similarity=0.287 Sum_probs=61.9
Q ss_pred CCCEEEccCCcceecCCc---cccCCCCCCEeecccccccccCCcccccc-cCccceeeecccccccccccccCCCCCCC
Q 039925 58 YLRFINLVDNNFRGEIPE---KVGRLFRLEYLLLANNHFSGKIPANLSHC-SNLLTKLFICETHLSGQLLDFIGNPSAIQ 133 (549)
Q Consensus 58 ~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~ 133 (549)
.+..++|+.|.+- .+++ .+.....|...+|++|.+. .+|+.|... +.+ +.|++++|.|. .+|..+..++.|+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~-t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTA-TTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchh-hhhhcchhhhh-hchHHHhhhHHhh
Confidence 3455667766654 3333 3344455666677777776 566555433 344 66666666665 4455566666666
Q ss_pred EEEeecceeeeeCCccccCCCCCCEEecccCcce
Q 039925 134 VMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFS 167 (549)
Q Consensus 134 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 167 (549)
.|+++.|.+. ..|..+..+.+|..|+..+|.+.
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 6666666666 55555555666666666666554
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.5e-08 Score=101.86 Aligned_cols=121 Identities=15% Similarity=0.114 Sum_probs=59.0
Q ss_pred ceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccc-cccccccceeeCCCC
Q 039925 109 TKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPS-FIFNISLKWNFLPEN 187 (549)
Q Consensus 109 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~L~~L~l~~n 187 (549)
...+.++|.+. .+..++.-++.|+.|||++|+++.. +.+..+++|++|||+.|.+. .+|. ...+..|+.|.+++|
T Consensus 167 ~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 167 ATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeeccc
Confidence 44555555554 3334444455666666666666522 24555666666666666655 2332 122222666666666
Q ss_pred cCcccCchhhhhcCCCCcEeeecc----cccccccccCcccccEEEccccccc
Q 039925 188 SFTGNLPLEIGVTLPKGRNYYILL----LAQKLYWSDVSTTATIIAMGGNQIS 236 (549)
Q Consensus 188 ~l~~~~p~~~~~~l~~L~~L~l~~----~~~~l~~l~~~~~L~~L~l~~n~l~ 236 (549)
.++ .+- .+. ++.+|+.||++. ....+..+.....|+.|+|.+|.+-
T Consensus 243 ~l~-tL~-gie-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 ALT-TLR-GIE-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHH-hhh-hHH-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 554 111 122 445555555444 2223333333345566666666553
|
|
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-06 Score=85.76 Aligned_cols=83 Identities=12% Similarity=0.120 Sum_probs=64.8
Q ss_pred cccccCcCCCccccCceecEEEEEe--CCCce------------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGIL--GEKWT------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~--~~~~~------------------------------------~g~~~~~~~~~~ 433 (549)
...+=|+.++.||+|.|++|-.|+. .+..| +.+... .
T Consensus 15 kIAGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDT-----Q 89 (864)
T KOG4717|consen 15 KIAGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDT-----Q 89 (864)
T ss_pred ceeeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcc-----c
Confidence 4556688899999999999987753 33333 112222 5
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..+|||.|.-.+|+|++||-++. ..+......++..||..|+.|+|
T Consensus 90 TKlyLiLELGD~GDl~DyImKHe-----~Gl~E~La~kYF~QI~~AI~YCH 135 (864)
T KOG4717|consen 90 TKLYLILELGDGGDLFDYIMKHE-----EGLNEDLAKKYFAQIVHAISYCH 135 (864)
T ss_pred ceEEEEEEecCCchHHHHHHhhh-----ccccHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999998765 45778778889999999999999
|
|
| >KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.7e-06 Score=86.99 Aligned_cols=53 Identities=25% Similarity=0.260 Sum_probs=47.2
Q ss_pred eEEEeccccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 422 AGYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 422 ~g~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.|.|.. ....++|.+|++.|+|.|.+.... ..++|.-...+.++++.||+|+|
T Consensus 13 ~g~~~~-----~~~~~~i~~~c~rGsl~D~i~~~~-----~~~d~~F~~s~~rdi~~Gl~ylh 65 (484)
T KOG1023|consen 13 IGASVD-----GPEMIVIWEYCSRGSLLDILSNED-----IKLDYFFILSFIRDISKGLAYLH 65 (484)
T ss_pred eeeEec-----CCceEEEEeeecCccHHhHHhccc-----cCccHHHHHHHHHHHHHHHHHHh
Confidence 566776 678899999999999999998754 57999999999999999999999
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.7e-08 Score=80.01 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=57.1
Q ss_pred CCEeecccccccccCCcccc---cccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEE
Q 039925 83 LEYLLLANNHFSGKIPANLS---HCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYD 159 (549)
Q Consensus 83 L~~L~Ls~n~l~~~~p~~l~---~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 159 (549)
+..++|+.|.+. .+++... ....| ...+|++|.+....+..-...+.+++|++++|.|+ .+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el-~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYEL-TKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceE-EEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 445556666554 3444332 23333 44566666665333333334455666666666665 556556666666666
Q ss_pred ecccCcceecccccccccc-cceeeCCCCcCcccCch
Q 039925 160 NINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPL 195 (549)
Q Consensus 160 ~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~ 195 (549)
+++.|.+. ..|+.+..+. +-.|+..+|.+. .+|.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~ 140 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDV 140 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcH
Confidence 66666655 3445555455 555665555554 4443
|
|
| >KOG0586 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.8e-06 Score=85.81 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=66.3
Q ss_pred cccccCcCCCccccCceecEEEEEeC--CCce------------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG--EKWT------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~--~~~~------------------------------------~g~~~~~~~~~~ 433 (549)
...+.|.....||+|.|+.|..|+.. ++.| +.+... +
T Consensus 53 ~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t-----~ 127 (596)
T KOG0586|consen 53 NSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIET-----E 127 (596)
T ss_pred ccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeee-----c
Confidence 55677888999999999999999864 3333 344555 7
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..+++||||+.+|.+++++..++ .........+..|+.+|++|||
T Consensus 128 ~~lylV~eya~~ge~~~yl~~~g------r~~e~~ar~~F~q~vsaveYcH 172 (596)
T KOG0586|consen 128 ATLYLVMEYASGGELFDYLVKHG------RMKEKEARAKFRQIVSAVEYCH 172 (596)
T ss_pred ceeEEEEEeccCchhHHHHHhcc------cchhhhhhhhhHHHHHHHHHHh
Confidence 78999999999999999999765 3444666678899999999999
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2e-07 Score=86.75 Aligned_cols=205 Identities=17% Similarity=0.161 Sum_probs=122.9
Q ss_pred ceeeeccccccccc-cccc-CCCCCCCEEEeecceeee--eCCccccCCCCCCEEecccCcceecccccccccc-cceee
Q 039925 109 TKLFICETHLSGQL-LDFI-GNPSAIQVMIFKENSLEG--KFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNF 183 (549)
Q Consensus 109 ~~L~Ls~n~l~~~~-~~~~-~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~ 183 (549)
+.|.+.++.|...- ...| ...+.++.|||.+|.|+. .+...+.+|+.|++|+|+.|.+...+...-..+. |+.|-
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV 127 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence 44555555543211 1122 235789999999999983 3444567899999999999998854433223444 89999
Q ss_pred CCCCcCcccCchhhhhcCCCCcEeeecccc-c--cc---ccccCcccccEEEcccccccccc-ChhhhhccccCccEEEc
Q 039925 184 LPENSFTGNLPLEIGVTLPKGRNYYILLLA-Q--KL---YWSDVSTTATIIAMGGNQISGTI-TLGIKKLIFVNLYALTM 256 (549)
Q Consensus 184 l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~-~--~l---~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~~~L~~L~L 256 (549)
|.+..+...-..++...+|.++.|+|+.+- . ++ ..-...+.+.+|.+..|....-. -..+... |+++..+-+
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-Fpnv~sv~v 206 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-FPNVNSVFV 206 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-cccchheee
Confidence 998888765555555688888888887520 0 00 00011122233332222211000 0000111 377777888
Q ss_pred CCCcccccCCCcCccccCCccccCeeeccCccccc-cCCccccCCCCCCEEEccCCcccccC
Q 039925 257 VKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQG-NLPSSLGYYQNLMELSVSRNKLSASL 317 (549)
Q Consensus 257 ~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~ 317 (549)
..|.+...-. -.....++.+..|+|+.|+|.. .--+.+.+++.|..|.+++|.+...+
T Consensus 207 ~e~PlK~~s~---ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 207 CEGPLKTESS---EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred ecCcccchhh---cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 8887764332 2345567777788898888862 12356778889999999998887543
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.3e-08 Score=90.01 Aligned_cols=176 Identities=15% Similarity=0.120 Sum_probs=96.4
Q ss_pred ceeeecccccccc-cccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCc-ceecc-cccccccc-cceeeC
Q 039925 109 TKLFICETHLSGQ-LLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNE-FSGLI-PSFIFNIS-LKWNFL 184 (549)
Q Consensus 109 ~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~-p~~~~~l~-L~~L~l 184 (549)
++||||+..|+.. +-..+..+.+|+.|.|.++++...+...+.+..+|+.|+|+.+. ++... .-.+.+++ |..|++
T Consensus 188 q~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNl 267 (419)
T KOG2120|consen 188 QHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNL 267 (419)
T ss_pred HHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCc
Confidence 6677776666532 23344556667777777777766666666666777777776643 22111 11234555 666666
Q ss_pred CCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEcccccc---ccccChhhhhccccCccEEEcCCCcc
Q 039925 185 PENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQI---SGTITLGIKKLIFVNLYALTMVKNKL 261 (549)
Q Consensus 185 ~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l---~~~~~~~~~~l~~~~L~~L~L~~n~l 261 (549)
+.+.++...-..+. .+..++|+.|++++..= ...+..-...+ ++|.+|||++|..
T Consensus 268 sWc~l~~~~Vtv~V--------------------~hise~l~~LNlsG~rrnl~~sh~~tL~~rc--p~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 268 SWCFLFTEKVTVAV--------------------AHISETLTQLNLSGYRRNLQKSHLSTLVRRC--PNLVHLDLSDSVM 325 (419)
T ss_pred hHhhccchhhhHHH--------------------hhhchhhhhhhhhhhHhhhhhhHHHHHHHhC--Cceeeeccccccc
Confidence 66655432211110 12334566666665421 11222223455 7778888877643
Q ss_pred cccCCCcCccccCCccccCeeeccCccccccCCc---cccCCCCCCEEEccCC
Q 039925 262 SGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPS---SLGYYQNLMELSVSRN 311 (549)
Q Consensus 262 ~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N 311 (549)
-.. .....|..++.|++|.++.|... +|. .+...|.|.+||+.+.
T Consensus 326 l~~---~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 326 LKN---DCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cCc---hHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 211 12345566777888887777543 343 3456777888777554
|
|
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-07 Score=86.03 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=63.2
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------eEEEeccccCCCceEEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
-++.|+.-++||+|.|..||++.... |.. .-+-....+....+.++|
T Consensus 9 f~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylv 88 (355)
T KOG0033|consen 9 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 88 (355)
T ss_pred cchhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEE
Confidence 35677788899999999999987543 322 000011112236788999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|+|.||+|..-|..+. .++....-.+.+||.+|+.|+|
T Consensus 89 Fe~m~G~dl~~eIV~R~------~ySEa~aSH~~rQiLeal~yCH 127 (355)
T KOG0033|consen 89 FDLVTGGELFEDIVARE------FYSEADASHCIQQILEALAYCH 127 (355)
T ss_pred EecccchHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987776433 5777888889999999999999
|
|
| >smart00750 KIND kinase non-catalytic C-lobe domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.4e-06 Score=76.09 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=28.9
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhh
Q 039925 511 SVLTIGILCSVESPSERMEKPYIVSKLSHAREN 543 (549)
Q Consensus 511 ~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~ 543 (549)
++.+++.+||+.+|++||++.|+++.+..+..+
T Consensus 140 ~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~~ 172 (176)
T smart00750 140 SFADFMRVCASRLPQRREAANHYLAHCRALFAE 172 (176)
T ss_pred hHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Confidence 588999999999999999999999988766543
|
It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features |
| >KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.5e-06 Score=78.38 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=63.0
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce--------------------------------eE--EEecc--ccCCCceEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------AG--YSEGT--DFKGIDFKA 437 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------~g--~~~~~--~~~~~~~~~ 437 (549)
++.|.....+|+|.||.|.++..+.... .| -|.-. -+.-.+..+
T Consensus 88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiC 167 (415)
T KOG0671|consen 88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHIC 167 (415)
T ss_pred ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceE
Confidence 5667788889999999999998765532 01 01110 001145788
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|+|.| +-|++++|+... -.+++-.+...|+.|++++++|||
T Consensus 168 ivfell-G~S~~dFlk~N~----y~~fpi~~ir~m~~QL~~sv~fLh 209 (415)
T KOG0671|consen 168 IVFELL-GLSTFDFLKENN----YIPFPIDHIRHMGYQLLESVAFLH 209 (415)
T ss_pred EEEecc-ChhHHHHhccCC----ccccchHHHHHHHHHHHHHHHHHH
Confidence 999975 459999998754 456888888999999999999999
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.2e-07 Score=82.44 Aligned_cols=224 Identities=19% Similarity=0.192 Sum_probs=106.0
Q ss_pred cCCCCCCEEEccCCcceec----CCccccCCCCCCEeeccccccc---ccCCcccccccCccceeeeccccccccccccc
Q 039925 54 GNFGYLRFINLVDNNFRGE----IPEKVGRLFRLEYLLLANNHFS---GKIPANLSHCSNLLTKLFICETHLSGQLLDFI 126 (549)
Q Consensus 54 ~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~ 126 (549)
..+..+..++||+|.|... +...+.+-.+|+..+++.-... ..+|+++. .+-.++
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~------------------~Ll~aL 88 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLV------------------MLLKAL 88 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHH------------------HHHHHH
Confidence 3456677788888877643 3344555667777776653221 12222110 011223
Q ss_pred CCCCCCCEEEeecceeeeeCCcc----ccCCCCCCEEecccCcceec----cccc---------ccccc-cceeeCCCCc
Q 039925 127 GNPSAIQVMIFKENSLEGKFPNT----LSNLRSLFYDNINRNEFSGL----IPSF---------IFNIS-LKWNFLPENS 188 (549)
Q Consensus 127 ~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~----~p~~---------~~~l~-L~~L~l~~n~ 188 (549)
-++++|+..+||.|.+....|+. +.+-+.|.+|.|++|.+... +... ..+-+ |+.+....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 34455555555555554333332 23344555555555543211 1100 11223 5555555555
Q ss_pred CcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEcccccccccc-----ChhhhhccccCccEEEcCCCcccc
Q 039925 189 FTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTI-----TLGIKKLIFVNLYALTMVKNKLSG 263 (549)
Q Consensus 189 l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~-----~~~~~~l~~~~L~~L~L~~n~l~~ 263 (549)
+. ..|...... .+.....|+.+.+..|.|.... -..+..+ .+|+.|||.+|-++-
T Consensus 169 le-ngs~~~~a~-----------------~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~--~~LevLDlqDNtft~ 228 (388)
T COG5238 169 LE-NGSKELSAA-----------------LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS--HSLEVLDLQDNTFTL 228 (388)
T ss_pred hc-cCcHHHHHH-----------------HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHh--Ccceeeeccccchhh
Confidence 54 222221100 0011124566666666554221 1122333 667777777776653
Q ss_pred cCCCcCccccCCccccCeeeccCccccccCCcc----c--cCCCCCCEEEccCCcccc
Q 039925 264 PIPHHIASSLGNLTLLTYLALDNNKLQGNLPSS----L--GYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 264 ~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~----l--~~l~~L~~L~Ls~N~l~~ 315 (549)
.....+...+...+.|++|.+.+|-++..-..+ | ...|+|..|...+|...+
T Consensus 229 ~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 229 EGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 222222333444566777777777776332221 2 235677777777777654
|
|
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.4e-06 Score=77.29 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=65.6
Q ss_pred cccccCcCCCccccCceecEEEEEeC-CCce--------------------------eEEEecc-------ccCCCceEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG-EKWT--------------------------AGYSEGT-------DFKGIDFKA 437 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--------------------------~g~~~~~-------~~~~~~~~~ 437 (549)
...++|+..++||+|.||.|..++-+ .++. +..|... .+...+..+
T Consensus 165 vTm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlC 244 (516)
T KOG0690|consen 165 VTMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLC 244 (516)
T ss_pred eccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEE
Confidence 46789999999999999999988754 2322 0001100 012267899
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.||||+.||.|+-+|...+ .++..+..-+-..|..||.|||
T Consensus 245 FVMeyanGGeLf~HLsrer------~FsE~RtRFYGaEIvsAL~YLH 285 (516)
T KOG0690|consen 245 FVMEYANGGELFFHLSRER------VFSEDRTRFYGAEIVSALGYLH 285 (516)
T ss_pred EEEEEccCceEeeehhhhh------cccchhhhhhhHHHHHHhhhhh
Confidence 9999999999999998654 6777776678899999999999
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.9e-06 Score=56.03 Aligned_cols=37 Identities=32% Similarity=0.468 Sum_probs=22.8
Q ss_pred CCCCEEEccCCcceecCCccccCCCCCCEeeccccccc
Q 039925 57 GYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFS 94 (549)
Q Consensus 57 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 94 (549)
++|++|++++|+|+ .+|..|++|++|++|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666666666666 45555666666666666666666
|
... |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.5e-06 Score=82.82 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=64.4
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce----------------------------------------eEEEeccccCCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------------~g~~~~~~~~~~ 433 (549)
..+|....+||+|+||.|..|..++... ...+.. -
T Consensus 348 ~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQT-----m 422 (683)
T KOG0696|consen 348 ATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQT-----M 422 (683)
T ss_pred ecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhh-----h
Confidence 3478888899999999999998765443 111222 4
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..+.||||+.+|+|--.++..+ .+.....+-+|..||-||-|||
T Consensus 423 DRLyFVMEyvnGGDLMyhiQQ~G------kFKEp~AvFYAaEiaigLFFLh 467 (683)
T KOG0696|consen 423 DRLYFVMEYVNGGDLMYHIQQVG------KFKEPVAVFYAAEIAIGLFFLH 467 (683)
T ss_pred hheeeEEEEecCchhhhHHHHhc------ccCCchhhhhhHHHHHHhhhhh
Confidence 67899999999999998888654 6788888899999999999999
|
|
| >KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=77.09 Aligned_cols=87 Identities=18% Similarity=0.323 Sum_probs=59.5
Q ss_pred ccCcCCCccccCceecEEEEEeC-CCce--------------------------------------eEEEeccc-cCCCc
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILG-EKWT--------------------------------------AGYSEGTD-FKGID 434 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--------------------------------------~g~~~~~~-~~~~~ 434 (549)
..|...+.||+|.||+||+|+.. +|.. .+++.... +....
T Consensus 11 ~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~ 90 (323)
T KOG0594|consen 11 FDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIG 90 (323)
T ss_pred HHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccc
Confidence 34566667999999999999853 3322 22233210 11223
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++|+||+.. +|.+++...... ...++......+..|+.+|++|||
T Consensus 91 ~l~lvfe~~d~-DL~~ymd~~~~~--~~g~~~~~ik~~m~Qll~gl~~~H 137 (323)
T KOG0594|consen 91 KLYLVFEFLDR-DLKKYMDSLPKK--PQGLPPRLIKSFMRQLLRGLAFLH 137 (323)
T ss_pred eEEEEEEeecc-cHHHHHHhcccc--ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999875 888888765411 034555778889999999999999
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.8e-05 Score=79.04 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=31.1
Q ss_pred ccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeeccc
Q 039925 53 VGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICET 116 (549)
Q Consensus 53 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n 116 (549)
+..+.+++.|++++|.++ .+|. + -.+|+.|.+++|.--..+|+.+. .+| ++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nL-e~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGL-EKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhh-hheEccCc
Confidence 445577777888777776 5552 1 23577777766432224454331 344 55555554
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.1e-05 Score=81.05 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=62.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce---------------------------------eEEEeccccCCCceEEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..++.|.....+|.|+|++|-++....... .+++.+ ....++
T Consensus 319 ~~~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~~~~~e~~~~~~~~~h~niv~~~~v~~~-----~~~~~~ 393 (612)
T KOG0603|consen 319 PFTESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRADDNQDEIPISLLVRDHPNIVKSHDVYED-----GKEIYL 393 (612)
T ss_pred CcchhhccccccCCCCccceeeeeccccccchhheeccccccccccccchhhhhcCCCcceeecceecC-----Cceeee
Confidence 356777777789999999999987643221 344544 678899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||++.+|-+.+-+.... .+. ..+..|+.+++.|+.|||
T Consensus 394 v~e~l~g~ell~ri~~~~------~~~-~e~~~w~~~lv~Av~~LH 432 (612)
T KOG0603|consen 394 VMELLDGGELLRRIRSKP------EFC-SEASQWAAELVSAVDYLH 432 (612)
T ss_pred eehhccccHHHHHHHhcc------hhH-HHHHHHHHHHHHHHHHHH
Confidence 999999998888877554 233 566779999999999999
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.3e-05 Score=53.51 Aligned_cols=36 Identities=36% Similarity=0.528 Sum_probs=19.4
Q ss_pred CCCEeecccccccccCCcccccccCccceeeecccccc
Q 039925 82 RLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLS 119 (549)
Q Consensus 82 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~ 119 (549)
+|++|++++|+|+ .+|..+.++++| +.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L-~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNL-ETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTS-SEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCC-CEEEecCCCCC
Confidence 4566666666665 455555555555 55555555554
|
... |
| >KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.1e-06 Score=80.04 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=41.4
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..+-|.|||+|.+|+-||+.++ .++.+....|+.||+.||.||.
T Consensus 540 tdsFCTVLEYceGNDLDFYLKQhk------lmSEKEARSIiMQiVnAL~YLN 585 (775)
T KOG1151|consen 540 TDSFCTVLEYCEGNDLDFYLKQHK------LMSEKEARSIIMQIVNALKYLN 585 (775)
T ss_pred cccceeeeeecCCCchhHHHHhhh------hhhHHHHHHHHHHHHHHHHHHh
Confidence 567789999999999999999765 6788888999999999999997
|
|
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00016 Score=77.36 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=53.4
Q ss_pred cCcCCCccccCceecEEEEEeCCCce------------------------------------------eEEEeccccCCC
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKWT------------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------------------------~g~~~~~~~~~~ 433 (549)
.|...+.||+|+||.||+|.+.+..+ ..++.. .
T Consensus 334 ~~~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~-----~ 408 (535)
T PRK09605 334 RKIPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVD-----P 408 (535)
T ss_pred ccCccceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEe-----C
Confidence 34567889999999999988765433 111222 3
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++++|.+++. .+..++.++++++.|||
T Consensus 409 ~~~~lv~E~~~g~~L~~~l~--------------~~~~~~~~i~~~L~~lH 445 (535)
T PRK09605 409 EEKTIVMEYIGGKDLKDVLE--------------GNPELVRKVGEIVAKLH 445 (535)
T ss_pred CCCEEEEEecCCCcHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 45689999999999988764 24678999999999999
|
|
| >KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.1e-05 Score=72.63 Aligned_cols=86 Identities=15% Similarity=0.246 Sum_probs=65.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce----------------------eEEEecc----------ccCCCceEEEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------AGYSEGT----------DFKGIDFKAVV 439 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------~g~~~~~----------~~~~~~~~~lv 439 (549)
.-.+.|+..+.+|+|.||.+-.++.++... +++..+. .+...+....+
T Consensus 21 ~l~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~ 100 (378)
T KOG1345|consen 21 DLEDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFV 100 (378)
T ss_pred chhhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEe
Confidence 345678899999999999999999876553 2222111 01224678899
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||+|.|+|.+-+...+ +......+++.|++.|++|+|
T Consensus 101 qE~aP~gdL~snv~~~G-------igE~~~K~v~~ql~SAi~fMH 138 (378)
T KOG1345|consen 101 QEFAPRGDLRSNVEAAG-------IGEANTKKVFAQLLSAIEFMH 138 (378)
T ss_pred eccCccchhhhhcCccc-------ccHHHHHHHHHHHHHHHHHhh
Confidence 99999999999887543 666777889999999999999
|
|
| >KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.3e-05 Score=75.32 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=62.2
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cc-e------------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KW-T------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~-~------------------------------------~g~~~~~~~~~~ 433 (549)
.....|...+.||+|+||.|..++... +. | ...........-
T Consensus 19 ~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f 98 (359)
T KOG0660|consen 19 EIPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKF 98 (359)
T ss_pred eccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccccc
Confidence 555666667889999999999998643 32 2 111111111123
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...|+|+|+| .-+|...++... .++-.+..-+..|+.+|+.|+|
T Consensus 99 ~DvYiV~elM-etDL~~iik~~~------~L~d~H~q~f~YQiLrgLKyiH 142 (359)
T KOG0660|consen 99 NDVYLVFELM-ETDLHQIIKSQQ------DLTDDHAQYFLYQILRGLKYIH 142 (359)
T ss_pred ceeEEehhHH-hhHHHHHHHcCc------cccHHHHHHHHHHHHHhcchhh
Confidence 5689999999 459999998654 5888888889999999999999
|
|
| >PRK14879 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.9e-05 Score=70.80 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=53.8
Q ss_pred CccccCceecEEEEEeCCCce------------------------------------------eEEEeccccCCCceEEE
Q 039925 401 NMIGQGSFGSVYKGILGEKWT------------------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~~------------------------------------------~g~~~~~~~~~~~~~~l 438 (549)
+.||+|++|.||+|.+.+..+ ..++.. ....++
T Consensus 2 ~~l~~G~~~~vy~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~-----~~~~~l 76 (211)
T PRK14879 2 KLIKRGAEAEIYLGDFLGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVD-----PENFII 76 (211)
T ss_pred cccccCceEEEEEEeeCCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEe-----CCCCEE
Confidence 469999999999998755443 122222 445689
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++++|.+++.... + .+..++.+++.+|.++|
T Consensus 77 v~e~~~G~~L~~~~~~~~---------~-~~~~i~~~i~~~l~~lH 112 (211)
T PRK14879 77 VMEYIEGEPLKDLINSNG---------M-EELELSREIGRLVGKLH 112 (211)
T ss_pred EEEEeCCcCHHHHHHhcc---------H-HHHHHHHHHHHHHHHHH
Confidence 999999999999986432 2 77889999999999999
|
|
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=5e-05 Score=80.40 Aligned_cols=83 Identities=25% Similarity=0.324 Sum_probs=60.2
Q ss_pred cCcCCCccccCcee-cEEEEEeCCCce------------------------------eEEEeccccCCCceEEEEEeecC
Q 039925 396 EFSSSNMIGQGSFG-SVYKGILGEKWT------------------------------AGYSEGTDFKGIDFKAVVFDYMQ 444 (549)
Q Consensus 396 ~~~~~~~lG~G~~g-~Vy~~~~~~~~~------------------------------~g~~~~~~~~~~~~~~lv~ey~~ 444 (549)
-|...+++|+|+-| .||+|.+.+..| .-||.+.+ +.+.|+..|.|.
T Consensus 510 ~~~~~eilG~Gs~Gt~Vf~G~ye~R~VAVKrll~e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d---~qF~YIalELC~ 586 (903)
T KOG1027|consen 510 FFSPKEILGYGSNGTVVFRGVYEGREVAVKRLLEEFFDFAQREIQLLQESDEHPNVIRYYCSEQD---RQFLYIALELCA 586 (903)
T ss_pred eeccHHHcccCCCCcEEEEEeeCCceehHHHHhhHhHHHHHHHHHHHHhccCCCceEEEEeeccC---CceEEEEehHhh
Confidence 35677889999987 579999988777 45677644 789999999986
Q ss_pred CCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 445 NRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 445 ~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
- +|.+++..... ......--....+..|++.|++|||
T Consensus 587 ~-sL~dlie~~~~--d~~~~~~i~~~~~l~q~~~GlaHLH 623 (903)
T KOG1027|consen 587 C-SLQDLIESSGL--DVEMQSDIDPISVLSQIASGLAHLH 623 (903)
T ss_pred h-hHHHHHhcccc--chhhcccccHHHHHHHHHHHHHHHH
Confidence 5 99999986310 0011110223567889999999999
|
|
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.7e-05 Score=74.82 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=60.0
Q ss_pred CCccccCceecEEEEEe-CCCce------------------------------------eEEEeccccCCCceEEEEEee
Q 039925 400 SNMIGQGSFGSVYKGIL-GEKWT------------------------------------AGYSEGTDFKGIDFKAVVFDY 442 (549)
Q Consensus 400 ~~~lG~G~~g~Vy~~~~-~~~~~------------------------------------~g~~~~~~~~~~~~~~lv~ey 442 (549)
+++||+|+|+.|.-++- ..+.. +.++.+ +...|||||-
T Consensus 83 ~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEd-----d~~FYLVfEK 157 (463)
T KOG0607|consen 83 SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFED-----DTRFYLVFEK 157 (463)
T ss_pred HHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcc-----cceEEEEEec
Confidence 45799999999998873 33322 122333 6778999999
Q ss_pred cCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 443 MQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 443 ~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|.||+|...|+.++ .++....-++..+||.||.|||
T Consensus 158 m~GGplLshI~~~~------~F~E~EAs~vvkdia~aLdFlH 193 (463)
T KOG0607|consen 158 MRGGPLLSHIQKRK------HFNEREASRVVKDIASALDFLH 193 (463)
T ss_pred ccCchHHHHHHHhh------hccHHHHHHHHHHHHHHHHHHh
Confidence 99999999999765 6888888899999999999999
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.6e-06 Score=76.87 Aligned_cols=156 Identities=18% Similarity=0.096 Sum_probs=97.2
Q ss_pred ccccCCCCCCEEecccCcceecccccc----cccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCc
Q 039925 148 NTLSNLRSLFYDNINRNEFSGLIPSFI----FNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVS 222 (549)
Q Consensus 148 ~~~~~l~~L~~L~L~~n~l~~~~p~~~----~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~ 222 (549)
..+-+++.|+..+|++|.+....|..+ ...+ |.+|.|++|.+.-....-++..+..|-+ .....-.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~---------nKKaa~k 156 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAY---------NKKAADK 156 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHH---------HhhhccC
Confidence 456788999999999999987666543 4445 9999999998763222233311111100 0111223
Q ss_pred ccccEEEccccccccccC----hhhhhccccCccEEEcCCCcccccCCC-cCccccCCccccCeeeccCcccccc----C
Q 039925 223 TTATIIAMGGNQISGTIT----LGIKKLIFVNLYALTMVKNKLSGPIPH-HIASSLGNLTLLTYLALDNNKLQGN----L 293 (549)
Q Consensus 223 ~~L~~L~l~~n~l~~~~~----~~~~~l~~~~L~~L~L~~n~l~~~~p~-~l~~~l~~l~~L~~L~Ls~N~l~~~----~ 293 (549)
|.|+++....|++..... ..+..- .+|+.+.+..|.|.-..-. -+-..+..+.+|+.|||.+|-++-. +
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh--~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESH--ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhh--cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 578889999998874222 122333 5788999999988611000 0011234567889999999988732 3
Q ss_pred CccccCCCCCCEEEccCCccc
Q 039925 294 PSSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 294 p~~l~~l~~L~~L~Ls~N~l~ 314 (549)
...++..+.|+.|.+..|-++
T Consensus 235 a~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHhcccchhhhccccchhhc
Confidence 345566677888888877766
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=8.9e-05 Score=74.23 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=87.0
Q ss_pred ccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecc-eeeeeCCccccCCCC
Q 039925 77 VGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKEN-SLEGKFPNTLSNLRS 155 (549)
Q Consensus 77 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~ 155 (549)
+..+.+++.|++++|.++ .+|. + -.+| +.|.+++|.-...+|+.+ .++|+.|++++| .+. .+|. +
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sL-tsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNEL-TEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCC-cEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------c
Confidence 455788999999999888 6773 2 2346 999999865545667655 368999999998 554 5654 5
Q ss_pred CCEEecccCcceecccccccccc--cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEcccc
Q 039925 156 LFYDNINRNEFSGLIPSFIFNIS--LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGN 233 (549)
Q Consensus 156 L~~L~L~~n~l~~~~p~~~~~l~--L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n 233 (549)
|+.|++..+... .+..++ |+.|.+.+++.. .+..+.. .++++|++|++++|
T Consensus 114 Le~L~L~~n~~~-----~L~~LPssLk~L~I~~~n~~--~~~~lp~--------------------~LPsSLk~L~Is~c 166 (426)
T PRK15386 114 VRSLEIKGSATD-----SIKNVPNGLTSLSINSYNPE--NQARIDN--------------------LISPSLKTLSLTGC 166 (426)
T ss_pred cceEEeCCCCCc-----ccccCcchHhheeccccccc--ccccccc--------------------ccCCcccEEEecCC
Confidence 777888766543 133343 667776443211 0000000 12347888888877
Q ss_pred ccccccChhhhhccccCccEEEcCCCc
Q 039925 234 QISGTITLGIKKLIFVNLYALTMVKNK 260 (549)
Q Consensus 234 ~l~~~~~~~~~~l~~~~L~~L~L~~n~ 260 (549)
... ..|..+. .+|+.|+++.+.
T Consensus 167 ~~i-~LP~~LP----~SLk~L~ls~n~ 188 (426)
T PRK15386 167 SNI-ILPEKLP----ESLQSITLHIEQ 188 (426)
T ss_pred Ccc-cCccccc----ccCcEEEecccc
Confidence 754 2333332 578888887763
|
|
| >cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00011 Score=67.02 Aligned_cols=42 Identities=12% Similarity=0.224 Sum_probs=34.1
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHh-h
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYL-R 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yL-H 484 (549)
++||||++++++....... ..+++.....++.|++.+|+|+ |
T Consensus 93 ~iVmE~i~g~~l~~~~~~~------~~~~~~~~~~i~~qi~~~L~~l~H 135 (190)
T cd05147 93 VLVMEFIGDDGWAAPRLKD------APLSESKARELYLQVIQIMRILYQ 135 (190)
T ss_pred EEEEEEeCCCCCcchhhhc------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7999999998776553222 3578888899999999999999 6
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=8.2e-05 Score=74.59 Aligned_cols=79 Identities=10% Similarity=0.108 Sum_probs=52.5
Q ss_pred ccccCcCCCccccCceecEEEEEeCC--CceeEEEe---c-----cc------------------------cCCCceEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE--KWTAGYSE---G-----TD------------------------FKGIDFKAV 438 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~--~~~~g~~~---~-----~~------------------------~~~~~~~~l 438 (549)
..+.|...+.||+|+||+||+|.... +.+...-. . .+ +......++
T Consensus 16 ~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~~~~~L 95 (365)
T PRK09188 16 LSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLATGKDGL 95 (365)
T ss_pred ccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEcCCcEE
Confidence 45679999999999999999998642 33211100 0 00 001234689
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++++|... ... . ...++.++++|++|||
T Consensus 96 VmE~~~G~~L~~~-~~~------~------~~~~~~~i~~aL~~lH 128 (365)
T PRK09188 96 VRGWTEGVPLHLA-RPH------G------DPAWFRSAHRALRDLH 128 (365)
T ss_pred EEEccCCCCHHHh-Ccc------c------hHHHHHHHHHHHHHHH
Confidence 9999999999732 111 1 1357889999999999
|
|
| >TIGR03724 arch_bud32 Kae1-associated kinase Bud32 | Back alignment and domain information |
|---|
Probab=97.65 E-value=7.8e-05 Score=68.72 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=31.5
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++++|.+++.... . .++.+++++|.++|
T Consensus 70 ~~~~lv~e~~~g~~l~~~~~~~~-------~------~~~~~i~~~l~~lH 107 (199)
T TIGR03724 70 DNKTIVMEYIEGKPLKDVIEEGN-------D------ELLREIGRLVGKLH 107 (199)
T ss_pred CCCEEEEEEECCccHHHHHhhcH-------H------HHHHHHHHHHHHHH
Confidence 34589999999999999876432 1 78999999999999
|
Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine. |
| >smart00221 STYKc Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00011 Score=68.72 Aligned_cols=78 Identities=23% Similarity=0.287 Sum_probs=61.8
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceEEEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
|...+.||.|++|.||+|...+ +.. .+++.. ....+++
T Consensus 1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~-----~~~~~~v 75 (225)
T smart00221 1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFED-----PEPLYLV 75 (225)
T ss_pred CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeec-----CCceEEE
Confidence 4556789999999999999865 221 223332 4678899
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||+++++|.+++.... ..+++.....++.++++++.|||
T Consensus 76 ~e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lh 115 (225)
T smart00221 76 MEYCEGGDLFDYLRKKG-----GKLSEEEARFYLRQILEALEYLH 115 (225)
T ss_pred EeccCCCCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998643 11789999999999999999999
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
| >KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.63 E-value=2.8e-05 Score=73.61 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=65.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce-------------------------------------eEEEeccccCCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT-------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-------------------------------------~g~~~~~~~~~~~ 434 (549)
....+|+..++||+|+|+.|..+++..... .|. ..++..+.
T Consensus 247 l~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvgl--hscfqtes 324 (593)
T KOG0695|consen 247 LGLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGL--HSCFQTES 324 (593)
T ss_pred cccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEeh--hhhhcccc
Confidence 356789999999999999999998754332 121 11122367
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..+.|.||+++|+|--.++.+. .++.....-+...|+.||.|||
T Consensus 325 rlffvieyv~ggdlmfhmqrqr------klpeeharfys~ei~lal~flh 368 (593)
T KOG0695|consen 325 RLFFVIEYVNGGDLMFHMQRQR------KLPEEHARFYSAEICLALNFLH 368 (593)
T ss_pred eEEEEEEEecCcceeeehhhhh------cCcHHHhhhhhHHHHHHHHHHh
Confidence 8899999999999988887654 5777777778899999999999
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0001 Score=65.29 Aligned_cols=17 Identities=47% Similarity=0.565 Sum_probs=7.5
Q ss_pred cCCCCCCEeeccccccc
Q 039925 78 GRLFRLEYLLLANNHFS 94 (549)
Q Consensus 78 ~~l~~L~~L~Ls~n~l~ 94 (549)
..+++|.+|.|++|+|+
T Consensus 61 p~l~rL~tLll~nNrIt 77 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRIT 77 (233)
T ss_pred CCccccceEEecCCcce
Confidence 33444444444444444
|
|
| >KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.55 E-value=3e-05 Score=70.78 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=59.3
Q ss_pred cCcCCCccccCceecEEEEEeCCCce-------------eE-------------------------EEecc---ccCCCc
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKWT-------------AG-------------------------YSEGT---DFKGID 434 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~~-------------~g-------------------------~~~~~---~~~~~~ 434 (549)
.|..-..||+|.||.|++|+...+.. .| .|... ..+-+.
T Consensus 18 ~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~ 97 (376)
T KOG0669|consen 18 KYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRA 97 (376)
T ss_pred HHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccc
Confidence 34455679999999999998754332 01 12111 011134
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++|+++|+. +|.-.|.... .+++.....++..+...||.|+|
T Consensus 98 t~ylVf~~ceh-DLaGlLsn~~-----vr~sls~Ikk~Mk~Lm~GL~~iH 141 (376)
T KOG0669|consen 98 TFYLVFDFCEH-DLAGLLSNRK-----VRFSLSEIKKVMKGLMNGLYYIH 141 (376)
T ss_pred eeeeeHHHhhh-hHHHHhcCcc-----ccccHHHHHHHHHHHHHHHHHHH
Confidence 58999999987 7888887653 56888888999999999999999
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00014 Score=64.42 Aligned_cols=123 Identities=18% Similarity=0.257 Sum_probs=88.9
Q ss_pred CEEEccCCcceecCCcccc-CCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEee
Q 039925 60 RFINLVDNNFRGEIPEKVG-RLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFK 138 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 138 (549)
+.++|.+.++. .+-. ++ -+.+...+||++|.+. .+ +.|..++.| .+|.+.+|+|+.+-|.--..+++|+.|.|.
T Consensus 22 ~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL-~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRL-HTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccc-chhh-ccccccccceecccccchh-hc-ccCCCcccc-ceEEecCCcceeeccchhhhccccceEEec
Confidence 45666666554 2211 22 2356788999999987 33 347788999 999999999998777766667899999999
Q ss_pred cceeeeeCC--ccccCCCCCCEEecccCcceecc---cccccccc-cceeeCCCCc
Q 039925 139 ENSLEGKFP--NTLSNLRSLFYDNINRNEFSGLI---PSFIFNIS-LKWNFLPENS 188 (549)
Q Consensus 139 ~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~---p~~~~~l~-L~~L~l~~n~ 188 (549)
+|+|. .+. +-+..+++|++|.+-+|.++..- --.+..++ |+.||+++-.
T Consensus 97 nNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred Ccchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 99997 322 23677899999999999876321 12456677 9999987643
|
|
| >KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription] | Back alignment and domain information |
|---|
Probab=97.51 E-value=2.7e-05 Score=73.31 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=62.9
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce-----------------eEEEeccc---------------------cCCCce
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------AGYSEGTD---------------------FKGIDF 435 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------~g~~~~~~---------------------~~~~~~ 435 (549)
...|.....||+|.||.||||+-.++.- -|+..++. ......
T Consensus 23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~ 102 (438)
T KOG0666|consen 23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKK 102 (438)
T ss_pred HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCce
Confidence 3457777789999999999996532211 12211110 122467
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhhc
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLRV 485 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH~ 485 (549)
.++++||++. +|...|+.+.... ...++..+..+|.-||..|+.|||.
T Consensus 103 v~l~fdYAEh-DL~~II~fHr~~~-~~~lp~~mvKsilwQil~Gv~YLH~ 150 (438)
T KOG0666|consen 103 VWLLFDYAEH-DLWHIIKFHRASK-AKQLPRSMVKSILWQILDGVHYLHS 150 (438)
T ss_pred EEEEehhhhh-hHHHHHHHhccch-hccCCHHHHHHHHHHHHhhhHHHhh
Confidence 8999999887 8888888665222 2467778888999999999999993
|
|
| >cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0004 Score=63.49 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=32.3
Q ss_pred EEEEeecCCCCcccc-cccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDW-PYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~-l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||++++++... +.. ..++......++.++++++.|+|
T Consensus 93 ~lVmE~~~g~~~~~~~l~~-------~~~~~~~~~~i~~~l~~~l~~lH 134 (190)
T cd05145 93 VLVMEFIGDDGSPAPRLKD-------VPLEEEEAEELYEQVVEQMRRLY 134 (190)
T ss_pred EEEEEEecCCCchhhhhhh-------ccCCHHHHHHHHHHHHHHHHHHH
Confidence 799999999865433 332 24667778899999999999999
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro |
| >KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.39 E-value=1.2e-05 Score=74.10 Aligned_cols=128 Identities=16% Similarity=0.213 Sum_probs=80.6
Q ss_pred cccccCcCCCccccCceecEEEEEeC-CCce----------------eEE-------Ee--c------ccc------CCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG-EKWT----------------AGY-------SE--G------TDF------KGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~----------------~g~-------~~--~------~~~------~~~ 433 (549)
...-|....+-||.|+||+||-.+.+ +|+. .++ |. . .+. .--
T Consensus 50 qqq~Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfF 129 (449)
T KOG0664|consen 50 QQQQDIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFF 129 (449)
T ss_pred cccccCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHH
Confidence 33446778889999999999988863 4443 000 00 0 000 001
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhhccccCCcceeeeccCcccc----hHHHHH
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLRVKMALPEKVMEIVESSLLL----EIEDCL 509 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH~~~~~~~~~~~~~~~~~~~----~~~~~~ 509 (549)
.+.|+|+|.|. .+|.+.|... ..++-....-+..||.+||.||| ...++.+++.+ ...+|+
T Consensus 130 qEiYV~TELmQ-SDLHKIIVSP------Q~Ls~DHvKVFlYQILRGLKYLH--------sA~ILHRDIKPGNLLVNSNCv 194 (449)
T KOG0664|consen 130 QELYVLTELMQ-SDLHKIIVSP------QALTPDHVKVFVYQILRGLKYLH--------TANILHRDIKPGNLLVNSNCI 194 (449)
T ss_pred HHHHHHHHHHH-hhhhheeccC------CCCCcchhhhhHHHHHhhhHHHh--------hcchhhccCCCccEEeccCce
Confidence 23578888875 4888888753 46777777778899999999999 33344444432 236788
Q ss_pred HHHHHHHHHhccCCCCCCCCH-HHHHH
Q 039925 510 VSVLTIGILCSVESPSERMEK-PYIVS 535 (549)
Q Consensus 510 ~~l~~l~~~C~~~~P~~RP~~-~~v~~ 535 (549)
.++.|+++.-. ++|++|-.| .||+.
T Consensus 195 LKICDFGLARv-ee~d~~~hMTqEVVT 220 (449)
T KOG0664|consen 195 LKICDFGLART-WDQRDRLNMTHEVVT 220 (449)
T ss_pred EEecccccccc-cchhhhhhhHHHHHH
Confidence 88888887665 345555544 45543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00017 Score=78.37 Aligned_cols=130 Identities=21% Similarity=0.186 Sum_probs=84.1
Q ss_pred cceeeCCCCcC-cccCchhhhhcCCCCcEeeecc-cccccc---cccCcccccEEEccccccccccChhhhhccccCccE
Q 039925 179 LKWNFLPENSF-TGNLPLEIGVTLPKGRNYYILL-LAQKLY---WSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYA 253 (549)
Q Consensus 179 L~~L~l~~n~l-~~~~p~~~~~~l~~L~~L~l~~-~~~~l~---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~ 253 (549)
|++|++++... ....|..++..+|+|+.|.+.+ .+..-. .....++|..||+|+.+++.. ..++.+ ++|+.
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L--knLq~ 199 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRL--KNLQV 199 (699)
T ss_pred hhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcc--ccHHH
Confidence 66666666543 2234556666777888777777 222211 123346888889998888754 677888 88888
Q ss_pred EEcCCCcccccCCCcCccccCCccccCeeeccCccccccC------CccccCCCCCCEEEccCCcccc
Q 039925 254 LTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNL------PSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 254 L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~------p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
|.+.+=.+.... . -..+.+|++|+.||+|........ -+.-..+|+|+.||.|++.++.
T Consensus 200 L~mrnLe~e~~~--~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQ--D-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchh--h-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 888876665211 0 134667889999999877655211 1223458899999999887764
|
|
| >KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0003 Score=70.88 Aligned_cols=81 Identities=21% Similarity=0.281 Sum_probs=55.6
Q ss_pred CCCccccCceecEEEEEeCC-Cc-e------------------------------eE-EEeccccCCCceEEEEEeecCC
Q 039925 399 SSNMIGQGSFGSVYKGILGE-KW-T------------------------------AG-YSEGTDFKGIDFKAVVFDYMQN 445 (549)
Q Consensus 399 ~~~~lG~G~~g~Vy~~~~~~-~~-~------------------------------~g-~~~~~~~~~~~~~~lv~ey~~~ 445 (549)
.+++||.|-||.||-|..+. |+ | -| ++.+--+..++..++|||-+.+
T Consensus 568 ~devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~G 647 (888)
T KOG4236|consen 568 ADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHG 647 (888)
T ss_pred hHhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcc
Confidence 35689999999999998753 22 2 01 1111111227889999999865
Q ss_pred CCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 446 RSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 446 GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
-=|+-.|..++ ++++.+...-+..||..||.|||
T Consensus 648 DMLEMILSsEk-----gRL~er~TkFlvtQIL~ALr~LH 681 (888)
T KOG4236|consen 648 DMLEMILSSEK-----GRLPERITKFLVTQILVALRYLH 681 (888)
T ss_pred hHHHHHHHhhc-----ccchHHHHHHHHHHHHHHHHHhh
Confidence 55555555544 56777776678899999999999
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0013 Score=55.71 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=57.3
Q ss_pred cccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCC
Q 039925 52 HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSA 131 (549)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~ 131 (549)
+|.++++|+.+.+.. .+...-...|..+++|+.+.+..+ +...-...|..++.+ +.+.+.. .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l-~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSL-ESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT--EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccc-ccccccc-ccccccccccccccc
Confidence 677778888888874 466444557788878888888775 553333456667677 7888765 444344556777777
Q ss_pred CCEEEeecceeeeeCCccccCCCCCCEEeccc
Q 039925 132 IQVMIFKENSLEGKFPNTLSNLRSLFYDNINR 163 (549)
Q Consensus 132 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 163 (549)
|+.+++..+ +...-...|.+. +|+.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 887777655 443445556665 777776654
|
|
| >KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00011 Score=63.58 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=56.9
Q ss_pred cCcCCCccccCceecEEEEEeC-CCce-------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILG-EKWT-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~-~~~~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+|+..+.||+|.||+|+||+-+ .+.+ +.+-.+ ....-
T Consensus 3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhs-----dkklt 77 (292)
T KOG0662|consen 3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-----DKKLT 77 (292)
T ss_pred chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhcc-----CceeE
Confidence 4666778999999999999843 3333 111112 45677
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|+|||.. +|.++...-. +.++.....+++.|..+|+.|+|
T Consensus 78 lvfe~cdq-dlkkyfdsln-----g~~d~~~~rsfmlqllrgl~fch 118 (292)
T KOG0662|consen 78 LVFEFCDQ-DLKKYFDSLN-----GDLDPEIVRSFMLQLLRGLGFCH 118 (292)
T ss_pred EeHHHhhH-HHHHHHHhcC-----CcCCHHHHHHHHHHHHhhhhhhh
Confidence 99999865 6666655433 56788888899999999999999
|
|
| >KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0004 Score=71.59 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=61.8
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCCCc
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~~~ 434 (549)
...|...+.||-|+||.|-.+..-|... +..+.+ .+
T Consensus 628 KSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQD-----kd 702 (1034)
T KOG0608|consen 628 KSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQD-----KD 702 (1034)
T ss_pred ccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEecc-----CC
Confidence 3457788889999999999987644322 222334 78
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+|+||||++||++-.+|-..+ .|......-++..++.|++|.|
T Consensus 703 nLYFVMdYIPGGDmMSLLIrmg------IFeE~LARFYIAEltcAiesVH 746 (1034)
T KOG0608|consen 703 NLYFVMDYIPGGDMMSLLIRMG------IFEEDLARFYIAELTCAIESVH 746 (1034)
T ss_pred ceEEEEeccCCccHHHHHHHhc------cCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999987654 5777666667788999999999
|
|
| >KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00024 Score=78.52 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=65.6
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce-------------eEEEecc-----------------ccCCCceEEEEEeec
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT-------------AGYSEGT-----------------DFKGIDFKAVVFDYM 443 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-------------~g~~~~~-----------------~~~~~~~~~lv~ey~ 443 (549)
.+.|...+.+|+|+||.||+|.-.++.. +..|... .+-..+..++|+||.
T Consensus 697 ~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ey~ 776 (974)
T KOG1166|consen 697 GEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWEFYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSEYS 776 (974)
T ss_pred ceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCceeeeehHHHHHhhchhhhcchHHHHHHHccCCcceeeeecc
Confidence 4457788899999999999999877665 1111100 011134568999999
Q ss_pred CCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 444 QNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 444 ~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+.|+|.+++... +..+|.-.+.++.++++=+++||
T Consensus 777 ~~Gtlld~~N~~------~~m~e~lv~~~~~qml~ive~lH 811 (974)
T KOG1166|consen 777 PYGTLLDLINTN------KVMDEYLVMFFSCQMLRIVEHLH 811 (974)
T ss_pred ccccHHHhhccC------CCCCchhhhHHHHHHHHHHHHHH
Confidence 999999999843 47899999999999999999999
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00015 Score=67.10 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=35.7
Q ss_pred cccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccc--cccccCCcccccccCccceeeecccccc
Q 039925 52 HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANN--HFSGKIPANLSHCSNLLTKLFICETHLS 119 (549)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~~L~Ls~n~l~ 119 (549)
....+..|+.|++.+..++. + ..|-.|++|+.|.+|.| ++.+.++.....+++| ++|++++|+|.
T Consensus 38 l~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l-~~l~ls~Nki~ 104 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNL-KVLNLSGNKIK 104 (260)
T ss_pred ccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCce-eEEeecCCccc
Confidence 33444555666666655552 2 13445666777777777 4444444444445566 66666666554
|
|
| >smart00090 RIO RIO-like kinase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.001 Score=63.00 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=33.7
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||++++++..+..... .+...+...++.++++++.|||
T Consensus 123 ~~lV~E~~~g~~L~~~~~~~~------~~~~~~~~~i~~qi~~~l~~LH 165 (237)
T smart00090 123 NVLVMEFIGGDGLPAPRLKDV------EPEEEEEFELYDDILEEMRKLY 165 (237)
T ss_pred ceEEEEEecCCcccccccccC------CcchHHHHHHHHHHHHHHHHHH
Confidence 479999999999887653222 3455556789999999999999
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00023 Score=77.37 Aligned_cols=152 Identities=15% Similarity=0.145 Sum_probs=81.8
Q ss_pred CCCCEEEeecceeee-eCCcccc-CCCCCCEEecccCccee-cccccccccc-cceeeCCCCcCcccCchhhhhcCCCCc
Q 039925 130 SAIQVMIFKENSLEG-KFPNTLS-NLRSLFYDNINRNEFSG-LIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGR 205 (549)
Q Consensus 130 ~~L~~L~L~~n~l~~-~~p~~~~-~l~~L~~L~L~~n~l~~-~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~ 205 (549)
.+|++|++++...-. .-|..++ -+|+|++|.+.+-.+.. .......+++ |..||+|+.+++ .+ ..+. .+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS-~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGIS-RLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHh-ccccHH
Confidence 678888887754431 1222233 36788888887755532 2223344566 777777777776 22 3343 566666
Q ss_pred EeeecccccccccccCcccccEEEcccccccc-ccChhhhhccccCccEEEcCCCcccccC--CCcCccccCCccccCee
Q 039925 206 NYYILLLAQKLYWSDVSTTATIIAMGGNQISG-TITLGIKKLIFVNLYALTMVKNKLSGPI--PHHIASSLGNLTLLTYL 282 (549)
Q Consensus 206 ~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~~~L~~L~L~~n~l~~~~--p~~l~~~l~~l~~L~~L 282 (549)
.|.+.+ =.+.. ..-..+..+ ++|+.||+|..+..... ....-+.-..+|.|+.|
T Consensus 199 ~L~mrn---------------------Le~e~~~~l~~LF~L--~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfL 255 (699)
T KOG3665|consen 199 VLSMRN---------------------LEFESYQDLIDLFNL--KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFL 255 (699)
T ss_pred HHhccC---------------------CCCCchhhHHHHhcc--cCCCeeeccccccccchHHHHHHHHhcccCccccEE
Confidence 554442 22221 111245556 77777777766544211 00111233457888888
Q ss_pred eccCccccccCCccc-cCCCCCCEEE
Q 039925 283 ALDNNKLQGNLPSSL-GYYQNLMELS 307 (549)
Q Consensus 283 ~Ls~N~l~~~~p~~l-~~l~~L~~L~ 307 (549)
|.|++.+...+-+.+ ..-++|+.+.
T Consensus 256 DcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 256 DCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred ecCCcchhHHHHHHHHHhCccHhhhh
Confidence 888888775443322 2334444443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0023 Score=54.17 Aligned_cols=123 Identities=19% Similarity=0.142 Sum_probs=67.3
Q ss_pred ccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCC
Q 039925 75 EKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLR 154 (549)
Q Consensus 75 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 154 (549)
..|.++++|+.+.+.. .+...-...|..++++ +.+.+..+ +.......|.++++|+.+.+.. .+...-...|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l-~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSL-KSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT--SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccc-cccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 4688888999999885 5664445567888888 99999875 6655666788888899999976 44435556777899
Q ss_pred CCCEEecccCcceecccccccccccceeeCCCCcCcccCchhhhhcCCCC
Q 039925 155 SLFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKG 204 (549)
Q Consensus 155 ~L~~L~L~~n~l~~~~p~~~~~l~L~~L~l~~n~l~~~~p~~~~~~l~~L 204 (549)
+|+.+.+..+ +.......|.+..|+.+.+.. .+. .++...+.+.++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNCNLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT-T--EEE-TT-B-S-S----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCCCceEEEECC-Ccc-EECCccccccccC
Confidence 9999998765 554455566665588887765 333 3454444344443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0004 Score=78.23 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=37.9
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..+.++||+ .++|+++|.... ..+++.+.+.++.||++||+|||
T Consensus 53 ~~~~~~~e~~-~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~al~~lH 97 (793)
T PLN00181 53 DSIVRALECE-DVSLRQWLDNPD-----RSVDAFECFHVFRQIVEIVNAAH 97 (793)
T ss_pred chhhhhhccC-CccHHHHHhccc-----ccccHHHHHHHHHHHHHHHHHHH
Confidence 4567788987 569999997532 46899999999999999999999
|
|
| >KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0012 Score=67.42 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=64.3
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce-----------------------------------------------eEEEe
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------------------AGYSE 426 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------------------~g~~~ 426 (549)
-.+|+....+|.|+||.|+.|.++.... +.++.
T Consensus 560 ~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFE 639 (772)
T KOG1152|consen 560 FSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFE 639 (772)
T ss_pred cccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheee
Confidence 3467888899999999999999865432 23444
Q ss_pred ccccCCCceEEEEEeec-CCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 427 GTDFKGIDFKAVVFDYM-QNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 427 ~~~~~~~~~~~lv~ey~-~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+ .++.+|+||-- ++-+|.++|..+. .++.....-|..||+.|.++||
T Consensus 640 d-----dd~yyl~te~hg~gIDLFd~IE~kp------~m~E~eAk~IFkQV~agi~hlh 687 (772)
T KOG1152|consen 640 D-----DDYYYLETEVHGEGIDLFDFIEFKP------RMDEPEAKLIFKQVVAGIKHLH 687 (772)
T ss_pred c-----CCeeEEEecCCCCCcchhhhhhccC------ccchHHHHHHHHHHHhcccccc
Confidence 4 78899999864 4568999998664 6888888889999999999999
|
|
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00022 Score=66.15 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=50.6
Q ss_pred cCcCCCccccCceecEEEEEeCCCc-e-------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKW-T-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~-~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+......||.|..|.|++++.+... + +|++.. .....
T Consensus 93 dl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~-----n~dV~ 167 (391)
T KOG0983|consen 93 DLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFIT-----NTDVF 167 (391)
T ss_pred HhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEee-----CchHH
Confidence 4444556899999999999986532 2 344443 33444
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+-||.|.. -++++++.-+ ++++..-.-++...+..||.||-
T Consensus 168 IcMelMs~-C~ekLlkrik-----~piPE~ilGk~tva~v~AL~YLK 208 (391)
T KOG0983|consen 168 ICMELMST-CAEKLLKRIK-----GPIPERILGKMTVAIVKALYYLK 208 (391)
T ss_pred HHHHHHHH-HHHHHHHHhc-----CCchHHhhhhhHHHHHHHHHHHH
Confidence 55665542 2233333322 45777777889999999999995
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.00066 Score=62.88 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=59.7
Q ss_pred CCccccCCCCCCEeecccccccccCCcccccccCccceeeeccc--ccccccccccCCCCCCCEEEeecceeeeeCCcc-
Q 039925 73 IPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICET--HLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNT- 149 (549)
Q Consensus 73 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~- 149 (549)
+..-.-.+..|+.|.+.+..++ .+ ..+..+++| +.|.++.| ++.+.++-....+++|++|++++|+|.. +.+
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~L-kkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl 109 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKL-KKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL 109 (260)
T ss_pred cccccccccchhhhhhhcccee-ec-ccCCCcchh-hhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc
Confidence 4444555667777777777766 22 235567788 88888888 5555555555566888888888888862 333
Q ss_pred --ccCCCCCCEEecccCccee
Q 039925 150 --LSNLRSLFYDNINRNEFSG 168 (549)
Q Consensus 150 --~~~l~~L~~L~L~~n~l~~ 168 (549)
+..+.+|..|++.+|..+.
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcchhhhhcccCCccc
Confidence 3445667777777776553
|
|
| >PRK10345 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0036 Score=57.95 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=29.1
Q ss_pred EEEEee--cCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHH-HHhh
Q 039925 437 AVVFDY--MQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAI-EYLR 484 (549)
Q Consensus 437 ~lv~ey--~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl-~yLH 484 (549)
.+|+|| +++|+|.+++... .++.. ..++.++..++ +|||
T Consensus 81 ~~I~e~~G~~~~tL~~~l~~~-------~~~e~--~~~~~~~L~~l~~yLh 122 (210)
T PRK10345 81 DVIADFDGKPSITLTEFAEQC-------RYEED--VAQLRQLLKKLKRYLL 122 (210)
T ss_pred EEEecCCCCcchhHHHHHHcc-------cccHh--HHHHHHHHHHHHHHHH
Confidence 378999 6689999999653 24444 35677888777 9999
|
|
| >KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.002 Score=64.67 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=64.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce----------------------------------------eEEEecc--cc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------------AGYSEGT--DF 430 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------------~g~~~~~--~~ 430 (549)
..+.|-..+.||=|.|.+||.+....+.. +...... ..
T Consensus 76 ~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsG 155 (590)
T KOG1290|consen 76 NGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSG 155 (590)
T ss_pred cCceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecC
Confidence 34567778899999999999998765542 1111111 12
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+++.++++|+||. |-+|.++|.... -+.++.....+||+||..||.|||
T Consensus 156 pNG~HVCMVfEvL-GdnLLklI~~s~----YrGlpl~~VK~I~~qvL~GLdYLH 204 (590)
T KOG1290|consen 156 PNGQHVCMVFEVL-GDNLLKLIKYSN----YRGLPLSCVKEICRQVLTGLDYLH 204 (590)
T ss_pred CCCcEEEEEehhh-hhHHHHHHHHhC----CCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3457889999996 558889988654 345888889999999999999999
|
|
| >cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0051 Score=56.53 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=29.8
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++++|.+.... .....++.++++++.++|
T Consensus 105 ~~~lv~e~~~g~~L~~~~~~------------~~~~~~~~~i~~~l~~lh 142 (198)
T cd05144 105 RHAVVMEYIDGVELYRVRVL------------EDPEEVLDEILEEIVKAY 142 (198)
T ss_pred CceEEEEEeCCcchhhcccc------------ccHHHHHHHHHHHHHHHH
Confidence 45899999999998776431 123568899999999999
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.00019 Score=66.70 Aligned_cols=95 Identities=18% Similarity=0.183 Sum_probs=61.3
Q ss_pred ceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceeccc-ccccccc-cceeeCCC
Q 039925 109 TKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIP-SFIFNIS-LKWNFLPE 186 (549)
Q Consensus 109 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~-L~~L~l~~ 186 (549)
+.|+..+|.|.++ .....|+.|++|.|+-|+|+..- .+..+++|++|+|..|.|...-. ..+.+++ |+.|+|..
T Consensus 22 kKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 22 KKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 6667777766543 23456778888888888887432 36778888888888887763221 3456777 88888888
Q ss_pred CcCcccCchhhh----hcCCCCcEe
Q 039925 187 NSFTGNLPLEIG----VTLPKGRNY 207 (549)
Q Consensus 187 n~l~~~~p~~~~----~~l~~L~~L 207 (549)
|.-.+..+.... ..||+|+.|
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhc
Confidence 877665554322 245555544
|
|
| >KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.00038 Score=64.34 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=56.8
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCce
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~ 435 (549)
.++......||.|+||+|+|-..+. |.+ +|++.. ++.
T Consensus 63 ~~~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~-----EGd 137 (361)
T KOG1006|consen 63 SDNLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFS-----EGD 137 (361)
T ss_pred cchHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhc-----CCc
Confidence 3455666789999999999876543 332 566666 677
Q ss_pred EEEEEeecCCCCcc---cccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLE---DWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~---~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++-||.|.- |+. ++.+... ...++..-.-+|+.-..+||.||-
T Consensus 138 cWiCMELMd~-SlDklYk~vy~vq----~~~ipE~Ilg~ItvatV~AL~yLK 184 (361)
T KOG1006|consen 138 CWICMELMDI-SLDKLYKRVYSVQ----KSRIPENILGHITVATVDALDYLK 184 (361)
T ss_pred eeeeHHHHhh-hHHHHHHHHHHHH----hccCcHhhhhheeeeehhHHHHHH
Confidence 8889999864 443 3333322 245777777788888899999995
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.00021 Score=66.47 Aligned_cols=100 Identities=21% Similarity=0.316 Sum_probs=63.7
Q ss_pred CCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeeccccccccc-ccccCCCCCCCE
Q 039925 56 FGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQL-LDFIGNPSAIQV 134 (549)
Q Consensus 56 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 134 (549)
+.+.+.|+..++.+++ +. -..+++.|++|.||-|+|+. + ..+..|++| +.|+|..|.|...- -..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~D-Is-ic~kMp~lEVLsLSvNkIss-L-~pl~rCtrL-kElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-IS-ICEKMPLLEVLSLSVNKISS-L-APLQRCTRL-KELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccH-HH-HHHhcccceeEEeecccccc-c-hhHHHHHHH-HHHHHHhcccccHHHHHHHhcCchhhh
Confidence 4566777888887773 21 23567888888888888873 2 236777888 88888888776431 123566777777
Q ss_pred EEeecceeeeeCCc-----cccCCCCCCEEe
Q 039925 135 MIFKENSLEGKFPN-----TLSNLRSLFYDN 160 (549)
Q Consensus 135 L~L~~n~l~~~~p~-----~~~~l~~L~~L~ 160 (549)
|.|..|.-.+.-+. .+.-|++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777766654432 233455555554
|
|
| >KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0038 Score=61.58 Aligned_cols=84 Identities=30% Similarity=0.370 Sum_probs=62.5
Q ss_pred cccccCcCCCccccCceecEEEEEeCC---Cce-------------------------eEEEe-----ccccCCCceEEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE---KWT-------------------------AGYSE-----GTDFKGIDFKAV 438 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~---~~~-------------------------~g~~~-----~~~~~~~~~~~l 438 (549)
...+.|...+.||.|.|++||+++... ... .|... .-....++...+
T Consensus 33 ~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~i 112 (418)
T KOG1167|consen 33 FISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVAI 112 (418)
T ss_pred hhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccchhhhcchhhhccCCeeEE
Confidence 345567888999999999999998754 111 11100 001234788999
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+||++.-...++... ++......+.+....||.|+|
T Consensus 113 vlp~~~H~~f~~l~~~---------l~~~~i~~Yl~~ll~Al~~~h 149 (418)
T KOG1167|consen 113 VLPYFEHDRFRDLYRS---------LSLAEIRWYLRNLLKALAHLH 149 (418)
T ss_pred EecccCccCHHHHHhc---------CCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999888763 567777889999999999999
|
|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0028 Score=63.94 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=65.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce----------------------------eEEEecc------ccCCCceEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------AGYSEGT------DFKGIDFKA 437 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------~g~~~~~------~~~~~~~~~ 437 (549)
....++.....||-||||.|-......... ...+... .++...+.|
T Consensus 417 v~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvY 496 (732)
T KOG0614|consen 417 VKLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVY 496 (732)
T ss_pred cchhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhh
Confidence 445566667779999999999988765542 1112110 134467889
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+.||-|-||.+-..|++++ .++-....-++..|.+|++|||
T Consensus 497 mLmEaClGGElWTiLrdRg------~Fdd~tarF~~acv~EAfeYLH 537 (732)
T KOG0614|consen 497 MLMEACLGGELWTILRDRG------SFDDYTARFYVACVLEAFEYLH 537 (732)
T ss_pred hhHHhhcCchhhhhhhhcC------CcccchhhhhHHHHHHHHHHHH
Confidence 9999999999999999765 6777777778899999999999
|
|
| >KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.016 Score=57.80 Aligned_cols=84 Identities=26% Similarity=0.313 Sum_probs=60.3
Q ss_pred cCcCCCccccCceecEEEEEeCCCc---e-------------------------e-------EEEeccc-c-CCCceEEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKW---T-------------------------A-------GYSEGTD-F-KGIDFKAV 438 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~---~-------------------------~-------g~~~~~~-~-~~~~~~~l 438 (549)
.|.....||+|+||.||.+...... . . +++.-.+ . ..+.+.++
T Consensus 19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i 98 (322)
T KOG1164|consen 19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI 98 (322)
T ss_pred ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence 7899999999999999999965432 1 0 0000000 1 12456788
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+. -+-+|.++..... ...++-.+.++||.|+..+++|+|
T Consensus 99 VM~l-~G~sL~dl~~~~~----~~~fs~~T~l~ia~q~l~~l~~lH 139 (322)
T KOG1164|consen 99 VMSL-LGPSLEDLRKRNP----PGRFSRKTVLRIAIQNLNALEDLH 139 (322)
T ss_pred EEec-cCccHHHHHHhCC----CCCcCHhHHHHHHHHHHHHHHHHH
Confidence 8885 5678888764332 457899999999999999999999
|
|
| >KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0078 Score=57.73 Aligned_cols=83 Identities=25% Similarity=0.418 Sum_probs=57.0
Q ss_pred cCcCCCccccCceecEEEEE-e-CCCce-----------------------eEEEeccc---c--CCCceEEEEEeecCC
Q 039925 396 EFSSSNMIGQGSFGSVYKGI-L-GEKWT-----------------------AGYSEGTD---F--KGIDFKAVVFDYMQN 445 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~-~-~~~~~-----------------------~g~~~~~~---~--~~~~~~~lv~ey~~~ 445 (549)
+|..++.||+|+||+++.|+ + .+..| ++.|..+. | .....-.||+|.. |
T Consensus 29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLL-G 107 (449)
T KOG1165|consen 29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLL-G 107 (449)
T ss_pred cceeccccccCcceeeecccccccCceEEEEeccccCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhh-C
Confidence 78999999999999999997 2 32222 11111100 0 0023446888865 5
Q ss_pred CCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 446 RSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 446 GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
-||+|+..-.+ ..|+.++.+.||.|...-++|+|
T Consensus 108 PSLEDLFD~Cg-----R~FSvKTV~miA~Qmi~rie~vH 141 (449)
T KOG1165|consen 108 PSLEDLFDLCG-----RRFSVKTVAMIAKQMITRIEYVH 141 (449)
T ss_pred cCHHHHHHHhc-----CcccHHhHHHHHHHHHHHHHHHH
Confidence 57777655332 56999999999999999999999
|
|
| >KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0019 Score=58.45 Aligned_cols=85 Identities=14% Similarity=0.238 Sum_probs=58.4
Q ss_pred ccccccCcCCCccccCceecEEEEEeCCCc--e-----------------------eEE------EeccccCCCceEEEE
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGEKW--T-----------------------AGY------SEGTDFKGIDFKAVV 439 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~--~-----------------------~g~------~~~~~~~~~~~~~lv 439 (549)
|-..++|...+.+|+|.|+.|+.|.--... + .|. ..-..-+......||
T Consensus 34 wg~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLi 113 (338)
T KOG0668|consen 34 WGNQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLI 113 (338)
T ss_pred ccccchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhH
Confidence 566778888999999999999999842222 1 010 000001113456899
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||+.+-+....-. +++-....-+..++..||.|+|
T Consensus 114 FE~v~n~Dfk~ly~---------tl~d~dIryY~~elLkALdyCH 149 (338)
T KOG0668|consen 114 FEYVNNTDFKQLYP---------TLTDYDIRYYIYELLKALDYCH 149 (338)
T ss_pred hhhhccccHHHHhh---------hhchhhHHHHHHHHHHHHhHHH
Confidence 99999887665532 4556667778999999999999
|
|
| >KOG1266 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0056 Score=58.65 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=39.1
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
......++|||+-|++..+|++.+ .....+....-.+++-||..|+.|||
T Consensus 144 ~~rviFiteymssgs~~~fLkrt~--~~~~a~~~~~wkkw~tqIlsal~yLh 193 (458)
T KOG1266|consen 144 KPRVIFITEYMSSGSLKQFLKRTK--KNQKALFQKAWKKWCTQILSALSYLH 193 (458)
T ss_pred ccceEEEEecccchhHHHHHHHHH--HhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence 567788999999999999998655 11234444444679999999999999
|
|
| >cd05119 RIO RIO kinase family, catalytic domain | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.018 Score=52.19 Aligned_cols=42 Identities=7% Similarity=0.006 Sum_probs=28.9
Q ss_pred eEEEEEeecCCCCcccc-cccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDW-PYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~-l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|++... +.... .. .....++.+++.++.++|
T Consensus 89 ~~~lv~e~~~g~~~~~~~l~~~~-------~~-~~~~~~~~~~~~~l~~lh 131 (187)
T cd05119 89 RHVLVMEFIGGDGIPAPRLKDVR-------LL-EDPEELYDQILELMRKLY 131 (187)
T ss_pred CCEEEEEEeCCCCccChhhhhhh-------hc-ccHHHHHHHHHHHHHHHh
Confidence 34799999999765422 22111 11 456788999999999999
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct |
| >KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.0038 Score=55.79 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=59.3
Q ss_pred cccccCcCCCccccCceecEEEEEe-CCCce-------------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGIL-GEKWT-------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~-------------------------------------~g~~~~~~~~~~ 433 (549)
.+.++......||+|+||.|-+-++ ..|.+ +|+... +
T Consensus 43 V~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~r-----e 117 (282)
T KOG0984|consen 43 VPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFR-----E 117 (282)
T ss_pred cchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhc-----c
Confidence 4556667777899999999987665 33433 333333 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++.||.|.- ||..+-+..- ..+...+....-+||..|.+||.|||
T Consensus 118 gdvwIcME~M~t-Sldkfy~~v~--~~g~~ipE~vlGkIa~Svv~al~~L~ 165 (282)
T KOG0984|consen 118 GDVWICMELMDT-SLDKFYRKVL--KKGGTIPEDVLGKIAVSVVHALEFLH 165 (282)
T ss_pred ccEEEeHHHhhh-hHHHHHHHHH--hcCCcCchHHhhHhHHHHHHHHHHHH
Confidence 778899998875 6655533211 02346778888899999999999999
|
|
| >KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.0085 Score=54.91 Aligned_cols=86 Identities=28% Similarity=0.368 Sum_probs=60.5
Q ss_pred ccccCcCCCccccCceecEEEEEe-CCCce----------------------------eEEEecc-ccCCCceEEEEEee
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGIL-GEKWT----------------------------AGYSEGT-DFKGIDFKAVVFDY 442 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~----------------------------~g~~~~~-~~~~~~~~~lv~ey 442 (549)
..+.|...+.||.|+||.+|.|.. ..|.. .|.-.-. -...+.+-.+|||.
T Consensus 13 v~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdL 92 (341)
T KOG1163|consen 13 VGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDL 92 (341)
T ss_pred eccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccccccceeeeec
Confidence 345677788899999999999985 33332 1100000 01115566899997
Q ss_pred cCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 443 MQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 443 ~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
. +-||++...-.. ..++..+.+-.|-|+..-++|+|
T Consensus 93 L-GPsLEdLfnfC~-----R~ftmkTvLMLaDQml~RiEyvH 128 (341)
T KOG1163|consen 93 L-GPSLEDLFNFCS-----RRFTMKTVLMLADQMLSRIEYVH 128 (341)
T ss_pred c-CccHHHHHHHHh-----hhhhHHhHHHHHHHHHHHHHHHH
Confidence 5 668888876433 46888999999999999999999
|
|
| >cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.041 Score=47.32 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=48.6
Q ss_pred CCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEEEEeecCC
Q 039925 400 SNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAVVFDYMQN 445 (549)
Q Consensus 400 ~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~lv~ey~~~ 445 (549)
.+.||+|.++.||++...+..+ .++.. ..+..+++|||+++
T Consensus 3 ~~~i~~g~~~~v~~~~~~~~~~~iK~~~~~~~~~~~~~e~~~~~~l~~~~~~~p~~~~~~~-----~~~~~~~v~e~~~g 77 (155)
T cd05120 3 IKLLKGGLTNRVYLLGTKDEDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGE-----SDGWSYLLMEWIEG 77 (155)
T ss_pred ceecccccccceEEEEecCCeEEEEecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEEcC-----CCCccEEEEEecCC
Confidence 4579999999999998755333 01111 12457899999998
Q ss_pred CCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 446 RSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 446 GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+.+..+ ++.....++.+++++++++|
T Consensus 78 ~~~~~~-------------~~~~~~~~~~~~~~~l~~lh 103 (155)
T cd05120 78 ETLDEV-------------SEEEKEDIAEQLAELLAKLH 103 (155)
T ss_pred eecccC-------------CHHHHHHHHHHHHHHHHHHh
Confidence 877654 34556778999999999999
|
The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.0055 Score=33.95 Aligned_cols=12 Identities=50% Similarity=0.816 Sum_probs=4.8
Q ss_pred CCEeeccccccc
Q 039925 83 LEYLLLANNHFS 94 (549)
Q Consensus 83 L~~L~Ls~n~l~ 94 (549)
|++|+|++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.00059 Score=61.87 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=50.6
Q ss_pred cccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCC
Q 039925 52 HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSA 131 (549)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~ 131 (549)
.+..+...+.||++.|++. .+-..|+-++.|..|+++.|.+. .+|..++++..+ .++++..|+.+ ..|.+++..++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~-~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRET-VNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHH-HHHHhhccchh-hCCccccccCC
Confidence 4455566667777776665 45555666666666677666666 566666666666 66665555554 34444444454
Q ss_pred CCEEEeecce
Q 039925 132 IQVMIFKENS 141 (549)
Q Consensus 132 L~~L~L~~n~ 141 (549)
++++++..|.
T Consensus 113 ~k~~e~k~~~ 122 (326)
T KOG0473|consen 113 PKKNEQKKTE 122 (326)
T ss_pred cchhhhccCc
Confidence 4444444444
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.0072 Score=33.47 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=18.2
Q ss_pred CCCEEEccCCcceecCCccccCC
Q 039925 58 YLRFINLVDNNFRGEIPEKVGRL 80 (549)
Q Consensus 58 ~L~~L~L~~n~l~~~~p~~~~~l 80 (549)
+|++|||++|+|+ .+|..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 5899999999999 888877654
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.023 Score=55.97 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=31.2
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+...|+||.-.+. +|+.++-... .+...+.-|..|..+|..|||
T Consensus 315 ~~tlylvMkrY~~-tLr~yl~~~~-------~s~r~~~~~laQlLEav~hL~ 358 (598)
T KOG4158|consen 315 PKTLYLVMKRYRQ-TLREYLWTRH-------RSYRTGRVILAQLLEAVTHLH 358 (598)
T ss_pred CceEEEehhcchh-hHHHHHhcCC-------CchHHHHHHHHHHHHHHHHHH
Confidence 4456788765544 7887776433 444555568899999999999
|
|
| >PRK12274 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.033 Score=51.05 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=47.6
Q ss_pred CcCCCccccCceecEEEEEeCCCce-----------------------------eEEEe-ccccCCCceEEEEEeecCCC
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEKWT-----------------------------AGYSE-GTDFKGIDFKAVVFDYMQNR 446 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------~g~~~-~~~~~~~~~~~lv~ey~~~G 446 (549)
+.....|++|+||+||.+.-++..+ ++... ......-...+++|||+++.
T Consensus 4 ~~~~~~l~~~~f~~v~~~~~~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~~~~lvmeyI~G~ 83 (218)
T PRK12274 4 PAVNEPLKSDTFGRILLVRGGERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHWDGRHLDRSYLAGA 83 (218)
T ss_pred cccceeecCCCcceEEEeecCCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEcCEEEEEeeecCc
Confidence 3456789999999999776655444 10000 00000012358999999999
Q ss_pred CcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 447 SLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 447 sL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|+..+.. ....+..+++++++|+|
T Consensus 84 ~L~~~~~~-------------~~~~~~~qi~~~L~~lH 108 (218)
T PRK12274 84 AMYQRPPR-------------GDLAYFRAARRLLQQLH 108 (218)
T ss_pred cHHhhhhh-------------hhHHHHHHHHHHHHHHH
Confidence 98754321 11346789999999999
|
|
| >cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.065 Score=49.86 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=36.1
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||++++++.+.+.. ..++..++..++.++++++.+||
T Consensus 74 ~~~~v~e~i~G~~l~~~~~~-------~~~~~~~~~~i~~~i~~~l~~lH 116 (223)
T cd05154 74 TPFYVMERVDGRVLRDRLLR-------PELSPEERRALARALADTLAALH 116 (223)
T ss_pred CceEEEEEeCCEecCCCCCC-------CCCCHHHHHHHHHHHHHHHHHHh
Confidence 45899999999998887642 13677888899999999999999
|
This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain |
| >PRK10359 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.039 Score=51.56 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=52.0
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce-------------------------------------------eEEEeccc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT-------------------------------------------AGYSEGTD 429 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-------------------------------------------~g~~~~~~ 429 (549)
..+.|...+++|.|+||.||......+.+ ..+....+
T Consensus 29 l~~~y~~~~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~ 108 (232)
T PRK10359 29 LSYNIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAE 108 (232)
T ss_pred hhCceEEEEEecCCCceEEEEEecCCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecc
Confidence 45678888999999999999976543332 11111100
Q ss_pred c---CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 F---KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~---~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
. ......++||||++|.+|.++.. ++. ....+++.++..+|
T Consensus 109 ~~~~~~~~~~~lvmEyi~G~tL~~~~~----------~~~----~~~~~i~~~l~~lH 152 (232)
T PRK10359 109 RKTLRYAHTYIMLIEYIEGVELNDMPE----------ISE----DVKAKIKASIESLH 152 (232)
T ss_pred cccccccCCeEEEEEEECCccHHHhhh----------ccH----HHHHHHHHHHHHHH
Confidence 0 11235789999999999988732 121 24568999999999
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.00016 Score=75.15 Aligned_cols=64 Identities=31% Similarity=0.351 Sum_probs=35.6
Q ss_pred ccEEEcCCCcccccCCCcCccccCCc-cccCeeeccCcccccc----CCccccCCCCCCEEEccCCccc
Q 039925 251 LYALTMVKNKLSGPIPHHIASSLGNL-TLLTYLALDNNKLQGN----LPSSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 251 L~~L~L~~n~l~~~~p~~l~~~l~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 314 (549)
+..|++..|.+.+..-..+...+..+ ..++.++++.|.|+.. +...+..++.++.+.+++|.+.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44466666665533222223344444 5667777777777643 2334455667777777777665
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.00032 Score=72.88 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=46.3
Q ss_pred ccEEEccccccccccCh----hhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccc
Q 039925 225 ATIIAMGGNQISGTITL----GIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQG 291 (549)
Q Consensus 225 L~~L~l~~n~l~~~~~~----~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (549)
+..|++..|.+.+.... .+..+. ..++.++++.|.|+......+...+..++.+++|.+++|.+..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~-~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLS-ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccc-hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 55578888877644211 121111 4568889999998876666667777888899999999998874
|
|
| >PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.023 Score=53.89 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=28.1
Q ss_pred EEEEeecCC-CCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQN-RSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~-GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++ ++|.+++... +++. ....++++++.+||
T Consensus 122 ~lV~e~l~G~~~L~~~l~~~-------~l~~----~~~~~i~~~l~~lH 159 (239)
T PRK01723 122 DILIERIEGARDLVALLQEA-------PLSE----EQWQAIGQLIARFH 159 (239)
T ss_pred eEEEEecCCCCCHHHHHhcC-------CCCH----HHHHHHHHHHHHHH
Confidence 599999997 6898887642 2333 23578999999999
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.0014 Score=59.55 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=65.9
Q ss_pred cccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCC
Q 039925 76 KVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRS 155 (549)
Q Consensus 76 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 155 (549)
.+....+.+.||++.|++. .+-..|..++.+ ..|+++.|++. .+|..++.+..+..+++..|.++ ..|.+++..+.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~-~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRL-VRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHH-HHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 4566677888888888877 556667777777 88888888876 56777777777777777777776 67777777777
Q ss_pred CCEEecccCcce
Q 039925 156 LFYDNINRNEFS 167 (549)
Q Consensus 156 L~~L~L~~n~l~ 167 (549)
++++++-+|.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 777777777654
|
|
| >TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.12 Score=53.65 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=20.0
Q ss_pred cCcCCCccccCceecEEEEEeCCCce
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKWT 421 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~~ 421 (549)
.|+ .+-||.|++|.||+|++++|..
T Consensus 119 ~fd-~~plasaSigQVh~A~l~~G~~ 143 (437)
T TIGR01982 119 EFE-EKPLAAASIAQVHRARLVDGKE 143 (437)
T ss_pred hCC-CcceeeeehhheEEEEecCCCE
Confidence 344 3579999999999999987664
|
This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.056 Score=27.74 Aligned_cols=12 Identities=42% Similarity=0.537 Sum_probs=4.0
Q ss_pred CCEeeccccccc
Q 039925 83 LEYLLLANNHFS 94 (549)
Q Consensus 83 L~~L~Ls~n~l~ 94 (549)
|+.|+|++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 549 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 1e-15 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-15 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 5e-10 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 549 | |||
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 3e-54 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-44 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-43 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 6e-39 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 7e-24 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 9e-22 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 8e-19 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 2e-10 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 3e-10 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 3e-21 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 7e-15 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 5e-20 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 1e-18 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 3e-17 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 6e-17 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 3e-15 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 6e-15 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 5e-05 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 6e-17 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 3e-15 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 3e-14 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 4e-14 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 1e-12 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 3e-12 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 1e-06 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 6e-06 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 2e-04 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 1e-14 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 3e-14 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 7e-14 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 5e-11 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 5e-10 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 6e-10 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 7e-06 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 8e-04 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 4e-11 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 2e-08 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 8e-08 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 4e-04 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 8e-11 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 7e-08 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 8e-11 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 2e-10 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 2e-09 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 3e-08 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 2e-10 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 2e-08 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 2e-08 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 1e-06 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 3e-10 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 2e-09 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 3e-09 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 8e-09 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 7e-08 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 5e-04 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 7e-10 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 3e-07 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 5e-07 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-09 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 9e-07 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 3e-06 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 4e-06 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 3e-05 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 4e-09 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 2e-08 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 8e-06 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 9e-06 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 3e-08 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 3e-08 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 1e-06 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 6e-08 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 8e-08 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 9e-08 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 1e-05 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 1e-07 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 2e-07 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 3e-05 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 1e-07 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 8e-06 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 1e-07 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 4e-07 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 2e-05 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 3e-07 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 1e-06 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 2e-06 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 2e-04 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 2e-06 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 3e-06 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 7e-04 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 4e-06 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 9e-06 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 2e-04 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 9e-06 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 1e-05 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 2e-05 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 3e-05 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 4e-05 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 5e-05 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 6e-05 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 2e-04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 2e-04 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 7e-04 |
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 3e-54
Identities = 86/381 (22%), Positives = 127/381 (33%), Gaps = 92/381 (24%)
Query: 1 ETDHLALLAIKSLLHDRRGVTSSWSNSIDLCQ--WRGVTCTHQHQRIN------------ 46
D ALL IK L + SSW + D C W GV C Q
Sbjct: 5 PQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 47 --KCLTPHVGNFGYLRFINLVD-NNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSH 103
+ + N YL F+ + NN G IP + +L +L YL + + + SG IP LS
Sbjct: 64 KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 104 CSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINR 163
L + F N+L G P ++S+L +L +
Sbjct: 124 IKTL-------------------------VTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
Query: 164 NEFSGLIPSFIFNISLKWNFLP--ENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDV 221
N SG IP + S + + N TG +P
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA----------------------- 195
Query: 222 STTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTY 281
+ + + N + G ++ N + + KN L+ + +G L
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFGSD--KNTQKIHLAKNSLAFDLG-----KVGLSKNLNG 248
Query: 282 LALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPLNSQHNHSFSCPGFEFSVIKLE 341
L L NN++ G LP L + L L+VS N L +P + S
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA----------- 297
Query: 342 FQIPGNKKLCGGLDELHLLSC 362
NK LCG L +C
Sbjct: 298 --YANNKCLCGS----PLPAC 312
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 1e-44
Identities = 65/272 (23%), Positives = 108/272 (39%), Gaps = 31/272 (11%)
Query: 51 PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110
P +G+ L+ +++ N G+ + L+ L +++N F G IP +L
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSL-QY 273
Query: 111 LFICETHLSGQLLDFI-GNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL 169
L + E +G++ DF+ G + + N G P + L ++ N FSG
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 170 IP-SFIFNI-SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATI 227
+P + + LK L N F+G LP + ++S +
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLT---------------------NLSASLLT 372
Query: 228 IAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNN 287
+ + N SG I + + L L + N +G IP +L N + L L L N
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP----PTLSNCSELVSLHLSFN 428
Query: 288 KLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
L G +PSSLG L +L + N L +P
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 1e-43
Identities = 81/348 (23%), Positives = 136/348 (39%), Gaps = 57/348 (16%)
Query: 53 VGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLF 112
+G+ LR + L N GEIP+++ + LE L+L N +G+IP+ LS+C+N L +
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-LNWIS 496
Query: 113 ICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPS 172
+ L+G++ +IG + ++ NS G P L + RSL + ++N N F+G IP+
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Query: 173 FIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVS-----TTATI 227
+F S K + N G + I + + + +T
Sbjct: 557 AMFKQSGK---IAANFIAGKRYVYIK-NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 228 IAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNN 287
+ G + ++ L M N LSG IP +G++ L L L +N
Sbjct: 613 CNITSRVYGGHTSPTFDNNG--SMMFLDMSYNMLSGYIP----KEIGSMPYLFILNLGHN 666
Query: 288 KLQGNLPSSLGYYQNLMELSVSRNKLSASLPP----------LNSQHNHSFSCPGFEFSV 337
+ G++P +G + L L +S NKL +P ++ +N+
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN----------- 715
Query: 338 IKLEFQIP--------------GNKKLCGGLDELHLLSCHSKESKRQT 371
L IP N LCG L C +
Sbjct: 716 --LSGPIPEMGQFETFPPAKFLNNPGLCG----YPLPRCDPSNADGYA 757
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 6e-39
Identities = 62/339 (18%), Positives = 114/339 (33%), Gaps = 82/339 (24%)
Query: 1 ETDHLALLAIKSLLHDRRGVTSSWSNSIDLCQWRGVTCTHQH-----------QRINKCL 49
+ L++ K +L D+ + WS++ + C + GVTC +
Sbjct: 11 YREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAV 69
Query: 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPA--NLSHCSNL 107
+ + + L + L +++ G + L L L+ N SG + +L CS L
Sbjct: 70 SSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128
Query: 108 LTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFP-NTLSNLRSLFYDNINRNEF 166
+ L+ N+L+ + L SL +++ N
Sbjct: 129 -------------KFLNVSS------------NTLDFPGKVSGGLKLNSLEVLDLSANSI 163
Query: 167 SGLIPSFIFNI----SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVS 222
SG LK + N +G++ + V L
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL--------------------- 202
Query: 223 TTATIIAMGGNQISGTI-TLG-IKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLT 280
+ + N S I LG L +++ NKLSG ++ T L
Sbjct: 203 ---EFLDVSSNNFSTGIPFLGDCSALQHLDISG-----NKLSGDFS----RAISTCTELK 250
Query: 281 YLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
L + +N+ G +P ++L LS++ NK + +P
Sbjct: 251 LLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPD 287
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 7e-24
Identities = 48/345 (13%), Positives = 102/345 (29%), Gaps = 53/345 (15%)
Query: 3 DHLALLAIKSLLHDRRG--------VTSSWSNSIDLCQWR---GVTCTHQHQRINKCLTP 51
D+LAL I L+ + ++W+ + +L W GV+
Sbjct: 31 DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSL------------- 77
Query: 52 HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSG----KIPANLSHCSNL 107
+ G + ++L G +P+ +G+L LE L L ++ P +S +
Sbjct: 78 --NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 108 LTKLFICETHLSGQLLDFIGNP--SAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNE 165
K H +D+ S + + + + N
Sbjct: 136 EQKQ-KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194
Query: 166 FSGLIPSFIFNI-SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVS-- 222
+ + + + L+ ++ + F E AQ+ D+
Sbjct: 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAW-------ENENSEYAQQYKTEDLKWD 246
Query: 223 --TTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSG----PIPHHIASSLGNL 276
T + + + +K L + + + N+ +
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKAL--PEMQLINVACNRGISGEQLKDDWQALADAPVG 304
Query: 277 TLLTYLALDNNKLQ-GNLPSSLGYYQNLMELSVSRNKLSASLPPL 320
+ + + N L+ + +SL + L L N+L LP
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF 349
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 9e-22
Identities = 37/274 (13%), Positives = 76/274 (27%), Gaps = 39/274 (14%)
Query: 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHL 118
N K L L + + N K+P L + + +
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM-QLINVACNRG 285
Query: 119 --------SGQLLDFIGNPSAIQVMIFKENSL-EGKFPNTLSNLRSLFYDNINRNEFSGL 169
Q L IQ++ N+L +L ++ L N+ G
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345
Query: 170 IPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIA 229
+P+F I L L N T +P + + ++
Sbjct: 346 LPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQ------------V---------ENLS 383
Query: 230 MGGNQISG-TITLGIKKLIFVNLYALTMVKNKLSGPIPHHIAS---SLGNLTLLTYLALD 285
N++ K + + A+ N++ + + ++ + L
Sbjct: 384 FAHNKLKYIPNIFDAKSV--SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441
Query: 286 NNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
NN++ L +++ N L+ +P
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLMGNMLT-EIPK 474
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 8e-19
Identities = 42/277 (15%), Positives = 81/277 (29%), Gaps = 31/277 (11%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
L + + N G++P G +L L LA N + IPAN + + L
Sbjct: 327 QKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSF 384
Query: 114 CETHLSG-QLLDFIGNPSAIQVMIFKENSLEG-------KFPNTLSNLRSLFYDNINRNE 165
L + + S + + F N + T ++ N++ N+
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444
Query: 166 FSGLIPSFIFNI-SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTT 224
S L L N T +P + LL +
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLL--TSID------- 494
Query: 225 ATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIA--SSLGNLTLLTYL 282
+ N+++ ++ + L + + N S P S+L +
Sbjct: 495 -----LRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547
Query: 283 ALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
N+ P + +L +L + N + +
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNE 583
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 21/216 (9%), Positives = 54/216 (25%), Gaps = 35/216 (16%)
Query: 148 NTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRN 206
N+ + L ++ SG +P I ++ L+ L + N L + +
Sbjct: 78 NSNGRVTGL---SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134
Query: 207 YYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIP 266
+ T + F +L + + I
Sbjct: 135 DEQKQKMR------------------MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176
Query: 267 HHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPLNSQHNH 326
S T + +N + + ++ L + + + A ++ +
Sbjct: 177 ----KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN 231
Query: 327 SFSCPGFEFSVIKLEFQIPGNKKLCGGLDELHLLSC 362
+ L ++ + +C
Sbjct: 232 --------SEYAQQYKTEDLKWDNLKDLTDVEVYNC 259
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 37/268 (13%), Positives = 61/268 (22%), Gaps = 70/268 (26%)
Query: 49 LTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLL 108
L P + INL +N E L + L N + IP N
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSL------ 477
Query: 109 TKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSG 168
N L ++ N+ +
Sbjct: 478 -----------------------------------KDENENFKNTYLLTSIDLRFNKLTK 502
Query: 169 LIPSFIFN--ISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTAT 226
L F L L NSF+ P + + +
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL----NSSTLKGFGIRNQRDAQ------- 550
Query: 227 IIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDN 286
GN+ GI +L L + N + + I ++ L + +
Sbjct: 551 -----GNRTLREWPEGITLCP--SLTQLQIGSNDIRK-VNEKI------TPNISVLDIKD 596
Query: 287 NKLQGNLPSSLGYYQNLMELSVSRNKLS 314
N S + Y + +K
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKTQ 624
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 96.9 bits (241), Expect = 3e-21
Identities = 44/349 (12%), Positives = 97/349 (27%), Gaps = 46/349 (13%)
Query: 2 TDHLALLAIKSLLH-----------DRRGVTSSWSNSIDLCQWRGVTCTHQHQRINKCLT 50
D+ AL AI L + + +W+ + +L W
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVD---------- 318
Query: 51 PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPA------NLSHC 104
+ N G + ++L +G +P+ +G+L L+ L + +
Sbjct: 319 --LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376
Query: 105 SNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRN 164
++ + + + +Q I + ++ ++ +L+ N+ N
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT-N 435
Query: 165 EFSGLIPSFIFNI-SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVST 223
+ I I + L+ + + FT +
Sbjct: 436 RITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW---SNLK 491
Query: 224 TATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIP-----HHIASSLGNLTL 278
T + + + + L L +L + N+ +A
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDL--PELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549
Query: 279 LTYLALDNNKLQGNLPSS--LGYYQNLMELSVSRNKLSASLPPLNSQHN 325
+ + N L+ P+S L L L NK+ L +
Sbjct: 550 IQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVK 596
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 7e-15
Identities = 39/295 (13%), Positives = 84/295 (28%), Gaps = 38/295 (12%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
L ++ V N R + G +L L L N IP + ++ + L
Sbjct: 570 QKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGF 626
Query: 114 CETHLSG-QLLDFIGNPSAIQVMIFKENSLEGKFPNTLS-----NLRSLFYDNINRNEFS 167
L + + + + F N + + N + ++ NE
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686
Query: 168 GLIPSFIFNI-SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTAT 226
+ L N T ++P LL +
Sbjct: 687 KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLL--TTID--------- 734
Query: 227 IIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIA--SSLGNLTLLTYLAL 284
+ N+++ +++ + L + + N S P S L +
Sbjct: 735 ---LRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789
Query: 285 DNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP--------LNSQHNHSFSCP 331
+ N++ P+ + +L++L + N + + L+ N + S
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYILDIADNPNISID 843
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 5e-20
Identities = 62/286 (21%), Positives = 99/286 (34%), Gaps = 15/286 (5%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
+ L +++ N PE +L L+ L L +N S + C+N LT+L +
Sbjct: 46 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN-LTELHL 104
Query: 114 CETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIP-- 171
+ + + + N L T L +L ++ N+ L
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164
Query: 172 -SFIFNISLKWNFLPENSFTGNLPLEIG-----VTLPKGRNYYILLLAQKLYWSDVSTTA 225
N SLK L N P L L +KL +T+
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224
Query: 226 TIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALD 285
+++ +Q+S T L + NL L + N L+ S L L Y L+
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLE 280
Query: 286 NNKLQGNLPSSLGYYQNLMELSVSRN--KLSASLPPLNSQHNHSFS 329
N +Q SL N+ L++ R+ K S SL L + SF
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 1e-18
Identities = 43/261 (16%), Positives = 82/261 (31%), Gaps = 26/261 (9%)
Query: 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPAN-LSHCSNLLTKLFICETH 117
L +NL N + L LE L L N ++ N + ++++
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN-IFEIYLSYNK 441
Query: 118 LSGQLLDFIGNPSAIQVMIFKENSLEG--KFPNTLSNLRSLFYDNINRNEFSGLIPSFIF 175
+ ++Q ++ + +L+ P+ LR+L +++ N + + +
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501
Query: 176 NI-SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQ 234
+ L+ L N+ + G Y L L+ ++ N
Sbjct: 502 GLEKLEILDLQHNNLA-----RLWKHANPGGPIYFLKGLSHLHILNLE---------SNG 547
Query: 235 ISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLP 294
K L L + + N L+ S N L L L N +
Sbjct: 548 FDEIPVEVFKDL--FELKIIDLGLNNLNTLPA----SVFNNQVSLKSLNLQKNLITSVEK 601
Query: 295 SSLGY-YQNLMELSVSRNKLS 314
G ++NL EL + N
Sbjct: 602 KVFGPAFRNLTELDMRFNPFD 622
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 3e-17
Identities = 42/266 (15%), Positives = 84/266 (31%), Gaps = 20/266 (7%)
Query: 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL--LTKLFICET 116
L+ + L N + P + RL L L N + L + L + +
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232
Query: 117 HLSGQLLDFIGN--PSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFI 174
LS + + ++ N+L ++ + L L Y + N L +
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292
Query: 175 FNI-SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGN 233
+ ++++ L + ++ L + + L + M N
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDF----SFQWLKCL---------EHLNMEDN 339
Query: 234 QISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNL 293
I G + LI NL L++ + S + + L L L NK+
Sbjct: 340 DIPGIKSNMFTGLI--NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397
Query: 294 PSSLGYYQNLMELSVSRNKLSASLPP 319
+ + +L L + N++ L
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTG 423
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 6e-17
Identities = 44/300 (14%), Positives = 86/300 (28%), Gaps = 60/300 (20%)
Query: 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICE--- 115
L ++L+ N+ + + L L L++N S NL +L +
Sbjct: 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL-QELLLSNNKI 157
Query: 116 THLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIF 175
L + LD N S ++ + N ++ P + LF +N + + +
Sbjct: 158 QALKSEELDIFANSS-LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216
Query: 176 ----NISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMG 231
N S++ L + + L L T++ +
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFL-----------GLKWTNL---------TMLDLS 256
Query: 232 GNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIA--------------------- 270
N ++ L L + N + H +
Sbjct: 257 YNNLNVVGNDSFAWL--PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314
Query: 271 --------SSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPLNS 322
S L L +L +++N + G + NL LS+S + S +
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-15
Identities = 42/266 (15%), Positives = 81/266 (30%), Gaps = 27/266 (10%)
Query: 56 FGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICE 115
+ +NL N R R +L L + N S P L L +
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM-LKVLNLQH 82
Query: 116 THLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIF 175
LS + + + NS++ N ++L +++ N S
Sbjct: 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142
Query: 176 NI-SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQ 234
+ +L+ L N E+ +++ + + NQ
Sbjct: 143 QLENLQELLLSNNKIQALKSEELD--------------------IFANSSLKKLELSSNQ 182
Query: 235 ISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLP 294
I + L+ L + +L + + L T + L+L N++L
Sbjct: 183 IKEFSPGCFHAI--GRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSN 239
Query: 295 SSLG--YYQNLMELSVSRNKLSASLP 318
++ + NL L +S N L+
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGN 265
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 6e-15
Identities = 52/276 (18%), Positives = 91/276 (32%), Gaps = 34/276 (12%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPAN---LSHCSNLLTK 110
L +N+ DN+ G L L+YL L+N+ S + N +S + L
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385
Query: 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFP-NTLSNLRSLFYDNINRNEFSGL 169
L + + +S D ++V+ N + + L ++F ++ N++ L
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445
Query: 170 IP-SFIFNISLKWNFLPENSFTG-NLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATI 227
SF SL+ L + + L L D+S
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN------------LTILDLS----- 488
Query: 228 IAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLS----GPIPHHIASSLGNLTLLTYLA 283
N I+ ++ L L L + N L+ P L L+ L L
Sbjct: 489 ----NNNIANINDDMLEGL--EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Query: 284 LDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
L++N L + + N L+ +LP
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPA 577
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 247 IFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMEL 306
+ N+ L + N+L ++ + LT L + N + P L L
Sbjct: 23 LPTNITVLNLTHNQLRRLPA----ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 78
Query: 307 SVSRNKLSASLPP 319
++ N+LS L
Sbjct: 79 NLQHNELS-QLSD 90
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 6e-17
Identities = 45/270 (16%), Positives = 87/270 (32%), Gaps = 24/270 (8%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
+F L+ ++L + L L L+L N S S+ L KL
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS-LQKLVA 107
Query: 114 CETHLSGQLLDFIGNPSAIQVMIFKENSLEG-KFPNTLSNLRSLFYDNINRNEFSGLIPS 172
ET+L+ IG+ ++ + N ++ K P SNL +L + +++ N+ + +
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 173 FIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGG 232
+ + + N I K + L L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR------------------N 209
Query: 233 NQISGTIT-LGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKL-- 289
N S + I+ L + ++ L + + + G + S+L L LT L
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269
Query: 290 -QGNLPSSLGYYQNLMELSVSRNKLSASLP 318
++ N+ S+ +
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 3e-15
Identities = 43/286 (15%), Positives = 75/286 (26%), Gaps = 50/286 (17%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL-----L 108
+ +LV F ++L L N F L L
Sbjct: 279 NCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336
Query: 109 TKLFICETHLSG-QLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFS 167
E L + LD N S +G + SL Y +++ N
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRN----------GLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 168 GLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPK------------GRNYYILLLAQK 215
+ +F+ L+ ++ + ++L I
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 216 LYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMV---KNKLSGPIPHHIASS 272
L ++ GN I F L LT + + +L P ++
Sbjct: 447 LEVLKMA---------GNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLSP----TA 489
Query: 273 LGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLP 318
+L+ L L + +N +L L S N + S
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 44/290 (15%), Positives = 85/290 (29%), Gaps = 40/290 (13%)
Query: 62 INLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQ 121
++L N I + RL L L NN S + L + +
Sbjct: 182 LDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 122 LLDFIGNPSAIQ---VMIFKENSLE------GKFPNTLSNLRSLFYDNINRNEFSGLIPS 172
+ SA++ + +E L + + L ++ ++ +
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKD 299
Query: 173 FIFNISLKWNFLPENSFTGNLPLEIG------VTLPKGRNYYILLLAQKLYWSDVS---- 222
F +N + L F L++ T KG N + + L + D+S
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359
Query: 223 -------------TTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHI 269
T+ + + N + T++ L L L + L
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL--EQLEHLDFQHSNLKQMSEF-- 414
Query: 270 ASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
S +L L YL + + + +L L ++ N + P
Sbjct: 415 -SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 4e-14
Identities = 43/268 (16%), Positives = 76/268 (28%), Gaps = 36/268 (13%)
Query: 59 LRFINLVDN--NFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICET 116
L F++L N +F+G + L+YL L+ N + +N L L +
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH-LDFQHS 406
Query: 117 HLSGQL-LDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIF 175
+L + + + F + L SL + N F IF
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 176 N--ISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGN 233
+L + L + P L ++ M N
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSL-------------SSL---------QVLNMSHN 504
Query: 234 QISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNL 293
T K L +L L N + + +L +L L N
Sbjct: 505 NFFSLDTFPYKCL--NSLQVLDYSLNHIMTSKKQELQHFPSSLA---FLNLTQNDFACTC 559
Query: 294 PSS--LGYYQNLMELSVSRNKLSASLPP 319
L + ++ +L V ++ + P
Sbjct: 560 EHQSFLQWIKDQRQLLVEVERMECATPS 587
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 2/145 (1%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
+ L ++++ + R L LE L +A N F ++ LT L +
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 114 CETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSF 173
+ L + S++QV+ N+ L SL + + N
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 174 IFNI--SLKWNFLPENSFTGNLPLE 196
+ + SL + L +N F +
Sbjct: 538 LQHFPSSLAFLNLTQNDFACTCEHQ 562
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 45/286 (15%), Positives = 86/286 (30%), Gaps = 27/286 (9%)
Query: 49 LTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLL----LANNHFSGKIPANLSHC 104
L + N L ++L N + + L ++ L L+ N + P
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200
Query: 105 SNLLTKLFICETHLSGQLL-DFIGNPSAIQV------MIFKENSLEGKFPNTLSNLRSLF 157
L KL + S ++ I + ++V E +LE + L L +L
Sbjct: 201 R--LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 158 YDN--INRNEFSGLIPSFIFN--ISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLA 213
+ + ++ +FN ++ L + ++ L+
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ-----HLELVN 313
Query: 214 QKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSL 273
K ++ + G L +L L + +N LS + S
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP--SLEFLDLSRNGLS--FKGCCSQSD 369
Query: 274 GNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
T L YL L N + + S+ + L L + L
Sbjct: 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF 414
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 48/203 (23%)
Query: 129 PSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFN------ISLKWN 182
P + + + N L + + L +++R E + + + L N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 183 FL---PENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTI 239
+ +F+G L+ L+ + ++
Sbjct: 87 PIQSLALGAFSGLSSLQ------------KLVAVE------------------TNLASLE 116
Query: 240 TLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGY 299
I L L L + N + + NLT L +L L +NK+Q + L
Sbjct: 117 NFPIGHL--KTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 300 YQNL----MELSVSRNKLSASLP 318
+ + L +S N ++ P
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQP 194
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 226 TIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALD 285
++ + +I + L +L L + N + + L+ L L
Sbjct: 55 QVLDLSRCEIQTIEDGAYQSL--SHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAV 108
Query: 286 NNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
L +G+ + L EL+V+ N + + P
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 247 IFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMEL 306
+ + L + N L S + L L L ++Q + +L L
Sbjct: 26 LPFSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81
Query: 307 SVSRNKLSASLPPL 320
++ N + +
Sbjct: 82 ILTGNPIQSLALGA 95
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 44/277 (15%), Positives = 86/277 (31%), Gaps = 22/277 (7%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
+ L + L N + L++L S L + L L++
Sbjct: 78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL-ESLYL 136
Query: 114 CETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSL--FYDNINRNEFSGLIP 171
H+S L ++V+ F+ N++ +S+L+ N+N N+ +G+ P
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196
Query: 172 SFIFNISLKWNFLPENSFTGNLPLEIG----VTLPKG--RNYYILLLAQKLYWSDVSTTA 225
+ + + + +L G + ++ ++ +
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256
Query: 226 TIIAMGGNQISGTITLGIKKLIFVNLYALTMV---KNKLSGPIPHHIASSLGNLTLLTYL 282
I + + I F L + LS + S L L+ L L
Sbjct: 257 ESINLQKHYFFN-----ISSNTFHCFSGLQELDLTATHLS-----ELPSGLVGLSTLKKL 306
Query: 283 ALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
L NK + S + +L LS+ N L
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 41/262 (15%), Positives = 70/262 (26%), Gaps = 25/262 (9%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
L F++L + RL+ L+L N LS L LF
Sbjct: 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA-LKHLFF 112
Query: 114 CETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIP-S 172
+T +S + N ++ + N + L + N L
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172
Query: 173 FIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGG 232
L + GN I + L GG
Sbjct: 173 MSSLQQATNLSL---NLNGNDIAGIEPGAFDSAVFQSLNF------------------GG 211
Query: 233 NQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGN 292
Q I G+K +L+ T I + L ++ + + L +
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDED-ISPAVFEGLCEMS-VESINLQKHYFFNI 269
Query: 293 LPSSLGYYQNLMELSVSRNKLS 314
++ + L EL ++ LS
Sbjct: 270 SSNTFHCFSGLQELDLTATHLS 291
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 7e-14
Identities = 48/270 (17%), Positives = 85/270 (31%), Gaps = 31/270 (11%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
F L+ ++L + E+P + L L+ L+L+ N F + S+ +L T L I
Sbjct: 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL-THLSI 332
Query: 114 CETHLSGQLLD-FIGNPSAIQVMIFKENSLE--GKFPNTLSNLRSLFYDNINRNEFSGLI 170
+L + N ++ + + +E L NL L N++ NE L
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 171 P-SFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIA 229
+F L+ L L L + L
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL--------L-KVLN------------ 431
Query: 230 MGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKL 289
+ + + + L L L + N +SL L L L L L
Sbjct: 432 LSHSLLDISSEQLFDGL--PALQHLNLQGNHFPKGNIQKT-NSLQTLGRLEILVLSFCDL 488
Query: 290 QGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
+ + + + +S N+L+ S
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLT-SSSI 517
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 46/290 (15%), Positives = 85/290 (29%), Gaps = 46/290 (15%)
Query: 49 LTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLL 108
L + L+ + L N F L +L + N ++ L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
Query: 109 TKLFICETHL--SGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEF 166
+L + + S + N S +Q + N L ++
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412
Query: 167 SGLIPSFIFN-------ISLKWNFL---PENSFTGNLPLEIGVTLPKGRNYYILLLAQ-K 215
F ++L + L E F G L+ L L
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH------------LNLQGNH 460
Query: 216 LYWSDVSTTATIIAMG--------GNQISGTITLGIKKLIFVNLYALTMV---KNKLSGP 264
++ T ++ +G +S I + F +L + V N+L+
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSS-----IDQHAFTSLKMMNHVDLSHNRLTSS 515
Query: 265 IPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLS 314
+L +L + YL L +N + LPS L +++ +N L
Sbjct: 516 SI----EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 38/274 (13%), Positives = 73/274 (26%), Gaps = 37/274 (13%)
Query: 54 GNFGYLRFINL-VDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL-LTKL 111
+ ++L ++ N I + L I L + + L
Sbjct: 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233
Query: 112 FICE---THLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSG 168
+ +S + + + S ++ + +++ NT L ++ S
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE 292
Query: 169 LIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATII 228
L + +LK L N F + P L L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISAS-NFPS--------L-THLS----------- 331
Query: 229 AMGGNQISGTITLGIKKLIFVNLYALTMV---KNKLSGPIPHHIASSLGNLTLLTYLALD 285
+ GN + G NL L + + + L NL+ L L L
Sbjct: 332 -IKGNTKRLELGTGC----LENLENLRELDLSHDDIETS--DCCNLQLRNLSHLQSLNLS 384
Query: 286 NNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
N+ + L L ++ +L
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 6e-10
Identities = 45/259 (17%), Positives = 82/259 (31%), Gaps = 30/259 (11%)
Query: 58 YLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETH 117
F ++ D + + E + + +E + L ++F S L +L + TH
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGL-QELDLTATH 289
Query: 118 LSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFN- 176
LS +L + S ++ ++ N E + SN SL + +I N + +
Sbjct: 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348
Query: 177 -ISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQI 235
+L+ L + L + L L+ N+
Sbjct: 349 LENLRELDLSHDDIE-TSDCCNL-QLRNLSHLQSLNLS------------------YNEP 388
Query: 236 SGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPS 295
T K+ L L + +L S NL LL L L ++ L +
Sbjct: 389 LSLKTEAFKEC--PQLELLDLAFTRLKVKDAQ---SPFQNLHLLKVLNLSHSLLDISSEQ 443
Query: 296 SLGYYQNLMELSVSRNKLS 314
L L++ N
Sbjct: 444 LFDGLPALQHLNLQGNHFP 462
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 35/243 (14%), Positives = 67/243 (27%), Gaps = 59/243 (24%)
Query: 55 NFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFIC 114
N +L+ +NL N E +LE L LA K + +LL L +
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433
Query: 115 ETHLSGQLLDFIGNPSAIQVMIFKENSLEG---KFPNTLSNLRSLFYDNINRNEFSGLIP 171
+ L A+Q + + N + N+L L L ++ + S +
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493
Query: 172 SFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMG 231
++ + + +
Sbjct: 494 HAFTSLK-------------MM--------------------NHVD------------LS 508
Query: 232 GNQISGTITLGIKKLIFVNLYALT--MVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKL 289
N+++ +L + + N +S +P S L L+ + L N L
Sbjct: 509 HNRLT-----SSSIEALSHLKGIYLNLASNHISIILP----SLLPILSQQRTINLRQNPL 559
Query: 290 QGN 292
Sbjct: 560 DCT 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 25/154 (16%), Positives = 42/154 (27%), Gaps = 26/154 (16%)
Query: 41 QHQRINKCLTPHV-GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPA 99
R+ N L+ +NL + + L L++L L NHF
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467
Query: 100 NLSHCSNL--LTKLFICETHLSG------------QLLDFIGNP-SAIQVMIFK------ 138
+ L L L + LS +D N ++ +
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY 527
Query: 139 ----ENSLEGKFPNTLSNLRSLFYDNINRNEFSG 168
N + P+ L L N+ +N
Sbjct: 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 4e-11
Identities = 65/272 (23%), Positives = 104/272 (38%), Gaps = 44/272 (16%)
Query: 51 PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110
+ N LR + L ++N P + L ++ L L NH + LS+ + L
Sbjct: 104 SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGL-NY 159
Query: 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLI 170
L + E+ + + I N + + + N +E + L++L SL Y N+ + +
Sbjct: 160 LTVTESKVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDIT 215
Query: 171 PSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAM 230
P L + N T PL L L +
Sbjct: 216 P-VANMTRLNSLKIGNNKITDLSPLANLSQL------------TWLE------------I 250
Query: 231 GGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQ 290
G NQIS I +K L L L + N++S S L NL+ L L L+NN+L
Sbjct: 251 GTNQIS-DIN-AVKDL--TKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLG 300
Query: 291 GNLPSSLGYYQNLMELSVSRNKLSASLPPLNS 322
+G NL L +S+N ++ + PL S
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNHIT-DIRPLAS 331
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 42/266 (15%), Positives = 86/266 (32%), Gaps = 47/266 (17%)
Query: 51 PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110
+ N + +NL N+ ++ + + L YL + + P +++ ++L
Sbjct: 126 SPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDL-YS 181
Query: 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFP-NTLSNLRSLFYDNINRNEFSGL 169
L + + + + + +++ N + P ++ L SL I N+ + L
Sbjct: 182 LSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSL---KIGNNKITDL 236
Query: 170 IPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIA 229
P L W + N + ++ L ++
Sbjct: 237 SP-LANLSQLTWLEIGTNQISDINAVKDLTKL------------------------KMLN 271
Query: 230 MGGNQISGTITLG-IKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNK 288
+G NQIS L + +L + L N+L +G LT LT L L N
Sbjct: 272 VGSNQISDISVLNNLSQLNSLFLN-----NNQLGNEDM----EVIGGLTNLTTLFLSQNH 322
Query: 289 LQGNLPSSLGYYQNLMELSVSRNKLS 314
+ L + + +
Sbjct: 323 ITD--IRPLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 8e-08
Identities = 46/268 (17%), Positives = 94/268 (35%), Gaps = 45/268 (16%)
Query: 51 PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110
+ N L + + N + L L L L ++ S P L++ + +
Sbjct: 82 SPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTK-MYS 136
Query: 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLI 170
L + H L + N + + + E+ ++ ++NL L+ ++N N+ +
Sbjct: 137 LNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDIS 193
Query: 171 PSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAM 230
P SL + N T P+ + + L + +
Sbjct: 194 P-LASLTSLHYFTAYVNQITDITPVA---NMTR------L---------------NSLKI 228
Query: 231 GGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQ 290
G N+I+ + L L L + N++S +++ +LT L L + +N++
Sbjct: 229 GNNKITDLS--PLANL--SQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQIS 278
Query: 291 GNLPSSLGYYQNLMELSVSRNKLSASLP 318
S L L L ++ N+L
Sbjct: 279 D--ISVLNNLSQLNSLFLNNNQLGNEDM 304
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 34/233 (14%), Positives = 86/233 (36%), Gaps = 40/233 (17%)
Query: 100 NLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYD 159
+ + + + + ++ + +I ++ + + L +L Y
Sbjct: 17 PDADLAEG-IRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYL 71
Query: 160 NINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWS 219
N+N N+ + + P + L ++ N T L+ L ++LY +
Sbjct: 72 NLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNL------------RELYLN 118
Query: 220 DVSTTA----------TIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHI 269
+ + + + +G N ++ + + L LT+ ++K+ P
Sbjct: 119 EDNISDISPLANLTKMYSLNLGANHNLSDLS-PLSNMT--GLNYLTVTESKVKDVTP--- 172
Query: 270 ASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPLNS 322
+ NLT L L+L+ N+++ S L +L + N+++ + P+ +
Sbjct: 173 ---IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQIT-DITPVAN 219
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 8e-11
Identities = 43/331 (12%), Positives = 97/331 (29%), Gaps = 66/331 (19%)
Query: 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL----------- 107
+ + D++ + + + ++ L L+ N S A+L+ + L
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 108 -------LTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDN 160
L+ L L+ + + +I+ + N++ + +++
Sbjct: 72 ETLDLESLSTLRTL--DLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNI---Y 126
Query: 161 INRNEFSGLIPSFIFNI-SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWS 219
+ N+ + L +++ L N T+ + L
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEID---------TVNFAELAASSDTLEHLN-- 175
Query: 220 DVSTTATIIAMGGNQISGTITLGIKKLIF-VNLYALTMVKNKLSGPIPHHIASSLGNLTL 278
+ N I +K + L L + NKL+ + +
Sbjct: 176 ----------LQYNFIY-----DVKGQVVFAKLKTLDLSSNKLA-----FMGPEFQSAAG 215
Query: 279 LTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLS-ASLPPLNSQHNHSFS-------- 329
+T+++L NNKL + +L + QNL + N +L S++ +
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274
Query: 330 CPGFEFSVIKLEFQIPGNKKLCGGLDELHLL 360
G + C L
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 35/249 (14%), Positives = 62/249 (24%), Gaps = 64/249 (25%)
Query: 73 IPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAI 132
I E R + + ++ + + N + +L LSG
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN-VKEL-----DLSG------------ 43
Query: 133 QVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGN 192
N L L+ L N++ N +L+ L N
Sbjct: 44 -------NPLSQISAADLAPFTKLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYVQ-- 93
Query: 193 LPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLY 252
L G + L A N IS +
Sbjct: 94 -------ELLVGPSIETLHAA------------------NNNIS-----RVSCSRGQGKK 123
Query: 253 ALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQG-NLPSSLGYYQNLMELSVSRN 311
+ + NK++ G + + YL L N++ N L L++ N
Sbjct: 124 NIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 312 KLSASLPPL 320
+ +
Sbjct: 180 FIY-DVKGQ 187
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 8e-11
Identities = 47/264 (17%), Positives = 84/264 (31%), Gaps = 33/264 (12%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL-LTKLF 112
+ +L+ + L N +G I K L L YL L+ N S + S L L
Sbjct: 325 LDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382
Query: 113 ICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFP-NTLSNLRSLFYDNINRNEFSGLIP 171
+ +F+G +Q + F+ ++L+ + +L L Y +I+
Sbjct: 383 LSFNGAIIMSANFMGLEE-LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441
Query: 172 SFIFN-ISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAM 230
SL + NSF N + L L +
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN--------L-TFLD------------L 480
Query: 231 GGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQ 290
Q+ L L L M N L S L L+ L N+++
Sbjct: 481 SKCQLEQISWGVFDTL--HRLQLLNMSHNNLLFLDS----SHYNQLYSLSTLDCSFNRIE 534
Query: 291 GNLPSSLGYYQNLMELSVSRNKLS 314
+ + ++L +++ N ++
Sbjct: 535 TSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 40/262 (15%), Positives = 83/262 (31%), Gaps = 17/262 (6%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
NF L++++L + L L L+L N P + S ++ L L
Sbjct: 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS-LENLVA 111
Query: 114 CETHLSGQLLDFIGNPSAIQVMIFKENSLEG-KFPNTLSNLRSLFYDNINRNEFSGLIPS 172
ET L+ IG ++ + N + K P SNL +L + +++ N + +
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171
Query: 173 FIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGG 232
+ + + N I +G +L ++ I+
Sbjct: 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK------LHELTLRGNFNSSNIMKTCL 225
Query: 233 NQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGN 292
++G + F + L + I L ++T+ L +
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEI--------FEPSIMEGLCDVTIDE-FRLTYTNDFSD 276
Query: 293 LPSSLGYYQNLMELSVSRNKLS 314
N+ +S++ +
Sbjct: 277 DIVKFHCLANVSAMSLAGVSIK 298
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 36/288 (12%), Positives = 74/288 (25%), Gaps = 46/288 (15%)
Query: 67 NNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANL------SHCSNLLTKLFICETHLSG 120
N I ++ + +L L L N S I H L+ F E +L
Sbjct: 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249
Query: 121 QLLDFIGNPSAIQVMIFK--ENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS 178
+ + + F+ + L ++ ++ + +
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LEDVPKHFK 308
Query: 179 LKWNFLPENSFTGNLPLEIGVTLP----------KGRNYYILLLAQKLYWSDVS------ 222
+ + L LP KG + + L + D+S
Sbjct: 309 WQSLSIIRCQLKQFPTL----DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF 364
Query: 223 -----------TTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIAS 271
+ + + N ++ L L L + L S
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGL--EELQHLDFQHSTLKRVTEF---S 418
Query: 272 SLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
+ +L L YL + + + +L L ++ N +
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 41/274 (14%), Positives = 82/274 (29%), Gaps = 25/274 (9%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
+ ++L + + E V + F+ + L + +L L L +
Sbjct: 282 HCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF----LKSLTL 335
Query: 114 CETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNL--RSLFYDNINRNEFSGLIP 171
S + PS + + N+L + S+L SL + +++ N +
Sbjct: 336 TMNKGS-ISFKKVALPS-LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA 393
Query: 172 SFIFNISLKWNFLPENSFTGNLPLEIGVTLPK------GRNYYILLLAQKLYWSDVSTTA 225
+F+ L+ ++ ++L K + T+
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL---TSL 450
Query: 226 TIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALD 285
+ M GN + NL L + K +L L L L +
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANT-TNLTFLDLSKCQLEQISW----GVFDTLHRLQLLNMS 505
Query: 286 NNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
+N L S +L L S N++ +
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 40/267 (14%), Positives = 90/267 (33%), Gaps = 16/267 (5%)
Query: 55 NFGYLRFINLVDNNFRGEIPEKV-GRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
L+ + L I ++ L L L L ++ + + L +L +
Sbjct: 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRL 104
Query: 114 CETHLSGQLL--DFIGNPSAIQVMIFKENSLEG-KFPNTLSNLRSLFYDNINRNEFSGLI 170
LS +L + N A+ + +N + + L SL + + N+ +
Sbjct: 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164
Query: 171 P---SFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATI 227
+ +L + L NS + ++ G + RN + + L S T I
Sbjct: 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL----EILDVSGNGWTVDI 220
Query: 228 IAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNN 287
N IS + + ++ + + + + L + + +L L +
Sbjct: 221 TGNFSNAISKSQAFSLILA--HHIMGAGFGFHNIKD-PDQNTFAGLARSS-VRHLDLSHG 276
Query: 288 KLQGNLPSSLGYYQNLMELSVSRNKLS 314
+ ++L L+++ NK++
Sbjct: 277 FVFSLNSRVFETLKDLKVLNLAYNKIN 303
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 55/278 (19%), Positives = 94/278 (33%), Gaps = 27/278 (9%)
Query: 58 YLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETH 117
+R ++L L L+ L LA N + KI + + L L +
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVL-----N 320
Query: 118 LSGQLLDFIGNPS-----AIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL-IP 171
LS LL + + + + + ++N + T L L ++ N + +
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI 380
Query: 172 SFIFNISLKWNF---LPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATII 228
I +I L N LP+ + T NL L Y LL L ++
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN------ 434
Query: 229 AMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHI-ASSLGNLTLLTYLALDNN 287
N+ S +L L + +N L + L+ L L L++N
Sbjct: 435 ---QNRFSSCSGDQTPSE-NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490
Query: 288 KLQGNLPSSLGYYQNLMELSVSRNKLSASLPPLNSQHN 325
L P + L LS++ N+L+ L + N
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPAN 527
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 48/309 (15%), Positives = 93/309 (30%), Gaps = 63/309 (20%)
Query: 54 GNFGYLRFINLVDNNFRGEIPE--KVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKL 111
G L+ I+ N + + L + LA N ++ + C N
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF--- 201
Query: 112 FICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNE------ 165
++ ++LD GN + + N++ +L + +
Sbjct: 202 ----RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257
Query: 166 --FSGLIPSFIFNISLKWN---FLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSD 220
F+GL S + ++ L L F L+ +L LA
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK------------VLNLA------- 298
Query: 221 VSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSG-PIPHHIASSLGNLTLL 279
N+I+ I F L L ++ LS + +S+ L +
Sbjct: 299 -----------YNKIN-----KIADEAFYGLDNLQVL--NLSYNLLGELYSSNFYGLPKV 340
Query: 280 TYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSA-----SLPPLNSQHNHSFSCPGFE 334
Y+ L N + + + + L L + N L+ S+P + N + P
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400
Query: 335 FSVIKLEFQ 343
+ +
Sbjct: 401 LTANLIHLS 409
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 68/365 (18%), Positives = 131/365 (35%), Gaps = 48/365 (13%)
Query: 55 NFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFIC 114
L+ +NL N E L L+ L L+ N ++ ++ + + + +
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQ 346
Query: 115 ETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFI 174
+ H++ +Q + ++N+L T+ + S+ ++ N+ L
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPK--- 398
Query: 175 FNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTA-------TI 227
N++ L EN L + +P + IL+L Q + S
Sbjct: 399 INLTANLIHLSENRLENLDILYFLLRVPHLQ---ILILNQNRFSSCSGDQTPSENPSLEQ 455
Query: 228 IAMGGNQISGTITLGIKKLIFVNLYALT---MVKNKLSGPIPHHIASSLGNLTLLTYLAL 284
+ +G N + + +F L L + N L+ +P + +LT L L+L
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS-LPPGV---FSHLTALRGLSL 511
Query: 285 DNNKLQGNLPSSLGYYQNLMELSVSRNKLSA----SLPPLNSQ--HNHSFSC----PGFE 334
++N+L + L NL L +SRN+L A L+ ++ F C F
Sbjct: 512 NSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFI 569
Query: 335 FSVIKLEFQIPGNKK--LCGG--------LDELHLLSCHSKESKRQTIKLLTMAISMILS 384
+ I G C L L C +E + L + ++ L+
Sbjct: 570 NWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLT 629
Query: 385 LFILS 389
LF+++
Sbjct: 630 LFLMT 634
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 45/274 (16%)
Query: 51 PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110
+ L+ ++ N P + L LE L +++N S + L+ +NL
Sbjct: 150 SALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNL-ES 203
Query: 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLI 170
L +S + +G + + + N L+ TL++L +L ++ N+ S L
Sbjct: 204 LIATNNQISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 259
Query: 171 PSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVS-------- 222
P L L N + PL L L ++
Sbjct: 260 P-LSGLTKLTELKLGANQISNISPLAGLTAL------------TNLELNENQLEDISPIS 306
Query: 223 --TTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLT 280
T + + N IS + L L L NK+S SSL NLT +
Sbjct: 307 NLKNLTYLTLYFNNISDIS--PVSSL--TKLQRLFFYNNKVSDV------SSLANLTNIN 356
Query: 281 YLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLS 314
+L+ +N++ + L + +L ++ +
Sbjct: 357 WLSAGHNQISD--LTPLANLTRITQLGLNDQAWT 388
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 65/285 (22%), Positives = 109/285 (38%), Gaps = 46/285 (16%)
Query: 51 PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110
+ N L I + +N P + L L L L NN + P L + +NL +
Sbjct: 84 TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNL-NR 138
Query: 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLI 170
L + +S + + +++Q + F + K L+ L L +I+ N+ S I
Sbjct: 139 LELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL---DISSNKVSD-I 192
Query: 171 PSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWS-----DVSTTA 225
+L+ N + PL I L +L + D+ T A
Sbjct: 193 SVLAKLTNLESLIATNNQISDITPLGILTNL------------DELSLNGNQLKDIGTLA 240
Query: 226 -----TIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLT 280
T + + NQIS + L L L + N++S P L LT LT
Sbjct: 241 SLTNLTDLDLANNQISNLA--PLSGLT--KLTELKLGANQISNISP------LAGLTALT 290
Query: 281 YLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPLNSQHN 325
L L+ N+L+ S + +NL L++ N +S + P++S
Sbjct: 291 NLELNENQLED--ISPISNLKNLTYLTLYFNNIS-DISPVSSLTK 332
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 54/276 (19%), Positives = 99/276 (35%), Gaps = 48/276 (17%)
Query: 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109
T + + + + + V L L + +NN + P L + + L
Sbjct: 39 TVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTK-LV 93
Query: 110 KLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL 169
+ + ++ + + N + + + N + + L NL +L ++ N S
Sbjct: 94 DILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD- 148
Query: 170 IPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIA 229
I + SL+ N T PL L +
Sbjct: 149 ISALSGLTSLQQLSF-GNQVTDLKPLA---NLTT---------------------LERLD 183
Query: 230 MGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKL 289
+ N++S L KL NL +L N++S P LG LT L L+L+ N+L
Sbjct: 184 ISSNKVSDISVLA--KL--TNLESLIATNNQISDITP------LGILTNLDELSLNGNQL 233
Query: 290 QGNLPSSLGYYQNLMELSVSRNKLSASLPPLNSQHN 325
+ +L NL +L ++ N++S +L PL+
Sbjct: 234 KD--IGTLASLTNLTDLDLANNQIS-NLAPLSGLTK 266
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 60/270 (22%), Positives = 100/270 (37%), Gaps = 48/270 (17%)
Query: 51 PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110
V L IN +N P + L +L +L+ NN + P L++ +NL T
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL-TG 116
Query: 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLI 170
L + ++ +D + N + + + N++ + LS L SL + +
Sbjct: 117 LTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD--L 170
Query: 171 PSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAM 230
+L+ + N + L L L + L
Sbjct: 171 KPLANLTTLERLDISSNKVSDISVLA---KLTN--------L-ESLI------------A 206
Query: 231 GGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQ 290
NQIS LGI NL L++ N+L +L +LT LT L L NN++
Sbjct: 207 TNNQISDITPLGI----LTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANNQIS 256
Query: 291 GNLPSSLGYYQNLMELSVSRNKLSASLPPL 320
+ L L EL + N++S ++ PL
Sbjct: 257 N--LAPLSGLTKLTELKLGANQIS-NISPL 283
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 7e-08
Identities = 52/281 (18%), Positives = 94/281 (33%), Gaps = 47/281 (16%)
Query: 51 PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110
+ L + +N P +G L L+ L L N L+ +NL T
Sbjct: 193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNL-TD 247
Query: 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLI 170
L + +S L + + + + N + P L+ L +L +N N+ +
Sbjct: 248 LDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 303
Query: 171 PSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAM 230
P +L + L N+ + P+ +L KL
Sbjct: 304 P-ISNLKNLTYLTLYFNNISDISPVS---SLT------------KLQRLFFY-------- 339
Query: 231 GGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQ 290
N++S +L N+ L+ N++S P L NLT +T L L++
Sbjct: 340 -NNKVSDVSSLANLT----NINWLSAGHNQISDLTP------LANLTRITQLGLNDQAWT 388
Query: 291 GNLPSSLGYYQNLMELSVSRNKLSASLPPLNSQHNHSFSCP 331
+ N+ + +N A + P S++ P
Sbjct: 389 NAPVNYK---ANVSIPNTVKNVTGALIAPATISDGGSYTEP 426
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 44/248 (17%), Positives = 73/248 (29%), Gaps = 47/248 (18%)
Query: 51 PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110
+ + L ++L +N P + L +L L L N S P L+ + L T
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL-TN 291
Query: 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLI 170
L + E L + I N + + N++ P +S+L L N+ S +
Sbjct: 292 LELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-V 346
Query: 171 PSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAM 230
S ++ W N + PL + T + +
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTPLANLTRI------------------------TQLGL 382
Query: 231 GGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQ 290
+ N+ VKN I S G+ T +
Sbjct: 383 NDQAWTN-----APVNYKANVSIPNTVKNVTGALIAPATISDGGSYT--------EPDIT 429
Query: 291 GNLPSSLG 298
NLPS
Sbjct: 430 WNLPSYTN 437
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 7e-10
Identities = 44/379 (11%), Positives = 102/379 (26%), Gaps = 66/379 (17%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL------ 107
N + + D++ + + + ++ L L+ N S A+L+ + L
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 108 ------------LTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRS 155
L+ L L+ + + +I+ + N++ + ++
Sbjct: 67 SNVLYETLDLESLSTLRTL--DLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKN 124
Query: 156 LFYDNINRNEFSGLIPSFIFNI-SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQ 214
+ + N+ + L +++ L N T+ +
Sbjct: 125 I---YLANNKITMLRDLDEGCRSRVQYLDLKLNEID---------TVNFAELAASSDTLE 172
Query: 215 KLYWSDVSTTATIIAMGGNQISGTITLGIKKLIF-VNLYALTMVKNKLSGPIPHHIASSL 273
L + N I +K + L L + NKL+ +
Sbjct: 173 HLN------------LQYNFIY-----DVKGQVVFAKLKTLDLSSNKLA-----FMGPEF 210
Query: 274 GNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP---------LNSQH 324
+ +T+++L NNKL + +L + QNL + N
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269
Query: 325 NHSFSCPGFEFSVIKLEFQIPGNKKLCGGLDELHLLSCHSKESKRQTIKLLTMAISMILS 384
G + C L + + K + + + L
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329
Query: 385 LFILSPSTVTNEFSSSNMI 403
+ + +
Sbjct: 330 CERENQARQREIDALKEQY 348
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 33/272 (12%), Positives = 76/272 (27%), Gaps = 6/272 (2%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
+ I L +N G R++YL L N A L+ S+ L L +
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 114 CETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSF 173
+ + + ++ + N L + + + ++ N+ + +
Sbjct: 177 QYNFIYD--VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKAL 233
Query: 174 IFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTA-TIIAMGG 232
F+ +L+ L N F + + + + + ++ T T+ G
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293
Query: 233 NQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGN 292
+LI + + G + N + + +
Sbjct: 294 YCCEDLPAPFADRLIALKRKEHAL--LSGQGSETERLECERENQARQREIDALKEQYRTV 351
Query: 293 LPSSLGYYQNLMELSVSRNKLSASLPPLNSQH 324
+ Q + L + L + H
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQVSNGRRAH 383
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 35/249 (14%), Positives = 62/249 (24%), Gaps = 64/249 (25%)
Query: 73 IPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAI 132
I E R + + ++ + + N + +L LSG
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN-VKEL-----DLSG------------ 43
Query: 133 QVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGN 192
N L L+ L N++ N +L+ L N
Sbjct: 44 -------NPLSQISAADLAPFTKLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYVQ-- 93
Query: 193 LPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLY 252
L G + L A N IS +
Sbjct: 94 -------ELLVGPSIETLHAA------------------NNNIS-----RVSCSRGQGKK 123
Query: 253 ALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQG-NLPSSLGYYQNLMELSVSRN 311
+ + NK++ G + + YL L N++ N L L++ N
Sbjct: 124 NIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 312 KLSASLPPL 320
+ +
Sbjct: 180 FIY-DVKGQ 187
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 39/287 (13%), Positives = 76/287 (26%), Gaps = 41/287 (14%)
Query: 66 DNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANL------SHCSNLLTKLFICETHLS 119
N I + RL L L NN S + L+ F E +L
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244
Query: 120 GQLLDFIGNPSAIQVMIFKENSLEG---KFPNTLSNLRSLFYDNINRNEFSGLIPSFIFN 176
+ + + F+ L+ + + L ++ ++ + F +N
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYN 303
Query: 177 ISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLA----------QKLYWSD-----V 221
+ L F P +L + + L S
Sbjct: 304 FGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362
Query: 222 STTA---------TIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASS 272
+ + + N + T++ L L L + L + S
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL--EQLEHLDFQHSNLKQ-MSEF--SV 416
Query: 273 LGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
+L L YL + + + +L L ++ N + P
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 9e-07
Identities = 37/287 (12%), Positives = 83/287 (28%), Gaps = 33/287 (11%)
Query: 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHL 118
L + L N + L L+ L+ + + + H L +L + +
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLI 136
Query: 119 -SGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYD----NINRNEFSGLIPSF 173
S +L ++ N + ++ + N ++ + L L + +++ N + + P
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 174 IFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGN 233
I L L N + N+ L + L + ++
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLA---GLEVHRLVLGEFRNE------------G 241
Query: 234 QISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNL 293
+ ++ L + + + I LT ++ +L + ++
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYY---LDDIIDLFNCLTNVSSFSLVSVTIERVK 298
Query: 294 PSSLGYYQNLMELSVSRNKLS-------ASLPPLNSQHNHSFSCPGF 333
S Y L + K SL L N +
Sbjct: 299 DFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 53/310 (17%), Positives = 101/310 (32%), Gaps = 29/310 (9%)
Query: 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHL 118
+ ++L N R L+ L L+ S+ L+ L + +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-LSTLILTGNPI 88
Query: 119 SGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFN-- 176
L S++Q ++ E +L + +L++L N+ N F+
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 177 ISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQIS 236
+L+ L N ++ + + D+S N ++
Sbjct: 149 TNLEHLDLSSNKIQ---------SIYCTDLRVLHQMPLLNLSLDLS---------LNPMN 190
Query: 237 GTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPS- 295
I G K I L+ LT+ N S + L L + L L + +GNL
Sbjct: 191 -FIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVH-RLVLGEFRNEGNLEKF 246
Query: 296 SLGYYQNLMELSVSRNKLSASLPPLNSQHNHSFSCPGF--EFSVIKLEFQIPGNKKLCGG 353
+ L L++ +L+ L F+C FS++ + + + G
Sbjct: 247 DKSALEGLCNLTIEEFRLA-YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305
Query: 354 LDELHLLSCH 363
L L++C
Sbjct: 306 WQHLELVNCK 315
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 41/311 (13%), Positives = 83/311 (26%), Gaps = 53/311 (17%)
Query: 49 LTPHVGNFGYLRFINLVDNNFRG---------------------------EIPEKVGRLF 81
L + N L ++L N + I +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200
Query: 82 RLEYLLLANNHFSGKIPANL------SHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVM 135
RL L L NN S + L+ F E +L + + +
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 136 IFKENSLEG---KFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGN 192
F+ L+ + + L ++ ++ + F +N + L F
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFG-Q 318
Query: 193 LPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLY 252
P +L + + + + + N +S G
Sbjct: 319 FPTLKLKSLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSRNGLS---FKGCCSQSDFGTT 373
Query: 253 ALTMV---KNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSS-LGYYQNLMELSV 308
+L + N + ++S+ L L +L ++ L+ S +NL+ L +
Sbjct: 374 SLKYLDLSFNGVI-----TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 309 SRNKLSASLPP 319
S
Sbjct: 429 SHTHTR-VAFN 438
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 45/270 (16%), Positives = 85/270 (31%), Gaps = 43/270 (15%)
Query: 55 NFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFIC 114
+ +LV + + F ++L L N F L L +L
Sbjct: 280 CLTNVSSFSLVSVTIE-RVKDFSY-NFGWQHLELVNCKFGQFPTLKLKS----LKRLTFT 333
Query: 115 ETHLSGQLLDFIGNPSAIQVMIFKENSLE--GKFPNTLSNLRSLFYDNINRNEFSGLIPS 172
+ PS ++ + N L G + SL Y +++ N + +
Sbjct: 334 SNKGGN-AFSEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391
Query: 173 FIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGG 232
F+ L+ ++ + ++L L + D+S
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN------------LIYLDIS---------H 430
Query: 233 NQISGTITLGIKKLIFVNLYALTMVK---NKLSGPIPHHIASSLGNLTLLTYLALDNNKL 289
IF L +L ++K N I L LT+L L +L
Sbjct: 431 THTRV-----AFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQL 482
Query: 290 QGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
+ P++ +L L+++ N+L S+P
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLK-SVPD 511
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 4e-09
Identities = 48/285 (16%), Positives = 79/285 (27%), Gaps = 28/285 (9%)
Query: 49 LTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL- 107
L P+ + D N R + + L +
Sbjct: 25 LRPYHDVLSQWQRHYNADRN-RWHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPG 82
Query: 108 LTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFS 167
L + L Q D S +Q M L + P+T+ L + RN
Sbjct: 83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140
Query: 168 GLIPSFIFN-ISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTA- 225
L P+ I + L+ + LP + T G + ++ L Q L +
Sbjct: 141 AL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL-QSLRLEWTGIRSL 198
Query: 226 ----------TIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGN 275
+ + + +S + I L L L + P G
Sbjct: 199 PASIANLQNLKSLKIRNSPLS-ALGPAIHHL--PKLEELDLRGCTALRNYP----PIFGG 251
Query: 276 LTLLTYLAL-DNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
L L L D + L LP + L +L + + LP
Sbjct: 252 RAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 45/276 (16%), Positives = 80/276 (28%), Gaps = 51/276 (18%)
Query: 47 KCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSN 106
+L+ + + E+P+ + + LE L LA N +PA+++ +
Sbjct: 94 PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNR 151
Query: 107 LLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEF 166
L +L I +L + + + A L NL+SL +
Sbjct: 152 L-RELSIRACPELTELPEPLASTDASGEH------------QGLVNLQSL---RLEWTGI 195
Query: 167 SGLIPSFIFN-ISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTA 225
L P+ I N +LK + + + L I KL D+
Sbjct: 196 RSL-PASIANLQNLKSLKIRNSPLSA-LGPAIH-------------HLPKLEELDLR--- 237
Query: 226 TIIAMGGNQISGTITLGIKKLIFVNLYALTMV-KNKLSGPIPHHIASSLGNLTLLTYLAL 284
G + L L + + L + + LT L L L
Sbjct: 238 -----GCTALR-NYPPIFGGR--APLKRLILKDCSNLL-----TLPLDIHRLTQLEKLDL 284
Query: 285 DNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL 320
LPS + + V + +
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 28/200 (14%), Positives = 54/200 (27%), Gaps = 33/200 (16%)
Query: 120 GQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNISL 179
G + S + + F+ ++ + + LS + + + NR + N +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNN 57
Query: 180 KWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTI 239
+ L +
Sbjct: 58 PQIETRTGRALKATADLLE--------DATQPGRVALELR------------SVPLP-QF 96
Query: 240 TLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGY 299
+L +L +T+ L +P ++ L L L N L+ LP+S+
Sbjct: 97 PDQAFRL--SHLQHMTIDAAGLME-LP----DTMQQFAGLETLTLARNPLR-ALPASIAS 148
Query: 300 YQNLMELSVSRNKLSASLPP 319
L ELS+ LP
Sbjct: 149 LNRLRELSIRACPELTELPE 168
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 9e-06
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 5/158 (3%)
Query: 46 NKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCS 105
+ + L+ + L R +P + L L+ L + N+ S + + H
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229
Query: 106 NLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNE 165
L +L + G + ++ +I K+ S P + L L ++
Sbjct: 230 KL-EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288
Query: 166 FSGLIPSFIFNI-SLKWNFLPENSFTGNLPLEIGVTLP 202
+PS I + + +P + L V P
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPH-LQAQLDQHRPVARP 325
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 44/126 (34%)
Query: 394 TNEFSSSNMIGQGSFGSVYKGIL-----------------GEK-WTA------------- 422
TN F +IG G FG VYKG+L G + +
Sbjct: 38 TNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHL 97
Query: 423 ----GY-SEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVA 477
G+ E + +++ YM+N +L+ Y S+ +S ++L I A
Sbjct: 98 VSLIGFCDER------NEMILIYKYMENGNLKRHLYGSDLPTMS--MSWEQRLEICIGAA 149
Query: 478 SAIEYL 483
+ YL
Sbjct: 150 RGLHYL 155
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 49/266 (18%), Positives = 86/266 (32%), Gaps = 49/266 (18%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKV-GRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLF 112
+F + +NL D EI ++ L + N +P ++ LLT L
Sbjct: 66 DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 123
Query: 113 ICE---THLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL 169
+ + L + F P + + N+LE +T SL ++ N +
Sbjct: 124 LERNDLSSLPRGI--FHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH- 179
Query: 170 IPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIA 229
+ + SL + N + TL L +
Sbjct: 180 VDLSLIP-SLFHANVSYNLLS---------TLAIPIAVEELDAS---------------- 213
Query: 230 MGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKL 289
N I+ ++ + V L L + N L+ + L N L + L N+L
Sbjct: 214 --HNSINV-----VRGPVNVELTILKLQHNNLTDT------AWLLNYPGLVEVDLSYNEL 260
Query: 290 QGNLPSSLGYYQNLMELSVSRNKLSA 315
+ + Q L L +S N+L A
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLVA 286
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 48/275 (17%), Positives = 88/275 (32%), Gaps = 60/275 (21%)
Query: 59 LRFINLVDNNFRGEIPEKV-GRLFRLEYLLLANNHFSGKIPA------------NLSHCS 105
L + L N+ +P + +L L ++NN+ +I LS
Sbjct: 119 LTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR 176
Query: 106 ------NLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYD 159
+L+ LF ++S LL + P A++ + NS+ L L
Sbjct: 177 LTHVDLSLIPSLF--HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL--- 231
Query: 160 NINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWS 219
+ N + + L L N + V + + ++LY
Sbjct: 232 KLQHNNLTD-TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQR---------LERLY-- 278
Query: 220 DVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLL 279
+ N++ + L + + L L + N L H+ + L
Sbjct: 279 ----------ISNNRLV-ALNLYGQPI--PTLKVLDLSHNHLL-----HVERNQPQFDRL 320
Query: 280 TYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLS 314
L LD+N + L L + L L++S N
Sbjct: 321 ENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 56/264 (21%), Positives = 90/264 (34%), Gaps = 43/264 (16%)
Query: 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHL 118
L ++ + +N ++PE + L+ + + NN K+P L + L
Sbjct: 133 LEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPS----LEFIAAGNNQL 185
Query: 119 SGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS 178
L + N + + NSL+ K P+ +L S+ N +P
Sbjct: 186 EE--LPELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILE-ELPELQNLPF 238
Query: 179 LKWNFLPENSFTGNLPLEIG--VTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQIS 236
L + N LP L NY L ++ + T + + N S
Sbjct: 239 LTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL-------PELPQSLTFLDVSENIFS 290
Query: 237 GTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSS 296
G + +L NLY L N++ S L L + NNKL LP+
Sbjct: 291 G-----LSELP-PNLYYLNASSNEIR--------SLCDLPPSLEELNVSNNKLI-ELPAL 335
Query: 297 LGYYQNLMELSVSRNKLSASLPPL 320
L L S N L+ +P L
Sbjct: 336 PP---RLERLIASFNHLA-EVPEL 355
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 55/280 (19%), Positives = 92/280 (32%), Gaps = 57/280 (20%)
Query: 49 LTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL- 107
+ P + +L+ +N E+P + + A + + P +
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 108 LTKLFICET------HLSGQLLDFI-GNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDN 160
+++L C L+ L + P ++ ++ NSL + P +L+SL DN
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDN 120
Query: 161 INRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSD 220
N S L P L++ + N LP+ +N L
Sbjct: 121 NNLKALSDLPP------LLEYLGVSNNQLE---------KLPELQNSSFL---------- 155
Query: 221 VSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLT 280
II + N + L +L + N+L L NL LT
Sbjct: 156 -----KIIDVDNNSLKKLPDL------PPSLEFIAAGNNQLEEL------PELQNLPFLT 198
Query: 281 YLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL 320
+ DNN L+ LP +L + N L LP L
Sbjct: 199 AIYADNNSLK-KLPDLPL---SLESIVAGNNILE-ELPEL 233
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 53/305 (17%), Positives = 87/305 (28%), Gaps = 61/305 (20%)
Query: 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHL 118
L FI +N E+PE + L L + NN K+P L + L
Sbjct: 175 LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLS----LESIVAGNNIL 227
Query: 119 SGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS 178
L + N + + N L+ P+ +L +L + + L S
Sbjct: 228 E--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQS------ 278
Query: 179 LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGT 238
L + + EN F+ L LP Y + D+ + + + N++
Sbjct: 279 LTFLDVSENIFS-GLS-----ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-E 331
Query: 239 ITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLG 298
+ +L + N L+ + NL L ++ N L+ P
Sbjct: 332 LPALPPRLERLIAS-----FNHLA-----EVPELPQNLK---QLHVEYNPLR-EFPDIPE 377
Query: 299 Y----------------YQNLMELSVSRNKLSASLPP-------LNSQHNHSFSCPGFEF 335
QNL +L V N L P L F
Sbjct: 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDLRMNSERVVDPYEFAH 436
Query: 336 SVIKL 340
Sbjct: 437 ETTDK 441
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 49/266 (18%), Positives = 86/266 (32%), Gaps = 49/266 (18%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKV-GRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLF 112
+F + +NL D EI ++ L + N +P ++ LLT L
Sbjct: 72 DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 129
Query: 113 ICE---THLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL 169
+ + L + F P + + N+LE +T SL ++ N +
Sbjct: 130 LERNDLSSLPRGI--FHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH- 185
Query: 170 IPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIA 229
+ + SL + N + TL L +
Sbjct: 186 VDLSLIP-SLFHANVSYNLLS---------TLAIPIAVEELDAS---------------- 219
Query: 230 MGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKL 289
N I+ ++ + V L L + N L+ + L N L + L N+L
Sbjct: 220 --HNSINV-----VRGPVNVELTILKLQHNNLTDT------AWLLNYPGLVEVDLSYNEL 266
Query: 290 QGNLPSSLGYYQNLMELSVSRNKLSA 315
+ + Q L L +S N+L A
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLVA 292
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 8e-06
Identities = 45/257 (17%), Positives = 87/257 (33%), Gaps = 48/257 (18%)
Query: 59 LRFINLVDNNFRGEIPEKVGR-LFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETH 117
L +++ +NN I + + L+ L L++N + + +L + LF +
Sbjct: 149 LTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL------IPSLF--HAN 198
Query: 118 LSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNI 177
+S LL + P A++ + NS+ L L + N + +
Sbjct: 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNLTD-TAWLLNYP 254
Query: 178 SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISG 237
L L N + V + + ++LY + N++
Sbjct: 255 GLVEVDLSYNELE-KIMYHPFVKMQR---------LERLY------------ISNNRLV- 291
Query: 238 TITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSL 297
+ L + + L L + N L H+ + L L LD+N + L L
Sbjct: 292 ALNLYGQPI--PTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLDHNSIV-TLK--L 341
Query: 298 GYYQNLMELSVSRNKLS 314
+ L L++S N
Sbjct: 342 STHHTLKNLTLSHNDWD 358
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 45/324 (13%), Positives = 105/324 (32%), Gaps = 62/324 (19%)
Query: 4 HLALLAIKSLLHDRRGVTSSWSNSIDLCQWRGVTCTHQHQRINKCLTPHVGNFGYLRFIN 63
L + LL R + D C G+ + + V +R ++
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV-TIRRLH 292
Query: 64 LVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPA------------NLSHCSNLLTKL 111
+ ++ L +++ + + N+ +P +LS NL+ +
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE--NLMVEE 349
Query: 112 FICETHLSGQLLDFIGNPSAIQVMIFKENSLE--GKFPNTLSNLRSLFYDNINRNEFSGL 169
++ + G ++Q ++ +N L K L L++L +I+RN F +
Sbjct: 350 YLKNSA-------CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402
Query: 170 IPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIA 229
S + +++ L + I TL ++
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTL------------------------EVLD 437
Query: 230 MGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKL 289
+ N + + +L + +L + + +NKL +P +L + + N+L
Sbjct: 438 VSNNNLD-SFSLFLPRLQELYIS-----RNKLKT-LP-----DASLFPVLLVMKISRNQL 485
Query: 290 QGNLPSSLGYYQNLMELSVSRNKL 313
+ +L ++ + N
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 34/263 (12%), Positives = 83/263 (31%), Gaps = 20/263 (7%)
Query: 59 LRFINLVDNNFRGEIPEKV-GRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETH 117
L+ + + + EI L L L + +L ++ L + +
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI-HHLTLHLSE 183
Query: 118 LSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLS---NLRSLFYDNINRNEFSGLIPSFI 174
+ L F S+++ + ++ +L + L + + + + +
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243
Query: 175 FNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQ 234
+ L E F +G + + L + T + +
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLG-DFNPSESDVVSELG-----KVETVTIRRLHIPQFY 297
Query: 235 ISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNL- 293
+ ++ L + +T+ +K+ +P + L +L +L L N +
Sbjct: 298 LFYDLSTVYSLLE--KVKRITVENSKVFL-VPCSFSQHLKSLE---FLDLSENLMVEEYL 351
Query: 294 --PSSLGYYQNLMELSVSRNKLS 314
+ G + +L L +S+N L
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLR 374
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 43/275 (15%), Positives = 95/275 (34%), Gaps = 17/275 (6%)
Query: 58 YLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSG-KIPANLSHCSNLLTKLFICET 116
L ++L DN+ G L L+YL L N + + + + +NL L I
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL-QTLRIGNV 133
Query: 117 HLSGQLL-DFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIF 175
++ +++ + K SL +L ++R + + ++ +E + +
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFA 192
Query: 176 NI--SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGN 233
+I S+++ L + + + V + +KL + T
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVD-------EVSSPMKKLAFRGSVLTDESFNELLK 245
Query: 234 QISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNL 293
+ + L + L L S + + +T+ L + L +L
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE--LGKVETVTI-RRLHIPQFYLFYDL 302
Query: 294 PSSLGYYQNLMELSVSRNKLSASLPPLNSQHNHSF 328
+ + + ++V +K+ +P SQH S
Sbjct: 303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSL 336
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 45/303 (14%), Positives = 90/303 (29%), Gaps = 70/303 (23%)
Query: 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHL 118
+ + + DNN +P L L ++ N + +P L + THL
Sbjct: 63 ITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVLPPGLLEL-SIFSNPLTHL 116
Query: 119 SGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS 178
PS + + N L P L+ L + L
Sbjct: 117 PAL-------PSGLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLASLPALPSE------ 162
Query: 179 LKWNFLPENSFTGNLPLEIG------------VTLPKGRNYYILLLAQKLYWSDVSTTA- 225
L + N T +LP+ +LP L KL+ + T+
Sbjct: 163 LCKLWAYNNQLT-SLPMLPSGLQELSVSDNQLASLPTL----PSEL-YKLWAYNNRLTSL 216
Query: 226 -------TIIAMGGNQISGTITLGIKKLIFVNLY---------------ALTMVKNKLSG 263
+ + GN+++ ++ + +L + + +L++ +N+L+
Sbjct: 217 PALPSGLKELIVSGNRLT-SLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT- 274
Query: 264 PIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPLNSQ 323
+ SL +L+ T + L+ N L + + + S
Sbjct: 275 ----RLPESLIHLSSETTVNLEGNPLS-ERTLQA--LREITSAPGYSGPIIRFDMAGASA 327
Query: 324 HNH 326
Sbjct: 328 PRE 330
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 39/124 (31%)
Query: 394 TNEFSSSNMIGQGSFGSVYKGILGE-------KWTAGYSEGTDFKGIDFKA--------- 437
++ FS+ N++G+G FG VYKG L + + ++G + + F+
Sbjct: 29 SDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGE---LQFQTEVEMISMAV 85
Query: 438 ------------------VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASA 479
+V+ YM N S+ + P L ++ + A
Sbjct: 86 HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPP--LDWPKRQRIALGSARG 143
Query: 480 IEYL 483
+ YL
Sbjct: 144 LAYL 147
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 50/279 (17%), Positives = 100/279 (35%), Gaps = 21/279 (7%)
Query: 59 LRFINLVDNNFRGEIPEK--VGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICET 116
L+ ++L N F +P G + +L++L L+ H ++H + L + ET
Sbjct: 92 LKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150
Query: 117 HLSGQLLDF----------IGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEF 166
+ + + I P+ + + S++ LSN++ + DN
Sbjct: 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210
Query: 167 SGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILL----LAQKLYWSDVS 222
S L N L L T N + I + +Y + L +L + D
Sbjct: 211 SIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269
Query: 223 TTATII-AMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTY 281
+ T + A+ +Q+ + + I+ + + +SG ++ +
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG-TRMVHMLCPSKISPFLH 328
Query: 282 LALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL 320
L NN L + + G+ L L + N+L L +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKI 366
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 37/280 (13%), Positives = 84/280 (30%), Gaps = 37/280 (13%)
Query: 40 HQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPA 99
++ + L V L N+ + + L +L+ N S
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT----NPKLSNLTLN 228
Query: 100 NLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYD 159
N+ N ++ H + + F + ++L++L
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFSISNVK-------LQGQLDFRDFDYSGTSLKALSIH 281
Query: 160 NINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWS 219
+ + F S+I+ I N + +G + +
Sbjct: 282 QVVSDVFG-FPQSYIYEIFSNMNIK-NFTVSGTRMVHMLC-------------------P 320
Query: 220 DVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLL 279
+ + N ++ T+ L L L + N+L + IA + L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHL--TELETLILQMNQLKE-LSK-IAEMTTQMKSL 376
Query: 280 TYLALDNNKLQGNLPSSL-GYYQNLMELSVSRNKLSASLP 318
L + N + + + ++L+ L++S N L+ ++
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 46/287 (16%), Positives = 91/287 (31%), Gaps = 52/287 (18%)
Query: 59 LRFINLVDNNFRGEIPEKV-GRLFRLEYLLLANNHFSGKIPAN-LSHCSNLLTKLFICET 116
L+F+ + I L L L L N F ++ + +NL L + +
Sbjct: 56 LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANL-EVLTLTQC 113
Query: 117 HLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFN 176
+L G +L F L++L L + N + P+ F
Sbjct: 114 NLDGAVLS------------------GNFFKP-LTSLEML---VLRDNNIKKIQPASFFL 151
Query: 177 -------ISL---KWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWS-----DV 221
+ L K + E N + L + L W
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLL-NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210
Query: 222 STTATIIAMGGNQISGTITLGIKKLIFVN-LYALTMVKNKLSG-PIPHHIASSLGNLTL- 278
+T+ T + + GN ++ I + +L + + G H N T
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 279 ------LTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
+ L +K+ L S ++ +L +L++++N+++ +
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDD 316
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 52/266 (19%), Positives = 92/266 (34%), Gaps = 70/266 (26%)
Query: 55 NFGYLRFINLVDNNFRGEIPEKV-GRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
+L + LV+N +I EK L +L+ L ++ NH +IP NL
Sbjct: 76 GLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL------------ 121
Query: 114 CETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL-IPS 172
PS++ + +N + S LR++ + N
Sbjct: 122 ---------------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166
Query: 173 FIF-NISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMG 231
F + L + + E T +P ++ TL +L+ +
Sbjct: 167 GAFDGLKLNYLRISEAKLT-GIPKDLPETL------------NELH------------LD 201
Query: 232 GNQISGTITLGIKKLIFVNLYALTMVK---NKLSGPIPHHIASSLGNLTLLTYLALDNNK 288
N+I I+ + L + N++ I + SL L L L LDNNK
Sbjct: 202 HNKIQ-----AIELEDLLRYSKLYRLGLGHNQIRM-IENG---SLSFLPTLRELHLDNNK 252
Query: 289 LQGNLPSSLGYYQNLMELSVSRNKLS 314
L +P+ L + L + + N ++
Sbjct: 253 LS-RVPAGLPDLKLLQVVYLHTNNIT 277
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 54/290 (18%), Positives = 95/290 (32%), Gaps = 61/290 (21%)
Query: 59 LRFINLVDNNFRGEIPEKV-GRLFRLEYLLLANNHFSGKIPAN-LSHCSNLLTKLFICET 116
++L +N+ E+ + L L L+L NN S KI S L KL
Sbjct: 56 TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKL-QKL----- 107
Query: 117 HLSGQLLDFI--GNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL-IPSF 173
++S L I PS++ + +N + S LR++ + N
Sbjct: 108 YISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167
Query: 174 IF-NISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSD-----VSTTA-- 225
F + L + + E T +P ++ TL +L+ +
Sbjct: 168 AFDGLKLNYLRISEAKLT-GIPKDLPETL------------NELHLDHNKIQAIELEDLL 214
Query: 226 -----TIIAMGGNQISGTITLGIKKLIFVNLYALT---MVKNKLSGPIPHHIASSLGNLT 277
+ +G NQI I+ L L + NKLS + + L +L
Sbjct: 215 RYSKLYRLGLGHNQIRM-----IENGSLSFLPTLRELHLDNNKLS-----RVPAGLPDLK 264
Query: 278 LLTYLALDNNKLQGNLPSS-------LGYYQNLMELSVSRNKLS-ASLPP 319
LL + L N + + + +S+ N + + P
Sbjct: 265 LLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 55/266 (20%), Positives = 94/266 (35%), Gaps = 53/266 (19%)
Query: 59 LRFINLVDNNFRGEIPEKV-GRLFRLEYLLLANNHFSGKIPAN-LSHCSNLLTKLFICET 116
++L +N EI + L L L+L NN S KI + L +L
Sbjct: 54 TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKL-ERL----- 105
Query: 117 HLSGQLLDFI--GNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEF-SGLIPSF 173
+LS L + P +Q + EN + + + L + + N S I +
Sbjct: 106 YLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 174 IFN--ISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLA--QKLYWSDVSTTATIIA 229
F L + + + + T T+P+G L +L+
Sbjct: 166 AFQGMKKLSYIRIADTNIT---------TIPQG------LPPSLTELH------------ 198
Query: 230 MGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHI-ASSLGNLTLLTYLALDNNK 288
+ GN+I+ + L L + LS + SL N L L L+NNK
Sbjct: 199 LDGNKITK-----VDAASLKGLNNLAKLG--LSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 289 LQGNLPSSLGYYQNLMELSVSRNKLS 314
L +P L ++ + + + N +S
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNIS 276
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 9e-06
Identities = 57/280 (20%), Positives = 98/280 (35%), Gaps = 35/280 (12%)
Query: 55 NFGYLRFINLVDNNFRGEIPEKV-GRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113
+F +L + L +N + LF L L L +N IP + + LTKL I
Sbjct: 54 SFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDI 111
Query: 114 CETHLSGQLLD--FIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIP 171
E + LLD F + ++ + +N L S L SL + + + IP
Sbjct: 112 SENKIV-ILLDYMFQDLYN-LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIP 168
Query: 172 SFIFN--ISLKWNFLPENSFTGNLPLEIGVTLPKG-RNYYILLLAQKLYWSDVSTTA--- 225
+ + L L + I K +L ++ Y ++
Sbjct: 169 TEALSHLHGLIVLRLRHLNIN-----AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223
Query: 226 ---TIIAMGGNQISGTITLGIKKLIFVNLYALTMV---KNKLSGPIPHHIASSLGNLTLL 279
T +++ ++ + L +L L + N +S I S L L L
Sbjct: 224 LNLTSLSITHCNLT-----AVPYLAVRHLVYLRFLNLSYNPIST-IE---GSMLHELLRL 274
Query: 280 TYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
+ L +L P + L L+VS N+L+ +L
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEE 313
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 41/269 (15%), Positives = 86/269 (31%), Gaps = 54/269 (20%)
Query: 59 LRFINLVDNNFRGEIPEKV-GRLFRLEYLLLANNHFSGKIPAN-LSHCSNLLTKLFICET 116
L +++ +N + + + L+ L+ L + +N I S ++L +L
Sbjct: 106 LTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSL-EQL----- 157
Query: 117 HLSGQLLDFIGNPS-----AIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIP 171
L L I + + V+ + ++ + L L I+ + +
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217
Query: 172 SFIF-NISLKWNFLPENSFTGNLPLEIGVTLPKG--RNYYILLLAQKLYWSDVSTTATII 228
++L + + T +P R+ L + L
Sbjct: 218 PNCLYGLNLTSLSITHCNLT---------AVPYLAVRHLVYL---RFLN----------- 254
Query: 229 AMGGNQISGTITLGIKKLIF---VNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALD 285
+ N IS I+ + + L + +V +L+ + + L L L +
Sbjct: 255 -LSYNPIST-----IEGSMLHELLRLQEIQLVGGQLAV-VE---PYAFRGLNYLRVLNVS 304
Query: 286 NNKLQGNLPSSLGYYQNLMELSVSRNKLS 314
N+L S NL L + N L+
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSNPLA 333
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 9e-06
Identities = 21/123 (17%), Positives = 34/123 (27%), Gaps = 40/123 (32%)
Query: 394 TNEFSSSNMIGQGSFGSVYKGILGEK--------------WTA----------------- 422
+ +IG+G +G+VYKG L E+ +
Sbjct: 12 LDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIAR 71
Query: 423 --GYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAI 480
E G +V +Y N SL + L + + V +
Sbjct: 72 FIVGDERVTADGRMEYLLVMEYYPNGSLXKY-------LSLHTSDWVSSCRLAHSVTRGL 124
Query: 481 EYL 483
YL
Sbjct: 125 AYL 127
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 226 TIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALD 285
+ + + I L NL L ++ ++ +L LT LT L +
Sbjct: 69 KDLTINNIHAT-NYN-PISGL--SNLERLRIMGKDVTSDKI----PNLSGLTSLTLLDIS 120
Query: 286 NNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPLNSQHN 325
++ ++ + + + + +S N + PL +
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE 160
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 43/279 (15%), Positives = 75/279 (26%), Gaps = 39/279 (13%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL--LTKL 111
G + VD + + L+ L + +I + L +L
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 112 FICETHLSGQLLDFIGN--PSAIQVMIFKENSLEGK-------FPNTLSNLRSLFYDNIN 162
+ ++G + + ++ + S + L+ L +I
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL---SIA 157
Query: 163 RNEFSGLIPSFIFNI-SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDV 221
+ + +L L +N G L + K +L L
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN------- 210
Query: 222 STTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTY 281
G SG + V L L + N L A S + L
Sbjct: 211 --------AGMETPSGVCSALAAAR--VQLQGLDLSHNSLRDAAG---APSCDWPSQLNS 257
Query: 282 LALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL 320
L L L+ +P L L L +S N+L P
Sbjct: 258 LNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLD-RNPSP 292
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 27/182 (14%), Positives = 46/182 (25%), Gaps = 23/182 (12%)
Query: 149 TLSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYY 208
+S L+ L + E +G P + L + L + + +
Sbjct: 93 GISGLQEL---TLENLEVTGTAPPPLLE--ATGPDLNILNLRNVSWATRDAWLAELQQWL 147
Query: 209 ILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHH 268
L + L + + F L L + N G
Sbjct: 148 KPGL-KVLSIAQAHSLNFSCEQVRV--------------FPALSTLDLSDNPELGERGLI 192
Query: 269 IASSLGNLTLLTYLALDNNKLQ---GNLPSSLGYYQNLMELSVSRNKLSASLPPLNSQHN 325
A L LAL N ++ G + L L +S N L + +
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252
Query: 326 HS 327
Sbjct: 253 SQ 254
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 46/225 (20%), Positives = 74/225 (32%), Gaps = 40/225 (17%)
Query: 98 PANLSHCSNLLTKLFICETHLSGQLLDFI--GNPSAIQVMIFKENSLEGKFPNTLSNLRS 155
P ++ + + L + P ++ EN L TL
Sbjct: 2 PICEVSKVASHLEV-----NCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTR 56
Query: 156 LFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQK 215
L N++R E + L L L N +LP LL Q
Sbjct: 57 LTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQ---------SLP--------LLGQT 98
Query: 216 LYWSDVSTTATIIAMGGNQISGTITLGI-KKLIFVNLYALTMVKNKLSGPIPHHIASSLG 274
L T++ + N+++ ++ LG + L L L + N+L +P L
Sbjct: 99 L------PALTVLDVSFNRLT-SLPLGALRGL--GELQELYLKGNELKT-LP---PGLLT 145
Query: 275 NLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
L L+L NN L L +NL L + N L ++P
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 45/286 (15%), Positives = 85/286 (29%), Gaps = 53/286 (18%)
Query: 43 QRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLS 102
R + L N +P+ + ++ L + N +P +
Sbjct: 45 NRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPA 100
Query: 103 HCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNIN 162
L L C+ LS L + + ++ + N L P + L + N +
Sbjct: 101 S----LEYLDACDNRLS-TLPELPAS---LKHLDVDNNQLT-MLPELPALLEYI---NAD 148
Query: 163 RNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVS 222
N+ + L P + L+ + N T LP L DVS
Sbjct: 149 NNQLTML-PELPTS--LEVLSVRNNQLTF-LPELPE----------------SLEALDVS 188
Query: 223 TTATIIAMGGNQISGTITLGIKKLIF--VNLYALTMVKNKLSGPIPHHIASSLGNLTLLT 280
N + ++ + +N+++ HI ++ +L
Sbjct: 189 ---------TNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-----HIPENILSLDPTC 233
Query: 281 YLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPLNSQHNH 326
+ L++N L + SL + R S S N+ H
Sbjct: 234 TIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 6e-05
Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 41/123 (33%)
Query: 394 TNEFSSSNMIGQGSFGSVYKGILGEKWTA------------------------------- 422
+ + +G FG V+K L ++ A
Sbjct: 23 SMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQ 82
Query: 423 --GYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAI 480
G + +D ++ + + SL D+ LK + +S +A +
Sbjct: 83 FIGAEKRGTSVDVDL-WLITAFHEKGSLSDF-------LKANVVSWNELCHIAETMARGL 134
Query: 481 EYL 483
YL
Sbjct: 135 AYL 137
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 43/285 (15%), Positives = 89/285 (31%), Gaps = 27/285 (9%)
Query: 54 GNFGYLRFINLVDNNFRGEIPEKV--GRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKL 111
LR ++L N+F +P G L +L +L L+ F ++H L
Sbjct: 118 CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILL 176
Query: 112 FICETHLS-GQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSN------LRSLFYDNINRN 164
+ H+ G+ + + ++F NSL N N L ++ ++ N
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236
Query: 165 EFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGR----NYYILLLAQKLYWSD 220
+ +L L T +++ N Y L + +++ +
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296
Query: 221 VSTTATIIA------MGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLG 274
+ + T + + + +N+ L++ I S
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF---IHMVCPPSPS 353
Query: 275 NLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPP 319
+ T +L N ++ + L L + RN L +
Sbjct: 354 SFT---FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFK 394
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 29/159 (18%)
Query: 18 RGVTSSWSNSIDLCQWRGVTCTHQHQRI----NKCLT--PHVGNFGYLRFINLVDNNFRG 71
R S L + + + R+ +K LT H+ + ++L N R
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR- 476
Query: 72 EIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSG----------- 120
+P + L LE L ++N + +++ L +L +C L
Sbjct: 477 ALPPALAALRCLEVLQASDNALE-NVD-GVANLPR-LQELLLCNNRLQQSAAIQPLVSCP 533
Query: 121 --QLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLF 157
LL+ GN + +E ++ + L ++ S+
Sbjct: 534 RLVLLNLQGNS------LCQEEGIQERLAEMLPSVSSIL 566
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 7e-04
Identities = 28/131 (21%), Positives = 38/131 (29%), Gaps = 42/131 (32%)
Query: 392 TVTNEFSS------SNMIGQGSFGSVYKGILGEKWTA--GYSEGTDFKGI----DFKA-- 437
VTN F N +G+G FG VYKG + A + D F
Sbjct: 22 NVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEI 81
Query: 438 -------------------------VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLST 472
+V+ YM N SL D + LS +
Sbjct: 82 KVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGT---PPLSWHMRCKI 138
Query: 473 TIDVASAIEYL 483
A+ I +L
Sbjct: 139 AQGAANGINFL 149
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 549 | |||
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.98 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.98 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.98 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.98 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.97 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.97 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.97 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.97 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.97 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.97 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.97 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.97 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.97 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.97 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.97 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.96 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.96 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.96 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.96 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.96 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.96 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.95 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.94 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.94 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.93 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.92 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.92 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.91 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.91 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.9 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.9 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.9 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.89 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.89 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.89 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.88 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.88 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.87 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.86 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.86 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.86 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.85 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.85 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.84 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.83 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 99.83 | |
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.83 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 99.82 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.82 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 99.82 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.82 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.8 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.8 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.79 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.78 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.78 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.78 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.78 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.76 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.75 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.75 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.75 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.75 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.73 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.73 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.73 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.72 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.71 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.71 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.71 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.69 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.69 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.69 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.69 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.67 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.67 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.66 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.66 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 99.65 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.64 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 99.63 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.63 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 99.63 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.61 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.6 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.6 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 99.6 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.57 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 99.57 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.57 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.57 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 99.56 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.56 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 99.55 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 99.55 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 99.54 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.54 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 99.53 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.52 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 99.52 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 99.52 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 99.51 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 99.51 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 99.51 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.51 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 99.5 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 99.5 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.5 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 99.5 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 99.49 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.49 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 99.49 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 99.48 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 99.48 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 99.48 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 99.48 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.47 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 99.47 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 99.47 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 99.47 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 99.47 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 99.47 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.46 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 99.46 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 99.46 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 99.46 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 99.45 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.45 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 99.45 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.45 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 99.45 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 99.45 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.45 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 99.45 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 99.45 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.45 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 99.44 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 99.44 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 99.44 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 99.43 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 99.43 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 99.42 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 99.42 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 99.42 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 99.41 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 99.41 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.41 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 99.41 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 99.41 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 99.41 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.4 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 99.4 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 99.4 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 99.4 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 99.4 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 99.4 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 99.39 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 99.39 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 99.39 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 99.39 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 99.39 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 99.39 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 99.39 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 99.39 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 99.39 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 99.38 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 99.38 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 99.38 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 99.38 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 99.37 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.37 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 99.37 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 99.37 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 99.37 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 99.36 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 99.35 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 99.35 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 99.35 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 99.35 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 99.35 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 99.34 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 99.34 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 99.34 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.33 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.33 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 99.33 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 99.33 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 99.33 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 99.33 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 99.33 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.33 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 99.32 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 99.32 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 99.31 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 99.31 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 99.31 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 99.3 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 99.3 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.3 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 99.3 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 99.29 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 99.28 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 99.28 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 99.28 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 99.28 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.28 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 99.27 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 99.27 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 99.27 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 99.27 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 99.27 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 99.27 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 99.27 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.27 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 99.26 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 99.26 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 99.26 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 99.26 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 99.26 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 99.26 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 99.26 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 99.25 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 99.25 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 99.25 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 99.25 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 99.25 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 99.24 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 99.24 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 99.24 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 99.24 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 99.24 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.23 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 99.23 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 99.23 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 99.23 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 99.23 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 99.23 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 99.23 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 99.23 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 99.23 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 99.22 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 99.22 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 99.22 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 99.22 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 99.21 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 99.21 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 99.21 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 99.21 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 99.2 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 99.2 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 99.2 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 99.2 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 99.2 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 99.19 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 99.19 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.19 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 99.19 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 99.19 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 99.19 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 99.19 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 99.19 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 99.19 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 99.19 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 99.19 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 99.19 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 99.18 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 99.18 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 99.18 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 99.18 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 99.18 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 99.18 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 99.18 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 99.17 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 99.17 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 99.17 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 99.17 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 99.17 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 99.17 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 99.17 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 99.16 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 99.16 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 99.16 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 99.16 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 99.16 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 99.16 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 99.15 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 99.15 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 99.15 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 99.14 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 99.14 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.14 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 99.14 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 99.13 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 99.13 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 99.13 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 99.13 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 99.13 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 99.13 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 99.12 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 99.12 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 99.12 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 99.11 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 99.11 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 99.1 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 99.09 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 99.09 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 99.09 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 99.08 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 99.08 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 99.07 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 99.07 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 99.06 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 99.06 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 99.05 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 99.05 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.03 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 99.03 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.02 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 99.02 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 99.01 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 99.0 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 99.0 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 99.0 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 98.98 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 98.96 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 98.96 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 98.96 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 98.96 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.95 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 98.95 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 98.94 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 98.94 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 98.94 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 98.94 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 98.93 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 98.93 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 98.92 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 98.91 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 98.91 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 98.9 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 98.89 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.88 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 98.87 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 98.8 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 98.79 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.75 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.75 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.71 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.68 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.59 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 98.51 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.45 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.37 | |
| 2vuw_A | 336 | Serine/threonine-protein kinase haspin; cell cycle | 98.36 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.28 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 98.11 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.05 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.96 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.9 | |
| 1zar_A | 282 | RIO2 kinase; serine kinase, winged-helix, RIO doma | 97.82 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 97.48 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.45 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.38 | |
| 4gyi_A | 397 | RIO2 kinase; protein kinase, ADP complex, phosphoa | 97.23 | |
| 1zth_A | 258 | RIO1 serine protein kinase; ribosome biogenesis, r | 96.79 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.68 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.08 | |
| 3tm0_A | 263 | Aminoglycoside 3'-phosphotransferase; protein kina | 91.53 | |
| 3dxp_A | 359 | Putative acyl-COA dehydrogenase; protein kinase-li | 88.67 | |
| 1nd4_A | 264 | Aminoglycoside 3'-phosphotransferase; protein kina | 85.7 |
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-42 Score=339.25 Aligned_cols=296 Identities=28% Similarity=0.434 Sum_probs=264.1
Q ss_pred hhHHHHHHHHhhcCCCCCCCCCCCCCCCCCC--CCcceeCCCCCceEeecCccccCCCCCCEEEccCCccee--cCCccc
Q 039925 2 TDHLALLAIKSLLHDRRGVTSSWSNSIDLCQ--WRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRG--EIPEKV 77 (549)
Q Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~--~~p~~~ 77 (549)
+|++||++||+++.+|. .+++|+.+.+||. |.||.|+... ...+++.|+|++|.+++ .+|..|
T Consensus 6 ~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~------------~~~~l~~L~L~~~~l~~~~~~~~~l 72 (313)
T 1ogq_A 6 QDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDT------------QTYRVNNLDLSGLNLPKPYPIPSSL 72 (313)
T ss_dssp HHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSS------------SCCCEEEEEEECCCCSSCEECCGGG
T ss_pred HHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCC------------CCceEEEEECCCCCccCCcccChhH
Confidence 68899999999998876 8899988889998 9999997531 12367899999999998 899999
Q ss_pred cCCCCCCEeeccc-ccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCC
Q 039925 78 GRLFRLEYLLLAN-NHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSL 156 (549)
Q Consensus 78 ~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 156 (549)
.++++|++|+|++ |.+.+.+|..|..+++| ++|++++|.+++.+|..|.++++|++|++++|.+++.+|..+..+++|
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L-~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQL-HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTC-SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCC-CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 9999999999995 99999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CEEecccCcceecccccccccc--cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccc
Q 039925 157 FYDNINRNEFSGLIPSFIFNIS--LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQ 234 (549)
Q Consensus 157 ~~L~L~~n~l~~~~p~~~~~l~--L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~ 234 (549)
++|++++|++++.+|..+..+. |++|++++|.+++.+|..+. .+ .|+.|++++|.
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l----------------------~L~~L~Ls~N~ 208 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NL----------------------NLAFVDLSRNM 208 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GC----------------------CCSEEECCSSE
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-CC----------------------cccEEECcCCc
Confidence 9999999999999999999885 99999999999988888776 21 38899999999
Q ss_pred cccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCccc
Q 039925 235 ISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 235 l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 314 (549)
+++..|..+..+ ++|+.|++++|.+++.+ ..+..+++|++|+|++|++++.+|..+..+++|+.|+|++|+++
T Consensus 209 l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 209 LEGDASVLFGSD--KNTQKIHLAKNSLAFDL-----GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp EEECCGGGCCTT--SCCSEEECCSSEECCBG-----GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ccCcCCHHHhcC--CCCCEEECCCCceeeec-----CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 999999999999 99999999999998655 23788999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCcccCCcccccccceeeecCCCCCCCCc
Q 039925 315 ASLPPLNSQHNHSFSCPGFEFSVIKLEFQIPGNKKLCGGL 354 (549)
Q Consensus 315 ~~~p~~~ls~N~~~~ip~~~~~~l~l~~~~~gn~~~c~~~ 354 (549)
|.+|.. +. +..+.. +.+.+|+.+|+.+
T Consensus 282 ~~ip~~-------~~-----l~~L~~-l~l~~N~~lc~~p 308 (313)
T 1ogq_A 282 GEIPQG-------GN-----LQRFDV-SAYANNKCLCGSP 308 (313)
T ss_dssp EECCCS-------TT-----GGGSCG-GGTCSSSEEESTT
T ss_pred ccCCCC-------cc-----ccccCh-HHhcCCCCccCCC
Confidence 988863 01 223332 6789999999864
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=367.91 Aligned_cols=304 Identities=22% Similarity=0.319 Sum_probs=215.7
Q ss_pred hhHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceeCCCCCceE----------ee---cC------------------
Q 039925 2 TDHLALLAIKSLLHDRRGVTSSWSNSIDLCQWRGVTCTHQHQRIN----------KC---LT------------------ 50 (549)
Q Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~----------g~---lp------------------ 50 (549)
+|++|||+||+++.||. .+++|+.+.|||+|.||.|+. ++|+ |. +|
T Consensus 12 ~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~~--~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~ 88 (768)
T 3rgz_A 12 REIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH 88 (768)
T ss_dssp HHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEET--TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSC
T ss_pred HHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEECC--CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCC
Confidence 58899999999999988 999999888999999999983 4555 54 44
Q ss_pred -----ccccCCCCCCEEEccCCcceecCCc--cccCCCCCCEeecccccccccCCccc-ccccCccceeeeccccccccc
Q 039925 51 -----PHVGNFGYLRFINLVDNNFRGEIPE--KVGRLFRLEYLLLANNHFSGKIPANL-SHCSNLLTKLFICETHLSGQL 122 (549)
Q Consensus 51 -----~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~~L~Ls~n~l~~~~ 122 (549)
+.|+++++|++|+|++|.+++.+|. .|+++++|++|+|++|.+.+.+|..+ .++++| ++|++++|.+++..
T Consensus 89 ~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~ 167 (768)
T 3rgz_A 89 INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL-EVLDLSANSISGAN 167 (768)
T ss_dssp EEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC-SEEECCSSCCEEET
T ss_pred cCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC-CEEECCCCccCCcC
Confidence 4667778888888888888877777 78888888888888888877777655 677777 88888888777766
Q ss_pred ccc---cCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhh
Q 039925 123 LDF---IGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIG 198 (549)
Q Consensus 123 ~~~---~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~ 198 (549)
|.. +.++++|++|++++|.+++..| +..+++|++|++++|.+.+.+|. +..++ |++|++++|.+++.+|..+.
T Consensus 168 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~ 244 (768)
T 3rgz_A 168 VVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244 (768)
T ss_dssp HHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT
T ss_pred ChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHh
Confidence 655 6667777777777777665443 25677777777777777766665 67777 77777777777766676666
Q ss_pred hcCCCCcEeeeccc----------ccccccc----------------cCcccccEEEccccccccccChhhhhccccCcc
Q 039925 199 VTLPKGRNYYILLL----------AQKLYWS----------------DVSTTATIIAMGGNQISGTITLGIKKLIFVNLY 252 (549)
Q Consensus 199 ~~l~~L~~L~l~~~----------~~~l~~l----------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~ 252 (549)
.+++|++|+++.+ +..++.+ ...++|++|++++|.+++.+|..+..+ ++|+
T Consensus 245 -~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~ 321 (768)
T 3rgz_A 245 -TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC--SLLE 321 (768)
T ss_dssp -TCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC--TTCC
T ss_pred -cCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC--CCcc
Confidence 6777777777651 1111111 112567777777777777777777777 7777
Q ss_pred EEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCC-CCCEEEccCCcccccCC
Q 039925 253 ALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQ-NLMELSVSRNKLSASLP 318 (549)
Q Consensus 253 ~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p 318 (549)
.|++++|.+++.+| ...+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|
T Consensus 322 ~L~L~~n~l~~~ip---~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~ 385 (768)
T 3rgz_A 322 SLALSSNNFSGELP---MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385 (768)
T ss_dssp EEECCSSEEEEECC---HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC
T ss_pred EEECCCCcccCcCC---HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC
Confidence 77777777776664 23366677777777777777666666666555 66666666666655444
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=354.21 Aligned_cols=304 Identities=21% Similarity=0.267 Sum_probs=199.0
Q ss_pred hhHHHHHHHHhhcCCCC--------CCCCCCCCCCCCCCC---CcceeCCCCCceE----------eecCccccCCCCCC
Q 039925 2 TDHLALLAIKSLLHDRR--------GVTSSWSNSIDLCQW---RGVTCTHQHQRIN----------KCLTPHVGNFGYLR 60 (549)
Q Consensus 2 ~~~~~l~~~~~~~~~~~--------~~~~~w~~~~~~c~w---~gv~c~~~~~~v~----------g~lp~~~~~l~~L~ 60 (549)
.|++||.+|++++.++. ....+|+.+.++|.| .||.|+.. ++|+ |.+|++|+++++|+
T Consensus 30 ~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~ 108 (636)
T 4eco_A 30 KDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELE 108 (636)
T ss_dssp HHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCC
T ss_pred HHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccce
Confidence 48899999999986432 123489988999999 99999764 4555 89999999999999
Q ss_pred EEEccCC-------------------------------------------------------------------------
Q 039925 61 FINLVDN------------------------------------------------------------------------- 67 (549)
Q Consensus 61 ~L~L~~n------------------------------------------------------------------------- 67 (549)
+|+|++|
T Consensus 109 ~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l 188 (636)
T 4eco_A 109 VLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI 188 (636)
T ss_dssp EEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTT
T ss_pred EEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhh
Confidence 9999988
Q ss_pred -----cceecCCccccCCCCCCEeeccccccccc-----------------CCcccc--cccCccceeeecccccccccc
Q 039925 68 -----NFRGEIPEKVGRLFRLEYLLLANNHFSGK-----------------IPANLS--HCSNLLTKLFICETHLSGQLL 123 (549)
Q Consensus 68 -----~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~~L~Ls~n~l~~~~~ 123 (549)
++++ +|..|+++++|++|+|++|.+++. +|..++ ++++| ++|++++|.+.+.+|
T Consensus 189 ~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L-~~L~L~~n~l~~~~p 266 (636)
T 4eco_A 189 GQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL-TDVEVYNCPNLTKLP 266 (636)
T ss_dssp TCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC-CEEEEECCTTCSSCC
T ss_pred ccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC-CEEEecCCcCCccCh
Confidence 4445 888999999999999999999975 999988 99999 999999999999999
Q ss_pred cccCCCCCCCEEEeecce-eee-eCCcc-------------------------------ccCCCCCCEEecccCcceecc
Q 039925 124 DFIGNPSAIQVMIFKENS-LEG-KFPNT-------------------------------LSNLRSLFYDNINRNEFSGLI 170 (549)
Q Consensus 124 ~~~~~l~~L~~L~L~~n~-l~~-~~p~~-------------------------------~~~l~~L~~L~L~~n~l~~~~ 170 (549)
..|+++++|++|++++|+ +++ .+|.. ++++++|++|++++|.+.+.+
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch
Confidence 999999999999998887 776 45544 444455555555555555444
Q ss_pred cccccccc-cceeeCCCCcCcccCchhhhhcCCC-CcEeeeccc-ccc------------cccc---------------c
Q 039925 171 PSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPK-GRNYYILLL-AQK------------LYWS---------------D 220 (549)
Q Consensus 171 p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~-L~~L~l~~~-~~~------------l~~l---------------~ 220 (549)
| .+..++ |++|++++|.++ .+|..+. .+++ |+.|+++++ +.. +..+ .
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQIT-EIPANFC-GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEE-ECCTTSE-EECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred h-hhCCCCCCCEEECCCCccc-cccHhhh-hhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 4 444444 555555555555 4555544 5555 666666651 111 1111 0
Q ss_pred -------CcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccc----cCCccccCeeeccCccc
Q 039925 221 -------VSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASS----LGNLTLLTYLALDNNKL 289 (549)
Q Consensus 221 -------~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~----l~~l~~L~~L~Ls~N~l 289 (549)
..++|+.|++++|.++...+..+..+ ++|+.|+|++|+++ .+|..+... +.++++|++|+|++|++
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l--~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTG--SPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT--CCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred ccccccccCCCCCEEECcCCccCcCCHHHHccC--CCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcC
Confidence 11255666666666653322333345 66666666666666 443211000 11122555555555555
Q ss_pred cccCCcccc--CCCCCCEEEccCCcccc
Q 039925 290 QGNLPSSLG--YYQNLMELSVSRNKLSA 315 (549)
Q Consensus 290 ~~~~p~~l~--~l~~L~~L~Ls~N~l~~ 315 (549)
+ .+|..+. .+++|+.|+|++|++++
T Consensus 501 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 501 T-KLSDDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp C-BCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred C-ccChhhhhccCCCcCEEECCCCCCCC
Confidence 5 4454444 55555555555555554
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=350.09 Aligned_cols=331 Identities=20% Similarity=0.230 Sum_probs=221.6
Q ss_pred hhHHHHHHHHhhcCCCCCCCCCCCCCC-----CC--CCC------------CcceeCCCCCceE----------eecCcc
Q 039925 2 TDHLALLAIKSLLHDRRGVTSSWSNSI-----DL--CQW------------RGVTCTHQHQRIN----------KCLTPH 52 (549)
Q Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~----------g~lp~~ 52 (549)
+|++||++||+++.+| +|+.+. +| |.| .||.|+. ..+|+ |.+|+.
T Consensus 269 ~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~ 342 (876)
T 4ecn_A 269 KDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDA 342 (876)
T ss_dssp HHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGG
T ss_pred HHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchH
Confidence 5889999999999665 786544 55 999 9999985 24554 899999
Q ss_pred ccCCCCCCEEEc-cCCcceec-----------------------------------------------------------
Q 039925 53 VGNFGYLRFINL-VDNNFRGE----------------------------------------------------------- 72 (549)
Q Consensus 53 ~~~l~~L~~L~L-~~n~l~~~----------------------------------------------------------- 72 (549)
|+++++|++|+| ++|.++|.
T Consensus 343 l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~ 422 (876)
T 4ecn_A 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422 (876)
T ss_dssp GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCC
T ss_pred HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccc
Confidence 999999999999 76654333
Q ss_pred -----------------CCccccCCCCCCEeecccccccc-----------------cCCcccc--cccCccceeeeccc
Q 039925 73 -----------------IPEKVGRLFRLEYLLLANNHFSG-----------------KIPANLS--HCSNLLTKLFICET 116 (549)
Q Consensus 73 -----------------~p~~~~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~~L~~~L~Ls~n 116 (549)
+|..|+++++|++|+|++|.+++ .+|..++ ++++| ++|+|++|
T Consensus 423 l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L-~~L~Ls~N 501 (876)
T 4ecn_A 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL-TDVELYNC 501 (876)
T ss_dssp CCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC-CEEEEESC
T ss_pred cchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCC-CEEECcCC
Confidence 78889999999999999999997 3888877 99999 99999999
Q ss_pred ccccccccccCCCCCCCEEEeecce-eee-eCCccccCCC-------CCCEEecccCcceecccc--cccccc-cceeeC
Q 039925 117 HLSGQLLDFIGNPSAIQVMIFKENS-LEG-KFPNTLSNLR-------SLFYDNINRNEFSGLIPS--FIFNIS-LKWNFL 184 (549)
Q Consensus 117 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~-L~~L~l 184 (549)
.+.+.+|..|+++++|++|+|++|+ +++ .+|..++.++ +|++|+|++|.+. .+|. .+..++ |+.|++
T Consensus 502 ~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC 580 (876)
T ss_dssp TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEEC
T ss_pred CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEEC
Confidence 9988899888888888888888887 776 5565444333 6666666666666 5555 555555 666666
Q ss_pred CCCcCcccCchhhhhcCCCCcEeeecc------------------------c-cccccc-ccCc--ccccEEEccccccc
Q 039925 185 PENSFTGNLPLEIGVTLPKGRNYYILL------------------------L-AQKLYW-SDVS--TTATIIAMGGNQIS 236 (549)
Q Consensus 185 ~~n~l~~~~p~~~~~~l~~L~~L~l~~------------------------~-~~~l~~-l~~~--~~L~~L~l~~n~l~ 236 (549)
++|.++ .+| .+. .+++|+.|++++ + +..+.. +... ++|+.|++++|.+.
T Consensus 581 s~N~l~-~lp-~~~-~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 581 VHNKVR-HLE-AFG-TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp TTSCCC-BCC-CCC-TTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCCCcc-cch-hhc-CCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCC
Confidence 666655 555 333 455555555544 1 111110 0111 23777777777776
Q ss_pred cccCh----------------------------hh-hhccccCccEEEcCCCcccccCCCcCcc----ccCCccccCeee
Q 039925 237 GTITL----------------------------GI-KKLIFVNLYALTMVKNKLSGPIPHHIAS----SLGNLTLLTYLA 283 (549)
Q Consensus 237 ~~~~~----------------------------~~-~~l~~~~L~~L~L~~n~l~~~~p~~l~~----~l~~l~~L~~L~ 283 (549)
+.+|. .+ ..+ ++|+.|+|++|+++ .+|..+.. .+.++++|++|+
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l--~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG--SPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTT--CCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred CccccchhhhccccCCCcCEEEccCCcCCccCHHHHccC--CCCCEEECCCCcCC-ccChHHhccccccccccCCccEEE
Confidence 54331 11 123 55666666666655 34321110 012234788888
Q ss_pred ccCccccccCCcccc--CCCCCCEEEccCCcccccCCCC----------CCCC------CC-CcccCCcc--ccccccee
Q 039925 284 LDNNKLQGNLPSSLG--YYQNLMELSVSRNKLSASLPPL----------NSQH------NH-SFSCPGFE--FSVIKLEF 342 (549)
Q Consensus 284 Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~----------~ls~------N~-~~~ip~~~--~~~l~l~~ 342 (549)
|++|+++ .+|..+. .+++|+.|+|++|++++ +|.. ++++ |+ .+.+|..+ +..|.. +
T Consensus 735 Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~-L 811 (876)
T 4ecn_A 735 LRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ-L 811 (876)
T ss_dssp CCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCE-E
T ss_pred CCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCE-E
Confidence 8888887 6777776 78888888888888876 5543 5544 44 45566555 333332 5
Q ss_pred eecCCCC
Q 039925 343 QIPGNKK 349 (549)
Q Consensus 343 ~~~gn~~ 349 (549)
++.+|..
T Consensus 812 ~Ls~N~L 818 (876)
T 4ecn_A 812 QIGSNDI 818 (876)
T ss_dssp ECCSSCC
T ss_pred ECCCCCC
Confidence 6666654
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=339.95 Aligned_cols=110 Identities=28% Similarity=0.450 Sum_probs=57.7
Q ss_pred CccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC---------
Q 039925 250 NLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL--------- 320 (549)
Q Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--------- 320 (549)
+|+.|+|++|+++|.+ |..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..
T Consensus 633 ~L~~LdLs~N~l~g~i----p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYI----PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp CCCEEECCSSCCBSCC----CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred cccEEECcCCcccccC----CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 3444444444444433 344455555555555555555555555555555555555555555555443
Q ss_pred -CCCCCC-CcccCCcc-cccccceeeecCCCCCCCCccccCcccCCCCCCC
Q 039925 321 -NSQHNH-SFSCPGFE-FSVIKLEFQIPGNKKLCGGLDELHLLSCHSKESK 368 (549)
Q Consensus 321 -~ls~N~-~~~ip~~~-~~~l~l~~~~~gn~~~c~~~~~~~~~~~~~~~~~ 368 (549)
|+++|+ .+.||... +..+.- ..+.|||.+||.+. .+|......
T Consensus 709 L~ls~N~l~g~iP~~~~~~~~~~-~~~~gN~~Lcg~~l----~~C~~~~~~ 754 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEMGQFETFPP-AKFLNNPGLCGYPL----PRCDPSNAD 754 (768)
T ss_dssp EECCSSEEEEECCSSSSGGGSCG-GGGCSCTEEESTTS----CCCCSCC--
T ss_pred EECcCCcccccCCCchhhccCCH-HHhcCCchhcCCCC----cCCCCCccC
Confidence 555555 23445433 333322 56899999999752 378765433
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=298.34 Aligned_cols=125 Identities=18% Similarity=0.130 Sum_probs=109.2
Q ss_pred ccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCC
Q 039925 223 TTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQN 302 (549)
Q Consensus 223 ~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 302 (549)
++|+.|++++|.+.+..|..+..+ ++|+.|++++|.+++.. |..+..+++|++|+|++|++++..|..|..+++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKID----DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTC--TTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cCceEEEecCccccccchhhcccC--CCCCEEECCCCcccccC----hhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 479999999999999889999999 99999999999998655 567889999999999999999878889999999
Q ss_pred CCEEEccCCcccccCCCC----------CCCCCCCcccCCccccc---ccceeeecCCCCCCCCc
Q 039925 303 LMELSVSRNKLSASLPPL----------NSQHNHSFSCPGFEFSV---IKLEFQIPGNKKLCGGL 354 (549)
Q Consensus 303 L~~L~Ls~N~l~~~~p~~----------~ls~N~~~~ip~~~~~~---l~l~~~~~gn~~~c~~~ 354 (549)
|+.|+|++|++++..|.. ++++|++..+|...+.. +.. +.+.+|+..|..+
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~l~~N~l~~~~~ 412 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK-IWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE-EECCSSCBCCCTT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE-EEccCCCcccCCC
Confidence 999999999999877754 89999999999876443 333 7899999988653
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-35 Score=290.11 Aligned_cols=272 Identities=16% Similarity=0.149 Sum_probs=239.4
Q ss_pred hhHHHHHHHHhhcC-CCCCCCCCC----CCCCCCCCCCcceeCCCCCceEeecCccc--cCCCCCCEEEccCCcceecCC
Q 039925 2 TDHLALLAIKSLLH-DRRGVTSSW----SNSIDLCQWRGVTCTHQHQRINKCLTPHV--GNFGYLRFINLVDNNFRGEIP 74 (549)
Q Consensus 2 ~~~~~l~~~~~~~~-~~~~~~~~w----~~~~~~c~w~gv~c~~~~~~v~g~lp~~~--~~l~~L~~L~L~~n~l~~~~p 74 (549)
+|++||++||+++. ++.+.+.+| +...++|.|.|+.|+. ++..+ ...++++.|+|++|.++ .+|
T Consensus 27 ~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~--------~~~~l~~~~~~~l~~L~L~~n~l~-~lp 97 (328)
T 4fcg_A 27 PYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA--------TADLLEDATQPGRVALELRSVPLP-QFP 97 (328)
T ss_dssp CHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHH--------HHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred hHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhh--------hHHHHhcccccceeEEEccCCCch-hcC
Confidence 58899999999984 676667889 4566899999999952 12222 23578999999999999 899
Q ss_pred ccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccC--
Q 039925 75 EKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSN-- 152 (549)
Q Consensus 75 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-- 152 (549)
..+.++++|++|+|++|.++ .+|..+..+++| ++|+|++|.++ .+|..++++++|++|++++|++.+.+|..+..
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L-~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGL-ETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTC-SEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred hhhhhCCCCCEEECCCCCcc-chhHHHhccCCC-CEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 99999999999999999999 899999999999 99999999999 77889999999999999999988889987765
Q ss_pred -------CCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCccc
Q 039925 153 -------LRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTT 224 (549)
Q Consensus 153 -------l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~ 224 (549)
+++|++|++++|.++ .+|..+..++ |++|++++|.++ .+|..+. .+ ++
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~-~l---------------------~~ 230 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HL---------------------PK 230 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGG-GC---------------------TT
T ss_pred chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhc-cC---------------------CC
Confidence 999999999999998 7888899999 999999999999 5666655 33 36
Q ss_pred ccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCC
Q 039925 225 ATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLM 304 (549)
Q Consensus 225 L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 304 (549)
|+.|++++|.+.+.+|..+..+ ++|+.|+|++|.+.+.+ |..+..+++|++|+|++|++.+.+|..+..+++|+
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l--~~L~~L~L~~n~~~~~~----p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGR--APLKRLILKDCSNLLTL----PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCC--CCCCEEECTTCTTCCBC----CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred CCEEECcCCcchhhhHHHhcCC--CCCCEEECCCCCchhhc----chhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 8889999999999999999999 99999999999998877 56789999999999999999999999999999999
Q ss_pred EEEccCCcccc
Q 039925 305 ELSVSRNKLSA 315 (549)
Q Consensus 305 ~L~Ls~N~l~~ 315 (549)
.+++..|.+..
T Consensus 305 ~l~l~~~~~~~ 315 (328)
T 4fcg_A 305 IILVPPHLQAQ 315 (328)
T ss_dssp EEECCGGGSCC
T ss_pred EEeCCHHHHHH
Confidence 99999887663
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=287.70 Aligned_cols=309 Identities=18% Similarity=0.161 Sum_probs=248.4
Q ss_pred CCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCcccee
Q 039925 32 QWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKL 111 (549)
Q Consensus 32 ~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L 111 (549)
.|..|.|... +++ .+|..+. +++++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++| ++|
T Consensus 12 ~~~~v~c~~~--~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L-~~L 85 (477)
T 2id5_A 12 QDRAVLCHRK--RFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL-RTL 85 (477)
T ss_dssp TTTEEECCSC--CCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC-CEE
T ss_pred CCCEEEeCCC--CcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccC-CEE
Confidence 4678888653 333 5676553 589999999999997778899999999999999999997778899999999 999
Q ss_pred eecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCc
Q 039925 112 FICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFT 190 (549)
Q Consensus 112 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~ 190 (549)
+|++|.++...+..|.++++|++|+|++|.+.+..|..|..+++|++|++++|.+.+..+..|..++ |++|++++|.++
T Consensus 86 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp ECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred ECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 9999999977777889999999999999999988888999999999999999999988888899998 999999999998
Q ss_pred ccCchhhhhcCCCCcEeeecc-cccccc--cccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCC
Q 039925 191 GNLPLEIGVTLPKGRNYYILL-LAQKLY--WSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPH 267 (549)
Q Consensus 191 ~~~p~~~~~~l~~L~~L~l~~-~~~~l~--~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~ 267 (549)
.++......+++|+.|++++ .+..+. .+...++|+.|++++|.+.+.++...... .+|+.|++++|.++ .+|
T Consensus 166 -~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~-~~~- 240 (477)
T 2id5_A 166 -SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG--LNLTSLSITHCNLT-AVP- 240 (477)
T ss_dssp -SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT--CCCSEEEEESSCCC-SCC-
T ss_pred -ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC--ccccEEECcCCccc-ccC-
Confidence 45544444899999999987 222221 23344588888888888777777766666 68888888888887 343
Q ss_pred cCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC----------CCCCCCCcccCCccccc
Q 039925 268 HIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL----------NSQHNHSFSCPGFEFSV 337 (549)
Q Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----------~ls~N~~~~ip~~~~~~ 337 (549)
+..+..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++..|.. ++++|++..+|+..+..
T Consensus 241 --~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 318 (477)
T 2id5_A 241 --YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318 (477)
T ss_dssp --HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred --HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence 356788888888888888888777777888888888888888888765544 78888888888876444
Q ss_pred c-cce-eeecCCCCCCCC
Q 039925 338 I-KLE-FQIPGNKKLCGG 353 (549)
Q Consensus 338 l-~l~-~~~~gn~~~c~~ 353 (549)
+ +++ +.+.+||+.|..
T Consensus 319 l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 319 VGNLETLILDSNPLACDC 336 (477)
T ss_dssp GGGCCEEECCSSCEECSG
T ss_pred CcccCEEEccCCCccCcc
Confidence 3 222 788999998863
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=286.00 Aligned_cols=147 Identities=16% Similarity=0.131 Sum_probs=88.8
Q ss_pred CCCCCcceeCCCCCceE---------------------eecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeec
Q 039925 30 LCQWRGVTCTHQHQRIN---------------------KCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLL 88 (549)
Q Consensus 30 ~c~w~gv~c~~~~~~v~---------------------g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 88 (549)
.|.|.|+ |+....+++ +..|..|.++++|++|+|++|.+++..|..|.++++|++|+|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4899988 875433333 233455666666666666666666555566666666666666
Q ss_pred ccccccccCCcccccccCccceeeecccccccc-cccccCCCCCCCEEEeecceeeeeC-CccccCCCCCCEEecccCcc
Q 039925 89 ANNHFSGKIPANLSHCSNLLTKLFICETHLSGQ-LLDFIGNPSAIQVMIFKENSLEGKF-PNTLSNLRSLFYDNINRNEF 166 (549)
Q Consensus 89 s~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l 166 (549)
++|++++..|..|..+++| ++|++++|.+++. .|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+
T Consensus 82 s~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSL-KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTC-CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCccCccCHHHhccCCCC-cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 6666665444446666666 6666666666542 4455666666666666666632233 34566666666666666666
Q ss_pred eecccccccccc
Q 039925 167 SGLIPSFIFNIS 178 (549)
Q Consensus 167 ~~~~p~~~~~l~ 178 (549)
.+..|..+..++
T Consensus 161 ~~~~~~~l~~l~ 172 (549)
T 2z81_A 161 RNYQSQSLKSIR 172 (549)
T ss_dssp CEECTTTTTTCS
T ss_pred cccChhhhhccc
Confidence 655555554433
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-31 Score=287.14 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=104.3
Q ss_pred eecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeeccccccccccccc
Q 039925 47 KCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFI 126 (549)
Q Consensus 47 g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~ 126 (549)
+..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++| ++|++++|.+++..+..|
T Consensus 46 ~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-~~L~L~~n~l~~~~~~~~ 124 (606)
T 3vq2_A 46 ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL-ENLVAVETKLASLESFPI 124 (606)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC-CEEECTTSCCCCSSSSCC
T ss_pred EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC-CEEEccCCcccccccccc
Confidence 3344578888999999999998887778888889999999999999887778888888888 899999998887777788
Q ss_pred CCCCCCCEEEeecceeee-eCCccccCCCCCCEEecccCcceecccccc
Q 039925 127 GNPSAIQVMIFKENSLEG-KFPNTLSNLRSLFYDNINRNEFSGLIPSFI 174 (549)
Q Consensus 127 ~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 174 (549)
+++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+..+
T Consensus 125 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 173 (606)
T 3vq2_A 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173 (606)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh
Confidence 888888888888888875 568888888888888888887776554433
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-31 Score=274.19 Aligned_cols=317 Identities=14% Similarity=0.112 Sum_probs=199.8
Q ss_pred CCCCCCCCCCCCC-CCcceeCCCCCceE-----eecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccc
Q 039925 20 VTSSWSNSIDLCQ-WRGVTCTHQHQRIN-----KCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHF 93 (549)
Q Consensus 20 ~~~~w~~~~~~c~-w~gv~c~~~~~~v~-----g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 93 (549)
.+++|.+..+||. |.+..|.....++. ......-..++++++|++++|.++...+..|..+++|++|+|++|.+
T Consensus 2 ~~~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i 81 (390)
T 3o6n_A 2 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81 (390)
T ss_dssp -----CCEECBCC------EEEESCEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC
T ss_pred CcCCCCCccceehhhhhhccceeeeeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc
Confidence 3568887778875 44444432222222 01111123457788888888887743334467788888888888888
Q ss_pred cccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceeccccc
Q 039925 94 SGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSF 173 (549)
Q Consensus 94 ~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 173 (549)
++..+..|..+++| ++|++++|.+++..|..|+++++|++|++++|.++...+..|.++++|++|++++|.+.+..+..
T Consensus 82 ~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 160 (390)
T 3o6n_A 82 EEIDTYAFAYAHTI-QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160 (390)
T ss_dssp CEECTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred cccChhhccCCCCc-CEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhh
Confidence 76556677788888 88888888887777777888888888888888887433344577888888888888887766777
Q ss_pred ccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeeccc-ccc------cc------------cccCcccccEEEcccc
Q 039925 174 IFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLL-AQK------LY------------WSDVSTTATIIAMGGN 233 (549)
Q Consensus 174 ~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~-~~~------l~------------~l~~~~~L~~L~l~~n 233 (549)
+..++ |++|++++|.+++ ++ +. .+++|+.|+++.+ +.. +. .....++|+.|++++|
T Consensus 161 ~~~l~~L~~L~l~~n~l~~-~~--~~-~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n 236 (390)
T 3o6n_A 161 FQATTSLQNLQLSSNRLTH-VD--LS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 236 (390)
T ss_dssp TSSCTTCCEEECCSSCCSB-CC--GG-GCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSS
T ss_pred ccCCCCCCEEECCCCcCCc-cc--cc-cccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCC
Confidence 77777 8888888888773 33 22 5666666666551 111 00 0112235666666666
Q ss_pred ccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcc
Q 039925 234 QISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKL 313 (549)
Q Consensus 234 ~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 313 (549)
.+++. ..+..+ ++|+.|++++|.+++.. |..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++
T Consensus 237 ~l~~~--~~l~~l--~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 237 NLTDT--AWLLNY--PGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp CCCCC--GGGGGC--TTCSEEECCSSCCCEEE----SGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCC
T ss_pred CCccc--HHHcCC--CCccEEECCCCcCCCcC----hhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcc
Confidence 66643 456666 77777777777776544 456677777777777777776 3455556677777777777777
Q ss_pred cccCCCC----------CCCCCCCcccCCcccccccceeeecCCCCCCC
Q 039925 314 SASLPPL----------NSQHNHSFSCPGFEFSVIKLEFQIPGNKKLCG 352 (549)
Q Consensus 314 ~~~~p~~----------~ls~N~~~~ip~~~~~~l~l~~~~~gn~~~c~ 352 (549)
++ +|.. ++++|++..+|...+..+.. +.+.+|++-|.
T Consensus 308 ~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~-L~l~~N~~~~~ 354 (390)
T 3o6n_A 308 LH-VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN-LTLSHNDWDCN 354 (390)
T ss_dssp CC-CGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSE-EECCSSCEEHH
T ss_pred ee-cCccccccCcCCEEECCCCccceeCchhhccCCE-EEcCCCCccch
Confidence 64 3322 67777777666554555543 67777777764
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.6e-32 Score=268.61 Aligned_cols=242 Identities=26% Similarity=0.418 Sum_probs=220.0
Q ss_pred CceEe--ecCccccCCCCCCEEEccC-CcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccc
Q 039925 43 QRINK--CLTPHVGNFGYLRFINLVD-NNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLS 119 (549)
Q Consensus 43 ~~v~g--~lp~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~ 119 (549)
.++.| .+|+.|.++++|++|+|++ |.+.+.+|..|.++++|++|+|++|.+++.+|..+..+++| ++|++++|.++
T Consensus 60 ~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-~~L~Ls~N~l~ 138 (313)
T 1ogq_A 60 LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL-VTLDFSYNALS 138 (313)
T ss_dssp CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC-CEEECCSSEEE
T ss_pred CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC-CEEeCCCCccC
Confidence 44556 8999999999999999995 99999999999999999999999999999999999999999 99999999999
Q ss_pred cccccccCCCCCCCEEEeecceeeeeCCccccCCC-CCCEEecccCcceecccccccccccceeeCCCCcCcccCchhhh
Q 039925 120 GQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLR-SLFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIG 198 (549)
Q Consensus 120 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~L~~L~l~~n~l~~~~p~~~~ 198 (549)
+.+|..|..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+..++|++|++++|.+++..|..+.
T Consensus 139 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~ 218 (313)
T 1ogq_A 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218 (313)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCC
T ss_pred CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHh
Confidence 99999999999999999999999999999999998 99999999999999999999998899999999999977776654
Q ss_pred hcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccc
Q 039925 199 VTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTL 278 (549)
Q Consensus 199 ~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~ 278 (549)
.+ ++|+.|++++|.+++.+|. +..+ ++|++|+|++|.+++.+ |..+..+++
T Consensus 219 -~l---------------------~~L~~L~L~~N~l~~~~~~-~~~l--~~L~~L~Ls~N~l~~~~----p~~l~~l~~ 269 (313)
T 1ogq_A 219 -SD---------------------KNTQKIHLAKNSLAFDLGK-VGLS--KNLNGLDLRNNRIYGTL----PQGLTQLKF 269 (313)
T ss_dssp -TT---------------------SCCSEEECCSSEECCBGGG-CCCC--TTCCEEECCSSCCEECC----CGGGGGCTT
T ss_pred -cC---------------------CCCCEEECCCCceeeecCc-cccc--CCCCEEECcCCcccCcC----ChHHhcCcC
Confidence 33 3688889999999876665 7777 89999999999999876 578899999
Q ss_pred cCeeeccCccccccCCccccCCCCCCEEEccCCc-ccc
Q 039925 279 LTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNK-LSA 315 (549)
Q Consensus 279 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ 315 (549)
|++|+|++|++++.+|.. ..+++|+.+++++|+ +.|
T Consensus 270 L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 999999999999888886 889999999999998 554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=287.80 Aligned_cols=314 Identities=14% Similarity=0.111 Sum_probs=185.9
Q ss_pred CCCCCCCCCCCCCC----CCcceeCCCCCceE---eecC--ccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecc
Q 039925 19 GVTSSWSNSIDLCQ----WRGVTCTHQHQRIN---KCLT--PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLA 89 (549)
Q Consensus 19 ~~~~~w~~~~~~c~----w~gv~c~~~~~~v~---g~lp--~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 89 (549)
..+++|.++.+||. |.++.|+. .+. ...+ ..-..+++++.|++++|.+....+..|..+++|++|+|+
T Consensus 7 ~~l~~~~~~~~C~~~~~~~~c~~~~~---~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~ 83 (597)
T 3oja_B 7 YNVKPRQPEYKCIDSNLQYDCVFYDV---HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83 (597)
T ss_dssp ----CCCSEECCCCC--CCSEEECSC---EECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECT
T ss_pred ccccCCCCCCcCcccCcCceeEecCc---eecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECC
Confidence 36678988778774 65554431 111 0000 011234566666666666664333445666666666666
Q ss_pred cccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceec
Q 039925 90 NNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL 169 (549)
Q Consensus 90 ~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 169 (549)
+|.+++..|..|..+++| ++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|+|++|.+.+.
T Consensus 84 ~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 84 DLQIEEIDTYAFAYAHTI-QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp TSCCCEECTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCCCChHHhcCCCCC-CEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 666665555566666666 6666666666666666666666666666666666643333456666666666666666665
Q ss_pred ccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeeccc--------------------ccccccccCcccccEE
Q 039925 170 IPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLL--------------------AQKLYWSDVSTTATII 228 (549)
Q Consensus 170 ~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~--------------------~~~l~~l~~~~~L~~L 228 (549)
.|..|..++ |++|++++|.+++ ++ +. .+++|+.|+++.+ +..+. ....++|+.|
T Consensus 163 ~~~~~~~l~~L~~L~L~~N~l~~-~~--~~-~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~-~~~~~~L~~L 237 (597)
T 3oja_B 163 EDDTFQATTSLQNLQLSSNRLTH-VD--LS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR-GPVNVELTIL 237 (597)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSB-CC--GG-GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE-CSCCSCCCEE
T ss_pred ChhhhhcCCcCcEEECcCCCCCC-cC--hh-hhhhhhhhhcccCccccccCCchhheeeccCCcccccc-cccCCCCCEE
Confidence 566666666 6666666666653 22 11 4455555555441 11111 1122456777
Q ss_pred EccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEc
Q 039925 229 AMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSV 308 (549)
Q Consensus 229 ~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 308 (549)
++++|.+++ +..+..+ ++|+.|+|++|.+++.. |..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|
T Consensus 238 ~L~~n~l~~--~~~l~~l--~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 238 KLQHNNLTD--TAWLLNY--PGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 308 (597)
T ss_dssp ECCSSCCCC--CGGGGGC--TTCSEEECCSSCCCEEE----SGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEEC
T ss_pred ECCCCCCCC--ChhhccC--CCCCEEECCCCccCCCC----HHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEEC
Confidence 777777665 3556666 77777777777777554 4566777777777777777774 5555666777777777
Q ss_pred cCCcccccCCCC----------CCCCCCCcccCCcccccccceeeecCCCCCCC
Q 039925 309 SRNKLSASLPPL----------NSQHNHSFSCPGFEFSVIKLEFQIPGNKKLCG 352 (549)
Q Consensus 309 s~N~l~~~~p~~----------~ls~N~~~~ip~~~~~~l~l~~~~~gn~~~c~ 352 (549)
++|.+++ +|.. ++++|.+..+|...+..+.. +.+.+||+.|.
T Consensus 309 s~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~-L~l~~N~~~~~ 360 (597)
T 3oja_B 309 SHNHLLH-VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN-LTLSHNDWDCN 360 (597)
T ss_dssp CSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSE-EECCSSCEEHH
T ss_pred CCCCCCc-cCcccccCCCCCEEECCCCCCCCcChhhcCCCCE-EEeeCCCCCCh
Confidence 7777763 3332 77777777776555555543 67777777764
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-31 Score=287.42 Aligned_cols=171 Identities=16% Similarity=0.130 Sum_probs=114.8
Q ss_pred CCCCCCCCCC----CCCCC----CcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeeccc
Q 039925 19 GVTSSWSNSI----DLCQW----RGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLAN 90 (549)
Q Consensus 19 ~~~~~w~~~~----~~c~w----~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 90 (549)
..+++|+.+. ++|.+ ..|.|... +.+ .||+.+. +++++|||++|+|++..+.+|.++++|++|+|++
T Consensus 11 ~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~--~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~ 85 (635)
T 4g8a_A 11 DKLAAANSSIPESWEPCVEVVPNITYQCMEL--NFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 85 (635)
T ss_dssp --------------CCSEEEETTTEEECTTS--CCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred chhhcccCCCCCCCCCccccCCCCEEECCCC--CcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCC
Confidence 3555554333 34543 23567542 333 4565443 3678888888888865566788888888888888
Q ss_pred ccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCccee-c
Q 039925 91 NHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSG-L 169 (549)
Q Consensus 91 n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~ 169 (549)
|+|++..|.+|.++++| ++|+|++|+|++..+..|.++++|++|+|++|++++..+..|+++++|++|++++|.+.+ .
T Consensus 86 N~i~~i~~~~f~~L~~L-~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~ 164 (635)
T 4g8a_A 86 CEIQTIEDGAYQSLSHL-STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 164 (635)
T ss_dssp CCCCEECTTTTTTCTTC-CEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC
T ss_pred CcCCCcChhHhcCCCCC-CEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCC
Confidence 88875556667788888 888888888877767778888888888888888876555667888888888888888764 3
Q ss_pred ccccccccc-cceeeCCCCcCcccCch
Q 039925 170 IPSFIFNIS-LKWNFLPENSFTGNLPL 195 (549)
Q Consensus 170 ~p~~~~~l~-L~~L~l~~n~l~~~~p~ 195 (549)
.|..+..++ |++|++++|++++..+.
T Consensus 165 ~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 165 LPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CchhhccchhhhhhcccCccccccccc
Confidence 566777777 88888888777644443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-31 Score=274.47 Aligned_cols=278 Identities=18% Similarity=0.175 Sum_probs=203.8
Q ss_pred eecCccccCCCCCCEEEccCCcceecC-CccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccc
Q 039925 47 KCLTPHVGNFGYLRFINLVDNNFRGEI-PEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDF 125 (549)
Q Consensus 47 g~lp~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~ 125 (549)
+..|..|.++++|++|+|++|.+.+.+ +..|.++++|++|+|++|.+++..|..|.++++| ++|++++|.+++..+..
T Consensus 44 ~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~ 122 (455)
T 3v47_A 44 ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL-EVLTLTQCNLDGAVLSG 122 (455)
T ss_dssp EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC-CEEECTTSCCBTHHHHS
T ss_pred cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccC-CEEeCCCCCCCccccCc
Confidence 334667777777777777777776444 4567777778888888777776667777777777 78888887777654443
Q ss_pred --cCCCCCCCEEEeecceeeeeCCcc-ccCCCCCCEEecccCcceeccccccccc-------------------------
Q 039925 126 --IGNPSAIQVMIFKENSLEGKFPNT-LSNLRSLFYDNINRNEFSGLIPSFIFNI------------------------- 177 (549)
Q Consensus 126 --~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l------------------------- 177 (549)
|..+++|++|+|++|.+++..|.. +.++++|++|++++|.+.+..+..+..+
T Consensus 123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~ 202 (455)
T 3v47_A 123 NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202 (455)
T ss_dssp STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH
T ss_pred ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc
Confidence 777778888888888777665655 6777888888888887776666555433
Q ss_pred ---------c-cceeeCCCCcCcccCchhhhhc--------------------------------------CCCCcEeee
Q 039925 178 ---------S-LKWNFLPENSFTGNLPLEIGVT--------------------------------------LPKGRNYYI 209 (549)
Q Consensus 178 ---------~-L~~L~l~~n~l~~~~p~~~~~~--------------------------------------l~~L~~L~l 209 (549)
+ |++|++++|.+++..|..+... .++|+.|++
T Consensus 203 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 282 (455)
T 3v47_A 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282 (455)
T ss_dssp HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEEC
T ss_pred cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEe
Confidence 4 6667777776665555554321 123444444
Q ss_pred cc-ccccc--ccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccC
Q 039925 210 LL-LAQKL--YWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDN 286 (549)
Q Consensus 210 ~~-~~~~l--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~ 286 (549)
++ .+... ..+...++|+.|++++|.+.+..|..|..+ ++|+.|+|++|.+++.. |..+..+++|++|+|++
T Consensus 283 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL--THLLKLNLSQNFLGSID----SRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC--TTCCEEECCSSCCCEEC----GGGGTTCTTCCEEECCS
T ss_pred cCccccccchhhcccCCCCCEEECCCCcccccChhHhcCc--ccCCEEECCCCccCCcC----hhHhcCcccCCEEECCC
Confidence 43 11111 123345689999999999999889899999 99999999999998544 67889999999999999
Q ss_pred ccccccCCccccCCCCCCEEEccCCcccccCCCC----------CCCCCCCc-ccC
Q 039925 287 NKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL----------NSQHNHSF-SCP 331 (549)
Q Consensus 287 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----------~ls~N~~~-~ip 331 (549)
|++++..|..|..+++|+.|++++|++++..+.. ++++|++. .+|
T Consensus 357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999888999999999999999999999744422 88888854 444
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-31 Score=275.48 Aligned_cols=304 Identities=18% Similarity=0.116 Sum_probs=248.6
Q ss_pred CceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeeccccccccc
Q 039925 43 QRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQL 122 (549)
Q Consensus 43 ~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~ 122 (549)
.++.+..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++...+..|.++++| ++|+|++|.+++..
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~i~~~~ 120 (477)
T 2id5_A 42 NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL-TKLDISENKIVILL 120 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC-CEEECTTSCCCEEC
T ss_pred CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC-CEEECCCCccccCC
Confidence 34555557799999999999999999998889999999999999999999995445568899999 99999999999999
Q ss_pred ccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcC
Q 039925 123 LDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTL 201 (549)
Q Consensus 123 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l 201 (549)
+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..++ |+.|++++|.+.+..+..+. .+
T Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~l 199 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK-RL 199 (477)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC-SC
T ss_pred hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc-cC
Confidence 99999999999999999999988899999999999999999999977777899999 99999999999965555555 89
Q ss_pred CCCcEeeeccc--ccccc-cccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccc
Q 039925 202 PKGRNYYILLL--AQKLY-WSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTL 278 (549)
Q Consensus 202 ~~L~~L~l~~~--~~~l~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~ 278 (549)
++|+.|+++++ ...+. ......+|+.|++++|.++...+..+..+ ++|+.|+|++|.+++.. +..+..+++
T Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~----~~~~~~l~~ 273 (477)
T 2id5_A 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL--VYLRFLNLSYNPISTIE----GSMLHELLR 273 (477)
T ss_dssp TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC--TTCCEEECCSSCCCEEC----TTSCTTCTT
T ss_pred cccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc--cccCeeECCCCcCCccC----hhhcccccc
Confidence 99999999872 11111 11112389999999999996655778888 99999999999998544 467889999
Q ss_pred cCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC----------CCCCCCCcccCC-cc-cccccceeeecC
Q 039925 279 LTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL----------NSQHNHSFSCPG-FE-FSVIKLEFQIPG 346 (549)
Q Consensus 279 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----------~ls~N~~~~ip~-~~-~~~l~l~~~~~g 346 (549)
|++|+|++|++++..|..|..+++|+.|+|++|++++..+.. ++++|++..-.. .. +... ....+.+
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~-~~~~~~~ 352 (477)
T 2id5_A 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRR-WRLNFNR 352 (477)
T ss_dssp CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTT-TSSCCTT
T ss_pred CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhh-hccccCc
Confidence 999999999999888999999999999999999998644322 788888442211 11 1111 1144667
Q ss_pred CCCCCCCcc
Q 039925 347 NKKLCGGLD 355 (549)
Q Consensus 347 n~~~c~~~~ 355 (549)
+...|..+.
T Consensus 353 ~~~~C~~p~ 361 (477)
T 2id5_A 353 QQPTCATPE 361 (477)
T ss_dssp CCCBEEESG
T ss_pred cCceeCCch
Confidence 777786543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-31 Score=287.33 Aligned_cols=308 Identities=16% Similarity=0.202 Sum_probs=244.8
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCC----CCCCCc-ceeCCCC---CceEeecCccccCCCCCCEEEccCCcceecCCcccc
Q 039925 7 LLAIKSLLHDRRGVTSSWSNSID----LCQWRG-VTCTHQH---QRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVG 78 (549)
Q Consensus 7 l~~~~~~~~~~~~~~~~w~~~~~----~c~w~g-v~c~~~~---~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 78 (549)
-.++++-...- ...+|....+ .|.|.. ..|. .| .+|+-. .-.+++.|+|++|.+.|.+|.+|+
T Consensus 32 ~~aL~~~~~~~--~~~~w~~~~~~~~~~~~W~~~~~~c-~w~~~~GV~C~------~~~~V~~L~L~~~~l~g~lp~~l~ 102 (636)
T 4eco_A 32 YLALKEIWDAL--NGKNWSQQGFGTQPGANWNFNKELD-MWGAQPGVSLN------SNGRVTGLSLEGFGASGRVPDAIG 102 (636)
T ss_dssp HHHHHHHHHHT--TGGGCCCCC------CCCCCSSCGG-GTTCCTTEEEC------TTCCEEEEECTTSCCEEEECGGGG
T ss_pred HHHHHHHHHHc--CCCCcccCCcCCccCCCCCCCCCcc-cccCCCCeEEc------CCCCEEEEEecCcccCCcCChHHh
Confidence 34555444222 3347864442 347963 3332 35 667621 115799999999999999999999
Q ss_pred CCCCCCEeeccccc------------------------------------------------------------------
Q 039925 79 RLFRLEYLLLANNH------------------------------------------------------------------ 92 (549)
Q Consensus 79 ~l~~L~~L~Ls~n~------------------------------------------------------------------ 92 (549)
+|++|++|+|++|.
T Consensus 103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 182 (636)
T 4eco_A 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182 (636)
T ss_dssp GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCC
T ss_pred cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccc
Confidence 99999999999984
Q ss_pred ------------ccccCCcccccccCccceeeecccccccc-----------------cccccC--CCCCCCEEEeecce
Q 039925 93 ------------FSGKIPANLSHCSNLLTKLFICETHLSGQ-----------------LLDFIG--NPSAIQVMIFKENS 141 (549)
Q Consensus 93 ------------l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~ 141 (549)
+++ +|..++++++| ++|+|++|.+++. +|..++ ++++|++|+|++|.
T Consensus 183 l~~l~l~~~~n~l~~-ip~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 183 LKDTQIGQLSNNITF-VSKAVMRLTKL-RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCTTTTTCCSCEEEE-ECGGGGGCTTC-CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred hhhhhhccccCCCcc-CCHHHhcccCC-CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 444 88889999999 9999999999985 899998 99999999999999
Q ss_pred eeeeCCccccCCCCCCEEecccCc-cee-ccccccccc------c-cceeeCCCCcCcccCch--hhhhcCCCCcEeeec
Q 039925 142 LEGKFPNTLSNLRSLFYDNINRNE-FSG-LIPSFIFNI------S-LKWNFLPENSFTGNLPL--EIGVTLPKGRNYYIL 210 (549)
Q Consensus 142 l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~-L~~L~l~~n~l~~~~p~--~~~~~l~~L~~L~l~ 210 (549)
+.+.+|..|+++++|++|++++|+ +++ .+|..+..+ + |++|++++|.++ .+|. .+. .+++|+.|+++
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~ 338 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECL 338 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECC
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCc
Confidence 999999999999999999999998 888 899888876 7 999999999999 8998 777 89999999998
Q ss_pred c-ccc-ccccccCcccccEEEccccccccccChhhhhccccC-ccEEEcCCCcccccCCCcCccccCCcc--ccCeeecc
Q 039925 211 L-LAQ-KLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVN-LYALTMVKNKLSGPIPHHIASSLGNLT--LLTYLALD 285 (549)
Q Consensus 211 ~-~~~-~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~-L~~L~L~~n~l~~~~p~~l~~~l~~l~--~L~~L~Ls 285 (549)
+ .+. .+..+...++|+.|++++|.++ .+|..+..+ ++ |+.|++++|.++ .+ |..+..++ +|++|+++
T Consensus 339 ~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l--~~~L~~L~Ls~N~l~-~l----p~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 339 YNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGF--TEQVENLSFAHNKLK-YI----PNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp SCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEE--CTTCCEEECCSSCCS-SC----CSCCCTTCSSCEEEEECC
T ss_pred CCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhh--cccCcEEEccCCcCc-cc----chhhhhcccCccCEEECc
Confidence 7 333 3334444568899999999988 778888888 88 999999999888 55 44555543 78888888
Q ss_pred CccccccCCcccc-------CCCCCCEEEccCCcccccCCCC-----------CCCCCCCcccCCcccc
Q 039925 286 NNKLQGNLPSSLG-------YYQNLMELSVSRNKLSASLPPL-----------NSQHNHSFSCPGFEFS 336 (549)
Q Consensus 286 ~N~l~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~p~~-----------~ls~N~~~~ip~~~~~ 336 (549)
+|++++.+|..+. .+++|+.|++++|+++. +|.. ++++|++..+|...+.
T Consensus 411 ~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 478 (636)
T 4eco_A 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478 (636)
T ss_dssp SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCSBCCSSSSE
T ss_pred CCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCCCcCHHHhc
Confidence 8888887887777 77788888888888883 4442 7888888888887754
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=281.02 Aligned_cols=288 Identities=17% Similarity=0.102 Sum_probs=222.2
Q ss_pred CCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEe
Q 039925 58 YLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIF 137 (549)
Q Consensus 58 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 137 (549)
+|+.|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++| ++|++++|.+++..|..+..+++|++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTL-KKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTC-CEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccC-CEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 6788888888888666667888888888888888888 778888888888 88888888888777778888888888888
Q ss_pred ecceeeeeCCcc-ccCCCCCCEEecccCcceecc--cccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeeccc-
Q 039925 138 KENSLEGKFPNT-LSNLRSLFYDNINRNEFSGLI--PSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLL- 212 (549)
Q Consensus 138 ~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~- 212 (549)
++|.+.+.+|.. +..+++|++|++++|.+.+.. +..+..++ |++|++++|.+.+..|..+. .+++|+.|+++++
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTR 411 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCC
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCc
Confidence 888877655543 778888888888888887655 66777777 88888888888766666665 7888888888762
Q ss_pred cccc---ccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCccccc-CCCcCccccCCccccCeeeccCcc
Q 039925 213 AQKL---YWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGP-IPHHIASSLGNLTLLTYLALDNNK 288 (549)
Q Consensus 213 ~~~l---~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~-~p~~l~~~l~~l~~L~~L~Ls~N~ 288 (549)
+... ..+...++|+.|++++|.+.+..|..+..+ ++|+.|++++|.+++. ++. +..+..+++|++|++++|+
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~--~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL--PALQHLNLQGNHFPKGNIQK--TNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC--TTCCEEECTTCBCGGGEECS--SCGGGGCTTCCEEECTTSC
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC--CCCCEEECCCCCCCcccccc--chhhccCCCccEEECCCCc
Confidence 2221 123445688888898888888888888888 8899999998888753 221 3567888889999999998
Q ss_pred ccccCCccccCCCCCCEEEccCCcccccCCCC---------CCCCCCCcccCCcc---cccccceeeecCCCCCCCC
Q 039925 289 LQGNLPSSLGYYQNLMELSVSRNKLSASLPPL---------NSQHNHSFSCPGFE---FSVIKLEFQIPGNKKLCGG 353 (549)
Q Consensus 289 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---------~ls~N~~~~ip~~~---~~~l~l~~~~~gn~~~c~~ 353 (549)
+++..|..|..+++|+.|+|++|++++..|.. ++++|++..+|+.. +..+.. +.+.|||+.|..
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~-L~l~~N~~~c~c 563 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRT-INLRQNPLDCTC 563 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSE-EECTTCCEECSG
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCCE-EeCCCCCccccC
Confidence 88777888888889999999999888766543 67888888887765 333333 789999999854
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=287.48 Aligned_cols=294 Identities=17% Similarity=0.158 Sum_probs=210.6
Q ss_pred CceEeecCccccCCCCCCEEEccCCccee-----------------cCCcccc--CCCCCCEeecccccccccCCccccc
Q 039925 43 QRINKCLTPHVGNFGYLRFINLVDNNFRG-----------------EIPEKVG--RLFRLEYLLLANNHFSGKIPANLSH 103 (549)
Q Consensus 43 ~~v~g~lp~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~ 103 (549)
.+++| ||+.|+++++|++|+|++|.+++ .+|+.++ ++++|++|+|++|.+.+.+|..|.+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 45666 88888888888888888888886 3777776 8888888888888887788888888
Q ss_pred ccCccceeeecccc-ccc-ccccccCCC-------CCCCEEEeecceeeeeCCc--cccCCCCCCEEecccCcceecccc
Q 039925 104 CSNLLTKLFICETH-LSG-QLLDFIGNP-------SAIQVMIFKENSLEGKFPN--TLSNLRSLFYDNINRNEFSGLIPS 172 (549)
Q Consensus 104 l~~L~~~L~Ls~n~-l~~-~~~~~~~~l-------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~ 172 (549)
+++| ++|+|++|+ +++ .+|..++++ ++|++|+|++|.++ .+|. .|.++++|++|+|++|.+. .+|
T Consensus 514 L~~L-~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 514 LPEL-QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp CSSC-CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred CCCC-CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 8888 888888887 766 566544433 36777777777766 6666 6666666666666666665 555
Q ss_pred cccccc-cceeeCCCCcCcccCchhhhhcCC--------------------------CCcEeeeccc-c----c------
Q 039925 173 FIFNIS-LKWNFLPENSFTGNLPLEIGVTLP--------------------------KGRNYYILLL-A----Q------ 214 (549)
Q Consensus 173 ~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~--------------------------~L~~L~l~~~-~----~------ 214 (549)
.|..++ |+.|++++|.++ .+|..+. .++ +|+.|+++++ + .
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSC-EECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hhcCCCcceEEECcCCccc-cchHHHh-hccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 555555 555555555554 4443332 222 2666666541 1 1
Q ss_pred ------ccccc---------------cCcccccEEEccccccccccChhhhhcc------ccCccEEEcCCCcccccCCC
Q 039925 215 ------KLYWS---------------DVSTTATIIAMGGNQISGTITLGIKKLI------FVNLYALTMVKNKLSGPIPH 267 (549)
Q Consensus 215 ------~l~~l---------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~------~~~L~~L~L~~n~l~~~~p~ 267 (549)
.+..+ ...++|+.|+|++|.+. .+|..+.... .++|+.|+|++|+++ .+
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l-- 743 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL-- 743 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC--
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cc--
Confidence 11111 13358999999999998 5555443320 038999999999998 45
Q ss_pred cCccccC--CccccCeeeccCccccccCCccccCCCCCCEEEccC------CcccccCCCC----------CCCCCCCcc
Q 039925 268 HIASSLG--NLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSR------NKLSASLPPL----------NSQHNHSFS 329 (549)
Q Consensus 268 ~l~~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~------N~l~~~~p~~----------~ls~N~~~~ 329 (549)
|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|.. ++++|+++.
T Consensus 744 --p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~ 820 (876)
T 4ecn_A 744 --SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820 (876)
T ss_dssp --CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB
T ss_pred --hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc
Confidence 56676 89999999999999996 899999999999999976 7788888865 999999999
Q ss_pred cCCcccccccceeeecCCCCCC
Q 039925 330 CPGFEFSVIKLEFQIPGNKKLC 351 (549)
Q Consensus 330 ip~~~~~~l~l~~~~~gn~~~c 351 (549)
+|..+++.|.. +++.+|+...
T Consensus 821 Ip~~l~~~L~~-LdLs~N~l~~ 841 (876)
T 4ecn_A 821 VDEKLTPQLYI-LDIADNPNIS 841 (876)
T ss_dssp CCSCCCSSSCE-EECCSCTTCE
T ss_pred cCHhhcCCCCE-EECCCCCCCc
Confidence 99988766654 7888998654
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=276.31 Aligned_cols=284 Identities=16% Similarity=0.125 Sum_probs=170.6
Q ss_pred CCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceee
Q 039925 33 WRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLF 112 (549)
Q Consensus 33 w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~ 112 (549)
+..|.|+.. +++ .+|..+.. ++++|+|++|.|++..|..|.++++|++|+|++|++++..|..|.++++| ++|+
T Consensus 14 ~~~~~c~~~--~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~ 87 (606)
T 3t6q_A 14 NKTYNCENL--GLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL-DTLV 87 (606)
T ss_dssp TTEEECTTS--CCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTC-CEEE
T ss_pred CceEECCCC--Ccc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCcccc-Ceee
Confidence 345777643 222 34444332 45666666666655555556666666666666666655555556666666 6666
Q ss_pred ecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcc
Q 039925 113 ICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTG 191 (549)
Q Consensus 113 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~ 191 (549)
+++|.+++..|..|+++++|++|++++|.+++..+..+.++++|++|++++|.+.+.....+..++ |++|++++|.+++
T Consensus 88 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 88 LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp CTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred CCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence 666666555555566666666666666666544445555566666666666655543222233344 6666666665554
Q ss_pred cCchhhhhcCCCCc--Eeeeccc-ccc----------cccc---------------------------------------
Q 039925 192 NLPLEIGVTLPKGR--NYYILLL-AQK----------LYWS--------------------------------------- 219 (549)
Q Consensus 192 ~~p~~~~~~l~~L~--~L~l~~~-~~~----------l~~l--------------------------------------- 219 (549)
..|..+. .+++|+ .|+++.+ +.. ++.+
T Consensus 168 ~~~~~~~-~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 168 LSKEDMS-SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp ECHHHHH-TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred cChhhhh-hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChh
Confidence 3344444 555555 4444430 000 0000
Q ss_pred --c-C-cccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCc
Q 039925 220 --D-V-STTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPS 295 (549)
Q Consensus 220 --~-~-~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~ 295 (549)
. . ..+|+.|++++|.+++..+..|..+ ++|+.|++++|.++ .+ |..+..+++|++|++++|.+.+..|.
T Consensus 247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~-~l----p~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCF--SGLQELDLTATHLS-EL----PSGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp GGGGGGGSEEEEEECTTCCCSSCCTTTTTTC--TTCSEEECTTSCCS-CC----CSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred HhchhhcCceeEEEeecCccCccCHHHhccc--cCCCEEeccCCccC-CC----ChhhcccccCCEEECccCCcCcCchh
Confidence 0 0 0167888888888887777778888 88888888888887 34 56677888888888888888866677
Q ss_pred cccCCCCCCEEEccCCcccccCCCC-----------CCCCCCCccc
Q 039925 296 SLGYYQNLMELSVSRNKLSASLPPL-----------NSQHNHSFSC 330 (549)
Q Consensus 296 ~l~~l~~L~~L~Ls~N~l~~~~p~~-----------~ls~N~~~~i 330 (549)
.+..+++|+.|++++|.+++.+|.. ++++|.+..+
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence 7778888888888888777665543 6667766555
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=287.63 Aligned_cols=82 Identities=22% Similarity=0.258 Sum_probs=64.5
Q ss_pred cccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC--------CCCCCCCcccCCccccccccee
Q 039925 271 SSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL--------NSQHNHSFSCPGFEFSVIKLEF 342 (549)
Q Consensus 271 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--------~ls~N~~~~ip~~~~~~l~l~~ 342 (549)
..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|.. ++++|++..+++..+..+.. +
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~-l 552 (844)
T 3j0a_A 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSV-L 552 (844)
T ss_dssp SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCE-E
T ss_pred hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCE-E
Confidence 34667788888888888888777777888999999999999998754433 78888888877777666654 7
Q ss_pred eecCCCCCCCC
Q 039925 343 QIPGNKKLCGG 353 (549)
Q Consensus 343 ~~~gn~~~c~~ 353 (549)
.+.|||+.|..
T Consensus 553 ~l~~Np~~C~c 563 (844)
T 3j0a_A 553 DITHNKFICEC 563 (844)
T ss_dssp EEEEECCCCSS
T ss_pred EecCCCccccc
Confidence 89999999953
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=261.59 Aligned_cols=294 Identities=15% Similarity=0.085 Sum_probs=232.9
Q ss_pred eecCcc-ccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccc
Q 039925 47 KCLTPH-VGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDF 125 (549)
Q Consensus 47 g~lp~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~ 125 (549)
+.+|.. |.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++| ++|++++|.++...+..
T Consensus 58 ~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~l~~~~ 136 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL-TVLVLERNDLSSLPRGI 136 (390)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTT
T ss_pred hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC-CEEECCCCccCcCCHHH
Confidence 467765 6889999999999999997777899999999999999999997777889999999 99999999999766667
Q ss_pred cCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccc----------------cc-cceeeCCCCc
Q 039925 126 IGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFN----------------IS-LKWNFLPENS 188 (549)
Q Consensus 126 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~----------------l~-L~~L~l~~n~ 188 (549)
|.++++|++|++++|.+++..|..|..+++|++|++++|.+++.....+.. .. |+.|++++|.
T Consensus 137 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 216 (390)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC
T ss_pred hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCe
Confidence 899999999999999999877888999999999999999988543222211 12 4555555555
Q ss_pred CcccCchhhhhcCCCCcEeeecc-cccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCC
Q 039925 189 FTGNLPLEIGVTLPKGRNYYILL-LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPH 267 (549)
Q Consensus 189 l~~~~p~~~~~~l~~L~~L~l~~-~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~ 267 (549)
+. .+|.. ..++|+.|++++ .+.....+...++|+.|++++|.+.+..|..+..+ ++|+.|+|++|++++ +
T Consensus 217 l~-~~~~~---~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~-~-- 287 (390)
T 3o6n_A 217 IN-VVRGP---VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM--QRLERLYISNNRLVA-L-- 287 (390)
T ss_dssp CC-EEECC---CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC--SSCCEEECCSSCCCE-E--
T ss_pred ee-ecccc---ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcccc--ccCCEEECCCCcCcc-c--
Confidence 55 23332 346788888887 55556666677899999999999999889999999 999999999999984 3
Q ss_pred cCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC-------CCCCCCCcccCC-ccccccc
Q 039925 268 HIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL-------NSQHNHSFSCPG-FEFSVIK 339 (549)
Q Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-------~ls~N~~~~ip~-~~~~~l~ 339 (549)
|..+..+++|++|+|++|++. .+|..+..+++|+.|++++|+++...... ++++|++..... .++..+.
T Consensus 288 --~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~ 364 (390)
T 3o6n_A 288 --NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVA 364 (390)
T ss_dssp --ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred --CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccchhHHHHHHHHH
Confidence 556788999999999999999 67888899999999999999998642222 888888443211 1122221
Q ss_pred ceeeecCCCCCCCCc
Q 039925 340 LEFQIPGNKKLCGGL 354 (549)
Q Consensus 340 l~~~~~gn~~~c~~~ 354 (549)
- ..+.+++..|...
T Consensus 365 ~-~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 365 R-PAVDDADQHCKID 378 (390)
T ss_dssp T-TTBCCCCSCCCTT
T ss_pred h-hcccccCceeccc
Confidence 1 3456777778653
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-30 Score=276.75 Aligned_cols=302 Identities=15% Similarity=0.092 Sum_probs=241.6
Q ss_pred eecCcc-ccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccc
Q 039925 47 KCLTPH-VGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDF 125 (549)
Q Consensus 47 g~lp~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~ 125 (549)
+.+|+. |.++++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|+.+++| ++|+|++|.++...+..
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~l~~~~ 142 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL-TVLVLERNDLSSLPRGI 142 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTT
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC-CEEEeeCCCCCCCCHHH
Confidence 567664 6889999999999999998888899999999999999999998777788999999 99999999999777777
Q ss_pred cCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccc----------------cc-cceeeCCCCc
Q 039925 126 IGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFN----------------IS-LKWNFLPENS 188 (549)
Q Consensus 126 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~----------------l~-L~~L~l~~n~ 188 (549)
|+++++|++|+|++|.+++..|..|..+++|++|++++|.+.+.....+.. .. |+.|++++|.
T Consensus 143 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 222 (597)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSC
T ss_pred hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCc
Confidence 899999999999999999888889999999999999999998643222211 12 5555555555
Q ss_pred CcccCchhhhhcCCCCcEeeecc-cccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCC
Q 039925 189 FTGNLPLEIGVTLPKGRNYYILL-LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPH 267 (549)
Q Consensus 189 l~~~~p~~~~~~l~~L~~L~l~~-~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~ 267 (549)
+. .++.. ..++|+.|++++ .+.....+...++|+.|++++|.+.+..|..|..+ ++|+.|+|++|.+++ +
T Consensus 223 l~-~~~~~---~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~-l-- 293 (597)
T 3oja_B 223 IN-VVRGP---VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM--QRLERLYISNNRLVA-L-- 293 (597)
T ss_dssp CC-EEECS---CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC--SSCCEEECTTSCCCE-E--
T ss_pred cc-ccccc---cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCc--cCCCEEECCCCCCCC-C--
Confidence 55 33332 236899999987 55666667777899999999999999999999999 999999999999984 3
Q ss_pred cCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC-------CCCCCCCcc-cCCccccccc
Q 039925 268 HIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL-------NSQHNHSFS-CPGFEFSVIK 339 (549)
Q Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-------~ls~N~~~~-ip~~~~~~l~ 339 (549)
|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++..+.. ++++|++.. .+..++..+.
T Consensus 294 --~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~ 370 (597)
T 3oja_B 294 --NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVA 370 (597)
T ss_dssp --ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred --CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCChhHHHHHHHHh
Confidence 566788999999999999999 78888999999999999999998653222 888888432 2222233222
Q ss_pred ceeeecCCCCCCCCccccCcccC
Q 039925 340 LEFQIPGNKKLCGGLDELHLLSC 362 (549)
Q Consensus 340 l~~~~~gn~~~c~~~~~~~~~~~ 362 (549)
. ..+.+++..|+.........|
T Consensus 371 ~-~~~~~~~~~C~~~~~~~~~~c 392 (597)
T 3oja_B 371 R-PAVDDADQHCKIDYQLEHGLC 392 (597)
T ss_dssp T-TTBCCCCCCCCTTCEEETTEE
T ss_pred h-hccccccccCCcchhccCCcc
Confidence 2 346788889986544333444
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=264.56 Aligned_cols=286 Identities=14% Similarity=0.183 Sum_probs=214.7
Q ss_pred CCCCCCCCCCCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCccc
Q 039925 22 SSWSNSIDLCQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANL 101 (549)
Q Consensus 22 ~~w~~~~~~c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 101 (549)
..|......|.|.|+ |+....+++ .+|..+. ++|++|++++|.+++..+..|.++++|++|+|++|++++..|..|
T Consensus 21 ~~~~~~~~~C~~~~~-c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (353)
T 2z80_A 21 ESSNQASLSCDRNGI-CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96 (353)
T ss_dssp ------CCEECTTSE-EECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cCCCccCCCCCCCeE-eeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhc
Confidence 346566678999998 776555555 7787665 589999999999997666689999999999999999997778889
Q ss_pred ccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCc--cccCCCCCCEEecccC-cceecccccccccc
Q 039925 102 SHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPN--TLSNLRSLFYDNINRN-EFSGLIPSFIFNIS 178 (549)
Q Consensus 102 ~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~ 178 (549)
.++++| ++|++++|++++..+..|+++++|++|++++|.++ .+|. .+..+++|++|++++| .+....+..+..++
T Consensus 97 ~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 174 (353)
T 2z80_A 97 SSLGSL-EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174 (353)
T ss_dssp TTCTTC-CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred CCCCCC-CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence 999999 99999999999777777999999999999999999 5555 7899999999999999 47766778899999
Q ss_pred -cceeeCCCCcCcccCchhhhhcCCCCcEeeeccc-ccccc--cccCcccccEEEccccccccccChhhh---hccccCc
Q 039925 179 -LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLL-AQKLY--WSDVSTTATIIAMGGNQISGTITLGIK---KLIFVNL 251 (549)
Q Consensus 179 -L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~-~~~l~--~l~~~~~L~~L~l~~n~l~~~~~~~~~---~l~~~~L 251 (549)
|++|++++|.+++..|..+. .+++|++|+++.+ +..+. .....++|+.|++++|.+++..+..+. .. ..+
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~--~~l 251 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN--SLI 251 (353)
T ss_dssp EEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CC--CCC
T ss_pred CCCEEECCCCCcCccCHHHHh-ccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccccc--chh
Confidence 99999999999977787777 7787777777662 22211 112245777777777777765443332 23 556
Q ss_pred cEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCcc-ccCCCCCCEEEccCCcccccC
Q 039925 252 YALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSS-LGYYQNLMELSVSRNKLSASL 317 (549)
Q Consensus 252 ~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~ 317 (549)
+.++++++.+++..-..+|..+..+++|++|++++|+++ .+|.. |..+++|+.|++++|++++..
T Consensus 252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 667777666654211123566777778888888888887 55554 477788888888888777643
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-30 Score=271.37 Aligned_cols=275 Identities=17% Similarity=0.134 Sum_probs=170.6
Q ss_pred cCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeeccccccc-ccccccC
Q 039925 49 LTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSG-QLLDFIG 127 (549)
Q Consensus 49 lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~-~~~~~~~ 127 (549)
.|..|.++++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|.. .+++| ++|++++|.+++ .+|..|+
T Consensus 37 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L-~~L~L~~N~l~~~~~p~~~~ 112 (520)
T 2z7x_B 37 WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNL-KHLDLSFNAFDALPICKEFG 112 (520)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCC-SEEECCSSCCSSCCCCGGGG
T ss_pred ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCc-cEEeccCCccccccchhhhc
Confidence 3456777777888888877777666777777777888888777777 56655 67777 777777777776 3567777
Q ss_pred CCCCCCEEEeecceeeeeCCccccCCCCC--CEEecccCcc--eecccccccc---------------------------
Q 039925 128 NPSAIQVMIFKENSLEGKFPNTLSNLRSL--FYDNINRNEF--SGLIPSFIFN--------------------------- 176 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~p~~~~~--------------------------- 176 (549)
++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 113 ~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l 189 (520)
T 2z7x_B 113 NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189 (520)
T ss_dssp GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTC
T ss_pred cCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcc
Confidence 77777777777777653 234444444 5555555544 2222222211
Q ss_pred --------------------------------------------------------cc-cceeeCCCCcCcccCchhhh-
Q 039925 177 --------------------------------------------------------IS-LKWNFLPENSFTGNLPLEIG- 198 (549)
Q Consensus 177 --------------------------------------------------------l~-L~~L~l~~n~l~~~~p~~~~- 198 (549)
.+ |++|++++|.+++.+|..++
T Consensus 190 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 269 (520)
T 2z7x_B 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269 (520)
T ss_dssp SEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCC
T ss_pred cceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhh
Confidence 11 44455555555555555441
Q ss_pred ---hcCCCCcEeee--------------------------cc-cccccccccCcccccEEEccccccccccChhhhhccc
Q 039925 199 ---VTLPKGRNYYI--------------------------LL-LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIF 248 (549)
Q Consensus 199 ---~~l~~L~~L~l--------------------------~~-~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 248 (549)
..+++|+.+++ ++ .+.........++|++|++++|.+++..|..+..+
T Consensus 270 ~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-- 347 (520)
T 2z7x_B 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL-- 347 (520)
T ss_dssp CCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCC--
T ss_pred cccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccC--
Confidence 13444444443 33 11111111344577888888888877777777777
Q ss_pred cCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCc-cccCCCCCCEEEccCCcccccCCCC-------
Q 039925 249 VNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPS-SLGYYQNLMELSVSRNKLSASLPPL------- 320 (549)
Q Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~------- 320 (549)
++|+.|++++|++++.. .+|..+..+++|++|++++|++++.+|. .+..+++|+.|++++|++++.+|..
T Consensus 348 ~~L~~L~L~~N~l~~l~--~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~ 425 (520)
T 2z7x_B 348 TELETLILQMNQLKELS--KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV 425 (520)
T ss_dssp SSCCEEECCSSCCCBHH--HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCE
T ss_pred CCCCEEEccCCccCccc--cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCE
Confidence 77888888888777411 1245677777777777777777754554 3666777777777777776544322
Q ss_pred -CCCCCCCcccCCcc
Q 039925 321 -NSQHNHSFSCPGFE 334 (549)
Q Consensus 321 -~ls~N~~~~ip~~~ 334 (549)
++++|++..+|..+
T Consensus 426 L~Ls~N~l~~ip~~~ 440 (520)
T 2z7x_B 426 LDLHSNKIKSIPKQV 440 (520)
T ss_dssp EECCSSCCCCCCGGG
T ss_pred EECCCCcccccchhh
Confidence 66666666666655
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=250.92 Aligned_cols=246 Identities=21% Similarity=0.308 Sum_probs=209.5
Q ss_pred CCCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccc
Q 039925 30 LCQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109 (549)
Q Consensus 30 ~c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 109 (549)
.|+|+.+.|+.. +++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++| +
T Consensus 30 ~c~l~~l~~~~~--~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~ 103 (330)
T 1xku_A 30 QCHLRVVQCSDL--GLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL-E 103 (330)
T ss_dssp EEETTEEECTTS--CCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC-C
T ss_pred cCCCeEEEecCC--Ccc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC-C
Confidence 368999999653 233 5666554 689999999999997666789999999999999999997778999999999 9
Q ss_pred eeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCccee--cccccccccc-cceeeCCC
Q 039925 110 KLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSG--LIPSFIFNIS-LKWNFLPE 186 (549)
Q Consensus 110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~-L~~L~l~~ 186 (549)
+|++++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.. ..+..+..++ |++|++++
T Consensus 104 ~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 104 RLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp EEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred EEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 9999999998 4555443 799999999999997777789999999999999999864 6677888898 99999999
Q ss_pred CcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCC
Q 039925 187 NSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIP 266 (549)
Q Consensus 187 n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p 266 (549)
|.++ .+|..+. ++|+.|++++|.+++..+..+..+ ++|+.|++++|.+++..
T Consensus 181 n~l~-~l~~~~~------------------------~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~- 232 (330)
T 1xku_A 181 TNIT-TIPQGLP------------------------PSLTELHLDGNKITKVDAASLKGL--NNLAKLGLSFNSISAVD- 232 (330)
T ss_dssp SCCC-SCCSSCC------------------------TTCSEEECTTSCCCEECTGGGTTC--TTCCEEECCSSCCCEEC-
T ss_pred Cccc-cCCcccc------------------------ccCCEEECCCCcCCccCHHHhcCC--CCCCEEECCCCcCceeC-
Confidence 9988 4554432 478999999999998888899999 99999999999998644
Q ss_pred CcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCccccc
Q 039925 267 HHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSAS 316 (549)
Q Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 316 (549)
+..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++.
T Consensus 233 ---~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 233 ---NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp ---TTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred ---hhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc
Confidence 457888999999999999999 7888999999999999999999863
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=271.16 Aligned_cols=285 Identities=16% Similarity=0.172 Sum_probs=189.5
Q ss_pred CcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeee
Q 039925 34 RGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113 (549)
Q Consensus 34 ~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~L 113 (549)
..+.|+. .+++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..+++| ++|++
T Consensus 34 ~~l~ls~--~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L 107 (562)
T 3a79_B 34 SMVDYSN--RNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL-EYLDV 107 (562)
T ss_dssp CEEECTT--SCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC-CEEEC
T ss_pred cEEEcCC--CCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC-CEEEC
Confidence 3466654 3344 4666554 678888888888886566778888888888888888886667778888888 88888
Q ss_pred cccccccccccccCCCCCCCEEEeecceeee-eCCccccCCCCCCEEecccCcceecccccccccc-c--ceeeCCCCcC
Q 039925 114 CETHLSGQLLDFIGNPSAIQVMIFKENSLEG-KFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-L--KWNFLPENSF 189 (549)
Q Consensus 114 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L--~~L~l~~n~l 189 (549)
++|+++ .+|.. .+++|++|++++|.+++ ..|..|.++++|++|++++|.+.+. .+..++ | ++|++++|.+
T Consensus 108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 888887 44544 67888888888888875 2456788888888888888777642 233333 3 5555555555
Q ss_pred --cccCchhhhh-----------------------------------------------------cC-------------
Q 039925 190 --TGNLPLEIGV-----------------------------------------------------TL------------- 201 (549)
Q Consensus 190 --~~~~p~~~~~-----------------------------------------------------~l------------- 201 (549)
++..|..+.. .+
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 3222222210 00
Q ss_pred --------------CCCcEeeeccc-cc----------------------------------------------------
Q 039925 202 --------------PKGRNYYILLL-AQ---------------------------------------------------- 214 (549)
Q Consensus 202 --------------~~L~~L~l~~~-~~---------------------------------------------------- 214 (549)
++|++|+++++ +.
T Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence 13333333320 00
Q ss_pred ---ccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccc
Q 039925 215 ---KLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQG 291 (549)
Q Consensus 215 ---~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (549)
........++|++|++++|.+++..|..+..+ ++|+.|++++|++++.. .+|..+..+++|++|++++|++++
T Consensus 342 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL--KRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSC--SSCCEEECCSSCCCBTT--HHHHTTTTCTTCCEEECTTSCCBS
T ss_pred CcccccCccCCCCceEEECCCCccccchhhhhccc--CCCCEEECCCCCcCCcc--cchhhhcCCCCCCEEECCCCcCCC
Confidence 00000344688899999999988888888888 88999999999887421 224567888888888888888886
Q ss_pred cCCc-cccCCCCCCEEEccCCcccccCCCC--------CCCCCCCcccCCcc
Q 039925 292 NLPS-SLGYYQNLMELSVSRNKLSASLPPL--------NSQHNHSFSCPGFE 334 (549)
Q Consensus 292 ~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~--------~ls~N~~~~ip~~~ 334 (549)
.+|. .+..+++|+.|++++|++++.+|.. ++++|++..+|..+
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~ 469 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDV 469 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTT
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhh
Confidence 4554 4677788888888888877654432 66777766776655
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=251.89 Aligned_cols=245 Identities=22% Similarity=0.308 Sum_probs=208.2
Q ss_pred CCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccce
Q 039925 31 CQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110 (549)
Q Consensus 31 c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~ 110 (549)
|+|+.+.|+.. +++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|..+++| ++
T Consensus 33 c~l~~l~~~~~--~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~ 106 (332)
T 2ft3_A 33 CHLRVVQCSDL--GLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL-QK 106 (332)
T ss_dssp EETTEEECCSS--CCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC-CE
T ss_pred ccCCEEECCCC--Ccc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC-CE
Confidence 68999999653 333 6777663 689999999999997778899999999999999999997778899999999 99
Q ss_pred eeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCccee--cccccccccccceeeCCCCc
Q 039925 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSG--LIPSFIFNISLKWNFLPENS 188 (549)
Q Consensus 111 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~L~~L~l~~n~ 188 (549)
|++++|.++ .+|..+. ++|++|++++|.++...+..|..+++|++|++++|.+.. ..+..+..+.|++|++++|.
T Consensus 107 L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~ 183 (332)
T 2ft3_A 107 LYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183 (332)
T ss_dssp EECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSB
T ss_pred EECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCC
Confidence 999999998 4555443 899999999999996666679999999999999999963 56777777789999999999
Q ss_pred CcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCc
Q 039925 189 FTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHH 268 (549)
Q Consensus 189 l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~ 268 (549)
++ .+|..+. ++|+.|++++|.+++..+..+..+ ++|+.|++++|.+++..
T Consensus 184 l~-~l~~~~~------------------------~~L~~L~l~~n~i~~~~~~~l~~l--~~L~~L~L~~N~l~~~~--- 233 (332)
T 2ft3_A 184 LT-GIPKDLP------------------------ETLNELHLDHNKIQAIELEDLLRY--SKLYRLGLGHNQIRMIE--- 233 (332)
T ss_dssp CS-SCCSSSC------------------------SSCSCCBCCSSCCCCCCTTSSTTC--TTCSCCBCCSSCCCCCC---
T ss_pred CC-ccCcccc------------------------CCCCEEECCCCcCCccCHHHhcCC--CCCCEEECCCCcCCcCC---
Confidence 98 4665432 378889999999998888888888 99999999999998544
Q ss_pred CccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCccccc
Q 039925 269 IASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSAS 316 (549)
Q Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 316 (549)
+..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++.
T Consensus 234 -~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 234 -NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp -TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred -hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence 457888999999999999999 7888899999999999999999863
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-29 Score=266.04 Aligned_cols=143 Identities=20% Similarity=0.157 Sum_probs=110.3
Q ss_pred eecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeeccccccccccccc
Q 039925 47 KCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFI 126 (549)
Q Consensus 47 g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~ 126 (549)
+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|..+++| ++|++++|.++...+..|
T Consensus 42 ~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~l~~~~~ 120 (570)
T 2z63_A 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL-QKLVAVETNLASLENFPI 120 (570)
T ss_dssp EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC-CEEECTTSCCCCSTTCSC
T ss_pred ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc-ccccccccccccCCCccc
Confidence 3345578888888888888888887667788888888888888888886666778888888 888888888886666678
Q ss_pred CCCCCCCEEEeecceeee-eCCccccCCCCCCEEecccCcceecccccccccc-c----ceeeCCCCcCc
Q 039925 127 GNPSAIQVMIFKENSLEG-KFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-L----KWNFLPENSFT 190 (549)
Q Consensus 127 ~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L----~~L~l~~n~l~ 190 (549)
+++++|++|++++|.+++ .+|..|.++++|++|++++|.+.+..+..+..++ | +.|++++|.++
T Consensus 121 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce
Confidence 888888888888888875 3688888888888888888887766665555555 5 55555555544
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=269.47 Aligned_cols=300 Identities=16% Similarity=0.128 Sum_probs=184.1
Q ss_pred cCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccc-----cCCc----ccccccCccceeeecccccc
Q 039925 49 LTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSG-----KIPA----NLSHCSNLLTKLFICETHLS 119 (549)
Q Consensus 49 lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-----~~p~----~l~~l~~L~~~L~Ls~n~l~ 119 (549)
.|..|..+++|++|++++|.+++..|..|.++++|++|++++|...+ .+|. .+..+++| ++|++++|.++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L-~~L~l~~n~l~ 342 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL-EHLNMEDNDIP 342 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTC-CEEECCSCCBC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCC-CEEECCCCccC
Confidence 34445555555555555555554444444444444444444433221 1221 34455555 66666666666
Q ss_pred cccccccCCCCCCCEEEeecc----------------------------eeeeeCCccccCCCCCCEEecccCcceeccc
Q 039925 120 GQLLDFIGNPSAIQVMIFKEN----------------------------SLEGKFPNTLSNLRSLFYDNINRNEFSGLIP 171 (549)
Q Consensus 120 ~~~~~~~~~l~~L~~L~L~~n----------------------------~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 171 (549)
+..+..|.++++|++|++++| ++++..|..|..+++|++|++++|.+.+.+|
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 555555555555555555444 3333344445555555555555555544333
Q ss_pred -ccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeeccc-cccc----ccccCcccccEEEccccccccccChhhh
Q 039925 172 -SFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLL-AQKL----YWSDVSTTATIIAMGGNQISGTITLGIK 244 (549)
Q Consensus 172 -~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~-~~~l----~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 244 (549)
..+.+++ |++|++++|++.+..+..+. .+++|+.|+++.+ +..+ ..+...++|+.|++++|++++..+..+.
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccccCcccccEEecCCCCcceeChhhhh-cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 3444454 55555555555433333333 4555555555541 1111 1233446899999999999987777888
Q ss_pred hccccCccEEEcCCCcccccCCCcC----ccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC
Q 039925 245 KLIFVNLYALTMVKNKLSGPIPHHI----ASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL 320 (549)
Q Consensus 245 ~l~~~~L~~L~L~~n~l~~~~p~~l----~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 320 (549)
.+ ++|+.|++++|++++..+..+ +..+..+++|++|+|++|+++...+..|.++++|+.|+|++|++++..+..
T Consensus 502 ~l--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 579 (680)
T 1ziw_A 502 GL--EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579 (680)
T ss_dssp TC--TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cc--cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhH
Confidence 88 999999999999885422221 234788999999999999999433456899999999999999999644432
Q ss_pred ----------CCCCCCCcccCCccc----ccccceeeecCCCCCCCC
Q 039925 321 ----------NSQHNHSFSCPGFEF----SVIKLEFQIPGNKKLCGG 353 (549)
Q Consensus 321 ----------~ls~N~~~~ip~~~~----~~l~l~~~~~gn~~~c~~ 353 (549)
++++|++..+|+..+ ..+.. +.+.|||+.|..
T Consensus 580 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~-l~l~~N~~~c~c 625 (680)
T 1ziw_A 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE-LDMRFNPFDCTC 625 (680)
T ss_dssp TTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSE-EECTTCCCCBCC
T ss_pred hCCCCCCCEEECCCCcCCccChhHhcccccccCE-EEccCCCcccCC
Confidence 889999988888653 33433 789999999964
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=249.39 Aligned_cols=250 Identities=17% Similarity=0.179 Sum_probs=213.2
Q ss_pred CCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccc--cCCcccccccCcc
Q 039925 31 CQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSG--KIPANLSHCSNLL 108 (549)
Q Consensus 31 c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~ 108 (549)
|.|.++.|+.. +++ .+|..+. ++|++|+|++|.++...+..|.++++|++|+|++|.++. ..|..+..+++|
T Consensus 7 C~~~~l~c~~~--~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L- 80 (306)
T 2z66_A 7 CSGTEIRCNSK--GLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL- 80 (306)
T ss_dssp EETTEEECCSS--CCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC-
T ss_pred eCCCEEEcCCC--Ccc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccccc-
Confidence 79999999753 333 5666553 689999999999994334458999999999999999983 336778889999
Q ss_pred ceeeecccccccccccccCCCCCCCEEEeecceeeeeCC-ccccCCCCCCEEecccCcceecccccccccc-cceeeCCC
Q 039925 109 TKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFP-NTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPE 186 (549)
Q Consensus 109 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~ 186 (549)
++|++++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..++ |++|++++
T Consensus 81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 99999999998 467779999999999999999995544 5799999999999999999988889999999 99999999
Q ss_pred CcCcc-cCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccC
Q 039925 187 NSFTG-NLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPI 265 (549)
Q Consensus 187 n~l~~-~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 265 (549)
|.+++ .+|..+. .+ ++|+.|++++|.+++..|..+..+ ++|+.|++++|.+++..
T Consensus 160 n~l~~~~~~~~~~-~l---------------------~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 160 NSFQENFLPDIFT-EL---------------------RNLTFLDLSQCQLEQLSPTAFNSL--SSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp CEEGGGEECSCCT-TC---------------------TTCCEEECTTSCCCEECTTTTTTC--TTCCEEECTTSCCSBCC
T ss_pred CccccccchhHHh-hC---------------------cCCCEEECCCCCcCCcCHHHhcCC--CCCCEEECCCCccCccC
Confidence 99986 3555443 22 378899999999998888899999 99999999999998543
Q ss_pred CCcCccccCCccccCeeeccCccccccCCccccCCC-CCCEEEccCCcccc
Q 039925 266 PHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQ-NLMELSVSRNKLSA 315 (549)
Q Consensus 266 p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~ 315 (549)
+..+..+++|++|+|++|++++..|..+..++ +|+.|+|++|++++
T Consensus 216 ----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 216 ----TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp ----SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ----hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 45688999999999999999988898999885 99999999999986
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=281.23 Aligned_cols=261 Identities=15% Similarity=0.104 Sum_probs=176.7
Q ss_pred eecCccccCCCCCCEEEccCCcceecC-CccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccc
Q 039925 47 KCLTPHVGNFGYLRFINLVDNNFRGEI-PEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDF 125 (549)
Q Consensus 47 g~lp~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~ 125 (549)
+..|..|.++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|..|.++++| ++|+|++|.+++..|..
T Consensus 38 ~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L-~~L~Ls~n~l~~~~~~~ 116 (844)
T 3j0a_A 38 TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL-FELRLYFCGLSDAVLKD 116 (844)
T ss_dssp EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC-CCEECTTCCCSSCCSTT
T ss_pred ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc-CEeeCcCCCCCcccccC
Confidence 455778888888999999888655455 7788888999999999998887778888888888 89999999888766554
Q ss_pred --cCCCCCCCEEEeecceeeeeCC-ccccCCCCCCEEecccCcceeccccccccc--c-cceeeCCCCcCcccCchhhhh
Q 039925 126 --IGNPSAIQVMIFKENSLEGKFP-NTLSNLRSLFYDNINRNEFSGLIPSFIFNI--S-LKWNFLPENSFTGNLPLEIGV 199 (549)
Q Consensus 126 --~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l--~-L~~L~l~~n~l~~~~p~~~~~ 199 (549)
|+++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+.+..+..+..+ + |+.|++++|.+.+..|..+.
T Consensus 117 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~- 195 (844)
T 3j0a_A 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG- 195 (844)
T ss_dssp CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-
T ss_pred ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchh-
Confidence 8888999999999998886544 578888999999999998888777777766 4 77777777777766555443
Q ss_pred cCCC------CcEeeecccc-c--------------cccccc--------------------------CcccccEEEccc
Q 039925 200 TLPK------GRNYYILLLA-Q--------------KLYWSD--------------------------VSTTATIIAMGG 232 (549)
Q Consensus 200 ~l~~------L~~L~l~~~~-~--------------~l~~l~--------------------------~~~~L~~L~l~~ 232 (549)
.+++ |+.|+++.+. . .+..+. ..++|+.|++++
T Consensus 196 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC
Confidence 3332 6666666420 0 000000 013566666666
Q ss_pred cccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCc
Q 039925 233 NQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNK 312 (549)
Q Consensus 233 n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 312 (549)
|.+.+..+..+..+ ++|+.|+|++|.+++.. |..|..+++|++|+|++|.+++..|..|..+++|+.|++++|+
T Consensus 276 n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 276 GFVFSLNSRVFETL--KDLKVLNLAYNKINKIA----DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349 (844)
T ss_dssp CCCCEECSCCSSSC--CCCCEEEEESCCCCEEC----TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC
T ss_pred CcccccChhhhhcC--CCCCEEECCCCcCCCCC----hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC
Confidence 66665555555555 56666666666655433 3345555555555555555554445555555555555555555
Q ss_pred ccc
Q 039925 313 LSA 315 (549)
Q Consensus 313 l~~ 315 (549)
+++
T Consensus 350 i~~ 352 (844)
T 3j0a_A 350 IAI 352 (844)
T ss_dssp CCC
T ss_pred CCc
Confidence 544
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=270.07 Aligned_cols=274 Identities=18% Similarity=0.153 Sum_probs=173.3
Q ss_pred CCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccce
Q 039925 31 CQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110 (549)
Q Consensus 31 c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~ 110 (549)
|.+..|.|+.. +++ .+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..|..+.++++| ++
T Consensus 4 ~~~~~~~cs~~--~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~ 77 (680)
T 1ziw_A 4 VSHEVADCSHL--KLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML-KV 77 (680)
T ss_dssp CBSSEEECCSS--CCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTC-CE
T ss_pred eECCeeECCCC--Ccc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCc-CE
Confidence 44555667542 222 4554443 466666666666664444456666666666666666665556666666666 66
Q ss_pred eeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcC
Q 039925 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSF 189 (549)
Q Consensus 111 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l 189 (549)
|++++|.++...+..|+++++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..+..++ |++|++++|.+
T Consensus 78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred EECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 66666666655445566666666666666666655455666666666666666666665566666666 66666666666
Q ss_pred cccCchhhh-hcCCCCcEeeeccc-cc-----------cccccc------------------CcccccEEEccccccccc
Q 039925 190 TGNLPLEIG-VTLPKGRNYYILLL-AQ-----------KLYWSD------------------VSTTATIIAMGGNQISGT 238 (549)
Q Consensus 190 ~~~~p~~~~-~~l~~L~~L~l~~~-~~-----------~l~~l~------------------~~~~L~~L~l~~n~l~~~ 238 (549)
++..+..+. ..+++|+.|+++.+ +. .+..+. ..++|+.|++++|.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence 644443332 13456666666541 11 110000 114688888888888887
Q ss_pred cChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCccc
Q 039925 239 ITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 239 ~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 314 (549)
.|..+..+..++|+.|++++|.+++.. |..+..+++|++|++++|++.+..|..|..+++|+.|++++|...
T Consensus 238 ~~~~~~~l~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 238 SNTTFLGLKWTNLTMLDLSYNNLNVVG----NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp CTTTTGGGGGSCCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred ChhHhhccCcCCCCEEECCCCCcCccC----cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence 777777762233888888888887544 456778888888888888888777777777788888887776544
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=264.33 Aligned_cols=293 Identities=15% Similarity=0.121 Sum_probs=233.9
Q ss_pred eEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccc-cc
Q 039925 45 INKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQ-LL 123 (549)
Q Consensus 45 v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~-~~ 123 (549)
+.+..|..|.++++|++|+|++|.+++..|+.|.++++|++|+|++|+++ .+|.. .+++| ++|++++|++++. .|
T Consensus 64 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L-~~L~Ls~N~l~~l~~p 139 (562)
T 3a79_B 64 ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASL-RHLDLSFNDFDVLPVC 139 (562)
T ss_dssp CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTC-SEEECCSSCCSBCCCC
T ss_pred ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccC-CEEECCCCCccccCch
Confidence 33444568999999999999999999888999999999999999999999 78876 89999 9999999999874 46
Q ss_pred cccCCCCCCCEEEeecceeeeeCCccccCCCCC--CEEecccCcc--eecccccccc-----------------------
Q 039925 124 DFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSL--FYDNINRNEF--SGLIPSFIFN----------------------- 176 (549)
Q Consensus 124 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~p~~~~~----------------------- 176 (549)
..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ ++..|..+..
T Consensus 140 ~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~ 216 (562)
T 3a79_B 140 KEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216 (562)
T ss_dssp GGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEE
T ss_pred HhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhc
Confidence 899999999999999999985 345666666 9999999988 5555444332
Q ss_pred ---c--------------------------------------------------------ccceeeCCCCcCcccCchhh
Q 039925 177 ---I--------------------------------------------------------SLKWNFLPENSFTGNLPLEI 197 (549)
Q Consensus 177 ---l--------------------------------------------------------~L~~L~l~~n~l~~~~p~~~ 197 (549)
+ .|++|++++|.+++.+|..+
T Consensus 217 ~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~ 296 (562)
T 3a79_B 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296 (562)
T ss_dssp ESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCC
T ss_pred ccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchh
Confidence 1 25566666676766666544
Q ss_pred h----------------------------------------------------hcCCCCcEeeeccc-ccc--cccccCc
Q 039925 198 G----------------------------------------------------VTLPKGRNYYILLL-AQK--LYWSDVS 222 (549)
Q Consensus 198 ~----------------------------------------------------~~l~~L~~L~l~~~-~~~--l~~l~~~ 222 (549)
+ ..+++|++|+++++ +.. ...+...
T Consensus 297 ~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 376 (562)
T 3a79_B 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376 (562)
T ss_dssp CCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSC
T ss_pred hhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhccc
Confidence 1 35678888888873 333 2234456
Q ss_pred ccccEEEcccccccc--ccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCC
Q 039925 223 TTATIIAMGGNQISG--TITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYY 300 (549)
Q Consensus 223 ~~L~~L~l~~n~l~~--~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 300 (549)
++|+.|++++|++++ .+|..+..+ ++|+.|++++|.+++.+| +..+..+++|++|++++|++++.+|..+.
T Consensus 377 ~~L~~L~L~~N~l~~~~~~~~~~~~l--~~L~~L~l~~N~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-- 449 (562)
T 3a79_B 377 KRLQTLILQRNGLKNFFKVALMTKNM--SSLETLDVSLNSLNSHAY---DRTCAWAESILVLNLSSNMLTGSVFRCLP-- 449 (562)
T ss_dssp SSCCEEECCSSCCCBTTHHHHTTTTC--TTCCEEECTTSCCBSCCS---SCCCCCCTTCCEEECCSSCCCGGGGSSCC--
T ss_pred CCCCEEECCCCCcCCcccchhhhcCC--CCCCEEECCCCcCCCccC---hhhhcCcccCCEEECCCCCCCcchhhhhc--
Confidence 799999999999997 345678888 999999999999997675 34688899999999999999977776554
Q ss_pred CCCCEEEccCCcccccCCCC----------CCCCCCCcccCCcc---cccccceeeecCCCCCCCC
Q 039925 301 QNLMELSVSRNKLSASLPPL----------NSQHNHSFSCPGFE---FSVIKLEFQIPGNKKLCGG 353 (549)
Q Consensus 301 ~~L~~L~Ls~N~l~~~~p~~----------~ls~N~~~~ip~~~---~~~l~l~~~~~gn~~~c~~ 353 (549)
++|+.|++++|+++ .+|.. ++++|++..+|... +..+.. +.+.+||+.|..
T Consensus 450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~-L~l~~N~~~c~c 513 (562)
T 3a79_B 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQY-IWLHDNPWDCTC 513 (562)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCC-EECCSCCBCCCH
T ss_pred CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCE-EEecCCCcCCCc
Confidence 79999999999999 46653 89999999999984 333333 789999999853
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=262.49 Aligned_cols=163 Identities=13% Similarity=0.129 Sum_probs=141.8
Q ss_pred CCCCC----CcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccc
Q 039925 29 DLCQW----RGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHC 104 (549)
Q Consensus 29 ~~c~w----~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 104 (549)
++|.+ ..|.|+. .+++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++
T Consensus 5 ~~c~~~~~~~~~~c~~--~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l 79 (606)
T 3vq2_A 5 NPCIEVVPNITYQCMD--QKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL 79 (606)
T ss_dssp -CCEEEETTTEEECTT--SCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCceecCCCCceEccC--CCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhch
Confidence 56765 3577754 3343 6777665 789999999999998888899999999999999999998778899999
Q ss_pred cCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCccee-cccccccccc-ccee
Q 039925 105 SNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSG-LIPSFIFNIS-LKWN 182 (549)
Q Consensus 105 ~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~-L~~L 182 (549)
++| ++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.+++ |++|
T Consensus 80 ~~L-~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 80 HHL-SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp TTC-CEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred hhc-CEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence 999 999999999998889999999999999999999997777889999999999999999986 5799999999 9999
Q ss_pred eCCCCcCcccCchhh
Q 039925 183 FLPENSFTGNLPLEI 197 (549)
Q Consensus 183 ~l~~n~l~~~~p~~~ 197 (549)
++++|.+++..+..+
T Consensus 159 ~Ls~n~l~~~~~~~~ 173 (606)
T 3vq2_A 159 DLSYNYIQTITVNDL 173 (606)
T ss_dssp ECCSSCCCEECTTTT
T ss_pred EccCCcceecChhhh
Confidence 999999886555433
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-29 Score=264.50 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=134.0
Q ss_pred CCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEE
Q 039925 57 GYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMI 136 (549)
Q Consensus 57 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 136 (549)
++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..+++| ++|++++|.+++..|..|+++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL-EHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccC-CEEECCCCccCccCHHHhccCCCCcEEE
Confidence 589999999999998888999999999999999999998788899999999 9999999999988888899999999999
Q ss_pred eecceeee-eCCccccCCCCCCEEecccCcceeccc-ccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeec
Q 039925 137 FKENSLEG-KFPNTLSNLRSLFYDNINRNEFSGLIP-SFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYIL 210 (549)
Q Consensus 137 L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~ 210 (549)
+++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+..++ |++|++++|.+++..|..+. .+++|+.|+++
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~ 180 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIHHLTLH 180 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh-ccccCceEecc
Confidence 99999986 357789999999999999998544554 6899999 99999999999987777765 55555555543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=252.99 Aligned_cols=247 Identities=17% Similarity=0.203 Sum_probs=213.6
Q ss_pred CCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceee
Q 039925 33 WRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLF 112 (549)
Q Consensus 33 w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~ 112 (549)
|..|.|... +++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..|.++++| ++|+
T Consensus 56 ~~~v~c~~~--~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~ 129 (452)
T 3zyi_A 56 FSKVVCTRR--GLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL-NTLE 129 (452)
T ss_dssp SCEEECCSS--CCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEE
T ss_pred CcEEEECCC--CcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccC-CEEE
Confidence 567888642 333 5676554 689999999999998889999999999999999999998778899999999 9999
Q ss_pred ecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccC-cceecccccccccc-cceeeCCCCcCc
Q 039925 113 ICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRN-EFSGLIPSFIFNIS-LKWNFLPENSFT 190 (549)
Q Consensus 113 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~-L~~L~l~~n~l~ 190 (549)
|++|+++...+..|..+++|++|+|++|.++...+..|.++++|++|++++| .+....+..|.+++ |++|++++|.++
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 9999999888888999999999999999999777778999999999999995 45544455788898 999999999998
Q ss_pred ccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCc
Q 039925 191 GNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIA 270 (549)
Q Consensus 191 ~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~ 270 (549)
.+|. +. ..++|+.|++++|.+++..|..|..+ ++|+.|+|++|++++.. +
T Consensus 210 -~~~~-~~----------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~----~ 259 (452)
T 3zyi_A 210 -DMPN-LT----------------------PLVGLEELEMSGNHFPEIRPGSFHGL--SSLKKLWVMNSQVSLIE----R 259 (452)
T ss_dssp -SCCC-CT----------------------TCTTCCEEECTTSCCSEECGGGGTTC--TTCCEEECTTSCCCEEC----T
T ss_pred -cccc-cc----------------------ccccccEEECcCCcCcccCcccccCc--cCCCEEEeCCCcCceEC----H
Confidence 3442 21 22479999999999999889999999 99999999999998655 5
Q ss_pred cccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccc
Q 039925 271 SSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 271 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 678999999999999999997677788999999999999999874
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-29 Score=262.59 Aligned_cols=283 Identities=14% Similarity=0.131 Sum_probs=193.4
Q ss_pred ceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecc
Q 039925 36 VTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICE 115 (549)
Q Consensus 36 v~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~ 115 (549)
+.|+. .+++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..+++| ++|++++
T Consensus 5 l~ls~--n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~ 78 (520)
T 2z7x_B 5 VDRSK--NGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL-EYLDLSH 78 (520)
T ss_dssp EECTT--SCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTC-CEEECCS
T ss_pred EecCC--CCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCC-CEEecCC
Confidence 44543 3444 5787766 899999999999997777899999999999999999998778999999999 9999999
Q ss_pred cccccccccccCCCCCCCEEEeecceeee-eCCccccCCCCCCEEecccCcceecccccccccc-c--ceeeCCCCcC--
Q 039925 116 THLSGQLLDFIGNPSAIQVMIFKENSLEG-KFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-L--KWNFLPENSF-- 189 (549)
Q Consensus 116 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L--~~L~l~~n~l-- 189 (549)
|+++ .+|.. .+++|++|+|++|.+++ .+|..|+++++|++|++++|.+.+ ..+..++ | ++|++++|.+
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 9998 45655 89999999999999986 478999999999999999999986 3566666 6 9999999998
Q ss_pred cccCchhhhh-------------------------cCCCCcEeeecccc------------------ccccccc------
Q 039925 190 TGNLPLEIGV-------------------------TLPKGRNYYILLLA------------------QKLYWSD------ 220 (549)
Q Consensus 190 ~~~~p~~~~~-------------------------~l~~L~~L~l~~~~------------------~~l~~l~------ 220 (549)
.+..|..+.. .+++|+.|+++.+. ..++.+.
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccccc
Confidence 5566655541 24455555554321 1111100
Q ss_pred ------------CcccccEEEccccccccccChhh-----hhccccCccEEEcCCCcccccCCC-c--------------
Q 039925 221 ------------VSTTATIIAMGGNQISGTITLGI-----KKLIFVNLYALTMVKNKLSGPIPH-H-------------- 268 (549)
Q Consensus 221 ------------~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~~~L~~L~L~~n~l~~~~p~-~-------------- 268 (549)
..++|+.|++++|.+.+.+|..+ ..+ ++|+.+++++|.+ .+|. .
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l--~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL--KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCC--CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccC--ceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence 01267777777777776666655 344 4444444444333 1110 0
Q ss_pred -----C-ccc-cCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccc--cCCC-------C---CCCCCCCcc
Q 039925 269 -----I-ASS-LGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSA--SLPP-------L---NSQHNHSFS 329 (549)
Q Consensus 269 -----l-~~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~-------~---~ls~N~~~~ 329 (549)
+ +.. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++ .+|. . ++++|++..
T Consensus 309 l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred cCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 0 000 1455666666666666665566666666666666666666654 2221 1 666666555
Q ss_pred -cCCcc
Q 039925 330 -CPGFE 334 (549)
Q Consensus 330 -ip~~~ 334 (549)
+|...
T Consensus 389 ~l~~~~ 394 (520)
T 2z7x_B 389 DEKKGD 394 (520)
T ss_dssp CGGGCS
T ss_pred ccccch
Confidence 65543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=250.40 Aligned_cols=247 Identities=17% Similarity=0.199 Sum_probs=213.6
Q ss_pred CCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceee
Q 039925 33 WRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLF 112 (549)
Q Consensus 33 w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~ 112 (549)
|..|.|... +++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++| ++|+
T Consensus 45 ~~~v~c~~~--~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L-~~L~ 118 (440)
T 3zyj_A 45 FSKVICVRK--NLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL-NTLE 118 (440)
T ss_dssp SCEEECCSC--CCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSC-CEEE
T ss_pred CCEEEeCCC--CcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccC-CEEE
Confidence 567778642 333 6777665 689999999999998888899999999999999999997777889999999 9999
Q ss_pred ecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCc-ceecccccccccc-cceeeCCCCcCc
Q 039925 113 ICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNE-FSGLIPSFIFNIS-LKWNFLPENSFT 190 (549)
Q Consensus 113 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~-L~~L~l~~n~l~ 190 (549)
|++|+++...+..|..+++|++|+|++|.++...+..|.++++|++|++++|. +....+..|.+++ |++|++++|.++
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 99999998878889999999999999999997777889999999999999954 4444455788999 999999999998
Q ss_pred ccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCc
Q 039925 191 GNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIA 270 (549)
Q Consensus 191 ~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~ 270 (549)
.+|. +. ..++|+.|++++|.+++..|..|..+ ++|+.|+|++|++++.. +
T Consensus 199 -~~~~-~~----------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~----~ 248 (440)
T 3zyj_A 199 -EIPN-LT----------------------PLIKLDELDLSGNHLSAIRPGSFQGL--MHLQKLWMIQSQIQVIE----R 248 (440)
T ss_dssp -SCCC-CT----------------------TCSSCCEEECTTSCCCEECTTTTTTC--TTCCEEECTTCCCCEEC----T
T ss_pred -cccc-cC----------------------CCcccCEEECCCCccCccChhhhccC--ccCCEEECCCCceeEEC----h
Confidence 5552 11 22479999999999999889999999 99999999999998655 5
Q ss_pred cccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccc
Q 039925 271 SSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 271 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 678999999999999999997777788999999999999999874
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=252.74 Aligned_cols=163 Identities=15% Similarity=0.132 Sum_probs=138.6
Q ss_pred cceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeec
Q 039925 35 GVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFIC 114 (549)
Q Consensus 35 gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls 114 (549)
-+.|.. .+++ .+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++| ++|+++
T Consensus 11 ~~~c~~--~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L-~~L~L~ 84 (570)
T 2z63_A 11 TYQCME--LNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL-STLILT 84 (570)
T ss_dssp EEECCS--SCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTC-CEEECT
T ss_pred EEEeCC--CCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhC-CEEeCc
Confidence 366754 2333 5666553 579999999999998778899999999999999999997777889999999 999999
Q ss_pred ccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCccee-cccccccccc-cceeeCCCCcCccc
Q 039925 115 ETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSG-LIPSFIFNIS-LKWNFLPENSFTGN 192 (549)
Q Consensus 115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~-L~~L~l~~n~l~~~ 192 (549)
+|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..|.+++ |++|++++|.+++.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred CCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 999998888999999999999999999996555579999999999999999987 4799999999 99999999999865
Q ss_pred CchhhhhcCCCC
Q 039925 193 LPLEIGVTLPKG 204 (549)
Q Consensus 193 ~p~~~~~~l~~L 204 (549)
.+..+. .+++|
T Consensus 165 ~~~~~~-~l~~L 175 (570)
T 2z63_A 165 YCTDLR-VLHQM 175 (570)
T ss_dssp CGGGGH-HHHTC
T ss_pred cHHHcc-chhcc
Confidence 555443 34333
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=233.56 Aligned_cols=271 Identities=20% Similarity=0.285 Sum_probs=192.6
Q ss_pred cccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCC
Q 039925 52 HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSA 131 (549)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~ 131 (549)
.+..+++|++|++++|.++ .++. |..+++|++|++++|.++. +| .+..+++| ++|++++|.+++..+ +..+++
T Consensus 61 ~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L-~~L~l~~n~i~~~~~--~~~l~~ 133 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNL-RELYLNEDNISDISP--LANLTK 133 (347)
T ss_dssp TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTC-SEEECTTSCCCCCGG--GTTCTT
T ss_pred hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcC-CEEECcCCcccCchh--hccCCc
Confidence 4777888888888888888 4444 8888888888888888873 44 57888888 888888888875433 778888
Q ss_pred CCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeec
Q 039925 132 IQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYIL 210 (549)
Q Consensus 132 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~ 210 (549)
|++|++++|.....+ ..+..+++|++|++++|.+.+..+ +..++ |++|++++|.+. .++. +. .+++|+.|+++
T Consensus 134 L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~~L~l~ 207 (347)
T 4fmz_A 134 MYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP-LA-SLTSLHYFTAY 207 (347)
T ss_dssp CCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG-GG-GCTTCCEEECC
T ss_pred eeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc-cc-CCCccceeecc
Confidence 888888888655333 347888888888888888774433 67777 888888888887 3443 43 78888888887
Q ss_pred c-cccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccc
Q 039925 211 L-LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKL 289 (549)
Q Consensus 211 ~-~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l 289 (549)
. .+.....+...++|+.|++++|.+++..+ +..+ ++|+.|++++|.+++ + ..+..+++|++|++++|++
T Consensus 208 ~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l--~~L~~L~l~~n~l~~-~-----~~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 208 VNQITDITPVANMTRLNSLKIGNNKITDLSP--LANL--SQLTWLEIGTNQISD-I-----NAVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp SSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTC--TTCCEEECCSSCCCC-C-----GGGTTCTTCCEEECCSSCC
T ss_pred cCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcC--CCCCEEECCCCccCC-C-----hhHhcCCCcCEEEccCCcc
Confidence 6 33444434555678888888888875443 6677 888888888887763 2 3467788888888888888
Q ss_pred cccCCccccCCCCCCEEEccCCcccccCCCC----------CCCCCCCcccCCcc-cccccceeeecCCC
Q 039925 290 QGNLPSSLGYYQNLMELSVSRNKLSASLPPL----------NSQHNHSFSCPGFE-FSVIKLEFQIPGNK 348 (549)
Q Consensus 290 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----------~ls~N~~~~ip~~~-~~~l~l~~~~~gn~ 348 (549)
++ + +.+..+++|+.|++++|++++..|.. ++++|++..+++.. +..+.. +++.+|+
T Consensus 278 ~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~-L~l~~N~ 344 (347)
T 4fmz_A 278 SD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDS-ADFANQV 344 (347)
T ss_dssp CC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSE-ESSSCC-
T ss_pred CC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccce-eehhhhc
Confidence 74 3 45777888888888888877544322 67777766665511 333332 5555654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-29 Score=246.55 Aligned_cols=246 Identities=15% Similarity=0.132 Sum_probs=161.6
Q ss_pred ccCCCCCCEEEccCCcceecCCccccCCCCCCEeeccccccc-ccCCcccc-------cccCccceeeeccccccccccc
Q 039925 53 VGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFS-GKIPANLS-------HCSNLLTKLFICETHLSGQLLD 124 (549)
Q Consensus 53 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~-------~l~~L~~~L~Ls~n~l~~~~~~ 124 (549)
++..++|+.|++++|.+ .+|..+... |++|+|++|.+. ..+|..+. .+++| ++|++++|.+++.+|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGL-QELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCC-CEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCc-cEEEccCCcccchhHH
Confidence 34455667777777777 566655543 677777777763 34555544 56677 7777777777766666
Q ss_pred cc--CCCCCCCEEEeecceeeeeCCccccCC-----CCCCEEecccCcceecccccccccc-cceeeCCCCcCccc--Cc
Q 039925 125 FI--GNPSAIQVMIFKENSLEGKFPNTLSNL-----RSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGN--LP 194 (549)
Q Consensus 125 ~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~--~p 194 (549)
.+ ..+++|++|+|++|++++. |..+..+ ++|++|++++|++.+..|..|..++ |++|++++|++.+. ++
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 54 6677777777777777644 6666555 6777777777777766666677776 77777777776544 22
Q ss_pred hhh-hhcCCCCcEeeecc-cccccc-----cccCcccccEEEccccccccccC-hhhhhccccCccEEEcCCCcccccCC
Q 039925 195 LEI-GVTLPKGRNYYILL-LAQKLY-----WSDVSTTATIIAMGGNQISGTIT-LGIKKLIFVNLYALTMVKNKLSGPIP 266 (549)
Q Consensus 195 ~~~-~~~l~~L~~L~l~~-~~~~l~-----~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~~~L~~L~L~~n~l~~~~p 266 (549)
..+ ...+++|++|++++ .+..+. .+...++|+.|++++|.+++..| ..+..+ ++|+.|+|++|.++ .+|
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l--~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP--SQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC--TTCCEEECTTSCCS-SCC
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc--CCCCEEECCCCccC-hhh
Confidence 232 12566666666655 222111 11123478888888888887664 345556 78888888888887 553
Q ss_pred CcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccc
Q 039925 267 HHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
..+. ++|++|+|++|++++. |. +..+++|+.|++++|++++
T Consensus 270 ----~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 270 ----KGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ----SSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ----hhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 3443 7888888888888854 65 7888888888888888875
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=240.67 Aligned_cols=251 Identities=16% Similarity=0.118 Sum_probs=206.9
Q ss_pred CCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEe
Q 039925 58 YLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIF 137 (549)
Q Consensus 58 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 137 (549)
....++.+++.++ .+|..+. ++|++|+|++|+|++..|..|..+++| ++|+|++|.+++..+..|.++++|++|+|
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L-~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHL-EVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCC-CEEECCCCccCCcChhhccCcccCCEEEC
Confidence 3467888888888 7887664 689999999999998778899999999 99999999999888899999999999999
Q ss_pred ecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeeccccccc
Q 039925 138 KENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKL 216 (549)
Q Consensus 138 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l 216 (549)
++|.++...+..|..+++|++|+|++|.+....+..|..++ |++|++++|...+.++...+..+
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l--------------- 195 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL--------------- 195 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC---------------
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC---------------
Confidence 99999976667799999999999999999977777889999 99999999655446665433233
Q ss_pred ccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCcc
Q 039925 217 YWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSS 296 (549)
Q Consensus 217 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 296 (549)
++|+.|++++|.+++. | .+..+ ++|+.|+|++|.+++.. |..|..+++|+.|+|++|++++..+..
T Consensus 196 ------~~L~~L~L~~n~l~~~-~-~~~~l--~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~ 261 (452)
T 3zyi_A 196 ------FNLKYLNLGMCNIKDM-P-NLTPL--VGLEELEMSGNHFPEIR----PGSFHGLSSLKKLWVMNSQVSLIERNA 261 (452)
T ss_dssp ------TTCCEEECTTSCCSSC-C-CCTTC--TTCCEEECTTSCCSEEC----GGGGTTCTTCCEEECTTSCCCEECTTT
T ss_pred ------CCCCEEECCCCccccc-c-ccccc--ccccEEECcCCcCcccC----cccccCccCCCEEEeCCCcCceECHHH
Confidence 3688889999999854 3 47777 99999999999998655 678999999999999999999888999
Q ss_pred ccCCCCCCEEEccCCcccccCCCCCCCCCCCcccCCcccccccceeeecCCCCCCCC
Q 039925 297 LGYYQNLMELSVSRNKLSASLPPLNSQHNHSFSCPGFEFSVIKLEFQIPGNKKLCGG 353 (549)
Q Consensus 297 l~~l~~L~~L~Ls~N~l~~~~p~~~ls~N~~~~ip~~~~~~l~l~~~~~gn~~~c~~ 353 (549)
|..+++|+.|+|++|++++..+.. +.. +..+.. +.+.+||+.|..
T Consensus 262 ~~~l~~L~~L~L~~N~l~~~~~~~-~~~----------l~~L~~-L~L~~Np~~CdC 306 (452)
T 3zyi_A 262 FDGLASLVELNLAHNNLSSLPHDL-FTP----------LRYLVE-LHLHHNPWNCDC 306 (452)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTS-STT----------CTTCCE-EECCSSCEECST
T ss_pred hcCCCCCCEEECCCCcCCccChHH-hcc----------ccCCCE-EEccCCCcCCCC
Confidence 999999999999999998533221 110 122222 778899998864
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=230.01 Aligned_cols=234 Identities=18% Similarity=0.225 Sum_probs=190.3
Q ss_pred eEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeeccccccccccc
Q 039925 45 INKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLD 124 (549)
Q Consensus 45 v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~ 124 (549)
+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++ .+|..+. ++| ++|++++|.+++..+.
T Consensus 64 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L-~~L~l~~n~l~~~~~~ 139 (330)
T 1xku_A 64 ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTL-QELRVHENEITKVRKS 139 (330)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTC-CEEECCSSCCCBBCHH
T ss_pred CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccc-cEEECCCCcccccCHh
Confidence 33333458999999999999999999777999999999999999999999 7887665 788 9999999999988888
Q ss_pred ccCCCCCCCEEEeecceeee--eCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcC
Q 039925 125 FIGNPSAIQVMIFKENSLEG--KFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTL 201 (549)
Q Consensus 125 ~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l 201 (549)
.|.++++|++|++++|.+.. ..+..+..+++|++|++++|.+.. +|..+. + |++|++++|.+++..|..+. .+
T Consensus 140 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l 215 (330)
T 1xku_A 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLK-GL 215 (330)
T ss_dssp HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGT-TC
T ss_pred HhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhc-CC
Confidence 89999999999999999964 678889999999999999999984 555443 5 99999999999966666655 44
Q ss_pred CCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCe
Q 039925 202 PKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTY 281 (549)
Q Consensus 202 ~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~ 281 (549)
+ +|+.|++++|.+++..+..+..+ ++|+.|++++|.++ .+ |..+..+++|++
T Consensus 216 ~---------------------~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~N~l~-~l----p~~l~~l~~L~~ 267 (330)
T 1xku_A 216 N---------------------NLAKLGLSFNSISAVDNGSLANT--PHLRELHLNNNKLV-KV----PGGLADHKYIQV 267 (330)
T ss_dssp T---------------------TCCEEECCSSCCCEECTTTGGGS--TTCCEEECCSSCCS-SC----CTTTTTCSSCCE
T ss_pred C---------------------CCCEEECCCCcCceeChhhccCC--CCCCEEECCCCcCc-cC----ChhhccCCCcCE
Confidence 3 57777777888877666677777 78888888888877 33 566777888888
Q ss_pred eeccCccccccCCccccC------CCCCCEEEccCCccc
Q 039925 282 LALDNNKLQGNLPSSLGY------YQNLMELSVSRNKLS 314 (549)
Q Consensus 282 L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~ 314 (549)
|++++|++++..+..|.. .+.|+.|++++|.+.
T Consensus 268 L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp EECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred EECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 888888887555555533 367778888888775
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=230.54 Aligned_cols=257 Identities=23% Similarity=0.291 Sum_probs=213.6
Q ss_pred ecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccC
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIG 127 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~ 127 (549)
.+|. +.++++|++|++++|.++ .++ .|..+++|++|++++|.++ .++. +..+++| ++|++++|.....++. +.
T Consensus 80 ~~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~L~~L~l~~n~i~-~~~~-~~~l~~L-~~L~l~~n~~~~~~~~-~~ 152 (347)
T 4fmz_A 80 DISP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNEDNIS-DISP-LANLTKM-YSLNLGANHNLSDLSP-LS 152 (347)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECTTSCCC-CCGG-GTTCTTC-CEEECTTCTTCCCCGG-GT
T ss_pred cchh-hhcCCcCCEEEccCCccc-Cch-HHcCCCcCCEEECcCCccc-Cchh-hccCCce-eEEECCCCCCcccccc-hh
Confidence 4555 899999999999999998 454 6999999999999999999 4555 8899999 9999999976655444 89
Q ss_pred CCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcE
Q 039925 128 NPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRN 206 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~ 206 (549)
.+++|++|++++|.+.+. +. +..+++|++|++++|.+.+..+ +..++ |+.|++++|.+++..+ +. .+++|+.
T Consensus 153 ~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~ 225 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VA-NMTRLNS 225 (347)
T ss_dssp TCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GG-GCTTCCE
T ss_pred hCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hh-cCCcCCE
Confidence 999999999999999844 33 8899999999999999985433 77888 9999999999984433 44 8999999
Q ss_pred eeecc-cccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeecc
Q 039925 207 YYILL-LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALD 285 (549)
Q Consensus 207 L~l~~-~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls 285 (549)
|++++ .+..+..+...++|+.|++++|.+++. ..+..+ ++|+.|++++|.+++ + ..+..+++|++|+++
T Consensus 226 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l--~~L~~L~l~~n~l~~-~-----~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 226 LKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDL--TKLKMLNVGSNQISD-I-----SVLNNLSQLNSLFLN 295 (347)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTC--TTCCEEECCSSCCCC-C-----GGGGGCTTCSEEECC
T ss_pred EEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcC--CCcCEEEccCCccCC-C-----hhhcCCCCCCEEECc
Confidence 99988 455555566677999999999999864 467888 999999999999884 2 357889999999999
Q ss_pred CccccccCCccccCCCCCCEEEccCCcccccCCCC--------CCCCCCCc
Q 039925 286 NNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL--------NSQHNHSF 328 (549)
Q Consensus 286 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--------~ls~N~~~ 328 (549)
+|++++..|..+..+++|+.|++++|++++..|-. ++++|++.
T Consensus 296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred CCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 99999888888999999999999999999866522 77777643
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-27 Score=232.08 Aligned_cols=222 Identities=18% Similarity=0.169 Sum_probs=196.0
Q ss_pred CCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCE
Q 039925 79 RLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFY 158 (549)
Q Consensus 79 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 158 (549)
..++++.|+|++|.++ .+|..++.+++| ++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHL-QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTC-SEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCC-CEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 3578999999999999 899999999999 99999999999 88999999999999999999999 88999999999999
Q ss_pred EecccCcceecccccccc---------cc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEE
Q 039925 159 DNINRNEFSGLIPSFIFN---------IS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATII 228 (549)
Q Consensus 159 L~L~~n~l~~~~p~~~~~---------l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L 228 (549)
|++++|.+.+.+|..+.. ++ |++|++++|.++ .+|..+. .++ +|+.|
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~---------------------~L~~L 211 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQ---------------------NLKSL 211 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCT---------------------TCCEE
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhc-CCC---------------------CCCEE
Confidence 999999998888887654 88 999999999998 8887765 333 68888
Q ss_pred EccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEc
Q 039925 229 AMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSV 308 (549)
Q Consensus 229 ~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 308 (549)
++++|.+++ +|..+..+ ++|+.|++++|.+.+.+ |..+..+++|++|+|++|.+.+.+|..+..+++|+.|+|
T Consensus 212 ~L~~N~l~~-l~~~l~~l--~~L~~L~Ls~n~~~~~~----p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 212 KIRNSPLSA-LGPAIHHL--PKLEELDLRGCTALRNY----PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp EEESSCCCC-CCGGGGGC--TTCCEEECTTCTTCCBC----CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred EccCCCCCc-CchhhccC--CCCCEEECcCCcchhhh----HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 999999995 66678999 99999999999998877 578899999999999999999999999999999999999
Q ss_pred cCCcccccCCCC--CCCCCCCcccCCcc
Q 039925 309 SRNKLSASLPPL--NSQHNHSFSCPGFE 334 (549)
Q Consensus 309 s~N~l~~~~p~~--~ls~N~~~~ip~~~ 334 (549)
++|++.+.+|.. .+..+..-.+|...
T Consensus 285 ~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCCCchhhccHHHhhccCceEEeCCHHH
Confidence 999999988875 45554444444433
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=248.30 Aligned_cols=300 Identities=19% Similarity=0.148 Sum_probs=229.1
Q ss_pred ec-CccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeeccccccccccccc
Q 039925 48 CL-TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFI 126 (549)
Q Consensus 48 ~l-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~ 126 (549)
.+ |.+|.++++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++| ++|+|++|++++..+..|
T Consensus 66 ~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L-~~L~Ls~N~l~~l~~~~~ 144 (635)
T 4g8a_A 66 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL-QKLVAVETNLASLENFPI 144 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC-CEEECTTSCCCCSTTCCC
T ss_pred CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC-CEEECCCCcCCCCChhhh
Confidence 45 4589999999999999999997777889999999999999999996556678999999 999999999998888889
Q ss_pred CCCCCCCEEEeecceeee-eCCccccCCCCCCEEecccCcceecccccccccc-----cceeeCCCCcCcccCc------
Q 039925 127 GNPSAIQVMIFKENSLEG-KFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-----LKWNFLPENSFTGNLP------ 194 (549)
Q Consensus 127 ~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-----L~~L~l~~n~l~~~~p------ 194 (549)
+++++|++|+|++|.++. ..|..+..+++|++|++++|++.+..+..+..+. ...++++.|.+....+
T Consensus 145 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~ 224 (635)
T 4g8a_A 145 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 224 (635)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC
T ss_pred hcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccch
Confidence 999999999999999975 4678889999999999999988766555443221 1122222222110000
Q ss_pred -----------------h--------------------------------------------------------------
Q 039925 195 -----------------L-------------------------------------------------------------- 195 (549)
Q Consensus 195 -----------------~-------------------------------------------------------------- 195 (549)
.
T Consensus 225 ~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 304 (635)
T 4g8a_A 225 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNC 304 (635)
T ss_dssp EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGG
T ss_pred hhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhh
Confidence 0
Q ss_pred ------------------hhh------------------------------------------hcCCCCcEeeecc----
Q 039925 196 ------------------EIG------------------------------------------VTLPKGRNYYILL---- 211 (549)
Q Consensus 196 ------------------~~~------------------------------------------~~l~~L~~L~l~~---- 211 (549)
.+. ..+++|+.|+++.
T Consensus 305 ~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 384 (635)
T 4g8a_A 305 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 384 (635)
T ss_dssp GTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCB
T ss_pred hcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccc
Confidence 000 0123344443332
Q ss_pred ---------------------------------cccccc----------------cccCcccccEEEccccccccccChh
Q 039925 212 ---------------------------------LAQKLY----------------WSDVSTTATIIAMGGNQISGTITLG 242 (549)
Q Consensus 212 ---------------------------------~~~~l~----------------~l~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
.+..+. .+....+++.++++.|.+.+..+..
T Consensus 385 ~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~ 464 (635)
T 4g8a_A 385 FKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 464 (635)
T ss_dssp EEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred cccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccc
Confidence 111221 1223458899999999999888888
Q ss_pred hhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC--
Q 039925 243 IKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL-- 320 (549)
Q Consensus 243 ~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-- 320 (549)
+..+ +.|+.|++++|.+...++ |..+..+++|++|+|++|++++..|..|.++++|+.|+|++|+|++..|..
T Consensus 465 ~~~~--~~L~~L~Ls~N~~~~~~~---~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~ 539 (635)
T 4g8a_A 465 FNGL--SSLEVLKMAGNSFQENFL---PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 539 (635)
T ss_dssp TTTC--TTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGT
T ss_pred cccc--hhhhhhhhhhcccccccC---chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHh
Confidence 8888 999999999998654432 677899999999999999999888999999999999999999999765543
Q ss_pred --------CCCCCCCcccCCcccccc--cce-eeecCCCCCCCC
Q 039925 321 --------NSQHNHSFSCPGFEFSVI--KLE-FQIPGNKKLCGG 353 (549)
Q Consensus 321 --------~ls~N~~~~ip~~~~~~l--~l~-~~~~gn~~~c~~ 353 (549)
++++|++..+++..+..+ .++ +++.+||+.|..
T Consensus 540 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 540 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 899999988887765433 232 789999999964
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=229.19 Aligned_cols=233 Identities=22% Similarity=0.246 Sum_probs=171.4
Q ss_pred eEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeeccccccccccc
Q 039925 45 INKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLD 124 (549)
Q Consensus 45 v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~ 124 (549)
+.+..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++ .+|..+. ++| ++|++++|.++...+.
T Consensus 66 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L-~~L~l~~n~i~~~~~~ 141 (332)
T 2ft3_A 66 ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSL-VELRIHDNRIRKVPKG 141 (332)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTC-CEEECCSSCCCCCCSG
T ss_pred CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccC-CEEECCCCccCccCHh
Confidence 44444668999999999999999999888999999999999999999999 7887765 788 9999999999987778
Q ss_pred ccCCCCCCCEEEeecceeee--eCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcC
Q 039925 125 FIGNPSAIQVMIFKENSLEG--KFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTL 201 (549)
Q Consensus 125 ~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l 201 (549)
.|.++++|++|++++|.++. ..+..+..+ +|++|++++|++++ +|..+. + |++|++++|.+++..+..+. .+
T Consensus 142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~-~l 216 (332)
T 2ft3_A 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLL-RY 216 (332)
T ss_dssp GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSST-TC
T ss_pred HhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhc-CC
Confidence 89999999999999999963 677888888 99999999999985 555443 5 99999999999965555555 55
Q ss_pred CCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCe
Q 039925 202 PKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTY 281 (549)
Q Consensus 202 ~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~ 281 (549)
++ |+.|++++|.+.+..+..+..+ ++|+.|++++|+++ .+ |..+..+++|++
T Consensus 217 ~~---------------------L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~-~l----p~~l~~l~~L~~ 268 (332)
T 2ft3_A 217 SK---------------------LYRLGLGHNQIRMIENGSLSFL--PTLRELHLDNNKLS-RV----PAGLPDLKLLQV 268 (332)
T ss_dssp TT---------------------CSCCBCCSSCCCCCCTTGGGGC--TTCCEEECCSSCCC-BC----CTTGGGCTTCCE
T ss_pred CC---------------------CCEEECCCCcCCcCChhHhhCC--CCCCEEECCCCcCe-ec----ChhhhcCccCCE
Confidence 55 4455555555555444455555 55555555555555 22 344555555555
Q ss_pred eeccCccccccCCccccC------CCCCCEEEccCCccc
Q 039925 282 LALDNNKLQGNLPSSLGY------YQNLMELSVSRNKLS 314 (549)
Q Consensus 282 L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~ 314 (549)
|++++|++++..+..|.. .+.|+.|++++|.++
T Consensus 269 L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp EECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred EECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 555555555433333332 244555555555554
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-26 Score=236.20 Aligned_cols=256 Identities=23% Similarity=0.288 Sum_probs=155.7
Q ss_pred cCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCC
Q 039925 49 LTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGN 128 (549)
Q Consensus 49 lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~ 128 (549)
+| .+..+++|++|+|++|.+++ +|. +.++++|++|++++|.+++ ++. +..+++| ++|++++|.+++..+ +.+
T Consensus 61 l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L-~~L~L~~n~l~~~~~--~~~ 132 (466)
T 1o6v_A 61 ID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIAD-ITP-LANLTNL-TGLTLFNNQITDIDP--LKN 132 (466)
T ss_dssp CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTC-CEEECCSSCCCCCGG--GTT
T ss_pred Cc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCcccc-Chh-hcCCCCC-CEEECCCCCCCCChH--HcC
Confidence 44 36677778888888887773 343 7777778888888777774 333 7777777 777887777775433 777
Q ss_pred CCCCCEEEeecceeeeeCCc--------------------cccCCCCCCEEecccCcceecccccccccc-cceeeCCCC
Q 039925 129 PSAIQVMIFKENSLEGKFPN--------------------TLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPEN 187 (549)
Q Consensus 129 l~~L~~L~L~~n~l~~~~p~--------------------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n 187 (549)
+++|++|++++|.+.+ ++. .+.++++|++|++++|.+.+. ..+..++ |++|++++|
T Consensus 133 l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 133 LTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 209 (466)
T ss_dssp CTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred CCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCC
Confidence 7777777777777763 221 245556666666666666532 2355555 666666666
Q ss_pred cCcccCchhhhhcCCCCcEeeecc-cccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCC
Q 039925 188 SFTGNLPLEIGVTLPKGRNYYILL-LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIP 266 (549)
Q Consensus 188 ~l~~~~p~~~~~~l~~L~~L~l~~-~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p 266 (549)
.+++..| +. .+++|+.|++++ .+..+..+...++|+.|++++|.+.+..+ +..+ ++|+.|++++|.+++.
T Consensus 210 ~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l--~~L~~L~l~~n~l~~~-- 280 (466)
T 1o6v_A 210 QISDITP--LG-ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGL--TKLTELKLGANQISNI-- 280 (466)
T ss_dssp CCCCCGG--GG-GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTC--TTCSEEECCSSCCCCC--
T ss_pred ccccccc--cc-ccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcC--CCCCEEECCCCccCcc--
Confidence 6664333 33 566666666665 33333344444566666666666665433 5555 6666666666666532
Q ss_pred CcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC--------CCCCCCCccc
Q 039925 267 HHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL--------NSQHNHSFSC 330 (549)
Q Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--------~ls~N~~~~i 330 (549)
+. +..+++|+.|++++|++.+..+ +..+++|+.|++++|++++..|-. ++++|++..+
T Consensus 281 ---~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 281 ---SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp ---GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred ---cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc
Confidence 12 5556666666666666663222 556666666666666666543311 5555555444
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-26 Score=235.18 Aligned_cols=250 Identities=17% Similarity=0.157 Sum_probs=208.0
Q ss_pred CCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEee
Q 039925 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFK 138 (549)
Q Consensus 59 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 138 (549)
.+.++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++| ++|+|++|.++...+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L-~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHL-EILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSC-CEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCC-CEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456788888888 7887665 789999999999997777899999999 999999999998888999999999999999
Q ss_pred cceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccc
Q 039925 139 ENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLY 217 (549)
Q Consensus 139 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~ 217 (549)
+|+++...+..|..+++|++|+|++|.+....+..|..++ |++|++++|...+.++...+..+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l---------------- 184 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL---------------- 184 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC----------------
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc----------------
Confidence 9999966666899999999999999999987778899999 99999999665546665433233
Q ss_pred cccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccc
Q 039925 218 WSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSL 297 (549)
Q Consensus 218 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l 297 (549)
++|+.|++++|.++. +| .+..+ ++|+.|+|++|.+++.. |..|..+++|+.|+|++|++++..+..|
T Consensus 185 -----~~L~~L~L~~n~l~~-~~-~~~~l--~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 185 -----SNLRYLNLAMCNLRE-IP-NLTPL--IKLDELDLSGNHLSAIR----PGSFQGLMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp -----SSCCEEECTTSCCSS-CC-CCTTC--SSCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTCCCCEECTTSS
T ss_pred -----cccCeecCCCCcCcc-cc-ccCCC--cccCEEECCCCccCccC----hhhhccCccCCEEECCCCceeEEChhhh
Confidence 368888899999884 44 47777 99999999999998655 5788999999999999999998888999
Q ss_pred cCCCCCCEEEccCCcccccCCCCCCCCCCCcccCCcccccccceeeecCCCCCCCC
Q 039925 298 GYYQNLMELSVSRNKLSASLPPLNSQHNHSFSCPGFEFSVIKLEFQIPGNKKLCGG 353 (549)
Q Consensus 298 ~~l~~L~~L~Ls~N~l~~~~p~~~ls~N~~~~ip~~~~~~l~l~~~~~gn~~~c~~ 353 (549)
..+++|+.|+|++|++++..+.. +.. +..+.. +.+.+||+.|..
T Consensus 252 ~~l~~L~~L~L~~N~l~~~~~~~-~~~----------l~~L~~-L~L~~Np~~CdC 295 (440)
T 3zyj_A 252 DNLQSLVEINLAHNNLTLLPHDL-FTP----------LHHLER-IHLHHNPWNCNC 295 (440)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTT-TSS----------CTTCCE-EECCSSCEECSS
T ss_pred cCCCCCCEEECCCCCCCccChhH-hcc----------ccCCCE-EEcCCCCccCCC
Confidence 99999999999999999533221 110 122222 788999999864
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-27 Score=227.31 Aligned_cols=213 Identities=17% Similarity=0.134 Sum_probs=127.8
Q ss_pred ecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccc-ccccccccc
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETH-LSGQLLDFI 126 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~-l~~~~~~~~ 126 (549)
.+|..+ .++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++| ++|++++|. +....|..|
T Consensus 25 ~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 25 AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL-EQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSCTTCCCCCTTTT
T ss_pred cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCC-CEEeCCCCCCccccCHHHh
Confidence 344433 3567777777777775555666777777777777777765556666667777 777777775 555556666
Q ss_pred CCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCc
Q 039925 127 GNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGR 205 (549)
Q Consensus 127 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~ 205 (549)
..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..++ |++|++++|.++
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------- 166 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--------------- 166 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc---------------
Confidence 6667777777777776655566666666666666666666644444455555 555555555554
Q ss_pred EeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeecc
Q 039925 206 NYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALD 285 (549)
Q Consensus 206 ~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls 285 (549)
+..+..+..+ ++|+.|++++|.+++.. |..+..+++|++|+++
T Consensus 167 -------------------------------~~~~~~~~~l--~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 167 -------------------------------SVPERAFRGL--HSLDRLLLHQNRVAHVH----PHAFRDLGRLMTLYLF 209 (285)
T ss_dssp -------------------------------EECTTTTTTC--TTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECC
T ss_pred -------------------------------ccCHHHhcCc--cccCEEECCCCcccccC----HhHccCcccccEeeCC
Confidence 3333334444 55555555555555433 3445555556666666
Q ss_pred CccccccCCccccCCCCCCEEEccCCcccc
Q 039925 286 NNKLQGNLPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 286 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
+|++++..+..+..+++|+.|++++|+++.
T Consensus 210 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 210 ANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp SSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 665554333445555666666666665553
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=222.28 Aligned_cols=227 Identities=19% Similarity=0.232 Sum_probs=158.2
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeec
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKE 139 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (549)
++++.+++.++ .+|..+ .++|++|+|++|.+++..+..|..+++| ++|++++|.+++..|..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNL-TILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCC-CEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 46777777777 566543 3577788888877775555567777777 7777777777766666777777777777777
Q ss_pred ce-eeeeCCccccCCCCCCEEecccCcceecccccccccccceeeCCCCcCcccCchhhhhcCCCCcEeeeccccccccc
Q 039925 140 NS-LEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYW 218 (549)
Q Consensus 140 n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~ 218 (549)
|. +....|..|..+++|++|++++|.+.+..|..+..++
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------------------- 129 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA---------------------------------------- 129 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT----------------------------------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc----------------------------------------
Confidence 75 6544466666677777777777766654444444444
Q ss_pred ccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCcccc
Q 039925 219 SDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLG 298 (549)
Q Consensus 219 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 298 (549)
+|++|++++|.+++..+..+..+ ++|+.|++++|++++.. +..+..+++|++|++++|.+++..|..+.
T Consensus 130 -----~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 198 (285)
T 1ozn_A 130 -----ALQYLYLQDNALQALPDDTFRDL--GNLTHLFLHGNRISSVP----ERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198 (285)
T ss_dssp -----TCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred -----CCCEEECCCCcccccCHhHhccC--CCccEEECCCCcccccC----HHHhcCccccCEEECCCCcccccCHhHcc
Confidence 34445555555554444556677 89999999999998433 45688999999999999999988899999
Q ss_pred CCCCCCEEEccCCcccccCCCCCCCCCCCcccCCcccccccceeeecCCCCCCCC
Q 039925 299 YYQNLMELSVSRNKLSASLPPLNSQHNHSFSCPGFEFSVIKLEFQIPGNKKLCGG 353 (549)
Q Consensus 299 ~l~~L~~L~Ls~N~l~~~~p~~~ls~N~~~~ip~~~~~~l~l~~~~~gn~~~c~~ 353 (549)
.+++|+.|++++|++++..+.. +.. +..+.. +.+.+|++.|..
T Consensus 199 ~l~~L~~L~l~~n~l~~~~~~~-~~~----------l~~L~~-L~l~~N~~~c~~ 241 (285)
T 1ozn_A 199 DLGRLMTLYLFANNLSALPTEA-LAP----------LRALQY-LRLNDNPWVCDC 241 (285)
T ss_dssp TCTTCCEEECCSSCCSCCCHHH-HTT----------CTTCCE-EECCSSCEECSG
T ss_pred CcccccEeeCCCCcCCcCCHHH-ccc----------CcccCE-EeccCCCccCCC
Confidence 9999999999999998633211 000 122222 667788877754
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-26 Score=223.53 Aligned_cols=248 Identities=15% Similarity=0.168 Sum_probs=204.5
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCCc-ccccccCccceeeecccccccc--cccccCCCCCCCEEE
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPA-NLSHCSNLLTKLFICETHLSGQ--LLDFIGNPSAIQVMI 136 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~ 136 (549)
+.++.+++.++ .+|..+. ++|++|+|++|+++ .+|. .|..+++| ++|++++|.++.. .+..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQL-TKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTC-SEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccC-CEEECCCCccCcccCcccccccccccCEEE
Confidence 46888899888 7887554 68999999999999 5665 47899999 9999999999843 366777899999999
Q ss_pred eecceeeeeCCccccCCCCCCEEecccCcceeccc-ccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeeccccc
Q 039925 137 FKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIP-SFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQ 214 (549)
Q Consensus 137 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~ 214 (549)
+++|.++ .+|..+..+++|++|++++|.+.+..+ ..+..++ |++|++++|.+.+..+..+. .+
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l------------- 149 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GL------------- 149 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TC-------------
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cC-------------
Confidence 9999999 678889999999999999999986655 5788888 99999999999866665544 23
Q ss_pred ccccccCcccccEEEcccccccc-ccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccC
Q 039925 215 KLYWSDVSTTATIIAMGGNQISG-TITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNL 293 (549)
Q Consensus 215 ~l~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~ 293 (549)
++|+.|++++|.+.+ ..|..+..+ ++|+.|++++|.+++.. |..+..+++|++|+|++|++++..
T Consensus 150 --------~~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 150 --------SSLEVLKMAGNSFQENFLPDIFTEL--RNLTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp --------TTCCEEECTTCEEGGGEECSCCTTC--TTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTSCCSBCC
T ss_pred --------cCCCEEECCCCccccccchhHHhhC--cCCCEEECCCCCcCCcC----HHHhcCCCCCCEEECCCCccCccC
Confidence 378889999999987 678889999 99999999999998654 567889999999999999999777
Q ss_pred CccccCCCCCCEEEccCCcccccCCCCCCCCCCCcccCCcccccccceeeecCCCCCCC
Q 039925 294 PSSLGYYQNLMELSVSRNKLSASLPPLNSQHNHSFSCPGFEFSVIKLEFQIPGNKKLCG 352 (549)
Q Consensus 294 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ls~N~~~~ip~~~~~~l~l~~~~~gn~~~c~ 352 (549)
+..+..+++|+.|++++|++++..|.. +..+|+ .+.. +++.+|++.|.
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~~~~----~L~~-L~L~~N~~~~~ 263 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQE------LQHFPS----SLAF-LNLTQNDFACT 263 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSS------CCCCCT----TCCE-EECTTCCEECS
T ss_pred hhhccCcccCCEeECCCCCCcccCHHH------HHhhhc----cCCE-EEccCCCeecc
Confidence 778999999999999999999866543 111221 1221 67788888775
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-27 Score=235.94 Aligned_cols=221 Identities=17% Similarity=0.113 Sum_probs=161.7
Q ss_pred cccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCC
Q 039925 52 HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSA 131 (549)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~ 131 (549)
.+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++| ++|++++|.+++.. ..++
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L-~~L~Ls~n~l~~l~-----~~~~ 100 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTL-RTLDLNNNYVQELL-----VGPS 100 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTC-CEEECCSSEEEEEE-----ECTT
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCC-CEEECcCCcccccc-----CCCC
Confidence 44567789999999999997777889999999999999999985444 8899999 99999999988543 3489
Q ss_pred CCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeec
Q 039925 132 IQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYIL 210 (549)
Q Consensus 132 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~ 210 (549)
|++|++++|.+++..+. .+++|++|++++|++++..+..+..++ |++|++++|.+++..+..+...+++
T Consensus 101 L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~------- 170 (317)
T 3o53_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT------- 170 (317)
T ss_dssp CCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT-------
T ss_pred cCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc-------
Confidence 99999999999865543 367899999999999988788888888 9999999999996666666534554
Q ss_pred ccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCcccc
Q 039925 211 LLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQ 290 (549)
Q Consensus 211 ~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (549)
|++|++++|.+++..+ ...+ ++|+.|++++|++++ + |..+..+++|++|+|++|+++
T Consensus 171 --------------L~~L~L~~N~l~~~~~--~~~l--~~L~~L~Ls~N~l~~-l----~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 171 --------------LEHLNLQYNFIYDVKG--QVVF--AKLKTLDLSSNKLAF-M----GPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp --------------CCEEECTTSCCCEEEC--CCCC--TTCCEEECCSSCCCE-E----CGGGGGGTTCSEEECTTSCCC
T ss_pred --------------CCEEECCCCcCccccc--cccc--ccCCEEECCCCcCCc-c----hhhhcccCcccEEECcCCccc
Confidence 5555555665554311 1124 566666666666652 2 233556666666666666666
Q ss_pred ccCCccccCCCCCCEEEccCCccc
Q 039925 291 GNLPSSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 291 ~~~p~~l~~l~~L~~L~Ls~N~l~ 314 (549)
.+|..+..+++|+.|++++|+++
T Consensus 228 -~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 228 -LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp -EECTTCCCCTTCCEEECTTCCCB
T ss_pred -chhhHhhcCCCCCEEEccCCCcc
Confidence 45555666666666666666665
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=232.92 Aligned_cols=277 Identities=22% Similarity=0.235 Sum_probs=214.5
Q ss_pred ecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccc----
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLL---- 123 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~---- 123 (549)
.+|+ +.++++|++|++++|.+++. +. +.++++|++|++++|.+++ ++. +..+++| ++|++++|.+.+...
T Consensus 82 ~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L-~~L~l~~n~l~~~~~~~~l 155 (466)
T 1o6v_A 82 DITP-LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQITD-IDP-LKNLTNL-NRLELSSNTISDISALSGL 155 (466)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTC-SEEEEEEEEECCCGGGTTC
T ss_pred Cchh-hhccccCCEEECCCCccccC-hh-hcCCCCCCEEECCCCCCCC-ChH-HcCCCCC-CEEECCCCccCCChhhccC
Confidence 4454 88999999999999999844 43 8899999999999999884 444 8888998 999999988775321
Q ss_pred ---------------cccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCC
Q 039925 124 ---------------DFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPEN 187 (549)
Q Consensus 124 ---------------~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n 187 (549)
..+.++++|++|++++|.++. + ..+..+++|++|++++|.+.+..| +..++ |++|++++|
T Consensus 156 ~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 156 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 231 (466)
T ss_dssp TTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred CcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCC
Confidence 136678889999999999874 3 358899999999999999987655 67778 999999999
Q ss_pred cCcccCchhhhhcCCCCcEeeecc-cccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCC
Q 039925 188 SFTGNLPLEIGVTLPKGRNYYILL-LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIP 266 (549)
Q Consensus 188 ~l~~~~p~~~~~~l~~L~~L~l~~-~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p 266 (549)
.+++ ++ .+. .+++|+.|++++ .+..+..+...++|+.|++++|.+.+..+ +..+ ++|+.|++++|++++..
T Consensus 232 ~l~~-~~-~l~-~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l--~~L~~L~L~~n~l~~~~- 303 (466)
T 1o6v_A 232 QLKD-IG-TLA-SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGL--TALTNLELNENQLEDIS- 303 (466)
T ss_dssp CCCC-CG-GGG-GCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTC--TTCSEEECCSSCCSCCG-
T ss_pred Cccc-ch-hhh-cCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCC--CccCeEEcCCCcccCch-
Confidence 9984 43 444 899999999988 44455445666789999999999986544 7778 89999999999988532
Q ss_pred CcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC---------CCCCCCCcccCCcc-cc
Q 039925 267 HHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL---------NSQHNHSFSCPGFE-FS 336 (549)
Q Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---------~ls~N~~~~ip~~~-~~ 336 (549)
. +..+++|+.|++++|++++..| +..+++|+.|++++|++++. +.. ++++|++..+++.. +.
T Consensus 304 ----~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~ 375 (466)
T 1o6v_A 304 ----P-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTPLANLT 375 (466)
T ss_dssp ----G-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGGGTTCT
T ss_pred ----h-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccchhhcCC
Confidence 2 7788999999999999986554 78899999999999998864 221 78888876665522 44
Q ss_pred cccceeeecCCCCCC
Q 039925 337 VIKLEFQIPGNKKLC 351 (549)
Q Consensus 337 ~l~l~~~~~gn~~~c 351 (549)
.+.. +.+.+|++..
T Consensus 376 ~L~~-L~l~~n~~~~ 389 (466)
T 1o6v_A 376 RITQ-LGLNDQAWTN 389 (466)
T ss_dssp TCCE-EECCCEEEEC
T ss_pred CCCE-EeccCCcccC
Confidence 4432 5666776554
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=232.48 Aligned_cols=236 Identities=17% Similarity=0.105 Sum_probs=122.8
Q ss_pred cccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCC
Q 039925 52 HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSA 131 (549)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~ 131 (549)
.|..+++|++|+|++|.+++ +| ++.+++|++|++++|.+++ +| +..+++| ++|++++|++++. + ++.+++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L-~~L~L~~N~l~~l-~--~~~l~~ 128 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKL-TYLNCDTNKLTKL-D--VSQNPL 128 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTC-CEEECCSSCCSCC-C--CTTCTT
T ss_pred hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcC-CEEECCCCcCCee-c--CCCCCc
Confidence 45555556666666555553 33 5555556666666655553 22 5555555 5666666555542 2 555555
Q ss_pred CCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeec
Q 039925 132 IQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYIL 210 (549)
Q Consensus 132 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~ 210 (549)
|++|++++|.+++ ++ ++.+++|++|++++|...+.+ .+..++ |++|++++|++++ +| +. .+++|+.|+++
T Consensus 129 L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~-~l~~L~~L~l~ 199 (457)
T 3bz5_A 129 LTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VS-QNKLLNRLNCD 199 (457)
T ss_dssp CCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CT-TCTTCCEEECC
T ss_pred CCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cc-cCCCCCEEECc
Confidence 6666666665553 22 555555666666555433333 244555 6666666666553 33 32 55566666655
Q ss_pred c-cccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCcc-------ccCee
Q 039925 211 L-LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLT-------LLTYL 282 (549)
Q Consensus 211 ~-~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~-------~L~~L 282 (549)
. .+..+. +...++|+.|++++|++++ +| +..+ ++|+.|++++|++++.. +..+..+. +|+.|
T Consensus 200 ~N~l~~~~-l~~l~~L~~L~Ls~N~l~~-ip--~~~l--~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~n~L~~L 269 (457)
T 3bz5_A 200 TNNITKLD-LNQNIQLTFLDCSSNKLTE-ID--VTPL--TQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTDLLEI 269 (457)
T ss_dssp SSCCSCCC-CTTCTTCSEEECCSSCCSC-CC--CTTC--TTCSEEECCSSCCSCCC----CTTCTTCCEEECTTCCCSCC
T ss_pred CCcCCeec-cccCCCCCEEECcCCcccc-cC--cccc--CCCCEEEeeCCcCCCcC----HHHCCCCCEEeccCCCCCEE
Confidence 4 233322 2333456666666666654 33 4455 56666666666665422 12222222 34445
Q ss_pred eccCccccccCCccccCCCCCCEEEccCCcccccCC
Q 039925 283 ALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLP 318 (549)
Q Consensus 283 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 318 (549)
++++|.+.+.+| +..+++|+.|++++|...+.+|
T Consensus 270 ~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 270 DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred ECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 555554444443 3455666666666666555444
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=216.18 Aligned_cols=217 Identities=19% Similarity=0.257 Sum_probs=159.5
Q ss_pred CCCCCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCc
Q 039925 28 IDLCQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL 107 (549)
Q Consensus 28 ~~~c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 107 (549)
.++|.|.|+.|+.. ..++.++++++.++ .+|..+. ++|++|+|++|++++..+..|..+++|
T Consensus 2 ~~~C~~~~~~C~c~---------------~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L 63 (270)
T 2o6q_A 2 EALCKKDGGVCSCN---------------NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKL 63 (270)
T ss_dssp CCCBGGGTCSBEEE---------------TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTC
T ss_pred CccCCCCCCCCEeC---------------CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCC
Confidence 47899999998642 24578999999999 6787654 679999999999986555678889999
Q ss_pred cceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCC
Q 039925 108 LTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPE 186 (549)
Q Consensus 108 ~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~ 186 (549)
++|++++|.++...+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..++ |++|++++
T Consensus 64 -~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 64 -RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp -CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC
Confidence 9999999998877677778888999999999988866666778888888888888888766665566665 66666666
Q ss_pred CcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCC
Q 039925 187 NSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIP 266 (549)
Q Consensus 187 n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p 266 (549)
|.++ +..+..+..+ ++|+.|++++|.+++..
T Consensus 143 n~l~----------------------------------------------~~~~~~~~~l--~~L~~L~L~~n~l~~~~- 173 (270)
T 2o6q_A 143 NELQ----------------------------------------------SLPKGVFDKL--TSLKELRLYNNQLKRVP- 173 (270)
T ss_dssp SCCC----------------------------------------------CCCTTTTTTC--TTCCEEECCSSCCSCCC-
T ss_pred CcCC----------------------------------------------ccCHhHccCC--cccceeEecCCcCcEeC-
Confidence 6555 3223334445 66777777777666322
Q ss_pred CcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccc
Q 039925 267 HHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 174 ---~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 174 ---EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp ---TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ---hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 3456667777777777777775444556777777777777777764
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=230.68 Aligned_cols=252 Identities=19% Similarity=0.172 Sum_probs=192.9
Q ss_pred CccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCC
Q 039925 50 TPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNP 129 (549)
Q Consensus 50 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l 129 (549)
+..++++++|++|++++|.+++ +| .|..+++|++|+|++|++++ +| +..+++| ++|++++|.+++. + ++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L-~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNL-TYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTC-SEEECCSSCCSCC-C--CTTC
T ss_pred ccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCC-CEEECcCCCCcee-e--cCCC
Confidence 3467788899999999999984 56 68889999999999999985 44 8888999 9999999998864 3 8889
Q ss_pred CCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEee
Q 039925 130 SAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYY 208 (549)
Q Consensus 130 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ 208 (549)
++|++|++++|.+++ +| +..+++|++|++++|++++. + +..++ |++|++++|...+.++ +. .+++|+.|+
T Consensus 106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~--~~-~l~~L~~L~ 176 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD--VT-PQTQLTTLD 176 (457)
T ss_dssp TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC--CT-TCTTCCEEE
T ss_pred CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc--cc-cCCcCCEEE
Confidence 999999999999885 44 88899999999999998863 3 77777 9999999996655653 44 788999999
Q ss_pred ecc-cccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCc
Q 039925 209 ILL-LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNN 287 (549)
Q Consensus 209 l~~-~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N 287 (549)
++. .+..+. +...++|+.|++++|.+++. .+..+ ++|+.|++++|++++ + | +..+++|++|++++|
T Consensus 177 ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~---~l~~l--~~L~~L~Ls~N~l~~-i----p--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 177 CSFNKITELD-VSQNKLLNRLNCDTNNITKL---DLNQN--IQLTFLDCSSNKLTE-I----D--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CCSSCCCCCC-CTTCTTCCEEECCSSCCSCC---CCTTC--TTCSEEECCSSCCSC-C----C--CTTCTTCSEEECCSS
T ss_pred CCCCccceec-cccCCCCCEEECcCCcCCee---ccccC--CCCCEEECcCCcccc-c----C--ccccCCCCEEEeeCC
Confidence 987 445544 44556899999999998865 36777 899999999999885 4 4 678889999999999
Q ss_pred cccccCCccccCCC-------CCCEEEccCCcccccCCCC--------CCCCCC-CcccCC
Q 039925 288 KLQGNLPSSLGYYQ-------NLMELSVSRNKLSASLPPL--------NSQHNH-SFSCPG 332 (549)
Q Consensus 288 ~l~~~~p~~l~~l~-------~L~~L~Ls~N~l~~~~p~~--------~ls~N~-~~~ip~ 332 (549)
++++..+..+.++. +|+.|++++|.+.+.+|.. ++++|. .+.+|.
T Consensus 244 ~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 244 PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred cCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceecc
Confidence 99865444444333 4455566666655555532 777775 455554
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=243.14 Aligned_cols=218 Identities=18% Similarity=0.125 Sum_probs=185.8
Q ss_pred CCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCE
Q 039925 55 NFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQV 134 (549)
Q Consensus 55 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~ 134 (549)
.+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++| ++|+|++|.+++..+ .++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L-~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTL-RTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTC-CEEECCSSEEEEEEE-----CTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCC-CEEEecCCcCCCCCC-----CCCcCE
Confidence 34589999999999998778899999999999999999996555 8999999 999999999986543 389999
Q ss_pred EEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccc
Q 039925 135 MIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLA 213 (549)
Q Consensus 135 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~ 213 (549)
|++++|.+++..+. .+++|++|+|++|.+++..|..+..++ |++|++++|.+++..|..+...+
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l------------ 168 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS------------ 168 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT------------
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC------------
Confidence 99999999966544 468899999999999998898999999 99999999999987777765333
Q ss_pred cccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccC
Q 039925 214 QKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNL 293 (549)
Q Consensus 214 ~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~ 293 (549)
++|+.|+|++|.+++..+ +..+ ++|+.|+|++|.+++. |..+..+++|+.|+|++|.++ .+
T Consensus 169 ---------~~L~~L~Ls~N~l~~~~~--~~~l--~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~Ls~N~l~-~l 229 (487)
T 3oja_A 169 ---------DTLEHLNLQYNFIYDVKG--QVVF--AKLKTLDLSSNKLAFM-----GPEFQSAAGVTWISLRNNKLV-LI 229 (487)
T ss_dssp ---------TTCCEEECTTSCCCEEEC--CCCC--TTCCEEECCSSCCCEE-----CGGGGGGTTCSEEECTTSCCC-EE
T ss_pred ---------CcccEEecCCCccccccc--cccC--CCCCEEECCCCCCCCC-----CHhHcCCCCccEEEecCCcCc-cc
Confidence 368888888998886633 2246 8999999999999853 345888999999999999999 47
Q ss_pred CccccCCCCCCEEEccCCccc
Q 039925 294 PSSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 294 p~~l~~l~~L~~L~Ls~N~l~ 314 (549)
|..+..+++|+.|++++|.++
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBC
T ss_pred chhhccCCCCCEEEcCCCCCc
Confidence 888889999999999999988
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=224.65 Aligned_cols=239 Identities=14% Similarity=0.104 Sum_probs=201.1
Q ss_pred ecC-ccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccc-cc
Q 039925 48 CLT-PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLL-DF 125 (549)
Q Consensus 48 ~lp-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~-~~ 125 (549)
.+| ..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..+..+++| ++|++++|+++...+ ..
T Consensus 66 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~l~~~~~ 144 (353)
T 2z80_A 66 YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL-TFLNLLGNPYKTLGETSL 144 (353)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC-SEEECTTCCCSSSCSSCS
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC-CEEECCCCCCcccCchhh
Confidence 444 489999999999999999998888899999999999999999995444448999999 999999999996555 58
Q ss_pred cCCCCCCCEEEeecc-eeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCC
Q 039925 126 IGNPSAIQVMIFKEN-SLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPK 203 (549)
Q Consensus 126 ~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~ 203 (549)
|.++++|++|++++| .+....+..|.++++|++|++++|.+.+..|..+..++ |++|++++|.+. .+|..+...+++
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~ 223 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSS 223 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTT
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhccc
Confidence 999999999999999 57767788999999999999999999998899999999 999999999997 677777667999
Q ss_pred CcEeeecc-ccccc-----ccccCcccccEEEcccccccc----ccChhhhhccccCccEEEcCCCcccccCCCcCcccc
Q 039925 204 GRNYYILL-LAQKL-----YWSDVSTTATIIAMGGNQISG----TITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSL 273 (549)
Q Consensus 204 L~~L~l~~-~~~~l-----~~l~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l 273 (549)
|+.|++++ .+... ........++.++++++.+.+ .+|..+..+ ++|+.|++++|+++ .+| +..+
T Consensus 224 L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l--~~L~~L~Ls~N~l~-~i~---~~~~ 297 (353)
T 2z80_A 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI--SGLLELEFSRNQLK-SVP---DGIF 297 (353)
T ss_dssp EEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC--TTCCEEECCSSCCC-CCC---TTTT
T ss_pred ccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc--cCCCEEECCCCCCC-ccC---HHHH
Confidence 99999998 22222 222334578888898888876 467778888 99999999999998 554 2336
Q ss_pred CCccccCeeeccCccccccCC
Q 039925 274 GNLTLLTYLALDNNKLQGNLP 294 (549)
Q Consensus 274 ~~l~~L~~L~Ls~N~l~~~~p 294 (549)
..+++|++|+|++|.+.+..|
T Consensus 298 ~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTCTTCCEEECCSSCBCCCHH
T ss_pred hcCCCCCEEEeeCCCccCcCC
Confidence 899999999999999986443
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-25 Score=229.97 Aligned_cols=195 Identities=21% Similarity=0.242 Sum_probs=117.0
Q ss_pred eecCccccCCCCCCEEEccCCcceecCCccccCCCCC-------------CEeecccccccc------------------
Q 039925 47 KCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRL-------------EYLLLANNHFSG------------------ 95 (549)
Q Consensus 47 g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-------------~~L~Ls~n~l~~------------------ 95 (549)
|.+|++|+++++|++|++++|.+.+.+|..++++++| ++|++++|.+++
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l 103 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSL 103 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTCSEEECCSSCC
T ss_pred hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCCCEEEccCCcC
Confidence 5666666666666666666666666666666655442 455555555442
Q ss_pred -cCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccc
Q 039925 96 -KIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFI 174 (549)
Q Consensus 96 -~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 174 (549)
.+|.. .++| ++|++++|++++. +.. .++|++|++++|.+++ +| .|+++++|++|++++|++++ +|..+
T Consensus 104 ~~lp~~---~~~L-~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~ 172 (454)
T 1jl5_A 104 TELPEL---PQSL-KSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP 172 (454)
T ss_dssp SSCCCC---CTTC-CEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC
T ss_pred Cccccc---cCCC-cEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc
Confidence 13322 1344 5555555555431 111 1578888888888874 66 58888888888888888774 45432
Q ss_pred cccccceeeCCCCcCcccCchhhhhcCCCCcEeeecc-cccccccccCcccccEEEccccccccccChhhhhccccCccE
Q 039925 175 FNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILL-LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYA 253 (549)
Q Consensus 175 ~~l~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~-~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~ 253 (549)
. .|++|++++|.+++ +| .+. .+++|+.|++++ .+..+. ...++|+.|++++|.+. .+| .+..+ ++|+.
T Consensus 173 ~--~L~~L~L~~n~l~~-l~-~~~-~l~~L~~L~l~~N~l~~l~--~~~~~L~~L~l~~n~l~-~lp-~~~~l--~~L~~ 241 (454)
T 1jl5_A 173 P--SLEFIAAGNNQLEE-LP-ELQ-NLPFLTAIYADNNSLKKLP--DLPLSLESIVAGNNILE-ELP-ELQNL--PFLTT 241 (454)
T ss_dssp T--TCCEEECCSSCCSS-CC-CCT-TCTTCCEEECCSSCCSSCC--CCCTTCCEEECCSSCCS-SCC-CCTTC--TTCCE
T ss_pred c--cccEEECcCCcCCc-Cc-ccc-CCCCCCEEECCCCcCCcCC--CCcCcccEEECcCCcCC-ccc-ccCCC--CCCCE
Confidence 1 28888888888874 66 454 788888888876 233322 12347888888888777 455 36677 77888
Q ss_pred EEcCCCcccc
Q 039925 254 LTMVKNKLSG 263 (549)
Q Consensus 254 L~L~~n~l~~ 263 (549)
|++++|++++
T Consensus 242 L~l~~N~l~~ 251 (454)
T 1jl5_A 242 IYADNNLLKT 251 (454)
T ss_dssp EECCSSCCSS
T ss_pred EECCCCcCCc
Confidence 8888887763
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-26 Score=228.67 Aligned_cols=228 Identities=14% Similarity=0.144 Sum_probs=184.1
Q ss_pred cCccccCCCCCCEEEccCCcce-ecCCcccc-------CCCCCCEeecccccccccCCccc--ccccCccceeeeccccc
Q 039925 49 LTPHVGNFGYLRFINLVDNNFR-GEIPEKVG-------RLFRLEYLLLANNHFSGKIPANL--SHCSNLLTKLFICETHL 118 (549)
Q Consensus 49 lp~~~~~l~~L~~L~L~~n~l~-~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~~L~Ls~n~l 118 (549)
+|..+... |+.|+|++|.++ ..+|..+. ++++|++|+|++|++++.+|..+ ..+++| ++|++++|++
T Consensus 57 ~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L-~~L~Ls~N~l 133 (312)
T 1wwl_A 57 DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL-NILNLRNVSW 133 (312)
T ss_dssp CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCC-SEEEEESCBC
T ss_pred cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCc-cEEEccCCCC
Confidence 36655544 888999999984 45777665 78999999999999998888876 889999 9999999999
Q ss_pred ccccccccCCC-----CCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceec--ccccc--cccc-cceeeCCCCc
Q 039925 119 SGQLLDFIGNP-----SAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL--IPSFI--FNIS-LKWNFLPENS 188 (549)
Q Consensus 119 ~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~--~~l~-L~~L~l~~n~ 188 (549)
++. |..++.+ ++|++|+|++|++++..|..|..+++|++|++++|++.+. .+..+ ..++ |++|++++|.
T Consensus 134 ~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 134 ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence 877 7777766 8999999999999977778999999999999999998765 33344 7778 9999999999
Q ss_pred Ccc--cCchhhhhcCCCCcEeeeccc-cccc---ccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCccc
Q 039925 189 FTG--NLPLEIGVTLPKGRNYYILLL-AQKL---YWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLS 262 (549)
Q Consensus 189 l~~--~~p~~~~~~l~~L~~L~l~~~-~~~l---~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~ 262 (549)
+++ .++..++..+++|+.|+++++ +... ......++|+.|++++|.++ .+|..+. ++|+.|+|++|+++
T Consensus 213 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~----~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP----AKLSVLDLSYNRLD 287 (312)
T ss_dssp CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC----SEEEEEECCSSCCC
T ss_pred CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc----CCceEEECCCCCCC
Confidence 983 344455557899999999883 3332 23334579999999999999 6676554 68999999999998
Q ss_pred ccCCCcCccccCCccccCeeeccCccccc
Q 039925 263 GPIPHHIASSLGNLTLLTYLALDNNKLQG 291 (549)
Q Consensus 263 ~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (549)
+. |. +..+++|++|+|++|.+++
T Consensus 288 ~~-----p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 288 RN-----PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SC-----CC-TTTSCEEEEEECTTCTTTC
T ss_pred CC-----hh-HhhCCCCCEEeccCCCCCC
Confidence 43 34 8899999999999999984
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=211.42 Aligned_cols=225 Identities=17% Similarity=0.154 Sum_probs=158.6
Q ss_pred cceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeec
Q 039925 35 GVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFIC 114 (549)
Q Consensus 35 gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls 114 (549)
.+.|... +++ .+|..+. ++|++|++++|.+++..+..|.++++|++|+|++|.+++..+..+..+++| ++|+++
T Consensus 11 ~~~c~~~--~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~ 84 (276)
T 2z62_A 11 TYQCMEL--NFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL-STLILT 84 (276)
T ss_dssp EEECTTS--CCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTC-CEEECT
T ss_pred eEEecCC--Ccc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCC-CEEECC
Confidence 4667542 222 4566553 478899999999886666688888899999999998886666678888888 888888
Q ss_pred ccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceec-ccccccccc-cceeeCCCCcCccc
Q 039925 115 ETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL-IPSFIFNIS-LKWNFLPENSFTGN 192 (549)
Q Consensus 115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~-L~~L~l~~n~l~~~ 192 (549)
+|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..++ |++|++++|++++.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 8888877777888888888888888888866565788888888888888887753 466666666 66666666666533
Q ss_pred CchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCcc----EEEcCCCcccccCCCc
Q 039925 193 LPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLY----ALTMVKNKLSGPIPHH 268 (549)
Q Consensus 193 ~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~----~L~L~~n~l~~~~p~~ 268 (549)
. +..+..+ .+|+ .|++++|.+++..
T Consensus 165 ~----------------------------------------------~~~~~~l--~~L~~l~l~L~ls~n~l~~~~--- 193 (276)
T 2z62_A 165 Y----------------------------------------------CTDLRVL--HQMPLLNLSLDLSLNPMNFIQ--- 193 (276)
T ss_dssp C----------------------------------------------GGGGHHH--HTCTTCCEEEECCSSCCCEEC---
T ss_pred C----------------------------------------------HHHhhhh--hhccccceeeecCCCcccccC---
Confidence 2 2333333 3333 6677777776322
Q ss_pred CccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCC
Q 039925 269 IASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLP 318 (549)
Q Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 318 (549)
.......+|++|++++|++++..+..|..+++|+.|++++|++++..|
T Consensus 194 --~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 194 --PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp --TTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred --ccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 222233467888888888875555556778888888888888876444
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=209.67 Aligned_cols=224 Identities=19% Similarity=0.164 Sum_probs=148.2
Q ss_pred EEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecce
Q 039925 62 INLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENS 141 (549)
Q Consensus 62 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 141 (549)
.+-.+.+++ .+|..+. ++|++|++++|++++..+..|..+++| ++|++++|.+++..+..|.++++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPEL-QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTC-SEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCC-cEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 444444555 5665443 467777777777775545566777777 777777777766666667777777777777777
Q ss_pred eeeeCCccccCCCCCCEEecccCcceecccccccccccceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccC
Q 039925 142 LEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDV 221 (549)
Q Consensus 142 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~ 221 (549)
+++..+..|.++++|++|++++|.+.+..+..+..++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------------------------------------- 124 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK------------------------------------------- 124 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT-------------------------------------------
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCC-------------------------------------------
Confidence 7666666666677777777766666544333344333
Q ss_pred cccccEEEccccccccc-cChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccC----eeeccCccccccCCcc
Q 039925 222 STTATIIAMGGNQISGT-ITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLT----YLALDNNKLQGNLPSS 296 (549)
Q Consensus 222 ~~~L~~L~l~~n~l~~~-~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~----~L~Ls~N~l~~~~p~~ 296 (549)
+|++|++++|.+.+. +|..+..+ ++|+.|++++|++++.. +..+..+++|+ .|++++|.+++..+..
T Consensus 125 --~L~~L~l~~n~l~~~~l~~~~~~l--~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~ 196 (276)
T 2z62_A 125 --TLKELNVAHNLIQSFKLPEYFSNL--TNLEHLDLSSNKIQSIY----CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196 (276)
T ss_dssp --TCCEEECCSSCCCCCCCCGGGGGC--TTCCEEECCSSCCCEEC----GGGGHHHHTCTTCCEEEECCSSCCCEECTTS
T ss_pred --CCCEEECcCCccceecCchhhccC--CCCCEEECCCCCCCcCC----HHHhhhhhhccccceeeecCCCcccccCccc
Confidence 455555555555542 46777778 99999999999998543 45666777777 8999999999655554
Q ss_pred ccCCCCCCEEEccCCcccccCCCCCCCCCCCcccCCcccccccceeeecCCCCCCCC
Q 039925 297 LGYYQNLMELSVSRNKLSASLPPLNSQHNHSFSCPGFEFSVIKLEFQIPGNKKLCGG 353 (549)
Q Consensus 297 l~~l~~L~~L~Ls~N~l~~~~p~~~ls~N~~~~ip~~~~~~l~l~~~~~gn~~~c~~ 353 (549)
+ ...+|+.|++++|++++. |...+.. +..+.. +.+.+||+.|..
T Consensus 197 ~-~~~~L~~L~L~~n~l~~~-~~~~~~~----------l~~L~~-L~l~~N~~~c~c 240 (276)
T 2z62_A 197 F-KEIRLKELALDTNQLKSV-PDGIFDR----------LTSLQK-IWLHTNPWDCSC 240 (276)
T ss_dssp S-CSCCEEEEECCSSCCSCC-CTTTTTT----------CCSCCE-EECCSSCBCCCT
T ss_pred c-CCCcccEEECCCCceeec-CHhHhcc----------cccccE-EEccCCcccccC
Confidence 4 445899999999999853 3221111 122222 778899988865
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-25 Score=235.81 Aligned_cols=256 Identities=20% Similarity=0.236 Sum_probs=162.7
Q ss_pred CCCCCCCCCCCCCCCCcc--------eeCCC--------CCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCC
Q 039925 19 GVTSSWSNSIDLCQWRGV--------TCTHQ--------HQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFR 82 (549)
Q Consensus 19 ~~~~~w~~~~~~c~w~gv--------~c~~~--------~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 82 (549)
..+++|....++|.|+|. .|... ..++ ..+|..+. ++|++|+|++|.|+ .+|. .+++
T Consensus 10 ~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~ 82 (622)
T 3g06_A 10 AVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPE 82 (622)
T ss_dssp CHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSCCCS-CCCC---CCTT
T ss_pred HHHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCc-CccChhhC--CCCcEEEecCCCCC-CCCC---cCCC
Confidence 355678777789999552 22211 1122 36787665 79999999999999 6776 5789
Q ss_pred CCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecc
Q 039925 83 LEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNIN 162 (549)
Q Consensus 83 L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 162 (549)
|++|+|++|+|+ .+|. .+++| ++|++++|.+++. |. .+++|+.|++++|+++ .+|.. +++|++|+++
T Consensus 83 L~~L~Ls~N~l~-~lp~---~l~~L-~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls 149 (622)
T 3g06_A 83 LRTLEVSGNQLT-SLPV---LPPGL-LELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVS 149 (622)
T ss_dssp CCEEEECSCCCS-CCCC---CCTTC-CEEEECSCCCCCC-CC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECC
T ss_pred CCEEEcCCCcCC-cCCC---CCCCC-CEEECcCCcCCCC-CC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECc
Confidence 999999999998 6776 67888 9999999999854 33 5688899999999888 46653 4788888888
Q ss_pred cCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecc-cccccccc------------------cCc
Q 039925 163 RNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILL-LAQKLYWS------------------DVS 222 (549)
Q Consensus 163 ~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~-~~~~l~~l------------------~~~ 222 (549)
+|.+++ +|.. +. |+.|++++|.++ .+| ..+++|+.|++++ .+..+... ...
T Consensus 150 ~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~ 220 (622)
T 3g06_A 150 DNQLAS-LPAL---PSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALP 220 (622)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCC
T ss_pred CCcCCC-cCCc---cCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCC
Confidence 888874 3332 23 555666666555 344 1345555555554 12221110 112
Q ss_pred ccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCC
Q 039925 223 TTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQN 302 (549)
Q Consensus 223 ~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 302 (549)
++|+.|++++|.+++ +| ..+ ++|+.|+|++|.++ .+ |. .+++|+.|+|++|+|+ .+|..+..+++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l--~~L~~L~Ls~N~L~-~l----p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~ 285 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLP--SELKELMVSGNRLT-SL----PM---LPSGLLSLSVYRNQLT-RLPESLIHLSS 285 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCC--TTCCEEECCSSCCS-CC----CC---CCTTCCEEECCSSCCC-SCCGGGGGSCT
T ss_pred CCCCEEEccCCccCc-CC---CCC--CcCcEEECCCCCCC-cC----Cc---ccccCcEEeCCCCCCC-cCCHHHhhccc
Confidence 455566666665553 23 223 55666666666655 23 22 3455666666666666 55666666666
Q ss_pred CCEEEccCCcccccCC
Q 039925 303 LMELSVSRNKLSASLP 318 (549)
Q Consensus 303 L~~L~Ls~N~l~~~~p 318 (549)
|+.|+|++|++++.+|
T Consensus 286 L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 286 ETTVNLEGNPLSERTL 301 (622)
T ss_dssp TCEEECCSCCCCHHHH
T ss_pred cCEEEecCCCCCCcCH
Confidence 6666666666665433
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-25 Score=217.70 Aligned_cols=219 Identities=17% Similarity=0.119 Sum_probs=180.1
Q ss_pred CCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEe
Q 039925 58 YLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIF 137 (549)
Q Consensus 58 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 137 (549)
.++.++++.+.+...+...+..+++|++|+|++|++++..|..|..+++| ++|++++|.+++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL-ELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTC-CEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcC-CEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 35667777887775555666778899999999999997777889999999 999999999987665 899999999999
Q ss_pred ecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeeccccccc
Q 039925 138 KENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKL 216 (549)
Q Consensus 138 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l 216 (549)
++|.+++. + ..++|++|++++|.+.+..+.. ++ |++|++++|.+++..+..+. .
T Consensus 88 s~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~-~---------------- 142 (317)
T 3o53_A 88 NNNYVQEL-L----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEG-C---------------- 142 (317)
T ss_dssp CSSEEEEE-E----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTG-G----------------
T ss_pred cCCccccc-c----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhh-c----------------
Confidence 99999843 2 3489999999999998765543 45 99999999999954444443 2
Q ss_pred ccccCcccccEEEccccccccccChhhh-hccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCc
Q 039925 217 YWSDVSTTATIIAMGGNQISGTITLGIK-KLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPS 295 (549)
Q Consensus 217 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~ 295 (549)
.++|+.|++++|.+++..+..+. .+ ++|+.|++++|.+++. + ....+++|++|+|++|+++ .+|.
T Consensus 143 -----l~~L~~L~Ls~N~l~~~~~~~~~~~l--~~L~~L~L~~N~l~~~-----~-~~~~l~~L~~L~Ls~N~l~-~l~~ 208 (317)
T 3o53_A 143 -----RSRVQYLDLKLNEIDTVNFAELAASS--DTLEHLNLQYNFIYDV-----K-GQVVFAKLKTLDLSSNKLA-FMGP 208 (317)
T ss_dssp -----GSSEEEEECTTSCCCEEEGGGGGGGT--TTCCEEECTTSCCCEE-----E-CCCCCTTCCEEECCSSCCC-EECG
T ss_pred -----cCCCCEEECCCCCCCcccHHHHhhcc--CcCCEEECCCCcCccc-----c-cccccccCCEEECCCCcCC-cchh
Confidence 24789999999999987777664 67 9999999999999843 2 2345899999999999999 4666
Q ss_pred cccCCCCCCEEEccCCcccccCCC
Q 039925 296 SLGYYQNLMELSVSRNKLSASLPP 319 (549)
Q Consensus 296 ~l~~l~~L~~L~Ls~N~l~~~~p~ 319 (549)
.+..+++|+.|++++|++++ +|.
T Consensus 209 ~~~~l~~L~~L~L~~N~l~~-l~~ 231 (317)
T 3o53_A 209 EFQSAAGVTWISLRNNKLVL-IEK 231 (317)
T ss_dssp GGGGGTTCSEEECTTSCCCE-ECT
T ss_pred hhcccCcccEEECcCCcccc-hhh
Confidence 79999999999999999995 443
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-24 Score=222.30 Aligned_cols=259 Identities=21% Similarity=0.256 Sum_probs=179.5
Q ss_pred CCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCc------------cceeeeccccccccc
Q 039925 55 NFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNL------------LTKLFICETHLSGQL 122 (549)
Q Consensus 55 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L------------~~~L~Ls~n~l~~~~ 122 (549)
+.++|++|++++|.+ +.+|++|+++++|++|++++|.+.+.+|..++.+++| +++|++++|.+++ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 468999999999999 6999999999999999999999999999999888763 2899999999885 3
Q ss_pred ccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcC
Q 039925 123 LDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTL 201 (549)
Q Consensus 123 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l 201 (549)
|.. .++|++|++++|.+++ +|.. +++|++|++++|++.+ +|.. .+ |++|++++|.+++ +| .+. .+
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~-~l 152 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQ-NS 152 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCT-TC
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccC-CC
Confidence 432 4789999999999995 6754 4789999999999884 3321 15 9999999999984 77 465 89
Q ss_pred CCCcEeeecc-cccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccC
Q 039925 202 PKGRNYYILL-LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLT 280 (549)
Q Consensus 202 ~~L~~L~l~~-~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~ 280 (549)
++|++|++++ .+..+. ....+|++|++++|.+++ +| .+..+ ++|+.|++++|.+++ +| .. .++|+
T Consensus 153 ~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n~l~~-l~-~~~~l--~~L~~L~l~~N~l~~-l~----~~---~~~L~ 218 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEE-LP-ELQNL--PFLTAIYADNNSLKK-LP----DL---PLSLE 218 (454)
T ss_dssp TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS-CC-CCTTC--TTCCEEECCSSCCSS-CC----CC---CTTCC
T ss_pred CCCCEEECCCCcCcccC--CCcccccEEECcCCcCCc-Cc-cccCC--CCCCEEECCCCcCCc-CC----CC---cCccc
Confidence 9999999987 333332 223589999999999986 55 58888 999999999999884 43 22 25788
Q ss_pred eeeccCccccccCCccccCCCCCCEEEccCCcccccCCCC-------CCCCCCCcccCCcccccccceeeecCCC
Q 039925 281 YLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL-------NSQHNHSFSCPGFEFSVIKLEFQIPGNK 348 (549)
Q Consensus 281 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-------~ls~N~~~~ip~~~~~~l~l~~~~~gn~ 348 (549)
+|++++|.++ .+|. +..+++|+.|++++|++++ +|.. ++++|++..+|... ..+.. +.+.+|.
T Consensus 219 ~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~-~~L~~-L~ls~N~ 288 (454)
T 1jl5_A 219 SIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELP-QSLTF-LDVSENI 288 (454)
T ss_dssp EEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCC-TTCCE-EECCSSC
T ss_pred EEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCccc-CcCCE-EECcCCc
Confidence 8999999888 6774 8888899999999998886 3332 78888877777643 33322 4455554
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-24 Score=222.63 Aligned_cols=220 Identities=19% Similarity=0.140 Sum_probs=178.2
Q ss_pred CCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCE
Q 039925 79 RLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFY 158 (549)
Q Consensus 79 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 158 (549)
.+++|++|+|++|.+++..|..|..+++| ++|+|++|.+++..| |..+++|++|+|++|.+++.. ..++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKL-ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTC-CEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCC-CEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 34489999999999998778899999999 999999999987766 999999999999999998533 2389999
Q ss_pred EecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEcccccccc
Q 039925 159 DNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISG 237 (549)
Q Consensus 159 L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~ 237 (549)
|++++|.+.+..+.. ++ |+.|++++|.+++..|..+. .+ ++|+.|++++|.+++
T Consensus 104 L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~-~l---------------------~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 104 LHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEG-CR---------------------SRVQYLDLKLNEIDT 158 (487)
T ss_dssp EECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGG-GG---------------------SSEEEEECTTSCCCE
T ss_pred EECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhc-CC---------------------CCCCEEECCCCCCCC
Confidence 999999999766543 46 99999999999976666554 22 378999999999999
Q ss_pred ccChhhh-hccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCccccc
Q 039925 238 TITLGIK-KLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSAS 316 (549)
Q Consensus 238 ~~~~~~~-~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 316 (549)
..|..+. .+ ++|+.|+|++|.+++.. .+..+++|++|+|++|.+++ +|..+..+++|+.|+|++|.+++
T Consensus 159 ~~~~~l~~~l--~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~- 228 (487)
T 3oja_A 159 VNFAELAASS--DTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL- 228 (487)
T ss_dssp EEGGGGGGGT--TTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-
T ss_pred cChHHHhhhC--CcccEEecCCCcccccc------ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-
Confidence 8888876 68 99999999999998542 24468999999999999995 56669999999999999999996
Q ss_pred CCCCCCCCCCCcccCCcccccccceeeecCCCCCCCC
Q 039925 317 LPPLNSQHNHSFSCPGFEFSVIKLEFQIPGNKKLCGG 353 (549)
Q Consensus 317 ~p~~~ls~N~~~~ip~~~~~~l~l~~~~~gn~~~c~~ 353 (549)
+|.. +.. +..+.. +++.+|+..|+.
T Consensus 229 lp~~-l~~----------l~~L~~-L~l~~N~l~c~~ 253 (487)
T 3oja_A 229 IEKA-LRF----------SQNLEH-FDLRGNGFHCGT 253 (487)
T ss_dssp ECTT-CCC----------CTTCCE-EECTTCCBCHHH
T ss_pred cchh-hcc----------CCCCCE-EEcCCCCCcCcc
Confidence 4432 110 112222 567777777754
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=203.31 Aligned_cols=203 Identities=21% Similarity=0.258 Sum_probs=111.9
Q ss_pred cCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCC
Q 039925 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQ 133 (549)
Q Consensus 54 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~ 133 (549)
..+++|+.|++++|.++ .++ .+..+++|++|++++|.+++ + ..+..+++| ++|++++|.+++..+..|.++++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNL-TYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCC-CEEECCCCccCccChhHhcCCcCCC
Confidence 34555666666666555 232 35555666666666666553 2 245555555 5666666655555555555555555
Q ss_pred EEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccccceeeCCCCcCcccCchhhhhcCCCCcEeeecccc
Q 039925 134 VMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLA 213 (549)
Q Consensus 134 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~ 213 (549)
+|++++|.+++..+..|..+++|++|++++|.+++..+..+..++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----------------------------------- 157 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT----------------------------------- 157 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------------------------------
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-----------------------------------
Confidence 555555555544444455555555555555555544443444444
Q ss_pred cccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccC
Q 039925 214 QKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNL 293 (549)
Q Consensus 214 ~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~ 293 (549)
+|+.|++++|.+++..+..+..+ ++|+.|++++|++++.. +..+..+++|++|++++|.+.+
T Consensus 158 ----------~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~~-- 219 (272)
T 3rfs_A 158 ----------NLTELDLSYNQLQSLPEGVFDKL--TQLKDLRLYQNQLKSVP----DGVFDRLTSLQYIWLHDNPWDC-- 219 (272)
T ss_dssp ----------TCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSCBCC--
T ss_pred ----------cCCEEECCCCCcCccCHHHhcCC--ccCCEEECCCCcCCccC----HHHHhCCcCCCEEEccCCCccc--
Confidence 34444455555554444444555 66666666666666432 3445666666666666666553
Q ss_pred CccccCCCCCCEEEccCCcccccCCC
Q 039925 294 PSSLGYYQNLMELSVSRNKLSASLPP 319 (549)
Q Consensus 294 p~~l~~l~~L~~L~Ls~N~l~~~~p~ 319 (549)
.+++|+.|+++.|.++|.+|.
T Consensus 220 -----~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 220 -----TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp -----CTTTTHHHHHHHHHTGGGBBC
T ss_pred -----cCcHHHHHHHHHHhCCCcccC
Confidence 234566666666666666654
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-23 Score=194.65 Aligned_cols=204 Identities=17% Similarity=0.157 Sum_probs=153.9
Q ss_pred eecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeeccccc-ccccCCcccccccCccceeeecc-ccccccccc
Q 039925 47 KCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNH-FSGKIPANLSHCSNLLTKLFICE-THLSGQLLD 124 (549)
Q Consensus 47 g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~~L~Ls~-n~l~~~~~~ 124 (549)
..+|. +. ++|++|++++|++++..+..|.++++|++|++++|+ ++...+..|..+++| ++|++++ |.++...+.
T Consensus 24 ~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L-~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 24 QRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV-THIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTC-CEEEEEEETTCCEECTT
T ss_pred cccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCC-cEEECCCCCCeeEcCHH
Confidence 35676 43 389999999999996666689999999999999997 885555678899999 9999998 999877778
Q ss_pred ccCCCCCCCEEEeecceeeeeCCccccCCCCCC---EEecccC-cceecccccccccc-cc-eeeCCCCcCcccCchhhh
Q 039925 125 FIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLF---YDNINRN-EFSGLIPSFIFNIS-LK-WNFLPENSFTGNLPLEIG 198 (549)
Q Consensus 125 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~-L~-~L~l~~n~l~~~~p~~~~ 198 (549)
.|.++++|++|++++|.+++ +|. |..+++|+ +|++++| .+.+..+..|..++ |+ +|++++|.++ .+|...+
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~ 176 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAF 176 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTT
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhc
Confidence 89999999999999999984 676 88888888 9999998 88866666677777 77 7777777776 4444322
Q ss_pred hcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCc-ccccCCCcCccccCCc-
Q 039925 199 VTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNK-LSGPIPHHIASSLGNL- 276 (549)
Q Consensus 199 ~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~p~~l~~~l~~l- 276 (549)
.. ++|+.|++++|+ ++ .+| +..|..+
T Consensus 177 ----------------------------------------------~~--~~L~~L~L~~n~~l~-~i~---~~~~~~l~ 204 (239)
T 2xwt_C 177 ----------------------------------------------NG--TKLDAVYLNKNKYLT-VID---KDAFGGVY 204 (239)
T ss_dssp ----------------------------------------------TT--CEEEEEECTTCTTCC-EEC---TTTTTTCS
T ss_pred ----------------------------------------------CC--CCCCEEEcCCCCCcc-cCC---HHHhhccc
Confidence 12 456666666663 55 332 3456677
Q ss_pred cccCeeeccCccccccCCccccCCCCCCEEEccCCc
Q 039925 277 TLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNK 312 (549)
Q Consensus 277 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 312 (549)
++|++|++++|+++ .+|.. .+++|+.|+++++.
T Consensus 205 ~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 205 SGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp BCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred cCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 77888888888887 45543 56777788777653
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-22 Score=214.21 Aligned_cols=247 Identities=21% Similarity=0.258 Sum_probs=199.1
Q ss_pred CCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEE
Q 039925 57 GYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMI 136 (549)
Q Consensus 57 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 136 (549)
.+++.|++++|.++ .+|..+. ++|++|+|++|.|+ .+|. .+++| ++|+|++|+++. +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L-~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPEL-RTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTC-CEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCC-CEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 46999999999999 8888776 89999999999999 6777 57888 999999999985 554 689999999
Q ss_pred eecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecc-ccc
Q 039925 137 FKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILL-LAQ 214 (549)
Q Consensus 137 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~-~~~ 214 (549)
|++|.++ .+|. .+++|++|++++|+++. +|.. ++ |++|++++|.++ .+|. .+++|+.|++++ .+.
T Consensus 108 Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 108 IFSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT 174 (622)
T ss_dssp ECSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred CcCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCC
Confidence 9999999 4565 67899999999999985 5543 36 999999999998 4554 457899999987 444
Q ss_pred ccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCC
Q 039925 215 KLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLP 294 (549)
Q Consensus 215 ~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p 294 (549)
.+. ...++|+.|++++|.+++ +|.. + ++|+.|++++|.++ .+ |. .+++|+.|+|++|++++ +|
T Consensus 175 ~l~--~~~~~L~~L~Ls~N~l~~-l~~~---~--~~L~~L~L~~N~l~-~l----~~---~~~~L~~L~Ls~N~L~~-lp 237 (622)
T 3g06_A 175 SLP--MLPSGLQELSVSDNQLAS-LPTL---P--SELYKLWAYNNRLT-SL----PA---LPSGLKELIVSGNRLTS-LP 237 (622)
T ss_dssp CCC--CCCTTCCEEECCSSCCSC-CCCC---C--TTCCEEECCSSCCS-SC----CC---CCTTCCEEECCSSCCSC-CC
T ss_pred CCc--ccCCCCcEEECCCCCCCC-CCCc---c--chhhEEECcCCccc-cc----CC---CCCCCCEEEccCCccCc-CC
Confidence 444 445799999999999985 3432 3 78999999999998 34 32 24789999999999994 66
Q ss_pred ccccCCCCCCEEEccCCcccccCCCC-------CCCCCCCcccCCcc--cccccceeeecCCCCC
Q 039925 295 SSLGYYQNLMELSVSRNKLSASLPPL-------NSQHNHSFSCPGFE--FSVIKLEFQIPGNKKL 350 (549)
Q Consensus 295 ~~l~~l~~L~~L~Ls~N~l~~~~p~~-------~ls~N~~~~ip~~~--~~~l~l~~~~~gn~~~ 350 (549)
..+++|+.|+|++|+|+. +|.. ++++|++..+|..+ +..+.. +++.+|+..
T Consensus 238 ---~~l~~L~~L~Ls~N~L~~-lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~-L~L~~N~l~ 297 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETT-VNLEGNPLS 297 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCE-EECCSCCCC
T ss_pred ---CCCCcCcEEECCCCCCCc-CCcccccCcEEeCCCCCCCcCCHHHhhccccCE-EEecCCCCC
Confidence 456899999999999985 4433 89999999999876 444433 677888754
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.3e-23 Score=199.53 Aligned_cols=203 Identities=20% Similarity=0.189 Sum_probs=136.4
Q ss_pred ccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCC
Q 039925 53 VGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAI 132 (549)
Q Consensus 53 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L 132 (549)
+.++++++.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|..+++| ++|++++|.+++..+. +.+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRL-TQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTC-CEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCC-CEEECCCCccCcccCC--CCCCcC
Confidence 566777888888888877 6666554 577888888888876666777777777 7888888777754332 667777
Q ss_pred CEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecc
Q 039925 133 QVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILL 211 (549)
Q Consensus 133 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~ 211 (549)
++|++++|.++ .+|..+..+++|++|++++|++++..+..|..++ |++|++++|+++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~--------------------- 137 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK--------------------- 137 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC---------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC---------------------
Confidence 77777777777 6677777777777777777777755555566665 666666666555
Q ss_pred cccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccc
Q 039925 212 LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQG 291 (549)
Q Consensus 212 ~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (549)
+..+..|..+ ++|+.|+|++|+++ .+| +..+..+++|++|+|++|+++
T Consensus 138 -------------------------~~~~~~~~~l--~~L~~L~L~~N~l~-~l~---~~~~~~l~~L~~L~L~~N~l~- 185 (290)
T 1p9a_G 138 -------------------------TLPPGLLTPT--PKLEKLSLANNNLT-ELP---AGLLNGLENLDTLLLQENSLY- 185 (290)
T ss_dssp -------------------------CCCTTTTTTC--TTCCEEECTTSCCS-CCC---TTTTTTCTTCCEEECCSSCCC-
T ss_pred -------------------------ccChhhcccc--cCCCEEECCCCcCC-ccC---HHHhcCcCCCCEEECCCCcCC-
Confidence 3333334444 66666666666666 332 234566677777777777776
Q ss_pred cCCccccCCCCCCEEEccCCcccc
Q 039925 292 NLPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 292 ~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
.+|..+..+++|+.|+|++|.+..
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccChhhcccccCCeEEeCCCCccC
Confidence 566666666677777777777653
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-25 Score=226.82 Aligned_cols=250 Identities=16% Similarity=0.190 Sum_probs=188.6
Q ss_pred ecCccccCCCCCCEEEccCCcceec----CCccccCCCCCCEeecccc---cccccCCccc-------ccccCccceeee
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGE----IPEKVGRLFRLEYLLLANN---HFSGKIPANL-------SHCSNLLTKLFI 113 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~~L~L 113 (549)
.++..+..+++|++|+|++|.++.. ++..|..+++|++|+|++| ++++.+|..+ ..+++| ++|+|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L-~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL-HTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC-CEEEC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc-cEEEC
Confidence 5677788889999999999998865 3445778999999999986 4455666655 678888 99999
Q ss_pred ccccccc----ccccccCCCCCCCEEEeecceeeeeCCcc----ccCC---------CCCCEEecccCcce-eccc---c
Q 039925 114 CETHLSG----QLLDFIGNPSAIQVMIFKENSLEGKFPNT----LSNL---------RSLFYDNINRNEFS-GLIP---S 172 (549)
Q Consensus 114 s~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~----~~~l---------~~L~~L~L~~n~l~-~~~p---~ 172 (549)
++|.++. .+|..+..+++|++|+|++|.++...+.. +..+ ++|++|++++|.+. ..++ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9999887 46778888899999999999886443333 3334 88999999999887 3344 4
Q ss_pred cccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccc----cccChhhhhcc
Q 039925 173 FIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQIS----GTITLGIKKLI 247 (549)
Q Consensus 173 ~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~----~~~~~~~~~l~ 247 (549)
.+..++ |++|++++|.++..--..+.. ..+...++|+.|+|++|.++ ..+|..+..+
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~-----------------~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~- 243 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLL-----------------EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW- 243 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHH-----------------TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC-
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHH-----------------HHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC-
Confidence 566777 999999999887321001110 01112347889999999996 5677888888
Q ss_pred ccCccEEEcCCCcccccCCCcCcccc--CCccccCeeeccCccccc----cCCccc-cCCCCCCEEEccCCcccccC
Q 039925 248 FVNLYALTMVKNKLSGPIPHHIASSL--GNLTLLTYLALDNNKLQG----NLPSSL-GYYQNLMELSVSRNKLSASL 317 (549)
Q Consensus 248 ~~~L~~L~L~~n~l~~~~p~~l~~~l--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~ 317 (549)
++|+.|+|++|.+++.....++..+ +.+++|++|+|++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 244 -~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 244 -PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp -TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred -CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 9999999999999865322335666 448999999999999997 478777 66899999999999998643
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=198.25 Aligned_cols=206 Identities=20% Similarity=0.201 Sum_probs=151.9
Q ss_pred cccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCC
Q 039925 76 KVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRS 155 (549)
Q Consensus 76 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 155 (549)
.+.++++|+++++++|.++ .+|..+. +.+ +.|++++|.+++..+..|..+++|++|+|++|.+++..+ ...+++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDT-TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTC-CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTT
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCC-CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCc
Confidence 3667888899999988888 6776664 567 888888888887777788888888888888888874332 256777
Q ss_pred CCEEecccCcceecccccccccccceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEcccccc
Q 039925 156 LFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQI 235 (549)
Q Consensus 156 L~~L~L~~n~l~~~~p~~~~~l~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l 235 (549)
|++|++++|++. .+|..+..++ +|+.|++++|++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~---------------------------------------------~L~~L~l~~N~l 112 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLP---------------------------------------------ALTVLDVSFNRL 112 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCT---------------------------------------------TCCEEECCSSCC
T ss_pred CCEEECCCCcCC-cCchhhccCC---------------------------------------------CCCEEECCCCcC
Confidence 777777777765 3443333333 455566666666
Q ss_pred ccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccc
Q 039925 236 SGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 236 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
++..+..|..+ ++|+.|+|++|++++ +| +..|..+++|+.|+|++|+++...+..|..+++|+.|+|++|+++.
T Consensus 113 ~~l~~~~~~~l--~~L~~L~L~~N~l~~-~~---~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 113 TSLPLGALRGL--GELQELYLKGNELKT-LP---PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp CCCCSSTTTTC--TTCCEEECTTSCCCC-CC---TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cccCHHHHcCC--CCCCEEECCCCCCCc-cC---hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 65556677778 999999999999984 43 4667899999999999999996555667899999999999999983
Q ss_pred cCCCCCCCCCCCcccCCcccccccce-eeecCCCCCCCC
Q 039925 316 SLPPLNSQHNHSFSCPGFEFSVIKLE-FQIPGNKKLCGG 353 (549)
Q Consensus 316 ~~p~~~ls~N~~~~ip~~~~~~l~l~-~~~~gn~~~c~~ 353 (549)
+|. .++....++ +.+.|||+.|..
T Consensus 187 -ip~-------------~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 187 -IPK-------------GFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp -CCT-------------TTTTTCCCSEEECCSCCBCCSG
T ss_pred -cCh-------------hhcccccCCeEEeCCCCccCcC
Confidence 443 332221221 778999999963
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-23 Score=206.55 Aligned_cols=243 Identities=14% Similarity=0.104 Sum_probs=188.6
Q ss_pred CCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCc-ccccccCccc
Q 039925 31 CQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPA-NLSHCSNLLT 109 (549)
Q Consensus 31 c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~ 109 (549)
|+|+.|.|+. .+++ .||..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+|. .|.+++++++
T Consensus 9 C~~~~v~C~~--~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 9 CSNRVFLCQE--SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp EETTEEEEES--TTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred eeCCEEEecC--CCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 6899999975 3444 678766 36899999999999954456899999999999999998766664 5788988845
Q ss_pred eeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEeccc-Ccceecccccccccc--cceeeCCC
Q 039925 110 KLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINR-NEFSGLIPSFIFNIS--LKWNFLPE 186 (549)
Q Consensus 110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~--L~~L~l~~ 186 (549)
.+.++.|+++...|..|..+++|++|++++|++....+..+....++..|++.+ +.+....+..|..+. ++.|++++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 688888999988899999999999999999999966666777888899999976 567666666777775 89999999
Q ss_pred CcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccc-cccccccChhhhhccccCccEEEcCCCcccccC
Q 039925 187 NSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGG-NQISGTITLGIKKLIFVNLYALTMVKNKLSGPI 265 (549)
Q Consensus 187 n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 265 (549)
|+++ .+|..++ .. .+|+.|++++ |.++...+..|..+ ++|+.|+|++|+++ .+
T Consensus 164 N~i~-~i~~~~f-~~---------------------~~L~~l~l~~~n~l~~i~~~~f~~l--~~L~~LdLs~N~l~-~l 217 (350)
T 4ay9_X 164 NGIQ-EIHNSAF-NG---------------------TQLDELNLSDNNNLEELPNDVFHGA--SGPVILDISRTRIH-SL 217 (350)
T ss_dssp SCCC-EECTTSS-TT---------------------EEEEEEECTTCTTCCCCCTTTTTTE--ECCSEEECTTSCCC-CC
T ss_pred cccc-CCChhhc-cc---------------------cchhHHhhccCCcccCCCHHHhccC--cccchhhcCCCCcC-cc
Confidence 9998 6666554 11 2678888875 66665545678888 99999999999998 45
Q ss_pred CCcCccccCCccccCeeeccCc-cccccCCccccCCCCCCEEEccCCc
Q 039925 266 PHHIASSLGNLTLLTYLALDNN-KLQGNLPSSLGYYQNLMELSVSRNK 312 (549)
Q Consensus 266 p~~l~~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~ 312 (549)
| +..+. +|+.|.+.++ .+. .+|. +..+++|+.++++++.
T Consensus 218 p---~~~~~---~L~~L~~l~~~~l~-~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 218 P---SYGLE---NLKKLRARSTYNLK-KLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp C---SSSCT---TCCEEECTTCTTCC-CCCC-TTTCCSCCEEECSCHH
T ss_pred C---hhhhc---cchHhhhccCCCcC-cCCC-chhCcChhhCcCCCCc
Confidence 4 23344 4445544443 344 6674 8889999999998764
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=195.66 Aligned_cols=211 Identities=17% Similarity=0.245 Sum_probs=159.9
Q ss_pred CCCCCCCCCC--CCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCc
Q 039925 22 SSWSNSIDLC--QWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPA 99 (549)
Q Consensus 22 ~~w~~~~~~c--~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 99 (549)
=.|.+..=-| .|..+.|+. .+++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.++...+.
T Consensus 5 C~~~~~~C~c~~~~~~l~~~~--~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~ 79 (270)
T 2o6q_A 5 CKKDGGVCSCNNNKNSVDCSS--KKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79 (270)
T ss_dssp BGGGTCSBEEETTTTEEECTT--SCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred CCCCCCCCEeCCCCCEEEccC--CCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence 3575444124 578899975 3444 5676654 6899999999999966667899999999999999999954444
Q ss_pred ccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-
Q 039925 100 NLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS- 178 (549)
Q Consensus 100 ~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~- 178 (549)
.|..+++| ++|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|+|++|.+.+..+..|..++
T Consensus 80 ~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 80 IFKELKNL-ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp TTSSCTTC-CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhcCCCCC-CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 56889999 9999999999988888899999999999999999987788899999999999999999976666678888
Q ss_pred cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCC
Q 039925 179 LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVK 258 (549)
Q Consensus 179 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~ 258 (549)
|++|++++|.+++..+..+. .+ ++|+.|++++|.+++..+..+..+ ++|+.|+|++
T Consensus 159 L~~L~L~~n~l~~~~~~~~~-~l---------------------~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~l~~ 214 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFD-KL---------------------TELKTLKLDNNQLKRVPEGAFDSL--EKLKMLQLQE 214 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTT-TC---------------------TTCCEEECCSSCCSCCCTTTTTTC--TTCCEEECCS
T ss_pred cceeEecCCcCcEeChhHhc-cC---------------------CCcCEEECCCCcCCcCCHHHhccc--cCCCEEEecC
Confidence 88888888888732222222 12 245556666666655444445555 5666666666
Q ss_pred Cccc
Q 039925 259 NKLS 262 (549)
Q Consensus 259 n~l~ 262 (549)
|.+.
T Consensus 215 N~~~ 218 (270)
T 2o6q_A 215 NPWD 218 (270)
T ss_dssp SCBC
T ss_pred CCee
Confidence 6554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-24 Score=220.25 Aligned_cols=254 Identities=17% Similarity=0.137 Sum_probs=185.3
Q ss_pred ceEeecCccccCCCCCCEEEccCCcceecCC----ccccCCC-CCCEeecccccccccCCcccccc-----cCccceeee
Q 039925 44 RINKCLTPHVGNFGYLRFINLVDNNFRGEIP----EKVGRLF-RLEYLLLANNHFSGKIPANLSHC-----SNLLTKLFI 113 (549)
Q Consensus 44 ~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~~L~L 113 (549)
++.|.+|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|.+++..+..+..+ ++| ++|+|
T Consensus 9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L-~~L~L 87 (362)
T 3goz_A 9 PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV-TSLNL 87 (362)
T ss_dssp TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC-CEEEC
T ss_pred cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc-cEEEC
Confidence 4455667666666779999999999885555 6777888 89999999999987767777665 888 99999
Q ss_pred cccccccccccc----cCCC-CCCCEEEeecceeeeeCCccc----cC-CCCCCEEecccCcceeccc----ccccccc-
Q 039925 114 CETHLSGQLLDF----IGNP-SAIQVMIFKENSLEGKFPNTL----SN-LRSLFYDNINRNEFSGLIP----SFIFNIS- 178 (549)
Q Consensus 114 s~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~p~~~----~~-l~~L~~L~L~~n~l~~~~p----~~~~~l~- 178 (549)
++|.+++..+.. +..+ ++|++|+|++|.+++..+..+ .. .++|++|+|++|.+....+ ..+....
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 167 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence 999988766654 3344 789999999999885544443 33 3689999999998885333 3344443
Q ss_pred -cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccc----cChhhhhccccCccE
Q 039925 179 -LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGT----ITLGIKKLIFVNLYA 253 (549)
Q Consensus 179 -L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~~~L~~ 253 (549)
|++|++++|++++..+..+...+. ...++|+.|++++|.+++. ++..+.... ++|+.
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~-----------------~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~-~~L~~ 229 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLA-----------------SIPASVTSLDLSANLLGLKSYAELAYIFSSIP-NHVVS 229 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHH-----------------TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSC-TTCCE
T ss_pred cccEeeecCCCCchhhHHHHHHHHH-----------------hCCCCCCEEECCCCCCChhHHHHHHHHHhcCC-CCceE
Confidence 899999999888666655542111 1113799999999999863 444555530 58999
Q ss_pred EEcCCCcccccCCCcCccccCCccccCeeeccCcccccc-------CCccccCCCCCCEEEccCCccccc
Q 039925 254 LTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGN-------LPSSLGYYQNLMELSVSRNKLSAS 316 (549)
Q Consensus 254 L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~ 316 (549)
|+|++|.+++..+..+...+..+++|+.|+|++|.+.+. ++..+..+++|+.||+++|++...
T Consensus 230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 999999998654333445567889999999999985432 334677888999999999998865
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-25 Score=231.48 Aligned_cols=296 Identities=15% Similarity=0.098 Sum_probs=192.0
Q ss_pred ecCccccCCCCCCEEEccCCcceecCCccc-cCCC----CCCEeecccccccc----cCCcccccccCccceeeeccccc
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGEIPEKV-GRLF----RLEYLLLANNHFSG----KIPANLSHCSNLLTKLFICETHL 118 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~----~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~~L~Ls~n~l 118 (549)
.++..+..+++|++|+|++|.+++..+..+ ..++ +|++|+|++|.++. .+|..+..+++| ++|++++|.+
T Consensus 47 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L-~~L~Ls~n~i 125 (461)
T 1z7x_W 47 DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL-QELHLSDNLL 125 (461)
T ss_dssp HHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTC-CEEECCSSBC
T ss_pred HHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCce-eEEECCCCcC
Confidence 455667777788888888887765333322 2344 58888888887773 456777777787 8888888877
Q ss_pred ccccccc-----cCCCCCCCEEEeecceeeee----CCccccCCCCCCEEecccCcceeccccccc-----ccc-cceee
Q 039925 119 SGQLLDF-----IGNPSAIQVMIFKENSLEGK----FPNTLSNLRSLFYDNINRNEFSGLIPSFIF-----NIS-LKWNF 183 (549)
Q Consensus 119 ~~~~~~~-----~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~-L~~L~ 183 (549)
+...+.. +...++|++|++++|.++.. ++..+..+++|++|++++|.+....+..+. ..+ |++|+
T Consensus 126 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEE
Confidence 6543332 22356788888888877753 345566678888888888887654443333 244 88888
Q ss_pred CCCCcCccc----CchhhhhcCCCCcEeeeccc-cccc------c-cccCcccccEEEccccccccc----cChhhhhcc
Q 039925 184 LPENSFTGN----LPLEIGVTLPKGRNYYILLL-AQKL------Y-WSDVSTTATIIAMGGNQISGT----ITLGIKKLI 247 (549)
Q Consensus 184 l~~n~l~~~----~p~~~~~~l~~L~~L~l~~~-~~~l------~-~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~ 247 (549)
+++|.++.. ++..+. .+++|+.|+++++ +... . .....++|+.|++++|.++.. ++..+..+
T Consensus 206 L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~- 283 (461)
T 1z7x_W 206 LESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK- 283 (461)
T ss_dssp CTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-
T ss_pred ccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC-
Confidence 888887753 455554 7788888888773 1111 0 111245888888888888764 56666677
Q ss_pred ccCccEEEcCCCcccccCCCcCccccC-CccccCeeeccCcccccc----CCccccCCCCCCEEEccCCcccccC-----
Q 039925 248 FVNLYALTMVKNKLSGPIPHHIASSLG-NLTLLTYLALDNNKLQGN----LPSSLGYYQNLMELSVSRNKLSASL----- 317 (549)
Q Consensus 248 ~~~L~~L~L~~n~l~~~~p~~l~~~l~-~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----- 317 (549)
++|++|++++|.+++..+..+...+. ..++|++|++++|.+++. ++..+..+++|+.|++++|.+++..
T Consensus 284 -~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 284 -ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp -TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred -CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 88888888888886543211222222 236888888888888754 4566777888888888888886431
Q ss_pred -------CCC---CCCCCCCc-----ccCCcc--cccccceeeecCCC
Q 039925 318 -------PPL---NSQHNHSF-----SCPGFE--FSVIKLEFQIPGNK 348 (549)
Q Consensus 318 -------p~~---~ls~N~~~-----~ip~~~--~~~l~l~~~~~gn~ 348 (549)
+.. ++++|+++ .+|..+ +..+.. +++.+|+
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~-L~l~~N~ 409 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE-LDLSNNC 409 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE-EECCSSS
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE-EECCCCC
Confidence 111 77788766 556554 333332 5666665
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.1e-23 Score=201.90 Aligned_cols=227 Identities=13% Similarity=0.113 Sum_probs=176.6
Q ss_pred CCCCEEEccCCcceec-CCc--cccCCCCCCEeecccccccccCCccc--ccccCccceeeecccccccccc----cccC
Q 039925 57 GYLRFINLVDNNFRGE-IPE--KVGRLFRLEYLLLANNHFSGKIPANL--SHCSNLLTKLFICETHLSGQLL----DFIG 127 (549)
Q Consensus 57 ~~L~~L~L~~n~l~~~-~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~~L~Ls~n~l~~~~~----~~~~ 127 (549)
..++.|.+.++.++.. +.. .+..+++|++|++++|.+++..|..+ ..+++| ++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L-~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLAL-SSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCC-SSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCC-CEEEeecccccchhhhhHHHHhh
Confidence 4578888888777532 111 12345779999999999998888888 889999 999999999987544 3456
Q ss_pred CCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceec--c--cccccccc-cceeeCCCCcCcccCchh---hhh
Q 039925 128 NPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGL--I--PSFIFNIS-LKWNFLPENSFTGNLPLE---IGV 199 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~-L~~L~l~~n~l~~~~p~~---~~~ 199 (549)
.+++|++|+|++|.+.+..+..|..+++|++|+|++|++.+. + +..+..++ |++|++++|+++ .++.. +..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 789999999999999988888999999999999999997652 2 23346778 999999999997 33332 221
Q ss_pred cCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhcc-ccCccEEEcCCCcccccCCCcCccccCCccc
Q 039925 200 TLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLI-FVNLYALTMVKNKLSGPIPHHIASSLGNLTL 278 (549)
Q Consensus 200 ~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~ 278 (549)
.+ ++|++|++++|.+++..|..+..+. .++|++|+|++|+++ .+| ..+. ++
T Consensus 222 ~l---------------------~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp----~~~~--~~ 273 (310)
T 4glp_A 222 AG---------------------VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVP----KGLP--AK 273 (310)
T ss_dssp HT---------------------CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCC----SCCC--SC
T ss_pred cC---------------------CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chh----hhhc--CC
Confidence 22 3788899999999988777666551 159999999999998 564 3332 79
Q ss_pred cCeeeccCccccccCCccccCCCCCCEEEccCCcccc
Q 039925 279 LTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 279 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
|++|+|++|++++ +|. +..+++|+.|++++|+++.
T Consensus 274 L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 274 LRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 9999999999995 444 6788999999999999874
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=197.05 Aligned_cols=179 Identities=21% Similarity=0.194 Sum_probs=115.1
Q ss_pred cCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCC
Q 039925 126 IGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKG 204 (549)
Q Consensus 126 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L 204 (549)
+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..++ |++|++++|.+++..+..+. .+
T Consensus 59 l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l--- 132 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD-KL--- 132 (272)
T ss_dssp GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TC---
T ss_pred cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc-cC---
Confidence 3344444444444444442 1 2344444455555555444444444444444 55555555555422222222 22
Q ss_pred cEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeec
Q 039925 205 RNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLAL 284 (549)
Q Consensus 205 ~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~L 284 (549)
++|++|++++|.+++..+..+..+ ++|+.|++++|++++.. +..+..+++|++|++
T Consensus 133 ------------------~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 133 ------------------TNLTYLNLAHNQLQSLPKGVFDKL--TNLTELDLSYNQLQSLP----EGVFDKLTQLKDLRL 188 (272)
T ss_dssp ------------------TTCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCCCCC----TTTTTTCTTCCEEEC
T ss_pred ------------------CCCCEEECCCCccCccCHHHhccC--ccCCEEECCCCCcCccC----HHHhcCCccCCEEEC
Confidence 256666777777776666667788 99999999999998543 456789999999999
Q ss_pred cCccccccCCccccCCCCCCEEEccCCcccccCCCC---CCCCCC-CcccCCcc
Q 039925 285 DNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL---NSQHNH-SFSCPGFE 334 (549)
Q Consensus 285 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---~ls~N~-~~~ip~~~ 334 (549)
++|++++..+..+..+++|+.|++++|.+++..|.. +++.|. .+.+|..+
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCCCcccCcc
Confidence 999999877778899999999999999999887754 444444 45666644
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=191.55 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=94.9
Q ss_pred CCCCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCcc
Q 039925 29 DLCQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLL 108 (549)
Q Consensus 29 ~~c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 108 (549)
+||.|.|+.|.. ..++++++++.++ .+|..+. ++|+.|+|++|.+++..+..|..+++|
T Consensus 3 ~Cp~~~gC~C~~-----------------~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L- 61 (251)
T 3m19_A 3 TCETVTGCTCNE-----------------GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKL- 61 (251)
T ss_dssp -CHHHHSSEEEG-----------------GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTC-
T ss_pred cCCCCCceEcCC-----------------CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccC-
Confidence 467888988843 2346777777777 6665554 567777777777776666667777777
Q ss_pred ceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCC
Q 039925 109 TKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPEN 187 (549)
Q Consensus 109 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n 187 (549)
++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..++ |++|++++|
T Consensus 62 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 7777777777766666677777777777777777755556667777777777777777654444455555 555555555
Q ss_pred cCc
Q 039925 188 SFT 190 (549)
Q Consensus 188 ~l~ 190 (549)
.++
T Consensus 142 ~l~ 144 (251)
T 3m19_A 142 QLQ 144 (251)
T ss_dssp CCC
T ss_pred cCC
Confidence 555
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-24 Score=225.49 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=40.8
Q ss_pred cccEEEccccccccc----cChhhhhccccCccEEEcCCCcccccCCCcCccccCC-ccccCeeeccCccccc----cCC
Q 039925 224 TATIIAMGGNQISGT----ITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGN-LTLLTYLALDNNKLQG----NLP 294 (549)
Q Consensus 224 ~L~~L~l~~n~l~~~----~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~-l~~L~~L~Ls~N~l~~----~~p 294 (549)
+|+.|++++|.+++. ++..+..+ ++|+.|++++|.+++..+..+...+.. .++|++|+|++|++++ .+|
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~--~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQN--RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHC--SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhC--CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 455555555555433 23334444 555555555555543321111111211 3455555555555553 344
Q ss_pred ccccCCCCCCEEEccCCccc
Q 039925 295 SSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 295 ~~l~~l~~L~~L~Ls~N~l~ 314 (549)
..+..+++|+.|++++|+++
T Consensus 392 ~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHCCCCCEEECCSSSCC
T ss_pred HHHHhCCCccEEECCCCCCC
Confidence 44555555555555555554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-22 Score=199.03 Aligned_cols=204 Identities=15% Similarity=0.132 Sum_probs=169.1
Q ss_pred CCCCCEEEccCCcceecCCccc--cCCCCCCEeecccccccccCC----cccccccCccceeeecccccccccccccCCC
Q 039925 56 FGYLRFINLVDNNFRGEIPEKV--GRLFRLEYLLLANNHFSGKIP----ANLSHCSNLLTKLFICETHLSGQLLDFIGNP 129 (549)
Q Consensus 56 l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l 129 (549)
+++|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..+++| ++|++++|.+++..+..|+.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L-~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGL-KVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCC-CEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCC-CEEEeeCCCcchhhHHHhccC
Confidence 4679999999999999999888 899999999999999997655 345679999 999999999998888999999
Q ss_pred CCCCEEEeecceeeee--C--CccccCCCCCCEEecccCcceecccc----cccccc-cceeeCCCCcCcccCchhhhhc
Q 039925 130 SAIQVMIFKENSLEGK--F--PNTLSNLRSLFYDNINRNEFSGLIPS----FIFNIS-LKWNFLPENSFTGNLPLEIGVT 200 (549)
Q Consensus 130 ~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~-L~~L~l~~n~l~~~~p~~~~~~ 200 (549)
++|++|+|++|++.+. + +..+..+++|++|+|++|+++. ++. .+..++ |++|++++|.+++..|..+. .
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~-~ 246 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP-R 246 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS-S
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH-h
Confidence 9999999999998642 2 3345789999999999999973 232 356778 99999999999977677665 2
Q ss_pred CCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccC
Q 039925 201 LPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLT 280 (549)
Q Consensus 201 l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~ 280 (549)
+. ..++|++|++++|+++ .+|..+. ++|+.|+|++|++++ +| . +..+++|+
T Consensus 247 ~~------------------~~~~L~~L~Ls~N~l~-~lp~~~~----~~L~~L~Ls~N~l~~-~~----~-~~~l~~L~ 297 (310)
T 4glp_A 247 CM------------------WSSALNSLNLSFAGLE-QVPKGLP----AKLRVLDLSSNRLNR-AP----Q-PDELPEVD 297 (310)
T ss_dssp CC------------------CCTTCCCEECCSSCCC-SCCSCCC----SCCSCEECCSCCCCS-CC----C-TTSCCCCS
T ss_pred cc------------------CcCcCCEEECCCCCCC-chhhhhc----CCCCEEECCCCcCCC-Cc----h-hhhCCCcc
Confidence 21 1248999999999999 5666553 799999999999984 22 2 57789999
Q ss_pred eeeccCccccc
Q 039925 281 YLALDNNKLQG 291 (549)
Q Consensus 281 ~L~Ls~N~l~~ 291 (549)
.|+|++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999974
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-23 Score=209.15 Aligned_cols=217 Identities=14% Similarity=0.137 Sum_probs=132.6
Q ss_pred CCEEEccCCcceecCCccccCC--CCCCEeecccccccccCCcccccccCccceeeecccccccc-cccccCCCCCCCEE
Q 039925 59 LRFINLVDNNFRGEIPEKVGRL--FRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQ-LLDFIGNPSAIQVM 135 (549)
Q Consensus 59 L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 135 (549)
++.+++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++| ++|++++|.+++. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L-~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRV-QHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCC-CEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCC-CEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 567778777766 3455556 7788888888888754444 5567788 8888888887655 67777778888888
Q ss_pred EeecceeeeeCCccccCCCCCCEEecccC-ccee-cccccccccc-cceeeCCCC-cCccc-CchhhhhcCC-CCcEeee
Q 039925 136 IFKENSLEGKFPNTLSNLRSLFYDNINRN-EFSG-LIPSFIFNIS-LKWNFLPEN-SFTGN-LPLEIGVTLP-KGRNYYI 209 (549)
Q Consensus 136 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~p~~~~~l~-L~~L~l~~n-~l~~~-~p~~~~~~l~-~L~~L~l 209 (549)
++++|.+++..+..+..+++|++|++++| .+++ .++..+..++ |++|++++| .+++. ++..+. .++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEEe
Confidence 88888877667777777888888888887 5654 2556667777 888888888 77643 344444 555 5554444
Q ss_pred cccc---c--cc-ccccCcccccEEEccccc-cccccChhhhhccccCccEEEcCCCc-ccccCCCcCccccCCccccCe
Q 039925 210 LLLA---Q--KL-YWSDVSTTATIIAMGGNQ-ISGTITLGIKKLIFVNLYALTMVKNK-LSGPIPHHIASSLGNLTLLTY 281 (549)
Q Consensus 210 ~~~~---~--~l-~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~p~~l~~~l~~l~~L~~ 281 (549)
+++- . .+ ..+...++|+.|++++|. +++..+..+..+ ++|+.|++++|. +.... ...+..+++|++
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~ 276 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL--NYLQHLSLSRCYDIIPET----LLELGEIPTLKT 276 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC--TTCCEEECTTCTTCCGGG----GGGGGGCTTCCE
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC--CCCCEeeCCCCCCCCHHH----HHHHhcCCCCCE
Confidence 4321 0 00 011122345555555555 444444455555 555555555553 11100 113445555555
Q ss_pred eeccCc
Q 039925 282 LALDNN 287 (549)
Q Consensus 282 L~Ls~N 287 (549)
|++++|
T Consensus 277 L~l~~~ 282 (336)
T 2ast_B 277 LQVFGI 282 (336)
T ss_dssp EECTTS
T ss_pred EeccCc
Confidence 555555
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=192.20 Aligned_cols=194 Identities=19% Similarity=0.299 Sum_probs=109.4
Q ss_pred cCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCC
Q 039925 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQ 133 (549)
Q Consensus 54 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~ 133 (549)
.++++|++|++++|.++ .+| .+..+++|++|+|++|.++ .++. +..+++| ++|++++|.+++. ..+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L-~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKI-TELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSC-CEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCC-CChh-HccCCCC-CEEEccCCcCCCc--hhhcCCCCCC
Confidence 34566666666666666 344 4666666666666666666 3333 6666666 6666666666542 2455666666
Q ss_pred EEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccccceeeCCCCcCcccCchhhhhcCCCCcEeeecccc
Q 039925 134 VMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLA 213 (549)
Q Consensus 134 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~ 213 (549)
+|++++|.+++ ++. +..+++|++|++++|.+.+..+ +..++
T Consensus 111 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~----------------------------------- 151 (308)
T 1h6u_A 111 TLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLT----------------------------------- 151 (308)
T ss_dssp EEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCT-----------------------------------
T ss_pred EEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCC-----------------------------------
Confidence 66666666653 222 5556666666666665553222 44444
Q ss_pred cccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccC
Q 039925 214 QKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNL 293 (549)
Q Consensus 214 ~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~ 293 (549)
+|+.|++++|.+++..+ +..+ ++|+.|++++|.+++ + +. +..+++|++|+|++|++++.
T Consensus 152 ----------~L~~L~l~~n~l~~~~~--l~~l--~~L~~L~l~~n~l~~-~----~~-l~~l~~L~~L~L~~N~l~~~- 210 (308)
T 1h6u_A 152 ----------NLQYLSIGNAQVSDLTP--LANL--SKLTTLKADDNKISD-I----SP-LASLPNLIEVHLKNNQISDV- 210 (308)
T ss_dssp ----------TCCEEECCSSCCCCCGG--GTTC--TTCCEEECCSSCCCC-C----GG-GGGCTTCCEEECTTSCCCBC-
T ss_pred ----------CccEEEccCCcCCCChh--hcCC--CCCCEEECCCCccCc-C----hh-hcCCCCCCEEEccCCccCcc-
Confidence 34444444444443222 4445 566666666666652 2 11 55666666666666666633
Q ss_pred CccccCCCCCCEEEccCCcccc
Q 039925 294 PSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 294 p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
+ .+..+++|+.|++++|++++
T Consensus 211 ~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 211 S-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G-GGTTCTTCCEEEEEEEEEEC
T ss_pred c-cccCCCCCCEEEccCCeeec
Confidence 2 25666666666666666654
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-23 Score=209.00 Aligned_cols=236 Identities=14% Similarity=0.075 Sum_probs=182.7
Q ss_pred EEEccCCcceecCCccccCCCCCCEeecccccccccCC----ccccccc-CccceeeecccccccccccccCCC-----C
Q 039925 61 FINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIP----ANLSHCS-NLLTKLFICETHLSGQLLDFIGNP-----S 130 (549)
Q Consensus 61 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~~L~Ls~n~l~~~~~~~~~~l-----~ 130 (549)
++++++|.+++.+|..+...++|++|+|++|.+++..+ ..+..++ +| ++|+|++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L-~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASV-TSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTC-CEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCce-eEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 47899999998888888777789999999999996555 6778888 89 999999999998777776664 9
Q ss_pred CCCEEEeecceeeeeCCcc----ccCC-CCCCEEecccCcceeccccccc----c-cc-cceeeCCCCcCcccCchhhhh
Q 039925 131 AIQVMIFKENSLEGKFPNT----LSNL-RSLFYDNINRNEFSGLIPSFIF----N-IS-LKWNFLPENSFTGNLPLEIGV 199 (549)
Q Consensus 131 ~L~~L~L~~n~l~~~~p~~----~~~l-~~L~~L~L~~n~l~~~~p~~~~----~-l~-L~~L~l~~n~l~~~~p~~~~~ 199 (549)
+|++|+|++|.+++..+.. +..+ ++|++|+|++|.+++..+..+. . .+ |++|++++|.++......+..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 9999999999998665554 4444 8999999999999876665543 3 24 999999999998655544431
Q ss_pred cCCCCcEeeecccccccccccCcccccEEEccccccccccChhhh----hccccCccEEEcCCCcccccCCCcCccccCC
Q 039925 200 TLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIK----KLIFVNLYALTMVKNKLSGPIPHHIASSLGN 275 (549)
Q Consensus 200 ~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~----~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~ 275 (549)
.+. ...++|++|++++|.+++..+..+. .. .++|+.|+|++|.+++.....++..+..
T Consensus 161 ~l~-----------------~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 161 ILA-----------------AIPANVNSLNLRGNNLASKNCAELAKFLASI-PASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp HHH-----------------TSCTTCCEEECTTSCGGGSCHHHHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred HHh-----------------cCCccccEeeecCCCCchhhHHHHHHHHHhC-CCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 111 1123799999999999877665443 33 0389999999999986433334556665
Q ss_pred -ccccCeeeccCccccccCC----ccccCCCCCCEEEccCCcccc
Q 039925 276 -LTLLTYLALDNNKLQGNLP----SSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 276 -l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
.++|++|+|++|.+++..+ ..+..+++|+.|+|++|.+++
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~ 267 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN 267 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccc
Confidence 4599999999999986443 345778999999999999553
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.2e-22 Score=182.82 Aligned_cols=182 Identities=15% Similarity=0.200 Sum_probs=141.4
Q ss_pred CCCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccc
Q 039925 30 LCQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109 (549)
Q Consensus 30 ~c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 109 (549)
.|.|.+|.|+.. +++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++| +
T Consensus 6 ~C~~~~v~c~~~--~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~ 79 (208)
T 2o6s_A 6 SCSGTTVECYSQ--GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL-T 79 (208)
T ss_dssp EEETTEEECCSS--CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-C
T ss_pred EECCCEEEecCC--Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc-C
Confidence 378999999753 222 455544 4589999999999996666678899999999999999995555567889999 9
Q ss_pred eeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCc
Q 039925 110 KLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENS 188 (549)
Q Consensus 110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~ 188 (549)
+|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..++ |++|++++|.
T Consensus 80 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 999999999977777788999999999999999866666688899999999999998866666677777 8888888887
Q ss_pred CcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhc
Q 039925 189 FTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKL 246 (549)
Q Consensus 189 l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 246 (549)
+.+..| +|+.|+++.|++++.+|..+..+
T Consensus 160 ~~~~~~-----------------------------~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 160 WDCTCP-----------------------------GIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp BCCCTT-----------------------------TTHHHHHHHHHCTTTBBCTTSSB
T ss_pred eecCCC-----------------------------CHHHHHHHHHhCCceeeccCccc
Confidence 663221 45556666666666666655544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-22 Score=210.37 Aligned_cols=208 Identities=18% Similarity=0.256 Sum_probs=152.9
Q ss_pred CCCCCCCCCCCC-----CCCcc-eeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccc
Q 039925 20 VTSSWSNSIDLC-----QWRGV-TCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHF 93 (549)
Q Consensus 20 ~~~~w~~~~~~c-----~w~gv-~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 93 (549)
.+.+|..+.++| .|.|+ .|.. .+|+.|+|++|++++ +|..+. ++|++|+|++|+|
T Consensus 32 ~l~~W~~~~~~~~~~~~~~~~l~~C~~----------------~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l 92 (571)
T 3cvr_A 32 AWDKWEKQALPGENRNEAVSLLKECLI----------------NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNAL 92 (571)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHHH----------------TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCC
T ss_pred HHHHHhccCCccccccchhhhcccccc----------------CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCC
Confidence 355687666778 68888 5742 268999999999995 887663 8899999999999
Q ss_pred cccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceeccccc
Q 039925 94 SGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSF 173 (549)
Q Consensus 94 ~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 173 (549)
+ .+| ..+++| ++|++++|+|++ +|. +.+ +|++|+|++|.+++ +|. .+++|++|+|++|.+++ +|.
T Consensus 93 ~-~ip---~~l~~L-~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~- 157 (571)
T 3cvr_A 93 I-SLP---ELPASL-EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE- 157 (571)
T ss_dssp S-CCC---CCCTTC-CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-
T ss_pred c-ccc---cccCCC-CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC-
Confidence 9 788 457888 999999999987 666 655 89999999999985 666 68899999999999885 554
Q ss_pred ccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCc-
Q 039925 174 IFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNL- 251 (549)
Q Consensus 174 ~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L- 251 (549)
.++ |++|++++|.+++ +|. +. ++|+.|+|++|.|+ .+|. +. .+|
T Consensus 158 --~l~~L~~L~Ls~N~L~~-lp~-l~------------------------~~L~~L~Ls~N~L~-~lp~-~~----~~L~ 203 (571)
T 3cvr_A 158 --LPTSLEVLSVRNNQLTF-LPE-LP------------------------ESLEALDVSTNLLE-SLPA-VP----VRNH 203 (571)
T ss_dssp --CCTTCCEEECCSSCCSC-CCC-CC------------------------TTCCEEECCSSCCS-SCCC-CC--------
T ss_pred --cCCCcCEEECCCCCCCC-cch-hh------------------------CCCCEEECcCCCCC-chhh-HH----Hhhh
Confidence 455 8888888888874 554 32 26777777777777 4444 32 244
Q ss_pred ------cEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCC
Q 039925 252 ------YALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYY 300 (549)
Q Consensus 252 ------~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 300 (549)
+.|+|++|.|+ .+ |..+..+++|+.|+|++|.+++.+|..+..+
T Consensus 204 ~~~~~L~~L~Ls~N~l~-~l----p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 204 HSEETEIFFRCRENRIT-HI----PENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ----CCEEEECCSSCCC-CC----CGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred cccccceEEecCCCcce-ec----CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 77777777776 23 4555567777777777777776666665543
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=183.30 Aligned_cols=189 Identities=18% Similarity=0.196 Sum_probs=130.1
Q ss_pred cCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccc-cccccccccCCCCCCCEEEeec-ceeeeeCCcc
Q 039925 72 EIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETH-LSGQLLDFIGNPSAIQVMIFKE-NSLEGKFPNT 149 (549)
Q Consensus 72 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~ 149 (549)
.+|. +. ++|++|++++|++++..+..|..+++| ++|++++|. ++...+..|.++++|++|++++ |.+++..+..
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L-~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNI-SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTC-CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCC-cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 4555 33 367777777777774444466667777 777777775 6655555666667777777766 6666555556
Q ss_pred ccCCCCCCEEecccCcceecccccccccccceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEE
Q 039925 150 LSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIA 229 (549)
Q Consensus 150 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~ 229 (549)
|.++++|++|++++|.+++ +|. +. .+++|+ .|+.|+
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~------------------------~l~~L~------------------~L~~L~ 136 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LT------------------------KVYSTD------------------IFFILE 136 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CT------------------------TCCBCC------------------SEEEEE
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cc------------------------cccccc------------------cccEEE
Confidence 6666666666666666653 332 22 222211 244777
Q ss_pred cccc-ccccccChhhhhccccCcc-EEEcCCCcccccCCCcCccccCCccccCeeeccCcc-ccccCCccccCC-CCCCE
Q 039925 230 MGGN-QISGTITLGIKKLIFVNLY-ALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNK-LQGNLPSSLGYY-QNLME 305 (549)
Q Consensus 230 l~~n-~l~~~~~~~~~~l~~~~L~-~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~ 305 (549)
+++| .++...+..|..+ ++|+ .|++++|.++ .+| +..+.. ++|++|++++|+ +++..+..|..+ ++|+.
T Consensus 137 l~~N~~l~~i~~~~~~~l--~~L~~~L~l~~n~l~-~i~---~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 137 ITDNPYMTSIPVNAFQGL--CNETLTLKLYNNGFT-SVQ---GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209 (239)
T ss_dssp EESCTTCCEECTTTTTTT--BSSEEEEECCSCCCC-EEC---TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred CCCCcchhhcCcccccch--hcceeEEEcCCCCCc-ccC---HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence 7777 7776666677888 9999 9999999998 554 234444 899999999995 996667789999 99999
Q ss_pred EEccCCcccc
Q 039925 306 LSVSRNKLSA 315 (549)
Q Consensus 306 L~Ls~N~l~~ 315 (549)
|++++|++++
T Consensus 210 L~l~~N~l~~ 219 (239)
T 2xwt_C 210 LDVSQTSVTA 219 (239)
T ss_dssp EECTTCCCCC
T ss_pred EECCCCcccc
Confidence 9999999985
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=180.49 Aligned_cols=180 Identities=17% Similarity=0.175 Sum_probs=125.3
Q ss_pred CCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEe
Q 039925 81 FRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDN 160 (549)
Q Consensus 81 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 160 (549)
...++++++++.++ .+|..+. +.+ +.|++++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADT-EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCC-CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 34677888888887 6776654 466 7888888888777777777778888888888877766666677777777777
Q ss_pred cccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEcccccccccc
Q 039925 161 INRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTI 239 (549)
Q Consensus 161 L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~ 239 (549)
|++|.+++..+..|..++ |++|++++|.++ +..
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~----------------------------------------------~~~ 123 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLK----------------------------------------------SLP 123 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCC----------------------------------------------CCC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCC----------------------------------------------CcC
Confidence 777777755555555555 555555555544 333
Q ss_pred ChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCccccc
Q 039925 240 TLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSAS 316 (549)
Q Consensus 240 ~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 316 (549)
+..+..+ ++|+.|+|++|++++.. +..+..+++|++|+|++|++++..+..+..+++|+.|+|++|++++.
T Consensus 124 ~~~~~~l--~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 124 SGVFDRL--TKLKELRLNTNQLQSIP----AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTC--TTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred hhHhccC--CcccEEECcCCcCCccC----HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 3444555 67777777777776322 34567777888888888888765566777788888888888887753
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=180.07 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=145.2
Q ss_pred CCCCCCCCCCCCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcc
Q 039925 21 TSSWSNSIDLCQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPAN 100 (549)
Q Consensus 21 ~~~w~~~~~~c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 100 (549)
...|......|+|.+|.|+.. ++ +.+|..+. ++|++|+|++|.|++..|..|..+++|++|+|++|+|+...+..
T Consensus 9 ~~~~~~~~~~Cs~~~v~c~~~--~l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 83 (229)
T 3e6j_A 9 HSAACPSQCSCSGTTVDCRSK--RH-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV 83 (229)
T ss_dssp --CCCCTTCEEETTEEECTTS--CC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hhccCCCCCEEeCCEeEccCC--Cc-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh
Confidence 345666778999999999753 33 36676554 89999999999999888899999999999999999998544456
Q ss_pred cccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-c
Q 039925 101 LSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-L 179 (549)
Q Consensus 101 l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L 179 (549)
|..+++| ++|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++.+..+..|..++ |
T Consensus 84 ~~~l~~L-~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 84 FDSLTQL-TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161 (229)
T ss_dssp TTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCCc-CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 7899999 99999999999888888999999999999999999 8899999999999999999999977777889998 9
Q ss_pred ceeeCCCCcCcccCc
Q 039925 180 KWNFLPENSFTGNLP 194 (549)
Q Consensus 180 ~~L~l~~n~l~~~~p 194 (549)
+.|++++|.+....+
T Consensus 162 ~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 162 THAYLFGNPWDCECR 176 (229)
T ss_dssp CEEECTTSCBCTTBG
T ss_pred CEEEeeCCCccCCcc
Confidence 999999999985543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-22 Score=207.70 Aligned_cols=230 Identities=13% Similarity=0.120 Sum_probs=173.4
Q ss_pred EccCCcceecCCccccCCCCCCEeecccccccccCC----cccccccCccceeeecccc---ccccccccc-------CC
Q 039925 63 NLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIP----ANLSHCSNLLTKLFICETH---LSGQLLDFI-------GN 128 (549)
Q Consensus 63 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~~L~Ls~n~---l~~~~~~~~-------~~ 128 (549)
.++...+. .++..+..+++|++|+|++|.++...+ ..+..+++| ++|+|++|. +++.+|..+ ..
T Consensus 15 ~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L-~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~ 92 (386)
T 2ca6_A 15 AITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL-EIAEFSDIFTGRVKDEIPEALRLLLQALLK 92 (386)
T ss_dssp SCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTC-CEEECCSCCTTSCGGGSHHHHHHHHHHHTT
T ss_pred CCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCc-cEEeCcccccCccccchhHHHHHHHHHHhh
Confidence 33333444 577888899999999999999986533 447789999 999999964 444555544 78
Q ss_pred CCCCCEEEeecceeee----eCCccccCCCCCCEEecccCcceecccccc----ccc---------c-cceeeCCCCcCc
Q 039925 129 PSAIQVMIFKENSLEG----KFPNTLSNLRSLFYDNINRNEFSGLIPSFI----FNI---------S-LKWNFLPENSFT 190 (549)
Q Consensus 129 l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~----~~l---------~-L~~L~l~~n~l~ 190 (549)
+++|++|+|++|.++. .+|..+..+++|++|+|++|.+....+..+ ..+ + |++|++++|+++
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 9999999999999986 477788899999999999999875444433 333 6 999999999987
Q ss_pred c-cCchhhhhcCCCCcEeeecccccccccccCcccccEEEcccccccc-----ccChhhhhccccCccEEEcCCCccccc
Q 039925 191 G-NLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISG-----TITLGIKKLIFVNLYALTMVKNKLSGP 264 (549)
Q Consensus 191 ~-~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~~~L~~L~L~~n~l~~~ 264 (549)
. .++. +...+ ...++|+.|++++|.++. ..+..+..+ ++|+.|+|++|.++..
T Consensus 173 ~~~~~~-l~~~l------------------~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~--~~L~~L~Ls~n~l~~~ 231 (386)
T 2ca6_A 173 NGSMKE-WAKTF------------------QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC--QELKVLDLQDNTFTHL 231 (386)
T ss_dssp GGGHHH-HHHHH------------------HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC--TTCCEEECCSSCCHHH
T ss_pred cHHHHH-HHHHH------------------HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC--CCccEEECcCCCCCcH
Confidence 3 3332 11011 112378899999999873 233477788 9999999999999621
Q ss_pred CCCcCccccCCccccCeeeccCcccccc----CCcccc--CCCCCCEEEccCCcccc
Q 039925 265 IPHHIASSLGNLTLLTYLALDNNKLQGN----LPSSLG--YYQNLMELSVSRNKLSA 315 (549)
Q Consensus 265 ~p~~l~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~--~l~~L~~L~Ls~N~l~~ 315 (549)
....+|..+..+++|++|+|++|.+++. ++..+. .+++|+.|+|++|.+++
T Consensus 232 g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 1113367888999999999999999865 566664 38999999999999986
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-21 Score=194.46 Aligned_cols=237 Identities=14% Similarity=0.115 Sum_probs=186.9
Q ss_pred CccccCC--CCCCEEEccCCcceecCCccccCCCCCCEeeccccccccc-CCcccccccCccceeeeccccccccccccc
Q 039925 50 TPHVGNF--GYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGK-IPANLSHCSNLLTKLFICETHLSGQLLDFI 126 (549)
Q Consensus 50 p~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~ 126 (549)
|..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.+++. +|..+..+++| ++|++++|.+++..+..+
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L-~~L~L~~~~l~~~~~~~l 138 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL-QNLSLEGLRLSDPIVNTL 138 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCC-SEEECTTCBCCHHHHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCC-CEEeCcCcccCHHHHHHH
Confidence 3455666 8999999999999966554 66799999999999999865 78888999999 999999999988888899
Q ss_pred CCCCCCCEEEeecc-eeee-eCCccccCCCCCCEEecccC-cceec-ccccccccc--cceeeCCCC--cCc-ccCchhh
Q 039925 127 GNPSAIQVMIFKEN-SLEG-KFPNTLSNLRSLFYDNINRN-EFSGL-IPSFIFNIS--LKWNFLPEN--SFT-GNLPLEI 197 (549)
Q Consensus 127 ~~l~~L~~L~L~~n-~l~~-~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~--L~~L~l~~n--~l~-~~~p~~~ 197 (549)
+.+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ |++|++++| .++ +.++..+
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 99999999999999 6775 36677888999999999999 88754 566677665 999999999 555 3566655
Q ss_pred hhcCCCCcEeeecccc----cccccccCcccccEEEccccc-cccccChhhhhccccCccEEEcCCCcccccCCCcCccc
Q 039925 198 GVTLPKGRNYYILLLA----QKLYWSDVSTTATIIAMGGNQ-ISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASS 272 (549)
Q Consensus 198 ~~~l~~L~~L~l~~~~----~~l~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~ 272 (549)
. .+++|+.|+++++. ..+..+...++|+.|++++|. +.......+..+ ++|+.|++++| ++ ...
T Consensus 219 ~-~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~-i~-------~~~ 287 (336)
T 2ast_B 219 R-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI--PTLKTLQVFGI-VP-------DGT 287 (336)
T ss_dssp H-HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC--TTCCEEECTTS-SC-------TTC
T ss_pred h-hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC--CCCCEEeccCc-cC-------HHH
Confidence 5 89999999998832 223444555799999999995 433333367778 99999999999 44 233
Q ss_pred cCCc-cccCeeeccCccccccCCccccC
Q 039925 273 LGNL-TLLTYLALDNNKLQGNLPSSLGY 299 (549)
Q Consensus 273 l~~l-~~L~~L~Ls~N~l~~~~p~~l~~ 299 (549)
+..+ .+|..|++++|++++..|..++.
T Consensus 288 ~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 288 LQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp HHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHHHHhhCcceEEecccCccccCCcccc
Confidence 4444 34888889999999888876654
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-21 Score=188.58 Aligned_cols=148 Identities=20% Similarity=0.264 Sum_probs=108.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCC------Cc-e----------------------------------eEEEecccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE------KW-T----------------------------------AGYSEGTDF 430 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~------~~-~----------------------------------~g~~~~~~~ 430 (549)
...++|...+.||+|+||.||+|++.+ +. + +|+|.+
T Consensus 10 I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~--- 86 (299)
T 4asz_A 10 IKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE--- 86 (299)
T ss_dssp CCGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS---
T ss_pred cCHHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEee---
Confidence 345678888999999999999999753 11 1 788887
Q ss_pred CCCceEEEEEeecCCCCcccccccCC-------CCCCCCCCchhhhHHHHHHHHHHHHHhh-------------------
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSN-------NKLKPSSLSMIRKLSTTIDVASAIEYLR------------------- 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~-------~~~~~~~l~~~~~~~ia~~va~gl~yLH------------------- 484 (549)
++..++|||||++|+|.++|+... .......++|.++++|+.|||+||+|||
T Consensus 87 --~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~ 164 (299)
T 4asz_A 87 --GDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGEN 164 (299)
T ss_dssp --SSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG
T ss_pred --CCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCC
Confidence 788999999999999999997542 1123457999999999999999999999
Q ss_pred ------------------------------------------------------------c--cccCCc-----ceeeec
Q 039925 485 ------------------------------------------------------------V--KMALPE-----KVMEIV 497 (549)
Q Consensus 485 ------------------------------------------------------------~--~~~~~~-----~~~~~~ 497 (549)
. ...+.+ ....+.
T Consensus 165 ~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~ 244 (299)
T 4asz_A 165 LLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECIT 244 (299)
T ss_dssp GCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHH
T ss_pred CcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 0 000000 001111
Q ss_pred cCcccchHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhhh
Q 039925 498 ESSLLLEIEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHARENV 544 (549)
Q Consensus 498 ~~~~~~~~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~~ 544 (549)
.....+.+..|+.++.+++.+||+.+|++||||.||++.|+++.+..
T Consensus 245 ~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~ 291 (299)
T 4asz_A 245 QGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS 291 (299)
T ss_dssp HTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred cCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcC
Confidence 11122223567888999999999999999999999999999987643
|
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-21 Score=187.78 Aligned_cols=143 Identities=22% Similarity=0.331 Sum_probs=107.7
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce-----------------------------------eEEEeccccCCCceEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
..+++...+.||+|+||+||+|++.+... +|+|.. +..+
T Consensus 34 ~~~~l~l~~~iG~G~fG~Vy~~~~~~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~------~~~~ 107 (307)
T 3omv_A 34 EASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK------DNLA 107 (307)
T ss_dssp CTTSCCEEEECCCCSSSEEEEEESSSEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS------SSCE
T ss_pred cHHHeEEeeEEeeCCCcEEEEEEECCcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC------CeEE
Confidence 45678888899999999999999865422 677754 5679
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh---------------------------------
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR--------------------------------- 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH--------------------------------- 484 (549)
+|||||++|+|.++|+... ..++|.++++|+.|||+||+|||
T Consensus 108 iVmEy~~gGsL~~~l~~~~-----~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 182 (307)
T 3omv_A 108 IVTQWCEGSSLYKHLHVQE-----TKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVK 182 (307)
T ss_dssp EEEECCSSCBHHHHHHTSC-----CCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC-
T ss_pred EEEEcCCCCCHHHHHhhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceec
Confidence 9999999999999998654 46999999999999999999999
Q ss_pred --------------------------------------------------ccccCCc-----ceeeec-----cCcccch
Q 039925 485 --------------------------------------------------VKMALPE-----KVMEIV-----ESSLLLE 504 (549)
Q Consensus 485 --------------------------------------------------~~~~~~~-----~~~~~~-----~~~~~~~ 504 (549)
....+.+ .+..++ .+.+...
T Consensus 183 ~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~ 262 (307)
T 3omv_A 183 SRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKL 262 (307)
T ss_dssp -----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTS
T ss_pred ccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccc
Confidence 0000000 000000 0111111
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhhhhc
Q 039925 505 IEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHARENVAC 546 (549)
Q Consensus 505 ~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~~~~ 546 (549)
+.+|+.++.+++.+||+.+|++||||.||++.|+.++..++.
T Consensus 263 ~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lpk 304 (307)
T 3omv_A 263 YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp CTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred cccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCCC
Confidence 245778899999999999999999999999999999876653
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-21 Score=189.29 Aligned_cols=142 Identities=23% Similarity=0.248 Sum_probs=104.5
Q ss_pred cccCcCCCccccCceecEEEEEeCC------Cc-e-----------------------------------eEEEeccccC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE------KW-T-----------------------------------AGYSEGTDFK 431 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~------~~-~-----------------------------------~g~~~~~~~~ 431 (549)
.+++...+.||+|+||.||+|++.+ +. | +|+|..
T Consensus 25 ~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~---- 100 (308)
T 4gt4_A 25 LSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTK---- 100 (308)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred HHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEE----
Confidence 3445566789999999999999843 11 1 788887
Q ss_pred CCceEEEEEeecCCCCcccccccCCCC----------CCCCCCchhhhHHHHHHHHHHHHHhh-----------------
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNK----------LKPSSLSMIRKLSTTIDVASAIEYLR----------------- 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~----------~~~~~l~~~~~~~ia~~va~gl~yLH----------------- 484 (549)
.+..++|||||++|+|.++|+..... .....++|.++++|+.|||+||+|||
T Consensus 101 -~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~ 179 (308)
T 4gt4_A 101 -DQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVY 179 (308)
T ss_dssp -SSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC
T ss_pred -CCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEC
Confidence 78899999999999999999754310 01246899999999999999999999
Q ss_pred --------------------------------------------------------------c--cccCCc----c-eee
Q 039925 485 --------------------------------------------------------------V--KMALPE----K-VME 495 (549)
Q Consensus 485 --------------------------------------------------------------~--~~~~~~----~-~~~ 495 (549)
. ...+.+ . ...
T Consensus 180 ~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~ 259 (308)
T 4gt4_A 180 DKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEM 259 (308)
T ss_dssp GGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHH
T ss_pred CCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 0 000110 0 111
Q ss_pred eccCcccchHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 039925 496 IVESSLLLEIEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHA 540 (549)
Q Consensus 496 ~~~~~~~~~~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~ 540 (549)
+.+....+.+.+|+.++.+++.+||+.+|++||+|.||++.|+.+
T Consensus 260 i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 260 IRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHcCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 111122223367888999999999999999999999999999865
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=181.82 Aligned_cols=225 Identities=18% Similarity=0.143 Sum_probs=168.5
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccc-cccCCCCCCCE-EEe
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLL-DFIGNPSAIQV-MIF 137 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~L 137 (549)
++++-++++++ .+|..+ .+++++|+|++|+|+...+..|.++++| ++|+|++|++.+.+| ..|.++++|++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L-~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDL-EKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTC-CEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCC-CEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46778888998 888776 3689999999999994334578999999 999999999876555 57899998875 667
Q ss_pred ecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCC-CcCcccCchhhhhcCCCCcEeeecccccc
Q 039925 138 KENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPE-NSFTGNLPLEIGVTLPKGRNYYILLLAQK 215 (549)
Q Consensus 138 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~-n~l~~~~p~~~~~~l~~L~~L~l~~~~~~ 215 (549)
+.|+++...|..|..+++|++|++++|++....+..+.... +..|++.+ +.+. .++...+.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~---------------- 150 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFV---------------- 150 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSST----------------
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchh----------------
Confidence 78999988889999999999999999999866665665555 88888865 4555 45543221
Q ss_pred cccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCc
Q 039925 216 LYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPS 295 (549)
Q Consensus 216 l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~ 295 (549)
.....++.|++++|+++.. +...... .+|+.|++++|+..+.+| +..|..+++|++|+|++|+|+ .+|.
T Consensus 151 ----~~~~~l~~L~L~~N~i~~i-~~~~f~~--~~L~~l~l~~~n~l~~i~---~~~f~~l~~L~~LdLs~N~l~-~lp~ 219 (350)
T 4ay9_X 151 ----GLSFESVILWLNKNGIQEI-HNSAFNG--TQLDELNLSDNNNLEELP---NDVFHGASGPVILDISRTRIH-SLPS 219 (350)
T ss_dssp ----TSBSSCEEEECCSSCCCEE-CTTSSTT--EEEEEEECTTCTTCCCCC---TTTTTTEECCSEEECTTSCCC-CCCS
T ss_pred ----hcchhhhhhccccccccCC-Chhhccc--cchhHHhhccCCcccCCC---HHHhccCcccchhhcCCCCcC-ccCh
Confidence 1223688899999999854 4444445 689999998644444665 467899999999999999999 5654
Q ss_pred cccCCCCCCEEEccCCcccccCC
Q 039925 296 SLGYYQNLMELSVSRNKLSASLP 318 (549)
Q Consensus 296 ~l~~l~~L~~L~Ls~N~l~~~~p 318 (549)
. .+.+|+.|.+.++.--..+|
T Consensus 220 ~--~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 220 Y--GLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp S--SCTTCCEEECTTCTTCCCCC
T ss_pred h--hhccchHhhhccCCCcCcCC
Confidence 2 35667777765544333344
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-21 Score=188.02 Aligned_cols=147 Identities=21% Similarity=0.309 Sum_probs=109.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCC------Cc-e----------------------------------eEEEecccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE------KW-T----------------------------------AGYSEGTDF 430 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~------~~-~----------------------------------~g~~~~~~~ 430 (549)
...++|...+.||+|+||.||+|++++ +. + +|+|.+
T Consensus 38 i~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~--- 114 (329)
T 4aoj_A 38 IKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTE--- 114 (329)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS---
T ss_pred cCHHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE---
Confidence 345678888899999999999999853 21 1 788887
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCC---------CCCCCCchhhhHHHHHHHHHHHHHhh-----------------
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNK---------LKPSSLSMIRKLSTTIDVASAIEYLR----------------- 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~---------~~~~~l~~~~~~~ia~~va~gl~yLH----------------- 484 (549)
.+..++|||||++|+|.++|+..... ....+++|.++++|+.|||+||+|||
T Consensus 115 --~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~ 192 (329)
T 4aoj_A 115 --GRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVG 192 (329)
T ss_dssp --SSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEE
T ss_pred --CCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEEC
Confidence 78899999999999999999865310 12356999999999999999999999
Q ss_pred -------------------------------ccccCCc------------------ceeeec------------------
Q 039925 485 -------------------------------VKMALPE------------------KVMEIV------------------ 497 (549)
Q Consensus 485 -------------------------------~~~~~~~------------------~~~~~~------------------ 497 (549)
...+.|+ .+.+++
T Consensus 193 ~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~ 272 (329)
T 4aoj_A 193 QGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDC 272 (329)
T ss_dssp TTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHH
T ss_pred CCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHH
Confidence 0000000 001111
Q ss_pred --cCcccchHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhh
Q 039925 498 --ESSLLLEIEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHAREN 543 (549)
Q Consensus 498 --~~~~~~~~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~ 543 (549)
.....+.+..|+.++.+++.+||+.+|++||||.||++.|+.+.+.
T Consensus 273 i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 273 ITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp HHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred HHcCCCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence 1111122356778899999999999999999999999999998753
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-20 Score=172.30 Aligned_cols=155 Identities=15% Similarity=0.227 Sum_probs=139.4
Q ss_pred CCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccce
Q 039925 31 CQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110 (549)
Q Consensus 31 c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~ 110 (549)
|.|..|.|+.. +++ .+|..+. ++|+.|+|++|.|++..+..|..+++|++|+|++|+|++..|..|..+++| ++
T Consensus 11 C~~~~v~c~~~--~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-~~ 84 (220)
T 2v9t_B 11 CSNNIVDCRGK--GLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-NS 84 (220)
T ss_dssp EETTEEECTTS--CCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-CE
T ss_pred ECCCEEEcCCC--CcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-CE
Confidence 68999999753 333 5676654 689999999999997777799999999999999999998889999999999 99
Q ss_pred eeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcC
Q 039925 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSF 189 (549)
Q Consensus 111 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l 189 (549)
|+|++|.++...+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..|..++ |++|++++|.+
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 99999999977777899999999999999999988889999999999999999999988888899998 99999999998
Q ss_pred cc
Q 039925 190 TG 191 (549)
Q Consensus 190 ~~ 191 (549)
..
T Consensus 165 ~c 166 (220)
T 2v9t_B 165 IC 166 (220)
T ss_dssp EC
T ss_pred CC
Confidence 74
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=167.50 Aligned_cols=158 Identities=16% Similarity=0.255 Sum_probs=139.9
Q ss_pred CCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCC-ccccCCCCCCEeecccccccccCCcccccccCccc
Q 039925 31 CQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIP-EKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109 (549)
Q Consensus 31 c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 109 (549)
|.|..+.|+.. +++ .+|..+. +.+++|+|++|.|++..| ..|..+++|++|+|++|+|++..+..|..+++| +
T Consensus 11 C~~~~l~~s~n--~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~ 84 (220)
T 2v70_A 11 CEGTTVDCSNQ--KLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV-N 84 (220)
T ss_dssp EETTEEECCSS--CCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-C
T ss_pred ECCCEeEeCCC--Ccc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-C
Confidence 68999999753 333 5777664 457899999999997655 468999999999999999997777789999999 9
Q ss_pred eeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCc
Q 039925 110 KLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENS 188 (549)
Q Consensus 110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~ 188 (549)
+|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..|..++ |+.|++++|.
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 999999999988888999999999999999999988899999999999999999999988899999999 9999999999
Q ss_pred CcccCc
Q 039925 189 FTGNLP 194 (549)
Q Consensus 189 l~~~~p 194 (549)
+....+
T Consensus 165 l~c~c~ 170 (220)
T 2v70_A 165 FNCNCY 170 (220)
T ss_dssp EECSGG
T ss_pred CcCCCc
Confidence 986554
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=166.28 Aligned_cols=127 Identities=16% Similarity=0.183 Sum_probs=77.7
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeec
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKE 139 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (549)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..+..+++| ++|++++|++++..+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSL-TQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-SEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccC-cEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 45666777666 555443 3467777777777774444456667777 7777777777655555666677777777777
Q ss_pred ceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCc
Q 039925 140 NSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFT 190 (549)
Q Consensus 140 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~ 190 (549)
|.+++..+..|..+++|++|++++|++.+..+..+..++ |++|++++|.++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 776644444556666666666666666644444444444 444444444444
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-19 Score=173.40 Aligned_cols=131 Identities=21% Similarity=0.294 Sum_probs=110.9
Q ss_pred ecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccC
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIG 127 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~ 127 (549)
.+| .+..+++|++|+|++|.++ .++. +..+++|++|+|++|.+++ ++ .+..+++| ++|++++|.+++.. .+.
T Consensus 55 ~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L-~~L~l~~n~l~~~~--~l~ 126 (308)
T 1h6u_A 55 TIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSI-KTLDLTSTQITDVT--PLA 126 (308)
T ss_dssp CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTC-CEEECTTSCCCCCG--GGT
T ss_pred Cch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCC-CEEECCCCCCCCch--hhc
Confidence 355 6889999999999999999 4555 9999999999999999984 44 68999999 99999999998643 389
Q ss_pred CCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCc
Q 039925 128 NPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFT 190 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~ 190 (549)
.+++|++|++++|.+++. +. +..+++|++|++++|.+++..+ +..++ |+.|++++|.++
T Consensus 127 ~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 127 GLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp TCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 999999999999999854 43 8899999999999999985433 66666 777777777776
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-19 Score=178.02 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=67.7
Q ss_pred ccCcCCCccccCceecEEEEEeCCCce---------------------------------eEEEeccccCCCceEEEEEe
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------AGYSEGTDFKGIDFKAVVFD 441 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------~g~~~~~~~~~~~~~~lv~e 441 (549)
.++...+.||+|+||.||+|++.+..+ +|+|...+ ......+||||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~-~~~~~~~lV~E 81 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQLWLVSD 81 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecC-CCceEEEEEec
Confidence 356778899999999999999976555 67776511 01135799999
Q ss_pred ecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 442 YMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 442 y~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||++|+|.++|+.. .++|..+++++.|+|+||+|||
T Consensus 82 y~~~gsL~~~l~~~-------~l~~~~~~~i~~~ia~gl~ylH 117 (303)
T 3hmm_A 82 YHEHGSLFDYLNRY-------TVTVEGMIKLALSTASGLAHLH 117 (303)
T ss_dssp CCTTCBHHHHHHHC-------CBCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999864 4899999999999999999998
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-19 Score=177.68 Aligned_cols=181 Identities=21% Similarity=0.252 Sum_probs=148.0
Q ss_pred CCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCcccc-CCCCCCEeecccccccccCCcccccccCccc
Q 039925 31 CQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVG-RLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109 (549)
Q Consensus 31 c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 109 (549)
|.+..+.|... +++ .+|..+. +.++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|..+++| +
T Consensus 18 C~~~~l~c~~~--~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~ 91 (361)
T 2xot_A 18 CASNILSCSKQ--QLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL-R 91 (361)
T ss_dssp EETTEEECCSS--CCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC-C
T ss_pred ECCCEEEeCCC--CcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC-C
Confidence 57888888653 333 5676654 4689999999999977777787 99999999999999997777789999999 9
Q ss_pred eeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccc---cccc-cceeeCC
Q 039925 110 KLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFI---FNIS-LKWNFLP 185 (549)
Q Consensus 110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~---~~l~-L~~L~l~ 185 (549)
+|+|++|+++...+..|..+++|++|+|++|.++...|..|..+++|++|+|++|+++...+..| ..++ |+.|+|+
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 99999999998888899999999999999999998889999999999999999999996555555 5677 9999999
Q ss_pred CCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEcccccccc
Q 039925 186 ENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISG 237 (549)
Q Consensus 186 ~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~ 237 (549)
+|+++ .+|......++++ .++.|++++|.+.-
T Consensus 172 ~N~l~-~l~~~~~~~l~~~-------------------~l~~l~l~~N~~~C 203 (361)
T 2xot_A 172 SNKLK-KLPLTDLQKLPAW-------------------VKNGLYLHNNPLEC 203 (361)
T ss_dssp SSCCC-CCCHHHHHHSCHH-------------------HHTTEECCSSCEEC
T ss_pred CCCCC-ccCHHHhhhccHh-------------------hcceEEecCCCccC
Confidence 99999 5554433233321 24678888888763
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-20 Score=201.84 Aligned_cols=185 Identities=18% Similarity=0.131 Sum_probs=107.8
Q ss_pred hhHHHHHHHHhhcCCC-CCCCCCCCC-CCCCCCCCcceeCCCCCceE---------eecCccccCCCCCCEEEccCCcce
Q 039925 2 TDHLALLAIKSLLHDR-RGVTSSWSN-SIDLCQWRGVTCTHQHQRIN---------KCLTPHVGNFGYLRFINLVDNNFR 70 (549)
Q Consensus 2 ~~~~~l~~~~~~~~~~-~~~~~~w~~-~~~~c~w~gv~c~~~~~~v~---------g~lp~~~~~l~~L~~L~L~~n~l~ 70 (549)
.++++|+++..++... ...-..|.. ....+.|.++.++.. +++ ..+|..+ |+.++|+.|.|.
T Consensus 132 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~l~L~~n~~~~~~~~~-----l~~l~Ls~~~i~ 204 (727)
T 4b8c_D 132 CTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTP--LTPKIELFANGKDEANQAL-----LQHKKLSQYSID 204 (727)
T ss_dssp CCCHHHHHHHHHHHHHHTTC------------------------------------------------------------
T ss_pred cchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecCC--ccceEEeeCCCCCcchhhH-----hhcCccCccccc
Confidence 3568888888776421 123345633 335677887776542 111 1122222 333444444333
Q ss_pred e---------cCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecce
Q 039925 71 G---------EIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENS 141 (549)
Q Consensus 71 ~---------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 141 (549)
+ ..|+.|..+++|+.|+|++|.+. .+|..++.+++| ++|+|++|.|+ .+|..|+++++|++|+|++|.
T Consensus 205 ~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 205 EDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL-TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC-SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred CccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC-CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 2 45677888888888888888888 788888888888 88888888888 777888888888888888888
Q ss_pred eeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhh
Q 039925 142 LEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIG 198 (549)
Q Consensus 142 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~ 198 (549)
|+ .+|..|+.+++|++|+|++|.++ .+|..|..++ |++|+|++|.+++.+|..+.
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 88 77888888888888888888886 6777788888 88888888888877776664
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=175.05 Aligned_cols=178 Identities=15% Similarity=0.158 Sum_probs=147.4
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccc-cccCccceeeecccccccccccccCCCCCCCEEEee
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLS-HCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFK 138 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 138 (549)
++++++++.++ .+|..+. +.++.|+|++|+|++..+..+. .+++| ++|+|++|+|++..+..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L-~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNL-HSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhccccc-CEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 57899999999 6887664 4689999999999966666676 89999 999999999998888899999999999999
Q ss_pred cceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccc
Q 039925 139 ENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLY 217 (549)
Q Consensus 139 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~ 217 (549)
+|+++...+..|..+++|++|+|++|++.+..|..|..++ |++|+|++|.++ .+|..++..+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~--------------- 160 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGN--------------- 160 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC------------------
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcc---------------
Confidence 9999987778899999999999999999988889999999 999999999998 56665431111
Q ss_pred cccCcccccEEEccccccccccChhhhhccccC--ccEEEcCCCccc
Q 039925 218 WSDVSTTATIIAMGGNQISGTITLGIKKLIFVN--LYALTMVKNKLS 262 (549)
Q Consensus 218 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~--L~~L~L~~n~l~ 262 (549)
..++|+.|+|++|.++...+..+..+ +. ++.|+|++|.+.
T Consensus 161 ---~l~~L~~L~L~~N~l~~l~~~~~~~l--~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 161 ---KLPKLMLLDLSSNKLKKLPLTDLQKL--PAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ----CTTCCEEECCSSCCCCCCHHHHHHS--CHHHHTTEECCSSCEE
T ss_pred ---cCCcCCEEECCCCCCCccCHHHhhhc--cHhhcceEEecCCCcc
Confidence 12367888888888886655667766 55 477888888776
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-20 Score=198.75 Aligned_cols=253 Identities=10% Similarity=0.033 Sum_probs=122.9
Q ss_pred cCCCCCCEEEccCCcceec----CCccccCCCCCCEeeccccccc----ccCCcccccccCccceeeecccccccccccc
Q 039925 54 GNFGYLRFINLVDNNFRGE----IPEKVGRLFRLEYLLLANNHFS----GKIPANLSHCSNLLTKLFICETHLSGQLLDF 125 (549)
Q Consensus 54 ~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~ 125 (549)
.++++|++|+|++|.+++. ++..+..+++|++|++++|.++ +.++..+..+++| ++|++++|.+.+ ++..
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L-~~L~L~~~~~~~-l~~~ 238 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL-VSVKVGDFEILE-LVGF 238 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC-CEEECSSCBGGG-GHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC-cEEeccCccHHH-HHHH
Confidence 3567777777777776544 3334455667777777777665 2333344556666 777777666543 2233
Q ss_pred cCCCCCCCEEEeeccee--------------------------eeeCCccccCCCCCCEEecccCcceeccc-cccc---
Q 039925 126 IGNPSAIQVMIFKENSL--------------------------EGKFPNTLSNLRSLFYDNINRNEFSGLIP-SFIF--- 175 (549)
Q Consensus 126 ~~~l~~L~~L~L~~n~l--------------------------~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~--- 175 (549)
+..+++|++|+++.+.. ...+|..+..+++|++|++++|.+++... ..+.
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 33333333333321100 01223334444555555555555432211 1122
Q ss_pred ---------------------ccc-cceeeCC-----------CCcCcccCchhhhhcCCCCcEeeecc-cccc--cccc
Q 039925 176 ---------------------NIS-LKWNFLP-----------ENSFTGNLPLEIGVTLPKGRNYYILL-LAQK--LYWS 219 (549)
Q Consensus 176 ---------------------~l~-L~~L~l~-----------~n~l~~~~p~~~~~~l~~L~~L~l~~-~~~~--l~~l 219 (549)
.++ |++|+++ .|.+++.....+...+++|++|++.. .+.. +..+
T Consensus 319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 333 5555554 23333222222222455555555522 1110 0011
Q ss_pred -cCcccccEEEcc----ccccccc-----cChhhhhccccCccEEEcCCCc--ccccCCCcCcccc-CCccccCeeeccC
Q 039925 220 -DVSTTATIIAMG----GNQISGT-----ITLGIKKLIFVNLYALTMVKNK--LSGPIPHHIASSL-GNLTLLTYLALDN 286 (549)
Q Consensus 220 -~~~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~~~L~~L~L~~n~--l~~~~p~~l~~~l-~~l~~L~~L~Ls~ 286 (549)
...++|+.|+++ .|.+++. ++..+..+ ++|+.|+++.|. +++.. +..+ ..+++|++|+|++
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~--~~L~~L~L~~~~~~l~~~~----~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC--KKLRRFAFYLRQGGLTDLG----LSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC--TTCCEEEEECCGGGCCHHH----HHHHHHSCTTCCEEEECS
T ss_pred HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC--CCCCEEEEecCCCCccHHH----HHHHHHhCccceEeeccC
Confidence 113466677664 4555542 22334555 667777775432 44322 1122 2356677777777
Q ss_pred cccccc-CCccccCCCCCCEEEccCCccc
Q 039925 287 NKLQGN-LPSSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 287 N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~ 314 (549)
|++++. ++..+..+++|+.|++++|.++
T Consensus 473 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred CCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 776642 3444456677777777777665
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-19 Score=179.61 Aligned_cols=148 Identities=15% Similarity=0.174 Sum_probs=107.2
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-------e------------------------------------eEEEecc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-------T------------------------------------AGYSEGT 428 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-------~------------------------------------~g~~~~~ 428 (549)
...++|...+.||+|+||.||+|++.+.. + +|+|...
T Consensus 61 i~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~ 140 (353)
T 4ase_A 61 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKP 140 (353)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCT
T ss_pred ecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEec
Confidence 34678888999999999999999875421 1 6777651
Q ss_pred ccCCCceEEEEEeecCCCCcccccccCCCC----------CCCCCCchhhhHHHHHHHHHHHHHhh--------------
Q 039925 429 DFKGIDFKAVVFDYMQNRSLEDWPYQSNNK----------LKPSSLSMIRKLSTTIDVASAIEYLR-------------- 484 (549)
Q Consensus 429 ~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~----------~~~~~l~~~~~~~ia~~va~gl~yLH-------------- 484 (549)
....++|||||++|+|.++|+..... .....++|.+++.|+.|||+||+|||
T Consensus 141 ----~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NI 216 (353)
T 4ase_A 141 ----GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNI 216 (353)
T ss_dssp ----TSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred ----CCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCccce
Confidence 35689999999999999999754310 11346899999999999999999999
Q ss_pred -----------------------------------------------------------------c--cccCCc-----c
Q 039925 485 -----------------------------------------------------------------V--KMALPE-----K 492 (549)
Q Consensus 485 -----------------------------------------------------------------~--~~~~~~-----~ 492 (549)
. ...+++ .
T Consensus 217 Ll~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~ 296 (353)
T 4ase_A 217 LLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 296 (353)
T ss_dssp EECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH
T ss_pred eeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHH
Confidence 0 000111 0
Q ss_pred eeeeccCc-ccchHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhh
Q 039925 493 VMEIVESS-LLLEIEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHAREN 543 (549)
Q Consensus 493 ~~~~~~~~-~~~~~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~ 543 (549)
+...+..+ .+..+..++.++.+++.+||+.||++||||.||++.|+.+.+.
T Consensus 297 ~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 297 FCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp HHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHH
Confidence 01111111 1112245778899999999999999999999999999988654
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=166.99 Aligned_cols=172 Identities=21% Similarity=0.334 Sum_probs=90.8
Q ss_pred cCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCC
Q 039925 78 GRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLF 157 (549)
Q Consensus 78 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 157 (549)
..+++|++|++++|.+. .++ .+..+++| ++|++++|++++..+ +..+++|++|++++|.+++ ++ .+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L-~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQ-GIQYLPNV-TKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCTTC-CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hhcCcccEEEccCCCcc-cCh-hHhcCCCC-CEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 34555555555555555 233 25555555 555555555554333 5555555555555555552 22 255555555
Q ss_pred EEecccCcceecccccccccccceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEcccccccc
Q 039925 158 YDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISG 237 (549)
Q Consensus 158 ~L~L~~n~l~~~~p~~~~~l~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~ 237 (549)
+|++++|.+.+. ..+..++ +|+.|++++|.+++
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~---------------------------------------------~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLP---------------------------------------------QLESLYLGNNKITD 148 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCT---------------------------------------------TCCEEECCSSCCCC
T ss_pred EEECCCCcCCCC--hhhcCCC---------------------------------------------CCCEEEccCCcCCc
Confidence 555555555431 2233333 34444444444443
Q ss_pred ccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccc
Q 039925 238 TITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 238 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
. ..+..+ ++|+.|++++|.+++.. . +..+++|++|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 149 ~--~~l~~l--~~L~~L~L~~N~l~~~~-----~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 149 I--TVLSRL--TKLDTLSLEDNQISDIV-----P-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp C--GGGGGC--TTCSEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred c--hhhccC--CCCCEEEccCCccccch-----h-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 2 334445 66666666666665321 2 5566666666666666663 33 36666666666666666653
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=167.10 Aligned_cols=127 Identities=17% Similarity=0.260 Sum_probs=107.5
Q ss_pred ccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCC
Q 039925 53 VGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAI 132 (549)
Q Consensus 53 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L 132 (549)
+..+++|+.|++++|.++ .++ .+..+++|++|+|++|++++ ++. +..+++| ++|++++|.+++. + .+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L-~~L~l~~n~l~~~-~-~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNL-GWLFLDENKVKDL-S-SLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTC-CEEECCSSCCCCG-G-GGTTCTTC
T ss_pred hhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCC-CEEECCCCcCCCC-h-hhccCCCC
Confidence 457889999999999998 555 48899999999999999995 554 8999999 9999999999863 3 49999999
Q ss_pred CEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCc
Q 039925 133 QVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFT 190 (549)
Q Consensus 133 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~ 190 (549)
++|++++|.+++ + ..+..+++|++|++++|.+++. ..+..++ |++|++++|.++
T Consensus 115 ~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 115 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 999999999985 3 5788999999999999999854 4566666 777777777766
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-18 Score=181.59 Aligned_cols=172 Identities=18% Similarity=0.272 Sum_probs=111.6
Q ss_pred ccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCC
Q 039925 53 VGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAI 132 (549)
Q Consensus 53 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L 132 (549)
+..+++|+.|++++|.+. .+| .|..+++|+.|+|++|.+++ ++. +..+++| +.|+|++|.+.+. ..+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNL-GWLFLDENKIKDL--SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTC-CEEECCSSCCCCC--TTSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCC-CEEECcCCCCCCC--hhhccCCCC
Confidence 445667777777777776 444 46777777777777777774 333 6777777 7777777777642 256777777
Q ss_pred CEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecc
Q 039925 133 QVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILL 211 (549)
Q Consensus 133 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~ 211 (549)
++|+|++|.+.+ + ..+..+++|+.|+|++|.+.+. ..+..++ |+.|+|++|.+++..| +. .+
T Consensus 112 ~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~-~l---------- 174 (605)
T 1m9s_A 112 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA-GL---------- 174 (605)
T ss_dssp CEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GT-TC----------
T ss_pred CEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hc-cC----------
Confidence 777777777763 2 3467777777777777777643 4566666 7777777777764333 22 22
Q ss_pred cccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccc
Q 039925 212 LAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSG 263 (549)
Q Consensus 212 ~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 263 (549)
++|+.|+|++|.+++. ..+..+ ++|+.|+|++|.+.+
T Consensus 175 -----------~~L~~L~Ls~N~i~~l--~~l~~l--~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 175 -----------TKLQNLYLSKNHISDL--RALAGL--KNLDVLELFSQECLN 211 (605)
T ss_dssp -----------TTCCEEECCSSCCCBC--GGGTTC--TTCSEEECCSEEEEC
T ss_pred -----------CCCCEEECcCCCCCCC--hHHccC--CCCCEEEccCCcCcC
Confidence 2455666666666543 245555 666666666666653
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-18 Score=181.06 Aligned_cols=193 Identities=21% Similarity=0.279 Sum_probs=153.5
Q ss_pred CcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeee
Q 039925 34 RGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFI 113 (549)
Q Consensus 34 ~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~L 113 (549)
..+.++. .++++ +|..+. ++|++|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. +.. +| ++|++
T Consensus 62 ~~L~Ls~--n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L-~~L~L 127 (571)
T 3cvr_A 62 SELQLNR--LNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SL-KHLDV 127 (571)
T ss_dssp SEEECCS--SCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TC-CEEEC
T ss_pred cEEEeCC--CCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CC-CEEEC
Confidence 3455543 34554 887663 89999999999999 788 457999999999999995 887 665 88 99999
Q ss_pred cccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCccc
Q 039925 114 CETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGN 192 (549)
Q Consensus 114 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~ 192 (549)
++|.+++ +|. .+++|++|+|++|.+++ +|. .+++|++|+|++|.+++ +|. |. + |++|++++|.++ .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 9999997 555 68999999999999995 676 67899999999999996 666 55 6 999999999999 7
Q ss_pred CchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccc
Q 039925 193 LPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASS 272 (549)
Q Consensus 193 ~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~ 272 (549)
+|. +.. +|. ...+.|+.|+|++|.|+ .+|..+..+ ++|+.|+|++|.+++.+ |..
T Consensus 195 lp~-~~~---~L~--------------~~~~~L~~L~Ls~N~l~-~lp~~l~~l--~~L~~L~L~~N~l~~~~----p~~ 249 (571)
T 3cvr_A 195 LPA-VPV---RNH--------------HSEETEIFFRCRENRIT-HIPENILSL--DPTCTIILEDNPLSSRI----RES 249 (571)
T ss_dssp CCC-CC-------------------------CCEEEECCSSCCC-CCCGGGGGS--CTTEEEECCSSSCCHHH----HHH
T ss_pred hhh-HHH---hhh--------------cccccceEEecCCCcce-ecCHHHhcC--CCCCEEEeeCCcCCCcC----HHH
Confidence 776 441 110 11224599999999999 578888888 99999999999999876 455
Q ss_pred cCCccc
Q 039925 273 LGNLTL 278 (549)
Q Consensus 273 l~~l~~ 278 (549)
+..++.
T Consensus 250 l~~l~~ 255 (571)
T 3cvr_A 250 LSQQTA 255 (571)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 555443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-18 Score=181.99 Aligned_cols=191 Identities=20% Similarity=0.293 Sum_probs=146.8
Q ss_pred CCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEE
Q 039925 57 GYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMI 136 (549)
Q Consensus 57 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 136 (549)
..+..+.+..+.+....+ +..+++|+.|++++|.+. .+| .+..+++| +.|+|++|.+++..+ +..+++|+.|+
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L-~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNV-TKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTC-CEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCC-CEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 345556666676664433 567889999999999998 455 58889999 999999999987655 88899999999
Q ss_pred eecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccc
Q 039925 137 FKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQK 215 (549)
Q Consensus 137 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~ 215 (549)
|++|.+.+ +| .+..+++|++|+|++|.+.+. ..+..++ |+.|+|++|.+++ + ..+. .
T Consensus 94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~-~--------------- 151 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLS-R--------------- 151 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC-C-GGGG-S---------------
T ss_pred CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC-c-hhhc-c---------------
Confidence 99999984 44 688899999999999998853 4577778 8999999888874 2 2222 2
Q ss_pred cccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCcccccc
Q 039925 216 LYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGN 292 (549)
Q Consensus 216 l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~ 292 (549)
+++|+.|+|++|.+.+..| +..+ ++|+.|+|++|.+++ + ..+..+++|+.|+|++|.+.+.
T Consensus 152 ------l~~L~~L~Ls~N~l~~~~~--l~~l--~~L~~L~Ls~N~i~~-l-----~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 152 ------LTKLDTLSLEDNQISDIVP--LAGL--TKLQNLYLSKNHISD-L-----RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ------CTTCSEEECCSSCCCCCGG--GTTC--TTCCEEECCSSCCCB-C-----GGGTTCTTCSEEECCSEEEECC
T ss_pred ------cCCCCEEECcCCcCCCchh--hccC--CCCCEEECcCCCCCC-C-----hHHccCCCCCEEEccCCcCcCC
Confidence 2367788888888886655 7777 888888888888874 2 2477888888888888888743
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=155.26 Aligned_cols=152 Identities=14% Similarity=0.149 Sum_probs=131.2
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeec
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKE 139 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (549)
+.++++++.++ .+|..+. ++|+.|+|++|+|++..+..|..+++| ++|+|++|++++..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L-~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKL-RRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTC-CEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCC-CEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 47889999998 7887665 789999999999997666789999999 9999999999988899999999999999999
Q ss_pred ceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeeccccccccc
Q 039925 140 NSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYW 218 (549)
Q Consensus 140 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~ 218 (549)
|.++...+..|..+++|++|+|++|++.+..|..|..++ |++|++++|.+++..+..+. .++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~---------------- 152 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS-PLR---------------- 152 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCT----------------
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh-CCC----------------
Confidence 999965556688999999999999999988899999999 99999999999954443343 333
Q ss_pred ccCcccccEEEcccccccc
Q 039925 219 SDVSTTATIIAMGGNQISG 237 (549)
Q Consensus 219 l~~~~~L~~L~l~~n~l~~ 237 (549)
+|+.|++++|.+..
T Consensus 153 -----~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 153 -----AIQTMHLAQNPFIC 166 (220)
T ss_dssp -----TCCEEECCSSCEEC
T ss_pred -----CCCEEEeCCCCcCC
Confidence 67778888888764
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=155.09 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=134.3
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCC-cccccccCccceeeecccccccccccccCCCCCCCEEEee
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIP-ANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFK 138 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 138 (549)
+.+++++|.++ .+|..+. ..+++|+|++|++++..| ..|..+++| ++|+|++|.+++..+..|.++++|++|+|+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L-~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQL-RKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCC-CEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 48999999998 6887664 457999999999996645 458899999 999999999998888899999999999999
Q ss_pred cceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccc
Q 039925 139 ENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLY 217 (549)
Q Consensus 139 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~ 217 (549)
+|.+++..+..|..+++|++|+|++|++.+..|..|..++ |++|++++|++++..|..+. .++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~--------------- 153 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD-TLH--------------- 153 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT-TCT---------------
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc-CCC---------------
Confidence 9999977777899999999999999999988899999999 99999999999966676654 333
Q ss_pred cccCcccccEEEccccccccccC
Q 039925 218 WSDVSTTATIIAMGGNQISGTIT 240 (549)
Q Consensus 218 ~l~~~~~L~~L~l~~n~l~~~~~ 240 (549)
+|+.|++++|.+....+
T Consensus 154 ------~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 154 ------SLSTLNLLANPFNCNCY 170 (220)
T ss_dssp ------TCCEEECCSCCEECSGG
T ss_pred ------CCCEEEecCcCCcCCCc
Confidence 67788888898875433
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-18 Score=154.37 Aligned_cols=135 Identities=21% Similarity=0.266 Sum_probs=112.9
Q ss_pred CCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCc-cccCCCCCCEeecccccccccCCcccccccCccc
Q 039925 31 CQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPE-KVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109 (549)
Q Consensus 31 c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 109 (549)
|.|+.+.|+.. ++ +.+|..+.. +|++|+|++|.|++..+. .|..+++|++|+|++|.|++..|..|..+++| +
T Consensus 8 C~~~~l~~s~~--~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~ 81 (192)
T 1w8a_A 8 CEGTTVDCTGR--GL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI-Q 81 (192)
T ss_dssp EETTEEECTTS--CC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC-C
T ss_pred ECCCEEEcCCC--Cc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC-C
Confidence 68888988753 33 467776544 889999999999855554 48889999999999999997778889999999 9
Q ss_pred eeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceeccc
Q 039925 110 KLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIP 171 (549)
Q Consensus 110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 171 (549)
+|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|.+.+..+
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999998888889999999999999999998888889999999999999998886544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-19 Score=191.76 Aligned_cols=190 Identities=14% Similarity=0.131 Sum_probs=118.7
Q ss_pred CCCCCCEeecccccccccCCcccccccCccceeeecccc-------------cccccccccCCCCCCCEEE-eecc----
Q 039925 79 RLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETH-------------LSGQLLDFIGNPSAIQVMI-FKEN---- 140 (549)
Q Consensus 79 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n---- 140 (549)
.+++|+.|+|++|+++ .+|..++.+++| +.|++++|. +.+.+|..++.+++|+.|+ ++.|
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L-~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKEL-QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHH-HHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 3444555555555554 445555555555 555544443 3334444455555555554 3333
Q ss_pred ---------eeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeec
Q 039925 141 ---------SLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYIL 210 (549)
Q Consensus 141 ---------~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~ 210 (549)
.++. +|. ..|+.|+|++|.+++ +|. +..++ |+.|++++|.++ .+|..+. .++
T Consensus 425 L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~-------- 486 (567)
T 1dce_A 425 LRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA-ALR-------- 486 (567)
T ss_dssp HHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-GCT--------
T ss_pred hhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-cCC--------
Confidence 3331 111 247778888887774 555 77777 888888888877 6777665 333
Q ss_pred ccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCcccc
Q 039925 211 LLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQ 290 (549)
Q Consensus 211 ~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (549)
+|+.|+|++|.+++ +| .+..+ ++|+.|+|++|.+++... |..++.+++|+.|+|++|.++
T Consensus 487 -------------~L~~L~Ls~N~l~~-lp-~l~~l--~~L~~L~Ls~N~l~~~~~---p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 487 -------------CLEVLQASDNALEN-VD-GVANL--PRLQELLLCNNRLQQSAA---IQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp -------------TCCEEECCSSCCCC-CG-GGTTC--SSCCEEECCSSCCCSSST---TGGGGGCTTCCEEECTTSGGG
T ss_pred -------------CCCEEECCCCCCCC-Cc-ccCCC--CCCcEEECCCCCCCCCCC---cHHHhcCCCCCEEEecCCcCC
Confidence 57777777888875 45 67777 888888888888875430 467788888888888888888
Q ss_pred ccCCc---cccCCCCCCEEEc
Q 039925 291 GNLPS---SLGYYQNLMELSV 308 (549)
Q Consensus 291 ~~~p~---~l~~l~~L~~L~L 308 (549)
+..|. .+..+++|+.|++
T Consensus 547 ~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 547 QEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GSSSCTTHHHHHCTTCSEEEC
T ss_pred CCccHHHHHHHHCcccCccCC
Confidence 55432 2344788888864
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-17 Score=152.83 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=127.0
Q ss_pred ccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCC
Q 039925 53 VGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAI 132 (549)
Q Consensus 53 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L 132 (549)
...+++|++|++++|.++ .+| .+..+++|++|++++|.++ . +..+..+++| ++|++++|.+++..+..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L-~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNL-ERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTC-CEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCC-CEEEeECCccCcccChhhcCCCCC
Confidence 367789999999999999 677 6899999999999999776 3 3478899999 999999999998888899999999
Q ss_pred CEEEeecceeeeeCCccccCCCCCCEEecccCc-ceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeec
Q 039925 133 QVMIFKENSLEGKFPNTLSNLRSLFYDNINRNE-FSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYIL 210 (549)
Q Consensus 133 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~ 210 (549)
++|++++|.+++..|..+..+++|++|++++|. +. .+| .+..++ |++|++++|.+++ ++ .+. .+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~-~l--------- 180 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIE-DF--------- 180 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGG-GC---------
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hhc-cC---------
Confidence 999999999998788889999999999999998 55 555 688888 9999999999984 44 333 33
Q ss_pred ccccccccccCcccccEEEcccccccc
Q 039925 211 LLAQKLYWSDVSTTATIIAMGGNQISG 237 (549)
Q Consensus 211 ~~~~~l~~l~~~~~L~~L~l~~n~l~~ 237 (549)
++|+.|++++|++.+
T Consensus 181 ------------~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 181 ------------PKLNQLYAFSQTIGG 195 (197)
T ss_dssp ------------SSCCEEEECBC----
T ss_pred ------------CCCCEEEeeCcccCC
Confidence 367778888887753
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-17 Score=152.06 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=131.5
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeec
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKE 139 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (549)
+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|..+++| ++|+|++|+++...+..|..+++|++|+|++
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINL-KELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCC-cEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 46888898888 7887654 899999999999998878899999999 9999999999877778899999999999999
Q ss_pred ceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeeccccccccc
Q 039925 140 NSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYW 218 (549)
Q Consensus 140 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~ 218 (549)
|++++..+..|..+++|++|+|++|++. .+|..+..++ |++|++++|+++ .++...+..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l----------------- 158 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRL----------------- 158 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTC-----------------
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCC-----------------
Confidence 9999776777899999999999999998 7888899999 999999999999 4554332133
Q ss_pred ccCcccccEEEcccccccccc
Q 039925 219 SDVSTTATIIAMGGNQISGTI 239 (549)
Q Consensus 219 l~~~~~L~~L~l~~n~l~~~~ 239 (549)
++|+.|++++|.+....
T Consensus 159 ----~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 159 ----SSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp ----TTCCEEECTTSCBCTTB
T ss_pred ----CCCCEEEeeCCCccCCc
Confidence 36788888889887543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-19 Score=193.07 Aligned_cols=181 Identities=18% Similarity=0.144 Sum_probs=147.5
Q ss_pred ccccCccceeeecccccccccccccCCCCCCCEEEeecce-------------eeeeCCccccCCCCCCEEe-cccCcce
Q 039925 102 SHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENS-------------LEGKFPNTLSNLRSLFYDN-INRNEFS 167 (549)
Q Consensus 102 ~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~ 167 (549)
..+++| +.|+|++|+++ .+|..++++++|+.|++++|. +.+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L-~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQL-FRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTS-SSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccc-eeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 568888 99999999997 789999999999999997765 4456677788888888888 6666543
Q ss_pred ecccc------ccccc---ccceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccc
Q 039925 168 GLIPS------FIFNI---SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGT 238 (549)
Q Consensus 168 ~~~p~------~~~~l---~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~ 238 (549)
. ++. .+..+ .|+.|++++|.++ .+|. +. .+ ++|+.|+|++|.++ .
T Consensus 424 ~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~-~l---------------------~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 424 D-LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LE-QL---------------------LLVTHLDLSHNRLR-A 477 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GG-GG---------------------TTCCEEECCSSCCC-C
T ss_pred h-hhhhhhhcccccccCccCceEEEecCCCCC-CCcC-cc-cc---------------------ccCcEeecCccccc-c
Confidence 2 111 12222 2888999999988 4664 44 22 37889999999999 7
Q ss_pred cChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccC-CccccCCCCCCEEEccCCcccccC
Q 039925 239 ITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNL-PSSLGYYQNLMELSVSRNKLSASL 317 (549)
Q Consensus 239 ~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~ 317 (549)
+|..+..+ ++|+.|+|++|.+++ + | .++.+++|+.|+|++|++++.. |..+..+++|+.|+|++|++++..
T Consensus 478 lp~~~~~l--~~L~~L~Ls~N~l~~-l----p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 478 LPPALAAL--RCLEVLQASDNALEN-V----D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CCGGGGGC--TTCCEEECCSSCCCC-C----G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred cchhhhcC--CCCCEEECCCCCCCC-C----c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 88899999 999999999999984 4 5 7899999999999999999766 999999999999999999999855
Q ss_pred C
Q 039925 318 P 318 (549)
Q Consensus 318 p 318 (549)
|
T Consensus 550 ~ 550 (567)
T 1dce_A 550 G 550 (567)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-18 Score=185.87 Aligned_cols=144 Identities=19% Similarity=0.207 Sum_probs=127.5
Q ss_pred cCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCC
Q 039925 49 LTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGN 128 (549)
Q Consensus 49 lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~ 128 (549)
.|..|..+++|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|..+++| ++|+|++|.|+ .+|..|++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNL-RVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTC-CEEECTTSCCS-SCCSSGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCC-CEEeCcCCcCC-ccChhhcC
Confidence 4678899999999999999999 88988889999999999999999 899999999999 99999999999 77999999
Q ss_pred CCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc--cceeeCCCCcCcccCchhh
Q 039925 129 PSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS--LKWNFLPENSFTGNLPLEI 197 (549)
Q Consensus 129 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--L~~L~l~~n~l~~~~p~~~ 197 (549)
+++|++|+|++|.|+ .+|..|+.+++|++|+|++|.+++.+|..+..+. +..+++++|.+++.+|..+
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 999999999999998 8899999999999999999999999999887765 4568899999998777543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-17 Score=160.78 Aligned_cols=123 Identities=12% Similarity=0.167 Sum_probs=60.3
Q ss_pred CCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEE
Q 039925 56 FGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVM 135 (549)
Q Consensus 56 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L 135 (549)
+.++..+++++|.++ .++ .+..+++|++|++++|.++ .+| .+..+++| ++|++++|++++..+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L-~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNL-KELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTC-CEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCC-CEEECCCCccCCChh--hccCCCCCEE
Confidence 334445555555555 222 3455555666666665555 344 45555555 555555555554333 5555555555
Q ss_pred EeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCc
Q 039925 136 IFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFT 190 (549)
Q Consensus 136 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~ 190 (549)
++++|++++ +|... . ++|++|++++|.+++. + .+..++ |++|++++|+++
T Consensus 91 ~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 91 SVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp ECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCccc-c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCC
Confidence 555555552 23211 1 4555555555555431 1 233444 444444444443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.4e-17 Score=147.50 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=69.5
Q ss_pred cCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCC
Q 039925 78 GRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLF 157 (549)
Q Consensus 78 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 157 (549)
..+++|++|++++|.++ .+| .+..+++| ++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L-~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNI-KDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTC-SEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCC-CEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 55667777777777777 555 56677777 777777775542 23566677777777777777655666666777777
Q ss_pred EEecccCcceecccccccccc-cceeeCCCCc
Q 039925 158 YDNINRNEFSGLIPSFIFNIS-LKWNFLPENS 188 (549)
Q Consensus 158 ~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~ 188 (549)
+|++++|.+++..+..+..++ |++|++++|.
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 777777766655555555555 5555555554
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=145.37 Aligned_cols=132 Identities=22% Similarity=0.254 Sum_probs=120.4
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCCc-ccccccCccceeeecccccccccccccCCCCCCCEEEee
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPA-NLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFK 138 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 138 (549)
+++++++|.++ .+|..+.. +|++|++++|++++..+. .+..+++| ++|+|++|++++..|..|.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC-CEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 68999999997 88886654 899999999999955554 48999999 999999999999999999999999999999
Q ss_pred cceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCch
Q 039925 139 ENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPL 195 (549)
Q Consensus 139 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~ 195 (549)
+|++++..+..|..+++|++|+|++|++++..|..|..++ |++|++++|.+.+..+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9999988888899999999999999999999999999999 99999999999876553
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-17 Score=158.59 Aligned_cols=170 Identities=18% Similarity=0.209 Sum_probs=101.7
Q ss_pred CCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCE
Q 039925 79 RLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFY 158 (549)
Q Consensus 79 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 158 (549)
.+.++..+++++|.++ .++ .+..+++| ++|++++|.++. ++ .+..+++|++|+|++|.+++ ++. +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L-~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKELSGV-QNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHHHTTC-SEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhhcCcC-cEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCE
Confidence 3455666667776666 333 45666666 666666666653 23 45566666666666666663 232 566666666
Q ss_pred EecccCcceecccccccccccceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccc
Q 039925 159 DNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGT 238 (549)
Q Consensus 159 L~L~~n~l~~~~p~~~~~l~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~ 238 (549)
|++++|++++ +|.... + +|+.|++++|.+++.
T Consensus 90 L~L~~N~l~~-l~~~~~--~---------------------------------------------~L~~L~L~~N~l~~~ 121 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGIPS--A---------------------------------------------CLSRLFLDNNELRDT 121 (263)
T ss_dssp EECCSSCCSC-CTTCCC--S---------------------------------------------SCCEEECCSSCCSBS
T ss_pred EECCCCccCC-cCcccc--C---------------------------------------------cccEEEccCCccCCC
Confidence 6666666553 221111 2 455555555555532
Q ss_pred cChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccc
Q 039925 239 ITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 239 ~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
..+..+ ++|+.|++++|++++ + + .+..+++|++|++++|++++. ..+..+++|+.|++++|++++
T Consensus 122 --~~l~~l--~~L~~L~Ls~N~i~~-~----~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 122 --DSLIHL--KNLEILSIRNNKLKS-I----V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp --GGGTTC--TTCCEEECTTSCCCB-C----G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred --hhhcCc--ccccEEECCCCcCCC-C----h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 235555 677777777777663 2 2 466677777777777777744 556777777777777777764
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=143.43 Aligned_cols=135 Identities=16% Similarity=0.222 Sum_probs=103.0
Q ss_pred CCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccce
Q 039925 31 CQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110 (549)
Q Consensus 31 c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~ 110 (549)
|+|.++.|+.. +++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++| ++
T Consensus 7 C~~~~l~~~~~--~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~ 80 (177)
T 2o6r_A 7 CSGTEIRCNSK--GLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL-TI 80 (177)
T ss_dssp EETTEEECCSS--CCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-CE
T ss_pred eCCCEEEecCC--CCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc-CE
Confidence 78999999653 233 4565443 688899999998886555677888899999999998885555557788888 88
Q ss_pred eeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceeccc
Q 039925 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIP 171 (549)
Q Consensus 111 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 171 (549)
|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus 81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888888887777778888888888888888885555556778888888888887775443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7.6e-17 Score=143.77 Aligned_cols=137 Identities=20% Similarity=0.158 Sum_probs=114.1
Q ss_pred CCCCCCEEEccCCcce-ecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCC
Q 039925 55 NFGYLRFINLVDNNFR-GEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQ 133 (549)
Q Consensus 55 ~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~ 133 (549)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++| ++|++++|.+++.+|..+.++++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKL-KKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSC-CEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCC-CEEECcCCcCchHHHHHHhhCCCCC
Confidence 3478999999999998 67888888999999999999999854 778889999 9999999999877888888899999
Q ss_pred EEEeecceeeeeC-CccccCCCCCCEEecccCcceeccc---ccccccc-cceeeCCCCcCcccCch
Q 039925 134 VMIFKENSLEGKF-PNTLSNLRSLFYDNINRNEFSGLIP---SFIFNIS-LKWNFLPENSFTGNLPL 195 (549)
Q Consensus 134 ~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~-L~~L~l~~n~l~~~~p~ 195 (549)
+|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..++ |++|++++|.+. .+|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 9999999998432 2678889999999999999885544 4778888 999999988877 4543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=143.36 Aligned_cols=130 Identities=17% Similarity=0.225 Sum_probs=81.0
Q ss_pred CCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccce
Q 039925 31 CQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110 (549)
Q Consensus 31 c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~ 110 (549)
|.|..+.|+.. +++ .+|..+. ++|++|+|++|.|+ .+|..|.++++|++|+|++|.|++..+..|..+++| ++
T Consensus 10 C~~~~l~~~~~--~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L-~~ 82 (193)
T 2wfh_A 10 CLDTVVRCSNK--GLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-LT 82 (193)
T ss_dssp EETTEEECTTS--CCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-CE
T ss_pred eCCCEEEcCCC--CCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-CE
Confidence 45666666532 222 4554432 46666777777666 566666666677777777776665555556666666 66
Q ss_pred eeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcce
Q 039925 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFS 167 (549)
Q Consensus 111 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 167 (549)
|+|++|+++...+..|..+++|++|+|++|.++...+..|..+++|++|+|++|.+.
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 666666666666666666666666666666666444445666666666666666654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-17 Score=177.96 Aligned_cols=246 Identities=14% Similarity=0.096 Sum_probs=154.5
Q ss_pred CCCCCcceeCCCCCceE------eecCccccCCCCCCEEEccCCcce---ecCCcccc------------CCCCCCEeec
Q 039925 30 LCQWRGVTCTHQHQRIN------KCLTPHVGNFGYLRFINLVDNNFR---GEIPEKVG------------RLFRLEYLLL 88 (549)
Q Consensus 30 ~c~w~gv~c~~~~~~v~------g~lp~~~~~l~~L~~L~L~~n~l~---~~~p~~~~------------~l~~L~~L~L 88 (549)
|+.|.++.+... ..+. ...+..+..+++|++|+|+++... +.+|..++ .+++|++|+|
T Consensus 41 ck~W~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L 119 (592)
T 3ogk_B 41 CRRWFKIDSETR-EHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHF 119 (592)
T ss_dssp CHHHHHHHHHHC-CEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEE
T ss_pred hHHHHHhhhccc-cEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEe
Confidence 337887754321 2222 122334567899999999886421 23443333 7899999999
Q ss_pred ccccccccCCcccccc-c-Cccceeeecccc-ccc-ccccccCCCCCCCEEEeecceeeee----CCccccCCCCCCEEe
Q 039925 89 ANNHFSGKIPANLSHC-S-NLLTKLFICETH-LSG-QLLDFIGNPSAIQVMIFKENSLEGK----FPNTLSNLRSLFYDN 160 (549)
Q Consensus 89 s~n~l~~~~p~~l~~l-~-~L~~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~ 160 (549)
++|.+++..+..+... + +| ++|++++|. ++. .++....++++|++|+|++|.+++. ++..+..+++|++|+
T Consensus 120 ~~~~i~~~~~~~l~~~~~~~L-~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~ 198 (592)
T 3ogk_B 120 RRMIVSDLDLDRLAKARADDL-ETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN 198 (592)
T ss_dssp ESCBCCHHHHHHHHHHHGGGC-CEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEE
T ss_pred eccEecHHHHHHHHHhccccC-cEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEE
Confidence 9999887666666663 3 48 999999987 221 2333445789999999999998755 333456789999999
Q ss_pred cccCcce----ecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccc------cccccccCcccccEEE
Q 039925 161 INRNEFS----GLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLA------QKLYWSDVSTTATIIA 229 (549)
Q Consensus 161 L~~n~l~----~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~------~~l~~l~~~~~L~~L~ 229 (549)
+++|.+. ..++..+..++ |++|++++|.+. .++..+. .+++|+.|+++... .....+...++|+.|+
T Consensus 199 L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ 276 (592)
T 3ogk_B 199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFK-AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276 (592)
T ss_dssp CTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHH-HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEE
T ss_pred eeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHh-hhhHHHhhcccccccccchHHHHHHhhccccccccC
Confidence 9999987 34455666778 999999999988 4776666 89999999997411 0111222233555555
Q ss_pred ccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeecc
Q 039925 230 MGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALD 285 (549)
Q Consensus 230 l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls 285 (549)
++++.. ..+|..+..+ ++|++|+|++|.+++... +..+..+++|++|+++
T Consensus 277 l~~~~~-~~l~~~~~~~--~~L~~L~Ls~~~l~~~~~---~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 277 LSYMGP-NEMPILFPFA--AQIRKLDLLYALLETEDH---CTLIQKCPNLEVLETR 326 (592)
T ss_dssp ETTCCT-TTGGGGGGGG--GGCCEEEETTCCCCHHHH---HHHHTTCTTCCEEEEE
T ss_pred ccccch-hHHHHHHhhc--CCCcEEecCCCcCCHHHH---HHHHHhCcCCCEEecc
Confidence 554322 2334444444 555555555555432210 1223444445555444
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.3e-17 Score=158.42 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=69.0
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce------------------------------eEEEeccccCCCceEEEEEe
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------AGYSEGTDFKGIDFKAVVFD 441 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------~g~~~~~~~~~~~~~~lv~e 441 (549)
..+.|...+.||+|+||.||+|+... +.. ++++.+ .+..++|||
T Consensus 56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~~~E~~il~~l~HpnIV~l~~~~~~-----~~~~~ivmE 130 (336)
T 4g3f_A 56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVRE-----GPWVNIFME 130 (336)
T ss_dssp TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCTHHHHTTTTCCCTTBCCEEEEEEE-----TTEEEEEEC
T ss_pred chhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhHHHHHHHHHhCCCCCCCcEEEEEEE-----CCEEEEEEe
Confidence 34567777889999999999999753 332 577776 788999999
Q ss_pred ecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 442 YMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 442 y~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||++|+|.++|+..+ .+++.+...|+.||++||+|||
T Consensus 131 y~~gg~L~~~l~~~~------~l~e~~~~~~~~qi~~aL~ylH 167 (336)
T 4g3f_A 131 LLEGGSLGQLIKQMG------CLPEDRALYYLGQALEGLEYLH 167 (336)
T ss_dssp CCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999998654 6999999999999999999999
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-16 Score=140.41 Aligned_cols=128 Identities=20% Similarity=0.269 Sum_probs=117.2
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeec
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKE 139 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (549)
+++++++|.++ .+|..+. ++|++|+|++|.|+ .+|..|..+++| ++|+|++|.|++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L-~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL-TLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC-CEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 57999999999 7887654 68999999999999 789999999999 9999999999988889999999999999999
Q ss_pred ceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCccc
Q 039925 140 NSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGN 192 (549)
Q Consensus 140 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~ 192 (549)
|.+++..|..|..+++|++|+|++|.++...+..|..++ |+.|++++|.+...
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 999988888999999999999999999976667788999 99999999998743
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=150.08 Aligned_cols=87 Identities=32% Similarity=0.590 Sum_probs=73.8
Q ss_pred ccccccCcCCCccccCceecEEEEEeCCCce-----------------------------------eEEEeccccCCCce
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------~g~~~~~~~~~~~~ 435 (549)
..++++|...+.||+|+||.||+|++.++.. ++++.. .+.
T Consensus 35 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~ 109 (321)
T 2qkw_B 35 EEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE-----RNE 109 (321)
T ss_dssp CCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCC-----TTC
T ss_pred HHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC-----CCe
Confidence 3688999999999999999999999875543 456655 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... .....++|..++.++.|+++||+|||
T Consensus 110 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lH 156 (321)
T 2qkw_B 110 MILIYKYMENGNLKRHLYGSD--LPTMSMSWEQRLEICIGAARGLHYLH 156 (321)
T ss_dssp CEEEEECCTTCBTGGGSSSSC--CCSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHhccC--CCccccCHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999997653 12346899999999999999999999
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-17 Score=175.73 Aligned_cols=37 Identities=16% Similarity=0.042 Sum_probs=25.9
Q ss_pred ccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeeccc
Q 039925 176 NIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLL 212 (549)
Q Consensus 176 ~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~ 212 (549)
.++ |++|++++|.+++.....+...+++|+.|++.+.
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 456 8888888888765444444447788888888763
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-16 Score=158.56 Aligned_cols=84 Identities=17% Similarity=0.129 Sum_probs=64.1
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~ 433 (549)
...++|...+.||+|+||.||+|+... +.. ++++.+ .
T Consensus 21 ~sme~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~-----~ 95 (350)
T 4b9d_A 21 QSMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEE-----N 95 (350)
T ss_dssp SCCCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----T
T ss_pred CcccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEE-----C
Confidence 345678888999999999999999753 332 566666 7
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++|||||++|+|.++|+..+ ...+++.+...|+.||+.||+|||
T Consensus 96 ~~~yiVmEy~~gg~L~~~i~~~~----~~~~~e~~~~~~~~qi~~aL~ylH 142 (350)
T 4b9d_A 96 GSLYIVMDYCEGGDLFKRINAQK----GVLFQEDQILDWFVQICLALKHVH 142 (350)
T ss_dssp TEEEEEEECCTTCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCcHHHHHHHcC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999997543 345788888999999999999999
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-16 Score=137.41 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=58.5
Q ss_pred CCCCEEEccCCcce-ecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEE
Q 039925 57 GYLRFINLVDNNFR-GEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVM 135 (549)
Q Consensus 57 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L 135 (549)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++| ++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L-~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL-KKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC-CEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC-CEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45666666666665 45555556666666666666666532 445555555 555555555554445444445555555
Q ss_pred Eeecceeeee-CCccccCCCCCCEEecccCcce
Q 039925 136 IFKENSLEGK-FPNTLSNLRSLFYDNINRNEFS 167 (549)
Q Consensus 136 ~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~ 167 (549)
++++|.+++. .+..+..+++|++|++++|.++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 5555555431 1244444555555555555444
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-17 Score=177.76 Aligned_cols=252 Identities=13% Similarity=0.070 Sum_probs=140.5
Q ss_pred ccCCCCCCEEEccCC-cceecCCccccCCCCCCEeeccccc-------cc-----------------------ccCCccc
Q 039925 53 VGNFGYLRFINLVDN-NFRGEIPEKVGRLFRLEYLLLANNH-------FS-----------------------GKIPANL 101 (549)
Q Consensus 53 ~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~n~-------l~-----------------------~~~p~~l 101 (549)
+.++++|++|++++| .+. .+|..+..+++|++|+++.+. +. ..+|..+
T Consensus 207 ~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~ 285 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY 285 (594)
T ss_dssp HHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGH
T ss_pred HHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHH
Confidence 355799999999988 444 477777788888888755442 11 1122333
Q ss_pred ccccCccceeeeccccccccc-ccccCCCCCCCEEEeecceeee-eCCccccCCCCCCEEeccc---------Ccceecc
Q 039925 102 SHCSNLLTKLFICETHLSGQL-LDFIGNPSAIQVMIFKENSLEG-KFPNTLSNLRSLFYDNINR---------NEFSGLI 170 (549)
Q Consensus 102 ~~l~~L~~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~---------n~l~~~~ 170 (549)
..+++| ++|++++|.+++.. ...+..+++|++|++++| +.. .++.....+++|++|++.+ +.++...
T Consensus 286 ~~~~~L-~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 286 SVCSRL-TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHHTTC-CEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred HhhCCC-CEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 345666 77777777655332 223456677777777766 331 1222223466677776632 3333222
Q ss_pred ccccc-ccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeec-------ccccccc-------cccCcccccEEEccccc
Q 039925 171 PSFIF-NIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYIL-------LLAQKLY-------WSDVSTTATIIAMGGNQ 234 (549)
Q Consensus 171 p~~~~-~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~-------~~~~~l~-------~l~~~~~L~~L~l~~n~ 234 (549)
...+. .++ |++|.+..|.+++.....+...+++|+.|++. ..+.... .+...++|+.|++++ .
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence 22222 345 66676666666655555555456777777776 2222110 022234677777755 5
Q ss_pred cccccChhhhh-ccccCccEEEcCCCcccccCCCcCcccc-CCccccCeeeccCccccccCCc-cccCCCCCCEEEccCC
Q 039925 235 ISGTITLGIKK-LIFVNLYALTMVKNKLSGPIPHHIASSL-GNLTLLTYLALDNNKLQGNLPS-SLGYYQNLMELSVSRN 311 (549)
Q Consensus 235 l~~~~~~~~~~-l~~~~L~~L~L~~n~l~~~~p~~l~~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N 311 (549)
+++..+..+.. + ++|+.|+|++|.+++.. +..+ ..+++|++|+|++|.+++..+. .+..+++|+.|++++|
T Consensus 443 l~~~~~~~l~~~~--~~L~~L~L~~~~i~~~~----~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 443 LTDKVFEYIGTYA--KKMEMLSVAFAGDSDLG----MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp CCHHHHHHHHHHC--TTCCEEEEESCCSSHHH----HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred ccHHHHHHHHHhc--hhccEeeccCCCCcHHH----HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 55444444443 4 66777777777665433 1222 4566777777777776533222 2344667777777777
Q ss_pred ccc
Q 039925 312 KLS 314 (549)
Q Consensus 312 ~l~ 314 (549)
+++
T Consensus 517 ~~~ 519 (594)
T 2p1m_B 517 SVS 519 (594)
T ss_dssp CCB
T ss_pred CCC
Confidence 664
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-15 Score=133.94 Aligned_cols=132 Identities=14% Similarity=0.191 Sum_probs=115.5
Q ss_pred CCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEee
Q 039925 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFK 138 (549)
Q Consensus 59 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 138 (549)
.+.+++++|+++ .+|..+. ++|++|++++|++++..+..+..+++| ++|++++|.+++..+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQL-TKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-SEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccc-cEEECCCCcceEeChhHccCCCccCEEECC
Confidence 468999999998 6776543 799999999999996555667899999 999999999998878889999999999999
Q ss_pred cceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCc
Q 039925 139 ENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLP 194 (549)
Q Consensus 139 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p 194 (549)
+|.+++..+..+..+++|++|++++|.+++..+..+..++ |++|++++|.+.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999977677789999999999999999976666678888 9999999999986554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=132.74 Aligned_cols=129 Identities=16% Similarity=0.070 Sum_probs=111.5
Q ss_pred CCCCCCEeeccccccc-ccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCC
Q 039925 79 RLFRLEYLLLANNHFS-GKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLF 157 (549)
Q Consensus 79 ~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 157 (549)
..++|+.|++++|.++ +.+|..+..+++| ++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEEL-EFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTC-CEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCC-cEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 3478999999999998 7899989999999 9999999999876 7899999999999999999977888888899999
Q ss_pred EEecccCcceec-ccccccccc-cceeeCCCCcCcccCc--hhhhhcCCCCcEeeec
Q 039925 158 YDNINRNEFSGL-IPSFIFNIS-LKWNFLPENSFTGNLP--LEIGVTLPKGRNYYIL 210 (549)
Q Consensus 158 ~L~L~~n~l~~~-~p~~~~~l~-L~~L~l~~n~l~~~~p--~~~~~~l~~L~~L~l~ 210 (549)
+|++++|.+++. .+..+..++ |++|++++|.+++..+ ......+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999999864 447889999 9999999999995443 1333378888887765
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-15 Score=147.98 Aligned_cols=85 Identities=33% Similarity=0.470 Sum_probs=70.2
Q ss_pred cccccCcCC------CccccCceecEEEEEeCCCce--------------------------------------eEEEec
Q 039925 392 TVTNEFSSS------NMIGQGSFGSVYKGILGEKWT--------------------------------------AGYSEG 427 (549)
Q Consensus 392 ~~~~~~~~~------~~lG~G~~g~Vy~~~~~~~~~--------------------------------------~g~~~~ 427 (549)
.++++|+.. +.||+|+||.||+|...+..+ ++++..
T Consensus 22 ~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~ 101 (307)
T 2nru_A 22 NVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSD 101 (307)
T ss_dssp HHTTTTCCSBTTTTCCEEEECSSEEEEEEESSSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred HHHcccccccccccCCccccCCCeEEEEEEECCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEec
Confidence 567777766 889999999999998755433 466655
Q ss_pred cccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 428 TDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 428 ~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... ....++|..+..++.|+++||+|||
T Consensus 102 -----~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH 150 (307)
T 2nru_A 102 -----GDDLCLVYVYMPNGSLLDRLSCLD---GTPPLSWHMRCKIAQGAANGINFLH 150 (307)
T ss_dssp -----SSSCEEEEECCTTCBHHHHHHTGG---GCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCceEEEEEecCCCcHHHHHHhcc---CCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 677899999999999999997543 2346899999999999999999999
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6.4e-15 Score=131.19 Aligned_cols=113 Identities=19% Similarity=0.127 Sum_probs=100.8
Q ss_pred CCCCCCEeeccccccc-ccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCC
Q 039925 79 RLFRLEYLLLANNHFS-GKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLF 157 (549)
Q Consensus 79 ~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 157 (549)
..++|++|++++|.++ +.+|..+..+++| ++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNL-EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGC-CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCC-CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3478999999999998 7889989999999 9999999999866 7899999999999999999977888888899999
Q ss_pred EEecccCcceecc-cccccccc-cceeeCCCCcCcccCch
Q 039925 158 YDNINRNEFSGLI-PSFIFNIS-LKWNFLPENSFTGNLPL 195 (549)
Q Consensus 158 ~L~L~~n~l~~~~-p~~~~~l~-L~~L~l~~n~l~~~~p~ 195 (549)
+|++++|.+++.. +..+..++ |++|++++|.+++ +|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~ 137 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LND 137 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STT
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHH
Confidence 9999999998642 27888898 9999999999984 444
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-16 Score=156.52 Aligned_cols=83 Identities=22% Similarity=0.327 Sum_probs=70.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~ 434 (549)
...++|...+.||+|+||.||+|++.. +.. +|+|.. .+
T Consensus 111 ~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~ 185 (377)
T 3cbl_A 111 LNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQ-----KQ 185 (377)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECS-----SS
T ss_pred EchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEec-----CC
Confidence 356688888999999999999999863 322 577766 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.++++... ..+++..++.++.|+|+||+|||
T Consensus 186 ~~~lv~e~~~~g~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~LH 230 (377)
T 3cbl_A 186 PIYIVMELVQGGDFLTFLRTEG-----ARLRVKTLLQMVGDAAAGMEYLE 230 (377)
T ss_dssp SCEEEEECCTTCBHHHHHHHHG-----GGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998643 45889999999999999999999
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.5e-16 Score=148.53 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=63.3
Q ss_pred cCCCccccCceecEEEEEeCCCce--------------------------------------eEEEeccccCCCceEEEE
Q 039925 398 SSSNMIGQGSFGSVYKGILGEKWT--------------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 398 ~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
...+.||+|+||.||+|+...... ++++... ..++...++|
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~-~~~~~~~~lv 107 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEE-ETTEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeec-cCCCcEEEEE
Confidence 445679999999999999864332 4554321 1113568999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||++|+|.++++... .+++.....++.||++||+|||
T Consensus 108 mEy~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~ylH 146 (290)
T 3fpq_A 108 TELMTSGTLKTYLKRFK------VMKIKVLRSWCRQILKGLQFLH 146 (290)
T ss_dssp EECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998654 6899999999999999999999
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-15 Score=150.01 Aligned_cols=199 Identities=12% Similarity=0.069 Sum_probs=120.3
Q ss_pred ccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcc----eecccccccccc-
Q 039925 104 CSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEF----SGLIPSFIFNIS- 178 (549)
Q Consensus 104 l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l----~~~~p~~~~~l~- 178 (549)
+++| +.|+|.+ .++...+.+|.++++|+.|++++|.+....+..|..+.++..+.+..+.. .......|.++.
T Consensus 100 ~~~L-~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTL-EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTC-CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCC-cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 5555 5555555 55544445555566666666665555545555555555555544443211 111112232333
Q ss_pred cc-eeeCCCCcCcccCchhhhh---cCCCCcEeeecccccccccc---cCcccccEEEccccccccccChhhhhccccCc
Q 039925 179 LK-WNFLPENSFTGNLPLEIGV---TLPKGRNYYILLLAQKLYWS---DVSTTATIIAMGGNQISGTITLGIKKLIFVNL 251 (549)
Q Consensus 179 L~-~L~l~~n~l~~~~p~~~~~---~l~~L~~L~l~~~~~~l~~l---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L 251 (549)
|+ .+.+... +.++..++. ...++..+.+.+.+.....- ..+++|+.+++++|+++...+..|.++ .+|
T Consensus 178 L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~--~~L 252 (329)
T 3sb4_A 178 LETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK--KYL 252 (329)
T ss_dssp CEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC--TTC
T ss_pred cceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC--CCC
Confidence 32 2222221 122332221 23445555555432211111 124689999999999987777889999 999
Q ss_pred cEEEcCCCcccccCCCcCccccCCccccC-eeeccCccccccCCccccCCCCCCEEEccCCcccc
Q 039925 252 YALTMVKNKLSGPIPHHIASSLGNLTLLT-YLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 252 ~~L~L~~n~l~~~~p~~l~~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
+.|+|.+| ++ .++ +..|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|+++.
T Consensus 253 ~~l~l~~n-i~-~I~---~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 253 LKIKLPHN-LK-TIG---QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp CEEECCTT-CC-EEC---TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CEEECCcc-cc-eeh---HHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 99999988 55 454 57789999999 999988 7775667899999999999999998885
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=144.70 Aligned_cols=86 Identities=26% Similarity=0.475 Sum_probs=73.1
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce------------------------------------eEEEeccccCCCce
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------------------~g~~~~~~~~~~~~ 435 (549)
.++++|...+.||+|+||.||+|...++.. ++++.. ...
T Consensus 27 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~ 101 (326)
T 3uim_A 27 VASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT-----PTE 101 (326)
T ss_dssp TTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECC-----SSC
T ss_pred HHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEec-----CCc
Confidence 578899999999999999999998765443 466665 677
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... .....++|..+..++.|+++||+|||
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lH 148 (326)
T 3uim_A 102 RLLVYPYMANGSVASCLRERP--ESQPPLDWPKRQRIALGSARGLAYLH 148 (326)
T ss_dssp CEEEEECCTTCBHHHHHHCCS--TTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeccCCCHHHHHHhcc--ccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998654 12346999999999999999999999
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-15 Score=133.95 Aligned_cols=132 Identities=16% Similarity=0.221 Sum_probs=94.4
Q ss_pred cccCCCCCCEEEccCCcceecCCccccCCC-CCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCC
Q 039925 52 HVGNFGYLRFINLVDNNFRGEIPEKVGRLF-RLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPS 130 (549)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~ 130 (549)
.+.++++|+.|++++|.++ .+|. +..+. +|++|++++|.+++ + ..+..+++| ++|++++|.+++..+..|..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRL-KTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSC-CEEECCSSCCCEECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCC-CEEECCCCcccccCcchhhcCC
Confidence 4566778888888888887 4554 44444 78888888888874 3 567777788 8888888888765555567778
Q ss_pred CCCEEEeecceeeeeCCc--cccCCCCCCEEecccCcceeccccc----ccccc-cceeeCCCCcCc
Q 039925 131 AIQVMIFKENSLEGKFPN--TLSNLRSLFYDNINRNEFSGLIPSF----IFNIS-LKWNFLPENSFT 190 (549)
Q Consensus 131 ~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~-L~~L~l~~n~l~ 190 (549)
+|++|++++|.++ .+|. .+..+++|++|++++|.+. .+|.. +..++ |+.|++++|...
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888888876 4555 6777778888888888776 34443 66666 777777777654
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-15 Score=155.85 Aligned_cols=144 Identities=25% Similarity=0.270 Sum_probs=106.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce--------------------------------eEEEeccccCCCceEEEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
...++|...+.||+|+||.||+|.+.+..+ +|+|... ....++|
T Consensus 190 i~~~~~~~~~~lG~G~fg~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~----~~~~~iv 265 (450)
T 1k9a_A 190 LNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEE----KGGLYIV 265 (450)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTEEEEEEEESSCTTSHHHHHHHHHHHTCCCTTBCCEEEEEECT----TSCEEEE
T ss_pred cChHHeEEEeeecCcCCeeEEEEEecCCeEEEEEeCCchHHHHHHHHHHHHHhccCCCEEEEEEEEEcC----CCceEEE
Confidence 456788888999999999999999876544 5666551 3478999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh-----------------------------c-----
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR-----------------------------V----- 485 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH-----------------------------~----- 485 (549)
||||++|+|.++++... ...+++..++.++.|||+||+||| .
T Consensus 266 ~e~~~~g~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~ 341 (450)
T 1k9a_A 266 TEYMAKGSLVDYLRSRG----RSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS 341 (450)
T ss_dssp EECCTTCBHHHHHHHHC----TTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEECC-
T ss_pred EEecCCCcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccc
Confidence 99999999999998653 234789999999999999999999 0
Q ss_pred ---------cccCCc------------------ceeeecc-C------------------c-ccchHHHHHHHHHHHHHH
Q 039925 486 ---------KMALPE------------------KVMEIVE-S------------------S-LLLEIEDCLVSVLTIGIL 518 (549)
Q Consensus 486 ---------~~~~~~------------------~~~~~~~-~------------------~-~~~~~~~~~~~l~~l~~~ 518 (549)
....|+ .+.+++. . + ....+..++.++.+++.+
T Consensus 342 ~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~ 421 (450)
T 1k9a_A 342 TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYDVMKN 421 (450)
T ss_dssp -----CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHH
T ss_pred cccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHH
Confidence 000000 0001111 0 0 011124566789999999
Q ss_pred hccCCCCCCCCHHHHHHHHHHhhhh
Q 039925 519 CSVESPSERMEKPYIVSKLSHAREN 543 (549)
Q Consensus 519 C~~~~P~~RP~~~~v~~~L~~~~~~ 543 (549)
||+.+|++||+|.+|++.|+.+...
T Consensus 422 cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 422 CWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HcCCChhHCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999998754
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.3e-15 Score=145.09 Aligned_cols=82 Identities=20% Similarity=0.281 Sum_probs=70.4
Q ss_pred ccccCcCCCccccCceecEEEEEeCCC-ce-----------------------------------eEEEeccccCCCceE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEK-WT-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
..++|...+.||+|+||.||+|..... .. ++++.. .+..
T Consensus 8 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~ 82 (310)
T 3s95_A 8 RPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYK-----DKRL 82 (310)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTEE
T ss_pred ChhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEec-----CCee
Confidence 456888899999999999999998542 22 567766 6789
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.++++... ..++|..+..++.|+++||+|||
T Consensus 83 ~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~al~~lH 125 (310)
T 3s95_A 83 NFITEYIKGGTLRGIIKSMD-----SQYPWSQRVSFAKDIASGMAYLH 125 (310)
T ss_dssp EEEEECCTTCBHHHHHHHCC-----TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCcHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998643 46899999999999999999999
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-15 Score=152.18 Aligned_cols=83 Identities=24% Similarity=0.427 Sum_probs=69.1
Q ss_pred cccccCcCCCccccCceecEEEEEeC----CCc-e-----------------------------------eEEEeccccC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG----EKW-T-----------------------------------AGYSEGTDFK 431 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~----~~~-~-----------------------------------~g~~~~~~~~ 431 (549)
...++|...+.||+|+||.||+|++. ++. + +|++..
T Consensus 42 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~---- 117 (373)
T 2qol_A 42 LDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTK---- 117 (373)
T ss_dssp CCGGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS----
T ss_pred cCHhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee----
Confidence 35568999999999999999999864 221 1 566766
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.++++... ..+++.+++.++.|+++||+|||
T Consensus 118 -~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH 164 (373)
T 2qol_A 118 -SKPVMIVTEYMENGSLDSFLRKHD-----AQFTVIQLVGMLRGIASGMKYLS 164 (373)
T ss_dssp -SSSCEEEEECCTTCBHHHHHHTTT-----TCSCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCceEEEEeCCCCCcHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998643 46899999999999999999999
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-15 Score=148.94 Aligned_cols=81 Identities=17% Similarity=0.123 Sum_probs=69.5
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCce
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~ 435 (549)
...+.|...+.||+|+||.||+|+... +.. ++++.. ++.
T Consensus 71 dp~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-----~~~ 145 (346)
T 4fih_A 71 DPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-----GDE 145 (346)
T ss_dssp CGGGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred ChhHhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----CCE
Confidence 445678888899999999999999853 332 566766 788
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++|||||++|+|.++++.. .+++.+...|+.||+.||+|||
T Consensus 146 ~~ivmEy~~gg~L~~~l~~~-------~l~e~~~~~~~~qi~~aL~ylH 187 (346)
T 4fih_A 146 LWVVMEFLEGGALTDIVTHT-------RMNEEQIAAVCLAVLQALSVLH 187 (346)
T ss_dssp EEEEECCCTTEEHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999753 4899999999999999999999
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-15 Score=147.72 Aligned_cols=83 Identities=20% Similarity=0.347 Sum_probs=69.2
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cc----e-----------------------------------eEEEeccccC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KW----T-----------------------------------AGYSEGTDFK 431 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~----~-----------------------------------~g~~~~~~~~ 431 (549)
...+.|...+.||+|+||.||+|.+.. +. + ++++..
T Consensus 46 ~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---- 121 (325)
T 3kul_A 46 IEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTR---- 121 (325)
T ss_dssp CCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECG----
T ss_pred cChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEe----
Confidence 345678888999999999999999742 11 2 566665
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++... ..+++..+..++.|+++||+|||
T Consensus 122 -~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~L~~LH 168 (325)
T 3kul_A 122 -GRLAMIVTEYMENGSLDTFLRTHD-----GQFTIMQLVGMLRGVGAGMRYLS 168 (325)
T ss_dssp -GGCCEEEEECCTTCBHHHHHHTTT-----TCSCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCccEEEeeCCCCCcHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999997543 46899999999999999999999
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-16 Score=146.93 Aligned_cols=135 Identities=15% Similarity=0.166 Sum_probs=83.4
Q ss_pred cCCCCCCEEEccCCcceecCCc------cccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccC
Q 039925 54 GNFGYLRFINLVDNNFRGEIPE------KVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIG 127 (549)
Q Consensus 54 ~~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~ 127 (549)
.....++.++++.+.+++.+|. .|..+++|++|+|++|.+++ +| .+..+++| ++|++++|.++ .+|..+.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L-~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENL-RILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTC-CEEEEEEEEEC-SCSSHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCC-CEEECCCCCcc-cccchhh
Confidence 3344555556666666555554 66666677777777776663 55 66666666 77777777666 4455555
Q ss_pred CCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceeccc-ccccccc-cceeeCCCCcCcccCc
Q 039925 128 NPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIP-SFIFNIS-LKWNFLPENSFTGNLP 194 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~-L~~L~l~~n~l~~~~p 194 (549)
.+++|++|++++|.+++ +| .+..+++|++|++++|++....+ ..+..++ |++|++++|.+.+..|
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 56667777777776663 33 46666667777777776664322 3556666 7777777776654433
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-15 Score=156.03 Aligned_cols=84 Identities=21% Similarity=0.369 Sum_probs=71.3
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc--e---------------------------------eEEEeccccCCCceE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW--T---------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~--~---------------------------------~g~~~~~~~~~~~~~ 436 (549)
...++|...+.||+|+||.||+|++.... + +|+|.. ....
T Consensus 217 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-----~~~~ 291 (495)
T 1opk_A 217 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-----EPPF 291 (495)
T ss_dssp CCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-----SSSC
T ss_pred cCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEec-----CCcE
Confidence 35667888899999999999999986422 1 577776 6788
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|||||++|+|.++++... ...+++..++.++.|||+||+|||
T Consensus 292 ~lv~E~~~~g~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~L~~LH 335 (495)
T 1opk_A 292 YIITEFMTYGNLLDYLRECN----RQEVSAVVLLYMATQISSAMEYLE 335 (495)
T ss_dssp EEEEECCTTCBHHHHHHHSC----TTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCCCHHHHHHhcC----cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998643 346899999999999999999999
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-15 Score=144.90 Aligned_cols=87 Identities=16% Similarity=0.251 Sum_probs=62.2
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccc-------c
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTD-------F 430 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~-------~ 430 (549)
+||...+.||+|+||+||+|+... +.. ++++...+ .
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 468888999999999999999753 322 34443211 0
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
......++|||||++|+|.++++... .....++...+.|+.||++||+|||
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~---~~~~~~~~~~~~i~~qi~~al~ylH 135 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRC---TIEERERSVCLHIFLQIAEAVEFLH 135 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCC---SGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcC---CCChhHHHHHHHHHHHHHHHHHHHH
Confidence 11234789999999999999998654 2234566677899999999999999
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-15 Score=146.36 Aligned_cols=84 Identities=20% Similarity=0.307 Sum_probs=66.8
Q ss_pred ccccCcCCCccccCceecEEEEEeC-----CCce-----------------------------------eEEEeccccCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILG-----EKWT-----------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~-----~~~~-----------------------------------~g~~~~~~~~~ 432 (549)
..++|...+.||+|+||.||+|++. ++.. ++++...+
T Consensus 8 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--- 84 (295)
T 3ugc_A 8 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAG--- 84 (295)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHH---
T ss_pred CHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC---
Confidence 4567888899999999999999863 2221 45554311
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 85 ~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH 131 (295)
T 3ugc_A 85 RRNLKLIMEYLPYGSLRDYLQKHK-----ERIDHIKLLQYTSQICKGMEYLG 131 (295)
T ss_dssp HTSCEEEEECCTTCBHHHHHHHCG-----GGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEeCCCCCHHHHHHhcc-----cccCHHHHHHHHHHHHHHHHHHh
Confidence 345799999999999999998654 45899999999999999999999
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.2e-15 Score=141.92 Aligned_cols=85 Identities=12% Similarity=0.167 Sum_probs=70.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce------------------------------------eEEEeccccCCCceE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------------------~g~~~~~~~~~~~~~ 436 (549)
..++|...+.||+|+||.||+|++.+..+ ++++... .....
T Consensus 8 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~~~ 84 (271)
T 3kmu_A 8 DFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSP---PAPHP 84 (271)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTT---TSSSC
T ss_pred CHHHhHHHHHhcCCCcceEEEEEECCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccC---CCCCe
Confidence 45678888999999999999999875444 4555541 12678
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.++++... ...+++..+..++.|+++||+|||
T Consensus 85 ~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH 128 (271)
T 3kmu_A 85 TLITHWMPYGSLYNVLHEGT----NFVVDQSQAVKFALDMARGMAFLH 128 (271)
T ss_dssp EEEEECCTTCBHHHHHHSCS----SCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred EeeecccCCCcHHHHHhhcc----cCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998653 346899999999999999999999
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.3e-15 Score=140.73 Aligned_cols=82 Identities=24% Similarity=0.334 Sum_probs=69.7
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..++|...+.||+|+||.||+|.+.++.. ++++.. ....++
T Consensus 8 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~~l 82 (269)
T 4hcu_A 8 DPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-----QAPICL 82 (269)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECS-----SSSEEE
T ss_pred ChhhceeeheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEec-----CCceEE
Confidence 44678888999999999999999865442 466665 677899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.++++... ..+++..+..++.|+++||+|||
T Consensus 83 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~~lH 123 (269)
T 4hcu_A 83 VFEFMEHGCLSDYLRTQR-----GLFAAETLLGMCLDVCEGMAYLE 123 (269)
T ss_dssp EEECCTTCBHHHHHHTTT-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcHHHHHHhcC-----cccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997543 46899999999999999999999
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-15 Score=150.07 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=70.0
Q ss_pred ccccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCc
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~ 434 (549)
....+.|...+.||+|+||.||+|+... +.. ++++.. .+
T Consensus 147 ~dp~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-----~~ 221 (423)
T 4fie_A 147 GDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-----GD 221 (423)
T ss_dssp SCGGGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEE-----TT
T ss_pred CChhHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEE-----CC
Confidence 3456779889999999999999999753 332 566666 78
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++|||||++|+|.++++.. .+++.+...|+.||++||+|||
T Consensus 222 ~~~iVmEy~~gG~L~~~i~~~-------~l~e~~~~~~~~qil~aL~ylH 264 (423)
T 4fie_A 222 ELWVVMEFLEGGALTDIVTHT-------RMNEEQIAAVCLAVLQALSVLH 264 (423)
T ss_dssp EEEEEEECCTTEEHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCcHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999753 4899999999999999999999
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-15 Score=144.22 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=67.5
Q ss_pred cccCcCCCccccCceecEEEEEeCC----Cce-------------------------------------eEEEeccccCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE----KWT-------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~----~~~-------------------------------------~g~~~~~~~~~ 432 (549)
.++|...+.||+|+||+||+|+... +.. ++++.+
T Consensus 23 p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~----- 97 (304)
T 3ubd_A 23 PSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQT----- 97 (304)
T ss_dssp GGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEE-----
T ss_pred ccccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-----
Confidence 3679999999999999999998632 111 455555
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++..++|||||++|+|.++++..+ .+++.....++.|++.||+|||
T Consensus 98 ~~~~~ivmEy~~gg~L~~~l~~~~------~l~e~~~~~~~~qi~~aL~ylH 143 (304)
T 3ubd_A 98 EGKLYLILDFLRGGDLFTRLSKEV------MFTEEDVKFYLAELALALDHLH 143 (304)
T ss_dssp TTEEEEEECCCTTCEEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998654 6899999999999999999999
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-15 Score=154.98 Aligned_cols=83 Identities=13% Similarity=0.272 Sum_probs=68.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
...++|...+.||+|+||.||+|.+.++.. ++++. .+..+
T Consensus 185 i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~------~~~~~ 258 (454)
T 1qcf_A 185 IPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT------KEPIY 258 (454)
T ss_dssp CCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEEC------SSSCE
T ss_pred echHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEe------CCccE
Confidence 466788889999999999999999875432 45543 35689
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|||||++|+|.++++... ...+++..++.++.|||+||+|||
T Consensus 259 lv~e~~~~g~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~LH 301 (454)
T 1qcf_A 259 IITEFMAKGSLLDFLKSDE----GSKQPLPKLIDFSAQIAEGMAFIE 301 (454)
T ss_dssp EEECCCTTCBHHHHHHSHH----HHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998542 235788899999999999999999
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-14 Score=126.22 Aligned_cols=114 Identities=12% Similarity=0.048 Sum_probs=97.5
Q ss_pred cccCCCCCCEeecccccccccCCccccccc-CccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCC
Q 039925 76 KVGRLFRLEYLLLANNHFSGKIPANLSHCS-NLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLR 154 (549)
Q Consensus 76 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 154 (549)
.+.++.+|++|++++|.++ .+|. +..+. +| ++|++++|.+++. ..|..+++|++|++++|.+++..+..+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L-~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQF-DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCC-SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCC-CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 5678899999999999999 5665 55555 89 9999999999875 6899999999999999999965555568999
Q ss_pred CCCEEecccCcceecccc--cccccc-cceeeCCCCcCcccCchh
Q 039925 155 SLFYDNINRNEFSGLIPS--FIFNIS-LKWNFLPENSFTGNLPLE 196 (549)
Q Consensus 155 ~L~~L~L~~n~l~~~~p~--~~~~l~-L~~L~l~~n~l~~~~p~~ 196 (549)
+|++|++++|.+. .+|. .+..++ |+.|++++|.++ .+|..
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~ 131 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHY 131 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhH
Confidence 9999999999996 4555 788888 999999999998 56664
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-14 Score=146.34 Aligned_cols=87 Identities=17% Similarity=0.259 Sum_probs=68.9
Q ss_pred ccccCcCCCccccCceecEEEEEeCC--------Cc-e------------------------------------eEEEec
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE--------KW-T------------------------------------AGYSEG 427 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~--------~~-~------------------------------------~g~~~~ 427 (549)
..++|...+.||+|+||.||+|++.+ +. + +++|..
T Consensus 79 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 158 (370)
T 2psq_A 79 PRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 158 (370)
T ss_dssp CGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS
T ss_pred cHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc
Confidence 45678888999999999999998631 11 1 466665
Q ss_pred cccCCCceEEEEEeecCCCCcccccccCCCC----------CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 428 TDFKGIDFKAVVFDYMQNRSLEDWPYQSNNK----------LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 428 ~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~----------~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++..... .....++|..++.++.|+++||+|||
T Consensus 159 -----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH 220 (370)
T 2psq_A 159 -----DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA 220 (370)
T ss_dssp -----SSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999864310 11245899999999999999999999
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-14 Score=146.54 Aligned_cols=143 Identities=20% Similarity=0.297 Sum_probs=101.2
Q ss_pred cCcCCCccccCceecEEEEEeCCC--c---e-----------------------------------eEEEeccccCCCce
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEK--W---T-----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~--~---~-----------------------------------~g~~~~~~~~~~~~ 435 (549)
.|...+.||+|+||.||+|++.+. . + +++|.. ..+.
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~~ 165 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR----SEGS 165 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECC----CSSC
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEc----CCCC
Confidence 355667899999999999987321 1 1 455543 1456
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh-----------------------------cc
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR-----------------------------VK 486 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH-----------------------------~~ 486 (549)
.++||||+++|+|.++++... ..+++..+..++.|+++||+||| ..
T Consensus 166 ~~lv~e~~~~g~L~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~ 240 (373)
T 3c1x_A 166 PLVVLPYMKHGDLRNFIRNET-----HNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLAR 240 (373)
T ss_dssp CEEEEECCTTCBHHHHHHCTT-----CCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC----
T ss_pred eEEEEECCCCCCHHHHHhhcc-----cCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeeccccc
Confidence 789999999999999998643 46889999999999999999999 00
Q ss_pred ---------------------ccCCcc------------------eeeeccCcc--------------------cchHHH
Q 039925 487 ---------------------MALPEK------------------VMEIVESSL--------------------LLEIED 507 (549)
Q Consensus 487 ---------------------~~~~~~------------------~~~~~~~~~--------------------~~~~~~ 507 (549)
...|+. +.+++..+. ...+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~p~~ 320 (373)
T 3c1x_A 241 DMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEY 320 (373)
T ss_dssp -----------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTCCCCCCTT
T ss_pred cccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCCCCCCCCC
Confidence 000000 001111000 000133
Q ss_pred HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhhhhcc
Q 039925 508 CLVSVLTIGILCSVESPSERMEKPYIVSKLSHARENVACN 547 (549)
Q Consensus 508 ~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~~~~~ 547 (549)
++.++.+++.+||+.+|++||++.||++.|+++...+.+.
T Consensus 321 ~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~~ 360 (373)
T 3c1x_A 321 CPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 360 (373)
T ss_dssp CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSC
T ss_pred CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcccc
Confidence 5677899999999999999999999999999998765543
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=99.49 E-value=8.8e-15 Score=140.17 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=62.5
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+|+... +.. ++++.+ ++.
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-----~~~ 87 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKS-----KDE 87 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SSE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-----CCE
Confidence 579999999999999999998643 332 455555 778
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+ +|+|.+++.... .+++.....++.|++.||+|||
T Consensus 88 ~~ivmEy~-~g~L~~~l~~~~------~l~e~~~~~~~~qi~~al~ylH 129 (275)
T 3hyh_A 88 IIMVIEYA-GNELFDYIVQRD------KMSEQEARRFFQQIISAVEYCH 129 (275)
T ss_dssp EEEEEECC-CEEHHHHHHHSC------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCC-CCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999 689999998653 6899999999999999999999
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-14 Score=139.95 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=67.9
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce---------------------------------eEEEeccccCCCceEEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
..++|...+.||+|+||.||+|++.+..+ ++++.... ......++|
T Consensus 22 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-~~~~~~~lv 100 (322)
T 3soc_A 22 QSMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGT-SVDVDLWLI 100 (322)
T ss_dssp TTEEEEEEEEEECSTTCEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEEEE
T ss_pred chhhchhhheecccCceEEEEEEECCCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCC-CCCceEEEE
Confidence 45678889999999999999999876544 45554411 112346999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.++++.. .++|..+..++.|+++||+|||
T Consensus 101 ~e~~~~g~L~~~l~~~-------~~~~~~~~~i~~qi~~al~~LH 138 (322)
T 3soc_A 101 TAFHEKGSLSDFLKAN-------VVSWNELCHIAETMARGLAYLH 138 (322)
T ss_dssp EECCTTCBHHHHHHHC-------CBCHHHHHHHHHHHHHHHHHHT
T ss_pred EecCCCCCHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999754 3899999999999999999999
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-14 Score=139.46 Aligned_cols=83 Identities=22% Similarity=0.321 Sum_probs=67.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
...++|...+.||+|+||.||+|.+.++.. ++++.. ....+
T Consensus 21 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 95 (283)
T 3gen_A 21 IDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK-----QRPIF 95 (283)
T ss_dssp CCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECS-----SSSEE
T ss_pred CCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEec-----CCCeE
Confidence 456678888999999999999999876532 466655 67889
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 96 lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~lH 137 (283)
T 3gen_A 96 IITEYMANGCLLNYLREMR-----HRFQTQQLLEMCKDVCEAMEYLE 137 (283)
T ss_dssp EEECCCTTCBHHHHHHCGG-----GCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccCCCcHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998643 45899999999999999999999
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-14 Score=145.08 Aligned_cols=88 Identities=23% Similarity=0.329 Sum_probs=70.9
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC------c-e-----------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK------W-T-----------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~------~-~-----------------------------------~g~~~~~~ 429 (549)
...++|...+.||+|+||.||+|+..+. . + ++++..
T Consensus 44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-- 121 (343)
T 1luf_A 44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV-- 121 (343)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS--
T ss_pred ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc--
Confidence 5678899999999999999999997531 1 1 566666
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCC------------------CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNK------------------LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~------------------~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++..... .....+++..++.++.|+++||+|||
T Consensus 122 ---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH 191 (343)
T 1luf_A 122 ---GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS 191 (343)
T ss_dssp ---SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999764210 01256899999999999999999999
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-14 Score=140.38 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=70.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..++|...+.||+|+||.||+|.+.++.. ++++.. ....++
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~~l 80 (268)
T 3sxs_A 6 KREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSK-----EYPIYI 80 (268)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECS-----SSSEEE
T ss_pred chhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEcc-----CCceEE
Confidence 45678888999999999999999876642 466655 678899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 81 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~lH 121 (268)
T 3sxs_A 81 VTEYISNGCLLNYLRSHG-----KGLEPSQLLEMCYDVCEGMAFLE 121 (268)
T ss_dssp EEECCTTCBHHHHHHHHG-----GGCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEccCCCcHHHHHHHcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998643 45899999999999999999999
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=122.95 Aligned_cols=105 Identities=15% Similarity=0.207 Sum_probs=72.0
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeec
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKE 139 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (549)
+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|..+++| ++|+|++|+|++..+..|..+++|++|+|++
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L-~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQL-TRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-SEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccC-CEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45666666666 5665543 667777777777775556667777777 7777777777766666667777777777777
Q ss_pred ceeeeeCCccccCCCCCCEEecccCccee
Q 039925 140 NSLEGKFPNTLSNLRSLFYDNINRNEFSG 168 (549)
Q Consensus 140 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 168 (549)
|++++..+..|..+++|++|+|++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 77775555567777777777777777653
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=9.5e-15 Score=151.63 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=68.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
...++|...+.||+|+||.||+|.+.++.. +|++. .+..+
T Consensus 181 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~------~~~~~ 254 (452)
T 1fmk_A 181 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS------EEPIY 254 (452)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC------SSSCE
T ss_pred cChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEc------CCceE
Confidence 456678888999999999999999876532 45554 35679
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|||||++|+|.++++... ...+++..++.++.|+|+||+|||
T Consensus 255 iv~e~~~~gsL~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~LH 297 (452)
T 1fmk_A 255 IVTEYMSKGSLLDFLKGET----GKYLRLPQLVDMAAQIASGMAYVE 297 (452)
T ss_dssp EEECCCTTCBHHHHHSHHH----HTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEehhhcCCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998532 235889999999999999999999
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=5.8e-15 Score=143.50 Aligned_cols=81 Identities=20% Similarity=0.189 Sum_probs=69.5
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~ 433 (549)
..++|...+.||+|+||+||+|+... +.. ++++.+ +
T Consensus 30 ~~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----~ 104 (311)
T 4aw0_A 30 RPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD-----D 104 (311)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----S
T ss_pred CccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-----C
Confidence 34689999999999999999999753 332 455665 7
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++|||||++|+|.++++..+ .+++.....++.||+.||+|||
T Consensus 105 ~~~yivmEy~~gG~L~~~i~~~~------~l~e~~~~~~~~qi~~al~ylH 149 (311)
T 4aw0_A 105 EKLYFGLSYAKNGELLKYIRKIG------SFDETCTRFYTAEIVSALEYLH 149 (311)
T ss_dssp SEEEEEECCCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998654 6899999999999999999999
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-14 Score=142.90 Aligned_cols=85 Identities=26% Similarity=0.300 Sum_probs=71.0
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce------------------------------------eEEEeccccCCCce
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------------------~g~~~~~~~~~~~~ 435 (549)
...++|...+.||+|+||.||+|++.+..+ ++++.. .+.
T Consensus 34 i~~~~y~i~~~lG~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~ 108 (309)
T 3p86_A 34 IPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQ-----PPN 108 (309)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-----TTC
T ss_pred CChhHceeeeEeecCCCeEEEEEEECCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----CCc
Confidence 456788889999999999999998865444 466655 677
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... ....+++..++.++.|+++||+|||
T Consensus 109 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~i~~qi~~aL~~LH 154 (309)
T 3p86_A 109 LSIVTEYLSRGSLYRLLHKSG---AREQLDERRRLSMAYDVAKGMNYLH 154 (309)
T ss_dssp CEEEEECCTTCBHHHHHHSTT---HHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCcHHHHHhhcC---CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998643 1234899999999999999999999
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-14 Score=145.03 Aligned_cols=88 Identities=24% Similarity=0.412 Sum_probs=70.0
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC------c-e-----------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK------W-T-----------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~------~-~-----------------------------------~g~~~~~~ 429 (549)
...++|...+.||+|+||.||+|++.+. . + ++++..
T Consensus 68 ~~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-- 145 (367)
T 3l9p_A 68 VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQ-- 145 (367)
T ss_dssp CCGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS--
T ss_pred cCHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEec--
Confidence 3456788889999999999999996531 1 1 466655
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCC-CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNK-LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~-~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.++++..... .....+++..++.++.|+++||+|||
T Consensus 146 ---~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH 198 (367)
T 3l9p_A 146 ---SLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE 198 (367)
T ss_dssp ---SSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999865411 12346899999999999999999999
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-14 Score=139.39 Aligned_cols=82 Identities=23% Similarity=0.365 Sum_probs=64.9
Q ss_pred cccCcCCCccccCceecEEEEEeCCCc-----e-----------------------------------eEEEeccccCCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKW-----T-----------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~-----~-----------------------------------~g~~~~~~~~~~ 433 (549)
...|...+.||+|+||.||+|++.+.. + +++|.. ..
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~ 99 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR----SE 99 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC----SS
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEc----CC
Confidence 345777889999999999999874322 1 355443 14
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++|+|.++++... ..+++..+..++.|+++||+|||
T Consensus 100 ~~~~~v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~ql~~~l~~lH 145 (298)
T 3f66_A 100 GSPLVVLPYMKHGDLRNFIRNET-----HNPTVKDLIGFGLQVAKGMKYLA 145 (298)
T ss_dssp SCCEEEEECCTTCBHHHHHHCTT-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999997543 46789999999999999999999
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-15 Score=139.66 Aligned_cols=135 Identities=17% Similarity=0.143 Sum_probs=113.7
Q ss_pred ecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccC
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIG 127 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~ 127 (549)
.+|..|..+++|++|+|++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++| ++|++++|++++ +| .+.
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L-~~L~L~~N~l~~-l~-~~~ 112 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL-EELWISYNQIAS-LS-GIE 112 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC-SEEEEEEEECCC-HH-HHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC-CEEECcCCcCCc-CC-ccc
Confidence 344489999999999999999995 77 8999999999999999999 789888888999 999999999986 44 688
Q ss_pred CCCCCCEEEeecceeeeeCC-ccccCCCCCCEEecccCcceeccccc----------ccccc-cceeeCCCCcCc
Q 039925 128 NPSAIQVMIFKENSLEGKFP-NTLSNLRSLFYDNINRNEFSGLIPSF----------IFNIS-LKWNFLPENSFT 190 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~----------~~~l~-L~~L~l~~n~l~ 190 (549)
.+++|++|++++|.++...+ ..+..+++|++|++++|.+.+..|.. +..++ |+.|+ +|.++
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 89999999999999984322 47899999999999999998766542 55666 77765 55444
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.9e-14 Score=138.81 Aligned_cols=86 Identities=23% Similarity=0.325 Sum_probs=68.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce---------------------------------eEEEeccccCCCceEEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------~g~~~~~~~~~~~~~~l 438 (549)
...++|...+.||+|+||.||+|++.+..+ ++.+......+....++
T Consensus 10 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~l 89 (336)
T 3g2f_A 10 LDLDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLL 89 (336)
T ss_dssp CCTTSEEEEEEEEECSSEEEEEEEETTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEE
T ss_pred cChHHhheeeecccCCCeEEEEEEECCeEEEEEEeeccchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEE
Confidence 345678889999999999999998865444 33333322333556789
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.++++... .+|..+..++.|+++||+|||
T Consensus 90 v~e~~~~g~L~~~l~~~~-------~~~~~~~~i~~qi~~~L~~LH 128 (336)
T 3g2f_A 90 VMEYYPNGSLXKYLSLHT-------SDWVSSCRLAHSVTRGLAYLH 128 (336)
T ss_dssp EECCCTTCBHHHHHHHCC-------BCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCcHHHHHhhcc-------cchhHHHHHHHHHHHHHHHHH
Confidence 999999999999997653 588999999999999999999
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-14 Score=141.58 Aligned_cols=82 Identities=23% Similarity=0.466 Sum_probs=67.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc------e-----------------------------------eEEEeccccC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW------T-----------------------------------AGYSEGTDFK 431 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~------~-----------------------------------~g~~~~~~~~ 431 (549)
..+.|...+.||+|+||.||+|.+.... + ++++..
T Consensus 42 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---- 117 (333)
T 1mqb_A 42 HPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK---- 117 (333)
T ss_dssp CTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS----
T ss_pred ChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEec----
Confidence 4456777889999999999999874321 1 456655
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... ..+++..++.++.|+++||+|||
T Consensus 118 -~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH 164 (333)
T 1mqb_A 118 -YKPMMIITEYMENGALDKFLREKD-----GEFSVLQLVGMLRGIAAGMKYLA 164 (333)
T ss_dssp -SSSEEEEEECCTTEEHHHHHHHTT-----TCSCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcEEEEeCCCCCcHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998643 46899999999999999999999
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-14 Score=138.96 Aligned_cols=154 Identities=24% Similarity=0.333 Sum_probs=102.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-----e------------------------------------eEEEecccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-----T------------------------------------AGYSEGTDF 430 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-----~------------------------------------~g~~~~~~~ 430 (549)
...++|...+.||+|+||.||+|.+.... + ++++.....
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 110 (313)
T 3brb_A 31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS 110 (313)
T ss_dssp CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC---
T ss_pred cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc
Confidence 45678889999999999999999864321 1 455544221
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhhcc------------------------
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLRVK------------------------ 486 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH~~------------------------ 486 (549)
.+....++||||+++|+|.+++...........+++..++.++.|+++||.|||..
T Consensus 111 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kl~D 190 (313)
T 3brb_A 111 QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVAD 190 (313)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCEEECS
T ss_pred cCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEEee
Confidence 11234599999999999999985432112345789999999999999999999900
Q ss_pred ------------------------ccCCc------------------ceeeecc-Ccc-------------------cch
Q 039925 487 ------------------------MALPE------------------KVMEIVE-SSL-------------------LLE 504 (549)
Q Consensus 487 ------------------------~~~~~------------------~~~~~~~-~~~-------------------~~~ 504 (549)
...|+ .+.+++. ... ...
T Consensus 191 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~ 270 (313)
T 3brb_A 191 FGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRLKQ 270 (313)
T ss_dssp CSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCC
T ss_pred cCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHcCCCCCC
Confidence 00000 0001111 000 000
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhhhh
Q 039925 505 IEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHARENVA 545 (549)
Q Consensus 505 ~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~~~ 545 (549)
+..++.++.+++.+||+.+|++||++.+|++.|+++..+++
T Consensus 271 ~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp 311 (313)
T 3brb_A 271 PEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLP 311 (313)
T ss_dssp BTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred CccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence 12345678899999999999999999999999999987765
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-14 Score=137.02 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=69.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..++|...+.||+|+||.||+|.+.++.. ++++.. .+..++
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~l 80 (267)
T 3t9t_A 6 DPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-----QAPICL 80 (267)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECS-----SSSCEE
T ss_pred chhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcc-----CCCeEE
Confidence 34678888999999999999999865532 466665 677899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.++++... ..+++..+..++.|+++||+|||
T Consensus 81 v~e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH 121 (267)
T 3t9t_A 81 VTEFMEHGCLSDYLRTQR-----GLFAAETLLGMCLDVCEGMAYLE 121 (267)
T ss_dssp EECCCTTCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCcHHHHHhhCc-----ccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998643 46889999999999999999999
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=122.86 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=94.3
Q ss_pred CCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccce
Q 039925 31 CQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110 (549)
Q Consensus 31 c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~ 110 (549)
|+|..+.|+.. +++ .+|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++| ++
T Consensus 9 C~~~~l~~s~n--~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L-~~ 82 (170)
T 3g39_A 9 CSGTTVDCSGK--SLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL-TQ 82 (170)
T ss_dssp EETTEEECTTS--CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-CE
T ss_pred cCCCEEEeCCC--CcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC-CE
Confidence 68999999753 343 5777664 899999999999997778899999999999999999996556667899999 99
Q ss_pred eeecccccccccccccCCCCCCCEEEeecceee
Q 039925 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLE 143 (549)
Q Consensus 111 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 143 (549)
|+|++|+|++..+..|..+++|++|+|++|.+.
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 999999999888888999999999999999987
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-14 Score=137.25 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=66.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-----e-----------------------------------eEEEeccccC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-----T-----------------------------------AGYSEGTDFK 431 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-----~-----------------------------------~g~~~~~~~~ 431 (549)
...+.|...+.||+|+||.||+|...... + ++++.
T Consensus 12 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~----- 86 (281)
T 1mp8_A 12 IQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT----- 86 (281)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-----
T ss_pred EehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-----
Confidence 34567888899999999999999875321 1 34443
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++... ..+++..+..++.|+++||+|||
T Consensus 87 -~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH 133 (281)
T 1mp8_A 87 -ENPVWIIMELCTLGELRSFLQVRK-----YSLDLASLILYAYQLSTALAYLE 133 (281)
T ss_dssp -SSSCEEEEECCTTEEHHHHHHHTT-----TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred -cCccEEEEecCCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999998543 46899999999999999999999
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=121.59 Aligned_cols=104 Identities=18% Similarity=0.278 Sum_probs=80.3
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeec
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKE 139 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (549)
+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|..+++| ++|+|++|+|++..+..|.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNL-QQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCC-CEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56788888886 6776654 778888888888886667778888888 8888888888876666677888888888888
Q ss_pred ceeeeeCCccccCCCCCCEEecccCcce
Q 039925 140 NSLEGKFPNTLSNLRSLFYDNINRNEFS 167 (549)
Q Consensus 140 n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 167 (549)
|+|++..+..|..+++|++|+|++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8888544445777888888888888776
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-14 Score=140.00 Aligned_cols=81 Identities=22% Similarity=0.377 Sum_probs=66.4
Q ss_pred ccccCcCCCccccCceecEEEEEeCCC-ce----------------------------------------eEEEeccccC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEK-WT----------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~----------------------------------------~g~~~~~~~~ 431 (549)
..++|...+.||+|+||.||+|++... .. +++|..
T Consensus 13 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---- 88 (327)
T 3poz_A 13 KETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT---- 88 (327)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEES----
T ss_pred CHHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec----
Confidence 456788899999999999999986422 10 455654
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++|+||+++|+|.++++... ..+++..++.++.|+++||+|||
T Consensus 89 --~~~~~v~e~~~~g~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~LH 134 (327)
T 3poz_A 89 --STVQLITQLMPFGCLLDYVREHK-----DNIGSQYLLNWCVQIAKGMNYLE 134 (327)
T ss_dssp --SSEEEEEECCTTCBHHHHHHHST-----TSCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCeEEEEEecCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHh
Confidence 34789999999999999998654 46899999999999999999999
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-14 Score=136.98 Aligned_cols=84 Identities=21% Similarity=0.364 Sum_probs=70.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce-----------------------------------eEEEeccccCCCceE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
...++|...+.||+|+||.||+|....... ++++.. ....
T Consensus 10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~ 84 (288)
T 3kfa_A 10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-----EPPF 84 (288)
T ss_dssp CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECS-----SSSE
T ss_pred ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEcc-----CCCE
Confidence 356778888999999999999999864322 466665 6778
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.++++... ...+++..+..++.++++||+|||
T Consensus 85 ~~v~e~~~~~~L~~~~~~~~----~~~~~~~~~~~i~~~i~~~l~~lH 128 (288)
T 3kfa_A 85 YIITEFMTYGNLLDYLRECN----RQEVSAVVLLYMATQISSAMEYLE 128 (288)
T ss_dssp EEEEECCTTEEHHHHHHHCC----TTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHhcc----cCCccHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998643 356899999999999999999999
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-14 Score=141.11 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=66.5
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce--------------------------------eEEEeccccCCCceEEEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
..++|...+.||+|+||.||+|.+.+..+ +|++. +..++||
T Consensus 6 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-------~~~~lv~ 78 (307)
T 2eva_A 6 DYKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACL-------NPVCLVM 78 (307)
T ss_dssp CGGGEEEEEEEECCSSSEEEEEEETTEEEEEEECSSTTHHHHHHHHHHHHHHCCCTTBCCEEEBCT-------TTTEEEE
T ss_pred CHhHeeeeeEeecCCCceEEEEEECCeeEEEEEecChhHHHHHHHHHHHHhcCCCCCcCeEEEEEc-------CCcEEEE
Confidence 45678888999999999999999876544 23332 3478999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.++++... ....+++...+.++.|+++||+|||
T Consensus 79 e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~~qi~~~l~~LH 119 (307)
T 2eva_A 79 EYAEGGSLYNVLHGAE---PLPYYTAAHAMSWCLQCSQGVAYLH 119 (307)
T ss_dssp ECCTTCBHHHHHHCSS---SEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHhccC---CCCccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998654 2235788889999999999999999
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-14 Score=143.75 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=69.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC---------ce------------------------------------eEEEe
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK---------WT------------------------------------AGYSE 426 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~---------~~------------------------------------~g~~~ 426 (549)
...+.|...+.||+|+||.||+|+..+. .+ ++++.
T Consensus 66 i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~ 145 (382)
T 3tt0_A 66 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT 145 (382)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred cchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeec
Confidence 4567888899999999999999986321 01 46666
Q ss_pred ccccCCCceEEEEEeecCCCCcccccccCCCC----------CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 427 GTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNK----------LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 427 ~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~----------~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
. .+..++||||+++|+|.+++...... .....+++..+..++.|+++||+|||
T Consensus 146 ~-----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 208 (382)
T 3tt0_A 146 Q-----DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA 208 (382)
T ss_dssp S-----SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred c-----CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 5 67789999999999999999864310 11246899999999999999999999
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=134.68 Aligned_cols=220 Identities=12% Similarity=0.025 Sum_probs=158.6
Q ss_pred CCCCCEEEccCCcce--------------------ecCCccccC--------CCCCCEeecccccccccCCcccccccCc
Q 039925 56 FGYLRFINLVDNNFR--------------------GEIPEKVGR--------LFRLEYLLLANNHFSGKIPANLSHCSNL 107 (549)
Q Consensus 56 l~~L~~L~L~~n~l~--------------------~~~p~~~~~--------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 107 (549)
+++|++|||++|+|. ..-+..|.+ +++|+.|+|.+ .++..-+.+|..|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 788999999999988 222346778 99999999999 8885555679999999
Q ss_pred cceeeecccccccccccccCCCCCCCEEEeeccee----eeeCCccccCCCCCC--------------------------
Q 039925 108 LTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSL----EGKFPNTLSNLRSLF-------------------------- 157 (549)
Q Consensus 108 ~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~p~~~~~l~~L~-------------------------- 157 (549)
+.|++++|.+....+.+|..+.++..+.+..+.. ...-...|.++.+|+
T Consensus 127 -~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 127 -KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp -CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred -ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 9999999999888888999888887776655322 111222344444444
Q ss_pred EEecccCcceecccccc-cccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEcccccc
Q 039925 158 YDNINRNEFSGLIPSFI-FNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQI 235 (549)
Q Consensus 158 ~L~L~~n~l~~~~p~~~-~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l 235 (549)
.+.+.++-.. .....+ ..++ |+.+++++|+++ .+|...+..++ +|+.+++.+| +
T Consensus 206 ~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~---------------------~L~~l~l~~n-i 261 (329)
T 3sb4_A 206 FLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKK---------------------YLLKIKLPHN-L 261 (329)
T ss_dssp EEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCT---------------------TCCEEECCTT-C
T ss_pred eEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCC---------------------CCCEEECCcc-c
Confidence 3333222111 111111 1356 999999999988 67776554444 5666667666 6
Q ss_pred ccccChhhhhccccCcc-EEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEc
Q 039925 236 SGTITLGIKKLIFVNLY-ALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSV 308 (549)
Q Consensus 236 ~~~~~~~~~~l~~~~L~-~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 308 (549)
....+.+|.++ .+|+ .+++.+ .++ .++ +..|.++++|+.++++.|.++...+.+|.++++|+.++.
T Consensus 262 ~~I~~~aF~~~--~~L~~~l~l~~-~l~-~I~---~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 262 KTIGQRVFSNC--GRLAGTLELPA-SVT-AIE---FGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEECTTTTTTC--TTCCEEEEECT-TCC-EEC---TTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ceehHHHhhCC--hhccEEEEEcc-cce-EEc---hhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 65666788888 8999 999988 565 343 578999999999999999999777779999999999864
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-14 Score=140.04 Aligned_cols=81 Identities=25% Similarity=0.300 Sum_probs=66.2
Q ss_pred ccccCcCCCccccCceecEEEEEeCCC-c-----e-----------------------------------eEEEeccccC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEK-W-----T-----------------------------------AGYSEGTDFK 431 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~-----~-----------------------------------~g~~~~~~~~ 431 (549)
..++|...+.||+|+||.||+|++... . + +++|.
T Consensus 11 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~----- 85 (325)
T 3kex_A 11 KETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP----- 85 (325)
T ss_dssp CTTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-----
T ss_pred CHhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-----
Confidence 345788889999999999999987432 1 1 45443
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 86 -~~~~~~v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH 132 (325)
T 3kex_A 86 -GSSLQLVTQYLPLGSLLDHVRQHR-----GALGPQLLLNWGVQIAKGMYYLE 132 (325)
T ss_dssp -BSSEEEEEECCTTCBSHHHHHSSG-----GGSCTTHHHHHHHHHHHHHHHHH
T ss_pred -CCccEEEEEeCCCCCHHHHHHHcc-----ccCCHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999998643 46899999999999999999999
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-14 Score=137.72 Aligned_cols=80 Identities=25% Similarity=0.354 Sum_probs=62.8
Q ss_pred cCcCCCccccCceecEEEEEeCCC-c----e-----------------------------------eEEEeccccCCCce
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEK-W----T-----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~-~----~-----------------------------------~g~~~~~~~~~~~~ 435 (549)
.|...+.||+|+||.||+|++.+. . + ++++.. ....
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~~ 97 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLP----PEGL 97 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC----SSSC
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEec----CCCC
Confidence 345568899999999999986322 1 1 455544 1334
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... ..+++..+..++.|++.||+|||
T Consensus 98 ~~~v~e~~~~~~L~~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~LH 141 (298)
T 3pls_A 98 PHVLLPYMCHGDLLQFIRSPQ-----RNPTVKDLISFGLQVARGMEYLA 141 (298)
T ss_dssp CEEEECCCTTCBHHHHHHCTT-----CCCBHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecccCCCHHHHHhccc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999998643 46899999999999999999999
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.4e-14 Score=149.42 Aligned_cols=72 Identities=18% Similarity=0.330 Sum_probs=60.1
Q ss_pred ccccCceecEEEEEeCC---Cc-e-----------------------------------eEEEeccccCCCceEEEEEee
Q 039925 402 MIGQGSFGSVYKGILGE---KW-T-----------------------------------AGYSEGTDFKGIDFKAVVFDY 442 (549)
Q Consensus 402 ~lG~G~~g~Vy~~~~~~---~~-~-----------------------------------~g~~~~~~~~~~~~~~lv~ey 442 (549)
.||+|+||.||+|.+.. +. + +|+|.. +..++||||
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~------~~~~lv~E~ 416 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA------EALMLVMEM 416 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES------SSEEEEEEC
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc------CCeEEEEEe
Confidence 69999999999998742 11 1 566653 458999999
Q ss_pred cCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 443 MQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 443 ~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|++|+|.+++.... ..+++..+..++.|||+||+|||
T Consensus 417 ~~~g~L~~~l~~~~-----~~l~~~~~~~i~~qi~~~L~~LH 453 (613)
T 2ozo_A 417 AGGGPLHKFLVGKR-----EEIPVSNVAELLHQVSMGMKYLE 453 (613)
T ss_dssp CTTCBHHHHHTTCT-----TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999997543 46899999999999999999999
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-14 Score=152.37 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=68.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
...++|...+.||+|+||.||+|.+.++.. ++++. .+..+
T Consensus 264 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~------~~~~~ 337 (535)
T 2h8h_A 264 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS------EEPIY 337 (535)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC------SSSCE
T ss_pred cchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEe------eccce
Confidence 356678888999999999999999876432 45554 35679
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|||||++|+|.++++... ...+++..++.++.||++||+|||
T Consensus 338 lv~e~~~~gsL~~~l~~~~----~~~l~~~~~~~i~~qi~~~L~~LH 380 (535)
T 2h8h_A 338 IVTEYMSKGSLLDFLKGET----GKYLRLPQLVDMAAQIASGMAYVE 380 (535)
T ss_dssp EEECCCTTEEHHHHHSHHH----HTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeeehhcCCcHHHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998532 235889999999999999999999
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-14 Score=138.31 Aligned_cols=82 Identities=27% Similarity=0.417 Sum_probs=65.9
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce-----------------------------------eEEEeccccCCCceE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
...+.|...+.||+|+||.||+|++.+... ++++. ....
T Consensus 21 i~~~~y~~~~~lG~G~~g~Vy~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~------~~~~ 94 (289)
T 3og7_A 21 IPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST------APQL 94 (289)
T ss_dssp CCTTSCEEEEEEEECSSEEEEEEESSSEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC------SSSC
T ss_pred cCccceeeeeEecCCCCeEEEEEEEcCceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc------CCcc
Confidence 455678889999999999999998765322 34332 4567
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.++++... ..+++..+..++.|+++||+|||
T Consensus 95 ~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~L~~lH 137 (289)
T 3og7_A 95 AIVTQWCEGSSLYHHLHASE-----TKFEMKKLIDIARQTARGMDYLH 137 (289)
T ss_dssp EEEEECCCEEEHHHHHTTC--------CCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCcHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997543 46899999999999999999999
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.4e-14 Score=137.21 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=63.1
Q ss_pred CcCCCccccCceecEEEEEeCC-----Cc-e-----------------------------------eEEEeccccCCCce
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-----KW-T-----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-----~~-~-----------------------------------~g~~~~~~~~~~~~ 435 (549)
|...+.||+|+||.||++.+.. +. + ++++... +...
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~~ 109 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDA---GAAS 109 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET---TTTE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecC---CCce
Confidence 4788899999999999987642 11 1 4555441 1457
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++... .+++..+..++.|+++||+|||
T Consensus 110 ~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~i~~~l~~~l~~LH 151 (318)
T 3lxp_A 110 LQLVMEYVPLGSLRDYLPRH-------SIGLAQLLLFAQQICEGMAYLH 151 (318)
T ss_dssp EEEEECCCTTCBHHHHGGGS-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecccCCcHHHHHhhC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999754 3899999999999999999999
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=135.38 Aligned_cols=85 Identities=20% Similarity=0.253 Sum_probs=68.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce---------------------------------eEEEeccccCCCceEEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------~g~~~~~~~~~~~~~~l 438 (549)
...++|...+.||+|+||.||+|++.+..+ ++++.... ......++
T Consensus 34 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~-~~~~~~~l 112 (337)
T 3mdy_A 34 TIAKQIQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGT-GSWTQLYL 112 (337)
T ss_dssp THHHHCEEEEEEEEETTEEEEEEEETTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESC-GGGCEEEE
T ss_pred ccccceEEEeEeecCCCeEEEEEEECCceEEEEEEeccccchhhhHHHHHHHHhhcCCCeeeEEEEEccCC-CCCCceEE
Confidence 445789999999999999999999875544 34444410 00157899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.++++.. .+++..+..++.|++.||+|||
T Consensus 113 v~e~~~~g~L~~~l~~~-------~~~~~~~~~i~~~i~~~l~~lH 151 (337)
T 3mdy_A 113 ITDYHENGSLYDYLKST-------TLDAKSMLKLAYSSVSGLCHLH 151 (337)
T ss_dssp EECCCTTCBHHHHHHHC-------CBCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCCcHHHHhhcc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999754 4899999999999999999999
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=7e-14 Score=138.42 Aligned_cols=93 Identities=26% Similarity=0.437 Sum_probs=63.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-----e------------------------------------eEEEecccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-----T------------------------------------AGYSEGTDF 430 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-----~------------------------------------~g~~~~~~~ 430 (549)
...++|...+.||+|+||.||+|+..... + ++++.....
T Consensus 20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 99 (323)
T 3qup_A 20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA 99 (323)
T ss_dssp CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence 46678999999999999999999875431 2 344443110
Q ss_pred CC-CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KG-IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~-~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+ ....++||||+++|+|.+++...........+++..+..++.|+++||+|||
T Consensus 100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH 154 (323)
T 3qup_A 100 KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS 154 (323)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 00 1123899999999999999975432122336899999999999999999999
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-13 Score=139.68 Aligned_cols=86 Identities=17% Similarity=0.296 Sum_probs=66.6
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-------e-------------------------------------------
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-------T------------------------------------------- 421 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-------~------------------------------------------- 421 (549)
...++|...+.||+|+||.||+|.+..+. +
T Consensus 32 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv 111 (364)
T 3op5_A 32 MAAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVP 111 (364)
T ss_dssp TTCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSC
T ss_pred cCCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCC
Confidence 35568999999999999999999986542 1
Q ss_pred --eEEEeccccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 422 --AGYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 422 --~g~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++++... ..+....++||||+ +|+|.+++.... ..+++..++.++.|+++||+|||
T Consensus 112 ~~~~~~~~~-~~~~~~~~lv~e~~-g~~L~~~~~~~~-----~~l~~~~~~~i~~qi~~~l~~lH 169 (364)
T 3op5_A 112 KYWGSGLHD-KNGKSYRFMIMDRF-GSDLQKIYEANA-----KRFSRKTVLQLSLRILDILEYIH 169 (364)
T ss_dssp CEEEEEEEE-ETTEEEEEEEEECE-EEEHHHHHHHTT-----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeeeeec-cCCcceEEEEEeCC-CCCHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 2333321 01124579999999 999999998643 46999999999999999999999
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-14 Score=135.47 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=66.4
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce--------------------------------------eEEEeccccCCCc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------~g~~~~~~~~~~~ 434 (549)
..++|...+.||+|+||.||+|.+.+..+ ++++.. .+
T Consensus 5 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 79 (271)
T 3dtc_A 5 DFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLK-----EP 79 (271)
T ss_dssp CTTSEEEEEEEEEETTEEEEEEEETTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECC-----C-
T ss_pred chhheeeeeeeccCCCeEEEEEEEcCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEec-----CC
Confidence 45678889999999999999998765443 455655 66
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.++++.. .+++..+..++.|+++||+|||
T Consensus 80 ~~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~i~~~l~~~l~~lH 122 (271)
T 3dtc_A 80 NLCLVMEFARGGPLNRVLSGK-------RIPPDILVNWAVQIARGMNYLH 122 (271)
T ss_dssp -CEEEEECCTTEEHHHHHTSS-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998643 4889999999999999999999
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.1e-12 Score=127.34 Aligned_cols=241 Identities=10% Similarity=0.007 Sum_probs=167.3
Q ss_pred CCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCE
Q 039925 55 NFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQV 134 (549)
Q Consensus 55 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~ 134 (549)
.+..++.+.+.+ .++..-..+|.++ +|+.+.+..+ ++..-..+|.++ +| +.+.+.. .++...+.+|.++++|+.
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L-~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TV-QEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CC-CEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-Cc-eEEEeCC-CccEehHHHhhCcccCCe
Confidence 346677777754 3553445567664 6888888766 553334455553 57 7888875 566566677888888888
Q ss_pred EEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccc
Q 039925 135 MIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLA 213 (549)
Q Consensus 135 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~ 213 (549)
++++.|+++..-...|. ..+|+.+.+..+ +.......|.++. |+.+++..| ++ .++...+.. .+|+.+.+..++
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPNGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEETTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCCCc
Confidence 88888888744444454 578888888744 6656667777777 888888764 44 455544434 678888887655
Q ss_pred cccc--cccCcccccEEEccccccc-----cccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccC
Q 039925 214 QKLY--WSDVSTTATIIAMGGNQIS-----GTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDN 286 (549)
Q Consensus 214 ~~l~--~l~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~ 286 (549)
..+. .+..+++|+.+.+.+|.+. ...+..|.++ ++|+.++|.+ .++ .++ ...|.++++|+.++|..
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c--~~L~~l~l~~-~i~-~I~---~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC--PKLARFEIPE-SIR-ILG---QGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC--TTCCEECCCT-TCC-EEC---TTTTTTCCSCCEEEECT
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC--ccCCeEEeCC-ceE-EEh---hhhhcCCCCccEEEECc
Confidence 5443 2334468888888887765 3456778888 8999999984 455 343 46788999999999966
Q ss_pred ccccccCCccccCCCCCCEEEccCCcccc
Q 039925 287 NKLQGNLPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 287 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
| ++..-..+|.++ +|+.+++++|.+..
T Consensus 333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 333 N-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp T-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred c-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 5 665567789998 99999999998764
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.6e-14 Score=139.89 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhh
Q 039925 508 CLVSVLTIGILCSVESPSERMEKPYIVSKLSHAREN 543 (549)
Q Consensus 508 ~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~ 543 (549)
++.++.+++.+||+.+|++||++.||++.|+++...
T Consensus 321 ~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 356 (359)
T 3vhe_A 321 TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 356 (359)
T ss_dssp CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence 445788999999999999999999999999988764
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.6e-14 Score=135.94 Aligned_cols=83 Identities=14% Similarity=0.319 Sum_probs=64.9
Q ss_pred cccCcCCCccccCceecEEEEEeCC-----Cce------------------------------------eEEEeccccCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-----KWT------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-----~~~------------------------------------~g~~~~~~~~~ 432 (549)
...|...+.||+|+||.||+|++.. +.. ++++... +
T Consensus 20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---~ 96 (302)
T 4e5w_A 20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTED---G 96 (302)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----
T ss_pred hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecC---C
Confidence 3457778899999999999999632 111 3555441 1
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.++++... ..+++..+..++.|+++||+|||
T Consensus 97 ~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~i~~~l~~lH 143 (302)
T 4e5w_A 97 GNGIKLIMEFLPSGSLKEYLPKNK-----NKINLKQQLKYAVQICKGMDYLG 143 (302)
T ss_dssp -CCEEEEEECCTTCBHHHHHHHHT-----TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEeCCCCcHHHHHHhcc-----ccCCHHHHHHHHHHHHHHHHHhh
Confidence 356799999999999999996543 45899999999999999999999
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.6e-14 Score=137.66 Aligned_cols=84 Identities=21% Similarity=0.332 Sum_probs=65.4
Q ss_pred ccccCcCCCccccCceecEEEEEeC-----CCce-----------------------------------eEEEeccccCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILG-----EKWT-----------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~-----~~~~-----------------------------------~g~~~~~~~~~ 432 (549)
..++|...+.||+|+||.||+|++. ++.. .+++... .
T Consensus 39 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~ 115 (326)
T 2w1i_A 39 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSA---G 115 (326)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC-----
T ss_pred CHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEec---C
Confidence 4456788889999999999999863 2221 3444431 1
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... ..+++..++.++.|+++||+|||
T Consensus 116 ~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH 162 (326)
T 2w1i_A 116 RRNLKLIMEYLPYGSLRDYLQKHK-----ERIDHIKLLQYTSQICKGMEYLG 162 (326)
T ss_dssp --CCEEEECCCTTCBHHHHHHHST-----TSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 346799999999999999998653 46899999999999999999999
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.1e-13 Score=118.13 Aligned_cols=105 Identities=15% Similarity=0.247 Sum_probs=94.6
Q ss_pred CCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecc
Q 039925 83 LEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNIN 162 (549)
Q Consensus 83 L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 162 (549)
-+.+++++|+++ .+|..+. ++| ++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDK-QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCC-cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 478999999998 7888775 788 999999999999889999999999999999999996655667999999999999
Q ss_pred cCcceecccccccccc-cceeeCCCCcCcc
Q 039925 163 RNEFSGLIPSFIFNIS-LKWNFLPENSFTG 191 (549)
Q Consensus 163 ~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~ 191 (549)
+|++.+..+..|..++ |++|++++|.+..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9999976666799999 9999999999983
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-13 Score=148.31 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=59.6
Q ss_pred CccccCceecEEEEEeCCCc----e------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEKW----T------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~----~------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+.||+|+||.||+|.+.... + +|+|.. +..++||
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~------~~~~lv~ 448 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA------ESWMLVM 448 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES------SSEEEEE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec------CCEEEEE
Confidence 46999999999999764221 1 566643 4578999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||++|+|.++++... .+++..+..|+.||++||+|||
T Consensus 449 E~~~~g~L~~~l~~~~------~l~~~~~~~i~~qi~~~L~yLH 486 (635)
T 4fl3_A 449 EMAELGPLNKYLQQNR------HVKDKNIIELVHQVSMGMKYLE 486 (635)
T ss_dssp ECCTTEEHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHHH
T ss_pred EccCCCCHHHHHhhCC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997543 6899999999999999999999
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-13 Score=137.85 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=68.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC-c------e------------------------------------eEEEecc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK-W------T------------------------------------AGYSEGT 428 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~------~------------------------------------~g~~~~~ 428 (549)
...++|...+.||+|+||.||+|...+. . + ++++..
T Consensus 43 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~- 121 (333)
T 2i1m_A 43 FPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTH- 121 (333)
T ss_dssp CCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-
T ss_pred CCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEec-
Confidence 3567788899999999999999997431 1 1 466665
Q ss_pred ccCCCceEEEEEeecCCCCcccccccCCC--------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 429 DFKGIDFKAVVFDYMQNRSLEDWPYQSNN--------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 429 ~~~~~~~~~lv~ey~~~GsL~~~l~~~~~--------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++..... ......+++..++.++.|+++||+|||
T Consensus 122 ----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH 181 (333)
T 2i1m_A 122 ----GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA 181 (333)
T ss_dssp ----SSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999975320 001235789999999999999999999
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-14 Score=135.12 Aligned_cols=82 Identities=18% Similarity=0.332 Sum_probs=67.4
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..++|...+.||+|+||.||+|...++.. ++++. .+..++
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~~~~~~ 84 (279)
T 1qpc_A 11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT------QEPIYI 84 (279)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC------SSSCEE
T ss_pred CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEc------CCCcEE
Confidence 45678888999999999999999876532 34443 345789
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.+++.... ...+++..+..++.|+++||+|||
T Consensus 85 v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH 126 (279)
T 1qpc_A 85 ITEYMENGSLVDFLKTPS----GIKLTINKLLDMAAQIAEGMAFIE 126 (279)
T ss_dssp EEECCTTCBHHHHTTSHH----HHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHhcCC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997542 235899999999999999999999
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.8e-14 Score=137.99 Aligned_cols=85 Identities=24% Similarity=0.336 Sum_probs=68.0
Q ss_pred cccccCcCCCccccCceecEEEEEeC-----CCce-----------------------------------eEEEeccccC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG-----EKWT-----------------------------------AGYSEGTDFK 431 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-----~~~~-----------------------------------~g~~~~~~~~ 431 (549)
...++|...+.||+|+||.||+|++. ++.. .+++...
T Consensus 20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--- 96 (327)
T 3lxl_A 20 FEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGP--- 96 (327)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS---
T ss_pred hchhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecC---
Confidence 34567888899999999999999963 1211 4555431
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....++||||+++|+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 97 ~~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~al~~lH 144 (327)
T 3lxl_A 97 GRQSLRLVMEYLPSGCLRDFLQRHR-----ARLDASRLLLYSSQICKGMEYLG 144 (327)
T ss_dssp SSCEEEEEEECCTTCBHHHHHHHHG-----GGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEeecCCCCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 1567899999999999999998643 35899999999999999999999
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-13 Score=137.15 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=68.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCC--------Cc-e------------------------------------eEEEe
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE--------KW-T------------------------------------AGYSE 426 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~--------~~-~------------------------------------~g~~~ 426 (549)
...++|...+.||+|+||.||+|...+ +. + ++++.
T Consensus 32 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~ 111 (334)
T 2pvf_A 32 FPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT 111 (334)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred CCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEc
Confidence 356788889999999999999998742 11 1 46665
Q ss_pred ccccCCCceEEEEEeecCCCCcccccccCCCC----------CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 427 GTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNK----------LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 427 ~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~----------~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
. .+..++||||+++|+|.+++...... .....+++..++.++.|+++||+|||
T Consensus 112 ~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH 174 (334)
T 2pvf_A 112 Q-----DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA 174 (334)
T ss_dssp S-----SSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred c-----CCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 5 67889999999999999999865410 01235889999999999999999999
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-13 Score=131.97 Aligned_cols=85 Identities=19% Similarity=0.290 Sum_probs=67.9
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce---------------------------------eEEEeccccCCCceEEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------~g~~~~~~~~~~~~~~l 438 (549)
...++|...+.||+|+||.||+|++.+..+ ++++... .......++
T Consensus 5 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~-~~~~~~~~l 83 (301)
T 3q4u_A 5 TVARDITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTS-RHSSTQLWL 83 (301)
T ss_dssp CCGGGCEEEEEEEECSSEEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEE-ETTEEEEEE
T ss_pred cccCcEEEEEeeccCCCcEEEEEEECCEEEEEEEeccccchhhHHHHHHHHHhhccCcCeeeEEEeeccc-cCCCceeEE
Confidence 346789999999999999999999865444 3443321 111345789
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.++++.. .+++..+.+++.|+++||+|||
T Consensus 84 v~e~~~~g~L~~~l~~~-------~~~~~~~~~i~~~i~~~l~~lH 122 (301)
T 3q4u_A 84 ITHYHEMGSLYDYLQLT-------TLDTVSCLRIVLSIASGLAHLH 122 (301)
T ss_dssp EECCCTTCBHHHHHTTC-------CBCHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhccCCCHHHHHhhc-------ccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999643 4899999999999999999998
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.1e-14 Score=135.66 Aligned_cols=85 Identities=28% Similarity=0.296 Sum_probs=67.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce--------------------------------eEEEeccccCCCceEEEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
...++|...+.||+|+||.||+|...+..+ ++++.. ..+..++|
T Consensus 18 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~~~~lv 93 (278)
T 1byg_A 18 LNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGGLYIV 93 (278)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECC----C--CCEEE
T ss_pred CChhhceEEeEEecCCCceEEEEEEcCCEEEEEEecchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEc----CCCceEEE
Confidence 345678889999999999999999875443 344433 13468999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.+++.... ...+++..+..++.|+++||+|||
T Consensus 94 ~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~~i~~~l~~lH 134 (278)
T 1byg_A 94 TEYMAKGSLVDYLRSRG----RSVLGGDCLLKFSLDVCEAMEYLE 134 (278)
T ss_dssp ECCCTTEEHHHHHHHHH----HHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHhcc----cccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997543 223788899999999999999999
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-13 Score=134.83 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=68.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCC------Cc-e-----------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE------KW-T-----------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~------~~-~-----------------------------------~g~~~~~~ 429 (549)
...++|...+.||+|+||.||+|.... +. + ++++..
T Consensus 20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-- 97 (314)
T 2ivs_A 20 FPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQ-- 97 (314)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS--
T ss_pred cchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEec--
Confidence 356778888999999999999998621 11 1 466655
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCC------------------CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNK------------------LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~------------------~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++...... .....+++..+..++.|+++||+|||
T Consensus 98 ---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH 167 (314)
T 2ivs_A 98 ---DGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA 167 (314)
T ss_dssp ---SSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999864310 01234889999999999999999999
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-13 Score=136.81 Aligned_cols=88 Identities=18% Similarity=0.252 Sum_probs=67.9
Q ss_pred cccccCcCCCccccCceecEEEEEeCC----Cc---e------------------------------------eEEEecc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE----KW---T------------------------------------AGYSEGT 428 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~----~~---~------------------------------------~g~~~~~ 428 (549)
...++|...+.||+|+||.||+|+..+ +. + ++++..
T Consensus 42 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~- 120 (344)
T 1rjb_A 42 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL- 120 (344)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECS-
T ss_pred cCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEee-
Confidence 456788889999999999999999621 11 1 455555
Q ss_pred ccCCCceEEEEEeecCCCCcccccccCCCCC-----------------CCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 429 DFKGIDFKAVVFDYMQNRSLEDWPYQSNNKL-----------------KPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 429 ~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~-----------------~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++....... ....++|..++.++.|+++||+|||
T Consensus 121 ----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 189 (344)
T 1rjb_A 121 ----SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE 189 (344)
T ss_dssp ----SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999998653100 0134899999999999999999999
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.2e-13 Score=130.16 Aligned_cols=83 Identities=27% Similarity=0.368 Sum_probs=63.6
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce---------------------------------eEEEeccccCCCceEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT---------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------~g~~~~~~~~~~~~~~ 437 (549)
...+.|...+.||+|+||.||+|+... +.. ++.+.. .....+
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~----~~~~~~ 81 (296)
T 4hgt_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGA----EGDYNV 81 (296)
T ss_dssp -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEE----ETTEEE
T ss_pred ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecC----CCCceE
Confidence 456789999999999999999999643 221 233322 156789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+ +|+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 82 lv~e~~-~~~L~~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~LH 122 (296)
T 4hgt_A 82 MVMELL-GPSLEDLFNFCS-----RKFSLKTVLLLADQMISRIEYIH 122 (296)
T ss_dssp EEEECC-CCBHHHHHHHTT-----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcc-CCCHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999998543 45899999999999999999999
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-13 Score=132.76 Aligned_cols=82 Identities=18% Similarity=0.399 Sum_probs=67.1
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-----e-----------------------------------eEEEeccccC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-----T-----------------------------------AGYSEGTDFK 431 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-----~-----------------------------------~g~~~~~~~~ 431 (549)
...++|...+.||+|+||.||+|++.+.. + ++++.
T Consensus 9 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~----- 83 (281)
T 3cc6_A 9 IAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIE----- 83 (281)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEEC-----
T ss_pred ecccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEc-----
Confidence 45678999999999999999999864321 1 35443
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 84 -~~~~~~v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~i~~~l~~lH 130 (281)
T 3cc6_A 84 -EEPTWIIMELYPYGELGHYLERNK-----NSLKVLTLVLYSLQICKAMAYLE 130 (281)
T ss_dssp -SSSCEEEEECCTTCBHHHHHHHHT-----TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEecCCCCCHHHHHHhcc-----ccCCHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999997643 45889999999999999999999
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-13 Score=133.55 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=63.7
Q ss_pred cccCcCCC-ccccCceecEEEEEeCCCc----e------------------------------------eEEEeccccCC
Q 039925 394 TNEFSSSN-MIGQGSFGSVYKGILGEKW----T------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 394 ~~~~~~~~-~lG~G~~g~Vy~~~~~~~~----~------------------------------------~g~~~~~~~~~ 432 (549)
.+.|...+ .||+|+||.||+|.+.... + ++++ .
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~----- 88 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-E----- 88 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-E-----
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-C-----
Confidence 45566666 8999999999999653211 1 4555 2
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 89 ~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH 134 (291)
T 1xbb_A 89 AESWMLVMEMAELGPLNKYLQQNR------HVKDKNIIELVHQVSMGMKYLE 134 (291)
T ss_dssp SSSEEEEEECCTTEEHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHhCc------CCCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999998643 5889999999999999999999
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-13 Score=134.84 Aligned_cols=81 Identities=22% Similarity=0.377 Sum_probs=66.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCCC-ce----------------------------------------eEEEeccccC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEK-WT----------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~----------------------------------------~g~~~~~~~~ 431 (549)
..++|...+.||+|+||.||+|.+... .. +++|..
T Consensus 13 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~---- 88 (327)
T 3lzb_A 13 KETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT---- 88 (327)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES----
T ss_pred CHhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec----
Confidence 456788999999999999999997432 11 355543
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++|+||+++|+|.+++.... ..+++..++.++.|+++||+|||
T Consensus 89 --~~~~~v~~~~~~g~L~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH 134 (327)
T 3lzb_A 89 --STVQLITQLMPFGCLLDYVREHK-----DNIGSQYLLNWCVQIAKGMNYLE 134 (327)
T ss_dssp --SSEEEEECCCSSCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCceEEEEecCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHh
Confidence 34789999999999999998654 46899999999999999999999
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-13 Score=134.01 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=67.1
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce----------------------------------eEEEeccccCCCceEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
..++|...+.||+|+||.||+|+... +.. ++++.. ....+
T Consensus 8 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-----~~~~~ 82 (298)
T 1csn_A 8 VGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQE-----GLHNV 82 (298)
T ss_dssp ETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEE-----TTEEE
T ss_pred cccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCC-----CceeE
Confidence 45678889999999999999999632 222 345554 67889
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+ +|+|.++++... ..+++..+..++.|+++||+|||
T Consensus 83 lv~e~~-~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~lH 123 (298)
T 1csn_A 83 LVIDLL-GPSLEDLLDLCG-----RKFSVKTVAMAAKQMLARVQSIH 123 (298)
T ss_dssp EEEECC-CCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEec-CCCHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999998643 45899999999999999999999
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-13 Score=135.50 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=70.5
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce-----------------------------------eEEEeccccCCCceE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
...++|...+.||+|+||.||+|.+.+... ++++.. .+..
T Consensus 30 i~~~~~~~~~~lg~G~~g~V~~~~~~~~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~ 104 (319)
T 2y4i_B 30 IPFEQLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMS-----PPHL 104 (319)
T ss_dssp SCCSCEECCCBCCCSSSSEEEEEEESSSEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEEC-----SSCE
T ss_pred CCHHHeEEeeEeccCCceEEEEEEEcCeEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEec-----CCce
Confidence 456788999999999999999998764322 466666 6778
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 105 ~iv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~al~~lH 147 (319)
T 2y4i_B 105 AIITSLCKGRTLYSVVRDAK-----IVLDVNKTRQIAQEIVKGMGYLH 147 (319)
T ss_dssp EEECBCCCSEEHHHHTTSSC-----CCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecccCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998643 46899999999999999999999
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-13 Score=134.17 Aligned_cols=88 Identities=26% Similarity=0.366 Sum_probs=70.0
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce----------------------------------------eEEEeccccC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------------~g~~~~~~~~ 431 (549)
...++|...+.||+|+||.||+|+...... ++++..
T Consensus 22 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~---- 97 (327)
T 1fvr_A 22 LDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH---- 97 (327)
T ss_dssp CCGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEE----
T ss_pred ccHHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeee----
Confidence 566789999999999999999998643210 455555
Q ss_pred CCceEEEEEeecCCCCcccccccCCC----------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNN----------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~----------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++..... ......+++..++.++.|+++||+|||
T Consensus 98 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH 159 (327)
T 1fvr_A 98 -RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS 159 (327)
T ss_dssp -TTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999975420 011246899999999999999999999
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-13 Score=135.49 Aligned_cols=88 Identities=24% Similarity=0.410 Sum_probs=67.3
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC------c-e-----------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK------W-T-----------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~------~-~-----------------------------------~g~~~~~~ 429 (549)
...++|...+.||+|+||.||+|++.+. . + ++++..
T Consensus 27 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-- 104 (327)
T 2yfx_A 27 VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQ-- 104 (327)
T ss_dssp CCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS--
T ss_pred CChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcC--
Confidence 4567899999999999999999985421 1 1 466665
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCC-CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNK-LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~-~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++...... .....+++..++.++.|+++||+|||
T Consensus 105 ---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH 157 (327)
T 2yfx_A 105 ---SLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE 157 (327)
T ss_dssp ---SSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh
Confidence 66789999999999999999865411 11245889999999999999999999
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-13 Score=131.26 Aligned_cols=80 Identities=16% Similarity=0.323 Sum_probs=63.4
Q ss_pred cccCcCCC-ccccCceecEEEEEeC---CCc-e-----------------------------------eEEEeccccCCC
Q 039925 394 TNEFSSSN-MIGQGSFGSVYKGILG---EKW-T-----------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 394 ~~~~~~~~-~lG~G~~g~Vy~~~~~---~~~-~-----------------------------------~g~~~~~~~~~~ 433 (549)
.++|.... .||+|+||.||+|++. ++. + ++++. .
T Consensus 8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~ 81 (287)
T 1u59_A 8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ------A 81 (287)
T ss_dssp GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE------S
T ss_pred HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec------C
Confidence 34454444 8999999999999864 221 1 45553 4
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 82 ~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH 127 (287)
T 1u59_A 82 EALMLVMEMAGGGPLHKFLVGKR-----EEIPVSNVAELLHQVSMGMKYLE 127 (287)
T ss_dssp SSEEEEEECCTTEEHHHHHTTCT-----TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHhCC-----ccCCHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999997543 46899999999999999999999
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-13 Score=147.25 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=66.4
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc-----e-----------------------------------eEEEeccccCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW-----T-----------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-----~-----------------------------------~g~~~~~~~~~ 432 (549)
..++|...+.||+|+||.||+|.+.... + +|++.
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~------ 461 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT------ 461 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC------
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe------
Confidence 4456777889999999999999975321 1 45553
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++... ..+++..+..++.|+++||+|||
T Consensus 462 ~~~~~lv~E~~~~g~L~~~l~~~~-----~~l~~~~~~~i~~qi~~aL~~LH 508 (656)
T 2j0j_A 462 ENPVWIIMELCTLGELRSFLQVRK-----FSLDLASLILYAYQLSTALAYLE 508 (656)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTT-----TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCcHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999998543 46899999999999999999999
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-11 Score=123.22 Aligned_cols=216 Identities=13% Similarity=0.104 Sum_probs=126.9
Q ss_pred CCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEE
Q 039925 80 LFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYD 159 (549)
Q Consensus 80 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 159 (549)
+..++.+.+..+ ++..-..+|.++ +| +.+.+..+ ++.....+|.+. +|+.+.+.. .++..-+..|.++++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L-~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QI-AKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CC-SEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-Cc-cEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 456666666543 442333445553 56 77777655 554555566663 577777764 5554555667777777777
Q ss_pred ecccCcceecccccccccccceeeCCCCcCcccCchhhhhcCCCCcEeeeccccccccc--ccCcccccEEEcccccccc
Q 039925 160 NINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYW--SDVSTTATIIAMGGNQISG 237 (549)
Q Consensus 160 ~L~~n~l~~~~p~~~~~l~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~--l~~~~~L~~L~l~~n~l~~ 237 (549)
++..|.+.......|....|+.+.+..+ +. .++...+..+++|+.+.+..++..+.. +.. .+|+.+.+ .+.+..
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~l-p~~i~~ 261 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKL-PNGVTN 261 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEE-ETTCCE
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEe-CCCccE
Confidence 7777777655445555322777777643 44 455444446777777777664433321 111 36777777 344554
Q ss_pred ccChhhhhccccCccEEEcCCCcccc----cCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCC
Q 039925 238 TITLGIKKLIFVNLYALTMVKNKLSG----PIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRN 311 (549)
Q Consensus 238 ~~~~~~~~l~~~~L~~L~L~~n~l~~----~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 311 (549)
.....|.++ ++|+.+++.+|.+.. .++ +..|.++++|+.++|. +.++..-..+|.++++|+.++|..|
T Consensus 262 I~~~aF~~c--~~L~~l~l~~~~~~~~~~~~I~---~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 262 IASRAFYYC--PELAEVTTYGSTFNDDPEAMIH---PYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp ECTTTTTTC--TTCCEEEEESSCCCCCTTCEEC---TTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred EChhHhhCC--CCCCEEEeCCccccCCcccEEC---HHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 555666677 777777776665430 122 3566777777777777 3355444556777777777777444
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-13 Score=140.07 Aligned_cols=82 Identities=27% Similarity=0.385 Sum_probs=66.9
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce----------------------------------eEEEeccccCCCceE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~----------------------------------~g~~~~~~~~~~~~~ 436 (549)
...++|...+.||+|+||.||+|+... +.. ..++.. .+..
T Consensus 4 ~i~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~-----~~~~ 78 (483)
T 3sv0_A 4 RVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVE-----GDYN 78 (483)
T ss_dssp EETTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEE-----TTEE
T ss_pred CcCCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEee-----CCEE
Confidence 345789999999999999999999743 322 223333 5678
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+ +|+|.+++.... ..+++..++.|+.||+.||+|||
T Consensus 79 ~lvme~~-g~sL~~ll~~~~-----~~l~~~~~~~i~~qi~~aL~yLH 120 (483)
T 3sv0_A 79 VLVMDLL-GPSLEDLFNFCS-----RKLSLKTVLMLADQMINRVEFVH 120 (483)
T ss_dssp EEEEECC-CCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECC-CCCHHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999998533 46999999999999999999999
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.1e-14 Score=135.98 Aligned_cols=82 Identities=21% Similarity=0.384 Sum_probs=68.4
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc---------e----------------------------------eEEEeccc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW---------T----------------------------------AGYSEGTD 429 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~---------~----------------------------------~g~~~~~~ 429 (549)
..++|...+.||+|+||.||+|+..... + ++++..
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-- 83 (289)
T 4fvq_A 6 RNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVC-- 83 (289)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECC--
T ss_pred chhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEe--
Confidence 4567888899999999999999864311 1 566665
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 84 ---~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~L~~LH 130 (289)
T 4fvq_A 84 ---GDENILVQEFVKFGSLDTYLKKNK-----NCINILWKLEVAKQLAAAMHFLE 130 (289)
T ss_dssp ---TTCCEEEEECCTTCBHHHHHHHTG-----GGCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCEEEEECCCCCCHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHh
Confidence 677899999999999999998653 35889999999999999999999
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.6e-13 Score=130.64 Aligned_cols=83 Identities=27% Similarity=0.368 Sum_probs=66.6
Q ss_pred cccccCcCCCccccCceecEEEEEeC-CCce---------------------------------eEEEeccccCCCceEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG-EKWT---------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~---------------------------------~g~~~~~~~~~~~~~~ 437 (549)
...++|...+.||+|+||.||+|+.. ++.. ++.+.. .....+
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~----~~~~~~ 81 (296)
T 3uzp_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGA----EGDYNV 81 (296)
T ss_dssp EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEE----ETTEEE
T ss_pred eeccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccC----CCCceE
Confidence 45678999999999999999999963 3322 233322 156779
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+ +|+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 82 lv~e~~-~~~L~~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH 122 (296)
T 3uzp_A 82 MVMELL-GPSLEDLFNFCS-----RKFSLKTVLLLADQMISRIEYIH 122 (296)
T ss_dssp EEEECC-CCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEec-CCCHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999997433 46899999999999999999999
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-13 Score=133.79 Aligned_cols=88 Identities=19% Similarity=0.210 Sum_probs=68.5
Q ss_pred cccccCcCCCccccCceecEEEEEeCC------Cc-e------------------------------------eEEEecc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE------KW-T------------------------------------AGYSEGT 428 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~------~~-~------------------------------------~g~~~~~ 428 (549)
...++|...+.||+|+||.||+|++.+ +. + ++++..
T Consensus 20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~- 98 (313)
T 1t46_A 20 FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTI- 98 (313)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-
T ss_pred cChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEec-
Confidence 345678888999999999999998521 11 1 456655
Q ss_pred ccCCCceEEEEEeecCCCCcccccccCCCC------------CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 429 DFKGIDFKAVVFDYMQNRSLEDWPYQSNNK------------LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 429 ~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~------------~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++...... .....+++..+..++.|+++||+|||
T Consensus 99 ----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH 162 (313)
T 1t46_A 99 ----GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA 162 (313)
T ss_dssp ----SSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999865310 01235899999999999999999999
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-13 Score=132.75 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=67.1
Q ss_pred cccccCcCCCccccCceecEEEEEeC-CCce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG-EKWT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--------------------------------------~g~~~~~~~~~ 432 (549)
...++|...+.||+|+||.||+|... ++.. ++++..
T Consensus 29 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~----- 103 (310)
T 2wqm_A 29 NTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE----- 103 (310)
T ss_dssp SSGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----
T ss_pred ccccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----
Confidence 34567889999999999999999864 2221 466665
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... .....+++..+..++.++++||+|||
T Consensus 104 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~qi~~~l~~LH 153 (310)
T 2wqm_A 104 DNELNIVLELADAGDLSRMIKHFK--KQKRLIPERTVWKYFVQLCSALEHMH 153 (310)
T ss_dssp TTEEEEEEECCCSCBHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEecCCCCCHHHHHHHhc--ccccCCCHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999987422 01246889999999999999999999
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-13 Score=135.04 Aligned_cols=88 Identities=22% Similarity=0.345 Sum_probs=69.0
Q ss_pred cccccCcCCCccccCceecEEEEEeCC------Cc-e-----------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE------KW-T-----------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~------~~-~-----------------------------------~g~~~~~~ 429 (549)
.+.++|...+.||+|+||.||+|+..+ +. + ++++..
T Consensus 22 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-- 99 (322)
T 1p4o_A 22 VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ-- 99 (322)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS--
T ss_pred chhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEcc--
Confidence 466789999999999999999997652 11 1 466655
Q ss_pred cCCCceEEEEEeecCCCCcccccccCC----CCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSN----NKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~----~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.++++... .......+++..++.++.|+++||+|||
T Consensus 100 ---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH 155 (322)
T 1p4o_A 100 ---GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN 155 (322)
T ss_dssp ---SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999997532 0001235789999999999999999999
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6e-13 Score=132.70 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=67.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce---------------------------------eEEEeccccCCCceEEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
..++|...+.||+|+||.||+|++.+..+ ++++.... ......++|
T Consensus 40 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~-~~~~~~~lv 118 (342)
T 1b6c_B 40 IARTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQLWLV 118 (342)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCC-SSCCCEEEE
T ss_pred ccccEEEEeeecCCCCcEEEEEEEcCccEEEEEeCchhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccC-CccceeEEE
Confidence 45678889999999999999999865443 35554410 001278999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.++++.. .+++..++.++.|+|+||+|||
T Consensus 119 ~e~~~~g~L~~~l~~~-------~~~~~~~~~i~~~i~~~l~~lH 156 (342)
T 1b6c_B 119 SDYHEHGSLFDYLNRY-------TVTVEGMIKLALSTASGLAHLH 156 (342)
T ss_dssp ECCCTTCBHHHHHHHC-------CBCHHHHHHHHHHHHHHHHHHH
T ss_pred EeecCCCcHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999753 4899999999999999999999
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=9.4e-13 Score=130.16 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=69.5
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce-----------------------------------eEEEeccccCCCceEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
..+.|...+.||+|+||.||+|+...... ++++.. .+..+
T Consensus 3 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-----~~~~~ 77 (321)
T 1tki_A 3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFES-----MEELV 77 (321)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEE-----TTEEE
T ss_pred hhhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEec-----CCEEE
Confidence 35678888999999999999998754321 566666 67899
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++.... ..+++.....++.|+++||+|||
T Consensus 78 lv~e~~~g~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~al~~lH 119 (321)
T 1tki_A 78 MIFEFISGLDIFERINTSA-----FELNEREIVSYVHQVCEALQFLH 119 (321)
T ss_dssp EEECCCCCCBHHHHHTSSS-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997543 46899999999999999999999
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.7e-13 Score=130.93 Aligned_cols=80 Identities=13% Similarity=0.192 Sum_probs=68.1
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~ 436 (549)
.++|...+.||+|+||.||+|+... +.. ++++.. .+..
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-----~~~~ 80 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-----GNIQ 80 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEEC-----SSEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEec-----CCeE
Confidence 4678889999999999999998753 221 466665 6788
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 81 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH 122 (323)
T 3tki_A 81 YLFLEYCSGGELFDRIEPDI------GMPEPDAQRFFHQLMAGVVYLH 122 (323)
T ss_dssp EEEEECCTTEEGGGGSBTTT------BCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998543 5899999999999999999999
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-13 Score=131.23 Aligned_cols=79 Identities=19% Similarity=0.140 Sum_probs=67.1
Q ss_pred ccCcCCCccccCceecEEEEEeC-CCce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILG-EKWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+|+.. ++.. .++|.. .+.
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~-----~~~ 131 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEE-----GGI 131 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEe-----CCE
Confidence 57888889999999999999986 3332 566666 778
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+ +|+|.+++.... ..++|..+..++.|++.||+|||
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH 174 (311)
T 3p1a_A 132 LYLQTELC-GPSLQQHCEAWG-----ASLPEAQVWGYLRDTLLALAHLH 174 (311)
T ss_dssp EEEEEECC-CCBHHHHHHHHC-----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecc-CCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999 779999987653 46999999999999999999999
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=126.21 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=97.9
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~ 433 (549)
..+.|...+.||+|+||.||+|+... +.. ++++.. .
T Consensus 29 ~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-----~ 103 (286)
T 3uqc_A 29 ANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHT-----R 103 (286)
T ss_dssp TTTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----T
T ss_pred ecCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEE-----C
Confidence 34678888999999999999999864 221 455555 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh-----------------------------
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR----------------------------- 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH----------------------------- 484 (549)
+..++||||+++|+|.++++.. .......+++.|+++||+|||
T Consensus 104 ~~~~lv~e~~~g~~L~~~l~~~--------~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~~ 175 (286)
T 3uqc_A 104 AGGLVVAEWIRGGSLQEVADTS--------PSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPAT 175 (286)
T ss_dssp TEEEEEEECCCEEEHHHHHTTC--------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCCC
T ss_pred CcEEEEEEecCCCCHHHHHhcC--------CChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEeccc
Confidence 7889999999999999999632 234467889999999999999
Q ss_pred ----------------------ccccCCc-cee-------eeccCcccch---HHHHHHHHHHHHHHhccCCCCCCCCHH
Q 039925 485 ----------------------VKMALPE-KVM-------EIVESSLLLE---IEDCLVSVLTIGILCSVESPSERMEKP 531 (549)
Q Consensus 485 ----------------------~~~~~~~-~~~-------~~~~~~~~~~---~~~~~~~l~~l~~~C~~~~P~~RP~~~ 531 (549)
....+.+ ... ..+....... ..+++.++.+++.+||+.||++| ++.
T Consensus 176 ~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~ 254 (286)
T 3uqc_A 176 MPDANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SAS 254 (286)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCccC-CHH
Confidence 0001110 000 1111111110 13456788999999999999999 999
Q ss_pred HHHHHHHHhhhhh
Q 039925 532 YIVSKLSHARENV 544 (549)
Q Consensus 532 ~v~~~L~~~~~~~ 544 (549)
|+++.|+++....
T Consensus 255 el~~~L~~~~~~~ 267 (286)
T 3uqc_A 255 TLLNLMQQATAVA 267 (286)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHhccC
Confidence 9999999887543
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-13 Score=130.47 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=68.5
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCce
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~ 435 (549)
...+.|...+.||+|+||.||+|.... +.. ++++.. .+.
T Consensus 17 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~ 91 (297)
T 3fxz_A 17 DPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-----GDE 91 (297)
T ss_dssp CGGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred ChhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEE-----CCE
Confidence 456679999999999999999998633 222 466665 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++... .+++.....++.|+++||+|||
T Consensus 92 ~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH 133 (297)
T 3fxz_A 92 LWVVMEYLAGGSLTDVVTET-------CMDEGQIAAVCRECLQALEFLH 133 (297)
T ss_dssp EEEEEECCTTCBHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999754 3889999999999999999999
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-12 Score=129.51 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=75.3
Q ss_pred CCCCcceeCCCCCceEeecCccccCCCCCCEEEccC-CcceecCCccccCCCCCCEeecccccccccCCcccccccCccc
Q 039925 31 CQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVD-NNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109 (549)
Q Consensus 31 c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 109 (549)
|.|..|.|+.. .+++ .||. |..+++|++|+|++ |.|++..+..|.++++|++|+|++|+|++..|..|..+++| +
T Consensus 8 C~~~~v~~~~~-n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L-~ 83 (347)
T 2ifg_A 8 HGSSGLRCTRD-GALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL-S 83 (347)
T ss_dssp SSSSCEECCSS-CCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC-C
T ss_pred ccCCEEEcCCC-CCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCC-C
Confidence 88988988652 1344 4777 77778888888875 77776666677777778888877777776666667777777 7
Q ss_pred eeeecccccccccccccCCCCCCCEEEeecceee
Q 039925 110 KLFICETHLSGQLLDFIGNPSAIQVMIFKENSLE 143 (549)
Q Consensus 110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 143 (549)
+|+|++|+|++..+..|..++ |+.|+|.+|.+.
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred EEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777777777655555555444 666666666554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.8e-14 Score=141.35 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=48.8
Q ss_pred CCCCEEEccCCcceecCCccccC-----CCCCCEeecccccccccCCccc-ccccCccceeeeccccccccccccc----
Q 039925 57 GYLRFINLVDNNFRGEIPEKVGR-----LFRLEYLLLANNHFSGKIPANL-SHCSNLLTKLFICETHLSGQLLDFI---- 126 (549)
Q Consensus 57 ~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~~L~Ls~n~l~~~~~~~~---- 126 (549)
++|+.|+|++|.++......|.. .++|++|+|++|.++......+ ..+++| ++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L-~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA-RKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTE-EEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhc-cHhhcCCCCCCHHHHHHHHHHH
Confidence 45556666666655322222211 1456666666665543222222 223445 555555555543322222
Q ss_pred -CCCCCCCEEEeecceeee----eCCccccCCCCCCEEecccCcce
Q 039925 127 -GNPSAIQVMIFKENSLEG----KFPNTLSNLRSLFYDNINRNEFS 167 (549)
Q Consensus 127 -~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~ 167 (549)
...++|++|+|++|.++. .++..+..+++|++|+|++|.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 223445555555555442 12223344444555555555443
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-13 Score=132.02 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=67.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCC------Cce-------------------------------------eEEEecc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE------KWT-------------------------------------AGYSEGT 428 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~------~~~-------------------------------------~g~~~~~ 428 (549)
...++|...+.||+|+||.||+|++.+ +.. ++++..
T Consensus 24 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~- 102 (316)
T 2xir_A 24 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK- 102 (316)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECC-
T ss_pred cchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEec-
Confidence 456788899999999999999998532 111 345443
Q ss_pred ccCCCceEEEEEeecCCCCcccccccCCCCC----------CCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 429 DFKGIDFKAVVFDYMQNRSLEDWPYQSNNKL----------KPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 429 ~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~----------~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....++||||+++|+|.+++....... ....+++..+..++.|+++||+|||
T Consensus 103 ---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH 165 (316)
T 2xir_A 103 ---PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA 165 (316)
T ss_dssp ---TTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH
Confidence 1345899999999999999998654100 0123889999999999999999999
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=3.9e-13 Score=130.01 Aligned_cols=82 Identities=17% Similarity=0.253 Sum_probs=70.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~ 432 (549)
.+.++|...+.||+|+||.||+|....... ++++..
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----- 80 (279)
T 3fdn_A 6 WALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHD----- 80 (279)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----
T ss_pred eecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEec-----
Confidence 366789999999999999999998765431 566666
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... .+++..+..++.|+++|++|||
T Consensus 81 ~~~~~lv~e~~~~~~l~~~l~~~~------~~~~~~~~~~~~qi~~~l~~LH 126 (279)
T 3fdn_A 81 ATRVYLILEYAPLGTVYRELQKLS------KFDEQRTATYITELANALSYCH 126 (279)
T ss_dssp SSEEEEEECCCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998643 5889999999999999999999
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.9e-13 Score=131.89 Aligned_cols=89 Identities=11% Similarity=0.030 Sum_probs=66.5
Q ss_pred ccccCcCCCccccCceecEEEEEeC-CCce-----------------------------------eEEEeccccCCCceE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILG-EKWT-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
..++|...+.||+|+||.||+++.. ++.. ++++... .......
T Consensus 27 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~ 105 (317)
T 2buj_A 27 DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRE-RGAKHEA 105 (317)
T ss_dssp TTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEE-ETTEEEE
T ss_pred CCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEec-cCCCcee
Confidence 5568999999999999999999973 3322 3555420 0113577
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.+++.... .....+++..+..++.|+++||+|||
T Consensus 106 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~qi~~~L~~LH 151 (317)
T 2buj_A 106 WLLLPFFKRGTLWNEIERLK--DKGNFLTEDQILWLLLGICRGLEAIH 151 (317)
T ss_dssp EEEEECCTTCBHHHHHHHHH--TTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999997532 11356899999999999999999999
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=129.93 Aligned_cols=81 Identities=25% Similarity=0.314 Sum_probs=66.4
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce----------------------------------eEEEeccccCCCceEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
..++|...+.||+|+||.||+|+... +.. ++++.. ....+
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~-----~~~~~ 81 (330)
T 2izr_A 7 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPC-----GKYNA 81 (330)
T ss_dssp ETTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEE-----TTEEE
T ss_pred EcCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEec-----CCccE
Confidence 45688999999999999999999633 221 455555 67789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+ +|+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 82 lv~e~~-~~~L~~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~LH 122 (330)
T 2izr_A 82 MVLELL-GPSLEDLFDLCD-----RTFSLKTVLMIAIQLISRMEYVH 122 (330)
T ss_dssp EEEECC-CCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeC-CCCHHHHHHHcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999998643 46899999999999999999999
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-13 Score=130.35 Aligned_cols=86 Identities=22% Similarity=0.230 Sum_probs=70.1
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~ 432 (549)
...++|...+.||+|+||.||+|+... +.. ++++..
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~----- 82 (289)
T 1x8b_A 8 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAE----- 82 (289)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEE-----
T ss_pred cccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeec-----
Confidence 345678888999999999999999852 322 466665
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... .....+++..+..++.|+++||+|||
T Consensus 83 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~qi~~al~~lH 132 (289)
T 1x8b_A 83 DDHMLIQNEYCNGGSLADAISENY--RIMSYFKEAELKDLLLQVGRGLRYIH 132 (289)
T ss_dssp TTEEEEEEECCTTCBHHHHHHHHH--HHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEecCCCcHHHHHHhhc--ccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998542 01245899999999999999999999
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.33 E-value=5.2e-13 Score=141.93 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=69.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCceE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
..++|...+.||+|+||.||+|+... +.. ++++.. ....
T Consensus 155 il~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-----~~~~ 229 (573)
T 3uto_A 155 VLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFED-----DNEM 229 (573)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEC-----SSEE
T ss_pred CccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEE-----CCEE
Confidence 34678889999999999999999753 322 455665 7889
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|||||++|+|.++|.... ..+++.+...++.||++||+|||
T Consensus 230 ~iv~E~~~gg~L~~~i~~~~-----~~l~e~~~~~~~~qi~~al~ylH 272 (573)
T 3uto_A 230 VMIYEFMSGGELFEKVADEH-----NKMSEDEAVEYMRQVCKGLCHMH 272 (573)
T ss_dssp EEEEECCCCCBHHHHHTCTT-----SCEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCCCcHHHHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997543 46899999999999999999999
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.6e-13 Score=129.56 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=68.1
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc-e--------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW-T--------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~--------------------------------------~g~~~~~~~~~~ 433 (549)
..+.|...+.||+|+||.||+|+..... . ++++.. .
T Consensus 9 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-----~ 83 (294)
T 4eqm_A 9 INERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEE-----D 83 (294)
T ss_dssp EETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEEC-----S
T ss_pred hhccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeee-----C
Confidence 3467888899999999999999864322 1 455655 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|+|.+++.... ++++..+..++.|+++||+|||
T Consensus 84 ~~~~lv~e~~~g~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH 128 (294)
T 4eqm_A 84 DCYYLVMEYIEGPTLSEYIESHG------PLSVDTAINFTNQILDGIKHAH 128 (294)
T ss_dssp SEEEEEEECCCSCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999998653 6899999999999999999999
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-12 Score=127.08 Aligned_cols=87 Identities=21% Similarity=0.441 Sum_probs=66.8
Q ss_pred cccCcCCCccccCceecEEEEEeC-CCce-------------------------------eEEEecccc-----------
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILG-EKWT-------------------------------AGYSEGTDF----------- 430 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-------------------------------~g~~~~~~~----------- 430 (549)
.++|...+.||+|+||.||+|... ++.. .+++...++
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~ 89 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSR 89 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCSGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------C
T ss_pred ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccccHHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccc
Confidence 356888899999999999999986 3322 344332111
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
......++||||+++|+|.+++.... ...+++..+..++.|+++||.|||
T Consensus 90 ~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH 139 (284)
T 2a19_B 90 SKTKCLFIQMEFCDKGTLEQWIEKRR----GEKLDKVLALELFEQITKGVDYIH 139 (284)
T ss_dssp CEEEEEEEEECCCCSCBHHHHHHHGG----GSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcceEEEEEeccCCCCHHHHHhhcc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11345799999999999999997543 246899999999999999999999
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-12 Score=125.00 Aligned_cols=81 Identities=27% Similarity=0.379 Sum_probs=65.6
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce------------------------------------------eEEEecc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------------AGYSEGT 428 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------------~g~~~~~ 428 (549)
...++|...+.||+|+||.||+|+... +.. ++++..
T Consensus 16 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~- 94 (287)
T 4f0f_A 16 LADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHN- 94 (287)
T ss_dssp CCSTTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETT-
T ss_pred hhhccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecC-
Confidence 566789999999999999999999753 222 233322
Q ss_pred ccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 429 DFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 429 ~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... ..+++..+..++.|+++|++|||
T Consensus 95 ------~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~lH 139 (287)
T 4f0f_A 95 ------PPRMVMEFVPCGDLYHRLLDKA-----HPIKWSVKLRLMLDIALGIEYMQ 139 (287)
T ss_dssp ------TTEEEEECCTTCBHHHHHHCTT-----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCeEEEEecCCCCHHHHHhccc-----CCccHHHHHHHHHHHHHHHHHHH
Confidence 2379999999999999987543 46899999999999999999999
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7.1e-13 Score=131.39 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=69.4
Q ss_pred cccccCcCCCccccCceecEEEEEeC-CCce-------------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG-EKWT-------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-------------------------------------~g~~~~~~~~~~ 433 (549)
...++|...+.||+|+||.||+|+.. ++.. ++++.. .
T Consensus 12 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~-----~ 86 (328)
T 3fe3_A 12 PHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIET-----E 86 (328)
T ss_dssp CEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----S
T ss_pred CccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----C
Confidence 34568999999999999999999973 3332 466665 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 87 ~~~~lv~e~~~~~~L~~~l~~~~------~l~~~~~~~~~~qi~~al~~lH 131 (328)
T 3fe3_A 87 KTLYLIMEYASGGEVFDYLVAHG------RMKEKEARSKFRQIVSAVQYCH 131 (328)
T ss_dssp SEEEEEECCCTTCBHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999997654 5889999999999999999999
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-12 Score=125.33 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=69.5
Q ss_pred cccccCcCCCccccCceecEEEEEeC-CCce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG-EKWT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--------------------------------------~g~~~~~~~~~ 432 (549)
...++|...+.||+|+||.||+|+.. ++.. ++++..
T Consensus 8 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----- 82 (278)
T 3cok_A 8 EKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFED----- 82 (278)
T ss_dssp SSGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEEC-----
T ss_pred cccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEcc-----
Confidence 34567888999999999999999974 3332 456665
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 83 ~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH 129 (278)
T 3cok_A 83 SNYVYLVLEMCHNGEMNRYLKNRV-----KPFSENEARHFMHQIITGMLYLH 129 (278)
T ss_dssp SSEEEEEEECCTTEEHHHHHHTCS-----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCCCCcHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998643 46899999999999999999999
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-12 Score=129.59 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=40.2
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.++++... .....++..+..++.|+++||+|||
T Consensus 135 ~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~i~~qi~~aL~~LH 181 (332)
T 3qd2_B 135 YLYIQMQLCRKENLKDWMNRRC---SLEDREHGVCLHIFIQIAEAVEFLH 181 (332)
T ss_dssp EEEEEEECCCSSCHHHHHHTCC---SGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEecCCCCHHHHHhccc---CccchhhHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999998654 2345567778999999999999999
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-14 Score=141.98 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=41.7
Q ss_pred cccEEEcccccccccc----ChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccc
Q 039925 224 TATIIAMGGNQISGTI----TLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSL 297 (549)
Q Consensus 224 ~L~~L~l~~n~l~~~~----~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l 297 (549)
+|++|+|++|.+++.. +..+... ++|+.|+|++|.+++.....++..+...++|++|+|++|.|++.....+
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~--~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRN--RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGC--SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcC--CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 5666666666665422 3344555 6777777777777643222223445556777777777777765433333
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-12 Score=130.56 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=69.6
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc--e--------------------------------eEEEeccccCCCceEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW--T--------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~--~--------------------------------~g~~~~~~~~~~~~~~ 437 (549)
...+.|...+.||+|+||.||+|+..+.. + ++++.. ....+
T Consensus 50 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~~~ 124 (349)
T 2w4o_A 50 ALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFET-----PTEIS 124 (349)
T ss_dssp CGGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------CHHHHHCCCTTBCCEEEEEEC-----SSEEE
T ss_pred cccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhCCCCCCcceeeeEec-----CCeEE
Confidence 45667888999999999999999986432 1 456665 67889
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 125 lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~L~~LH 165 (349)
T 2w4o_A 125 LVLELVTGGELFDRIVEKG------YYSERDAADAVKQILEAVAYLH 165 (349)
T ss_dssp EEECCCCSCBHHHHHTTCS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998643 5899999999999999999999
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-12 Score=139.48 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=70.0
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------------~g~~~~~~ 429 (549)
..-++|...++||+|+||.||+|+... +.. ++++.+
T Consensus 186 ~slddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~-- 263 (689)
T 3v5w_A 186 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT-- 263 (689)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC--
T ss_pred CchHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEE--
Confidence 346789999999999999999999754 332 345555
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++|||||+||+|.++|+..+ .+++.....|+.||+.||+|||
T Consensus 264 ---~~~lylVmEy~~GGdL~~~l~~~~------~l~E~~a~~y~~qIl~aL~yLH 309 (689)
T 3v5w_A 264 ---PDKLSFILDLMNGGDLHYHLSQHG------VFSEADMRFYAAEIILGLEHMH 309 (689)
T ss_dssp ---SSEEEEEECCCCSCBHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEEEecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999998654 6899999999999999999999
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-12 Score=125.84 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=68.2
Q ss_pred ccccCcCCCccccCceecEEEEEeC-CCce--------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILG-EKWT--------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--------------------------------------~g~~~~~~~~~~ 433 (549)
..++|...+.||+|+||.||+|+.. ++.. ++++.. .
T Consensus 9 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~ 83 (276)
T 2h6d_A 9 KIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIST-----P 83 (276)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----S
T ss_pred eeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEec-----C
Confidence 3467888899999999999999975 3322 455655 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 84 ~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH 128 (276)
T 2h6d_A 84 TDFFMVMEYVSGGELFDYICKHG------RVEEMEARRLFQQILSAVDYCH 128 (276)
T ss_dssp SEEEEEEECCCSCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeccCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999997643 5889999999999999999999
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.28 E-value=9e-13 Score=129.56 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=67.9
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~ 432 (549)
...++|...+.||+|+||.||+|.... +.. ++++..
T Consensus 31 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~----- 105 (309)
T 2h34_A 31 TQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEI----- 105 (309)
T ss_dssp ---CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----
T ss_pred cEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEee-----
Confidence 345688899999999999999999753 221 466665
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++... .+++..+..++.|+++||+|||
T Consensus 106 ~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~lH 151 (309)
T 2h34_A 106 DGQLYVDMRLINGVDLAAMLRRQG------PLAPPRAVAIVRQIGSALDAAH 151 (309)
T ss_dssp TTEEEEEEECCCCEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEecCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998643 5899999999999999999999
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-12 Score=126.11 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=68.8
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce------------------------------------eEEEeccccCCCceE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------------------~g~~~~~~~~~~~~~ 436 (549)
..+.|...+.||+|+||.||+|...+... ++++.. ....
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~ 81 (277)
T 3f3z_A 7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFED-----NTDI 81 (277)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SSEE
T ss_pred hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEec-----CCeE
Confidence 34568888999999999999999865432 566665 6788
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 82 ~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~i~~~i~~~l~~lH 123 (277)
T 3f3z_A 82 YLVMELCTGGELFERVVHKR------VFRESDAARIMKDVLSAVAYCH 123 (277)
T ss_dssp EEEEECCCSCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987643 5899999999999999999999
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-12 Score=127.90 Aligned_cols=77 Identities=22% Similarity=0.130 Sum_probs=64.8
Q ss_pred cCcCCCccccCceecEEEEEeC-CCce-----------------------------------eEEEeccccCCCceEEEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILG-EKWT-----------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~-~~~~-----------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
.|...+.||+|+||.||+|+.. ++.. ++++.. .+..++|
T Consensus 46 ~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~~~lv 120 (321)
T 2c30_A 46 LLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLV-----GEELWVL 120 (321)
T ss_dssp HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTEEEEE
T ss_pred hhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEE-----CCEEEEE
Confidence 3566678999999999999975 3332 466666 6789999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.+++... .++|..+..++.|+++||+|||
T Consensus 121 ~e~~~~~~L~~~l~~~-------~l~~~~~~~i~~qi~~~L~~LH 158 (321)
T 2c30_A 121 MEFLQGGALTDIVSQV-------RLNEEQIATVCEAVLQALAYLH 158 (321)
T ss_dssp ECCCCSCBHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998743 4899999999999999999999
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-12 Score=129.02 Aligned_cols=86 Identities=20% Similarity=0.225 Sum_probs=68.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCce
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~ 435 (549)
..+.|...+.||+|+||.||+|+... +.. ++++... ....
T Consensus 7 ~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~---~~~~ 83 (396)
T 4eut_A 7 SNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEET---TTRH 83 (396)
T ss_dssp SSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECT---TTCC
T ss_pred CCCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccC---CCCe
Confidence 34578888999999999999999864 222 3455441 1346
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.++++... ....+++..+..++.|++.||+|||
T Consensus 84 ~~lv~e~~~~g~L~~~l~~~~---~~~~l~~~~~~~i~~qi~~aL~~LH 129 (396)
T 4eut_A 84 KVLIMEFCPCGSLYTVLEEPS---NAYGLPESEFLIVLRDVVGGMNHLR 129 (396)
T ss_dssp EEEEECCCTTEEHHHHTTSGG---GTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHhhh---cccCCCHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999998654 2234899999999999999999999
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.27 E-value=8e-13 Score=128.34 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=68.9
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce-------------------------------------eEEEeccccCCCce
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT-------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-------------------------------------~g~~~~~~~~~~~~ 435 (549)
..+.|...+.||+|+||.||+|....... ++++.. ...
T Consensus 20 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~ 94 (285)
T 3is5_A 20 IDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFED-----YHN 94 (285)
T ss_dssp HHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SSE
T ss_pred hhhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheec-----CCe
Confidence 45678888999999999999998753321 566665 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... .....+++..+..++.|+++||+|||
T Consensus 95 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~qi~~~L~~LH 141 (285)
T 3is5_A 95 MYIVMETCEGGELLERIVSAQ--ARGKALSEGYVAELMKQMMNALAYFH 141 (285)
T ss_dssp EEEEECCCSCCBHHHHHHHHH--HHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCcHHHHHHhhh--hcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999986432 01246899999999999999999999
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-12 Score=128.24 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=67.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------------eEEEecccc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------------AGYSEGTDF 430 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------------~g~~~~~~~ 430 (549)
..+.|...+.||+|+||.||+|.... +.. ++++..
T Consensus 9 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--- 85 (326)
T 2y0a_A 9 VDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYEN--- 85 (326)
T ss_dssp HHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---
T ss_pred cccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEe---
Confidence 34568888999999999999998753 221 455555
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 86 --~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~al~~lH 131 (326)
T 2y0a_A 86 --KTDVILILELVAGGELFDFLAEKE------SLTEEEATEFLKQILNGVYYLH 131 (326)
T ss_dssp --SSEEEEEEECCCSCBHHHHHTTSS------CCBHHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEEEcCCCCCHHHHHHhcC------CcCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999997543 6899999999999999999999
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-12 Score=133.09 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=68.7
Q ss_pred ccccCcCCCccccCceecEEEEEeC-CCce--------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILG-EKWT--------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--------------------------------------~g~~~~~~~~~~ 433 (549)
..++|...+.||+|+||.||+|+.. ++.. ++++.. .
T Consensus 14 ~~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~-----~ 88 (476)
T 2y94_A 14 KIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVIST-----P 88 (476)
T ss_dssp EETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----S
T ss_pred eecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----C
Confidence 4567888899999999999999975 3322 466665 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 89 ~~~~lv~E~~~gg~L~~~l~~~~------~l~~~~~~~i~~qi~~aL~~LH 133 (476)
T 2y94_A 89 SDIFMVMEYVSGGELFDYICKNG------RLDEKESRRLFQQILSGVDYCH 133 (476)
T ss_dssp SEEEEEEECCSSEEHHHHTTSSS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999998543 6899999999999999999999
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-12 Score=129.90 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=69.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce----------------------------------eEEEeccccCCCceE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~----------------------------------~g~~~~~~~~~~~~~ 436 (549)
...+.|...+.||+|+||.||+++... +.. ++++.. ....
T Consensus 17 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~~~ 91 (361)
T 3uc3_A 17 HDSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILT-----PTHL 91 (361)
T ss_dssp CCTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SSEE
T ss_pred CCCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEee-----CCEE
Confidence 345678889999999999999999753 322 466666 6789
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 92 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~ql~~~L~~LH 133 (361)
T 3uc3_A 92 AIIMEYASGGELYERICNAG------RFSEDEARFFFQQLLSGVSYCH 133 (361)
T ss_dssp EEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997543 5899999999999999999999
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-12 Score=127.13 Aligned_cols=82 Identities=20% Similarity=0.187 Sum_probs=62.1
Q ss_pred cccccCcCCCccccCceecEEEEEeC--CCc---e-------------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG--EKW---T-------------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~--~~~---~-------------------------------------~g~~~~~~ 429 (549)
...++|...+.||+|+||.||+|++. ++. + ++++..
T Consensus 15 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-- 92 (291)
T 1u46_A 15 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-- 92 (291)
T ss_dssp CCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS--
T ss_pred cchhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcc--
Confidence 34567888999999999999999863 222 1 344443
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 93 ----~~~~~v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~i~~~l~~lH 138 (291)
T 1u46_A 93 ----PPMKMVTELAPLGSLLDRLRKHQ-----GHFLLGTLSRYAVQVAEGMGYLE 138 (291)
T ss_dssp ----SSCEEEEECCTTCBHHHHHHHHG-----GGSCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCceeeEecccCCCHHHHHHhcc-----CCcCHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999998643 45889999999999999999999
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-12 Score=128.51 Aligned_cols=80 Identities=18% Similarity=0.180 Sum_probs=66.9
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~ 433 (549)
.-++|...+.||+|+||.||+|.... +.. ++++.. .
T Consensus 7 ~i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~-----~ 81 (336)
T 3h4j_B 7 HIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITT-----P 81 (336)
T ss_dssp EETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEEC-----S
T ss_pred ccCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-----C
Confidence 34678889999999999999999743 221 466666 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+ +|+|.+++.... .+++.....++.|+++||+|||
T Consensus 82 ~~~~lv~E~~-~g~l~~~l~~~~------~l~~~~~~~i~~qi~~aL~~LH 125 (336)
T 3h4j_B 82 TDIVMVIEYA-GGELFDYIVEKK------RMTEDEGRRFFQQIICAIEYCH 125 (336)
T ss_dssp SEEEEEECCC-CEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECC-CCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 7889999999 789999987643 5899999999999999999999
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-12 Score=130.48 Aligned_cols=84 Identities=21% Similarity=0.378 Sum_probs=60.2
Q ss_pred ccccCcCCCccccCceecEEEEEeCC----Cce----------------------------------------------e
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE----KWT----------------------------------------------A 422 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~----~~~----------------------------------------------~ 422 (549)
..++|...+.||+|+||.||+|+... +.. +
T Consensus 35 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~ 114 (345)
T 2v62_A 35 EGNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFY 114 (345)
T ss_dssp TSCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEE
T ss_pred cCceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceee
Confidence 34678899999999999999999864 111 2
Q ss_pred EEEeccccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 423 GYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 423 g~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+++.. ...+....++||||+ +|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 115 ~~~~~-~~~~~~~~~lv~e~~-~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH 168 (345)
T 2v62_A 115 GSGLT-EFKGRSYRFMVMERL-GIDLQKISGQNG------TFKKSTVLQLGIRMLDVLEYIH 168 (345)
T ss_dssp EEEEE-ESSSCEEEEEEEECE-EEEHHHHCBGGG------BCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-ccCCCcEEEEEEecc-CCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 22222 112246789999999 999999998643 6899999999999999999999
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.7e-12 Score=123.87 Aligned_cols=86 Identities=20% Similarity=0.225 Sum_probs=68.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCce
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~ 435 (549)
..+.|...+.||+|+||.||+|+... +.. ++++... ....
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~~ 83 (319)
T 4euu_A 7 SNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEET---TTRH 83 (319)
T ss_dssp SSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECT---TTCC
T ss_pred CCCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecC---CCce
Confidence 34568888999999999999999864 221 3444431 1347
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... ....+++..+..++.|+++||+|||
T Consensus 84 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~i~~qi~~~L~~LH 129 (319)
T 4euu_A 84 KVLIMEFCPCGSLYTVLEEPS---NAYGLPESEFLIVLRDVVGGMNHLR 129 (319)
T ss_dssp EEEEEECCTTCBHHHHHHSGG---GTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHhc---cccCCCHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999998654 2234899999999999999999999
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-12 Score=125.03 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=66.5
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce------------------------------------eEEEeccccCCCceEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
.++|....+||+|+||.||+|....... ++++.. .+..+
T Consensus 21 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~~ 95 (295)
T 2clq_A 21 YDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSE-----NGFIK 95 (295)
T ss_dssp BCTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEEE
T ss_pred ccCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEe-----CCcEE
Confidence 3455566689999999999999743321 566665 67889
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++.... ....+++..+..++.|+++||+|||
T Consensus 96 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~~qi~~~l~~lH 139 (295)
T 2clq_A 96 IFMEQVPGGSLSALLRSKW---GPLKDNEQTIGFYTKQILEGLKYLH 139 (295)
T ss_dssp EEEECCSEEEHHHHHHHTT---CCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhhc---cCCCccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998653 2345678888899999999999999
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-12 Score=127.79 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=68.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------------~g~~~~~~ 429 (549)
...+.|...+.||+|+||.||+|+... +.. ++++..
T Consensus 9 ~~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-- 86 (361)
T 2yab_A 9 KVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYEN-- 86 (361)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEEC--
T ss_pred ChhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEe--
Confidence 456678889999999999999998753 221 455555
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 87 ---~~~~~lv~e~~~gg~L~~~l~~~~------~l~~~~~~~i~~qi~~aL~~LH 132 (361)
T 2yab_A 87 ---RTDVVLILELVSGGELFDFLAQKE------SLSEEEATSFIKQILDGVNYLH 132 (361)
T ss_dssp ---SSEEEEEEECCCSCBHHHHHTTCS------CCBHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEEEEcCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999997543 6899999999999999999999
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-12 Score=130.68 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=69.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCce
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~ 435 (549)
...+.|...+.||+|+||.||+|.... +.. ++++.. ...
T Consensus 48 ~~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~ 122 (387)
T 1kob_A 48 SVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFED-----KYE 122 (387)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEEC-----SSE
T ss_pred ccccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEe-----CCE
Confidence 345678889999999999999998753 322 456665 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... ..+++.....++.|+++||+|||
T Consensus 123 ~~lv~E~~~gg~L~~~l~~~~-----~~l~~~~~~~i~~qi~~aL~~LH 166 (387)
T 1kob_A 123 MVLILEFLSGGELFDRIAAED-----YKMSEAEVINYMRQACEGLKHMH 166 (387)
T ss_dssp EEEEEECCCCCBHHHHTTCTT-----CCBCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997543 46899999999999999999999
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.4e-12 Score=123.95 Aligned_cols=87 Identities=14% Similarity=0.234 Sum_probs=66.0
Q ss_pred ccccCcCC-CccccCceecEEEEEeCC-Cce-------------------------------eEEEeccccCCCceEEEE
Q 039925 393 VTNEFSSS-NMIGQGSFGSVYKGILGE-KWT-------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 393 ~~~~~~~~-~~lG~G~~g~Vy~~~~~~-~~~-------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
..++|... ++||+|+||.||+|.... +.. ++++... .......++|
T Consensus 15 ~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~~~lv 93 (299)
T 3m2w_A 15 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKCLLIV 93 (299)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEEEEEE
T ss_pred cccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecccHHHHHHHHHHHHhccCCCchhHHhhhhhh-cCCCceEEEE
Confidence 34456554 779999999999999743 322 3333220 1124568999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.+++.... ...+++..+..++.|++.||+|||
T Consensus 94 ~e~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH 134 (299)
T 3m2w_A 94 MECLDGGELFSRIQDRG----DQAFTEREASEIMKSIGEAIQYLH 134 (299)
T ss_dssp ECCCCSCBHHHHHHHCT----TCCCBHHHHHHHHHHHHHHHHHHH
T ss_pred EeecCCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998653 346899999999999999999999
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-12 Score=127.72 Aligned_cols=81 Identities=22% Similarity=0.313 Sum_probs=67.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~ 434 (549)
...+.|...+.||+|+||.||+|+... +.. ++++.. ..
T Consensus 19 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 93 (303)
T 3a7i_A 19 DPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-----DT 93 (303)
T ss_dssp CGGGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TT
T ss_pred ChHHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----CC
Confidence 345568888999999999999998643 322 466665 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++... .+++..+..++.|+++||.|||
T Consensus 94 ~~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH 136 (303)
T 3a7i_A 94 KLWIIMEYLGGGSALDLLEPG-------PLDETQIATILREILKGLDYLH 136 (303)
T ss_dssp EEEEEEECCTTEEHHHHHTTS-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCcHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998743 4899999999999999999999
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=99.26 E-value=5.4e-12 Score=129.50 Aligned_cols=81 Identities=17% Similarity=0.227 Sum_probs=66.5
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-e-------------------------------------------eEEEec
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-T-------------------------------------------AGYSEG 427 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~-------------------------------------------~g~~~~ 427 (549)
...++|...+.||+|+||.||+|...... . ++++.
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~- 210 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD- 210 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence 34678888999999999999999875431 1 34443
Q ss_pred cccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 428 TDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 428 ~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 211 -----~~~~~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH 256 (419)
T 3i6u_A 211 -----AEDYYIVLELMEGGELFDKVVGNK------RLKEATCKLYFYQMLLAVQYLH 256 (419)
T ss_dssp -----SSEEEEEEECCTTCBGGGGTSSSC------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred -----cCceEEEEEcCCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999987543 6899999999999999999999
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-12 Score=126.91 Aligned_cols=86 Identities=14% Similarity=0.079 Sum_probs=67.8
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCce
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~ 435 (549)
.++|...+.||+|+||.||+|.... +.. ++++... ....
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~---~~~~ 81 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDR---TNTT 81 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEG---GGTE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecC---CCce
Confidence 4678888999999999999999753 322 4544321 1467
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... .....+++..+..++.|+++||+|||
T Consensus 82 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lH 128 (279)
T 2w5a_A 82 LYIVMEYCEGGDLASVITKGT--KERQYLDEEFVLRVMTQLTLALKECH 128 (279)
T ss_dssp EEEEEECCTTEEHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHhhc--ccCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999997543 11345899999999999999999999
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=99.25 E-value=4.7e-12 Score=122.08 Aligned_cols=79 Identities=13% Similarity=0.199 Sum_probs=66.8
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
++|...+.||+|+||.||+|+... +.. ++++.. ....+
T Consensus 7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 81 (276)
T 2yex_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-----GNIQY 81 (276)
T ss_dssp HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEEE
T ss_pred cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEc-----CCEEE
Confidence 567888899999999999998753 322 466655 67889
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++... ..+++.....++.|+++||+|||
T Consensus 82 lv~e~~~~~~L~~~l~~~------~~~~~~~~~~~~~~i~~~l~~lH 122 (276)
T 2yex_A 82 LFLEYCSGGELFDRIEPD------IGMPEPDAQRFFHQLMAGVVYLH 122 (276)
T ss_dssp EEEECCTTEEGGGGSBTT------TBCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCcHHHHHhhc------cCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999754 35889999999999999999999
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-12 Score=126.96 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=63.8
Q ss_pred CCccccCceecEEEEEeCC-Cce---------------------------------eEEEeccccCCCceEEEEEeecCC
Q 039925 400 SNMIGQGSFGSVYKGILGE-KWT---------------------------------AGYSEGTDFKGIDFKAVVFDYMQN 445 (549)
Q Consensus 400 ~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------~g~~~~~~~~~~~~~~lv~ey~~~ 445 (549)
++.||+|+||.||+|+... +.. ++++.. ....++||||+++
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~-----~~~~~lv~e~~~~ 90 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHD-----QLHTFLVMELLNG 90 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGGGHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----SSEEEEEECCCCS
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChhhhhhHHHHHHHHHHhcCCCCeeEEEEEEEc-----CCEEEEEEEccCC
Confidence 5789999999999999864 322 566666 7788999999999
Q ss_pred CCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 446 RSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 446 GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 91 ~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH 123 (325)
T 3kn6_A 91 GELFERIKKKK------HFSETEASYIMRKLVSAVSHMH 123 (325)
T ss_dssp CBHHHHHHHCS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998643 6899999999999999999999
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-12 Score=127.44 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=68.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc-e--------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW-T--------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~--------------------------------------~g~~~~~~~~~~ 433 (549)
..+.|...+.||+|+||.||+|...+.. . ++++.. .
T Consensus 13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~ 87 (294)
T 2rku_A 13 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED-----N 87 (294)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----S
T ss_pred cccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeecc-----C
Confidence 4557888899999999999999986432 1 566666 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 88 ~~~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~i~~qi~~~l~~lH 132 (294)
T 2rku_A 88 DFVFVVLELCRRRSLLELHKRRK------ALTEPEARYYLRQIVLGCQYLH 132 (294)
T ss_dssp SEEEEEEECCTTCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999987543 6899999999999999999999
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-12 Score=126.27 Aligned_cols=88 Identities=16% Similarity=0.252 Sum_probs=67.7
Q ss_pred cccccCcC-CCccccCceecEEEEEeCC-Cce-------------------------------eEEEeccccCCCceEEE
Q 039925 392 TVTNEFSS-SNMIGQGSFGSVYKGILGE-KWT-------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 392 ~~~~~~~~-~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------~g~~~~~~~~~~~~~~l 438 (549)
...++|.. .++||+|+||.||+|.... +.. ++++... ..+....++
T Consensus 25 ~~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~~~l 103 (336)
T 3fhr_A 25 AVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYENM-HHGKRCLLI 103 (336)
T ss_dssp CGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEEEEE
T ss_pred cccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHHHHHHHHHHHhcCCCChHHHHHHHhhc-cCCCceEEE
Confidence 56678887 4579999999999999863 322 3333321 111345799
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.+++.... ...+++..+..++.|+++||+|||
T Consensus 104 v~e~~~gg~L~~~l~~~~----~~~l~~~~~~~i~~ql~~~l~~LH 145 (336)
T 3fhr_A 104 IMECMEGGELFSRIQERG----DQAFTEREAAEIMRDIGTAIQFLH 145 (336)
T ss_dssp EEECCTTEEHHHHHHTC-----CCCCBHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998653 346999999999999999999999
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-12 Score=124.98 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=68.5
Q ss_pred ccccCcCCCccccCceecEEEEEeCCC-ce-------------------------------------eEEEeccccCCCc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEK-WT-------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~-------------------------------------~g~~~~~~~~~~~ 434 (549)
-.++|...+.||+|+||.||+|..... .. ++++.. ..
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 78 (284)
T 3kk8_A 4 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-----ES 78 (284)
T ss_dssp TTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SS
T ss_pred hhhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEc-----CC
Confidence 457888899999999999999987542 21 466665 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 79 ~~~~v~e~~~~~~l~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH 122 (284)
T 3kk8_A 79 FHYLVFDLVTGGELFEDIVARE------FYSEADASHCIQQILESIAYCH 122 (284)
T ss_dssp EEEEEECCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999987643 5899999999999999999999
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.5e-12 Score=127.16 Aligned_cols=86 Identities=19% Similarity=0.236 Sum_probs=66.5
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEecc-ccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGT-DFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~-~~~~ 432 (549)
...++|...+.||+|+||+||+|+... +.. ++++... .+..
T Consensus 51 ~i~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~ 130 (398)
T 4b99_A 51 DVGDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGE 130 (398)
T ss_dssp CCCSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTT
T ss_pred CCCCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeeccccccc
Confidence 445679999999999999999999753 332 3333221 1122
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++|||||+ |+|.+++...+ .+++.+...|+.|++.||+|||
T Consensus 131 ~~~~~ivmE~~~-g~L~~~i~~~~------~l~~~~~~~~~~qil~al~ylH 175 (398)
T 4b99_A 131 FKSVYVVLDLME-SDLHQIIHSSQ------PLTLEHVRYFLYQLLRGLKYMH 175 (398)
T ss_dssp CCCEEEEEECCS-EEHHHHHTSSS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCC-CCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 467899999996 78999998643 6999999999999999999999
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.5e-12 Score=126.44 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=62.3
Q ss_pred CccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCceEEEEEe
Q 039925 401 NMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDFKAVVFD 441 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~~~lv~e 441 (549)
+.||+|+||.||+|+... +.. ++++.. .+..++|||
T Consensus 35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~-----~~~~~lv~e 109 (327)
T 3lm5_A 35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYEN-----TSEIILILE 109 (327)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----SSEEEEEEE
T ss_pred ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEe-----CCeEEEEEE
Confidence 789999999999998763 222 455555 678899999
Q ss_pred ecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 442 YMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 442 y~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|+++|+|.+++.... ...+++..+..++.|+++||+|||
T Consensus 110 ~~~~~~L~~~~~~~~----~~~~~~~~~~~i~~ql~~~L~~LH 148 (327)
T 3lm5_A 110 YAAGGEIFSLCLPEL----AEMVSENDVIRLIKQILEGVYYLH 148 (327)
T ss_dssp CCTTEEGGGGGSSCC-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCcHHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999997543 356899999999999999999999
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-12 Score=127.62 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=69.3
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce---------------------------------eEEEeccccCCCceEEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------~g~~~~~~~~~~~~~~l 438 (549)
...++|...+.||+|+||.||+|+...... ++++.. ....++
T Consensus 19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~-----~~~~~l 93 (342)
T 2qr7_A 19 QFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDD-----GKYVYV 93 (342)
T ss_dssp CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCCCHHHHHHHHHHTTSTTBCCEEEEEEC-----SSEEEE
T ss_pred CccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCChHHHHHHHHHhcCCCCcCeEEEEEEc-----CCEEEE
Confidence 345678888999999999999999754321 466665 778999
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 94 v~E~~~gg~L~~~i~~~~------~~~~~~~~~~~~qi~~al~~lH 133 (342)
T 2qr7_A 94 VTELMKGGELLDKILRQK------FFSEREASAVLFTITKTVEYLH 133 (342)
T ss_dssp EECCCCSCBHHHHHHTCT------TCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997543 5899999999999999999999
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.4e-12 Score=124.47 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=67.2
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce--------------------------------------------eEEEec
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------------------AGYSEG 427 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------------~g~~~~ 427 (549)
...++|...+.||+|+||.||+|+...... ++++..
T Consensus 21 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~ 100 (335)
T 3dls_A 21 EYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN 100 (335)
T ss_dssp HHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred ccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee
Confidence 345678888999999999999998643221 455555
Q ss_pred cccCCCceEEEEEeecCCC-CcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 428 TDFKGIDFKAVVFDYMQNR-SLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 428 ~~~~~~~~~~lv~ey~~~G-sL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+..| +|.+++.... .+++..+..++.|+++||+|||
T Consensus 101 -----~~~~~lv~e~~~~g~~l~~~~~~~~------~l~~~~~~~i~~qi~~~L~~LH 147 (335)
T 3dls_A 101 -----QGFFQLVMEKHGSGLDLFAFIDRHP------RLDEPLASYIFRQLVSAVGYLR 147 (335)
T ss_dssp -----SSEEEEEEECCTTSCBHHHHHHTCC------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCEEEEEEEeCCCCccHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 67889999999877 9999998643 5899999999999999999999
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-11 Score=123.44 Aligned_cols=104 Identities=16% Similarity=0.087 Sum_probs=77.8
Q ss_pred EEEccCC-cceecCCccccCCCCCCEeeccc-ccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEee
Q 039925 61 FINLVDN-NFRGEIPEKVGRLFRLEYLLLAN-NHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFK 138 (549)
Q Consensus 61 ~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 138 (549)
.++.+++ +++ .+|. |..+++|++|+|++ |.|++..|..|..+++| ++|+|++|+|++..|..|.++++|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGEL-RNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCC-SEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCC-CEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4577777 777 6777 88888888888885 88886555678888888 888888888887777778888888888888
Q ss_pred cceeeeeCCccccCCCCCCEEecccCccee
Q 039925 139 ENSLEGKFPNTLSNLRSLFYDNINRNEFSG 168 (549)
Q Consensus 139 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 168 (549)
+|+|++..+..|..++ |++|+|.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888744444444444 8888888877763
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-12 Score=129.43 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=59.7
Q ss_pred CcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCceEEEEE
Q 039925 397 FSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+...+.||+|+||.||+|.... +.. ++++.. .+..++||
T Consensus 91 ~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-----~~~~~lv~ 165 (373)
T 2x4f_A 91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFES-----KNDIVLVM 165 (373)
T ss_dssp EEEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SSEEEEEE
T ss_pred eecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEE-----CCEEEEEE
Confidence 3446679999999999998753 322 566666 67899999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||+++|+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 166 E~~~~~~L~~~l~~~~-----~~l~~~~~~~i~~qi~~aL~~LH 204 (373)
T 2x4f_A 166 EYVDGGELFDRIIDES-----YNLTELDTILFMKQICEGIRHMH 204 (373)
T ss_dssp ECCTTCEEHHHHHHTG-----GGCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987543 46899999999999999999999
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.6e-12 Score=127.16 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=70.8
Q ss_pred cccccCcCCCccccC--ceecEEEEEeCC-Cce-------------------------------------eEEEeccccC
Q 039925 392 TVTNEFSSSNMIGQG--SFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G--~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~ 431 (549)
...++|...+.||+| +||.||+|+... +.. ++++..
T Consensus 22 ~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~---- 97 (389)
T 3gni_B 22 PEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIA---- 97 (389)
T ss_dssp CCGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE----
T ss_pred CCCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEE----
Confidence 356678999999999 999999999863 322 466666
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++|||||++|+|.+++.... ...+++..+..++.|+++||+|||
T Consensus 98 -~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~LH 145 (389)
T 3gni_B 98 -DNELWVVTSFMAYGSAKDLICTHF----MDGMNELAIAYILQGVLKALDYIH 145 (389)
T ss_dssp -TTEEEEEEECCTTCBHHHHHHHTC----TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEEccCCCCHHHHHhhhc----ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999998653 245899999999999999999999
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-12 Score=127.27 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=65.3
Q ss_pred cccCcCCCccccCceecEEEEEeCC---------Cce-------------------------------------------
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE---------KWT------------------------------------------- 421 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~---------~~~------------------------------------------- 421 (549)
.++|...+.||+|+||.||+|+... +..
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~ 120 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIP 120 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETTSTHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCC
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEecccchHHHHHHHHHHhcccchhhhhhhhccCCccCcc
Confidence 4689999999999999999999764 221
Q ss_pred --eEEEeccccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 422 --AGYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 422 --~g~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++++.. .....++||||+ +|+|.+++.... ...+++..+..++.|+++||+|||
T Consensus 121 ~~~~~~~~----~~~~~~lv~e~~-~~~L~~~l~~~~----~~~l~~~~~~~i~~qi~~~L~~LH 176 (352)
T 2jii_A 121 TCMGFGVH----QDKYRFLVLPSL-GRSLQSALDVSP----KHVLSERSVLQVACRLLDALEFLH 176 (352)
T ss_dssp CCCEEEEE----TTTEEEEEEECC-CEEHHHHHHHSG----GGCCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccc----CCcEEEEEecCC-CcCHHHHHHhCC----cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 112221 146789999999 999999998642 246999999999999999999999
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-12 Score=124.20 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=68.8
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~~ 433 (549)
..++|...+.||+|+||.||+|+...... ++++.. .
T Consensus 12 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~ 86 (284)
T 2vgo_A 12 TIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHD-----R 86 (284)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----S
T ss_pred hhhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEc-----C
Confidence 34678889999999999999999864331 456655 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 87 ~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH 131 (284)
T 2vgo_A 87 KRIYLMLEFAPRGELYKELQKHG------RFDEQRSATFMEELADALHYCH 131 (284)
T ss_dssp SEEEEEECCCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999998643 5889999999999999999999
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=4.2e-12 Score=126.25 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=67.9
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCc
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~ 434 (549)
.++|...+.||+|+||.||+|+... +.. .+++.. .+
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~-----~~ 78 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT-----HD 78 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEEC-----SS
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEe-----CC
Confidence 4678889999999999999999753 322 455655 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 79 ~~~lv~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH 122 (337)
T 1o6l_A 79 RLCFVMEYANGGELFFHLSRER------VFTEERARFYGAEIVSALEYLH 122 (337)
T ss_dssp EEEEEEECCTTCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998643 5889999999999999999999
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-12 Score=124.59 Aligned_cols=83 Identities=14% Similarity=0.189 Sum_probs=68.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCce
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~ 435 (549)
...+.|...+.||+|+||.||+|.... +.. ++++.. .+.
T Consensus 16 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 90 (302)
T 2j7t_A 16 DPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYH-----DGK 90 (302)
T ss_dssp CGGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----C-C
T ss_pred CCccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeee-----CCe
Confidence 455678888899999999999999864 322 466665 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... ..+++..+..++.|+++||.|||
T Consensus 91 ~~lv~e~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH 134 (302)
T 2j7t_A 91 LWIMIEFCPGGAVDAIMLELD-----RGLTEPQIQVVCRQMLEALNFLH 134 (302)
T ss_dssp EEEEEECCTTEEHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCcHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999987543 45899999999999999999999
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-12 Score=131.06 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=66.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~ 434 (549)
-.++|...+.||+|+||.||+|.... +.. ++++.. .+
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-----~~ 83 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISE-----EG 83 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEEC-----SS
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEE-----CC
Confidence 45678888999999999999998643 221 466665 77
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... .+++.....++.|+++|++|||
T Consensus 84 ~~~lv~E~~~gg~L~~~i~~~~------~~~e~~~~~i~~qil~aL~~lH 127 (444)
T 3soa_A 84 HHYLIFDLVTGGELFEDIVARE------YYSEADASHCIQQILEAVLHCH 127 (444)
T ss_dssp EEEEEECCCBCCBHHHHHHHCS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998654 5899999999999999999999
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-12 Score=129.18 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=69.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-e--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-T--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~--------------------------------------~g~~~~~~~~~ 432 (549)
...+.|...+.||+|+||.||++...+.. . ++++..
T Consensus 38 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----- 112 (335)
T 2owb_A 38 RSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED----- 112 (335)
T ss_dssp TTTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----
T ss_pred ccCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-----
Confidence 45567888999999999999999975432 1 566666
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 113 ~~~~~lv~e~~~~~~L~~~~~~~~------~l~~~~~~~i~~qi~~aL~~LH 158 (335)
T 2owb_A 113 NDFVFVVLELCRRRSLLELHKRRK------ALTEPEARYYLRQIVLGCQYLH 158 (335)
T ss_dssp SSEEEEEECCCTTCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCCCCCHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999987543 6899999999999999999999
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=99.22 E-value=5.9e-12 Score=126.07 Aligned_cols=85 Identities=16% Similarity=0.129 Sum_probs=68.0
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce----------------------------------------eEEEeccccC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT----------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~----------------------------------------~g~~~~~~~~ 431 (549)
..+.|...+.||+|+||.||+|+... +.. ++++..
T Consensus 22 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~---- 97 (351)
T 3c0i_A 22 FEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSS---- 97 (351)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEE----
T ss_pred cccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEe----
Confidence 34568888999999999999998753 221 455655
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... .....+++.....++.|+++||+|||
T Consensus 98 -~~~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~~i~~qi~~al~~lH 147 (351)
T 3c0i_A 98 -DGMLYMVFEFMDGADLCFEIVKRA--DAGFVYSEAVASHYMRQILEALRYCH 147 (351)
T ss_dssp -TTEEEEEEECCSSCBHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEeCCCCCCHHHHHHHhc--ccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999998886432 01235889999999999999999999
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-12 Score=128.36 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=68.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCCC-ce-------------------------------------eEEEeccccCCCc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEK-WT-------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~-------------------------------------~g~~~~~~~~~~~ 434 (549)
..++|...+.||+|+||.||+|..... .. ++++.. .+
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~ 101 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-----ES 101 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SS
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-----CC
Confidence 456788899999999999999987532 21 466666 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 102 ~~~lv~e~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~al~~lH 145 (362)
T 2bdw_A 102 FHYLVFDLVTGGELFEDIVARE------FYSEADASHCIQQILESIAYCH 145 (362)
T ss_dssp EEEEEECCCCSCBHHHHHTTCS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999997543 6899999999999999999999
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=99.22 E-value=5.6e-12 Score=124.55 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=67.8
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------------eEEEecccc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------------AGYSEGTDF 430 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------------~g~~~~~~~ 430 (549)
..+.|...+.||+|+||.||+|+... +.. ++++..
T Consensus 10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~--- 86 (321)
T 2a2a_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYEN--- 86 (321)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---
T ss_pred hhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEec---
Confidence 45678888999999999999998753 221 455555
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 87 --~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~lH 132 (321)
T 2a2a_A 87 --RTDVVLILELVSGGELFDFLAQKE------SLSEEEATSFIKQILDGVNYLH 132 (321)
T ss_dssp --SSEEEEEECCCCSCBHHHHHHTCS------CEEHHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEEEcCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999997543 6899999999999999999999
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-12 Score=123.73 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=66.6
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------------eEEEeccccCC
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------------~g~~~~~~~~~ 432 (549)
++|...+.||+|+||.||+|+... +.. .+++..
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~----- 79 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFEN----- 79 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecC-----
Confidence 567888899999999999998753 221 455555
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 80 ~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~~l~~lH 125 (283)
T 3bhy_A 80 KTDVVLILELVSGGELFDFLAEKE------SLTEDEATQFLKQILDGVHYLH 125 (283)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeecCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999997543 5899999999999999999999
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-12 Score=129.20 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=68.5
Q ss_pred ccccCcCCCccccCceecEEEEEeCCC-ce---------------------------------------eEEEeccccCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEK-WT---------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~---------------------------------------~g~~~~~~~~~ 432 (549)
..++|...+.||+|+||.||+|+.... .. ++++..
T Consensus 15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~----- 89 (345)
T 1xjd_A 15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQT----- 89 (345)
T ss_dssp -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEEC-----
T ss_pred ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe-----
Confidence 457899999999999999999998643 21 455555
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++... .+++.....++.|++.||+|||
T Consensus 90 ~~~~~lv~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH 135 (345)
T 1xjd_A 90 KENLFFVMEYLNGGDLMYHIQSCH------KFDLSRATFYAAEIILGLQFLH 135 (345)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998643 5899999999999999999999
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.2e-12 Score=122.32 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=66.8
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~ 436 (549)
++|...+.||+|+||.||+|+... +.. ++++.. .+..
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~ 77 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRR-----KRRL 77 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeec-----CCeE
Confidence 567888899999999999999854 322 566665 6788
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.++++... .+++.....++.|+++||+|||
T Consensus 78 ~lv~e~~~~~~l~~~~~~~~------~~~~~~~~~i~~~l~~~l~~lH 119 (311)
T 4agu_A 78 HLVFEYCDHTVLHELDRYQR------GVPEHLVKSITWQTLQAVNFCH 119 (311)
T ss_dssp EEEEECCSEEHHHHHHHTSS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCchHHHHHhhhc------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887543 5899999999999999999999
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.6e-12 Score=127.35 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=69.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce----------------------------------------eEEEeccccC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------------~g~~~~~~~~ 431 (549)
...++|...++||+|+||.||+|+...... ++++..
T Consensus 49 ~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~---- 124 (396)
T 4dc2_A 49 LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT---- 124 (396)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEEC----
T ss_pred CChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEE----
Confidence 356789999999999999999999865432 455555
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|..+++... .+++.....++.|++.||+|||
T Consensus 125 -~~~~~lV~E~~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~LH 170 (396)
T 4dc2_A 125 -ESRLFFVIEYVNGGDLMFHMQRQR------KLPEEHARFYSAEISLALNYLH 170 (396)
T ss_dssp -SSEEEEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEEcCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998643 5899999999999999999999
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=120.76 Aligned_cols=88 Identities=17% Similarity=0.115 Sum_probs=64.5
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cc-e-----------------------------------eEEEeccccCCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KW-T-----------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~-~-----------------------------------~g~~~~~~~~~~~ 434 (549)
...++|...+.||+|+||.||+|.... +. + ++++.. .+
T Consensus 12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 86 (303)
T 2vwi_A 12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVV-----KD 86 (303)
T ss_dssp -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEES-----SS
T ss_pred cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEee-----cC
Confidence 356789999999999999999998632 22 1 455555 66
Q ss_pred eEEEEEeecCCCCcccccccCC--CCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSN--NKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~--~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... .......+++..+..++.|+++||+|||
T Consensus 87 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH 138 (303)
T 2vwi_A 87 ELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH 138 (303)
T ss_dssp CEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999987421 0012346899999999999999999999
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-12 Score=127.35 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=67.9
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce---------------------------------------eEEEeccccCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT---------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------------~g~~~~~~~~~ 432 (549)
..++|...+.||+|+||.||+|+... +.. ++++..
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~----- 95 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQT----- 95 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEe-----
Confidence 45689999999999999999999754 322 455555
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++... .+++.....++.|++.||+|||
T Consensus 96 ~~~~~lv~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH 141 (353)
T 3txo_A 96 PDRLFFVMEFVNGGDLMFHIQKSR------RFDEARARFYAAEIISALMFLH 141 (353)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998654 5899999999999999999999
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-11 Score=124.35 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=69.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC-ce------------------------------------eEEEeccccCCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK-WT------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~------------------------------------~g~~~~~~~~~~~ 434 (549)
...++|...+.||+|+||.||+|..... .. ++++.. .+
T Consensus 30 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~ 104 (360)
T 3eqc_A 30 LKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-----DG 104 (360)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEE-----TT
T ss_pred cccccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEE-----CC
Confidence 3456899999999999999999998632 22 466665 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.++++... .+++.....++.++++||+|||
T Consensus 105 ~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~~i~~~l~~lh 148 (360)
T 3eqc_A 105 EISICMEHMDGGSLDQVLKKAG------RIPEQILGKVSIAVIKGLTYLR 148 (360)
T ss_dssp EEEEEECCCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998653 5889999999999999999999
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.9e-12 Score=126.87 Aligned_cols=81 Identities=15% Similarity=0.109 Sum_probs=67.0
Q ss_pred ccccCcCCCccccCceecEEEEEeC----CCce----------------------------------------eEEEecc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILG----EKWT----------------------------------------AGYSEGT 428 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~----~~~~----------------------------------------~g~~~~~ 428 (549)
..++|...+.||+|+||.||+|+.. ++.. .+++..
T Consensus 52 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~- 130 (355)
T 1vzo_A 52 GIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT- 130 (355)
T ss_dssp CGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE-
T ss_pred cccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEee-
Confidence 4478999999999999999999873 2221 344444
Q ss_pred ccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 429 DFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 429 ~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 131 ----~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH 176 (355)
T 1vzo_A 131 ----ETKLHLILDYINGGELFTHLSQRE------RFTEHEVQIYVGEIVLALEHLH 176 (355)
T ss_dssp ----TTEEEEEECCCCSCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CceEEEEeecCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999998643 5889999999999999999999
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=99.20 E-value=6.6e-12 Score=125.54 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=69.2
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~ 432 (549)
...++|...+.||+|+||.||+|+... +.. .+++..
T Consensus 38 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----- 112 (350)
T 1rdq_E 38 AQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKD----- 112 (350)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----
T ss_pred CCHHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc-----
Confidence 455789999999999999999999753 322 355555
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 113 ~~~~~lv~e~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH 158 (350)
T 1rdq_E 113 NSNLYMVMEYVAGGEMFSHLRRIG------RFSEPHARFYAAQIVLTFEYLH 158 (350)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998643 5889999999999999999999
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.3e-12 Score=123.68 Aligned_cols=83 Identities=25% Similarity=0.272 Sum_probs=63.2
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce---------------------------------eEEEeccccCCCceEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT---------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------~g~~~~~~~~~~~~~~ 437 (549)
...+.|...+.||+|+||.||+|.... +.. ++++.. ....+
T Consensus 26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 100 (314)
T 3com_A 26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFK-----NTDLW 100 (314)
T ss_dssp ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEEE
T ss_pred cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEe-----CCEEE
Confidence 456678888999999999999999864 322 466665 67889
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++.... ..+++..+..++.++++||.|||
T Consensus 101 lv~e~~~~~~L~~~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lH 142 (314)
T 3com_A 101 IVMEYCGAGSVSDIIRLRN-----KTLTEDEIATILQSTLKGLEYLH 142 (314)
T ss_dssp EEEECCTTEEHHHHHHHHT-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997432 46899999999999999999999
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-11 Score=119.91 Aligned_cols=88 Identities=16% Similarity=0.239 Sum_probs=64.5
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------------eEEEec
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------------AGYSEG 427 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------------~g~~~~ 427 (549)
..++.|...+.||+|+||.||+|+... +.. ++++..
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~ 85 (308)
T 3g33_A 6 MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCAT 85 (308)
T ss_dssp ----CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred ccccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeec
Confidence 356789999999999999999998532 221 344443
Q ss_pred cccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 428 TDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 428 ~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.........++||||++ |+|.+++.... ...+++..+..++.|+++||+|||
T Consensus 86 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~~----~~~~~~~~~~~i~~qi~~al~~lH 137 (308)
T 3g33_A 86 SRTDREIKVTLVFEHVD-QDLRTYLDKAP----PPGLPAETIKDLMRQFLRGLDFLH 137 (308)
T ss_dssp CCSSSEEEEEEEEECCC-CBHHHHHHTCC----TTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceeEEEEehhhh-cCHHHHHhhcc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11111225789999998 69999998654 344899999999999999999999
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.5e-12 Score=130.08 Aligned_cols=82 Identities=22% Similarity=0.210 Sum_probs=68.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~ 432 (549)
...++|...+.||+|+||.||+|.... +.. .+++..
T Consensus 145 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~----- 219 (446)
T 4ejn_A 145 VTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQT----- 219 (446)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEE-----
T ss_pred CChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEee-----
Confidence 356789999999999999999998643 221 455555
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++|||||++|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 220 ~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH 265 (446)
T 4ejn_A 220 HDRLCFVMEYANGGELFFHLSRER------VFSEDRARFYGAEIVSALDYLH 265 (446)
T ss_dssp TTEEEEEECCCSSCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeeCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999997643 6899999999999999999999
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=99.19 E-value=9.1e-12 Score=121.07 Aligned_cols=82 Identities=23% Similarity=0.279 Sum_probs=64.4
Q ss_pred cCcCCCccccCceecEEEEEeCCCce--------------------------------------eEEEeccccCCCceEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
.|...+.||+|+||.||+|....... ++++... .......+
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~~ 105 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCIV 105 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEE-SSSCEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccc-cCCCceEE
Confidence 35667789999999999998754432 3333321 12245689
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 106 lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH 146 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRFK------VMKIKVLRSWCRQILKGLQFLH 146 (290)
T ss_dssp EEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHcc------CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998643 5889999999999999999999
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.9e-12 Score=122.22 Aligned_cols=82 Identities=13% Similarity=0.238 Sum_probs=68.0
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce-------------------------------------eEEEeccccCCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT-------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-------------------------------------~g~~~~~~~~~~~ 434 (549)
...++|...+.||+|+||.||+|+..++.. ++++.. +.
T Consensus 18 ~l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~ 92 (311)
T 3niz_A 18 GLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHS-----ER 92 (311)
T ss_dssp CSSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECC-----SS
T ss_pred chHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEcc-----CC
Confidence 456788899999999999999999866543 455555 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++ +|.+++.... ..+++.....++.|+++||+|||
T Consensus 93 ~~~lv~e~~~~-~l~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~LH 136 (311)
T 3niz_A 93 CLTLVFEFMEK-DLKKVLDENK-----TGLQDSQIKIYLYQLLRGVAHCH 136 (311)
T ss_dssp CEEEEEECCSE-EHHHHHHTCT-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCC-CHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999984 8888887543 45889999999999999999999
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-11 Score=122.65 Aligned_cols=83 Identities=16% Similarity=0.276 Sum_probs=67.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce---------------------------------------------------
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------------------------- 421 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------------------- 421 (549)
..++|...+.||+|+||.||+|...+..+
T Consensus 29 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 29 YINDYRIIRTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp EETTEEEEEEEECCSSCCEEEEEETTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred ccCceEEEEEEcCCCCeEEEEEEcCCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 45688999999999999999998732211
Q ss_pred eEEEeccccCCCceEEEEEeecCCCCcccc------cccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 422 AGYSEGTDFKGIDFKAVVFDYMQNRSLEDW------PYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 422 ~g~~~~~~~~~~~~~~lv~ey~~~GsL~~~------l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++++.. .+..++||||+++|+|.++ +.... ...+++..+..++.|+++||+|||
T Consensus 109 ~~~~~~-----~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH 168 (348)
T 2pml_X 109 EGIITN-----YDEVYIIYEYMENDSILKFDEYFFVLDKNY----TCFIPIQVIKCIIKSVLNSFSYIH 168 (348)
T ss_dssp SEEEES-----SSEEEEEEECCTTCBSSEESSSEESSCSSS----CCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEee-----CCeEEEEEeccCCCcHHHHHHHhhhhhhcc----ccCCCHHHHHHHHHHHHHHHHHHh
Confidence 344444 5788999999999999999 55421 357899999999999999999999
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=99.19 E-value=3.5e-11 Score=118.47 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=64.7
Q ss_pred ccCcC-CCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceE
Q 039925 395 NEFSS-SNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 395 ~~~~~-~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~ 436 (549)
+.|.. ++.||+|+||.||+|.... +.. ++++.. .+..
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~-----~~~~ 86 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEE-----EDRF 86 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEee-----CCEE
Confidence 34555 4789999999999998642 221 456665 6788
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 87 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~lH 128 (316)
T 2ac3_A 87 YLVFEKMRGGSILSHIHKRR------HFNELEASVVVQDVASALDFLH 128 (316)
T ss_dssp EEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998643 5889999999999999999999
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.9e-12 Score=127.22 Aligned_cols=81 Identities=19% Similarity=0.130 Sum_probs=69.1
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~~ 433 (549)
..++|...+.||+|+||.||+|....... ++++.. .
T Consensus 13 ~~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~-----~ 87 (384)
T 4fr4_A 13 NFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQD-----E 87 (384)
T ss_dssp CGGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----S
T ss_pred ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-----C
Confidence 45678899999999999999999764331 456665 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++|+|.++++... .+++.....++.|++.||+|||
T Consensus 88 ~~~~lv~e~~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~LH 132 (384)
T 4fr4_A 88 EDMFMVVDLLLGGDLRYHLQQNV------HFKEETVKLFICELVMALDYLQ 132 (384)
T ss_dssp SEEEEEECCCTTEEHHHHHHTTC------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999998643 6899999999999999999999
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-11 Score=120.48 Aligned_cols=82 Identities=23% Similarity=0.283 Sum_probs=62.4
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce---------------------------------------------------
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------------------------- 421 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------------------- 421 (549)
..++|...+.||+|+||.||+|+......
T Consensus 11 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l 90 (298)
T 2zv2_A 11 QLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAIL 90 (298)
T ss_dssp EETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHH
T ss_pred eecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHH
Confidence 45678889999999999999997643211
Q ss_pred -----------eEEEeccccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 422 -----------AGYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 422 -----------~g~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++++.. ......++||||+++|+|.+++.. ..+++.....++.|+++||+|||
T Consensus 91 ~~l~h~~iv~~~~~~~~---~~~~~~~lv~e~~~~~~l~~~~~~-------~~~~~~~~~~~~~qi~~~l~~lH 154 (298)
T 2zv2_A 91 KKLDHPNVVKLVEVLDD---PNEDHLYMVFELVNQGPVMEVPTL-------KPLSEDQARFYFQDLIKGIEYLH 154 (298)
T ss_dssp HTCCCTTBCCEEEEEEC---SSSSEEEEEEECCTTCBSCCSSCS-------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCeEEEEEEc---CCCCEEEEEEecCCCCcHHHHhhc-------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 222222 124578999999999999998653 35899999999999999999999
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=121.22 Aligned_cols=83 Identities=13% Similarity=0.228 Sum_probs=63.2
Q ss_pred cccCcCCCccccCceecEEEEEeCCCc-e---------------------------------------eEEEeccccCCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKW-T---------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~---------------------------------------~g~~~~~~~~~~ 433 (549)
.++|...+.||+|+||.||+|...... . ++++... ..
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---~~ 80 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNE---EK 80 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC-----
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcC---CC
Confidence 467899999999999999999975432 1 4555321 14
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++| +.+++.... ...+++..+..++.|+++||+|||
T Consensus 81 ~~~~lv~e~~~~~-l~~~~~~~~----~~~~~~~~~~~~~~qi~~al~~LH 126 (305)
T 2wtk_C 81 QKMYMVMEYCVCG-MQEMLDSVP----EKRFPVCQAHGYFCQLIDGLEYLH 126 (305)
T ss_dssp -CEEEEEECCSEE-HHHHHHHST----TCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhccCC-HHHHHHhCc----ccccCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999987 777776433 346899999999999999999999
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-11 Score=122.33 Aligned_cols=79 Identities=22% Similarity=0.288 Sum_probs=65.2
Q ss_pred cccccCcCCCccccCceecEEEEEeC--C--Cc-e---------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG--E--KW-T---------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~--~--~~-~---------------------------------~g~~~~~~~~~~ 433 (549)
...+.|...+.||+|+||+||+|+.+ . +. + ++++.. .
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~-----~ 92 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRK-----N 92 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEE-----T
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEE-----C
Confidence 34577999999999999999999753 1 11 1 344555 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++|||||++|+|.++++ .+++.+...++.|++.|++|||
T Consensus 93 ~~~~lvmE~~~g~~L~~~~~---------~l~~~~~~~~~~qll~al~ylH 134 (361)
T 4f9c_A 93 DHVVIAMPYLEHESFLDILN---------SLSFQEVREYMLNLFKALKRIH 134 (361)
T ss_dssp TEEEEEEECCCCCCHHHHHT---------TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCCcccHHHHHc---------CCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999985 3788888999999999999999
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.1e-12 Score=125.06 Aligned_cols=88 Identities=18% Similarity=0.164 Sum_probs=66.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce-----------------------------------------eEEEecccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------------AGYSEGTDF 430 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------------~g~~~~~~~ 430 (549)
...+.|...+.||+|+||.||+|+...... ++++..
T Consensus 23 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~--- 99 (345)
T 3hko_A 23 ELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED--- 99 (345)
T ss_dssp HHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC---
T ss_pred hhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc---
Confidence 456788899999999999999998753321 566666
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCC----------------------------------CCCCCchhhhHHHHHHH
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKL----------------------------------KPSSLSMIRKLSTTIDV 476 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~----------------------------------~~~~l~~~~~~~ia~~v 476 (549)
.+..++||||+++|+|.+++....... ....+++.....++.|+
T Consensus 100 --~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi 177 (345)
T 3hko_A 100 --EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQI 177 (345)
T ss_dssp --SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHH
T ss_pred --CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHH
Confidence 678999999999999999986211000 01123566778899999
Q ss_pred HHHHHHhh
Q 039925 477 ASAIEYLR 484 (549)
Q Consensus 477 a~gl~yLH 484 (549)
++||+|||
T Consensus 178 ~~~l~~LH 185 (345)
T 3hko_A 178 FSALHYLH 185 (345)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999999
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-11 Score=118.41 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=65.7
Q ss_pred ccCcCCCccccCceecEEEEEeCCCce-------------------------------------eEEEeccccCCCceEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKWT-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
++|...+.||+|+||.||+|...++.. ++++.. .+..+
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~ 76 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHT-----KKRLV 76 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEEC-----SSCEE
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEcc-----CCeEE
Confidence 467778899999999999999864443 455655 67889
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++ +|.+++.... ..+++.....++.|+++||+|||
T Consensus 77 lv~e~~~~-~l~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH 117 (288)
T 1ob3_A 77 LVFEHLDQ-DLKKLLDVCE-----GGLESVTAKSFLLQLLNGIAYCH 117 (288)
T ss_dssp EEEECCSE-EHHHHHHTST-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCC-CHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999985 9999887543 46889999999999999999999
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=99.18 E-value=8e-12 Score=127.36 Aligned_cols=87 Identities=14% Similarity=0.223 Sum_probs=64.5
Q ss_pred ccccCcCC-CccccCceecEEEEEeCC-Cce-------------------------------eEEEeccccCCCceEEEE
Q 039925 393 VTNEFSSS-NMIGQGSFGSVYKGILGE-KWT-------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 393 ~~~~~~~~-~~lG~G~~g~Vy~~~~~~-~~~-------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
..++|... ++||+|+||.||+|.... +.. ++++.. .+.+....++|
T Consensus 59 ~~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~E~~~~~~~~~hp~iv~l~~~~~~-~~~~~~~~~lv 137 (400)
T 1nxk_A 59 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYEN-LYAGRKCLLIV 137 (400)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEE-EETTEEEEEEE
T ss_pred ccccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcchhHHHHHHHHHHhcCCCCcceEeEEEee-cccCCcEEEEE
Confidence 34455554 689999999999999753 322 333321 01124568999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.++++... ...+++..+..++.|+++||+|||
T Consensus 138 ~E~~~gg~L~~~l~~~~----~~~l~~~~~~~i~~qi~~aL~~LH 178 (400)
T 1nxk_A 138 MECLDGGELFSRIQDRG----DQAFTEREASEIMKSIGEAIQYLH 178 (400)
T ss_dssp EECCCSEEHHHHHHCC-------CCBHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCcHHHHHHHhC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998643 346999999999999999999999
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.9e-12 Score=125.47 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=67.8
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce----------------------------------------eEEEeccccCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------------~g~~~~~~~~~ 432 (549)
..++|...+.||+|+||.||+|+..+... .+++..
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~----- 92 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT----- 92 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEEC-----
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEc-----
Confidence 45688889999999999999999865321 344444
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++... .+++.....++.|++.||+|||
T Consensus 93 ~~~~~lv~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH 138 (353)
T 2i0e_A 93 MDRLYFVMEYVNGGDLMYHIQQVG------RFKEPHAVFYAAEIAIGLFFLQ 138 (353)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998643 5899999999999999999999
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.1e-12 Score=123.70 Aligned_cols=86 Identities=13% Similarity=0.224 Sum_probs=66.0
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~ 432 (549)
...+.|...+.||+|+||.||+|+... +.. ++++.... ..
T Consensus 9 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 87 (311)
T 3ork_A 9 HLSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET-PA 87 (311)
T ss_dssp EETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEE-TT
T ss_pred eecCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccC-CC
Confidence 345678889999999999999999643 221 33333210 01
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.++++... .+++.....++.|+++||+|||
T Consensus 88 ~~~~~lv~e~~~g~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH 133 (311)
T 3ork_A 88 GPLPYIVMEYVDGVTLRDIVHTEG------PMTPKRAIEVIADACQALNFSH 133 (311)
T ss_dssp EEEEEEEEECCCEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 123489999999999999998643 5899999999999999999999
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4.1e-12 Score=123.40 Aligned_cols=84 Identities=17% Similarity=0.103 Sum_probs=66.9
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~ 434 (549)
..++|...+.||+|+||.||+|.... +.. ++++.. ++
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~-----~~ 79 (290)
T 3fme_A 5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFR-----EG 79 (290)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SS
T ss_pred cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeec-----cC
Confidence 45788899999999999999999743 322 466665 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||++ |+|.++++... .....+++..+..++.|+++||+|||
T Consensus 80 ~~~lv~e~~~-~~l~~~l~~~~--~~~~~~~~~~~~~i~~qi~~~l~~lH 126 (290)
T 3fme_A 80 DVWICMELMD-TSLDKFYKQVI--DKGQTIPEDILGKIAVSIVKALEHLH 126 (290)
T ss_dssp SEEEEEECCS-EEHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEehhc-cchHHHHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 8899999998 58888776421 01246899999999999999999999
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-11 Score=128.42 Aligned_cols=82 Identities=13% Similarity=0.191 Sum_probs=66.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce-------------------------------------------------e
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT-------------------------------------------------A 422 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-------------------------------------------------~ 422 (549)
...+.|...+.||+|+||.||+|....+.. +
T Consensus 33 ~i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~ 112 (504)
T 3q5i_A 33 KIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLF 112 (504)
T ss_dssp CGGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred CcccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence 456788899999999999999998753221 3
Q ss_pred EEEeccccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 423 GYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 423 g~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+++.. ....++||||+++|+|.+++.... .+++..+..++.|++.||+|||
T Consensus 113 ~~~~~-----~~~~~lv~e~~~gg~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~lH 163 (504)
T 3q5i_A 113 DVFED-----KKYFYLVTEFYEGGELFEQIINRH------KFDECDAANIMKQILSGICYLH 163 (504)
T ss_dssp EEEEC-----SSEEEEEEECCTTCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEc-----CCEEEEEEecCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 44544 677899999999999999997643 5899999999999999999999
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.4e-12 Score=121.77 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=67.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCCC-ce---------------------------------------------eEEEe
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEK-WT---------------------------------------------AGYSE 426 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~---------------------------------------------~g~~~ 426 (549)
-.++|...+.||+|+||.||+|..... .. ++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 456788889999999999999987532 21 34454
Q ss_pred ccccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 427 GTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 427 ~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
. ....++||||+++|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 95 ~-----~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH 141 (298)
T 1phk_A 95 T-----NTFFFLVFDLMKKGELFDYLTEKV------TLSEKETRKIMRALLEVICALH 141 (298)
T ss_dssp C-----SSEEEEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred c-----CCeEEEEEeccCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 4 677899999999999999998643 5899999999999999999999
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=9.6e-12 Score=130.55 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=65.2
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce--------------------------------------eEEEeccccCCCc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------~g~~~~~~~~~~~ 434 (549)
..+.|...+.||+|+||.||+|+...... ++++.. ..
T Consensus 35 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~ 109 (494)
T 3lij_A 35 LSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFED-----KR 109 (494)
T ss_dssp HHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SS
T ss_pred hhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-----CC
Confidence 44568888999999999999999753221 566666 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 110 ~~~lv~e~~~~g~L~~~~~~~~------~~~~~~~~~i~~qi~~~l~~lH 153 (494)
T 3lij_A 110 NYYLVMECYKGGELFDEIIHRM------KFNEVDAAVIIKQVLSGVTYLH 153 (494)
T ss_dssp EEEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999987543 5889999999999999999999
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.8e-12 Score=126.93 Aligned_cols=82 Identities=23% Similarity=0.230 Sum_probs=68.1
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce----------------------------------------eEEEeccccC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------------~g~~~~~~~~ 431 (549)
...++|...+.||+|+||.||+|+...... ++++..
T Consensus 35 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~---- 110 (373)
T 2r5t_A 35 AKPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQT---- 110 (373)
T ss_dssp CCGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEEC----
T ss_pred CChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEe----
Confidence 355789999999999999999999764322 344444
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++... .+++.....++.|++.||+|||
T Consensus 111 -~~~~~lv~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH 156 (373)
T 2r5t_A 111 -ADKLYFVLDYINGGELFYHLQRER------CFLEPRARFYAAEIASALGYLH 156 (373)
T ss_dssp -SSEEEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998643 5888888999999999999999
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-11 Score=121.94 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=64.5
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce--------------------------------------------eEEEecc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------------------AGYSEGT 428 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------------~g~~~~~ 428 (549)
..++|...+.||+|+||.||+|....... ++++.
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-- 85 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-- 85 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEE--
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEc--
Confidence 34678888999999999999998754221 23333
Q ss_pred ccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 429 DFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 429 ~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++... ..+++.....++.|+++||+|||
T Consensus 86 ----~~~~~lv~e~~~~~~L~~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH 131 (322)
T 2ycf_A 86 ----AEDYYIVLELMEGGELFDKVVGN------KRLKEATCKLYFYQMLLAVQYLH 131 (322)
T ss_dssp ----SSSEEEEEECCTTEETHHHHSTT------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCceEEEEecCCCCcHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 23479999999999999998754 36889999999999999999999
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.7e-12 Score=126.54 Aligned_cols=82 Identities=23% Similarity=0.231 Sum_probs=66.7
Q ss_pred cccccCcCCCccccCceecEEEEEeC-CCce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG-EKWT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--------------------------------------~g~~~~~~~~~ 432 (549)
...+.|...+.||+|+||.||+|+.. ++.. ++++..
T Consensus 51 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~----- 125 (348)
T 1u5q_A 51 DPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR----- 125 (348)
T ss_dssp CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----
T ss_pred chhhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----
Confidence 44566888889999999999999864 3322 566666
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||++ |++.+++.... ..+++..+..++.|+++||+|||
T Consensus 126 ~~~~~lv~e~~~-g~l~~~l~~~~-----~~l~~~~~~~i~~qi~~aL~~LH 171 (348)
T 1u5q_A 126 EHTAWLVMEYCL-GSASDLLEVHK-----KPLQEVEIAAVTHGALQGLAYLH 171 (348)
T ss_dssp TTEEEEEEECCS-EEHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCC-CCHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999998 78888886433 46899999999999999999999
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-11 Score=123.94 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=68.5
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce----------------------------------------eEEEeccccCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------------~g~~~~~~~~~ 432 (549)
..++|...+.||+|+||.||+|+...... ++++..
T Consensus 7 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~----- 81 (345)
T 3a8x_A 7 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT----- 81 (345)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----
T ss_pred chhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEe-----
Confidence 34678889999999999999999864321 455555
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 82 ~~~~~lv~e~~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~LH 127 (345)
T 3a8x_A 82 ESRLFFVIEYVNGGDLMFHMQRQR------KLPEEHARFYSAEISLALNYLH 127 (345)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998643 5899999999999999999999
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-11 Score=121.70 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=67.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCceE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
..+.|...+.||+|+||.||+|+... +.. .+++.. ....
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 81 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYES-----TTHY 81 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEEC-----SSEE
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhccc-----CCEE
Confidence 34567888899999999999998752 322 455555 6788
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.+++.... .+++.....++.|+++||.|||
T Consensus 82 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH 123 (304)
T 2jam_A 82 YLVMQLVSGGELFDRILERG------VYTEKDASLVIQQVLSAVKYLH 123 (304)
T ss_dssp EEEECCCCSCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCccHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987543 5889999999999999999999
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-11 Score=122.31 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=69.2
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~ 433 (549)
...++|...+.||+|+||.||+|+... +.. ++++.. .
T Consensus 22 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~ 96 (331)
T 4aaa_A 22 QSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKK-----K 96 (331)
T ss_dssp BCGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----T
T ss_pred hhhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeec-----C
Confidence 566788889999999999999999864 222 566666 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++++|.+++.... .+++..+..++.|+++||+|||
T Consensus 97 ~~~~lv~e~~~~~~l~~~~~~~~------~~~~~~~~~~~~qi~~~l~~LH 141 (331)
T 4aaa_A 97 KRWYLVFEFVDHTILDDLELFPN------GLDYQVVQKYLFQIINGIGFCH 141 (331)
T ss_dssp TEEEEEEECCSEEHHHHHHHSTT------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCcchHHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999998876433 5899999999999999999999
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-11 Score=121.35 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=68.1
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCc
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~ 434 (549)
.++|...+.||+|+||.||+|+... +.. ++++.. ..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~-----~~ 79 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD-----AQ 79 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEEC-----SS
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEe-----CC
Confidence 4678888999999999999999753 322 456665 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.++++... .+++.....++.|++.||+|||
T Consensus 80 ~~~lv~e~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH 123 (318)
T 1fot_A 80 QIFMIMDYIEGGELFSLLRKSQ------RFPNPVAKFYAAEVCLALEYLH 123 (318)
T ss_dssp EEEEEECCCCSCBHHHHHHHTS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998643 5889999999999999999999
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-11 Score=122.59 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=65.7
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccc---cCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTD---FKG 432 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~---~~~ 432 (549)
...+|...+.||+|+||.||+|+... +.. ++++.... ...
T Consensus 26 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~ 105 (337)
T 3ll6_A 26 GELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG 105 (337)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred cCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence 34578888999999999999999743 222 34442110 122
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+. |+|.+++.... ....+++..+..++.|+++||+|||
T Consensus 106 ~~~~~lv~e~~~-g~L~~~l~~~~---~~~~~~~~~~~~i~~qi~~~l~~LH 153 (337)
T 3ll6_A 106 QAEFLLLTELCK-GQLVEFLKKME---SRGPLSCDTVLKIFYQTCRAVQHMH 153 (337)
T ss_dssp SEEEEEEEECCS-EEHHHHHHHHH---TTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEecC-CCHHHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456799999996 79999987532 2346999999999999999999999
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.2e-11 Score=120.07 Aligned_cols=85 Identities=15% Similarity=0.281 Sum_probs=54.0
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~ 436 (549)
.++|...+.||+|+||.||+|.... +.. ++++.. .+..
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~ 78 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHT-----ENKL 78 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECC-----TTEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEE-----CCeE
Confidence 4678899999999999999998753 221 455655 6788
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||++ |+|.+++...........+++..+..++.|+++||+|||
T Consensus 79 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH 125 (317)
T 2pmi_A 79 TLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH 125 (317)
T ss_dssp EEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999 699999875431122346889999999999999999999
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-11 Score=123.30 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=67.2
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~~ 433 (549)
..+.|...+.||+|+||.||+|...++.. ++++.. .
T Consensus 7 ~~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~-----~ 81 (343)
T 3dbq_A 7 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT-----D 81 (343)
T ss_dssp SSCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----S
T ss_pred ecCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEee-----C
Confidence 34568888999999999999998766543 455555 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||| +.+|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 82 ~~~~lv~e-~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~al~~lH 125 (343)
T 3dbq_A 82 QYIYMVME-CGNIDLNSWLKKKK------SIDPWERKSYWKNMLEAVHTIH 125 (343)
T ss_dssp SEEEEEEC-CCSEEHHHHHHHSC------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEe-CCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999 57889999998653 6889999999999999999999
|
| >2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-11 Score=119.43 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=65.7
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~ 436 (549)
++|...+.||+|+||.||+|+... +.. ++++.. .+..
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 77 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-----ENKL 77 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEec-----CCce
Confidence 578888899999999999998753 322 455655 6788
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||++ |+|.+++.... ...+++..+..++.|+++||+|||
T Consensus 78 ~lv~e~~~-~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH 120 (299)
T 2r3i_A 78 YLVFEFLH-QDLKKFMDASA----LTGIPLPLIKSYLFQLLQGLAFCH 120 (299)
T ss_dssp EEEEECCS-EEHHHHHHHTT----TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEccc-CCHHHHHHhhh----ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998 69999987643 245888899999999999999999
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-11 Score=121.61 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=67.5
Q ss_pred ccccCcCCCccccCceecEEEEEeC-CCce--------------------------------------------eEEEec
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILG-EKWT--------------------------------------------AGYSEG 427 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--------------------------------------------~g~~~~ 427 (549)
..++|...+.||+|+||.||+|+.. ++.. ++++..
T Consensus 92 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 171 (365)
T 2y7j_A 92 FYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYES 171 (365)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEB
T ss_pred hhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEee
Confidence 3456888899999999999999985 3332 344444
Q ss_pred cccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 428 TDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 428 ~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... .+++..+..++.|+++||.|||
T Consensus 172 -----~~~~~lv~e~~~g~~L~~~l~~~~------~l~~~~~~~i~~qi~~~L~~LH 217 (365)
T 2y7j_A 172 -----SSFMFLVFDLMRKGELFDYLTEKV------ALSEKETRSIMRSLLEAVSFLH 217 (365)
T ss_dssp -----SSEEEEEECCCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCEEEEEEEeCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999998543 6899999999999999999999
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.8e-11 Score=120.13 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=68.8
Q ss_pred cccccCcCCCccccCceecEEEEEeC------CCce-----------------------------------eEEEecccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG------EKWT-----------------------------------AGYSEGTDF 430 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~-----------------------------------~g~~~~~~~ 430 (549)
...+.|...+.||+|+||.||+|++. .+.. ++++..
T Consensus 62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~--- 138 (365)
T 3e7e_A 62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF--- 138 (365)
T ss_dssp CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC---
T ss_pred ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHHHHHHHHHHHhhhhhhhhhhhhheeeec---
Confidence 45677888899999999999999532 2221 455655
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++|||||++|+|.++++.... .....++|..+..|+.|+++||+|||
T Consensus 139 --~~~~~lv~e~~~~g~L~~~l~~~~~-~~~~~l~~~~~~~i~~qi~~~L~~lH 189 (365)
T 3e7e_A 139 --QNGSVLVGELYSYGTLLNAINLYKN-TPEKVMPQGLVISFAMRMLYMIEQVH 189 (365)
T ss_dssp --SSCEEEEECCCCSCBHHHHHHHHHT-STTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcEEEEeccCCCcHHHHHHHhhc-ccccCCCHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999975320 12346999999999999999999999
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-11 Score=130.63 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=70.5
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~ 432 (549)
...++|...++||+|+||.||+|+... +.. ++++..
T Consensus 181 ~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~----- 255 (576)
T 2acx_A 181 VTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYET----- 255 (576)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----
T ss_pred ccccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEee-----
Confidence 456789999999999999999999753 332 455555
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... ...+++..+..++.||+.||+|||
T Consensus 256 ~~~l~lVmEy~~gg~L~~~l~~~~----~~~l~e~~~~~i~~qIl~aL~yLH 303 (576)
T 2acx_A 256 KDALCLVLTLMNGGDLKFHIYHMG----QAGFPEARAVFYAAEICCGLEDLH 303 (576)
T ss_dssp SSEEEEEECCCCSCBHHHHHHSSS----SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999997643 345899999999999999999999
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-11 Score=119.77 Aligned_cols=80 Identities=21% Similarity=0.167 Sum_probs=67.2
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCce
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~ 435 (549)
.+.|...+.||+|+||.||+|+... +.. ++++.. ...
T Consensus 21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 95 (287)
T 2wei_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILED-----SSS 95 (287)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SSE
T ss_pred hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeC-----CCe
Confidence 4578888999999999999998753 221 455655 678
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+++|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH 138 (287)
T 2wei_A 96 FYIVGELYTGGELFDEIIKRK------RFSEHDAARIIKQVFSGITYMH 138 (287)
T ss_dssp EEEEECCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEccCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999987543 5899999999999999999999
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-11 Score=120.13 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=66.1
Q ss_pred cccCcCCCccccCceecEEEEEeC-CCce----------------------------------eEEEeccc--------c
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILG-EKWT----------------------------------AGYSEGTD--------F 430 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~----------------------------------~g~~~~~~--------~ 430 (549)
.++|...+.||+|+||.||+|+.. ++.. ++++.... .
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 84 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAV 84 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhccc
Confidence 467888899999999999999975 3322 34433210 0
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
......++||||+++|+|.++++... ..+++.....++.|+++||+|||
T Consensus 85 ~~~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~LH 133 (303)
T 1zy4_A 85 KKKSTLFIQMEYCENGTLYDLIHSEN-----LNQQRDEYWRLFRQILEALSYIH 133 (303)
T ss_dssp -CEEEEEEEEECCCSCBHHHHHHHSC-----GGGCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCceEEEEecCCCCCHHHhhhccc-----cccchHHHHHHHHHHHHHHHHHH
Confidence 11456899999999999999998543 45778888999999999999999
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-11 Score=120.90 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=66.5
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce--------------------------------------------eEEEec
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------------------AGYSEG 427 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------------~g~~~~ 427 (549)
...++|...+.||+|+||.||+|+...... ++++..
T Consensus 40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~ 119 (320)
T 3a99_A 40 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER 119 (320)
T ss_dssp CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC
T ss_pred CccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEec
Confidence 456678899999999999999998643221 334443
Q ss_pred cccCCCceEEEEEeecCC-CCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 428 TDFKGIDFKAVVFDYMQN-RSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 428 ~~~~~~~~~~lv~ey~~~-GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+.+ |+|.+++.... .+++..+..++.|+++||+|||
T Consensus 120 -----~~~~~lv~e~~~~~~~L~~~l~~~~------~l~~~~~~~i~~qi~~~L~~LH 166 (320)
T 3a99_A 120 -----PDSFVLILERPEPVQDLFDFITERG------ALQEELARSFFWQVLEAVRHCH 166 (320)
T ss_dssp -----SSEEEEEEECCSSEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCcEEEEEEcCCCCccHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 5678999999986 89999998643 5889999999999999999999
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-11 Score=133.16 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=67.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc-e---------------------------------------eEEEeccccCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW-T---------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~---------------------------------------~g~~~~~~~~~ 432 (549)
..++|...++||+|+||.||+|+..+.. . .+++..
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~----- 413 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT----- 413 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBC-----
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEe-----
Confidence 4568889999999999999999976432 1 233333
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++... .+++..+..++.||+.||+|||
T Consensus 414 ~~~~~lV~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH 459 (674)
T 3pfq_A 414 MDRLYFVMEYVNGGDLMYHIQQVG------RFKEPHAVFYAAEIAIGLFFLQ 459 (674)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCcCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999998653 5899999999999999999999
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-11 Score=127.54 Aligned_cols=81 Identities=21% Similarity=0.166 Sum_probs=68.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~ 434 (549)
..+.|...+.||+|+||.||+|+... +.. ++++.. ..
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~ 94 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILED-----SS 94 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SS
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEc-----CC
Confidence 44578888999999999999999753 322 466665 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... .+++.....++.|+++||.|||
T Consensus 95 ~~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~i~~qi~~al~~lH 138 (486)
T 3mwu_A 95 SFYIVGELYTGGELFDEIIKRK------RFSEHDAARIIKQVFSGITYMH 138 (486)
T ss_dssp EEEEEECCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999987643 5899999999999999999999
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-11 Score=119.12 Aligned_cols=81 Identities=19% Similarity=0.308 Sum_probs=66.9
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC-ce-------------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK-WT-------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~-------------------------------------~g~~~~~~~~~~ 433 (549)
...++|...+.||+|+||.||+|+.... .. ++++.. .
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~ 105 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHH-----N 105 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEE-----T
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEec-----C
Confidence 4667899999999999999999986432 21 455655 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||++ |+|.+++.... .+++..+..++.|+++||+|||
T Consensus 106 ~~~~lv~e~~~-~~L~~~~~~~~------~~~~~~~~~i~~ql~~~l~~LH 149 (329)
T 3gbz_A 106 HRLHLIFEYAE-NDLKKYMDKNP------DVSMRVIKSFLYQLINGVNFCH 149 (329)
T ss_dssp TEEEEEEECCS-EEHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCC-CCHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999998 59999998653 5889999999999999999999
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-11 Score=120.89 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=60.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-e---------------------------------------------eEEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-T---------------------------------------------AGYS 425 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~---------------------------------------------~g~~ 425 (549)
...++|...+.||+|+||.||+|+..... . ++++
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~ 107 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF 107 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence 34567999999999999999999864322 1 2223
Q ss_pred eccccCCCceEEEEEee-cCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 426 EGTDFKGIDFKAVVFDY-MQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 426 ~~~~~~~~~~~~lv~ey-~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.. .+..++|||| +++|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 108 ~~-----~~~~~~v~e~~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH 156 (312)
T 2iwi_A 108 ET-----QEGFMLVLERPLPAQDLFDYITEKG------PLGEGPSRCFFGQVVAAIQHCH 156 (312)
T ss_dssp ----------CEEEEECCSSEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred ec-----CCeEEEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 22 4567899999 89999999998643 5899999999999999999999
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-11 Score=121.74 Aligned_cols=82 Identities=11% Similarity=0.044 Sum_probs=67.6
Q ss_pred cccccCcCCCccccCceecEEEEEeC----CCce---------------------------------------eEEEecc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG----EKWT---------------------------------------AGYSEGT 428 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~----~~~~---------------------------------------~g~~~~~ 428 (549)
...++|...+.||+|+||.||+|+.. ++.. ++++..
T Consensus 14 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~- 92 (327)
T 3a62_A 14 IRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQT- 92 (327)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEEC-
T ss_pred CCHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEc-
Confidence 34567889999999999999999873 2222 345554
Q ss_pred ccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 429 DFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 429 ~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 93 ----~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~al~~lH 138 (327)
T 3a62_A 93 ----GGKLYLILEYLSGGELFMQLEREG------IFMEDTACFYLAEISMALGHLH 138 (327)
T ss_dssp ----SSCEEEEEECCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCEEEEEEeCCCCCcHHHHHHhCC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999998643 5888899999999999999999
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-11 Score=121.67 Aligned_cols=79 Identities=15% Similarity=0.304 Sum_probs=64.9
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
++|...+.||+|+||.||+|+... +.. ++++.. ....+
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~ 76 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHT-----EKSLT 76 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEEC-----SSCEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEee-----CCEEE
Confidence 467788899999999999999753 321 455555 67789
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||++ |+|.+++.... ..+++.....++.|+++||+|||
T Consensus 77 lv~e~~~-~~l~~~~~~~~-----~~~~~~~~~~~~~qi~~aL~~LH 117 (324)
T 3mtl_A 77 LVFEYLD-KDLKQYLDDCG-----NIINMHNVKLFLFQLLRGLAYCH 117 (324)
T ss_dssp EEEECCS-EEHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecccc-cCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999998 59999887643 46889999999999999999999
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-11 Score=124.13 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=65.8
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCCCc
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~~~ 434 (549)
...|...+.||+|+||.||+|...++.. ++++.. .+
T Consensus 55 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~-----~~ 129 (390)
T 2zmd_A 55 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT-----DQ 129 (390)
T ss_dssp TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----SS
T ss_pred CCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEec-----CC
Confidence 4468889999999999999998765543 345555 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||| +.+|+|.+++.... .+++..+..++.||++||+|||
T Consensus 130 ~~~lv~E-~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~lH 172 (390)
T 2zmd_A 130 YIYMVME-CGNIDLNSWLKKKK------SIDPWERKSYWKNMLEAVHTIH 172 (390)
T ss_dssp EEEEEEE-CCSEEHHHHHHHCS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEe-cCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999 57899999998643 6888899999999999999999
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.2e-11 Score=116.50 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=62.9
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~ 436 (549)
++|...+.||+|+||.||+|+... +.. ++++.. ....
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~ 76 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-----DKKL 76 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEe-----CCEE
Confidence 467788899999999999999754 221 466665 6788
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++ ++.+++.... ..+++.....++.|+++||+|||
T Consensus 77 ~lv~e~~~~-~l~~~~~~~~-----~~l~~~~~~~~~~ql~~~l~~lH 118 (292)
T 3o0g_A 77 TLVFEFCDQ-DLKKYFDSCN-----GDLDPEIVKSFLFQLLKGLGFCH 118 (292)
T ss_dssp EEEEECCSE-EHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCC-CHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999986 5555554432 46899999999999999999999
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-11 Score=127.69 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=68.2
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~ 433 (549)
..+.|...+.||+|+||.||+|+... +.. ++++.. .
T Consensus 24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~ 98 (484)
T 3nyv_A 24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFED-----K 98 (484)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----S
T ss_pred ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-----C
Confidence 45678888999999999999998752 221 455655 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 99 ~~~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~i~~qi~~~l~~lH 143 (484)
T 3nyv_A 99 GYFYLVGEVYTGGELFDEIISRK------RFSEVDAARIIRQVLSGITYMH 143 (484)
T ss_dssp SEEEEEECCCCSCBHHHHHHTCS------CCBHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999997543 6899999999999999999999
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=99.12 E-value=6.1e-11 Score=117.23 Aligned_cols=88 Identities=11% Similarity=0.184 Sum_probs=67.9
Q ss_pred cccccCcCCCccccCceecEEEEEeC--CCce----------------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG--EKWT----------------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~--~~~~----------------------------------------~g~~~~~~ 429 (549)
.+.++|...+.||+|+||.||+|+.. ++.. ++++....
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~ 87 (326)
T 1blx_A 8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 87 (326)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence 56678999999999999999999973 3322 34443111
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.......++||||++ |+|.+++.... ...+++..+..++.|+++||+|||
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~lH 137 (326)
T 1blx_A 88 TDRETKLTLVFEHVD-QDLTTYLDKVP----EPGVPTETIKDMMFQLLRGLDFLH 137 (326)
T ss_dssp CSSEEEEEEEEECCS-CBHHHHHHHSC----TTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEEecCC-CCHHHHHHhcc----cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 112567899999998 79999998653 245899999999999999999999
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-11 Score=120.24 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=68.9
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-e---------------------------------------eEEEeccccC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-T---------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~---------------------------------------~g~~~~~~~~ 431 (549)
...+.|...+.||+|+||.||+|+..... . ++++..
T Consensus 32 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~---- 107 (360)
T 3llt_A 32 LLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMY---- 107 (360)
T ss_dssp EETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEE----
T ss_pred EecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeE----
Confidence 45678999999999999999999984332 1 455555
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+ +|+|.+++.... ...+++.....++.|+++||+|||
T Consensus 108 -~~~~~lv~e~~-~~~L~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~LH 154 (360)
T 3llt_A 108 -YDHMCLIFEPL-GPSLYEIITRNN----YNGFHIEDIKLYCIEILKALNYLR 154 (360)
T ss_dssp -TTEEEEEECCC-CCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCeeEEEEcCC-CCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 67889999999 999999998654 245889999999999999999999
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3.4e-11 Score=121.03 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=67.9
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce----------------------------------------------eEEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------------------AGYS 425 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------------------~g~~ 425 (549)
...+.|...+.||+|+||.||+|...++.. ++++
T Consensus 19 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 98 (362)
T 3pg1_A 19 AMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIF 98 (362)
T ss_dssp HTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEE
T ss_pred HhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeE
Confidence 567899999999999999999998655432 2444
Q ss_pred eccccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 426 EGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 426 ~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...+.......++||||++ |+|.+++.... ..+++..+..++.|+++||+|||
T Consensus 99 ~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH 151 (362)
T 3pg1_A 99 VHFEEPAMHKLYLVTELMR-TDLAQVIHDQR-----IVISPQHIQYFMYHILLGLHVLH 151 (362)
T ss_dssp EECCTTTCCEEEEEEECCS-EEHHHHHHCTT-----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeccCCCcceEEEEEccCC-CCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 3221122346799999998 68888887543 46899999999999999999999
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-11 Score=125.89 Aligned_cols=83 Identities=18% Similarity=0.119 Sum_probs=71.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCc-e--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKW-T--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-~--------------------------------------~g~~~~~~~~~ 432 (549)
..+++|...++||+|+||.||+|+..... . ++++..
T Consensus 71 ~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~----- 145 (437)
T 4aw2_A 71 LHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD----- 145 (437)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC-----
T ss_pred CChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-----
Confidence 56789999999999999999999986533 2 466666
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++|||||++|+|.++++... ..+++.....++.|++.||+|||
T Consensus 146 ~~~~~lV~Ey~~gg~L~~~l~~~~-----~~l~e~~~~~~~~qi~~aL~~LH 192 (437)
T 4aw2_A 146 DNNLYLVMDYYVGGDLLTLLSKFE-----DRLPEEMARFYLAEMVIAIDSVH 192 (437)
T ss_dssp SSEEEEEECCCTTCBHHHHHHTTT-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCcHHHHHHHcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999998633 46899999999999999999999
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.8e-11 Score=123.53 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=67.4
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce-----------------------------------------eEEEecccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------------AGYSEGTDF 430 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------------~g~~~~~~~ 430 (549)
.....|...+.||+|+||.||+|....... ++++..
T Consensus 94 ~~~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~--- 170 (429)
T 3kvw_A 94 HVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF--- 170 (429)
T ss_dssp EETTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEE---
T ss_pred cccCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeeccc---
Confidence 345578889999999999999998754321 345555
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||++ |+|.+++.... ...+++..+..++.|+++||+|||
T Consensus 171 --~~~~~lv~e~~~-~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~aL~~LH 217 (429)
T 3kvw_A 171 --RNHICMTFELLS-MNLYELIKKNK----FQGFSLPLVRKFAHSILQCLDALH 217 (429)
T ss_dssp --TTEEEEEECCCC-CBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCeEEEEEeccC-CCHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999996 69999988654 345899999999999999999999
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-11 Score=120.54 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=69.1
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEecccc-CCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDF-KGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~-~~~~ 434 (549)
...+.|...+.||+|+||.||+|+... +.. ++++..... ....
T Consensus 21 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~ 100 (326)
T 2x7f_A 21 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDD 100 (326)
T ss_dssp CCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCC
T ss_pred CCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccc
Confidence 567889999999999999999999843 322 344433110 0135
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... ...+++.....++.|++.||+|||
T Consensus 101 ~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH 146 (326)
T 2x7f_A 101 QLWLVMEFCGAGSVTDLIKNTK----GNTLKEEWIAYICREILRGLSHLH 146 (326)
T ss_dssp EEEEEEECCTTEEHHHHHHHSG----GGCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCcHHHHHHhcc----cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999998643 246888899999999999999999
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-11 Score=118.20 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=67.6
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce---------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------------~g~~~~~~~~~ 432 (549)
...+.|...+.||+|+||.||+|...++.. ++++..
T Consensus 25 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~----- 99 (313)
T 3cek_A 25 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT----- 99 (313)
T ss_dssp ETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEEC-----
T ss_pred eccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeec-----
Confidence 355678899999999999999998766543 355555
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||| +.+|+|.+++.... .+++..+..++.|+++||+|||
T Consensus 100 ~~~~~lv~e-~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH 144 (313)
T 3cek_A 100 DQYIYMVME-CGNIDLNSWLKKKK------SIDPWERKSYWKNMLEAVHTIH 144 (313)
T ss_dssp SSEEEEEEC-CCSEEHHHHHHHCS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEe-cCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 677899999 67899999998643 6889999999999999999999
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-11 Score=124.46 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=69.6
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC-ce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK-WT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~--------------------------------------~g~~~~~~~~~ 432 (549)
...++|...+.||+|+||.||+|+.... .. ++++..
T Consensus 66 ~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~----- 140 (410)
T 3v8s_A 66 MKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD----- 140 (410)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC-----
T ss_pred cCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE-----
Confidence 5678999999999999999999998643 22 466666
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.++++.. .+++.....++.|++.||+|||
T Consensus 141 ~~~~~lV~E~~~gg~L~~~l~~~-------~~~e~~~~~~~~qi~~aL~~LH 185 (410)
T 3v8s_A 141 DRYLYMVMEYMPGGDLVNLMSNY-------DVPEKWARFYTAEVVLALDAIH 185 (410)
T ss_dssp SSEEEEEECCCTTEEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCcHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999753 3788888999999999999999
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=99.08 E-value=4.3e-11 Score=125.91 Aligned_cols=86 Identities=19% Similarity=0.197 Sum_probs=70.3
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~ 432 (549)
...++|...++||+|+||.||+|+... +.. .+++..
T Consensus 182 ~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~----- 256 (543)
T 3c4z_A 182 MGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFET----- 256 (543)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----
T ss_pred CChhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEee-----
Confidence 456788899999999999999999853 332 355555
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|+|.+++.... .....+++.....++.||+.||+|||
T Consensus 257 ~~~l~lVmE~~~gg~L~~~l~~~~--~~~~~l~e~~~~~~~~qi~~aL~~LH 306 (543)
T 3c4z_A 257 KTDLCLVMTIMNGGDIRYHIYNVD--EDNPGFQEPRAIFYTAQIVSGLEHLH 306 (543)
T ss_dssp SSEEEEEECCCTTCBHHHHHHTSS--TTSCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEeccCCCHHHHHHHhh--cccccccHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999987543 12346899999999999999999999
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=8.9e-11 Score=116.52 Aligned_cols=82 Identities=15% Similarity=0.273 Sum_probs=66.7
Q ss_pred ccccCcCCCccccCceecEEEEEe-C-CCce----------------------------------------eEEEecccc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGIL-G-EKWT----------------------------------------AGYSEGTDF 430 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~-~-~~~~----------------------------------------~g~~~~~~~ 430 (549)
..+.|...+.||+|+||.||+|.. . ++.. .+++..
T Consensus 12 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~--- 88 (339)
T 1z57_A 12 LSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH--- 88 (339)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE---
T ss_pred ccCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc---
Confidence 446788899999999999999987 2 2321 344444
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+ +|+|.+++.... ...+++..+..++.|+++||+|||
T Consensus 89 --~~~~~lv~e~~-~~~l~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~lH 135 (339)
T 1z57_A 89 --HGHICIVFELL-GLSTYDFIKENG----FLPFRLDHIRKMAYQICKSVNFLH 135 (339)
T ss_dssp --TTEEEEEEECC-CCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcEEEEEcCC-CCCHHHHHHhcC----CCCCcHHHHHHHHHHHHHHHHHHH
Confidence 67889999999 899999998653 346889999999999999999999
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.3e-11 Score=121.87 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=37.5
Q ss_pred EEEEEeecCCCCcccccccCCC-CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNN-KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~-~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+ +|+|.+++..... ......++|..++.|+.|+++||+|||
T Consensus 175 ~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 223 (377)
T 3byv_A 175 RFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH 223 (377)
T ss_dssp EEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 78999999 6899999985330 001234567888999999999999999
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-11 Score=122.72 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=70.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~ 432 (549)
...++|...+.||+|+||.||+|+... +.. ++++..
T Consensus 58 ~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~----- 132 (412)
T 2vd5_A 58 LQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD----- 132 (412)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC-----
T ss_pred CChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee-----
Confidence 567899999999999999999999853 332 455665
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++|+|.++++... ..+++.....++.+++.||+|||
T Consensus 133 ~~~~~lVmE~~~gg~L~~~l~~~~-----~~l~~~~~~~~~~qi~~aL~~LH 179 (412)
T 2vd5_A 133 ENYLYLVMEYYVGGDLLTLLSKFG-----ERIPAEMARFYLAEIVMAIDSVH 179 (412)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHHS-----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998643 36889999999999999999999
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-10 Score=115.17 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=65.0
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~ 434 (549)
..++|...+.||+|+||.||+|.... +.. ++++.. .+
T Consensus 20 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~-----~~ 94 (327)
T 3aln_A 20 TAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFR-----EG 94 (327)
T ss_dssp CSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEEC-----SS
T ss_pred CHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEe-----CC
Confidence 45678889999999999999999853 322 566666 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++ +|.+++..... .....+++..+..++.++++||.|||
T Consensus 95 ~~~lv~e~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~i~~~i~~~l~~lH 142 (327)
T 3aln_A 95 DCWICMELMST-SFDKFYKYVYS-VLDDVIPEEILGKITLATVKALNHLK 142 (327)
T ss_dssp EEEEEECCCSE-EHHHHHHHHHH-TTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeecCC-ChHHHHHHHHh-hhcccCcHHHHHHHHHHHHHHHHHHh
Confidence 88999999985 78777753110 01246889999999999999999999
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-10 Score=114.75 Aligned_cols=81 Identities=15% Similarity=0.230 Sum_probs=64.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce---------------------------------eEEEeccccCCCceEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT---------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------~g~~~~~~~~~~~~~~ 437 (549)
...++|...+.||+|+||.||+|+... +.. .+++... .....+
T Consensus 33 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~---~~~~~~ 109 (330)
T 3nsz_A 33 GNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDP---VSRTPA 109 (330)
T ss_dssp EEGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECT---TTCCEE
T ss_pred cCCCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccchHHHHHHHHHHHHcCCCCCEEEeeeeeccC---CCCceE
Confidence 456789999999999999999998643 322 3444331 145679
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.++++ .+++.....++.|+++||+|||
T Consensus 110 lv~e~~~~~~l~~~~~---------~~~~~~~~~~~~qi~~~l~~lH 147 (330)
T 3nsz_A 110 LVFEHVNNTDFKQLYQ---------TLTDYDIRFYMYEILKALDYCH 147 (330)
T ss_dssp EEEECCCCCCHHHHGG---------GCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccCchhHHHHHH---------hCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999885 3778889999999999999999
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-10 Score=118.37 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=67.5
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce-----------------------------------------eEEEecccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------------AGYSEGTDF 430 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------------~g~~~~~~~ 430 (549)
...++|...+.||+|+||.||+|+...... .+++..
T Consensus 51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~--- 127 (382)
T 2vx3_A 51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF--- 127 (382)
T ss_dssp EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE---
T ss_pred EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc---
Confidence 456789999999999999999998753321 344444
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||++ |+|.+++.... ...+++..+..++.|++.||.|||
T Consensus 128 --~~~~~lv~e~~~-~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~al~~lH 174 (382)
T 2vx3_A 128 --RNHLCLVFEMLS-YNLYDLLRNTN----FRGVSLNLTRKFAQQMCTALLFLA 174 (382)
T ss_dssp --TTEEEEEEECCC-CBHHHHHHHTT----TSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred --CCceEEEEecCC-CCHHHHHhhcC----cCCCCHHHHHHHHHHHHHHHHHhc
Confidence 678899999996 59999998653 245899999999999999999998
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-10 Score=115.42 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=62.5
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce----------------------------------------eEEEeccccC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT----------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~----------------------------------------~g~~~~~~~~ 431 (549)
..+.|...+.||+|+||.||+|+... +.. ++++..
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---- 83 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH---- 83 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECC----
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEee----
Confidence 45678889999999999999998753 221 344444
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++ +|.+++.... ..+++..+..++.|+++||+|||
T Consensus 84 -~~~~~lv~e~~~~-~l~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH 129 (346)
T 1ua2_A 84 -KSNISLVFDFMET-DLEVIIKDNS-----LVLTPSHIKAYMLMTLQGLEYLH 129 (346)
T ss_dssp -TTCCEEEEECCSE-EHHHHHTTCC-----SSCCSSHHHHHHHHHHHHHHHHH
T ss_pred -CCceEEEEEcCCC-CHHHHHHhcC-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 6678999999996 8888887543 46889999999999999999999
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.3e-09 Score=106.21 Aligned_cols=245 Identities=10% Similarity=-0.005 Sum_probs=139.6
Q ss_pred ecC-ccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccc---------
Q 039925 48 CLT-PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETH--------- 117 (549)
Q Consensus 48 ~lp-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~--------- 117 (549)
.|. .+|.++++|+.+.|.. .++..-..+|.++++|+.++|..+ ++..-...|..+.+| +.+.+..+-
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L-~~i~~p~~l~~i~~~aF~ 137 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYAL-KSILLPLMLKSIGVEAFK 137 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC-CCCCCCTTCCEECTTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccc-hhhcccCceeeecceeee
Confidence 454 4788999999999975 477444568999999999999765 553334567777777 666554331
Q ss_pred ------------cccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeC
Q 039925 118 ------------LSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFL 184 (549)
Q Consensus 118 ------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l 184 (549)
+......+|.++++|+.+.+..+... .-...|.++.+|+.+.+..+ +.......|.+.. |+.+.+
T Consensus 138 ~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 138 GCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred cccccccccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 11112345677778888887655433 55566777778888777665 3434445566666 666665
Q ss_pred CCCcCcccCchhhhhcCCCCcEeeecccccccc--cc-----------------------cCcccccEEEcccccccccc
Q 039925 185 PENSFTGNLPLEIGVTLPKGRNYYILLLAQKLY--WS-----------------------DVSTTATIIAMGGNQISGTI 239 (549)
Q Consensus 185 ~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~--~l-----------------------~~~~~L~~L~l~~n~l~~~~ 239 (549)
..+... +....+ ...+|+.+.+......+. .+ .....++.+....+.+ .
T Consensus 216 ~~~~~~--i~~~~~-~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i---~ 289 (394)
T 4fs7_A 216 PNSLYY--LGDFAL-SKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV---P 289 (394)
T ss_dssp CTTCCE--ECTTTT-TTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE---C
T ss_pred CCCceE--eehhhc-ccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceee---c
Confidence 544322 111112 233444444433111110 00 1112233333222211 1
Q ss_pred ChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCC
Q 039925 240 TLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRN 311 (549)
Q Consensus 240 ~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 311 (549)
...|..+ .+|+.+.+..+ ++ .++ ...|.++.+|+.++|..+ ++..-..+|.++.+|+.+++..|
T Consensus 290 ~~~F~~~--~~L~~i~l~~~-i~-~I~---~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 290 EKTFYGC--SSLTEVKLLDS-VK-FIG---EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTTTC--TTCCEEEECTT-CC-EEC---TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccc--ccccccccccc-cc-eec---hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 2345556 67777777654 33 232 356777778888877644 55344567777788888777655
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=8.9e-11 Score=118.40 Aligned_cols=45 Identities=9% Similarity=-0.106 Sum_probs=37.3
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhh------HHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRK------LSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~------~~ia~~va~gl~yLH 484 (549)
...++|||||+ |+|.++++... ..+.+..+ ..++.|+++||+|||
T Consensus 161 ~~~~lv~e~~~-~~L~~~l~~~~-----~~~~~~~~~~~~vk~~i~~qi~~aL~~LH 211 (371)
T 3q60_A 161 ANYLLLMPAAS-VDLELLFSTLD-----FVYVFRGDEGILALHILTAQLIRLAANLQ 211 (371)
T ss_dssp EEEEEEECCCS-EEHHHHHHHHH-----HSCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEecCCC-CCHHHHHHHhc-----cccchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34799999999 99999998643 23566666 788999999999999
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=6e-10 Score=121.53 Aligned_cols=84 Identities=21% Similarity=0.382 Sum_probs=63.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCC--Cce------------------------------------eEEEeccccCCCc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE--KWT------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~--~~~------------------------------------~g~~~~~~~~~~~ 434 (549)
..+.|...+.||+|+||.||+|.... +.. ++++...+..+..
T Consensus 78 ~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 157 (681)
T 2pzi_A 78 VAGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDP 157 (681)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCE
T ss_pred eCCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCc
Confidence 45789999999999999999998752 322 4555542211222
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.. .++|.+++.++.||++||+|||
T Consensus 158 ~~~lv~E~~~g~~L~~~~~~--------~l~~~~~~~~~~qi~~aL~~lH 199 (681)
T 2pzi_A 158 VGYIVMEYVGGQSLKRSKGQ--------KLPVAEAIAYLLEILPALSYLH 199 (681)
T ss_dssp EEEEEEECCCCEECC----C--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCcHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999988753 4899999999999999999999
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-10 Score=117.96 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=62.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------eEEEecccc---------
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------AGYSEGTDF--------- 430 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------~g~~~~~~~--------- 430 (549)
...+.|...+.||+|+||.||+|+... +.. ++++.....
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~ 83 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPP 83 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHTTCCCTTBCCEEEEEEEC-----------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHHHcCCCCccchhheeeecCcccccccccc
Confidence 356788999999999999999998743 322 344432110
Q ss_pred ------------------------CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 ------------------------KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ------------------------~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
......++||||++ |+|.+.++... .....+++.....++.|+++||+|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~--~~~~~l~~~~~~~i~~qi~~aL~~LH 158 (383)
T 3eb0_A 84 DDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFI--RSGRSIPMNLISIYIYQLFRAVGFIH 158 (383)
T ss_dssp --------------------------CCEEEEEECCCS-EEHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12345789999999 58887776321 01346899999999999999999999
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-10 Score=113.60 Aligned_cols=85 Identities=13% Similarity=0.191 Sum_probs=59.9
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccc------
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTD------ 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~------ 429 (549)
...+.|...+.||+|+||.||+|+... +.. ++++....
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 87 (320)
T 2i6l_A 8 DLGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDD 87 (320)
T ss_dssp EETTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC-
T ss_pred ccCCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccc
Confidence 345678888999999999999999864 221 34432110
Q ss_pred ---cCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 ---FKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ---~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.......++||||++ |+|.+++... .+++.....++.|+++||+|||
T Consensus 88 ~~~~~~~~~~~lv~e~~~-~~L~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH 137 (320)
T 2i6l_A 88 VGSLTELNSVYIVQEYME-TDLANVLEQG-------PLLEEHARLFMYQLLRGLKYIH 137 (320)
T ss_dssp ---CCSCSEEEEEEECCS-EEHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCceeEEeeccC-CCHHHHhhcC-------CccHHHHHHHHHHHHHHHHHHH
Confidence 012467899999998 6999998743 4888999999999999999999
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-10 Score=113.64 Aligned_cols=82 Identities=11% Similarity=0.248 Sum_probs=64.5
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-C-c-e---------------------------------------eEEEecccc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-K-W-T---------------------------------------AGYSEGTDF 430 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~-~-~---------------------------------------~g~~~~~~~ 430 (549)
..++|...+.||+|+||.||+|.... + . + .+++..
T Consensus 17 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~--- 93 (355)
T 2eu9_A 17 LQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF--- 93 (355)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE---
T ss_pred ecccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee---
Confidence 45678888999999999999998743 2 1 2 233444
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+ +|++.+++.... ...+++..+..++.|+++||+|||
T Consensus 94 --~~~~~lv~e~~-~~~l~~~l~~~~----~~~~~~~~~~~i~~qi~~~L~~lH 140 (355)
T 2eu9_A 94 --HGHMCIAFELL-GKNTFEFLKENN----FQPYPLPHVRHMAYQLCHALRFLH 140 (355)
T ss_dssp --TTEEEEEEECC-CCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCeEEEEEecc-CCChHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56889999999 677777776543 246899999999999999999999
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-10 Score=115.09 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=57.2
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~ 433 (549)
...++|...+.||+|+||.||+|.... +.. ++++.. .
T Consensus 22 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-----~ 96 (318)
T 2dyl_A 22 AEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFIT-----N 96 (318)
T ss_dssp CCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----S
T ss_pred hhhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEec-----C
Confidence 345678888999999999999999853 322 566666 6
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+ ++.+..+.... ...+++..+..++.|+++||+|||
T Consensus 97 ~~~~lv~e~~-~~~~~~l~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH 141 (318)
T 2dyl_A 97 TDVFIAMELM-GTCAEKLKKRM-----QGPIPERILGKMTVAIVKALYYLK 141 (318)
T ss_dssp SEEEEEECCC-SEEHHHHHHHH-----TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecc-CCcHHHHHHHh-----ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999 34444443322 246889999999999999999999
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-10 Score=113.71 Aligned_cols=85 Identities=15% Similarity=0.186 Sum_probs=65.8
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce-------------------------------------eEEEeccccCCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT-------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-------------------------------------~g~~~~~~~~~~~ 434 (549)
...+.|...+.||+|+||.||+|....... ++++.........
T Consensus 24 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 103 (364)
T 3qyz_A 24 DVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK 103 (364)
T ss_dssp CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred cccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence 445678899999999999999998753322 3444432222234
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||++ |+|.++++.. .+++..+..++.|+++||+|||
T Consensus 104 ~~~iv~e~~~-~~L~~~l~~~-------~~~~~~~~~i~~qi~~aL~~LH 145 (364)
T 3qyz_A 104 DVYIVQDLME-TDLYKLLKTQ-------HLSNDHICYFLYQILRGLKYIH 145 (364)
T ss_dssp CEEEEEECCS-EEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcccC-cCHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999998 5999998753 4899999999999999999999
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.7e-10 Score=113.90 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=66.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~ 434 (549)
...++|...+.||+|+||.||+|+... +.. ++++....+....
T Consensus 8 ~i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 87 (353)
T 2b9h_A 8 NISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN 87 (353)
T ss_dssp CSCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred ccccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence 456789999999999999999999763 322 3444332222236
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||++ |+|.+++... .+++..+..++.|+++||+|||
T Consensus 88 ~~~lv~e~~~-~~L~~~~~~~-------~~~~~~~~~~~~qi~~~L~~LH 129 (353)
T 2b9h_A 88 EVYIIQELMQ-TDLHRVISTQ-------MLSDDHIQYFIYQTLRAVKVLH 129 (353)
T ss_dssp CEEEEECCCS-EEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeccC-ccHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999998 6899988753 4889999999999999999999
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-10 Score=115.65 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=63.5
Q ss_pred ccccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEecccc-C
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDF-K 431 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~-~ 431 (549)
|...+.|...+.||+|+||.||+|.... +.. ++++..... .
T Consensus 38 ~~l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 117 (371)
T 4exu_A 38 WELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLR 117 (371)
T ss_dssp EEEETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSST
T ss_pred ecccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcc
Confidence 4667789999999999999999998753 222 344543110 0
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....++||||++ |+|.+++. ..+++..+..++.|+++||+|||
T Consensus 118 ~~~~~~lv~e~~~-~~l~~~~~--------~~~~~~~~~~i~~qi~~aL~~LH 161 (371)
T 4exu_A 118 NFYDFYLVMPFMQ-TDLQKIMG--------MEFSEEKIQYLVYQMLKGLKYIH 161 (371)
T ss_dssp TCCCCEEEEECCC-EEHHHHTT--------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEEcccc-ccHHHHhh--------cCCCHHHHHHHHHHHHHHHHHHH
Confidence 0112399999998 68888764 24889999999999999999999
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=98.96 E-value=9e-10 Score=111.01 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=62.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccc-cCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTD-FKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~-~~~~ 433 (549)
..++|...+.||+|+||.||+|.... +.. ++++.... ....
T Consensus 23 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 102 (371)
T 2xrw_A 23 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF 102 (371)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTC
T ss_pred hhhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccc
Confidence 45678889999999999999998643 221 34444311 0112
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++ +|.+++.. .+++.....++.|+++||+|||
T Consensus 103 ~~~~lv~e~~~~-~l~~~~~~--------~~~~~~~~~i~~qi~~al~~lH 144 (371)
T 2xrw_A 103 QDVYIVMELMDA-NLCQVIQM--------ELDHERMSYLLYQMLCGIKHLH 144 (371)
T ss_dssp CEEEEEEECCSE-EHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEcCCC-CHHHHHhh--------ccCHHHHHHHHHHHHHHHHHHH
Confidence 367999999984 78888752 3788899999999999999999
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-10 Score=114.87 Aligned_cols=85 Identities=14% Similarity=0.217 Sum_probs=59.1
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccc-cCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTD-FKG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~-~~~ 432 (549)
...+.|...+.||+|+||.||+|.... +.. ++++.... ...
T Consensus 22 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~ 101 (367)
T 1cm8_A 22 EVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDD 101 (367)
T ss_dssp CCBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTT
T ss_pred eecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCcccc
Confidence 566788899999999999999998743 322 34443310 001
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+ +++|.++++.. .+++.....++.|+++||+|||
T Consensus 102 ~~~~~lv~e~~-~~~L~~~~~~~-------~l~~~~~~~~~~qi~~~L~~LH 145 (367)
T 1cm8_A 102 FTDFYLVMPFM-GTDLGKLMKHE-------KLGEDRIQFLVYQMLKGLRYIH 145 (367)
T ss_dssp CCCCEEEEECC-SEEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEecC-CCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 13469999999 88999998753 4889999999999999999999
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.6e-10 Score=113.84 Aligned_cols=85 Identities=11% Similarity=0.120 Sum_probs=64.2
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce---------------------------------------------eEEEec
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT---------------------------------------------AGYSEG 427 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------------------~g~~~~ 427 (549)
.++|...+.||+|+||.||+|+... +.. ++++..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH 97 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence 4578888999999999999999643 221 122222
Q ss_pred cccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 428 TDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 428 ~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.. ......++||||+ +|+|.+++.... ...+++..+..++.|++.||+|||
T Consensus 98 ~~-~~~~~~~lv~e~~-~~~L~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~lH 148 (373)
T 1q8y_A 98 KG-PNGVHVVMVFEVL-GENLLALIKKYE----HRGIPLIYVKQISKQLLLGLDYMH 148 (373)
T ss_dssp EE-TTEEEEEEEECCC-CEEHHHHHHHTT----TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cC-CCCceEEEEEecC-CCCHHHHHHHhh----ccCCcHHHHHHHHHHHHHHHHHHH
Confidence 00 0123689999999 999999998643 245889999999999999999999
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.1e-10 Score=113.18 Aligned_cols=86 Identities=12% Similarity=0.172 Sum_probs=45.8
Q ss_pred ccccEEEccccccccccChhhh---hccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccC
Q 039925 223 TTATIIAMGGNQISGTITLGIK---KLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGY 299 (549)
Q Consensus 223 ~~L~~L~l~~n~l~~~~~~~~~---~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 299 (549)
++|+.|+|.+|.+.+..+..+. .+ ++|+.|+|+.|.+.+..+..++..+..+++|+.|+|++|.++...-..+..
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~--~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDIL--PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSG--GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccC--CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 3566666666666543333332 23 667777777776664322222333445667777777777666433333332
Q ss_pred -CCCCCEEEccCCc
Q 039925 300 -YQNLMELSVSRNK 312 (549)
Q Consensus 300 -l~~L~~L~Ls~N~ 312 (549)
+ ...+++++|.
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3456666655
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-09 Score=108.71 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=63.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEecccc---C
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDF---K 431 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~---~ 431 (549)
..++|...+.||+|+||.||+|+... +.. ++++..... .
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 94 (351)
T 3mi9_A 15 EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR 94 (351)
T ss_dssp BGGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC------
T ss_pred cccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeecccccccc
Confidence 44678888999999999999999743 322 344443110 0
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....++||||+++ ++.+.+.... ..+++..+..++.|+++||+|||
T Consensus 95 ~~~~~~lv~e~~~~-~l~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~LH 141 (351)
T 3mi9_A 95 CKGSIYLVFDFCEH-DLAGLLSNVL-----VKFTLSEIKRVMQMLLNGLYYIH 141 (351)
T ss_dssp --CEEEEEEECCSE-EHHHHHHCTT-----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEeccCC-CHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 13467999999985 7777776543 45899999999999999999999
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.2e-10 Score=120.23 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=64.5
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccc-cCCCc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTD-FKGID 434 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~-~~~~~ 434 (549)
..++|...+.||+|+||.||+|.... +.. ++++.... ....+
T Consensus 12 ~~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~ 91 (676)
T 3qa8_A 12 TCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPND 91 (676)
T ss_dssp -----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTS
T ss_pred CCCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCC
Confidence 44789999999999999999998643 221 22222111 11245
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... ....+++..+..++.++++||+|||
T Consensus 92 ~~~LVmEy~~ggsL~~~L~~~~---~~~~lse~~i~~I~~QLl~aL~yLH 138 (676)
T 3qa8_A 92 LPLLAMEYCEGGDLRKYLNQFE---NCCGLKEGPIRTLLSDISSALRYLH 138 (676)
T ss_dssp SCCCEEECCSSCBHHHHHHSSS---CTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHhcc---cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998654 2346889999999999999999999
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.3e-10 Score=111.87 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=62.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEecccc-CC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDF-KG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~-~~ 432 (549)
...++|...+.||+|+||.||+|+... +.. ++++..... ..
T Consensus 21 ~l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 100 (353)
T 3coi_A 21 ELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRN 100 (353)
T ss_dssp EEETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGG
T ss_pred ccCceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccc
Confidence 456788899999999999999998753 222 344443100 00
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||++ |+|.+++.. .+++..+..++.|+++||+|||
T Consensus 101 ~~~~~lv~e~~~-~~l~~~~~~--------~~~~~~~~~i~~qi~~al~~LH 143 (353)
T 3coi_A 101 FYDFYLVMPFMQ-TDLQKIMGL--------KFSEEKIQYLVYQMLKGLKYIH 143 (353)
T ss_dssp CCCCEEEEECCS-EEGGGTTTS--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEecccc-CCHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHH
Confidence 123599999998 688888752 4889999999999999999999
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-09 Score=111.96 Aligned_cols=87 Identities=15% Similarity=0.222 Sum_probs=60.6
Q ss_pred ccccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCC
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~ 432 (549)
+...++|...+.||+|+||.||+|+... +.. ++++.......
T Consensus 49 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 128 (458)
T 3rp9_A 49 WQIPDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEK 128 (458)
T ss_dssp CCSCTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTT
T ss_pred CccCCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCccc
Confidence 4667889999999999999999998653 222 34443322222
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+. |+|.++++.. ..+++.....++.||++||+|||
T Consensus 129 ~~~~~lv~e~~~-~~L~~~~~~~------~~l~~~~~~~~~~qi~~aL~~LH 173 (458)
T 3rp9_A 129 FDELYVVLEIAD-SDFKKLFRTP------VYLTELHIKTLLYNLLVGVKYVH 173 (458)
T ss_dssp CCCEEEEECCCS-EEHHHHHHSS------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeccc-cchhhhcccC------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 457899999975 7999998754 36899999999999999999999
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.2e-10 Score=115.72 Aligned_cols=82 Identities=13% Similarity=0.301 Sum_probs=62.3
Q ss_pred cccccCcCCCccccCceecE-EEEEeCCCce--------------------------------eEEEeccccCCCceEEE
Q 039925 392 TVTNEFSSSNMIGQGSFGSV-YKGILGEKWT--------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~V-y~~~~~~~~~--------------------------------~g~~~~~~~~~~~~~~l 438 (549)
....+|...++||+|+||.| |++...+..+ ++++.. ....++
T Consensus 21 i~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~-----~~~~~l 95 (432)
T 3p23_A 21 VGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKD-----RQFQYI 95 (432)
T ss_dssp ETTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEEECHHHHHHHHHSCCCTTBCCEEEEEEE-----TTEEEE
T ss_pred EccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHHHHHHHHHHHHhccCCCCcCeEEEEEec-----CCEEEE
Confidence 35567888999999999985 4554444333 455555 678899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||++ |+|.+++.... ....+.....++.|+++||+|||
T Consensus 96 v~E~~~-g~L~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH 135 (432)
T 3p23_A 96 AIELCA-ATLQEYVEQKD-----FAHLGLEPITLLQQTTSGLAHLH 135 (432)
T ss_dssp EEECCS-EEHHHHHHSSS-----CCCCSSCHHHHHHHHHHHHHHHH
T ss_pred EEECCC-CCHHHHHHhcC-----CCccchhHHHHHHHHHHHHHHHH
Confidence 999997 69999998654 23455567789999999999999
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.3e-10 Score=114.33 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=62.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce-------------------------------eEEEecccc-CCCceEEEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT-------------------------------AGYSEGTDF-KGIDFKAVVF 440 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-------------------------------~g~~~~~~~-~~~~~~~lv~ 440 (549)
....|...+.||+|+||.||+|+...+.. ++++..... ......++||
T Consensus 38 ~~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~ 117 (394)
T 4e7w_A 38 REIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVL 117 (394)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEE
T ss_pred ccceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcchHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEe
Confidence 34568889999999999999999854432 344433111 1133478999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||++++.+....+... ....+++.....++.|+++||+|||
T Consensus 118 e~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~qi~~aL~~LH 158 (394)
T 4e7w_A 118 EYVPETVYRASRHYAK---LKQTMPMLLIKLYMYQLLRSLAYIH 158 (394)
T ss_dssp ECCSEEHHHHHHHHHH---TTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eccCccHHHHHHHHHh---hcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999765443332111 1246889999999999999999999
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=110.32 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=63.0
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce-------------------------------------------eEEEeccc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT-------------------------------------------AGYSEGTD 429 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-------------------------------------------~g~~~~~~ 429 (549)
..+.|...+.||+|+||.||+|+...... ++++...
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~- 113 (397)
T 1wak_A 35 FNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKIS- 113 (397)
T ss_dssp ETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEE-
T ss_pred cCCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeec-
Confidence 34678888999999999999998754322 2222210
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.......++||||+ +|++.+++.... ...+++..+..++.|+++||+|||
T Consensus 114 ~~~~~~~~lv~e~~-~~~l~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~lH 163 (397)
T 1wak_A 114 GVNGTHICMVFEVL-GHHLLKWIIKSN----YQGLPLPCVKKIIQQVLQGLDYLH 163 (397)
T ss_dssp ETTEEEEEEEECCC-CCBHHHHHHHTT----TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEecc-CccHHHHHHhcc----cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00145789999999 666766665432 246899999999999999999999
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=3.8e-10 Score=113.52 Aligned_cols=86 Identities=13% Similarity=0.159 Sum_probs=57.8
Q ss_pred ccccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccc-cC
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTD-FK 431 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~-~~ 431 (549)
|...+.|...+.||+|+||.||+|.... +.. ++++.... ..
T Consensus 25 ~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 104 (367)
T 2fst_X 25 WEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLE 104 (367)
T ss_dssp EEEETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGG
T ss_pred cCCCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccc
Confidence 4667889999999999999999998643 221 34443210 01
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....++|+||+ +++|.++++.. .+++..+..++.|+++||+|||
T Consensus 105 ~~~~~~lv~e~~-~~~L~~~~~~~-------~l~~~~~~~i~~qi~~aL~~LH 149 (367)
T 2fst_X 105 EFNDVYLVTHLM-GADLNNIVKCQ-------KLTDDHVQFLIYQILRGLKYIH 149 (367)
T ss_dssp GCCCCEEEEECC-CEECC-----C-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeccc-CCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 124579999998 78999998753 4899999999999999999999
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-09 Score=112.76 Aligned_cols=84 Identities=17% Similarity=0.095 Sum_probs=62.0
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC-ce-------------------------------------eEEEecccc-CC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK-WT-------------------------------------AGYSEGTDF-KG 432 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~-~~-------------------------------------~g~~~~~~~-~~ 432 (549)
...+.|...+.||+|+||.||+|..... .. ++++..... ..
T Consensus 59 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~ 138 (464)
T 3ttj_A 59 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEE 138 (464)
T ss_dssp EEETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTT
T ss_pred eecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCcccc
Confidence 4567888899999999999999986532 21 344433110 11
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++|||||+++ +.+.+.. .+++.++..++.|+++||+|||
T Consensus 139 ~~~~~lv~E~~~~~-l~~~~~~--------~l~~~~~~~~~~qil~aL~~lH 181 (464)
T 3ttj_A 139 FQDVYLVMELMDAN-LCQVIQM--------ELDHERMSYLLYQMLCGIKHLH 181 (464)
T ss_dssp CCEEEEEEECCSEE-HHHHHTS--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCC-HHHHHhh--------cCCHHHHHHHHHHHHHHHHHHH
Confidence 24679999999865 5555542 3788999999999999999999
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.91 E-value=8e-10 Score=110.79 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=52.9
Q ss_pred cccccCcCCCccccCceecEEEEEeCC-Cce----------------------------------eEEEecccc--CCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGE-KWT----------------------------------AGYSEGTDF--KGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~----------------------------------~g~~~~~~~--~~~~ 434 (549)
...++|...+.||+|+||.||+|+... +.. ++++..... ....
T Consensus 20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 99 (360)
T 3e3p_A 20 KEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDI 99 (360)
T ss_dssp HHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCE
T ss_pred hhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhccccccccce
Confidence 466789999999999999999999753 322 455543211 1122
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||++++ +...+.... .....+++.....++.|++.|+.|||
T Consensus 100 ~~~lv~e~~~~~-l~~~~~~~~--~~~~~~~~~~~~~~~~qi~~al~~lH 146 (360)
T 3e3p_A 100 YLNVVMEYVPDT-LHRCCRNYY--RRQVAPPPILIKVFLFQLIRSIGCLH 146 (360)
T ss_dssp EEEEEEECCSCB-HHHHHHHHH--TTTCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEeeccccc-HHHHHHHHh--hcccCCCHHHHHHHHHHHHHHHHHHh
Confidence 378999999964 444333211 01246788889999999999999999
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.7e-10 Score=114.59 Aligned_cols=81 Identities=22% Similarity=0.309 Sum_probs=57.1
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~ 433 (549)
..++|...+.||+|+||.||+|.... +.. ++++... ..
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~---~~ 83 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRAD---ND 83 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECT---TS
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecC---CC
Confidence 34678888999999999999998643 222 3444431 13
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++|||||+ |+|.++++.. .+++..+..++.|+++||+|||
T Consensus 84 ~~~~lv~e~~~-~~L~~~~~~~-------~~~~~~~~~i~~qi~~~L~~LH 126 (388)
T 3oz6_A 84 RDVYLVFDYME-TDLHAVIRAN-------ILEPVHKQYVVYQLIKVIKYLH 126 (388)
T ss_dssp SCEEEEEECCS-EEHHHHHHHT-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecccC-cCHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 46899999998 6899998753 4889999999999999999999
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.8e-09 Score=108.65 Aligned_cols=86 Identities=15% Similarity=0.180 Sum_probs=67.5
Q ss_pred cccccCcCCCccccCceecEEEEEeCCCce--------------------------------------eEEEeccccCCC
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------~g~~~~~~~~~~ 433 (549)
...++|...+.||+|+||.||+|+...... ++++........
T Consensus 23 ~i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 102 (432)
T 3n9x_A 23 HVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKF 102 (432)
T ss_dssp CCCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTC
T ss_pred eecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcC
Confidence 567789999999999999999998754322 344433211122
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||++ |+|.++++.. ..+++.....++.|+++||.|||
T Consensus 103 ~~~~lv~e~~~-~~L~~~~~~~------~~l~~~~~~~i~~qil~aL~~LH 146 (432)
T 3n9x_A 103 DELYIVLEIAD-SDLKKLFKTP------IFLTEEHIKTILYNLLLGENFIH 146 (432)
T ss_dssp CCEEEEEECCS-EEHHHHHHSS------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEecCC-cCHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 56899999987 5999999754 36899999999999999999999
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.3e-10 Score=110.50 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=42.2
Q ss_pred CccccCCCCCCEEEccCCcce---------ecCCccccCCCCCCEeecccccccccCCcccccccCccceeeeccccccc
Q 039925 50 TPHVGNFGYLRFINLVDNNFR---------GEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSG 120 (549)
Q Consensus 50 p~~~~~l~~L~~L~L~~n~l~---------~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~ 120 (549)
.+++..+++|+.|.+..+... +.+...+..+++|+.|+|++|.-. .++. + .+++| ++|+|..|.+..
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L-~~L~L~~~~l~~ 207 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNL-KSLEIISGGLPD 207 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTC-SEEEEECSBCCH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCC-cEEEEecCCCCh
Confidence 344556777888877554221 112333445566666666665211 1222 2 25555 666666555543
Q ss_pred ccccccC--CCCCCCEEEee
Q 039925 121 QLLDFIG--NPSAIQVMIFK 138 (549)
Q Consensus 121 ~~~~~~~--~l~~L~~L~L~ 138 (549)
.....+. .+++|++|+|+
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHHHHccCCCCcEEEEe
Confidence 3222222 45556666554
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-09 Score=109.38 Aligned_cols=86 Identities=21% Similarity=0.216 Sum_probs=54.8
Q ss_pred ccCcC-CCccccCceecEEEEEeCCC---c-e--------------------------------eEEEeccccCCCceEE
Q 039925 395 NEFSS-SNMIGQGSFGSVYKGILGEK---W-T--------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 395 ~~~~~-~~~lG~G~~g~Vy~~~~~~~---~-~--------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+.|.. +++||+|+||.||+|++.+. . + ++++... .....+
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~---~~~~~~ 96 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSH---ADRKVW 96 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCCTTBCCCCEEEEET---TTTEEE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCCCCeeeEeeEEecC---CCCeEE
Confidence 34544 56899999999999997632 1 1 3455321 156789
Q ss_pred EEEeecCCCCcccccccCC---CCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSN---NKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~---~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||++ |+|.+++.... .......+++..+..++.|++.||+|||
T Consensus 97 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH 145 (405)
T 3rgf_A 97 LLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH 145 (405)
T ss_dssp EEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999987 58888775322 0011235899999999999999999999
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-09 Score=108.57 Aligned_cols=82 Identities=17% Similarity=0.089 Sum_probs=55.7
Q ss_pred CcCCCccccCceecEEEEEeCCCce---------------------------------eEEEeccccCCCceEEEEEeec
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEKWT---------------------------------AGYSEGTDFKGIDFKAVVFDYM 443 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------~g~~~~~~~~~~~~~~lv~ey~ 443 (549)
|...++||+|+||+||.+...++.. ++++.. ....++||||+
T Consensus 17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~-----~~~~~lv~E~~ 91 (434)
T 2rio_A 17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYCSETT-----DRFLYIALELC 91 (434)
T ss_dssp EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGGHHHHHHHHHHHHHHTTSTTBCCEEEEEEC-----SSEEEEEECCC
T ss_pred eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHHHHHHHHHHHHHhccCCCCcCeEEEEEec-----CCeEEEEEecC
Confidence 3456789999999997655444432 455555 67889999999
Q ss_pred CCCCcccccccCCCCCCC-CCCchhhhHHHHHHHHHHHHHhh
Q 039925 444 QNRSLEDWPYQSNNKLKP-SSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 444 ~~GsL~~~l~~~~~~~~~-~~l~~~~~~~ia~~va~gl~yLH 484 (549)
. |+|.+++......... ...++...+.++.||++||+|||
T Consensus 92 ~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH 132 (434)
T 2rio_A 92 N-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH 132 (434)
T ss_dssp S-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH
T ss_pred C-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH
Confidence 6 6999999865410000 11244456789999999999999
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=98.79 E-value=3.3e-09 Score=108.72 Aligned_cols=89 Identities=18% Similarity=0.279 Sum_probs=62.1
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------eEEEecccc-CCCceEEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------AGYSEGTDF-KGIDFKAVV 439 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------~g~~~~~~~-~~~~~~~lv 439 (549)
....|...+.||+|+||.||+|+... +.. ++++..... ......++|
T Consensus 52 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv 131 (420)
T 1j1b_A 52 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLV 131 (420)
T ss_dssp EEEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEE
T ss_pred ccceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEee
Confidence 34468888999999999999999853 332 344432110 112346799
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++ ++.+.+.... .....+++.....++.|+++||+|||
T Consensus 132 ~e~~~~-~l~~~~~~~~--~~~~~l~~~~~~~~~~qi~~aL~~LH 173 (420)
T 1j1b_A 132 LDYVPE-TVYRVARHYS--RAKQTLPVIYVKLYMYQLFRSLAYIH 173 (420)
T ss_dssp EECCCE-EHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccc-cHHHHHHHHh--hccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999996 5666554211 01246899999999999999999999
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.3e-07 Score=92.06 Aligned_cols=109 Identities=13% Similarity=0.098 Sum_probs=73.2
Q ss_pred cccCCC-CCCEEEccCCcceecCCccccCCCCCCEeeccccc---ccccCCcccccccCccceeeecccccccccccccC
Q 039925 52 HVGNFG-YLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNH---FSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIG 127 (549)
Q Consensus 52 ~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~ 127 (549)
+|.+++ .|+.+.+..+ ++..-..+|.++++|+.+.+..|. ++..-..+|..+.+| +.+.+..+ ++......|.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L-~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSEL-TDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTC-CBCGGGTT-CSEECTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccc-eeeccCCc-cceehhhhhh
Confidence 677774 5888888754 664556688888999998887764 553334567777777 77766544 4445556777
Q ss_pred CCCCCCEEEeecceeeeeCCccccCCCCCCEEecccC
Q 039925 128 NPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRN 164 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 164 (549)
.+.+|+.+.+..+. .......|..+.+|+.+.+..+
T Consensus 135 ~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 135 HCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT
T ss_pred hhccccccccccee-eeecccceecccccccccccce
Confidence 78888888876543 3245556677777777776544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-07 Score=95.12 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=50.8
Q ss_pred ccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCC
Q 039925 223 TTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQN 302 (549)
Q Consensus 223 ~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 302 (549)
.+|+.+.+..+ +......+|.++ .+|+.++|..+ ++ .++ ..+|.++.+|+.+++..+ ++..-..+|.++++
T Consensus 297 ~~L~~i~l~~~-i~~I~~~aF~~c--~~L~~i~lp~~-v~-~I~---~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGEEAFESC--TSLVSIDLPYL-VE-EIG---KRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTC--TTCCEECCCTT-CC-EEC---TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccc-cceechhhhcCC--CCCCEEEeCCc-cc-EEh---HHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 35555655443 443444567777 77888877644 43 232 356777888888888766 55445567778888
Q ss_pred CCEEEccCC
Q 039925 303 LMELSVSRN 311 (549)
Q Consensus 303 L~~L~Ls~N 311 (549)
|+.+++..+
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 888877644
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.71 E-value=6.3e-10 Score=105.34 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=67.4
Q ss_pred ccCCCCCCE--eeccccccc---ccCCcccccccCccceeeeccccccc--ccccccCCCCCCCEEEeecceeeeeCCcc
Q 039925 77 VGRLFRLEY--LLLANNHFS---GKIPANLSHCSNLLTKLFICETHLSG--QLLDFIGNPSAIQVMIFKENSLEGKFPNT 149 (549)
Q Consensus 77 ~~~l~~L~~--L~Ls~n~l~---~~~p~~l~~l~~L~~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 149 (549)
|...+.|+. ++++.|... ..++....++++| +.|+|++|+|++ .+|..+..+++|+.|+|++|.|++. ..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L-~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~ 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPEL-LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RE 213 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTC-CEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCC-CEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hh
Confidence 344444554 666666433 1122222457778 888888888876 3456667788888888888888743 33
Q ss_pred ccCCC--CCCEEecccCcceecccc-------cccccc-cceee
Q 039925 150 LSNLR--SLFYDNINRNEFSGLIPS-------FIFNIS-LKWNF 183 (549)
Q Consensus 150 ~~~l~--~L~~L~L~~n~l~~~~p~-------~~~~l~-L~~L~ 183 (549)
+..+. +|++|+|++|.+.+.+|. .+..++ |+.||
T Consensus 214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 44444 888888888888765552 345566 77775
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.68 E-value=7.9e-07 Score=90.08 Aligned_cols=248 Identities=9% Similarity=0.017 Sum_probs=153.3
Q ss_pred ccccCCCCCCEEEccCCc---ceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccC
Q 039925 51 PHVGNFGYLRFINLVDNN---FRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIG 127 (549)
Q Consensus 51 ~~~~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~ 127 (549)
.+|.++++|+.+.+..|. ++..-..+|..+.+|+.+.+..+ ++..-...|..+.+| +.+.+..+ +.......|.
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L-~~i~lp~~-~~~I~~~~F~ 157 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEEL-DTVTIPEG-VTSVADGMFS 157 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTC-CEEECCTT-CCEECTTTTT
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccc-ccccccce-eeeeccccee
Confidence 478999999999998764 55344568888999999888765 443444567888888 88888644 3435556777
Q ss_pred CCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCC--------------------
Q 039925 128 NPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPE-------------------- 186 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~-------------------- 186 (549)
.+.+|+.+.+..+ ++..-...|. ..+|+.+.+..+-.. .....|.+.. +.......
T Consensus 158 ~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (394)
T 4gt6_A 158 YCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYA 234 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEE
T ss_pred cccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccccccceeeccccccccc
Confidence 8888888888654 3323333343 345666665433211 1112222222 22111110
Q ss_pred ----------------CcCcccCchhhhhcCCCCcEeeecccccccc--cccCcccccEEEccccccccccChhhhhccc
Q 039925 187 ----------------NSFTGNLPLEIGVTLPKGRNYYILLLAQKLY--WSDVSTTATIIAMGGNQISGTITLGIKKLIF 248 (549)
Q Consensus 187 ----------------n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~--~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 248 (549)
+.+. .+....+..+.+|+.+.+......+. .+.....|+.+.+. +.+.......|.++
T Consensus 235 ~~~~~~~~~~~~~~ip~~v~-~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c-- 310 (394)
T 4gt6_A 235 LIRYPSQREDPAFKIPNGVA-RIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGC-- 310 (394)
T ss_dssp EEECCTTCCCSEEECCTTEE-EECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTC--
T ss_pred ccccccccccceEEcCCcce-EcccceeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCC--
Confidence 1111 12222333677788887766433322 12233578888875 44554555678888
Q ss_pred cCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCccc
Q 039925 249 VNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 314 (549)
.+|+.+.|..+ ++ .+. ...|.++.+|+.+.|..+ ++..-..+|.++++|+.+++.+|...
T Consensus 311 ~~L~~i~lp~~-v~-~I~---~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 311 ISLKSIDIPEG-IT-QIL---DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp TTCCEEECCTT-CC-EEC---TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred CCcCEEEeCCc-cc-Eeh---HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 89999999765 43 232 467888999999999654 55344568899999999999887643
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=4.8e-09 Score=94.39 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=59.9
Q ss_pred ccccCCCCCCEEEccCC-cceec----CCccccCCCCCCEeeccccccccc----CCcccccccCccceeeecccccccc
Q 039925 51 PHVGNFGYLRFINLVDN-NFRGE----IPEKVGRLFRLEYLLLANNHFSGK----IPANLSHCSNLLTKLFICETHLSGQ 121 (549)
Q Consensus 51 ~~~~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~~L~Ls~n~l~~~ 121 (549)
..+...++|++|+|++| .|... +...+...++|++|+|++|.|... +...+...+.| ++|+|++|.|...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L-~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL-KSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSC-CEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCc-CEEECcCCcCCHH
Confidence 34556677777777777 66532 344455566777777777776531 22333444555 6666666665532
Q ss_pred ----cccccCCCCCCCEEEe--ecceeeee----CCccccCCCCCCEEecccCcc
Q 039925 122 ----LLDFIGNPSAIQVMIF--KENSLEGK----FPNTLSNLRSLFYDNINRNEF 166 (549)
Q Consensus 122 ----~~~~~~~l~~L~~L~L--~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l 166 (549)
+...+...++|++|+| ++|.+... +...+...++|++|+|++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2333444445555555 44554421 122233334444444444443
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.8e-08 Score=100.50 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=34.0
Q ss_pred EEEEEeecCCCCcccccccCCC-CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNN-KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~-~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+++|++ .+|+|.+++..... ......++|..++.++.|+++||+|||
T Consensus 180 ~~~~~~~-~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 228 (413)
T 3dzo_A 180 RFFLYPR-MQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH 228 (413)
T ss_dssp EEEEEEC-CSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeh-hcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3455554 56899988841100 001346889999999999999999999
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=3.1e-08 Score=89.08 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=49.7
Q ss_pred cccEEEccccccccc----cChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeec--cCcccccc----C
Q 039925 224 TATIIAMGGNQISGT----ITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLAL--DNNKLQGN----L 293 (549)
Q Consensus 224 ~L~~L~l~~n~l~~~----~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~L--s~N~l~~~----~ 293 (549)
+|++|+|++|.+... +...+... ++|++|+|++|.+.+.....+...+...++|++|+| ++|.+... +
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n--~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVN--NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHC--SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhC--CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 444455555544432 12233334 566666666666654322223445556667777777 66777643 3
Q ss_pred CccccCCCCCCEEEccCCccc
Q 039925 294 PSSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 294 p~~l~~l~~L~~L~Ls~N~l~ 314 (549)
...+...+.|+.|+|++|.+.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCcCEEeccCCCCC
Confidence 344555677777777777765
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.6e-05 Score=77.31 Aligned_cols=245 Identities=9% Similarity=-0.032 Sum_probs=111.8
Q ss_pred ecCc-cccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeeccccccccccccc
Q 039925 48 CLTP-HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFI 126 (549)
Q Consensus 48 ~lp~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~ 126 (549)
.|++ +|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ ++ .+.+..+...+| +.+.+..+ ++......|
T Consensus 59 ~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~~L-~~i~lp~~-~~~i~~~~F 132 (379)
T 4h09_A 59 SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGTDL-DDFEFPGA-TTEIGNYIF 132 (379)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTCCC-SEEECCTT-CCEECTTTT
T ss_pred ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccCCc-ccccCCCc-ccccccccc
Confidence 4433 6778888888888644 553344466665 5666666543 44 333333333466 77777654 222333344
Q ss_pred CCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecc------------cccccccc-cceeeCCCCcCcccC
Q 039925 127 GNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLI------------PSFIFNIS-LKWNFLPENSFTGNL 193 (549)
Q Consensus 127 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~------------p~~~~~l~-L~~L~l~~n~l~~~~ 193 (549)
.+. +|+.+.+..+ ++..-...|..+.+++.+.+..+...... ...+.... +..+.+..... .+
T Consensus 133 ~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i 208 (379)
T 4h09_A 133 YNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK--TV 208 (379)
T ss_dssp TTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC--EE
T ss_pred ccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee--EE
Confidence 443 4555554433 33244455666677776666543221100 01111111 22222222111 11
Q ss_pred chhhhhcCCCCcEeeecccccccc--cccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCcc
Q 039925 194 PLEIGVTLPKGRNYYILLLAQKLY--WSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIAS 271 (549)
Q Consensus 194 p~~~~~~l~~L~~L~l~~~~~~l~--~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~ 271 (549)
....+....+|+.+.+...+..+. .+.....|+.+.+..+ ++......|..+ .+|+.+.+..+ ++ .++ ..
T Consensus 209 ~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~--~~l~~i~l~~~-i~-~i~---~~ 280 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC--TALKTLNFYAK-VK-TVP---YL 280 (379)
T ss_dssp CTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC--TTCCEEEECCC-CS-EEC---TT
T ss_pred eecccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCcccccee--ehhcccccccc-ce-ecc---cc
Confidence 111111344455554443222221 1112234555555433 332333444445 55555555433 22 121 23
Q ss_pred ccCCccccCeeeccCccccccCCccccCCCCCCEEEccC
Q 039925 272 SLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSR 310 (549)
Q Consensus 272 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 310 (549)
.|.++++|+.+.+.++.++..-..+|.++.+|+.++|..
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 455556666666655555533444555666666665543
|
| >2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A | Back alignment and structure |
|---|
Probab=98.36 E-value=3.9e-07 Score=90.16 Aligned_cols=45 Identities=9% Similarity=-0.041 Sum_probs=39.4
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++||||+++|++.+.+.. ..+++.....++.|+++||+|||
T Consensus 134 ~~~~~lv~E~~~~g~ll~~~~~-------~~~~~~~~~~i~~qi~~aL~~lH 178 (336)
T 2vuw_A 134 DDQLFIVLEFEFGGIDLEQMRT-------KLSSLATAKSILHQLTASLAVAE 178 (336)
T ss_dssp TTCEEEEEEEECCCEETGGGTT-------TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEEEecCCCccHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999988777754 24789999999999999999999
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.28 E-value=3.1e-07 Score=86.81 Aligned_cols=107 Identities=20% Similarity=0.157 Sum_probs=78.1
Q ss_pred ccCCCCCCE--EEccCCcce---ecCCccccCCCCCCEeecccccccc--cCCcccccccCccceeeecccccccc-ccc
Q 039925 53 VGNFGYLRF--INLVDNNFR---GEIPEKVGRLFRLEYLLLANNHFSG--KIPANLSHCSNLLTKLFICETHLSGQ-LLD 124 (549)
Q Consensus 53 ~~~l~~L~~--L~L~~n~l~---~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~~L~Ls~n~l~~~-~~~ 124 (549)
|...+.|.. ++++.|... ..++-...++++|+.|+|++|+|++ .+|..+..+++| +.|+|++|+|++. ...
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L-~~L~Ls~N~i~~~~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNL-KILNLSGNELKSERELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTC-CEEECTTSCCCSGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCC-CEEECCCCccCCchhhh
Confidence 344445555 677777543 2222223568999999999999996 455777899999 9999999999865 112
Q ss_pred ccCCCCCCCEEEeecceeeeeCCc-------cccCCCCCCEEec
Q 039925 125 FIGNPSAIQVMIFKENSLEGKFPN-------TLSNLRSLFYDNI 161 (549)
Q Consensus 125 ~~~~l~~L~~L~L~~n~l~~~~p~-------~~~~l~~L~~L~L 161 (549)
.+..+ +|++|+|++|.+.+.+|. .+..+++|+.||=
T Consensus 216 ~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 216 KIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 33344 999999999999876663 4678999999873
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.4e-06 Score=91.79 Aligned_cols=67 Identities=13% Similarity=0.235 Sum_probs=47.3
Q ss_pred CCCccccCceecEEEEEeCCCce------------------------------------------eEEEeccccCCCceE
Q 039925 399 SSNMIGQGSFGSVYKGILGEKWT------------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 399 ~~~~lG~G~~g~Vy~~~~~~~~~------------------------------------------~g~~~~~~~~~~~~~ 436 (549)
..+.||+|+||.||+|.+.+..+ ..++.. .+..
T Consensus 340 ~~~~LG~G~fg~Vy~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~-----~~~~ 414 (540)
T 3en9_A 340 PEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVD-----LDNK 414 (540)
T ss_dssp --------CCEEEEEEECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEE-----TTTT
T ss_pred CCCEEeeCCCEEEEEEEECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEe-----CCcc
Confidence 45689999999999997655433 233333 4567
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.++++. +..++.|+++||+|||
T Consensus 415 ~lVmE~~~ggsL~~~l~~--------------~~~i~~qi~~aL~~LH 448 (540)
T 3en9_A 415 RIMMSYINGKLAKDVIED--------------NLDIAYKIGEIVGKLH 448 (540)
T ss_dssp EEEEECCCSEEHHHHSTT--------------CTHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 999999999999999873 4589999999999999
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.05 E-value=1.5e-06 Score=76.30 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=17.4
Q ss_pred CCCEEEccCCcceecCCccccCCCCCCEeecccc
Q 039925 58 YLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANN 91 (549)
Q Consensus 58 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 91 (549)
+|+.||++++.|+..--..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555554332333445555555555555
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1.9e-06 Score=75.54 Aligned_cols=92 Identities=12% Similarity=0.146 Sum_probs=52.3
Q ss_pred CCccccCCCCCCEeecccccccccCCcccccccCccceeeecccc-cccccccccCCC----CCCCEEEeecce-eeeeC
Q 039925 73 IPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETH-LSGQLLDFIGNP----SAIQVMIFKENS-LEGKF 146 (549)
Q Consensus 73 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~ 146 (549)
+|.....-.+|+.||+++|.|+..--..+..+++| ++|+|++|. +++.--..+..+ ++|++|+|++|. ++..-
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L-~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYV-EKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCC-CEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCC-CEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 34433233467788888777765444455667777 777777774 554333334443 356667766663 55332
Q ss_pred CccccCCCCCCEEecccCc
Q 039925 147 PNTLSNLRSLFYDNINRNE 165 (549)
Q Consensus 147 p~~~~~l~~L~~L~L~~n~ 165 (549)
-..+.++++|++|+|+++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 2344556666666666653
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00082 Score=67.23 Aligned_cols=261 Identities=8% Similarity=-0.049 Sum_probs=150.7
Q ss_pred cccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCC
Q 039925 52 HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSA 131 (549)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~ 131 (549)
+|.++ +|+.+.+..+ ++..-...|.. .+|+.+.+..+-.. .-...|..+ ++ +.+.+..+ ++......|..+.+
T Consensus 87 aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~~~~-i~~~~F~~~-~l-~~~~~~~~-v~~i~~~~f~~~~~ 159 (379)
T 4h09_A 87 AFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGATTE-IGNYIFYNS-SV-KRIVIPKS-VTTIKDGIGYKAEN 159 (379)
T ss_dssp TTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTTCCE-ECTTTTTTC-CC-CEEEECTT-CCEECSCTTTTCTT
T ss_pred hhcCC-CCceEECCce-eeEeccceecc-CCcccccCCCcccc-ccccccccc-ee-eeeeccce-eeccccchhccccc
Confidence 56666 6778877654 55233345554 47999999765322 223334433 55 55555433 44445566777888
Q ss_pred CCEEEeecceeee------------eCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhh
Q 039925 132 IQVMIFKENSLEG------------KFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIG 198 (549)
Q Consensus 132 L~~L~L~~n~l~~------------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~ 198 (549)
++.+.+..+.... .....+.....+..+.+..+.. ......+.... |+.+.+..+ +. .+....+
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f 236 (379)
T 4h09_A 160 LEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VT-TLGDGAF 236 (379)
T ss_dssp CCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CC-EECTTTT
T ss_pred ccccccccccceeecccceecccccceecccccccccccccccccee-EEeecccccccccceeeeccc-ee-EEccccc
Confidence 8888776543321 1112234445555555443322 13334444555 666666543 22 2333333
Q ss_pred hcCCCCcEeeecccccccc--cccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCc
Q 039925 199 VTLPKGRNYYILLLAQKLY--WSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNL 276 (549)
Q Consensus 199 ~~l~~L~~L~l~~~~~~l~--~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l 276 (549)
....+|+.+.+...+..+. .+....+|+.+.+..+ +.......|..+ .+|+.+.+.++.++ .++ ...|.++
T Consensus 237 ~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c--~~L~~i~l~~~~i~-~I~---~~aF~~c 309 (379)
T 4h09_A 237 YGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC--SNLTKVVMDNSAIE-TLE---PRVFMDC 309 (379)
T ss_dssp TTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC--TTCCEEEECCTTCC-EEC---TTTTTTC
T ss_pred cCCccceEEEcCCCccEeCccccceeehhcccccccc-ceeccccccccc--cccccccccccccc-eeh---hhhhcCC
Confidence 3666777777665443332 1223346777777543 444445677888 89999999888776 343 4678889
Q ss_pred cccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCCCCCCCCCcccCC
Q 039925 277 TLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPLNSQHNHSFSCPG 332 (549)
Q Consensus 277 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ls~N~~~~ip~ 332 (549)
.+|+.+.|..+ ++..-..+|.++.+|+.+.+..+ ++ .|...-+.++.+..+|.
T Consensus 310 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~-~I~~~aF~~c~~~~~~~ 362 (379)
T 4h09_A 310 VKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT-LIESGAFEGSSITKYPT 362 (379)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTSSCCCCCT
T ss_pred CCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC-EEchhHhhCCCCCcCcc
Confidence 99999999755 55445668889999999888654 44 24443344454445543
|
| >1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=1.7e-05 Score=76.10 Aligned_cols=78 Identities=8% Similarity=0.004 Sum_probs=53.1
Q ss_pred cccCcCCCccccCceecEEEEEeCCCceeEE-------Eec----------------------------------ccc--
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWTAGY-------SEG----------------------------------TDF-- 430 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~g~-------~~~----------------------------------~~~-- 430 (549)
..-|...+.||+|+||.||+|.+.++..+.. ... ...
T Consensus 89 ~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~~~v~~ 168 (282)
T 1zar_A 89 GKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPK 168 (282)
T ss_dssp TSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCC
T ss_pred CeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccCCCcCe
Confidence 3345566899999999999999954543110 000 000
Q ss_pred -CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 -KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 -~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...+..++||||+++|+|.+ +... ....++.|+++||+|||
T Consensus 169 ~~~~~~~~lvmE~~~g~~L~~-l~~~------------~~~~i~~qi~~~l~~lH 210 (282)
T 1zar_A 169 VYAWEGNAVLMELIDAKELYR-VRVE------------NPDEVLDMILEEVAKFY 210 (282)
T ss_dssp EEEEETTEEEEECCCCEEGGG-CCCS------------CHHHHHHHHHHHHHHHH
T ss_pred EEeccceEEEEEecCCCcHHH-cchh------------hHHHHHHHHHHHHHHHH
Confidence 01234589999999999999 4321 23469999999999999
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=7.3e-05 Score=79.19 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=40.9
Q ss_pred eEEEeccccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 422 AGYSEGTDFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 422 ~g~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++++.+ ....||||||++||+|.++|...+ +++.. +|+.||++||+|+|
T Consensus 308 ~~~~ed-----~~~~yLVMEyv~G~~L~d~i~~~~------~l~~~---~I~~QIl~AL~ylH 356 (569)
T 4azs_A 308 LAHGEN-----AQSGWLVMEKLPGRLLSDMLAAGE------EIDRE---KILGSLLRSLAALE 356 (569)
T ss_dssp EEEEEC-----SSEEEEEEECCCSEEHHHHHHTTC------CCCHH---HHHHHHHHHHHHHH
T ss_pred EEEEEE-----CCEEEEEEecCCCCcHHHHHHhCC------CCCHH---HHHHHHHHHHHHHH
Confidence 466666 788999999999999999998654 45543 58999999999999
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=4.2e-05 Score=68.34 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=66.9
Q ss_pred cccccEEEcccccccccc----ChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCc---cccc---
Q 039925 222 STTATIIAMGGNQISGTI----TLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNN---KLQG--- 291 (549)
Q Consensus 222 ~~~L~~L~l~~n~l~~~~----~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N---~l~~--- 291 (549)
...|+.|+|++|.+.+.. ...+..- +.|+.|+|++|.|.+.....+...+..-+.|++|+|++| .+..
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N--~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETS--PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHC--SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcC--CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 347999999999998543 3444455 789999999999985543344556777788999999865 3442
Q ss_pred -cCCccccCCCCCCEEEccCCccc
Q 039925 292 -NLPSSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 292 -~~p~~l~~l~~L~~L~Ls~N~l~ 314 (549)
.+...+...+.|+.|+++.|.+.
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHhCCCcCeEeccCCCcc
Confidence 24456777899999999887654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=4.1e-05 Score=68.41 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=30.0
Q ss_pred cCCCCCCEEEccCC-ccee----cCCccccCCCCCCEeeccccccccc----CCcccccccCccceeeecccccc
Q 039925 54 GNFGYLRFINLVDN-NFRG----EIPEKVGRLFRLEYLLLANNHFSGK----IPANLSHCSNLLTKLFICETHLS 119 (549)
Q Consensus 54 ~~l~~L~~L~L~~n-~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~~L~Ls~n~l~ 119 (549)
.+-+.|+.|+|++| .|.. .+-+.+..-+.|+.|+|++|.|... +...+..-+.| ++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL-~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSL-RVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSC-CEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCcc-CeEecCCCcCC
Confidence 33455666666653 4432 1333444445555666655555421 12223333444 44555555444
|
| >4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00017 Score=71.77 Aligned_cols=76 Identities=13% Similarity=0.075 Sum_probs=51.5
Q ss_pred CcCCCccccCceecEEEEEeCCCceeEEE-------e--------------------------------------ccccC
Q 039925 397 FSSSNMIGQGSFGSVYKGILGEKWTAGYS-------E--------------------------------------GTDFK 431 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~~~~~~g~~-------~--------------------------------------~~~~~ 431 (549)
|.....||+|+||.||+|...+|..++.- . ....+
T Consensus 97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~ 176 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP 176 (397)
T ss_dssp SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 67788999999999999998776541100 0 00001
Q ss_pred CCc-----eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GID-----FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~-----~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+. ..+|||||+++++|..+.... ....++.|++.||.|||
T Consensus 177 vp~p~~~~~~~LVME~i~G~~L~~l~~~~------------~~~~l~~qll~~l~~lH 222 (397)
T 4gyi_A 177 VPEPIAQSRHTIVMSLVDALPMRQVSSVP------------DPASLYADLIALILRLA 222 (397)
T ss_dssp CCCEEEEETTEEEEECCSCEEGGGCCCCS------------CHHHHHHHHHHHHHHHH
T ss_pred CCeeeeccCceEEEEecCCccHhhhcccH------------HHHHHHHHHHHHHHHHH
Confidence 111 125999999999987764321 23467899999999999
|
| >1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00039 Score=65.61 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=29.3
Q ss_pred EEEEEeecCC-CCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQN-RSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~-GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++||||+.+ |.+...+.... ...++.....++.|+++||.|||
T Consensus 143 ~~lVmE~~g~~g~~~~~L~~~~-----~~~~~~~~~~i~~qi~~~l~~lH 187 (258)
T 1zth_A 143 NVLLMEFIGEDELPAPTLVELG-----RELKELDVEGIFNDVVENVKRLY 187 (258)
T ss_dssp TEEEEECCEETTEECCBHHHHG-----GGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCCCccccHHHHh-----hccChHHHHHHHHHHHHHHHHHH
Confidence 3699999953 53333333211 01235567889999999999999
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0029 Score=52.56 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=35.9
Q ss_pred EEEcCCCccc-ccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCccc
Q 039925 253 ALTMVKNKLS-GPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 253 ~L~L~~n~l~-~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 314 (549)
.++.+++.++ ..+|..+| ++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp------~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP------VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC------TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC------cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4566666664 24433222 35777788888877544556777788888888777765
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0061 Score=50.55 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=13.6
Q ss_pred CCEEEeecceeeeeCCccccCCCCCCEEecccCc
Q 039925 132 IQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNE 165 (549)
Q Consensus 132 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 165 (549)
|++|+|++|+|+..-+..|..+++|++|+|++|.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3344444444432222333344444444444443
|
| >3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=0.24 Score=46.04 Aligned_cols=73 Identities=8% Similarity=-0.052 Sum_probs=50.3
Q ss_pred cCcCCCccccCceecEEEEEeCCCce-----------------------------------eEEEeccccCCCceEEEEE
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+|.....+|.|+.+.||+....++.+ ++++.. .+..++||
T Consensus 15 ~~~~~~~~~g~s~~~v~~~~~~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~-----~~~~~lv~ 89 (263)
T 3tm0_A 15 KYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERH-----DGWSNLLM 89 (263)
T ss_dssp TSEEEECCSCCSSSEEEEEECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE-----TTEEEEEE
T ss_pred cceeEeeccCCCCCeEEEEECCCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEec-----CCceEEEE
Confidence 45555567777788888876443322 333333 45678999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||++|.++.+.+.. ......++.++++++..||
T Consensus 90 e~i~G~~l~~~~~~-----------~~~~~~~~~~l~~~l~~LH 122 (263)
T 3tm0_A 90 SEADGVLCSEEYED-----------EQSPEKIIELYAECIRLFH 122 (263)
T ss_dssp ECCSSEEHHHHCCT-----------TTCHHHHHHHHHHHHHHHH
T ss_pred EecCCeehhhccCC-----------cccHHHHHHHHHHHHHHHh
Confidence 99999998776321 1223478899999999999
|
| >3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134} | Back alignment and structure |
|---|
Probab=88.67 E-value=0.86 Score=44.55 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=33.7
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++..+.+... ..++...+..++.++++.|+.||
T Consensus 115 ~~~~vme~v~G~~l~~~~~--------~~l~~~~~~~~~~~l~~~La~LH 156 (359)
T 3dxp_A 115 RAFYIMEFVSGRVLWDQSL--------PGMSPAERTAIYDEMNRVIAAMH 156 (359)
T ss_dssp SCEEEEECCCCBCCCCTTC--------TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEecCCeecCCCcc--------ccCCHHHHHHHHHHHHHHHHHHh
Confidence 4689999999988865221 23677788899999999999999
|
| >1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6 | Back alignment and structure |
|---|
Probab=85.70 E-value=1.5 Score=40.09 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=28.3
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+++.++. ... . ....++.++++.+..||
T Consensus 87 ~~~~~~v~e~i~G~~l~--~~~---------~---~~~~~~~~l~~~l~~lh 124 (264)
T 1nd4_A 87 AGRDWLLLGEVPGQDLL--SSH---------L---APAEKVSIMADAMRRLH 124 (264)
T ss_dssp SSCEEEEEECCSSEETT--TSC---------C---CHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEecCCcccC--cCc---------C---CHhHHHHHHHHHHHHHh
Confidence 34578999999998884 221 1 12367899999999999
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 549 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-20 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-04 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 9e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 0.001 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-06 | |
| d1uwha_ | 276 | d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) | 0.001 | |
| d1mqba_ | 283 | d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum | 0.003 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 89.0 bits (219), Expect = 4e-20
Identities = 69/324 (21%), Positives = 105/324 (32%), Gaps = 26/324 (8%)
Query: 1 ETDHLALLAIKSLLHDRRGVTSSWSNSIDLCQ--WRGVTCTHQHQRINKCLTPHVGNFGY 58
D ALL IK L + SSW + D C W GV C
Sbjct: 5 PQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTD------------TQTYR 51
Query: 59 LRFINLVDNNFRG--EIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICET 116
+ ++L N IP + L L +L + + L L+I T
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 117 HLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFN 176
++SG + DF+ + + F N+L G P ++S+L +L + N SG IP +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 177 I--SLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQ 234
+ N TG +P + +L S T
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 235 ISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLP 294
+ +N L N++ G +P L L L L + N L G +P
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRN--NRIYGTLP----QGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 295 SSLGYYQNLMELSVSRNKLSASLP 318
G Q + + NK P
Sbjct: 286 -QGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 14/68 (20%), Positives = 23/68 (33%)
Query: 128 NPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNFLPEN 187
+ + + N + G P L+ L+ L N++ N G IP + N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Query: 188 SFTGNLPL 195
PL
Sbjct: 302 KCLCGSPL 309
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 56.2 bits (134), Expect = 4e-09
Identities = 50/288 (17%), Positives = 85/288 (29%), Gaps = 44/288 (15%)
Query: 24 WSNSIDLCQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRL 83
SN+I + Q +T L ++ + + +L L
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199
Query: 84 EYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLE 143
E L+ NN S P + L +L + L
Sbjct: 200 ESLIATNNQISDITPLGILTN---LDELSLNGNQLKD----------------------- 233
Query: 144 GKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPK 203
TL++L +L ++ N+ S L P L L N + PL
Sbjct: 234 ---IGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAG--LTAL 287
Query: 204 GRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSG 263
+ + T + + N IS + L L NK+S
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS----LTKLQRLFFANNKVSD 343
Query: 264 PIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRN 311
SSL NLT + +L+ +N++ P L + +L ++
Sbjct: 344 V------SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 51.5 bits (122), Expect = 1e-07
Identities = 45/219 (20%), Positives = 73/219 (33%), Gaps = 20/219 (9%)
Query: 103 HCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTL-SNLRSLFYDNI 161
+NL T + + + + + ++ +I N + P + +NL L ++
Sbjct: 170 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL---SL 226
Query: 162 NRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDV 221
N N+ I + +L L N + PL L L L +
Sbjct: 227 NGNQLKD-IGTLASLTNLTDLDLANNQISNLAPLSGLTKL------TELKLGANQISNIS 279
Query: 222 STTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTY 281
+ NL LT+ N +S P + +LT L
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP------VSSLTKLQR 333
Query: 282 LALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPL 320
L NNK+ SSL N+ LS N++S L PL
Sbjct: 334 LFFANNKVSD--VSSLANLTNINWLSAGHNQIS-DLTPL 369
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 39.2 bits (90), Expect = 9e-04
Identities = 53/331 (16%), Positives = 95/331 (28%), Gaps = 25/331 (7%)
Query: 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHL 118
+ + + + V L L + +NN + P L + + L+ L
Sbjct: 46 VTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 101
Query: 119 SGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS 178
L + N + + + + ++ + S I
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKN---------LTNLNRLELSSNTISDISALSG 152
Query: 179 LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGT 238
L + R + T + NQIS
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 212
Query: 239 ITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLG 298
I NL L++ N+L +L +LT LT L L NN++ P L
Sbjct: 213 ----TPLGILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANNQISNLAP--LS 260
Query: 299 YYQNLMELSVSRNKLSASLPPLNSQHNHSFSCPGFEFSVIKLEFQIPGNKKLCGGLDELH 358
L EL + N++S P + + I + L + +
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320
Query: 359 LLSCHSKESKRQTIKLLTMAISMILSLFILS 389
+S S +K Q + +S + SL L+
Sbjct: 321 DISPVSSLTKLQRLFFANNKVSDVSSLANLT 351
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.7 bits (125), Expect = 4e-08
Identities = 41/291 (14%), Positives = 88/291 (30%), Gaps = 22/291 (7%)
Query: 31 CQWRGVTCTHQH-QRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLA 89
C R V C+ +++ K L P ++L +N L L L+L
Sbjct: 10 CHLRVVQCSDLGLEKVPKDLPPD------TALLDLQNNKITEIKDGDFKNLKNLHTLILI 63
Query: 90 NNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNT 149
NN S P + L +L++ + L ++V + + N
Sbjct: 64 NNKISKISPGAFAPLVK-LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG 122
Query: 150 LSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYI 209
L+ + + +F L + + + + T +P + +L +
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSL-----TEL 176
Query: 210 LLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHI 269
L K+ D ++ + + +S + N L + + +
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL--NNNKLVKV 234
Query: 270 ASSLGNLTLLTYLALDNNKLQG------NLPSSLGYYQNLMELSVSRNKLS 314
L + + + L NN + P + +S+ N +
Sbjct: 235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.5 bits (88), Expect = 0.001
Identities = 24/134 (17%), Positives = 40/134 (29%), Gaps = 4/134 (2%)
Query: 247 IFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMEL 306
+ + L + NK++ NL L L L NNK+ P + L L
Sbjct: 29 LPPDTALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 84
Query: 307 SVSRNKLSASLPPLNSQHNHSFSCPGFEFSVIKLEFQIPGNKKLCGGLDELHLLSCHSKE 366
+S+N+L + V K F + S
Sbjct: 85 YLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144
Query: 367 SKRQTIKLLTMAIS 380
+ + KL + I+
Sbjct: 145 AFQGMKKLSYIRIA 158
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 40/249 (16%), Positives = 78/249 (31%), Gaps = 8/249 (3%)
Query: 72 EIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSA 131
+P + + + L N S A+ C NL F G
Sbjct: 25 AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 132 IQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPS-FIFNISLKWNFLPENSFT 190
Q+ + L P T L L +++R L P F +L++ +L +N+
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 191 GNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVN 250
G ++ L ++ + ++ + + F +
Sbjct: 143 ALPD---DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 251 LYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSR 310
L M + + +L L L YL L++N + + + L + S
Sbjct: 200 LGR-LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSS 257
Query: 311 NKLSASLPP 319
+++ SLP
Sbjct: 258 SEVPCSLPQ 266
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (90), Expect = 0.001
Identities = 23/121 (19%), Positives = 35/121 (28%), Gaps = 34/121 (28%)
Query: 395 NEFSSSNMIGQGSFGSVYKGILGE-------KWTAGYSEGT------------------- 428
+ + IG GSFG+VYKG TA +
Sbjct: 8 GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67
Query: 429 ---DFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLRV 485
+ A+V + + SL + K + L I A ++YL
Sbjct: 68 LFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDI-----ARQTAQGMDYLHA 122
Query: 486 K 486
K
Sbjct: 123 K 123
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 0.003
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 395 NEFSSSNMIGQGSFGSVYKGIL 416
+ + +IG G FG VYKG+L
Sbjct: 7 SCVTRQKVIGAGEFGEVYKGML 28
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 549 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.89 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.89 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.88 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.88 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.87 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.87 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.85 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 99.79 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.77 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.77 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.77 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 99.76 | |
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 99.76 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 99.75 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 99.75 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.74 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 99.74 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 99.74 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.73 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 99.73 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.73 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 99.73 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 99.72 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.72 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 99.71 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 99.71 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 99.7 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 99.7 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 99.7 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 99.68 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 99.68 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 99.67 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 99.66 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 99.65 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 99.65 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.62 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.62 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 99.6 | |
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 99.6 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.59 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 99.58 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 99.56 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.55 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 99.54 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 99.54 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.54 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.53 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 99.53 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 99.52 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 99.52 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 99.52 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.51 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.51 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 99.51 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 99.49 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.49 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 99.49 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 99.48 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.48 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 99.47 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 99.46 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 99.46 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 99.46 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.42 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 99.41 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.37 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.36 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 99.36 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 99.35 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 99.35 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.34 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.33 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 99.32 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 99.31 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 99.31 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 99.3 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 99.27 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 99.27 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 99.26 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.26 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.25 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 99.24 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 99.23 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 99.22 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 99.19 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 99.19 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 99.19 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 99.12 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 99.09 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 98.67 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.33 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.31 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.79 | |
| d1zara2 | 191 | Rio2 serine protein kinase C-terminal domain {Arch | 97.77 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.69 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.25 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.09 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=3.7e-41 Score=332.02 Aligned_cols=297 Identities=28% Similarity=0.438 Sum_probs=261.2
Q ss_pred ChhHHHHHHHHhhcCCCCCCCCCCCCCCCCC--CCCcceeCCCCCceEeecCccccCCCCCCEEEccCCccee--cCCcc
Q 039925 1 ETDHLALLAIKSLLHDRRGVTSSWSNSIDLC--QWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRG--EIPEK 76 (549)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c--~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~--~~p~~ 76 (549)
++|++||++||+++.+|. .+++|+.++||| .|.||.|+.... -.+++.|+|++|.+++ .+|++
T Consensus 5 ~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~------------~~~v~~L~L~~~~l~g~~~lp~~ 71 (313)
T d1ogqa_ 5 PQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQ------------TYRVNNLDLSGLNLPKPYPIPSS 71 (313)
T ss_dssp HHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSS------------CCCEEEEEEECCCCSSCEECCGG
T ss_pred HHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCC------------cEEEEEEECCCCCCCCCCCCChH
Confidence 369999999999998875 799999899999 499999975321 1246689999999987 58999
Q ss_pred ccCCCCCCEeeccc-ccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCC
Q 039925 77 VGRLFRLEYLLLAN-NHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRS 155 (549)
Q Consensus 77 ~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 155 (549)
++++++|++|+|++ |+++|.+|..|+++++| ++|+|++|++.+..+..+..+.+|+++++++|.+.+.+|..+.++++
T Consensus 72 l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L-~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~ 150 (313)
T d1ogqa_ 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQL-HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTC-SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred HhcCcccccccccccccccccccccccccccc-chhhhccccccccccccccchhhhcccccccccccccCchhhccCcc
Confidence 99999999999997 88999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCEEecccCcceecccccccccc--cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEcccc
Q 039925 156 LFYDNINRNEFSGLIPSFIFNIS--LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGN 233 (549)
Q Consensus 156 L~~L~L~~n~l~~~~p~~~~~l~--L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n 233 (549)
|+++++++|.+.+.+|..+..+. ++.+++++|++++..|..+. .+ ....++++.+
T Consensus 151 L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~-~l----------------------~~~~l~l~~~ 207 (313)
T d1ogqa_ 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NL----------------------NLAFVDLSRN 207 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GC----------------------CCSEEECCSS
T ss_pred cceeecccccccccccccccccccccccccccccccccccccccc-cc----------------------cccccccccc
Confidence 99999999999999999998887 69999999999988887765 22 3557889999
Q ss_pred ccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcc
Q 039925 234 QISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKL 313 (549)
Q Consensus 234 ~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 313 (549)
.+.+.+|..+..+ ++++.+++++|.+.+.+ ..+..+++|+.|+|++|+++|.+|..|+++++|++|+|++|+|
T Consensus 208 ~~~~~~~~~~~~~--~~l~~l~~~~~~l~~~~-----~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l 280 (313)
T d1ogqa_ 208 MLEGDASVLFGSD--KNTQKIHLAKNSLAFDL-----GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EEEECCGGGCCTT--SCCSEEECCSSEECCBG-----GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred ccccccccccccc--ccccccccccccccccc-----cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcc
Confidence 9999999998888 99999999999998654 3578899999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCcccCCcccccccceeeecCCCCCCCCc
Q 039925 314 SASLPPLNSQHNHSFSCPGFEFSVIKLEFQIPGNKKLCGGL 354 (549)
Q Consensus 314 ~~~~p~~~ls~N~~~~ip~~~~~~l~l~~~~~gn~~~c~~~ 354 (549)
+|.+|.. . -++.++. +.+.||+.+||.+
T Consensus 281 ~g~iP~~---~---------~L~~L~~-l~l~~N~~l~g~p 308 (313)
T d1ogqa_ 281 CGEIPQG---G---------NLQRFDV-SAYANNKCLCGSP 308 (313)
T ss_dssp EEECCCS---T---------TGGGSCG-GGTCSSSEEESTT
T ss_pred cccCCCc---c---------cCCCCCH-HHhCCCccccCCC
Confidence 9988852 0 1333433 6789999999974
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=1e-29 Score=249.59 Aligned_cols=239 Identities=27% Similarity=0.418 Sum_probs=214.8
Q ss_pred eecCccccCCCCCCEEEccC-CcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccc
Q 039925 47 KCLTPHVGNFGYLRFINLVD-NNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDF 125 (549)
Q Consensus 47 g~lp~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~ 125 (549)
+.+|+.++++++|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..|..+..+..| +++++++|.+...+|..
T Consensus 66 ~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L-~~l~l~~N~~~~~~p~~ 144 (313)
T d1ogqa_ 66 YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL-VTLDFSYNALSGTLPPS 144 (313)
T ss_dssp EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC-CEEECCSSEEESCCCGG
T ss_pred CCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhh-cccccccccccccCchh
Confidence 37999999999999999997 88999999999999999999999999998888889999999 99999999999999999
Q ss_pred cCCCCCCCEEEeecceeeeeCCccccCCCCC-CEEecccCcceecccccccccccceeeCCCCcCcccCchhhhhcCCCC
Q 039925 126 IGNPSAIQVMIFKENSLEGKFPNTLSNLRSL-FYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKG 204 (549)
Q Consensus 126 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~L~~n~l~~~~p~~~~~l~L~~L~l~~n~l~~~~p~~~~~~l~~L 204 (549)
+.++++|+++++++|.+.+.+|..+..+.++ +.++++.|++++..|..+..+....++++.+.+.+.+|..+. .+
T Consensus 145 l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~-~~--- 220 (313)
T d1ogqa_ 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG-SD--- 220 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCC-TT---
T ss_pred hccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc---
Confidence 9999999999999999999999999998886 899999999999999999988866899999999988887654 22
Q ss_pred cEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeec
Q 039925 205 RNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLAL 284 (549)
Q Consensus 205 ~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~L 284 (549)
++++.+++++|.+.+.++ .+..+ ++|+.|+|++|+++|.+ |.+++++++|++|+|
T Consensus 221 ------------------~~l~~l~~~~~~l~~~~~-~~~~~--~~L~~L~Ls~N~l~g~i----P~~l~~L~~L~~L~L 275 (313)
T d1ogqa_ 221 ------------------KNTQKIHLAKNSLAFDLG-KVGLS--KNLNGLDLRNNRIYGTL----PQGLTQLKFLHSLNV 275 (313)
T ss_dssp ------------------SCCSEEECCSSEECCBGG-GCCCC--TTCCEEECCSSCCEECC----CGGGGGCTTCCEEEC
T ss_pred ------------------cccccccccccccccccc-ccccc--cccccccCccCeecccC----ChHHhCCCCCCEEEC
Confidence 368888889999887655 57777 89999999999999877 678899999999999
Q ss_pred cCccccccCCccccCCCCCCEEEccCCc-cccc
Q 039925 285 DNNKLQGNLPSSLGYYQNLMELSVSRNK-LSAS 316 (549)
Q Consensus 285 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ 316 (549)
++|+++|.+|. ++++++|+.+++++|+ +.|.
T Consensus 276 s~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~ 307 (313)
T d1ogqa_ 276 SFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred cCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence 99999998885 6788999999999998 5553
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=3.6e-25 Score=215.99 Aligned_cols=276 Identities=20% Similarity=0.267 Sum_probs=214.3
Q ss_pred CCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccce
Q 039925 31 CQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110 (549)
Q Consensus 31 c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~ 110 (549)
|.|++|+|+. .+++ ++|..+. +++++|+|++|+|+...+..|.++++|++|++++|.+....|..|..+++| ++
T Consensus 10 c~~~~~~C~~--~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L-~~ 83 (305)
T d1xkua_ 10 CHLRVVQCSD--LGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL-ER 83 (305)
T ss_dssp EETTEEECTT--SCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC-CE
T ss_pred ecCCEEEecC--CCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCcc-CE
Confidence 6899999975 3344 7787764 689999999999994444579999999999999999997668889999999 99
Q ss_pred eeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcce--ecccccccccc-cceeeCCCC
Q 039925 111 LFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFS--GLIPSFIFNIS-LKWNFLPEN 187 (549)
Q Consensus 111 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l~-L~~L~l~~n 187 (549)
|++++|+++. +|..+ ...++.|++..|.+....+..+.....++.++...|... ...+..+..++ |+.+++++|
T Consensus 84 L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n 160 (305)
T d1xkua_ 84 LYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 160 (305)
T ss_dssp EECCSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred ecccCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC
Confidence 9999999985 44433 468899999999998666666778888899998887544 33456677888 999999999
Q ss_pred cCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCC
Q 039925 188 SFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPH 267 (549)
Q Consensus 188 ~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~ 267 (549)
.++ .+|..+ .++|+.|++++|......+..+..+ +.++.|++++|.+++..
T Consensus 161 ~l~-~l~~~~------------------------~~~L~~L~l~~n~~~~~~~~~~~~~--~~l~~L~~s~n~l~~~~-- 211 (305)
T d1xkua_ 161 NIT-TIPQGL------------------------PPSLTELHLDGNKITKVDAASLKGL--NNLAKLGLSFNSISAVD-- 211 (305)
T ss_dssp CCC-SCCSSC------------------------CTTCSEEECTTSCCCEECTGGGTTC--TTCCEEECCSSCCCEEC--
T ss_pred Ccc-ccCccc------------------------CCccCEEECCCCcCCCCChhHhhcc--ccccccccccccccccc--
Confidence 887 455432 2478899999999998888889888 89999999999998544
Q ss_pred cCccccCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccccCCCCCCCCCCCcccCCcccccccceeeecCC
Q 039925 268 HIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSASLPPLNSQHNHSFSCPGFEFSVIKLEFQIPGN 347 (549)
Q Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ls~N~~~~ip~~~~~~l~l~~~~~gn 347 (549)
+.++.++++|++|+|++|+|+ .+|..|..+++|+.|+|++|+|+. ++...+..-.....+ ..+.. +.+.||
T Consensus 212 --~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~-i~~~~f~~~~~~~~~----~~L~~-L~L~~N 282 (305)
T d1xkua_ 212 --NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKK----ASYSG-VSLFSN 282 (305)
T ss_dssp --TTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTS----CCCSE-EECCSS
T ss_pred --cccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc-cChhhccCcchhccc----CCCCE-EECCCC
Confidence 567888999999999999998 678899999999999999999984 443322211111111 11111 677888
Q ss_pred CCCCCC
Q 039925 348 KKLCGG 353 (549)
Q Consensus 348 ~~~c~~ 353 (549)
|+-+..
T Consensus 283 ~~~~~~ 288 (305)
T d1xkua_ 283 PVQYWE 288 (305)
T ss_dssp SSCGGG
T ss_pred cCccCc
Confidence 876644
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=8.9e-23 Score=196.61 Aligned_cols=223 Identities=17% Similarity=0.160 Sum_probs=144.4
Q ss_pred cceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeec
Q 039925 35 GVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFIC 114 (549)
Q Consensus 35 gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls 114 (549)
-|.|+. .+++ ++|..+. +.+++|+|++|+|+...+..|.++++|++|++++|++....+..+..+..+ +.++..
T Consensus 15 ~v~c~~--~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~-~~l~~~ 88 (284)
T d1ozna_ 15 TTSCPQ--QGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL-EQLDLS 88 (284)
T ss_dssp EEECCS--SCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECC
T ss_pred EEEcCC--CCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccc-cccccc
Confidence 466654 2333 5665543 467888888888875455577888888888888888876666666666776 666543
Q ss_pred -ccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCccc
Q 039925 115 -ETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGN 192 (549)
Q Consensus 115 -~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~ 192 (549)
.|.++...+..|.++++|++|++++|.+....+..+..+++|+.+++++|.+++..+..|..++ |++|++++|++
T Consensus 89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l--- 165 (284)
T d1ozna_ 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI--- 165 (284)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---
T ss_pred cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc---
Confidence 5556655566777777777777777777655555666677777777777777654445555544 55555555544
Q ss_pred CchhhhhcCCCCcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccc
Q 039925 193 LPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASS 272 (549)
Q Consensus 193 ~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~ 272 (549)
....+..|.++ ++|+.+++++|++++.. |..
T Consensus 166 -------------------------------------------~~l~~~~f~~l--~~L~~l~l~~N~l~~i~----~~~ 196 (284)
T d1ozna_ 166 -------------------------------------------SSVPERAFRGL--HSLDRLLLHQNRVAHVH----PHA 196 (284)
T ss_dssp -------------------------------------------CEECTTTTTTC--TTCCEEECCSSCCCEEC----TTT
T ss_pred -------------------------------------------cccchhhhccc--cccchhhhhhccccccC----hhH
Confidence 44444455555 66666666666666433 455
Q ss_pred cCCccccCeeeccCccccccCCccccCCCCCCEEEccCCcccc
Q 039925 273 LGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 273 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
|..+++|++|++++|++.+..+..|..+++|++|++++|++.+
T Consensus 197 f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred hhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence 6666777777777777765555666677777777777776664
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.5e-22 Score=195.03 Aligned_cols=235 Identities=17% Similarity=0.121 Sum_probs=190.7
Q ss_pred ecC-ccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecc-cccccccCCcccccccCccceeeecccccccccccc
Q 039925 48 CLT-PHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLA-NNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDF 125 (549)
Q Consensus 48 ~lp-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls-~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~ 125 (549)
.+| ..|.++++|++|++++|.+....+..+..++.++.++.. .|.++...|..|.++++| ++|++++|.+....+..
T Consensus 46 ~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L-~~L~l~~n~~~~~~~~~ 124 (284)
T d1ozna_ 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL-HTLHLDRCGLQELGPGL 124 (284)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC-CEEECTTSCCCCCCTTT
T ss_pred CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccC-CEEecCCcccccccccc
Confidence 565 479999999999999999998888888999999998775 566775667789999999 99999999998778888
Q ss_pred cCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCC
Q 039925 126 IGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKG 204 (549)
Q Consensus 126 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L 204 (549)
+..+.+|+.+++++|.+++..+..|..+++|++|++++|++.+..+..|.+++ |+.+++++|++++..|..|. .+
T Consensus 125 ~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~-~l--- 200 (284)
T d1ozna_ 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR-DL--- 200 (284)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TC---
T ss_pred cchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhh-hh---
Confidence 99999999999999999976678899999999999999999988889999999 99999999999976676654 33
Q ss_pred cEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeec
Q 039925 205 RNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLAL 284 (549)
Q Consensus 205 ~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~L 284 (549)
++|++|++++|.+.+..+..|..+ ++|+.|+|++|.+...-+ ...-...++.+..
T Consensus 201 ------------------~~L~~L~l~~N~i~~~~~~~~~~~--~~L~~L~l~~N~l~C~C~-----~~~l~~~l~~~~~ 255 (284)
T d1ozna_ 201 ------------------GRLMTLYLFANNLSALPTEALAPL--RALQYLRLNDNPWVCDCR-----ARPLWAWLQKFRG 255 (284)
T ss_dssp ------------------TTCCEEECCSSCCSCCCHHHHTTC--TTCCEEECCSSCEECSGG-----GHHHHHHHHHCCS
T ss_pred ------------------hhcccccccccccccccccccccc--cccCEEEecCCCCCCCcc-----chHHHHHHHhCcC
Confidence 368889999999998888888888 999999999998875431 1111234566666
Q ss_pred cCccccccCCccccCCCCCCEEEccCCcccc
Q 039925 285 DNNKLQGNLPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 285 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
..+++....|..+.+ +...+++.+.++|
T Consensus 256 ~~~~~~C~~p~~l~g---~~l~~l~~~~l~g 283 (284)
T d1ozna_ 256 SSSEVPCSLPQRLAG---RDLKRLAANDLQG 283 (284)
T ss_dssp EECCCBEEESGGGTT---CBGGGSCGGGSCC
T ss_pred CCCceEeCCchHHcC---CccccCCHHHCCC
Confidence 777777666766543 3444555555554
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.88 E-value=6.7e-22 Score=198.73 Aligned_cols=243 Identities=24% Similarity=0.280 Sum_probs=172.5
Q ss_pred cccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccc--------
Q 039925 52 HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLL-------- 123 (549)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~-------- 123 (549)
.+..+++|++|+|++|+|+ .+| .|+++++|++|++++|.+.+ +++ +..+++| +.|++++|.+++..+
T Consensus 61 gl~~L~nL~~L~Ls~N~l~-~l~-~l~~L~~L~~L~L~~n~i~~-i~~-l~~l~~L-~~L~~~~~~~~~~~~~~~~~~~~ 135 (384)
T d2omza2 61 GVEYLNNLTQINFSNNQLT-DIT-PLKNLTKLVDILMNNNQIAD-ITP-LANLTNL-TGLTLFNNQITDIDPLKNLTNLN 135 (384)
T ss_dssp TGGGCTTCCEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCCC-CGG-GTTCTTC-CEEECCSSCCCCCGGGTTCTTCS
T ss_pred ccccCCCCCEEeCcCCcCC-CCc-cccCCccccccccccccccc-ccc-ccccccc-ccccccccccccccccccccccc
Confidence 5778888999999999888 444 38888999999999998884 433 7788888 888888776653211
Q ss_pred -------------------------------------------------------cccCCCCCCCEEEeecceeeeeCCc
Q 039925 124 -------------------------------------------------------DFIGNPSAIQVMIFKENSLEGKFPN 148 (549)
Q Consensus 124 -------------------------------------------------------~~~~~l~~L~~L~L~~n~l~~~~p~ 148 (549)
..+..+++++.+++++|.+++..|
T Consensus 136 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~- 214 (384)
T d2omza2 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP- 214 (384)
T ss_dssp EEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred ccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-
Confidence 123345667777777777764332
Q ss_pred cccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecc-cccccccccCccccc
Q 039925 149 TLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILL-LAQKLYWSDVSTTAT 226 (549)
Q Consensus 149 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~-~~~~l~~l~~~~~L~ 226 (549)
+..+++|++|++++|.++. + ..+..++ |+.|++++|.+++..+ +. .+++|++|+++. .+..+..+...+.++
T Consensus 215 -~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~L~l~~~~l~~~~~~~~~~~l~ 288 (384)
T d2omza2 215 -LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISPLAGLTALT 288 (384)
T ss_dssp -GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGGGTTCTTCS
T ss_pred -ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--cc-ccccCCEeeccCcccCCCCccccccccc
Confidence 4556777888888777763 2 3466667 8888888888774322 33 677888888765 444444444555677
Q ss_pred EEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEE
Q 039925 227 IIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMEL 306 (549)
Q Consensus 227 ~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 306 (549)
.+.+..|.+.+. ..+..+ ++++.|++++|++++. + .+..+++|++|++++|++++ ++ .+.++++|++|
T Consensus 289 ~l~~~~n~l~~~--~~~~~~--~~l~~L~ls~n~l~~l-----~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L 356 (384)
T d2omza2 289 NLELNENQLEDI--SPISNL--KNLTYLTLYFNNISDI-----S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWL 356 (384)
T ss_dssp EEECCSSCCSCC--GGGGGC--TTCSEEECCSSCCSCC-----G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEE
T ss_pred cccccccccccc--cccchh--cccCeEECCCCCCCCC-----c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEE
Confidence 777777777642 346666 8889999999988742 2 27788899999999998883 44 58888999999
Q ss_pred EccCCcccccCC
Q 039925 307 SVSRNKLSASLP 318 (549)
Q Consensus 307 ~Ls~N~l~~~~p 318 (549)
++++|++++..|
T Consensus 357 ~l~~N~l~~l~~ 368 (384)
T d2omza2 357 SAGHNQISDLTP 368 (384)
T ss_dssp ECCSSCCCBCGG
T ss_pred ECCCCcCCCChh
Confidence 999999886443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=3.7e-22 Score=190.22 Aligned_cols=201 Identities=18% Similarity=0.143 Sum_probs=125.5
Q ss_pred CCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCE
Q 039925 55 NFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQV 134 (549)
Q Consensus 55 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~ 134 (549)
+...+...+.++++++ .+|..+. ++|++|+|++|+|++..+..|.++++| ++|+|++|+|+.. + .++.+++|++
T Consensus 8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L-~~L~L~~N~l~~l-~-~~~~l~~L~~ 81 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRL-TQLNLDRAELTKL-Q-VDGTLPVLGT 81 (266)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTC-CEEECTTSCCCEE-E-CCSCCTTCCE
T ss_pred ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccc-ccccccccccccc-c-cccccccccc
Confidence 3445556677777777 5665553 457777777777764334556667777 7777777766532 2 2455666777
Q ss_pred EEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccccceeeCCCCcCcccCchhhhhcCCCCcEeeeccccc
Q 039925 135 MIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNISLKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQ 214 (549)
Q Consensus 135 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~ 214 (549)
|+|++|+++ ..+..+..+++|++|++++|.+....+..+..+.
T Consensus 82 L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~------------------------------------ 124 (266)
T d1p9ag_ 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG------------------------------------ 124 (266)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT------------------------------------
T ss_pred ccccccccc-ccccccccccccccccccccccceeecccccccc------------------------------------
Confidence 777666666 4455666666666666666666544444444443
Q ss_pred ccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCC
Q 039925 215 KLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLP 294 (549)
Q Consensus 215 ~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p 294 (549)
+++.|++++|.+....+..+..+ ++|+.|++++|++++.. +..|..+++|++|+|++|+|+ .+|
T Consensus 125 ---------~l~~L~l~~n~l~~l~~~~~~~l--~~l~~l~l~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~L~-~lp 188 (266)
T d1p9ag_ 125 ---------ELQELYLKGNELKTLPPGLLTPT--PKLEKLSLANNNLTELP----AGLLNGLENLDTLLLQENSLY-TIP 188 (266)
T ss_dssp ---------TCCEEECTTSCCCCCCTTTTTTC--TTCCEEECTTSCCSCCC----TTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred ---------ccccccccccccceecccccccc--ccchhcccccccccccC----ccccccccccceeecccCCCc-ccC
Confidence 34444444555544444444555 67777777777776432 455677777777777777777 677
Q ss_pred ccccCCCCCCEEEccCCccc
Q 039925 295 SSLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 295 ~~l~~l~~L~~L~Ls~N~l~ 314 (549)
..+..+++|+.|+|++|++.
T Consensus 189 ~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 189 KGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TTTTTTCCCSEEECCSCCBC
T ss_pred hhHCCCCCCCEEEecCCCCC
Confidence 77777777777777777765
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=9.1e-22 Score=187.45 Aligned_cols=146 Identities=21% Similarity=0.191 Sum_probs=123.2
Q ss_pred ceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecc
Q 039925 36 VTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICE 115 (549)
Q Consensus 36 v~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~ 115 (549)
|.|+. .+++ .||+.+. +++++|+|++|.|++..+..|.++++|++|+|++|+|+ .+|. +..+++| ++|+|++
T Consensus 15 v~C~~--~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L-~~L~Ls~ 86 (266)
T d1p9ag_ 15 VNCDK--RNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVL-GTLDLSH 86 (266)
T ss_dssp EECTT--SCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTC-CEEECCS
T ss_pred EEccC--CCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-ccccccc-ccccccc
Confidence 77864 4455 5787664 58999999999999666678999999999999999998 5553 5789999 9999999
Q ss_pred cccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCc
Q 039925 116 THLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFT 190 (549)
Q Consensus 116 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~ 190 (549)
|+++. .+..+..+++|++|++++|.+....+..+..+.++++|++++|.+....+..+..++ ++.+++++|+++
T Consensus 87 N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~ 161 (266)
T d1p9ag_ 87 NQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (266)
T ss_dssp SCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence 99984 567899999999999999999977888889999999999999999866666666676 777777777776
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.87 E-value=5.1e-21 Score=192.21 Aligned_cols=254 Identities=20% Similarity=0.247 Sum_probs=172.6
Q ss_pred cCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCC
Q 039925 54 GNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQ 133 (549)
Q Consensus 54 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~ 133 (549)
..+.+|++|+++++.|+ .+ +.+..+++|++|+|++|+|+ .+|. +.++++| ++|++++|++.+.. .++++++|+
T Consensus 41 ~~l~~l~~L~l~~~~I~-~l-~gl~~L~nL~~L~Ls~N~l~-~l~~-l~~L~~L-~~L~L~~n~i~~i~--~l~~l~~L~ 113 (384)
T d2omza2 41 TDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLT-DITP-LKNLTKL-VDILMNNNQIADIT--PLANLTNLT 113 (384)
T ss_dssp HHHTTCCEEECCSSCCC-CC-TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTC-CEEECCSSCCCCCG--GGTTCTTCC
T ss_pred HHhCCCCEEECCCCCCC-Cc-cccccCCCCCEEeCcCCcCC-CCcc-ccCCccc-cccccccccccccc--ccccccccc
Confidence 45778999999999998 45 46889999999999999999 4554 9999999 99999999998654 388999999
Q ss_pred EEEeecceeeeeCC---------------------------------------------------------------ccc
Q 039925 134 VMIFKENSLEGKFP---------------------------------------------------------------NTL 150 (549)
Q Consensus 134 ~L~L~~n~l~~~~p---------------------------------------------------------------~~~ 150 (549)
.|++++|.+++..+ ..+
T Consensus 114 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (384)
T d2omza2 114 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193 (384)
T ss_dssp EEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 99999888763111 123
Q ss_pred cCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecc-cccccccccCcccccEE
Q 039925 151 SNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILL-LAQKLYWSDVSTTATII 228 (549)
Q Consensus 151 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~-~~~~l~~l~~~~~L~~L 228 (549)
..+++++.+++++|.+++..| +.... |++|++++|.++ .++ .+. .+++|+.|++.+ .+..+..+...++|+.|
T Consensus 194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L 268 (384)
T d2omza2 194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNLAPLSGLTKLTEL 268 (384)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-Ccc-hhh-cccccchhccccCccCCCCcccccccCCEe
Confidence 344566666666666654332 23334 666666666665 233 333 566666666665 33444444445566777
Q ss_pred EccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCCCEEEc
Q 039925 229 AMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNLMELSV 308 (549)
Q Consensus 229 ~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 308 (549)
++++|++.+.. .+..+ +.++.+.+..|.+++ ...+..+++++.|++++|++++. + .+..+++|+.|++
T Consensus 269 ~l~~~~l~~~~--~~~~~--~~l~~l~~~~n~l~~------~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L 336 (384)
T d2omza2 269 KLGANQISNIS--PLAGL--TALTNLELNENQLED------ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFF 336 (384)
T ss_dssp ECCSSCCCCCG--GGTTC--TTCSEEECCSSCCSC------CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEEC
T ss_pred eccCcccCCCC--ccccc--ccccccccccccccc------ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEEC
Confidence 77666666432 24445 666667776666653 13466778888888888888753 3 3777888888888
Q ss_pred cCCcccccCCCC---------CCCCCCCcccCC
Q 039925 309 SRNKLSASLPPL---------NSQHNHSFSCPG 332 (549)
Q Consensus 309 s~N~l~~~~p~~---------~ls~N~~~~ip~ 332 (549)
++|++++ ++.. ++++|++..+|+
T Consensus 337 ~~n~l~~-l~~l~~l~~L~~L~l~~N~l~~l~~ 368 (384)
T d2omza2 337 ANNKVSD-VSSLANLTNINWLSAGHNQISDLTP 368 (384)
T ss_dssp CSSCCCC-CGGGGGCTTCCEEECCSSCCCBCGG
T ss_pred CCCCCCC-ChhHcCCCCCCEEECCCCcCCCChh
Confidence 8888774 2211 666666665554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.85 E-value=1.6e-20 Score=182.52 Aligned_cols=231 Identities=19% Similarity=0.224 Sum_probs=192.3
Q ss_pred ecCc-cccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeeccccccccccccc
Q 039925 48 CLTP-HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFI 126 (549)
Q Consensus 48 ~lp~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~ 126 (549)
.+|+ .|.++++|++|++++|.+....|..|.++++|++|++++|+++ .+|..+ ...+ +.|++++|.+....+..+
T Consensus 45 ~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l-~~L~~~~n~l~~l~~~~~ 120 (305)
T d1xkua_ 45 EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTL-QELRVHENEITKVRKSVF 120 (305)
T ss_dssp CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTC-CEEECCSSCCCBBCHHHH
T ss_pred CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch--hhhh-hhhhccccchhhhhhhhh
Confidence 6665 7999999999999999999777889999999999999999999 677654 3567 899999999998877788
Q ss_pred CCCCCCCEEEeecceee--eeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCC
Q 039925 127 GNPSAIQVMIFKENSLE--GKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPK 203 (549)
Q Consensus 127 ~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~ 203 (549)
.....++.++...|... ...+..+..+++|+.+++++|.+. .+|..+ .+ |+.|++++|..+...+..+. .+
T Consensus 121 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~-~~-- 194 (305)
T d1xkua_ 121 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLK-GL-- 194 (305)
T ss_dssp TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGT-TC--
T ss_pred hccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhh-cc--
Confidence 88999999999888654 345667888999999999999987 344432 45 99999999999876666554 32
Q ss_pred CcEeeecccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeee
Q 039925 204 GRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLA 283 (549)
Q Consensus 204 L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~ 283 (549)
+.++.|++++|.+.+..+..+..+ ++|+.|+|++|+++ .+ |.++..+++|++|+
T Consensus 195 -------------------~~l~~L~~s~n~l~~~~~~~~~~l--~~L~~L~L~~N~L~-~l----p~~l~~l~~L~~L~ 248 (305)
T d1xkua_ 195 -------------------NNLAKLGLSFNSISAVDNGSLANT--PHLRELHLNNNKLV-KV----PGGLADHKYIQVVY 248 (305)
T ss_dssp -------------------TTCCEEECCSSCCCEECTTTGGGS--TTCCEEECCSSCCS-SC----CTTTTTCSSCCEEE
T ss_pred -------------------cccccccccccccccccccccccc--ccceeeeccccccc-cc----ccccccccCCCEEE
Confidence 367888999999998888889999 99999999999998 34 67889999999999
Q ss_pred ccCccccccCCc------cccCCCCCCEEEccCCccc
Q 039925 284 LDNNKLQGNLPS------SLGYYQNLMELSVSRNKLS 314 (549)
Q Consensus 284 Ls~N~l~~~~p~------~l~~l~~L~~L~Ls~N~l~ 314 (549)
|++|+|+..... .+..+++|+.|+|++|+++
T Consensus 249 Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 999999843222 3356789999999999986
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.7e-20 Score=177.99 Aligned_cols=81 Identities=25% Similarity=0.350 Sum_probs=71.3
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
.++|...+.||+|+||.||+|++.++.. +|+|.. ++..++|
T Consensus 4 p~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-----~~~~~lv 78 (263)
T d1sm2a_ 4 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-----QAPICLV 78 (263)
T ss_dssp CSCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-----SSSCEEE
T ss_pred hHHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceecc-----CCceEEE
Confidence 3578888899999999999999976643 688887 7789999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||++|+|.+++.... ..++|..++.++.|||+||+|||
T Consensus 79 ~E~~~~g~L~~~l~~~~-----~~~~~~~~~~i~~qia~gl~~lH 118 (263)
T d1sm2a_ 79 FEFMEHGCLSDYLRTQR-----GLFAAETLLGMCLDVCEGMAYLE 118 (263)
T ss_dssp EECCTTCBHHHHHHTTT-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCcHHHHhhccc-----cCCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999987653 56899999999999999999999
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.77 E-value=1.9e-19 Score=162.32 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=131.6
Q ss_pred CCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecC-CccccCCCCCCEeecccccccccCCcccccccCccc
Q 039925 31 CQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEI-PEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLT 109 (549)
Q Consensus 31 c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 109 (549)
|+|..|.|+.. +++ .||+.+. +++++|+|++|.|+..+ +..|.++++|+.|+|++|.+....+..+..+++| +
T Consensus 8 C~~~~v~Cs~~--~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L-~ 81 (192)
T d1w8aa_ 8 CEGTTVDCTGR--GLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI-Q 81 (192)
T ss_dssp EETTEEECTTS--CCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC-C
T ss_pred EcCCEEEEeCC--CcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccc-c
Confidence 67999999753 344 6777664 68999999999998644 5678999999999999999998888889999999 9
Q ss_pred eeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCc
Q 039925 110 KLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENS 188 (549)
Q Consensus 110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~ 188 (549)
+|+|++|+|+...+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+....... .-.. ++.+.+..+.
T Consensus 82 ~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~ 160 (192)
T d1w8aa_ 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGA 160 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGG
T ss_pred eeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCC
Confidence 9999999999888899999999999999999999888889999999999999999987543321 1123 6667777777
Q ss_pred CcccCchhh
Q 039925 189 FTGNLPLEI 197 (549)
Q Consensus 189 l~~~~p~~~ 197 (549)
++...|..+
T Consensus 161 ~~c~~p~~l 169 (192)
T d1w8aa_ 161 ARCGAPSKV 169 (192)
T ss_dssp CBBCSSTTT
T ss_pred eEeCCChhh
Confidence 776566543
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.7e-20 Score=175.85 Aligned_cols=81 Identities=27% Similarity=0.433 Sum_probs=68.9
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce-----------------------------------eEEEeccccCCCceEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT-----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~-----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
..++|...+.||+|+||.||+|++++... +|+|.. +..+
T Consensus 6 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~------~~~~ 79 (276)
T d1uwha_ 6 PDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA------PQLA 79 (276)
T ss_dssp CTTCCCCCSEEEECSSCEEEEEESSSEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS------SSCE
T ss_pred ccccEEEEEEEeeCCCcEEEEEEECCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec------cEEE
Confidence 45788999999999999999999765422 566653 5679
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|||||++|+|.++++..+ ..++|..++.|+.|||+||+|||
T Consensus 80 lv~Ey~~~g~L~~~l~~~~-----~~~~~~~~~~i~~qi~~gl~yLH 121 (276)
T d1uwha_ 80 IVTQWCEGSSLYHHLHIIE-----TKFEMIKLIDIARQTAQGMDYLH 121 (276)
T ss_dssp EEEECCCEEEHHHHHHTSC-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999997644 46999999999999999999999
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.5e-18 Score=162.38 Aligned_cols=154 Identities=13% Similarity=0.133 Sum_probs=99.4
Q ss_pred CCCCcceeCCCCCceEeecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCC-cccccccCccc
Q 039925 31 CQWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIP-ANLSHCSNLLT 109 (549)
Q Consensus 31 c~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~ 109 (549)
|+++.|.|... +++ .+|..+. +++++|+|++|+|+...+..|.++++|++|++++|.+...++ ..|..++.+ +
T Consensus 8 C~~~~i~c~~~--~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l-~ 81 (242)
T d1xwdc1 8 CSNRVFLCQES--KVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL-H 81 (242)
T ss_dssp ECSSEEEEESC--SCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTC-C
T ss_pred CcCCEEEEeCC--CCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccc-c
Confidence 56777888642 344 5666543 478888888888884444578888888888888888775443 456778887 7
Q ss_pred eeeec-ccccccccccccCCCCCCCEEEeecceeeeeCCc-cccCCCCCCEEecccCcceecccccccccc--cceeeCC
Q 039925 110 KLFIC-ETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPN-TLSNLRSLFYDNINRNEFSGLIPSFIFNIS--LKWNFLP 185 (549)
Q Consensus 110 ~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--L~~L~l~ 185 (549)
+|.+. .|++....+..|.++++|++|++++|.+....+. .+..++.+..+...++.+....+..|.++. ++.|+++
T Consensus 82 ~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~ 161 (242)
T d1xwdc1 82 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 161 (242)
T ss_dssp EEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred cccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecc
Confidence 77765 4567666777778888888888888877632221 223344444445555555544444554443 5556666
Q ss_pred CCcCc
Q 039925 186 ENSFT 190 (549)
Q Consensus 186 ~n~l~ 190 (549)
+|+++
T Consensus 162 ~n~l~ 166 (242)
T d1xwdc1 162 KNGIQ 166 (242)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 65555
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.1e-19 Score=171.39 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=71.7
Q ss_pred cccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
.++|...+.||+|+||.||+|+++++.. +|+|.. .+..++|
T Consensus 3 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~-----~~~~~iv 77 (258)
T d1k2pa_ 3 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK-----QRPIFII 77 (258)
T ss_dssp CCCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECC-----SSSEEEE
T ss_pred hHHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEee-----CCceEEE
Confidence 3689999999999999999999986642 688887 7789999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.+++.... ..++|..+.+++.|+|+||+|||
T Consensus 78 ~Ey~~~g~l~~~~~~~~-----~~~~~~~~~~i~~qi~~gl~~LH 117 (258)
T d1k2pa_ 78 TEYMANGCLLNYLREMR-----HRFQTQQLLEMCKDVCEAMEYLE 117 (258)
T ss_dssp EECCTTEEHHHHHHSGG-----GCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEccCCCcHHHhhhccc-----cCCcHHHHHHHHHHHHHHHHHHh
Confidence 99999999999987654 46889999999999999999999
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=1.3e-19 Score=174.98 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=68.4
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cc----e-----------------------------------eEEEeccccCCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KW----T-----------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~----~-----------------------------------~g~~~~~~~~~~ 433 (549)
.++|...++||+|+||.||+|+++. +. + +|+|.. +
T Consensus 25 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~-----~ 99 (299)
T d1jpaa_ 25 ISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTK-----S 99 (299)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----S
T ss_pred hhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEee-----C
Confidence 4556677899999999999999753 21 1 688877 7
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++|||||++|+|.+++.... ..++|.+++.++.|||+||+|||
T Consensus 100 ~~~~iv~Ey~~~g~L~~~~~~~~-----~~l~~~~~~~i~~qia~gl~yLH 145 (299)
T d1jpaa_ 100 TPVMIITEFMENGSLDSFLRQND-----GQFTVIQLVGMLRGIAAGMKYLA 145 (299)
T ss_dssp SSCEEEEECCTTEEHHHHHHTTT-----TCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEecCCCcceeeecccc-----CCCCHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999988643 46999999999999999999999
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.3e-19 Score=171.67 Aligned_cols=141 Identities=13% Similarity=0.236 Sum_probs=101.9
Q ss_pred ccccCcCCCc-cccCceecEEEEEeCCCc----e-----------------------------------eEEEeccccCC
Q 039925 393 VTNEFSSSNM-IGQGSFGSVYKGILGEKW----T-----------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 393 ~~~~~~~~~~-lG~G~~g~Vy~~~~~~~~----~-----------------------------------~g~~~~~~~~~ 432 (549)
..++|...++ ||+|+||.||+|.++... + +|+|..
T Consensus 6 ~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~----- 80 (285)
T d1u59a_ 6 KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA----- 80 (285)
T ss_dssp CGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-----
T ss_pred cccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-----
Confidence 3456666664 999999999999875321 2 677754
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh----------------------------
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR---------------------------- 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH---------------------------- 484 (549)
+..++|||||++|+|.+++...+ ..++|..+++++.|||+||+|||
T Consensus 81 -~~~~lvmE~~~~g~L~~~l~~~~-----~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFG 154 (285)
T d1u59a_ 81 -EALMLVMEMAGGGPLHKFLVGKR-----EEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFG 154 (285)
T ss_dssp -SSEEEEEECCTTEEHHHHHTTCT-----TTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCT
T ss_pred -CeEEEEEEeCCCCcHHHHhhccc-----cCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccch
Confidence 45799999999999999987543 46999999999999999999999
Q ss_pred ----------------------------------------------------c--cccCCc----ceeeec-cCcccchH
Q 039925 485 ----------------------------------------------------V--KMALPE----KVMEIV-ESSLLLEI 505 (549)
Q Consensus 485 ----------------------------------------------------~--~~~~~~----~~~~~~-~~~~~~~~ 505 (549)
. ...+.+ .+...+ ....++.+
T Consensus 155 la~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~~~~~~~p 234 (285)
T d1u59a_ 155 LSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECP 234 (285)
T ss_dssp TCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCC
T ss_pred hhhcccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCC
Confidence 0 000000 000111 11111122
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhhh
Q 039925 506 EDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHARENV 544 (549)
Q Consensus 506 ~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~~ 544 (549)
..++.++.+++.+||+.+|++||+|.+|++.|+.+..++
T Consensus 235 ~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~~~ 273 (285)
T d1u59a_ 235 PECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL 273 (285)
T ss_dssp TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence 567788999999999999999999999999998876543
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=6.9e-20 Score=173.17 Aligned_cols=142 Identities=24% Similarity=0.235 Sum_probs=105.5
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce--------------------------------eEEEeccccCCCceEEEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT--------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
..++|...+.||+|+||.||+|++.+..+ +|+|... .+..++||
T Consensus 5 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~----~~~~~lv~ 80 (262)
T d1byga_ 5 NMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEE----KGGLYIVT 80 (262)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC------CCEEEE
T ss_pred CHHHeEEeEEEecCCCeEEEEEEECCeEEEEEEECcHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEec----CCcEEEEE
Confidence 35678888999999999999999976654 6777541 35579999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh------------------------------------
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR------------------------------------ 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH------------------------------------ 484 (549)
||+++|+|.++|+... ...++|..+++++.|||+||.|||
T Consensus 81 ey~~~g~L~~~l~~~~----~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~ 156 (262)
T d1byga_ 81 EYMAKGSLVDYLRSRG----RSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST 156 (262)
T ss_dssp CCCTTEEHHHHHHHHH----HHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-------
T ss_pred eccCCCCHHHHHHhcC----CCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccceecCCC
Confidence 9999999999997543 235899999999999999999999
Q ss_pred --------------------------------------ccccCCc------ceeeeccC-cccchHHHHHHHHHHHHHHh
Q 039925 485 --------------------------------------VKMALPE------KVMEIVES-SLLLEIEDCLVSVLTIGILC 519 (549)
Q Consensus 485 --------------------------------------~~~~~~~------~~~~~~~~-~~~~~~~~~~~~l~~l~~~C 519 (549)
.....+. .+...+.. ..++.+..++.++.+++.+|
T Consensus 157 ~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~c 236 (262)
T d1byga_ 157 QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNC 236 (262)
T ss_dssp -----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHH
T ss_pred CccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHH
Confidence 0000000 01111111 11112245667899999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhh
Q 039925 520 SVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 520 ~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
|+.||.+||||.||++.|++++.
T Consensus 237 l~~dP~~Rps~~~l~~~L~~i~~ 259 (262)
T d1byga_ 237 WHLDAAMRPSFLQLREQLEHIKT 259 (262)
T ss_dssp TCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cccCHhHCcCHHHHHHHHHHHHh
Confidence 99999999999999999998864
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.6e-19 Score=173.90 Aligned_cols=148 Identities=23% Similarity=0.277 Sum_probs=110.7
Q ss_pred ccccccCcCCCccccCceecEEEEEeCCCc----e------------------------------------eEEEecccc
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGEKW----T------------------------------------AGYSEGTDF 430 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~----~------------------------------------~g~~~~~~~ 430 (549)
+...++|...++||+|+||.||+|++.+.. + +|+|..
T Consensus 6 ~i~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~--- 82 (309)
T d1fvra_ 6 VLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH--- 82 (309)
T ss_dssp BCCGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEE---
T ss_pred ccCHHHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEec---
Confidence 456788999999999999999999985431 1 677877
Q ss_pred CCCceEEEEEeecCCCCcccccccCC----------CCCCCCCCchhhhHHHHHHHHHHHHHhh----------------
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSN----------NKLKPSSLSMIRKLSTTIDVASAIEYLR---------------- 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~----------~~~~~~~l~~~~~~~ia~~va~gl~yLH---------------- 484 (549)
++..++||||+++|+|.++|+... .......++|.++++++.|||+||.|+|
T Consensus 83 --~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~ 160 (309)
T d1fvra_ 83 --RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILV 160 (309)
T ss_dssp --TTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEE
T ss_pred --CCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEE
Confidence 788999999999999999997541 0012357999999999999999999999
Q ss_pred ------------------------------------------------------------cccc--CCc----ce-eeec
Q 039925 485 ------------------------------------------------------------VKMA--LPE----KV-MEIV 497 (549)
Q Consensus 485 ------------------------------------------------------------~~~~--~~~----~~-~~~~ 497 (549)
.... +.+ .+ ..+.
T Consensus 161 ~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~ 240 (309)
T d1fvra_ 161 GENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLP 240 (309)
T ss_dssp CGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGG
T ss_pred cCCCceEEccccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 0000 100 01 1111
Q ss_pred cCcccchHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhh
Q 039925 498 ESSLLLEIEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHAREN 543 (549)
Q Consensus 498 ~~~~~~~~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~ 543 (549)
.......+..++.++.+++.+||+.+|++||+|.||++.|+++.++
T Consensus 241 ~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 286 (309)
T d1fvra_ 241 QGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE 286 (309)
T ss_dssp GTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred hcCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 1111122245677899999999999999999999999999988753
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.74 E-value=6.1e-18 Score=156.63 Aligned_cols=204 Identities=20% Similarity=0.260 Sum_probs=142.5
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeec
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKE 139 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (549)
..++++.+++++.. .+..+.+|+.|++.+|+|+ .++ ++..+++| ++|++++|.+++..| +..+++|+++++++
T Consensus 22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L-~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~ 94 (227)
T d1h6ua2 22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNL-IGLELKDNQITDLAP--LKNLTKITELELSG 94 (227)
T ss_dssp HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTC-CEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hHhcCCCC-cEeecCCceeecccc--cccccccccccccc
Confidence 34555666665433 3456677788888888777 453 57777887 888888887765433 67778888888888
Q ss_pred ceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeeccccccccc
Q 039925 140 NSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYW 218 (549)
Q Consensus 140 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~ 218 (549)
|.++ .+ ..+..+++|++++++++...+. ..+.... ++.+.++++.+....+ +. .
T Consensus 95 n~~~-~i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~-~------------------ 149 (227)
T d1h6ua2 95 NPLK-NV-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LA-G------------------ 149 (227)
T ss_dssp CCCS-CC-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GG-G------------------
T ss_pred cccc-cc-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhhh--hc-c------------------
Confidence 8776 33 3477788888888887776532 2244445 7777777777653222 11 1
Q ss_pred ccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCcccc
Q 039925 219 SDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLG 298 (549)
Q Consensus 219 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 298 (549)
.++|+.|++++|.+.+. ..+..+ ++|+.|++++|++++ + + .+.++++|++|+|++|++++ ++ .+.
T Consensus 150 ---~~~L~~L~l~~n~~~~~--~~l~~l--~~L~~L~Ls~n~l~~-l----~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~ 214 (227)
T d1h6ua2 150 ---LTNLQYLSIGNAQVSDL--TPLANL--SKLTTLKADDNKISD-I----S-PLASLPNLIEVHLKNNQISD-VS-PLA 214 (227)
T ss_dssp ---CTTCCEEECCSSCCCCC--GGGTTC--TTCCEEECCSSCCCC-C----G-GGGGCTTCCEEECTTSCCCB-CG-GGT
T ss_pred ---ccccccccccccccccc--hhhccc--ccceecccCCCccCC-C----h-hhcCCCCCCEEECcCCcCCC-Cc-ccc
Confidence 23677888888887643 236777 899999999999873 3 2 37888999999999999984 44 388
Q ss_pred CCCCCCEEEccC
Q 039925 299 YYQNLMELSVSR 310 (549)
Q Consensus 299 ~l~~L~~L~Ls~ 310 (549)
++++|+.|++++
T Consensus 215 ~l~~L~~L~lsn 226 (227)
T d1h6ua2 215 NTSNLFIVTLTN 226 (227)
T ss_dssp TCTTCCEEEEEE
T ss_pred cCCCCCEEEeeC
Confidence 999999999874
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=2.8e-19 Score=171.53 Aligned_cols=141 Identities=22% Similarity=0.329 Sum_probs=107.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc--e---------------------------------eEEEeccccCCCceEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW--T---------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~--~---------------------------------~g~~~~~~~~~~~~~~ 437 (549)
..++|...+.||+|+||.||+|++.+.. + +|+|.. .+..+
T Consensus 15 ~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-----~~~~~ 89 (287)
T d1opja_ 15 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-----EPPFY 89 (287)
T ss_dssp CGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-----SSSCE
T ss_pred cHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEee-----CCeeE
Confidence 4567888899999999999999986432 2 677877 78899
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh---------------------------------
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR--------------------------------- 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH--------------------------------- 484 (549)
+|||||++|+|.+++.... ...++|..++.|+.|||+||+|||
T Consensus 90 iv~E~~~~g~l~~~l~~~~----~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~ 165 (287)
T d1opja_ 90 IITEFMTYGNLLDYLRECN----RQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLM 165 (287)
T ss_dssp EEEECCTTCBHHHHHHHSC----TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTC
T ss_pred EEeecccCcchHHHhhhcc----ccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeec
Confidence 9999999999999997643 357899999999999999999999
Q ss_pred ---------------------------------------------c-ccc-CCc----ceeeeccCccc-chHHHHHHHH
Q 039925 485 ---------------------------------------------V-KMA-LPE----KVMEIVESSLL-LEIEDCLVSV 512 (549)
Q Consensus 485 ---------------------------------------------~-~~~-~~~----~~~~~~~~~~~-~~~~~~~~~l 512 (549)
. ... ... .+.+.+..+.. +.+..++.++
T Consensus 166 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l 245 (287)
T d1opja_ 166 TGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKV 245 (287)
T ss_dssp CSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHH
T ss_pred CCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCCCCCCccchHHH
Confidence 0 000 000 01112222211 1124567789
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHhhh
Q 039925 513 LTIGILCSVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 513 ~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
.+++.+||+.+|++||||.||++.|+.+.+
T Consensus 246 ~~li~~cl~~dP~~Rps~~ei~~~L~~~~~ 275 (287)
T d1opja_ 246 YELMRACWQWNPSDRPSFAEIHQAFETMFQ 275 (287)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999998754
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2e-19 Score=171.36 Aligned_cols=82 Identities=18% Similarity=0.336 Sum_probs=69.4
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..++|...+.||+|+||.||+|+++++.. +|+|.. +..++
T Consensus 11 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~------~~~~i 84 (272)
T d1qpca_ 11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ------EPIYI 84 (272)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS------SSCEE
T ss_pred CHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeecc------CCeEE
Confidence 45678888999999999999999987643 576653 55789
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|.++++... ...++|..+++|+.|||+||.|||
T Consensus 85 v~Ey~~~g~L~~~~~~~~----~~~l~~~~~~~i~~qi~~gl~~lH 126 (272)
T d1qpca_ 85 ITEYMENGSLVDFLKTPS----GIKLTINKLLDMAAQIAEGMAFIE 126 (272)
T ss_dssp EEECCTTCBHHHHTTSHH----HHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcHHHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887543 245899999999999999999999
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.3e-17 Score=155.84 Aligned_cols=219 Identities=16% Similarity=0.147 Sum_probs=157.6
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeeccccccccc-ccccCCCCCCCEEEee
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQL-LDFIGNPSAIQVMIFK 138 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~ 138 (549)
++++.++.+++ .+|..+. +++++|+|++|+|+...+..|.++++| ++|++++|.+...+ +..|.++++++++.+.
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L-~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~ 86 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDL-EKIEISQNDVLEVIEADVFSNLPKLHEIRIE 86 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTC-CEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchh-hhhhhccccccceeecccccccccccccccc
Confidence 46777888888 7887653 579999999999984444468899999 99999999987654 4578899999999986
Q ss_pred c-ceeeeeCCccccCCCCCCEEecccCcceecccc-cccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccc
Q 039925 139 E-NSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPS-FIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQK 215 (549)
Q Consensus 139 ~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~ 215 (549)
. |.+....+..|.++++|++|++++|.+....+. .+..+. +..+...++.+. .++...+.
T Consensus 87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~-~i~~~~~~---------------- 149 (242)
T d1xwdc1 87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFV---------------- 149 (242)
T ss_dssp CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC-EECTTSST----------------
T ss_pred ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccc-cccccccc----------------
Confidence 4 678777888899999999999999988743332 233445 666666777766 33332211
Q ss_pred cccccCcccccEEEccccccccccChhhhhccccCccEE-EcCCCcccccCCCcCccccCCccccCeeeccCccccccCC
Q 039925 216 LYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYAL-TMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLP 294 (549)
Q Consensus 216 l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L-~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p 294 (549)
.....++.|++++|+++...+..+ .. .++..+ .+++|.++ .+| +..|.++++|++|+|++|+++...+
T Consensus 150 ----~~~~~l~~L~l~~n~l~~i~~~~~-~~--~~l~~~~~l~~n~l~-~l~---~~~f~~l~~L~~L~Ls~N~l~~l~~ 218 (242)
T d1xwdc1 150 ----GLSFESVILWLNKNGIQEIHNCAF-NG--TQLDELNLSDNNNLE-ELP---NDVFHGASGPVILDISRTRIHSLPS 218 (242)
T ss_dssp ----TSBSSCEEEECCSSCCCEECTTTT-TT--CCEEEEECTTCTTCC-CCC---TTTTTTSCCCSEEECTTSCCCCCCS
T ss_pred ----cccccceeeecccccccccccccc-cc--hhhhccccccccccc-ccc---HHHhcCCCCCCEEECCCCcCCccCH
Confidence 122368888999999885544444 34 455555 56777787 454 3457889999999999999984444
Q ss_pred ccccCCCCCCEEEccC
Q 039925 295 SSLGYYQNLMELSVSR 310 (549)
Q Consensus 295 ~~l~~l~~L~~L~Ls~ 310 (549)
..|.++++|+.+++.+
T Consensus 219 ~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 219 YGLENLKKLRARSTYN 234 (242)
T ss_dssp SSCTTCCEEESSSEES
T ss_pred HHHcCCcccccCcCCC
Confidence 4567777776666543
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=5.3e-19 Score=169.38 Aligned_cols=140 Identities=23% Similarity=0.412 Sum_probs=105.6
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc------e-----------------------------------eEEEeccccC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW------T-----------------------------------AGYSEGTDFK 431 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~------~-----------------------------------~g~~~~~~~~ 431 (549)
..+.|..+++||+|+||.||+|.+++.. + +|+|..
T Consensus 5 ~~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~---- 80 (283)
T d1mqba_ 5 HPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK---- 80 (283)
T ss_dssp CTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS----
T ss_pred CHHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEec----
Confidence 4567888999999999999999975432 1 688877
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh---------------------------
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR--------------------------- 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH--------------------------- 484 (549)
.+..++|||||++|++.+++.... ..++|.++++++.|||+||+|||
T Consensus 81 -~~~~~~v~e~~~~~~l~~~~~~~~-----~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DF 154 (283)
T d1mqba_ 81 -YKPMMIITEYMENGALDKFLREKD-----GEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDF 154 (283)
T ss_dssp -SSSEEEEEECCTTEEHHHHHHHTT-----TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC
T ss_pred -CCceEEEEEecccCcchhhhhccc-----ccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEccc
Confidence 778999999999999999887653 56999999999999999999999
Q ss_pred --c--------------------cccCCc-------------------------------------ceeeeccCcc-cch
Q 039925 485 --V--------------------KMALPE-------------------------------------KVMEIVESSL-LLE 504 (549)
Q Consensus 485 --~--------------------~~~~~~-------------------------------------~~~~~~~~~~-~~~ 504 (549)
. ..+.|+ .+.+.+..+. ++.
T Consensus 155 Gla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~ 234 (283)
T d1mqba_ 155 GLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPT 234 (283)
T ss_dssp CC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCC
T ss_pred chhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHHhccCCCCC
Confidence 0 000000 0011111111 112
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhh
Q 039925 505 IEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 505 ~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
+.+++.++.+++.+||+.+|++||+|.||++.|+.+.+
T Consensus 235 ~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~ 272 (283)
T d1mqba_ 235 PMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIR 272 (283)
T ss_dssp CTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhh
Confidence 24567789999999999999999999999999998765
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.73 E-value=1.4e-16 Score=157.23 Aligned_cols=95 Identities=24% Similarity=0.370 Sum_probs=57.0
Q ss_pred CCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEe
Q 039925 58 YLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIF 137 (549)
Q Consensus 58 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 137 (549)
++++|||++|.++ .+|+. .++|++|+|++|+|+ .+|..+ .+| +.|++++|+++. ++.. .+.|++|++
T Consensus 39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L-~~L~l~~n~l~~-l~~l---p~~L~~L~L 105 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSL-KSLLVDNNNLKA-LSDL---PPLLEYLGV 105 (353)
T ss_dssp TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTC-CEEECCSSCCSC-CCSC---CTTCCEEEC
T ss_pred CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhh-hhhhhhhcccch-hhhh---ccccccccc
Confidence 5666777777766 56643 356677777777776 566543 345 666666666652 2211 134677777
Q ss_pred ecceeeeeCCccccCCCCCCEEecccCcce
Q 039925 138 KENSLEGKFPNTLSNLRSLFYDNINRNEFS 167 (549)
Q Consensus 138 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 167 (549)
++|.+. .+|. ++.+++|++|++++|.+.
T Consensus 106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~ 133 (353)
T d1jl5a_ 106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLK 133 (353)
T ss_dssp CSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred cccccc-cccc-hhhhccceeecccccccc
Confidence 777666 4453 456667777777666554
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=9e-19 Score=166.99 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=61.3
Q ss_pred CccccCceecEEEEEeCCCc----e------------------------------------eEEEeccccCCCceEEEEE
Q 039925 401 NMIGQGSFGSVYKGILGEKW----T------------------------------------AGYSEGTDFKGIDFKAVVF 440 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~~~----~------------------------------------~g~~~~~~~~~~~~~~lv~ 440 (549)
+.||+|+||.||+|.+++.. + +|+|.. +..++||
T Consensus 13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~------~~~~lvm 86 (277)
T d1xbba_ 13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA------ESWMLVM 86 (277)
T ss_dssp EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES------SSEEEEE
T ss_pred CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc------CCEEEEE
Confidence 57999999999999875432 1 577754 4578999
Q ss_pred eecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 441 DYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 441 ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||++|+|.++++... .++|..+++++.|||+||+|||
T Consensus 87 E~~~~g~L~~~l~~~~------~l~~~~~~~i~~qi~~gl~ylH 124 (277)
T d1xbba_ 87 EMAELGPLNKYLQQNR------HVKDKNIIELVHQVSMGMKYLE 124 (277)
T ss_dssp ECCTTEEHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCcHHHHHhhcc------CCCHHHHHHHHHHHHHHHhhHH
Confidence 9999999999998643 6999999999999999999999
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.6e-18 Score=168.14 Aligned_cols=138 Identities=20% Similarity=0.281 Sum_probs=100.6
Q ss_pred CCccccCceecEEEEEeCCCc-----e-----------------------------------eEEEeccccCCCceEEEE
Q 039925 400 SNMIGQGSFGSVYKGILGEKW-----T-----------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 400 ~~~lG~G~~g~Vy~~~~~~~~-----~-----------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
.++||+|+||+||+|++.+.. + +|+|... +...++|
T Consensus 32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~----~~~~~lv 107 (311)
T d1r0pa_ 32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRS----EGSPLVV 107 (311)
T ss_dssp EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEET----TTEEEEE
T ss_pred ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEec----CCceEEE
Confidence 467999999999999985431 1 5777641 4578999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh-----------------------------------
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR----------------------------------- 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH----------------------------------- 484 (549)
||||++|+|.++++... ...+|..+++++.|+|+||.|||
T Consensus 108 ~E~~~~g~l~~~~~~~~-----~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~ 182 (311)
T d1r0pa_ 108 LPYMKHGDLRNFIRNET-----HNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 182 (311)
T ss_dssp EECCTTCBHHHHHHCTT-----CCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTT
T ss_pred EEEeecCchhhhhcccc-----ccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhccc
Confidence 99999999999988654 46788899999999999999999
Q ss_pred ----------------------------------------------c-cccCCc------ceeeeccCcccchHHHHHHH
Q 039925 485 ----------------------------------------------V-KMALPE------KVMEIVESSLLLEIEDCLVS 511 (549)
Q Consensus 485 ----------------------------------------------~-~~~~~~------~~~~~~~~~~~~~~~~~~~~ 511 (549)
. ...+.. ....+.....+..+..++.+
T Consensus 183 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~g~~~~~p~~~~~~ 262 (311)
T d1r0pa_ 183 KEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDP 262 (311)
T ss_dssp TTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHTTCCCCCCTTCCHH
T ss_pred cccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCcccCcHH
Confidence 0 000000 00000000111112345678
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHhhhhhhc
Q 039925 512 VLTIGILCSVESPSERMEKPYIVSKLSHARENVAC 546 (549)
Q Consensus 512 l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~~~~ 546 (549)
+.+++.+||+.+|++||+|.||++.|+.+...+..
T Consensus 263 l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~~~~ 297 (311)
T d1r0pa_ 263 LYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 297 (311)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999876544
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.72 E-value=9.2e-18 Score=151.01 Aligned_cols=129 Identities=22% Similarity=0.267 Sum_probs=113.0
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccC-CcccccccCccceeeecccccccccccccCCCCCCCEEEee
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKI-PANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFK 138 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 138 (549)
++++.++++++ .+|..+. +++++|+|++|+|+..+ +..|..+++| ++|+|++|.+....+..|..+++|++|+|+
T Consensus 11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L-~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls 86 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceE-eeeeccccccccccccccccccccceeeec
Confidence 47889999999 7887664 68999999999998544 4567889999 999999999998889999999999999999
Q ss_pred cceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCccc
Q 039925 139 ENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGN 192 (549)
Q Consensus 139 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~ 192 (549)
+|+++...|..|.++++|++|+|++|+|++..+..|..++ |++|+|++|.+...
T Consensus 87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~ 141 (192)
T d1w8aa_ 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence 9999988888899999999999999999988888888888 99999999888743
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=1.4e-18 Score=168.04 Aligned_cols=145 Identities=20% Similarity=0.267 Sum_probs=107.0
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC------c-e-----------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK------W-T-----------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~------~-~-----------------------------------~g~~~~~~ 429 (549)
...++|...+.||+|+||.||+|++++. . + +|+|..
T Consensus 10 ~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~-- 87 (301)
T d1lufa_ 10 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV-- 87 (301)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS--
T ss_pred CCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeecc--
Confidence 4678899999999999999999987531 1 1 577776
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCC------------------CCCCCCCchhhhHHHHHHHHHHHHHhh-------
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNN------------------KLKPSSLSMIRKLSTTIDVASAIEYLR------- 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~------------------~~~~~~l~~~~~~~ia~~va~gl~yLH------- 484 (549)
....++||||+++|+|.++++.... ......++|..++.|+.|+|+||+|||
T Consensus 88 ---~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHr 164 (301)
T d1lufa_ 88 ---GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHR 164 (301)
T ss_dssp ---SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred ---CCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEee
Confidence 7788999999999999999964320 011345899999999999999999999
Q ss_pred ------------------------------------------------------------------------cc--ccCC
Q 039925 485 ------------------------------------------------------------------------VK--MALP 490 (549)
Q Consensus 485 ------------------------------------------------------------------------~~--~~~~ 490 (549)
.. ..+.
T Consensus 165 DlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~ 244 (301)
T d1lufa_ 165 DLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYY 244 (301)
T ss_dssp CCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred EEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCC
Confidence 00 0000
Q ss_pred c-----ceeeeccCcccchHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhh
Q 039925 491 E-----KVMEIVESSLLLEIEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHAR 541 (549)
Q Consensus 491 ~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~ 541 (549)
+ ....+.+...++.+..++.++.+++.+||+.+|++||||.||++.|+++.
T Consensus 245 ~~~~~e~~~~v~~~~~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~ 300 (301)
T d1lufa_ 245 GMAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMC 300 (301)
T ss_dssp TSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence 0 01111122222223467778999999999999999999999999999875
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.8e-18 Score=164.87 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=68.0
Q ss_pred ccCcCCCccccCceecEEEEEeCCCce---------------------------------eEEEeccccCCCceEEEEEe
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKWT---------------------------------AGYSEGTDFKGIDFKAVVFD 441 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~---------------------------------~g~~~~~~~~~~~~~~lv~e 441 (549)
.+|...+.||+|+||.||+|++.+..+ +|+|.... ......++|||
T Consensus 3 ~~~~l~~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~-~~~~~~~lv~E 81 (303)
T d1vjya_ 3 RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQLWLVSD 81 (303)
T ss_dssp GGEEEEEEEECCSSSEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCC-CcceEEEEEEe
Confidence 456777889999999999999876555 57776521 11236799999
Q ss_pred ecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 442 YMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 442 y~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||++|+|.++|+.. .++|..+++++.|+|+||+|+|
T Consensus 82 y~~~g~L~~~l~~~-------~l~~~~~~~~~~~ia~gl~~lH 117 (303)
T d1vjya_ 82 YHEHGSLFDYLNRY-------TVTVEGMIKLALSTASGLAHLH 117 (303)
T ss_dssp CCTTCBHHHHHHHC-------CBCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999864 4899999999999999999998
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.3e-18 Score=166.40 Aligned_cols=140 Identities=21% Similarity=0.294 Sum_probs=105.1
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCce----------------------------------eEEEeccccCCCceEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKWT----------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~----------------------------------~g~~~~~~~~~~~~~~l 438 (549)
..++|...+.||+|+||.||+|+++++.. +|+|.. +..++
T Consensus 15 ~~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~------~~~~l 88 (285)
T d1fmka3 15 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE------EPIYI 88 (285)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS------SSCEE
T ss_pred CHHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEec------CCeEE
Confidence 45678889999999999999999977643 677753 45789
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh----------------------------------
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR---------------------------------- 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH---------------------------------- 484 (549)
||||+++|+|..++.... ...++|.+++.|+.|||+||+|||
T Consensus 89 v~Ey~~~g~l~~~~~~~~----~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~ 164 (285)
T d1fmka3 89 VTEYMSKGSLLDFLKGET----GKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 164 (285)
T ss_dssp EECCCTTCBHHHHHSHHH----HTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC---
T ss_pred EEEecCCCchhhhhhhcc----cccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhcc
Confidence 999999999999988643 246999999999999999999999
Q ss_pred --------------------------------------------cc-ccC-Cc----ceeeeccCcc-cchHHHHHHHHH
Q 039925 485 --------------------------------------------VK-MAL-PE----KVMEIVESSL-LLEIEDCLVSVL 513 (549)
Q Consensus 485 --------------------------------------------~~-~~~-~~----~~~~~~~~~~-~~~~~~~~~~l~ 513 (549)
.. ... .. .+...+.... .+.+..++.++.
T Consensus 165 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~ 244 (285)
T d1fmka3 165 DNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLH 244 (285)
T ss_dssp -----------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHH
T ss_pred CCCceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccCHHHH
Confidence 00 000 00 0011111111 112256677899
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHhhh
Q 039925 514 TIGILCSVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 514 ~l~~~C~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
+++.+||+.+|++||+|.+|++.|+....
T Consensus 245 ~li~~cl~~dP~~Rps~~~i~~~L~~~~~ 273 (285)
T d1fmka3 245 DLMCQCWRKEPEERPTFEYLQAFLEDYFT 273 (285)
T ss_dssp HHHHHHTCSSGGGSCCHHHHHHHHHTTTS
T ss_pred HHHHHHcccCHhHCcCHHHHHHHHhhhhc
Confidence 99999999999999999999999987653
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.9e-18 Score=167.53 Aligned_cols=87 Identities=18% Similarity=0.238 Sum_probs=69.1
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc-------e------------------------------------eEEEeccc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW-------T------------------------------------AGYSEGTD 429 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-------~------------------------------------~g~~~~~~ 429 (549)
..++|...+.||+|+||.||+|++.+.. + +|+|..
T Consensus 35 ~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~-- 112 (325)
T d1rjba_ 35 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL-- 112 (325)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECS--
T ss_pred CHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEee--
Confidence 4467888899999999999999874321 1 577776
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCC-----------------CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNK-----------------LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~-----------------~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++|||||++|+|.++|+..... .....++|..++.|+.|||+||+|||
T Consensus 113 ---~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH 181 (325)
T d1rjba_ 113 ---SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE 181 (325)
T ss_dssp ---SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999865311 01245899999999999999999999
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.7e-18 Score=162.69 Aligned_cols=141 Identities=19% Similarity=0.239 Sum_probs=105.0
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc-----e-----------------------------------eEEEeccccCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW-----T-----------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-----~-----------------------------------~g~~~~~~~~~ 432 (549)
..++|...+.||+|+||.||+|++.... + +|++.
T Consensus 5 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~------ 78 (273)
T d1mp8a_ 5 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT------ 78 (273)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC------
T ss_pred CHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe------
Confidence 3467888899999999999999975321 1 56664
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh----------------------------
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR---------------------------- 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH---------------------------- 484 (549)
.+..++||||+++|++.+++.... ..+++..++.++.|||+||+|||
T Consensus 79 ~~~~~iv~E~~~~g~l~~~~~~~~-----~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG 153 (273)
T d1mp8a_ 79 ENPVWIIMELCTLGELRSFLQVRK-----YSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFG 153 (273)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHTT-----TTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC--
T ss_pred cCeEEEEEEeccCCcHHhhhhccC-----CCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccch
Confidence 356899999999999999877543 46899999999999999999999
Q ss_pred --------------------------------------------------ccccCCc---c----eeeeccCcccchHHH
Q 039925 485 --------------------------------------------------VKMALPE---K----VMEIVESSLLLEIED 507 (549)
Q Consensus 485 --------------------------------------------------~~~~~~~---~----~~~~~~~~~~~~~~~ 507 (549)
.....|. . ...+......+.+..
T Consensus 154 ~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~ 233 (273)
T d1mp8a_ 154 LSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 233 (273)
T ss_dssp -----------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTT
T ss_pred hheeccCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCC
Confidence 0000000 0 001111111122356
Q ss_pred HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhhh
Q 039925 508 CLVSVLTIGILCSVESPSERMEKPYIVSKLSHARENV 544 (549)
Q Consensus 508 ~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~~ 544 (549)
++.++.+++.+||+.+|++||||.||++.|+.+.++-
T Consensus 234 ~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~~ 270 (273)
T d1mp8a_ 234 CPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE 270 (273)
T ss_dssp CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence 7788999999999999999999999999999887653
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=1.2e-16 Score=145.76 Aligned_cols=75 Identities=28% Similarity=0.391 Sum_probs=50.4
Q ss_pred cccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCC
Q 039925 224 TATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNL 303 (549)
Q Consensus 224 ~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 303 (549)
.++.+++++|.+++ +..+..+ ++|+.+++++|++++ + + .+.++++|++|+|++|+++ .++ .+.++++|
T Consensus 135 ~l~~l~~~~n~l~~--~~~~~~l--~~L~~l~l~~n~l~~-i----~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L 202 (210)
T d1h6ta2 135 QLESLYLGNNKITD--ITVLSRL--TKLDTLSLEDNQISD-I----V-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNL 202 (210)
T ss_dssp TCCEEECCSSCCCC--CGGGGGC--TTCSEEECCSSCCCC-C----G-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTC
T ss_pred cccccccccccccc--ccccccc--ccccccccccccccc-c----c-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCC
Confidence 44555555555543 2234455 778888888887763 2 2 3677888888888888887 454 57888888
Q ss_pred CEEEccC
Q 039925 304 MELSVSR 310 (549)
Q Consensus 304 ~~L~Ls~ 310 (549)
++|+|++
T Consensus 203 ~~L~Ls~ 209 (210)
T d1h6ta2 203 DVLELFS 209 (210)
T ss_dssp SEEEEEE
T ss_pred CEEEccC
Confidence 8888764
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=6e-18 Score=164.28 Aligned_cols=146 Identities=17% Similarity=0.177 Sum_probs=106.0
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc-------e------------------------------------eEEEeccc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW-------T------------------------------------AGYSEGTD 429 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-------~------------------------------------~g~~~~~~ 429 (549)
..++|...+.||+|+||.||+|++.... + +|+|..
T Consensus 21 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~-- 98 (311)
T d1t46a_ 21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTI-- 98 (311)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS--
T ss_pred CHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEee--
Confidence 4578888899999999999999874311 1 677777
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCC------------CCCCCCchhhhHHHHHHHHHHHHHhh-------------
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNK------------LKPSSLSMIRKLSTTIDVASAIEYLR------------- 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~------------~~~~~l~~~~~~~ia~~va~gl~yLH------------- 484 (549)
.+..++|||||++|+|.++++..... .....+++..+.+++.|||+||+|||
T Consensus 99 ---~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~N 175 (311)
T d1t46a_ 99 ---GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARN 175 (311)
T ss_dssp ---SSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred ---CCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeeccccccc
Confidence 77899999999999999999754310 12236899999999999999999999
Q ss_pred ------------------------------------------------------------------c-cccCC------c
Q 039925 485 ------------------------------------------------------------------V-KMALP------E 491 (549)
Q Consensus 485 ------------------------------------------------------------------~-~~~~~------~ 491 (549)
. ..... +
T Consensus 176 Il~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~ 255 (311)
T d1t46a_ 176 ILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDS 255 (311)
T ss_dssp EEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSH
T ss_pred ccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHH
Confidence 0 00000 0
Q ss_pred ceeeeccCcccc-hHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhhh
Q 039925 492 KVMEIVESSLLL-EIEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHAREN 543 (549)
Q Consensus 492 ~~~~~~~~~~~~-~~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~~ 543 (549)
.+.++++.+... .+..++.++.+++.+||+.+|++||+|.||++.|+++..+
T Consensus 256 ~~~~~i~~~~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i~~ 308 (311)
T d1t46a_ 256 KFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE 308 (311)
T ss_dssp HHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhhcc
Confidence 111222221111 1234567889999999999999999999999999876554
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.1e-18 Score=167.20 Aligned_cols=146 Identities=20% Similarity=0.286 Sum_probs=106.7
Q ss_pred cccccCcCCCccccCceecEEEEEeCCC-------ce-----------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILGEK-------WT-----------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~-------~~-----------------------------------~g~~~~~~ 429 (549)
...++|...+.||+|+||.||+|++.+. .+ +|+|..
T Consensus 17 i~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~-- 94 (308)
T d1p4oa_ 17 VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ-- 94 (308)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS--
T ss_pred ecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEec--
Confidence 3457888889999999999999987421 11 677776
Q ss_pred cCCCceEEEEEeecCCCCcccccccCC----CCCCCCCCchhhhHHHHHHHHHHHHHhh---------------------
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSN----NKLKPSSLSMIRKLSTTIDVASAIEYLR--------------------- 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~----~~~~~~~l~~~~~~~ia~~va~gl~yLH--------------------- 484 (549)
++..++|||||++|+|.++++... .......++|..+.+++.|+|+||.|||
T Consensus 95 ---~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~ 171 (308)
T d1p4oa_ 95 ---GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFT 171 (308)
T ss_dssp ---SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCC
T ss_pred ---CCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCce
Confidence 778999999999999999987432 0012245789999999999999999999
Q ss_pred ----------------------------------------------------------cc--ccCCc-----ceeeeccC
Q 039925 485 ----------------------------------------------------------VK--MALPE-----KVMEIVES 499 (549)
Q Consensus 485 ----------------------------------------------------------~~--~~~~~-----~~~~~~~~ 499 (549)
.. ..+.+ ....+.+.
T Consensus 172 ~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~~ 251 (308)
T d1p4oa_ 172 VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG 251 (308)
T ss_dssp EEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTT
T ss_pred EEEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhC
Confidence 00 00110 01112222
Q ss_pred cccchHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhh
Q 039925 500 SLLLEIEDCLVSVLTIGILCSVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 500 ~~~~~~~~~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
...+.+..++.++.+++.+||+.+|++||||.||++.|++..+
T Consensus 252 ~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~ 294 (308)
T d1p4oa_ 252 GLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME 294 (308)
T ss_dssp CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred CCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence 2222235666789999999999999999999999999987643
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=9.5e-18 Score=161.90 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=65.2
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc---------e------------------------------------eEEEec
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW---------T------------------------------------AGYSEG 427 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~---------~------------------------------------~g~~~~ 427 (549)
..++|...+.||+|+||.||+|+..+.. + +|+|..
T Consensus 11 ~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~ 90 (299)
T d1fgka_ 11 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ 90 (299)
T ss_dssp CGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred cHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEeccccccc
Confidence 4567888899999999999999863221 1 677877
Q ss_pred cccCCCceEEEEEeecCCCCcccccccCCC----------CCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 428 TDFKGIDFKAVVFDYMQNRSLEDWPYQSNN----------KLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 428 ~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~----------~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++..++|||||++|+|.++|+.... ......++|.+++.++.|+|.||+|||
T Consensus 91 -----~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH 152 (299)
T d1fgka_ 91 -----DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA 152 (299)
T ss_dssp -----SSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhh
Confidence 7789999999999999999975531 012356899999999999999999999
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=3.2e-16 Score=144.84 Aligned_cols=190 Identities=18% Similarity=0.260 Sum_probs=153.0
Q ss_pred cccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCC
Q 039925 52 HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSA 131 (549)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~ 131 (549)
.+..+.+|+.|++.+|+|+ .++ .+..+++|++|++++|.+++. + .+..++++ +++++++|.++. + ..+.++++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~-~-~l~~l~~l-~~l~~~~n~~~~-i-~~l~~l~~ 108 (227)
T d1h6ua2 36 TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-A-PLKNLTKI-TELELSGNPLKN-V-SAIAGLQS 108 (227)
T ss_dssp CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCCSC-CEEECCSCCCSC-C-GGGTTCTT
T ss_pred CHHHcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeecc-c-cccccccc-cccccccccccc-c-cccccccc
Confidence 3456789999999999999 564 589999999999999999853 3 38899999 999999999874 3 35788999
Q ss_pred CCEEEeecceeeeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeec
Q 039925 132 IQVMIFKENSLEGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYIL 210 (549)
Q Consensus 132 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~ 210 (549)
|+.++++++...+ ...+...+.++.+.++.+.+.... .+...+ |++|++++|.+....+ +. .+
T Consensus 109 L~~l~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~--l~-~l--------- 172 (227)
T d1h6ua2 109 IKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LA-NL--------- 172 (227)
T ss_dssp CCEEECTTSCCCC--CGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GT-TC---------
T ss_pred ccccccccccccc--cchhccccchhhhhchhhhhchhh--hhccccccccccccccccccchh--hc-cc---------
Confidence 9999999998873 334777899999999999887432 366677 9999999999873222 32 22
Q ss_pred ccccccccccCcccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccC
Q 039925 211 LLAQKLYWSDVSTTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDN 286 (549)
Q Consensus 211 ~~~~~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~ 286 (549)
++|+.|++++|++++. + .+..+ ++|++|+|++|++++ + + .++++++|++|++++
T Consensus 173 ------------~~L~~L~Ls~n~l~~l-~-~l~~l--~~L~~L~Ls~N~lt~-i----~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 173 ------------SKLTTLKADDNKISDI-S-PLASL--PNLIEVHLKNNQISD-V----S-PLANTSNLFIVTLTN 226 (227)
T ss_dssp ------------TTCCEEECCSSCCCCC-G-GGGGC--TTCCEEECTTSCCCB-C----G-GGTTCTTCCEEEEEE
T ss_pred ------------ccceecccCCCccCCC-h-hhcCC--CCCCEEECcCCcCCC-C----c-ccccCCCCCEEEeeC
Confidence 3788899999998853 3 47888 999999999999983 3 2 388999999999974
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.1e-17 Score=161.55 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=66.7
Q ss_pred ccccCcCCCccccCceecEEEEEeCCCc-------e------------------------------------eEEEeccc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEKW-------T------------------------------------AGYSEGTD 429 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~-------~------------------------------------~g~~~~~~ 429 (549)
..++|...+.||+|+||.||+|++.+.. + .+++..
T Consensus 11 ~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~-- 88 (299)
T d1ywna1 11 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK-- 88 (299)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS--
T ss_pred cHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeecc--
Confidence 4567888999999999999999874321 1 344443
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCC----------CCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNK----------LKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~----------~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....++|||||++|+|.++++..... .....++|.+++.++.|||+||+|||
T Consensus 89 --~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH 151 (299)
T d1ywna1 89 --PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA 151 (299)
T ss_dssp --TTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 145689999999999999999754310 01245899999999999999999999
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=4e-16 Score=140.97 Aligned_cols=71 Identities=28% Similarity=0.421 Sum_probs=44.8
Q ss_pred cccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccccCCccccCCCCC
Q 039925 224 TATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQGNLPSSLGYYQNL 303 (549)
Q Consensus 224 ~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 303 (549)
+|+.|++++|.+.. + ..+..+ ++|+.|++.+|++++ + ..++++++|++|++++|++++ ++ .+.++++|
T Consensus 129 ~L~~L~l~~n~l~~-~-~~l~~~--~~L~~L~l~~n~l~~-l-----~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L 196 (199)
T d2omxa2 129 NLNRLELSSNTISD-I-SALSGL--TSLQQLNFSSNQVTD-L-----KPLANLTTLERLDISSNKVSD-IS-VLAKLTNL 196 (199)
T ss_dssp TCSEEECCSSCCCC-C-GGGTTC--TTCSEEECCSSCCCC-C-----GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTC
T ss_pred hhHHhhhhhhhhcc-c-cccccc--ccccccccccccccC-C-----ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCC
Confidence 45555555555542 1 235555 777777777777763 2 236777888888888888773 43 46777777
Q ss_pred CEE
Q 039925 304 MEL 306 (549)
Q Consensus 304 ~~L 306 (549)
+.|
T Consensus 197 ~~L 199 (199)
T d2omxa2 197 ESL 199 (199)
T ss_dssp SEE
T ss_pred CcC
Confidence 765
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.1e-17 Score=158.98 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=63.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCCC--c---e-------------------------------------eEEEecccc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGEK--W---T-------------------------------------AGYSEGTDF 430 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~--~---~-------------------------------------~g~~~~~~~ 430 (549)
..++|...+.||+|+||.||+|++... . + +|+|.+
T Consensus 6 ~~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~--- 82 (273)
T d1u46a_ 6 GEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT--- 82 (273)
T ss_dssp CGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS---
T ss_pred chHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee---
Confidence 356788888999999999999986422 1 1 577754
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++||||+++|++.+++.... ..++|..+++++.|+|+||.|||
T Consensus 83 ---~~~~lv~e~~~~~~l~~~~~~~~-----~~l~~~~~~~~~~qi~~gl~ylH 128 (273)
T d1u46a_ 83 ---PPMKMVTELAPLGSLLDRLRKHQ-----GHFLLGTLSRYAVQVAEGMGYLE 128 (273)
T ss_dssp ---SSCEEEEECCTTCBHHHHHHHHG-----GGSCHHHHHHHHHHHHHHHHHHH
T ss_pred ---cchheeeeeecCcchhhhhhccc-----CCCCHHHHHHHHHHHHHHHHHhh
Confidence 45689999999999999887654 46999999999999999999999
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=3.3e-17 Score=159.40 Aligned_cols=137 Identities=20% Similarity=0.315 Sum_probs=102.6
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cc-----e-----------------------------------eEEEeccccCCC
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KW-----T-----------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~-----~-----------------------------------~g~~~~~~~~~~ 433 (549)
++|...++||+|+||.||+|++.. +. + +|+|..
T Consensus 9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~------ 82 (317)
T d1xkka_ 9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT------ 82 (317)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEES------
T ss_pred HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec------
Confidence 579999999999999999998743 22 1 677765
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh-----------------------------
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR----------------------------- 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH----------------------------- 484 (549)
+..++++||+++|+|.+++.... ..++|..+++++.|||+||+|||
T Consensus 83 ~~~~~v~e~~~~~~l~~~~~~~~-----~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGl 157 (317)
T d1xkka_ 83 STVQLITQLMPFGCLLDYVREHK-----DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGL 157 (317)
T ss_dssp SSEEEEEECCTTCBHHHHHHHTS-----SSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSH
T ss_pred CCeeEEEEeccCCcccccccccc-----cCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeecccc
Confidence 45688999999999999988654 57899999999999999999999
Q ss_pred --------------------------------------------------ccccCC--c----ceeeeccCcc-cchHHH
Q 039925 485 --------------------------------------------------VKMALP--E----KVMEIVESSL-LLEIED 507 (549)
Q Consensus 485 --------------------------------------------------~~~~~~--~----~~~~~~~~~~-~~~~~~ 507 (549)
.....+ + .+...+..+. ++.+..
T Consensus 158 a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~p~~ 237 (317)
T d1xkka_ 158 AKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 237 (317)
T ss_dssp HHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHHTCCCCCCTT
T ss_pred ceecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCcc
Confidence 000000 0 1111111111 122246
Q ss_pred HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhhh
Q 039925 508 CLVSVLTIGILCSVESPSERMEKPYIVSKLSHARE 542 (549)
Q Consensus 508 ~~~~l~~l~~~C~~~~P~~RP~~~~v~~~L~~~~~ 542 (549)
++.++.+++.+||+.+|++||||.||++.|+.+..
T Consensus 238 ~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~ 272 (317)
T d1xkka_ 238 CTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 272 (317)
T ss_dssp BCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHHh
Confidence 77889999999999999999999999999988754
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.62 E-value=1.7e-15 Score=137.94 Aligned_cols=179 Identities=22% Similarity=0.353 Sum_probs=119.8
Q ss_pred EccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeeccee
Q 039925 63 NLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSL 142 (549)
Q Consensus 63 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 142 (549)
++..+.+++.++. ..+.+|++|++++|.++. ++ ++..+++| ++|++++|++++.. .++.+++|++|++++|++
T Consensus 30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~-l~-~l~~l~~L-~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i 102 (210)
T d1h6ta2 30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS-VQ-GIQYLPNV-TKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV 102 (210)
T ss_dssp HTTCSCTTSEECH--HHHHTCCEEECTTSCCCC-CT-TGGGCTTC-CEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred HhCcCccCCccCH--HHhcCccEEECcCCCCCC-ch-hHhhCCCC-CEEeCCCccccCcc--ccccCccccccccccccc
Confidence 4445555543332 245667777777777763 33 36677777 77777777776533 256777777788777777
Q ss_pred eeeCCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccC
Q 039925 143 EGKFPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDV 221 (549)
Q Consensus 143 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~ 221 (549)
+ .+| .+..+++|+.|++++|.+.. + ..+..++ ++.+++++|.+++ .+ .+. .+
T Consensus 103 ~-~l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~-~~-~~~-~l-------------------- 155 (210)
T d1h6ta2 103 K-DLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-IT-VLS-RL-------------------- 155 (210)
T ss_dssp C-CGG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-CG-GGG-GC--------------------
T ss_pred c-ccc-cccccccccccccccccccc-c-ccccccccccccccccccccc-cc-ccc-cc--------------------
Confidence 6 344 47777788888888777652 2 3466666 7888888877763 22 121 22
Q ss_pred cccccEEEccccccccccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccC
Q 039925 222 STTATIIAMGGNQISGTITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDN 286 (549)
Q Consensus 222 ~~~L~~L~l~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~ 286 (549)
++|+.+++++|++++.. .+..+ ++|+.|++++|+++ .+ + .+.++++|++|+|++
T Consensus 156 -~~L~~l~l~~n~l~~i~--~l~~l--~~L~~L~Ls~N~i~-~l----~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 156 -TKLDTLSLEDNQISDIV--PLAGL--TKLQNLYLSKNHIS-DL----R-ALAGLKNLDVLELFS 209 (210)
T ss_dssp -TTCSEEECCSSCCCCCG--GGTTC--TTCCEEECCSSCCC-BC----G-GGTTCTTCSEEEEEE
T ss_pred -ccccccccccccccccc--cccCC--CCCCEEECCCCCCC-CC----h-hhcCCCCCCEEEccC
Confidence 36777888888887532 37777 89999999999887 33 3 478889999998864
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.62 E-value=1.5e-14 Score=142.20 Aligned_cols=82 Identities=24% Similarity=0.264 Sum_probs=66.0
Q ss_pred ecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccC
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIG 127 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~ 127 (549)
.+|+. .++|++|+|++|+|+ .+|+.+ .+|+.|++++|+++ .+++. .+.| ++|++++|.+.. +|. ++
T Consensus 52 ~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L-~~L~L~~n~l~~-lp~-~~ 117 (353)
T d1jl5a_ 52 SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLL-EYLGVSNNQLEK-LPE-LQ 117 (353)
T ss_dssp CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTC-CEEECCSSCCSS-CCC-CT
T ss_pred CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---cccc-cccccccccccc-ccc-hh
Confidence 67754 468999999999999 788754 57899999999988 55531 1346 999999999984 453 67
Q ss_pred CCCCCCEEEeecceee
Q 039925 128 NPSAIQVMIFKENSLE 143 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~ 143 (549)
.+++|++|++++|.+.
T Consensus 118 ~l~~L~~L~l~~~~~~ 133 (353)
T d1jl5a_ 118 NSSFLKIIDVDNNSLK 133 (353)
T ss_dssp TCTTCCEEECCSSCCS
T ss_pred hhccceeecccccccc
Confidence 8999999999999886
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.2e-16 Score=150.74 Aligned_cols=80 Identities=19% Similarity=0.322 Sum_probs=69.6
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCc
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~ 434 (549)
-++|...+.||+|+||.||+|+... +.. ++++.+ ++
T Consensus 5 l~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~ 79 (263)
T d2j4za1 5 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHD-----AT 79 (263)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SS
T ss_pred hhHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEE-----CC
Confidence 3678889999999999999999864 332 577776 78
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++.... .+++.....++.|+++||+|||
T Consensus 80 ~~~ivmEy~~~g~L~~~l~~~~------~l~e~~~~~i~~qi~~al~~lH 123 (263)
T d2j4za1 80 RVYLILEYAPLGTVYRELQKLS------KFDEQRTATYITELANALSYCH 123 (263)
T ss_dssp EEEEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCCCcHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998654 6899999999999999999999
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.4e-16 Score=148.14 Aligned_cols=79 Identities=13% Similarity=0.199 Sum_probs=68.3
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
++|...+.||+|+||+||+|+... +.. ++++.. ++..+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~-----~~~~~ 79 (271)
T d1nvra_ 5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-----GNIQY 79 (271)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEEE
T ss_pred cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeecc-----CceeE
Confidence 578888999999999999999753 332 566666 77899
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.++++.. ..+++.....++.|+++||+|||
T Consensus 80 ivmEy~~gg~L~~~l~~~------~~l~e~~~~~i~~qi~~al~ylH 120 (271)
T d1nvra_ 80 LFLEYCSGGELFDRIEPD------IGMPEPDAQRFFHQLMAGVVYLH 120 (271)
T ss_dssp EEEECCTTEEGGGGSBTT------TBCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccCCCcHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999754 36899999999999999999999
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.59 E-value=1.1e-14 Score=131.34 Aligned_cols=161 Identities=20% Similarity=0.271 Sum_probs=86.3
Q ss_pred CCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCE
Q 039925 79 RLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFY 158 (549)
Q Consensus 79 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 158 (549)
.+.+|++|++++|.++ .+ +++..+++| ++|++++|++++..+ ++++++|++|++++|.+. .++ .+.++++|++
T Consensus 38 ~l~~l~~L~l~~~~i~-~l-~~l~~l~nL-~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~ 110 (199)
T d2omxa2 38 DLDQVTTLQADRLGIK-SI-DGVEYLNNL-TQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTG 110 (199)
T ss_dssp HHTTCCEEECTTSCCC-CC-TTGGGCTTC-CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSE
T ss_pred HhcCCCEEECCCCCCC-Cc-cccccCCCc-CcCccccccccCccc--ccCCcccccccccccccc-ccc-cccccccccc
Confidence 3445555555555555 22 234555555 555555555553322 555555555555555554 222 2555556666
Q ss_pred EecccCcceecccccccccc-cceeeCCCCcCcccCchhhhhcCCCCcEeeecccccccccccCcccccEEEcccccccc
Q 039925 159 DNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPLEIGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISG 237 (549)
Q Consensus 159 L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~ 237 (549)
|++++|.+... ..+..++ |+.|++++|++. .++ .+. . .++|+.|++.+|++++
T Consensus 111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~-~---------------------~~~L~~L~l~~n~l~~ 164 (199)
T d2omxa2 111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALS-G---------------------LTSLQQLNFSSNQVTD 164 (199)
T ss_dssp EECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGT-T---------------------CTTCSEEECCSSCCCC
T ss_pred ccccccccccc--cccchhhhhHHhhhhhhhhc-ccc-ccc-c---------------------cccccccccccccccC
Confidence 66655555422 2344555 666666666554 222 121 1 1256666666666664
Q ss_pred ccChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCee
Q 039925 238 TITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYL 282 (549)
Q Consensus 238 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L 282 (549)
. ..+.++ ++|+.|++++|++++ + + .+..+++|++|
T Consensus 165 l--~~l~~l--~~L~~L~ls~N~i~~-i----~-~l~~L~~L~~L 199 (199)
T d2omxa2 165 L--KPLANL--TTLERLDISSNKVSD-I----S-VLAKLTNLESL 199 (199)
T ss_dssp C--GGGTTC--TTCCEEECCSSCCCC-C----G-GGGGCTTCSEE
T ss_pred C--ccccCC--CCCCEEECCCCCCCC-C----c-cccCCCCCCcC
Confidence 3 236666 788888888887763 3 2 36667777665
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=8.8e-17 Score=152.26 Aligned_cols=85 Identities=14% Similarity=0.082 Sum_probs=66.4
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~ 436 (549)
++|...+.||+|+||.||+|+... +.. ++++.+.. ....
T Consensus 4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~---~~~~ 80 (269)
T d2java1 4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRT---NTTL 80 (269)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC-------CE
T ss_pred hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCC---CCEE
Confidence 689999999999999999999753 432 45554311 3567
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+++|+|.+++.... .....+++.....++.|+++||.|||
T Consensus 81 ~ivmEy~~~g~L~~~i~~~~--~~~~~l~e~~~~~i~~qi~~al~ylH 126 (269)
T d2java1 81 YIVMEYCEGGDLASVITKGT--KERQYLDEEFVLRVMTQLTLALKECH 126 (269)
T ss_dssp EEEEECCTTEEHHHHHHHHH--HHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCcHHHHHHhcc--ccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987432 01346899999999999999999998
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=6.1e-16 Score=147.84 Aligned_cols=82 Identities=15% Similarity=0.168 Sum_probs=69.4
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCceE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
..+.|...+.||+|+||.||+|+... +.. ++++.. ++..
T Consensus 10 p~d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----~~~~ 84 (288)
T d2jfla1 10 PEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYY-----ENNL 84 (288)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEE-----TTEE
T ss_pred cccCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee-----CCeE
Confidence 34567888899999999999999754 332 577776 7889
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|||||++|+|.+++.... ..+++.++..++.|+++||+|||
T Consensus 85 ~lvmEy~~~g~L~~~~~~~~-----~~l~e~~~~~i~~qi~~gL~ylH 127 (288)
T d2jfla1 85 WILIEFCAGGAVDAVMLELE-----RPLTESQIQVVCKQTLDALNYLH 127 (288)
T ss_dssp EEEEECCTTEEHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987543 46899999999999999999999
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2e-15 Score=130.99 Aligned_cols=127 Identities=13% Similarity=0.034 Sum_probs=60.3
Q ss_pred cCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCC
Q 039925 78 GRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLF 157 (549)
Q Consensus 78 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 157 (549)
.+..+|++|+|++|+|+ .++..+..+++| ++|+|++|.|+.. +.|..+++|++|++++|+++...+..+..+++|+
T Consensus 15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L-~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIP-VIENLGATLDQF-DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCGGGGTTCC-SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCcCcCcEEECCCCCCC-ccCccccccccC-CEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence 34444455555555544 334333444444 5555555554422 2244455555555555555533333334455555
Q ss_pred EEecccCcceeccc-ccccccc-cceeeCCCCcCcccCch---hhhhcCCCCcEeee
Q 039925 158 YDNINRNEFSGLIP-SFIFNIS-LKWNFLPENSFTGNLPL---EIGVTLPKGRNYYI 209 (549)
Q Consensus 158 ~L~L~~n~l~~~~p-~~~~~l~-L~~L~l~~n~l~~~~p~---~~~~~l~~L~~L~l 209 (549)
+|++++|++..... ..+..++ |++|++++|+++ ..|. .+...+|+|+.|+.
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred cceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence 55555555542211 2344455 555555555554 3332 12225666666653
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1e-15 Score=147.01 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=69.3
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------------eEEEecccc
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------------AGYSEGTDF 430 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------------~g~~~~~~~ 430 (549)
..+.|...+.||+|+||+||+|+... +.. ++++.+
T Consensus 8 i~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~--- 84 (293)
T d1jksa_ 8 VDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYEN--- 84 (293)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---
T ss_pred cccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE---
Confidence 34568888999999999999999753 332 566766
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++|||||++|+|.+++...+ .+++.....++.|++.||+|||
T Consensus 85 --~~~~~iv~E~~~gg~L~~~i~~~~------~l~~~~~~~~~~qi~~al~yLH 130 (293)
T d1jksa_ 85 --KTDVILILELVAGGELFDFLAEKE------SLTEEEATEFLKQILNGVYYLH 130 (293)
T ss_dssp --SSEEEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEEEcCCCccccchhcccc------ccchhHHHHHHHHHHHHHHhhh
Confidence 788999999999999999998653 6899999999999999999999
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=1.5e-15 Score=146.36 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=68.2
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCceE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~~ 436 (549)
.+.|...+.||+|+||.||+|+... +.. ++++.. .+..
T Consensus 8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~-----~~~~ 82 (307)
T d1a06a_ 8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYES-----GGHL 82 (307)
T ss_dssp GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEEC-----SSEE
T ss_pred ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----CCEE
Confidence 4557888999999999999999753 332 466665 7789
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|||||++|+|.+++.... .+++.....++.|++.||+|||
T Consensus 83 ~lvmE~~~gg~L~~~l~~~~------~l~e~~~~~~~~qi~~al~ylH 124 (307)
T d1a06a_ 83 YLIMQLVSGGELFDRIVEKG------FYTERDASRLIFQVLDAVKYLH 124 (307)
T ss_dssp EEEECCCCSCBHHHHHHTCS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCcHHHhhhccc------CCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999998643 6999999999999999999999
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=1.7e-14 Score=118.96 Aligned_cols=102 Identities=19% Similarity=0.254 Sum_probs=71.7
Q ss_pred CEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeec
Q 039925 60 RFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKE 139 (549)
Q Consensus 60 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (549)
|+|+|++|+++ .++ .+..+++|++|++++|+|+ .+|+.+..+++| +.|++++|.|+.. | .+..+++|++|++++
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L-~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~ 74 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCL-EVLQASDNALENV-D-GVANLPRLQELLLCN 74 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTC-CEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcc-ccccccccccccc-C-ccccccccCeEECCC
Confidence 56788888887 555 3777788888888888887 577777777777 7788887777643 3 367777777777777
Q ss_pred ceeeeeC-CccccCCCCCCEEecccCcce
Q 039925 140 NSLEGKF-PNTLSNLRSLFYDNINRNEFS 167 (549)
Q Consensus 140 n~l~~~~-p~~~~~l~~L~~L~L~~n~l~ 167 (549)
|+++... ...+..+++|++|++++|.+.
T Consensus 75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 7776322 135666677777777777665
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.1e-14 Score=126.29 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=108.6
Q ss_pred cccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCC
Q 039925 52 HVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSA 131 (549)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~ 131 (549)
.|.++.++++|+|++|+|+ .++..+..+++|++|+|++|.|+ .++ .+..+++| ++|++++|+++...+..+..+++
T Consensus 13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L-~~L~ls~N~i~~l~~~~~~~l~~ 88 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRL-KTLLVNNNRICRIGEGLDQALPD 88 (162)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSC-CEEECCSSCCCEECSCHHHHCTT
T ss_pred hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcch-hhhhcccccccCCCccccccccc
Confidence 4678889999999999999 67877788999999999999999 554 58899999 99999999999777777788999
Q ss_pred CCEEEeecceeeeeCC--ccccCCCCCCEEecccCcceeccc----ccccccc-cceeeC
Q 039925 132 IQVMIFKENSLEGKFP--NTLSNLRSLFYDNINRNEFSGLIP----SFIFNIS-LKWNFL 184 (549)
Q Consensus 132 L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-L~~L~l 184 (549)
|++|++++|+++ .++ ..+..+++|++|++++|.++. .| ..+..++ |++||.
T Consensus 89 L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 89 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETT
T ss_pred cccceecccccc-ccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCC
Confidence 999999999998 344 468889999999999999874 33 3567778 998873
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.53 E-value=1.3e-15 Score=144.63 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=67.8
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce---------------------------------------------eEEEecc
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT---------------------------------------------AGYSEGT 428 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------------------~g~~~~~ 428 (549)
++|...+.||+|+||+||+|+... +.. ++++.+
T Consensus 3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~- 81 (277)
T d1phka_ 3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET- 81 (277)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC-
T ss_pred ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc-
Confidence 578888999999999999998743 332 455555
Q ss_pred ccCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 429 DFKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 429 ~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++..++|||||++|+|.++|+... .+++.+...++.||++||+|||
T Consensus 82 ----~~~~~ivmE~~~~g~L~~~l~~~~------~l~e~~~~~~~~qi~~al~~lH 127 (277)
T d1phka_ 82 ----NTFFFLVFDLMKKGELFDYLTEKV------TLSEKETRKIMRALLEVICALH 127 (277)
T ss_dssp ----SSEEEEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CcceEEEEEcCCCchHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999998643 6899999999999999999999
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.7e-15 Score=143.42 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=67.6
Q ss_pred cccCcCCCccccCceecEEEEEeC-CCce-----------------------------------eEEEeccccCCCceEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILG-EKWT-----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
.+.|...+.||+|+||.||+|+.. ++.. ++++.. .+..+
T Consensus 19 ~~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-----~~~~~ 93 (293)
T d1yhwa1 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-----GDELW 93 (293)
T ss_dssp TTTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTEEE
T ss_pred ccccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEE-----CCEEE
Confidence 457999999999999999999964 3332 566666 77899
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+||||+++|+|.+++... .+++.+...++.|++.||+|||
T Consensus 94 ivmEy~~gg~L~~~~~~~-------~l~~~~~~~i~~qi~~aL~yLH 133 (293)
T d1yhwa1 94 VVMEYLAGGSLTDVVTET-------CMDEGQIAAVCRECLQALEFLH 133 (293)
T ss_dssp EEEECCTTCBHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCcHHHHhhcc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988753 4889999999999999999999
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.1e-15 Score=142.55 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=63.4
Q ss_pred cCCCccccCceecEEEEEeCCCce--------------------------------------eEEEeccccCCCceEEEE
Q 039925 398 SSSNMIGQGSFGSVYKGILGEKWT--------------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 398 ~~~~~lG~G~~g~Vy~~~~~~~~~--------------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
...+.||+|+||+||+|+...... ++++... ..++...++|
T Consensus 12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~-~~~~~~~~iv 90 (270)
T d1t4ha_ 12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCIVLV 90 (270)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEE-SSSCEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeec-cccCCEEEEE
Confidence 445679999999999999864322 4554321 1224568999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|+|.++++... .+++.....++.||++||+|||
T Consensus 91 mE~~~~g~L~~~l~~~~------~~~~~~~~~~~~qi~~gl~yLH 129 (270)
T d1t4ha_ 91 TELMTSGTLKTYLKRFK------VMKIKVLRSWCRQILKGLQFLH 129 (270)
T ss_dssp EECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCcHHHHHhccc------cccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998653 6899999999999999999999
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.2e-15 Score=145.13 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=69.7
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce----------------------------------eEEEeccccCCCceEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT----------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~----------------------------------~g~~~~~~~~~~~~~~ 437 (549)
..+.|...+.||+|+||+||+|.... +.. ++++.+ .+..+
T Consensus 3 ~~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-----~~~~~ 77 (321)
T d1tkia_ 3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFES-----MEELV 77 (321)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEE-----TTEEE
T ss_pred CccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEE-----CCEEE
Confidence 34678888999999999999999764 332 566666 78899
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+|||||++|+|.++++... ..+++.+...++.|+++||+|||
T Consensus 78 lvmE~~~gg~L~~~i~~~~-----~~l~e~~~~~i~~qi~~al~yLH 119 (321)
T d1tkia_ 78 MIFEFISGLDIFERINTSA-----FELNEREIVSYVHQVCEALQFLH 119 (321)
T ss_dssp EEECCCCCCBHHHHHTSSS-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998643 46899999999999999999999
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=99.52 E-value=2.2e-15 Score=147.85 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=70.0
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------eEEEeccccCCCceE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
..++|...+.||+|+||.||+|+... +.. ++++.+ .+..
T Consensus 24 il~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-----~~~~ 98 (350)
T d1koaa2 24 VLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFED-----DNEM 98 (350)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEE-----TTEE
T ss_pred CccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----CCEE
Confidence 34678889999999999999999753 332 566776 7889
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|||||++|+|.+++.... ..+++.....|+.||+.||+|||
T Consensus 99 ~ivmE~~~gg~L~~~l~~~~-----~~l~e~~~~~i~~qi~~aL~ylH 141 (350)
T d1koaa2 99 VMIYEFMSGGELFEKVADEH-----NKMSEDEAVEYMRQVCKGLCHMH 141 (350)
T ss_dssp EEEECCCCSCBHHHHHTCTT-----SCBCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997543 46999999999999999999999
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.51 E-value=7.7e-16 Score=151.66 Aligned_cols=247 Identities=16% Similarity=0.170 Sum_probs=164.6
Q ss_pred ecCccccCCCCCCEEEccCCcceec----CCccccCCCCCCEeecccccccc---cCC-------cccccccCccceeee
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGE----IPEKVGRLFRLEYLLLANNHFSG---KIP-------ANLSHCSNLLTKLFI 113 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~---~~p-------~~l~~l~~L~~~L~L 113 (549)
.+...+.+...|+.|+|++|.|... +...+...++|+.|+++++.... ..| ..+..+++| +.|+|
T Consensus 22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L-~~L~L 100 (344)
T d2ca6a1 22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL-HTVRL 100 (344)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC-CEEEC
T ss_pred HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCc-ccccc
Confidence 4455677788999999999988642 44556778999999998876541 112 334557788 88999
Q ss_pred cccccccc----cccccCCCCCCCEEEeecceeeeeCC----c---------cccCCCCCCEEecccCcceec----ccc
Q 039925 114 CETHLSGQ----LLDFIGNPSAIQVMIFKENSLEGKFP----N---------TLSNLRSLFYDNINRNEFSGL----IPS 172 (549)
Q Consensus 114 s~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p----~---------~~~~l~~L~~L~L~~n~l~~~----~p~ 172 (549)
++|.++.. +...+...++|++|++++|.+...-. . .....+.|+.|.+++|.+... +..
T Consensus 101 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~ 180 (344)
T d2ca6a1 101 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180 (344)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred cccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccc
Confidence 99888654 33445567889999998887752111 0 123466788888888877532 223
Q ss_pred cccccc-cceeeCCCCcCcccCchh-hhhcCCCCcEeeecccccccccccCcccccEEEccccccccc----cChhhhhc
Q 039925 173 FIFNIS-LKWNFLPENSFTGNLPLE-IGVTLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGT----ITLGIKKL 246 (549)
Q Consensus 173 ~~~~l~-L~~L~l~~n~l~~~~p~~-~~~~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l 246 (549)
.+.... |+.|++++|.++...... +. ..+...++|+.|++++|.++.. +...+...
T Consensus 181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~------------------~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~ 242 (344)
T d2ca6a1 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLL------------------EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242 (344)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHH------------------TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred hhhhhhhhcccccccccccccccccchh------------------hhhcchhhhccccccccccccccccccccccccc
Confidence 344555 888888888876321111 11 0112335788999999988643 33455677
Q ss_pred cccCccEEEcCCCcccccCCCcCccccC--CccccCeeeccCcccccc----CCcccc-CCCCCCEEEccCCcccc
Q 039925 247 IFVNLYALTMVKNKLSGPIPHHIASSLG--NLTLLTYLALDNNKLQGN----LPSSLG-YYQNLMELSVSRNKLSA 315 (549)
Q Consensus 247 ~~~~L~~L~L~~n~l~~~~p~~l~~~l~--~l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~Ls~N~l~~ 315 (549)
++|++|+|++|.+++.....+...+. ..+.|++|++++|+|+.. +...+. ++++|+.|+|++|++..
T Consensus 243 --~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 243 --PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp --TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred --ccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 89999999999987543222233333 246799999999998743 333443 57899999999999863
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=9.2e-15 Score=139.55 Aligned_cols=102 Identities=15% Similarity=0.077 Sum_probs=52.0
Q ss_pred CEeecccccccccCCcccccccCccceeeecccccccc-cccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEecc
Q 039925 84 EYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQ-LLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNIN 162 (549)
Q Consensus 84 ~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 162 (549)
..+.++...+.. .........+| ++||+++|.++.. +...+..+++|++|+|++|.++...+..+..+++|++|+++
T Consensus 26 ~~lrl~~~~~~~-~~~~~~~~~~L-~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls 103 (284)
T d2astb2 26 IAFRCPRSFMDQ-PLAEHFSPFRV-QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 103 (284)
T ss_dssp SEEECTTCEECS-CCCSCCCCBCC-CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred eEeecccccccc-chhhhccCCCC-CEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence 344444444432 12222334455 6666666655432 33445566666666666666655555556666666666666
Q ss_pred cC-cceec-ccccccccc-cceeeCCCC
Q 039925 163 RN-EFSGL-IPSFIFNIS-LKWNFLPEN 187 (549)
Q Consensus 163 ~n-~l~~~-~p~~~~~l~-L~~L~l~~n 187 (549)
++ .++.. +...+.+++ |++|+++++
T Consensus 104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c 131 (284)
T d2astb2 104 GCSGFSEFALQTLLSSCSRLDELNLSWC 131 (284)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred ccccccccccchhhHHHHhccccccccc
Confidence 64 33321 112223445 666666654
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=1.3e-15 Score=146.91 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=66.8
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
+.|+..+.||+|+||.||+|+... +.. ++++.. .+.
T Consensus 15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-----~~~ 89 (309)
T d1u5ra_ 15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-----EHT 89 (309)
T ss_dssp HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTE
T ss_pred HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEE-----CCE
Confidence 348888899999999999999753 332 577776 778
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++|||||++|++..++... ..+++..+..++.||++||+|||
T Consensus 90 ~~iv~E~~~~g~l~~~~~~~------~~l~e~~~~~i~~qi~~aL~yLH 132 (309)
T d1u5ra_ 90 AWLVMEYCLGSASDLLEVHK------KPLQEVEIAAVTHGALQGLAYLH 132 (309)
T ss_dssp EEEEEECCSEEHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCchHHHHHhC------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998776643 36899999999999999999999
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.3e-14 Score=141.15 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=70.5
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce------------------------------------eEEEeccccCCCce
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~------------------------------------~g~~~~~~~~~~~~ 435 (549)
..++|...+.||+|+||+||+|+... +.. ++++.. +..
T Consensus 4 ~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~-----~~~ 78 (322)
T d1s9ja_ 4 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-----DGE 78 (322)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEEC-----SSE
T ss_pred CccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----CCE
Confidence 46789999999999999999999753 332 577777 778
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++|||||++|+|.++++..+ .+++.....++.|+++||.|||
T Consensus 79 ~~iVmEy~~gg~L~~~l~~~~------~l~~~~~~~~~~qil~aL~yLH 121 (322)
T d1s9ja_ 79 ISICMEHMDGGSLDQVLKKAG------RIPEQILGKVSIAVIKGLTYLR 121 (322)
T ss_dssp EEEEEECCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998654 5899999999999999999999
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.1e-14 Score=137.08 Aligned_cols=219 Identities=16% Similarity=0.109 Sum_probs=153.7
Q ss_pred CEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeee-CCccccCCCCCCEEecc
Q 039925 84 EYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGK-FPNTLSNLRSLFYDNIN 162 (549)
Q Consensus 84 ~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~ 162 (549)
+.|||+++.+.......+.. ... ..+.++...+.... .......+|++||+++|.++.. +...+.++++|++|+++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~-~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~ 79 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGV-IAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTC-SEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred CEEECCCCCCCchHHHHHHh-ccc-eEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence 46777777665222222211 122 45555555444222 2334567999999999998743 44557889999999999
Q ss_pred cCcceecccccccccc-cceeeCCCC-cCcccCchhhhhcCCCCcEeeecc--cccc--cc--cccCcccccEEEcccc-
Q 039925 163 RNEFSGLIPSFIFNIS-LKWNFLPEN-SFTGNLPLEIGVTLPKGRNYYILL--LAQK--LY--WSDVSTTATIIAMGGN- 233 (549)
Q Consensus 163 ~n~l~~~~p~~~~~l~-L~~L~l~~n-~l~~~~p~~~~~~l~~L~~L~l~~--~~~~--l~--~l~~~~~L~~L~l~~n- 233 (549)
+|.+....+..+..++ |++|+++++ .++...-..+...+++|++|++++ .+.. +. .....++|+.|+++++
T Consensus 80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 159 (284)
T d2astb2 80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 159 (284)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence 9999887788888888 999999995 565433334455899999999986 2221 11 1134568999999875
Q ss_pred -ccccc-cChhhhhccccCccEEEcCCCc-ccccCCCcCccccCCccccCeeeccCc-cccccCCccccCCCCCCEEEcc
Q 039925 234 -QISGT-ITLGIKKLIFVNLYALTMVKNK-LSGPIPHHIASSLGNLTLLTYLALDNN-KLQGNLPSSLGYYQNLMELSVS 309 (549)
Q Consensus 234 -~l~~~-~~~~~~~l~~~~L~~L~L~~n~-l~~~~p~~l~~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls 309 (549)
.++.. +......+ ++|++|++++|. +++.. ...+..+++|++|+|++| .+++.....+.++++|+.|+++
T Consensus 160 ~~i~~~~l~~l~~~~--~~L~~L~L~~~~~itd~~----~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~ 233 (284)
T d2astb2 160 KNLQKSDLSTLVRRC--PNLVHLDLSDSVMLKNDC----FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233 (284)
T ss_dssp GGSCHHHHHHHHHHC--TTCSEEECTTCTTCCGGG----GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred ccccccccccccccc--ccccccccccccCCCchh----hhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeee
Confidence 34432 33344667 899999999874 66444 466788999999999995 6776666778899999999998
Q ss_pred CC
Q 039925 310 RN 311 (549)
Q Consensus 310 ~N 311 (549)
++
T Consensus 234 ~~ 235 (284)
T d2astb2 234 GI 235 (284)
T ss_dssp TS
T ss_pred CC
Confidence 87
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=4.1e-15 Score=141.55 Aligned_cols=85 Identities=13% Similarity=0.207 Sum_probs=66.8
Q ss_pred ccccCcCCCccccCceecEEEEEeC-CCce--------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILG-EKWT--------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--------------------------------------~g~~~~~~~~~~ 433 (549)
..+.|...+.||+|+||.||+|+.. ++.. ++++... ....
T Consensus 5 l~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~-~~~~ 83 (277)
T d1o6ya_ 5 LSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAE-TPAG 83 (277)
T ss_dssp ETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEE-CSSS
T ss_pred ccceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeec-cCCC
Confidence 4567888999999999999999974 3332 3343321 1112
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
...++||||+++|+|.+++...+ .+++.....++.|+++||+|||
T Consensus 84 ~~~~lvmE~~~g~~L~~~~~~~~------~l~~~~~~~i~~qi~~al~~lH 128 (277)
T d1o6ya_ 84 PLPYIVMEYVDGVTLRDIVHTEG------PMTPKRAIEVIADACQALNFSH 128 (277)
T ss_dssp EEEEEEEECCCEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCEehhhhcccC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999987654 6899999999999999999999
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2e-15 Score=146.38 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=68.1
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce---------------------------------------eEEEeccccCCCc
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT---------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------------~g~~~~~~~~~~~ 434 (549)
++|...+.||+|+||+||+|+... +.. ++++.+ .+
T Consensus 2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~-----~~ 76 (320)
T d1xjda_ 2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQT-----KE 76 (320)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEEC-----SS
T ss_pred CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEcc-----CC
Confidence 578888999999999999999854 322 566666 77
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++|||||++|+|.++++... .++..+...++.||+.||+|||
T Consensus 77 ~~yivmEy~~~g~L~~~i~~~~------~~~e~~~~~~~~qi~~al~ylH 120 (320)
T d1xjda_ 77 NLFFVMEYLNGGDLMYHIQSCH------KFDLSRATFYAAEIILGLQFLH 120 (320)
T ss_dssp EEEEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEeecCCCcHHHHhhccC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998654 5788889999999999999999
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.9e-15 Score=154.31 Aligned_cols=134 Identities=16% Similarity=0.092 Sum_probs=92.4
Q ss_pred cceeeCCCCcCcccCc----hhhhhcCCCCcEeeecccc-c-----ccc-c-ccCcccccEEEccccccccccChhh---
Q 039925 179 LKWNFLPENSFTGNLP----LEIGVTLPKGRNYYILLLA-Q-----KLY-W-SDVSTTATIIAMGGNQISGTITLGI--- 243 (549)
Q Consensus 179 L~~L~l~~n~l~~~~p----~~~~~~l~~L~~L~l~~~~-~-----~l~-~-l~~~~~L~~L~l~~n~l~~~~~~~~--- 243 (549)
++.+++++|.+..... ..+. ..+.++.++++.+- . .+. . ......|+.++++++.++......+
T Consensus 257 l~~l~l~~n~i~~~~~~~~~~~l~-~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~ 335 (460)
T d1z7xw1 257 LRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 335 (460)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred cccccccccccccccccccccccc-ccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccc
Confidence 9999999998874322 2223 67888888887621 1 110 0 1223479999999999886543333
Q ss_pred -hhccccCccEEEcCCCcccccCCCcCccccC-CccccCeeeccCcccccc----CCccccCCCCCCEEEccCCcccc
Q 039925 244 -KKLIFVNLYALTMVKNKLSGPIPHHIASSLG-NLTLLTYLALDNNKLQGN----LPSSLGYYQNLMELSVSRNKLSA 315 (549)
Q Consensus 244 -~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~-~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 315 (549)
... ++|++|+|++|.+++.....++..+. ..+.|++|+|++|.++.. +...+..+++|++|+|++|+++.
T Consensus 336 ~~~~--~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 411 (460)
T d1z7xw1 336 LAQN--RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411 (460)
T ss_dssp HHHC--SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred cccc--cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence 344 68999999999987532212234443 467799999999999743 45567778999999999999874
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.9e-15 Score=142.94 Aligned_cols=80 Identities=20% Similarity=0.200 Sum_probs=69.2
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCc
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~ 434 (549)
.++|...+.||+|+||.||+|+... +.. ++++.+ .+
T Consensus 7 p~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----~~ 81 (288)
T d1uu3a_ 7 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD-----DE 81 (288)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEEC-----SS
T ss_pred CCCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEE-----CC
Confidence 4689999999999999999999753 332 566666 77
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|.+++...+ .+++.....++.|++.||+|||
T Consensus 82 ~~~ivmEy~~gg~L~~~~~~~~------~l~e~~~~~~~~qi~~al~ylH 125 (288)
T d1uu3a_ 82 KLYFGLSYAKNGELLKYIRKIG------SFDETCTRFYTAEIVSALEYLH 125 (288)
T ss_dssp EEEEEECCCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEccCCCCHHHhhhccC------CCCHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999988654 6899999999999999999999
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=3.7e-14 Score=138.30 Aligned_cols=87 Identities=14% Similarity=0.232 Sum_probs=66.9
Q ss_pred ccccCcCC-CccccCceecEEEEEeC-CCce-------------------------------eEEEeccccCCCceEEEE
Q 039925 393 VTNEFSSS-NMIGQGSFGSVYKGILG-EKWT-------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 393 ~~~~~~~~-~~lG~G~~g~Vy~~~~~-~~~~-------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
..++|... ++||+|+||.||+|+.. ++.. ++++.+. .......++|
T Consensus 9 i~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~-~~~~~~~~iv 87 (335)
T d2ozaa1 9 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKCLLIV 87 (335)
T ss_dssp GGGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEEEEEE
T ss_pred cccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCcHHHHHHHHHHHHhcCCCCCCeEEEEEeec-ccCCCEEEEE
Confidence 34677654 57999999999999974 3333 3443321 1124568999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||++|+|.++|+... ...+++.+...|+.|+++||+|||
T Consensus 88 mEy~~gg~L~~~i~~~~----~~~l~e~~~~~i~~qi~~al~ylH 128 (335)
T d2ozaa1 88 MECLDGGELFSRIQDRG----DQAFTEREASEIMKSIGEAIQYLH 128 (335)
T ss_dssp EECCCSEEHHHHHHSCS----CCCEEHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHhcC----CCCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998643 356999999999999999999999
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.46 E-value=1.3e-14 Score=143.27 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=68.3
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce-----------------------------------------eEEEeccccC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT-----------------------------------------AGYSEGTDFK 431 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-----------------------------------------~g~~~~~~~~ 431 (549)
-++|...++||+|+||.||+|+... +.. ++++..
T Consensus 3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~---- 78 (364)
T d1omwa3 3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT---- 78 (364)
T ss_dssp STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC----
T ss_pred HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEE----
Confidence 4689999999999999999999753 432 355555
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++|||||++|+|.++|.... .+++.....++.||+.||+|||
T Consensus 79 -~~~~~ivmE~~~gg~L~~~l~~~~------~~~e~~~~~~~~qi~~aL~ylH 124 (364)
T d1omwa3 79 -PDKLSFILDLMNGGDLHYHLSQHG------VFSEADMRFYAAEIILGLEHMH 124 (364)
T ss_dssp -SSEEEEEECCCCSCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEEecCCCcHHHHHHhcc------cccHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998654 5788899999999999999999
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=99.46 E-value=1.1e-14 Score=142.85 Aligned_cols=82 Identities=12% Similarity=0.168 Sum_probs=69.3
Q ss_pred ccccCcCCCccccCceecEEEEEeC-CCce-----------------------------------eEEEeccccCCCceE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILG-EKWT-----------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-----------------------------------~g~~~~~~~~~~~~~ 436 (549)
..++|...+.||+|+||.||+|+.. ++.. ++++.. ++..
T Consensus 27 ~~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-----~~~~ 101 (352)
T d1koba_ 27 VYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFED-----KYEM 101 (352)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEEC-----SSEE
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----CCEE
Confidence 4467888899999999999999975 3433 566666 7889
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|||||++|+|.+++.... .++++.....|+.||++||.|||
T Consensus 102 ~ivmE~~~gg~L~~~~~~~~-----~~l~e~~~~~i~~qi~~aL~ylH 144 (352)
T d1koba_ 102 VLILEFLSGGELFDRIAAED-----YKMSEAEVINYMRQACEGLKHMH 144 (352)
T ss_dssp EEEEECCCCCBHHHHTTCTT-----CCBCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877543 46899999999999999999999
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=2e-13 Score=112.41 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=97.5
Q ss_pred CEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCccccCCCCCCEEeccc
Q 039925 84 EYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLSNLRSLFYDNINR 163 (549)
Q Consensus 84 ~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 163 (549)
|+|+|++|+++ .++ .+..+++| ++|++++|.|+ .+|..|+.+++|++|++++|.++ .+| .+..+++|++|++++
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L-~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~ 74 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLV-THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN 74 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTC-CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCC-CEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence 68999999999 566 48999999 99999999998 56778999999999999999998 455 599999999999999
Q ss_pred Ccceecc-cccccccc-cceeeCCCCcCccc--CchhhhhcCCCCcEe
Q 039925 164 NEFSGLI-PSFIFNIS-LKWNFLPENSFTGN--LPLEIGVTLPKGRNY 207 (549)
Q Consensus 164 n~l~~~~-p~~~~~l~-L~~L~l~~n~l~~~--~p~~~~~~l~~L~~L 207 (549)
|++.... ...+..++ |+.|++++|+++.. .+..+...+|+|+.|
T Consensus 75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 9998543 25678888 99999999999742 344454456666544
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.41 E-value=4.7e-14 Score=135.74 Aligned_cols=81 Identities=26% Similarity=0.361 Sum_probs=61.8
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce---------------------------------eEEEeccccCCCceEEEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT---------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
.+.|...+.||+|+||.||+|+... +.. .+.|... .+..++|
T Consensus 6 g~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~----~~~~~iv 81 (299)
T d1ckia_ 6 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAE----GDYNVMV 81 (299)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEEE----TTEEEEE
T ss_pred CCEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEec----CCEEEEE
Confidence 3568888999999999999999754 322 2333321 5678899
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+. |++.+.+.... ..+++..+..++.|+++||+|||
T Consensus 82 me~~~-~~l~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH 120 (299)
T d1ckia_ 82 MELLG-PSLEDLFNFCS-----RKFSLKTVLLLADQMISRIEYIH 120 (299)
T ss_dssp EECCC-CBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcC-Cchhhhhhhcc-----CCCcHHHHHHHHHHHHHHHHHHH
Confidence 99984 56666655432 46899999999999999999999
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.37 E-value=3.5e-14 Score=139.60 Aligned_cols=223 Identities=15% Similarity=0.103 Sum_probs=149.0
Q ss_pred cCCccccCCCCCCEeeccccccccc----CCcccccccCccceeeecccccccc----------cccccCCCCCCCEEEe
Q 039925 72 EIPEKVGRLFRLEYLLLANNHFSGK----IPANLSHCSNLLTKLFICETHLSGQ----------LLDFIGNPSAIQVMIF 137 (549)
Q Consensus 72 ~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~L 137 (549)
.+...+.....|+.|+|++|.|... +...+...++| +.|+++++..... +...+...++|+.|+|
T Consensus 22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L-~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L 100 (344)
T d2ca6a1 22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL-EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 100 (344)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTC-CEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCC-CEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence 3556677788999999999988632 33446677888 8999987754321 2234566788999999
Q ss_pred ecceeeee----CCccccCCCCCCEEecccCcceecccccc-------------cccc-cceeeCCCCcCcccCchhhhh
Q 039925 138 KENSLEGK----FPNTLSNLRSLFYDNINRNEFSGLIPSFI-------------FNIS-LKWNFLPENSFTGNLPLEIGV 199 (549)
Q Consensus 138 ~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-------------~~l~-L~~L~l~~n~l~~~~p~~~~~ 199 (549)
++|.++.. +...+..+++|++|++++|.+.......+ .... |+.+.+++|.++......+..
T Consensus 101 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~ 180 (344)
T d2ca6a1 101 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180 (344)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred cccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccc
Confidence 99888643 33445567889999998887653211111 2233 778888887776332222221
Q ss_pred cCCCCcEeeecccccccccccCcccccEEEccccccccc-----cChhhhhccccCccEEEcCCCcccccCCCcCccccC
Q 039925 200 TLPKGRNYYILLLAQKLYWSDVSTTATIIAMGGNQISGT-----ITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLG 274 (549)
Q Consensus 200 ~l~~L~~L~l~~~~~~l~~l~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~ 274 (549)
. +...+.|+.|++++|.+... +...+... ++|+.|+|++|.++......+...+.
T Consensus 181 ~------------------l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~--~~L~~L~Ls~N~i~~~g~~~L~~~l~ 240 (344)
T d2ca6a1 181 T------------------FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC--QELKVLDLQDNTFTHLGSSALAIALK 240 (344)
T ss_dssp H------------------HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC--TTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred h------------------hhhhhhhcccccccccccccccccchhhhhcch--hhhccccccccccccccccccccccc
Confidence 1 11224788899999988742 23345666 88999999999886432223345677
Q ss_pred CccccCeeeccCccccccCC----cccc--CCCCCCEEEccCCcccc
Q 039925 275 NLTLLTYLALDNNKLQGNLP----SSLG--YYQNLMELSVSRNKLSA 315 (549)
Q Consensus 275 ~l~~L~~L~Ls~N~l~~~~p----~~l~--~l~~L~~L~Ls~N~l~~ 315 (549)
.+++|++|+|++|.|++.-. ..+. ..+.|+.|++++|+++.
T Consensus 241 ~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~ 287 (344)
T d2ca6a1 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 287 (344)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred ccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence 88999999999999885422 2333 24679999999999863
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.36 E-value=7.2e-15 Score=132.07 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=94.2
Q ss_pred ecCccccCCCCCCEEEccCCcceecCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccC
Q 039925 48 CLTPHVGNFGYLRFINLVDNNFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIG 127 (549)
Q Consensus 48 ~lp~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~ 127 (549)
.+|.++..+++|++|+|++|+|+ .++ .|..+++|++|+|++|.|+ .+|..+..+++| ++|++++|+++.. ..+.
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L-~~L~l~~N~i~~l--~~~~ 112 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL-EELWISYNQIASL--SGIE 112 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHC-CEEECSEEECCCH--HHHH
T ss_pred hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccc-ccccccccccccc--cccc
Confidence 45667889999999999999998 565 5888999999999999998 677666666778 9999999998853 3477
Q ss_pred CCCCCCEEEeecceeeeeCC--ccccCCCCCCEEecccCcceecc
Q 039925 128 NPSAIQVMIFKENSLEGKFP--NTLSNLRSLFYDNINRNEFSGLI 170 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~ 170 (549)
.+++|++|++++|+++. ++ ..+..+++|++|++++|.+....
T Consensus 113 ~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~ 156 (198)
T d1m9la_ 113 KLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp HHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred ccccccccccccchhcc-ccccccccCCCccceeecCCCccccCc
Confidence 78899999999999873 33 45788999999999999876443
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.3e-13 Score=134.21 Aligned_cols=81 Identities=21% Similarity=0.213 Sum_probs=69.2
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCC
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGI 433 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~ 433 (549)
..++|...+.||+|+||.||+|+... +.. ++++.+ .
T Consensus 3 ~l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~-----~ 77 (337)
T d1o6la_ 3 TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT-----H 77 (337)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEEC-----S
T ss_pred chHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeecc-----c
Confidence 35789999999999999999999743 332 566666 7
Q ss_pred ceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 434 DFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 434 ~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+..++|||||++|+|.+++.... .++......++.|++.||+|||
T Consensus 78 ~~~~iv~ey~~gg~L~~~~~~~~------~~~e~~~~~~~~qil~al~ylH 122 (337)
T d1o6la_ 78 DRLCFVMEYANGGELFFHLSRER------VFTEERARFYGAEIVSALEYLH 122 (337)
T ss_dssp SEEEEEEECCTTCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceeccCCCchhhhhhccc------CCcHHHHHHHHHHHhhhhhhhh
Confidence 88999999999999999998654 5888888899999999999999
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.1e-13 Score=131.02 Aligned_cols=79 Identities=22% Similarity=0.304 Sum_probs=64.1
Q ss_pred ccCcCCCccccCceecEEEEEeC-CCce-------------------------------------------eEEEecccc
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILG-EKWT-------------------------------------------AGYSEGTDF 430 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-------------------------------------------~g~~~~~~~ 430 (549)
+.|...+.||+|+||.||+|+.. ++.. ++++..
T Consensus 4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~--- 80 (273)
T d1xwsa_ 4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER--- 80 (273)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC---
T ss_pred CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEee---
Confidence 46888899999999999999975 3332 344444
Q ss_pred CCCceEEEEEeecCC-CCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQN-RSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~-GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+..++||||+.+ +++.+++.... .+++.....++.|+++||+|||
T Consensus 81 --~~~~~lv~e~~~~~~~l~~~~~~~~------~l~e~~~~~~~~qi~~al~~lH 127 (273)
T d1xwsa_ 81 --PDSFVLILERPEPVQDLFDFITERG------ALQEELARSFFWQVLEAVRHCH 127 (273)
T ss_dssp --SSEEEEEEECCSSEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCeEEEEEEeccCcchHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 6778999999976 67788877543 6899999999999999999999
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=3e-13 Score=129.83 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=63.5
Q ss_pred ccCcCCCccccCceecEEEEEeC-CCce-------------------------------------eEEEeccccCCCceE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILG-EKWT-------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-------------------------------------~g~~~~~~~~~~~~~ 436 (549)
++|...+.||+|+||.||+|+.. ++.. ++++.. +...
T Consensus 2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~-----~~~~ 76 (298)
T d1gz8a_ 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-----ENKL 76 (298)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTEE
T ss_pred CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEecccccc-----ccce
Confidence 67888899999999999999974 3332 566666 7789
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++||||+.++.+ +++.... ...+++.....++.|++.||+|||
T Consensus 77 ~iv~e~~~~~~~-~~~~~~~----~~~l~e~~~~~~~~qil~~L~yLH 119 (298)
T d1gz8a_ 77 YLVFEFLHQDLK-KFMDASA----LTGIPLPLIKSYLFQLLQGLAFCH 119 (298)
T ss_dssp EEEEECCSEEHH-HHHHHTT----TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeecCCchh-hhhhhhc----ccCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999986544 4443322 346899999999999999999999
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.34 E-value=1.5e-14 Score=129.87 Aligned_cols=115 Identities=16% Similarity=0.202 Sum_probs=95.9
Q ss_pred cCCccccCCCCCCEeecccccccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceeeeeCCcccc
Q 039925 72 EIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLEGKFPNTLS 151 (549)
Q Consensus 72 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 151 (549)
.++.++..+++|++|+|++|+|+ .++ .+..+++| ++|++++|.++ .+|..+..+++|++|++++|.++. + ..+.
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L-~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~ 112 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENL-RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIE 112 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTC-CEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHH
T ss_pred hhhhHHhcccccceeECcccCCC-Ccc-cccCCccc-cChhhcccccc-cccccccccccccccccccccccc-c-cccc
Confidence 56678899999999999999999 565 58999999 99999999997 455555666789999999999984 3 3588
Q ss_pred CCCCCCEEecccCcceeccc-ccccccc-cceeeCCCCcCccc
Q 039925 152 NLRSLFYDNINRNEFSGLIP-SFIFNIS-LKWNFLPENSFTGN 192 (549)
Q Consensus 152 ~l~~L~~L~L~~n~l~~~~p-~~~~~l~-L~~L~l~~n~l~~~ 192 (549)
.+++|++|++++|+++.... ..+..++ |+.|++++|++...
T Consensus 113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 155 (198)
T d1m9la_ 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred ccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence 89999999999999985432 4678888 99999999988643
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.7e-14 Score=144.53 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=51.3
Q ss_pred CCCEEEccCCcceec-CCccccCCCCCCEeecccccccc----cCCcccccccCccceeeecccccccc----cccccC-
Q 039925 58 YLRFINLVDNNFRGE-IPEKVGRLFRLEYLLLANNHFSG----KIPANLSHCSNLLTKLFICETHLSGQ----LLDFIG- 127 (549)
Q Consensus 58 ~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~~L~Ls~n~l~~~----~~~~~~- 127 (549)
+|+.||+++|++++. +.+-+..+++|++|+|++|.++. .++..+..+++| ++|+|++|.|+.. +...+.
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L-~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL-AELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTC-CEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCC-CEEECcCCcCChHHHHHHHHHHhc
Confidence 345555555555532 12223345555555555555542 223334455555 5556655555421 112221
Q ss_pred CCCCCCEEEeecceeeee----CCccccCCCCCCEEecccCcc
Q 039925 128 NPSAIQVMIFKENSLEGK----FPNTLSNLRSLFYDNINRNEF 166 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l 166 (549)
...+|++|+|++|.++.. ++..+..+++|++|++++|.+
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i 124 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 124 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence 123455566655555422 233445555556666555544
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=99.32 E-value=5.9e-13 Score=126.98 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=66.6
Q ss_pred ccCcCCCccccCceecEEEEEeCCCce-------------------------------------eEEEeccccCCCceEE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGEKWT-------------------------------------AGYSEGTDFKGIDFKA 437 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~-------------------------------------~g~~~~~~~~~~~~~~ 437 (549)
+.|...+.||+|+||.||+|+.+++.. ++++.. .+..+
T Consensus 2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~~~ 76 (286)
T d1ob3a_ 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHT-----KKRLV 76 (286)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEEC-----SSCEE
T ss_pred CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeeccc-----CCcee
Confidence 567788899999999999999876654 455655 77889
Q ss_pred EEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 438 VVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 438 lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|||+.++.+..+.+.. ..++......++.||+.||+|||
T Consensus 77 i~~e~~~~~~~~~~~~~~------~~l~~~~~~~i~~qi~~~L~~LH 117 (286)
T d1ob3a_ 77 LVFEHLDQDLKKLLDVCE------GGLESVTAKSFLLQLLNGIAYCH 117 (286)
T ss_dssp EEEECCSEEHHHHHHTST------TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeehhhhHHHHHhhc------CCcchhhhHHHHHHHHHHHHHhc
Confidence 999999988877776643 36899999999999999999999
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.31 E-value=4.1e-13 Score=129.68 Aligned_cols=79 Identities=22% Similarity=0.224 Sum_probs=67.6
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCce
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGIDF 435 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~~ 435 (549)
++|...+.||+|+||.||+|+... +.. ++++.. .+.
T Consensus 4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-----~~~ 78 (316)
T d1fota_ 4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD-----AQQ 78 (316)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEEC-----SSE
T ss_pred hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEee-----CCe
Confidence 578889999999999999999753 432 566666 788
Q ss_pred EEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 436 KAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 436 ~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.++|||||++|++..++.... .+++.....++.|++.||+|||
T Consensus 79 ~~ivmE~~~gg~l~~~~~~~~------~~~~~~~~~~~~qi~~al~~lH 121 (316)
T d1fota_ 79 IFMIMDYIEGGELFSLLRKSQ------RFPNPVAKFYAAEVCLALEYLH 121 (316)
T ss_dssp EEEEECCCCSCBHHHHHHHTS------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeeEeeecCCccccccccccc------cccccHHHHHHHHHHHhhhhhc
Confidence 999999999999999988654 5778888889999999999999
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=5.2e-13 Score=128.23 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=59.7
Q ss_pred CccccCceecEEEEEeCC-Cce----------------------------------------eEEEeccccCCCceEEEE
Q 039925 401 NMIGQGSFGSVYKGILGE-KWT----------------------------------------AGYSEGTDFKGIDFKAVV 439 (549)
Q Consensus 401 ~~lG~G~~g~Vy~~~~~~-~~~----------------------------------------~g~~~~~~~~~~~~~~lv 439 (549)
++||+|+||+||+|+... +.. ++++.. ++..++|
T Consensus 4 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~-----~~~~~iv 78 (299)
T d1ua2a_ 4 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH-----KSNISLV 78 (299)
T ss_dssp EEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECC-----TTCCEEE
T ss_pred eEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeecc-----CCceeeh
Confidence 579999999999999743 332 455555 6788999
Q ss_pred EeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 440 FDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 440 ~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|||+++|++..+.... ..+++.....++.||+.||+|||
T Consensus 79 mE~~~~~~~~~~~~~~------~~l~~~~~~~~~~qil~aL~~lH 117 (299)
T d1ua2a_ 79 FDFMETDLEVIIKDNS------LVLTPSHIKAYMLMTLQGLEYLH 117 (299)
T ss_dssp EECCSEEHHHHHTTCC------SSCCSSHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchHHhhhhhcc------cCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999887776543 36888899999999999999999
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.30 E-value=9.4e-13 Score=125.90 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=65.5
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce----------------------------------eEEEeccccCCCceEEE
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT----------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~----------------------------------~g~~~~~~~~~~~~~~l 438 (549)
.++|...+.||+|+||.||+|+... +.. .+++.. ....++
T Consensus 4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-----~~~~~~ 78 (293)
T d1csna_ 4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQE-----GLHNVL 78 (293)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEE-----TTEEEE
T ss_pred CCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeec-----CCccEE
Confidence 4578888999999999999999753 332 344444 667899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+ +|+|.++++... ..+++.....++.|++.||+|||
T Consensus 79 vme~~-~~~l~~~~~~~~-----~~~~~~~~~~i~~q~~~~l~~lH 118 (293)
T d1csna_ 79 VIDLL-GPSLEDLLDLCG-----RKFSVKTVAMAAKQMLARVQSIH 118 (293)
T ss_dssp EEECC-CCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEec-CCCHHHHHHhhc-----cchhhHHHHHHHHHHHHHHHHHH
Confidence 99998 689999987543 46899999999999999999999
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.9e-12 Score=124.64 Aligned_cols=88 Identities=10% Similarity=0.142 Sum_probs=65.3
Q ss_pred cccccCcCCCccccCceecEEEEEeC-C-Cc-e---------------------------------------eEEEeccc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG-E-KW-T---------------------------------------AGYSEGTD 429 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~-~~-~---------------------------------------~g~~~~~~ 429 (549)
+..++|...+.||+|+||+||+|+.. + +. + ++++....
T Consensus 4 ~~~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~ 83 (305)
T d1blxa_ 4 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 83 (305)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred CCcCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccc
Confidence 34578888899999999999999973 3 32 2 34443222
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.......+++|||+++|.+....... ...+++.....++.|++.||+|||
T Consensus 84 ~~~~~~~~~~~e~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~qi~~aL~yLH 133 (305)
T d1blxa_ 84 TDRETKLTLVFEHVDQDLTTYLDKVP-----EPGVPTETIKDMMFQLLRGLDFLH 133 (305)
T ss_dssp CSSEEEEEEEEECCSCBHHHHHHHSC-----TTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCceEEEEEEeccCCchhhhhhcc-----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22245679999999998876554433 246888888999999999999999
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=8.3e-13 Score=129.31 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=68.5
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce--------------------------------------eEEEeccccCCCc
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT--------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~--------------------------------------~g~~~~~~~~~~~ 434 (549)
-++|...+.||+|+||.||+|+... +.. ++++.. ..
T Consensus 40 ld~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~ 114 (350)
T d1rdqe_ 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKD-----NS 114 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SS
T ss_pred ccCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccc-----cc
Confidence 4689999999999999999999753 332 455555 67
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+++|+|..++...+ .+++.....++.|+++||.|||
T Consensus 115 ~~~~v~e~~~~g~l~~~l~~~~------~l~e~~~~~i~~qi~~aL~yLH 158 (350)
T d1rdqe_ 115 NLYMVMEYVAGGEMFSHLRRIG------RFSEPHARFYAAQIVLTFEYLH 158 (350)
T ss_dssp EEEEEEECCTTCBHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhHhhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998654 5899999999999999999999
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=99.26 E-value=4.4e-12 Score=123.34 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=63.7
Q ss_pred ccccCcCCCccccCceecEEEEEeCC-Cce---------------------------------eEEEeccccCCCceEEE
Q 039925 393 VTNEFSSSNMIGQGSFGSVYKGILGE-KWT---------------------------------AGYSEGTDFKGIDFKAV 438 (549)
Q Consensus 393 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~---------------------------------~g~~~~~~~~~~~~~~l 438 (549)
.-++|...+.||+|+||+||+|+... +.. ++++.. ......++
T Consensus 33 ~~d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~---~~~~~~~~ 109 (328)
T d3bqca1 33 NQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKD---PVSRTPAL 109 (328)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSCHHHHHHHHHHHHHHTTSTTBCCEEEEEEC---TTTCSEEE
T ss_pred CCcCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEe---cCCCceeE
Confidence 44678899999999999999999753 332 344432 11456899
Q ss_pred EEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 439 VFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 439 v~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
||||+++|+|..+.+ .++......++.||++||+|||
T Consensus 110 v~e~~~~~~L~~~~~---------~l~e~~i~~i~~qil~aL~~LH 146 (328)
T d3bqca1 110 VFEHVNNTDFKQLYQ---------TLTDYDIRFYMYEILKALDYCH 146 (328)
T ss_dssp EEECCCSCBGGGTTT---------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCCCcHHHHhc---------CCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999987643 4888889999999999999999
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=8.9e-12 Score=106.82 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=36.9
Q ss_pred CCCcceeCCCCCceEeecCccccCCCCCCEEEccCC-cceecCCccccCCCCCCEeecccccccccCCcccccccCccce
Q 039925 32 QWRGVTCTHQHQRINKCLTPHVGNFGYLRFINLVDN-NFRGEIPEKVGRLFRLEYLLLANNHFSGKIPANLSHCSNLLTK 110 (549)
Q Consensus 32 ~w~gv~c~~~~~~v~g~lp~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~~ 110 (549)
.+.+++|+.. +.+ .+|..+..+++|++|++++| .++..-+..|.++++|+.|+|++|+|+...|..|..+++| ++
T Consensus 9 ~~~~l~c~~~--~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L-~~ 84 (156)
T d2ifga3 9 GSSGLRCTRD--GAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL-SR 84 (156)
T ss_dssp SSSCEECCSS--CCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC-CE
T ss_pred CCCeEEecCC--CCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccc-cc
Confidence 4556666432 111 33444445555555555433 2443333344444445555554444443333334444444 44
Q ss_pred eeecccccc
Q 039925 111 LFICETHLS 119 (549)
Q Consensus 111 L~Ls~n~l~ 119 (549)
|+|++|+|+
T Consensus 85 L~Ls~N~l~ 93 (156)
T d2ifga3 85 LNLSFNALE 93 (156)
T ss_dssp EECCSSCCS
T ss_pred eeccCCCCc
Confidence 444444443
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.2e-11 Score=106.07 Aligned_cols=105 Identities=15% Similarity=0.038 Sum_probs=53.3
Q ss_pred CCEEEccCCcceecCCccccCCCCCCEeecccc-cccccCCcccccccCccceeeecccccccccccccCCCCCCCEEEe
Q 039925 59 LRFINLVDNNFRGEIPEKVGRLFRLEYLLLANN-HFSGKIPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIF 137 (549)
Q Consensus 59 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 137 (549)
...++.+++.+. ..|..+..+++|++|++++| .++..-++.|.++++| +.|++++|+|+...+.+|..+++|++|+|
T Consensus 10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L-~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 87 (156)
T d2ifga3 10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGEL-RNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (156)
T ss_dssp SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCC-SEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhcccccc-CcceeeccccCCcccccccccccccceec
Confidence 344555555555 44555555555566655444 2553333445555555 55555555555444555555555555555
Q ss_pred ecceeeeeCCccccCCCCCCEEecccCcc
Q 039925 138 KENSLEGKFPNTLSNLRSLFYDNINRNEF 166 (549)
Q Consensus 138 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 166 (549)
++|+++ .+|.......+|++|+|++|.+
T Consensus 88 s~N~l~-~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 88 SFNALE-SLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp CSSCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred cCCCCc-ccChhhhccccccccccCCCcc
Confidence 555555 3333332333455555555544
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.7e-12 Score=127.38 Aligned_cols=86 Identities=20% Similarity=0.291 Sum_probs=62.1
Q ss_pred cCcCCCccccCceecEEEEEeCC-Cce-------------------------------eEEEeccc-cCCCceEEEEEee
Q 039925 396 EFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------AGYSEGTD-FKGIDFKAVVFDY 442 (549)
Q Consensus 396 ~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------~g~~~~~~-~~~~~~~~lv~ey 442 (549)
+|...++||+|+||+||+|+... +.. ++++.... .......++||||
T Consensus 21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey 100 (350)
T d1q5ka_ 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDY 100 (350)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEEC
T ss_pred CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEec
Confidence 68888999999999999999854 332 34443311 1223457899999
Q ss_pred cCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 443 MQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 443 ~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
|++|.+....+... ....+++.+...++.||++||+|||
T Consensus 101 ~~~~~~~~l~~~~~---~~~~l~~~~~~~i~~qil~aL~yLH 139 (350)
T d1q5ka_ 101 VPETVYRVARHYSR---AKQTLPVIYVKLYMYQLFRSLAYIH 139 (350)
T ss_dssp CSEEHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHhhhh---ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99775444433211 2346899999999999999999999
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.5e-12 Score=122.97 Aligned_cols=79 Identities=14% Similarity=0.207 Sum_probs=65.8
Q ss_pred ccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEeccccCCCceE
Q 039925 395 NEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDFKGIDFK 436 (549)
Q Consensus 395 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~~~~~~~ 436 (549)
+.|...+.||+|+||+||+|+... +.. .+++.. ....
T Consensus 2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~-----~~~~ 76 (292)
T d1unla_ 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-----DKKL 76 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SSEE
T ss_pred CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeecccccc-----ccce
Confidence 467788899999999999999753 332 455665 6788
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
++|+||+.++++..+++..+ .+++.....++.|+++||+|||
T Consensus 77 ~iv~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~q~~~aL~~lH 118 (292)
T d1unla_ 77 TLVFEFCDQDLKKYFDSCNG------DLDPEIVKSFLFQLLKGLGFCH 118 (292)
T ss_dssp EEEEECCSEEHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeeecccccccccccccc------ccchhHHHHHHHHHHHHHHHhh
Confidence 99999999999998877543 6788889999999999999999
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.5e-12 Score=127.85 Aligned_cols=87 Identities=10% Similarity=0.077 Sum_probs=65.3
Q ss_pred ccccccCcCCCccccCceecEEEEEeC-CCce-------------------------------------eEEEeccccCC
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILG-EKWT-------------------------------------AGYSEGTDFKG 432 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-------------------------------------~g~~~~~~~~~ 432 (549)
|...+.|...+.||+|+||+||+|+.. ++.. .+++.......
T Consensus 14 ~~~~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~ 93 (348)
T d2gfsa1 14 WEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLE 93 (348)
T ss_dssp EEEETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTT
T ss_pred ccCCCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccc
Confidence 455678988999999999999999864 3432 23332211111
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++|+||+.+|+|.++++.+ .+++.....++.|++.||+|||
T Consensus 94 ~~~~~~i~~~~~gg~L~~~~~~~-------~l~e~~~~~i~~qil~aL~~LH 138 (348)
T d2gfsa1 94 EFNDVYLVTHLMGADLNNIVKCQ-------KLTDDHVQFLIYQILRGLKYIH 138 (348)
T ss_dssp TCCCCEEEEECCSEEHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEEeecCCchhhhcccc-------cccHHHHHHHHHHHHHHHHHHH
Confidence 23346678889999999999753 4899999999999999999999
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=3.3e-12 Score=125.17 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=58.4
Q ss_pred ccccccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEecccc-C
Q 039925 391 STVTNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDF-K 431 (549)
Q Consensus 391 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~-~ 431 (549)
|...+.|...+.||+|+||+||+|.... +.. ++++...+. .
T Consensus 14 ~~~~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~ 93 (346)
T d1cm8a_ 14 WEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLD 93 (346)
T ss_dssp ECCBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTT
T ss_pred eecCCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCcccc
Confidence 3456788888999999999999999753 432 355543110 1
Q ss_pred CCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 432 GIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 432 ~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.....++||||+ +++|..+.+.. .+++.....++.|++.||+|||
T Consensus 94 ~~~~~~lv~e~~-~~~l~~~~~~~-------~l~~~~~~~~~~qi~~aL~~LH 138 (346)
T d1cm8a_ 94 DFTDFYLVMPFM-GTDLGKLMKHE-------KLGEDRIQFLVYQMLKGLRYIH 138 (346)
T ss_dssp TCCCCEEEEECC-SEEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEecc-cccHHHHHHhc-------cccHHHHHHHHHHHHHHHHHHH
Confidence 123579999999 55777776543 4899999999999999999999
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.2e-11 Score=121.44 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=58.7
Q ss_pred cccCcCCCccccCceecEEEEEeCC-Cce-------------------------------------eEEEecccc-CCCc
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE-KWT-------------------------------------AGYSEGTDF-KGID 434 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~-------------------------------------~g~~~~~~~-~~~~ 434 (549)
.+.|...+.||+|+||+||+|+... +.. ++++..... ....
T Consensus 16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~ 95 (355)
T d2b1pa1 16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 95 (355)
T ss_dssp ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCc
Confidence 3568888999999999999999753 332 344432110 1246
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
..++||||+.+|.+..+ . ..+++.....++.||+.||+|||
T Consensus 96 ~~~iv~Ey~~~~l~~~~-~--------~~~~~~~i~~~~~qil~gl~~LH 136 (355)
T d2b1pa1 96 DVYLVMELMDANLCQVI-Q--------MELDHERMSYLLYQMLCGIKHLH 136 (355)
T ss_dssp EEEEEEECCSEEHHHHH-T--------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEeccchHHHHhh-h--------cCCCHHHHHHHHHHHHHHHHHhh
Confidence 78999999987655443 3 24788889999999999999999
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2.5e-12 Score=124.49 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=64.8
Q ss_pred cccCcCCCccccCceecEEEEEeCC----Cce----------------------------------------eEEEeccc
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILGE----KWT----------------------------------------AGYSEGTD 429 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~~----~~~----------------------------------------~g~~~~~~ 429 (549)
-++|...+.||+|+||.||+|+... +.. .+++..
T Consensus 23 l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~-- 100 (322)
T d1vzoa_ 23 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT-- 100 (322)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE--
T ss_pred hhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeecc--
Confidence 4678899999999999999998622 222 344444
Q ss_pred cCCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 430 FKGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 430 ~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
....++|||||.+|+|.+++.... .+.......++.|++.|++|+|
T Consensus 101 ---~~~~~~v~e~~~~~~L~~~i~~~~------~~~e~~~~~~~~Qi~~al~~lH 146 (322)
T d1vzoa_ 101 ---ETKLHLILDYINGGELFTHLSQRE------RFTEHEVQIYVGEIVLALEHLH 146 (322)
T ss_dssp ---TTEEEEEECCCCSCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCceeeeeecccccHHHHHHHhcc------cccHHHHHHHHHHHHHHHHHhh
Confidence 677899999999999999998654 4566777889999999999999
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.2e-11 Score=120.88 Aligned_cols=85 Identities=13% Similarity=0.192 Sum_probs=60.6
Q ss_pred cccccCcCCCccccCceecEEEEEeC-CCce------------------------------------eEEEeccccCCCc
Q 039925 392 TVTNEFSSSNMIGQGSFGSVYKGILG-EKWT------------------------------------AGYSEGTDFKGID 434 (549)
Q Consensus 392 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~------------------------------------~g~~~~~~~~~~~ 434 (549)
..++.|...+.||+|+||+||+|+.. ++.. ++++.........
T Consensus 5 ~i~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~ 84 (345)
T d1pmea_ 5 DVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK 84 (345)
T ss_dssp CCCTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred CcCCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccc
Confidence 45667888899999999999999864 3332 3444432111122
Q ss_pred eEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 435 FKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 435 ~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+.+++|+.+|+|.+++... .+++.....++.|+++||+|||
T Consensus 85 -~~~l~~~~~~g~L~~~l~~~-------~l~~~~i~~i~~qil~al~yLH 126 (345)
T d1pmea_ 85 -DVYLVTHLMGADLYKLLKTQ-------HLSNDHICYFLYQILRGLKYIH 126 (345)
T ss_dssp -CEEEEEECCCEEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred -eEEEEEeecCCchhhhhhcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999754 4899999999999999999999
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=7.4e-11 Score=113.96 Aligned_cols=85 Identities=14% Similarity=0.179 Sum_probs=61.3
Q ss_pred cccCcCCCccccCceecEEEEEeC-CCce-------------------------------------eEEEeccc---cCC
Q 039925 394 TNEFSSSNMIGQGSFGSVYKGILG-EKWT-------------------------------------AGYSEGTD---FKG 432 (549)
Q Consensus 394 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~-------------------------------------~g~~~~~~---~~~ 432 (549)
-+.|...+.||+|+||+||+|+.. ++.. .+++.... ...
T Consensus 9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~ 88 (318)
T d3blha1 9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 88 (318)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence 467888899999999999999975 3433 23333211 011
Q ss_pred CceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 433 IDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 433 ~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+...++||||+++|.+..+.... ..++......++.|+++||.|||
T Consensus 89 ~~~~~iv~e~~~~~~~~~~~~~~------~~~~~~~~~~i~~qil~~l~~lH 134 (318)
T d3blha1 89 KGSIYLVFDFCEHDLAGLLSNVL------VKFTLSEIKRVMQMLLNGLYYIH 134 (318)
T ss_dssp --CEEEEEECCCEEHHHHHTCTT------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeccCCCccchhhhcc------cccccHHHHHHHHHHHHHHHHhc
Confidence 34579999999988877665433 35778888899999999999999
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.67 E-value=2.1e-08 Score=98.12 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=55.6
Q ss_pred CcCCCccccCceecEEEEEeC-CCce---------------------------------------------eEEEecccc
Q 039925 397 FSSSNMIGQGSFGSVYKGILG-EKWT---------------------------------------------AGYSEGTDF 430 (549)
Q Consensus 397 ~~~~~~lG~G~~g~Vy~~~~~-~~~~---------------------------------------------~g~~~~~~~ 430 (549)
|...+.||+|+||+||+|+.. ++.. ++++..
T Consensus 15 Y~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~--- 91 (362)
T d1q8ya_ 15 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH--- 91 (362)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE---
T ss_pred EEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee---
Confidence 778899999999999999874 3332 122211
Q ss_pred CCCceEEEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 431 KGIDFKAVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 431 ~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
.+.....++++++..+.......... ....+++.....++.||++||+|||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~i~~qil~al~~lh 142 (362)
T d1q8ya_ 92 KGPNGVHVVMVFEVLGENLLALIKKY---EHRGIPLIYVKQISKQLLLGLDYMH 142 (362)
T ss_dssp EETTEEEEEEEECCCCEEHHHHHHHT---TTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeeeeecccccccccccccc---cccCCcHHHHHHHHHHHHHHHHHHh
Confidence 11345567777776655433332222 2356788888899999999999999
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.1e-08 Score=87.74 Aligned_cols=81 Identities=17% Similarity=0.083 Sum_probs=36.3
Q ss_pred CCCCCCEEEeecceeeee--CCccccCCCCCCEEecccCcceecccccccccc-cceeeCCCCcCcccCch------hhh
Q 039925 128 NPSAIQVMIFKENSLEGK--FPNTLSNLRSLFYDNINRNEFSGLIPSFIFNIS-LKWNFLPENSFTGNLPL------EIG 198 (549)
Q Consensus 128 ~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-L~~L~l~~n~l~~~~p~------~~~ 198 (549)
.+++|++|+|++|+|+.. ++..+..+++|+.|+|++|.++...+-.+.... |+.|++++|++...... .+.
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~ 142 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR 142 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence 344455555555554421 122334455555555555555532221121222 55555666655432221 122
Q ss_pred hcCCCCcEee
Q 039925 199 VTLPKGRNYY 208 (549)
Q Consensus 199 ~~l~~L~~L~ 208 (549)
..+|+|+.||
T Consensus 143 ~~~P~L~~LD 152 (162)
T d1koha1 143 ERFPKLLRLD 152 (162)
T ss_dssp TTSTTCCEET
T ss_pred HHCCCCCEEC
Confidence 3566666654
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.2e-08 Score=87.40 Aligned_cols=65 Identities=18% Similarity=0.116 Sum_probs=27.7
Q ss_pred cCCCCCCEeeccccccccc--CCcccccccCccceeeecccccccccccccCCCCCCCEEEeecceee
Q 039925 78 GRLFRLEYLLLANNHFSGK--IPANLSHCSNLLTKLFICETHLSGQLLDFIGNPSAIQVMIFKENSLE 143 (549)
Q Consensus 78 ~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 143 (549)
..+++|++|+|++|+|+.. ++..+..+++| +.|+|++|.|+...+-.+....+|+.|++++|.+.
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L-~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNL-KILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTC-CCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcc-cccccccCccccchhhhhhhccccceeecCCCCcC
Confidence 3444555555555555421 11223344444 55555555544322212222334445555555444
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.79 E-value=3e-06 Score=72.39 Aligned_cols=86 Identities=17% Similarity=0.121 Sum_probs=44.7
Q ss_pred CCCCCCEEEccCC-cceec----CCccccCCCCCCEeeccccccccc----CCcccccccCccceeeecccccccc----
Q 039925 55 NFGYLRFINLVDN-NFRGE----IPEKVGRLFRLEYLLLANNHFSGK----IPANLSHCSNLLTKLFICETHLSGQ---- 121 (549)
Q Consensus 55 ~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~~L~Ls~n~l~~~---- 121 (549)
+.++|+.|+|+++ .++.. +-..+...+.|++|+|++|.+... +...+...+.| ++|+|++|.++..
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L-~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSL-RVLNVESNFLTPELLAR 91 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSC-CEEECCSSBCCHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccc-cceeeehhhcchHHHHH
Confidence 4567777777763 35421 233455566677777777766521 22233344555 5666666655432
Q ss_pred cccccCCCCCCCEEEeecce
Q 039925 122 LLDFIGNPSAIQVMIFKENS 141 (549)
Q Consensus 122 ~~~~~~~l~~L~~L~L~~n~ 141 (549)
+...+...++|++|++++|.
T Consensus 92 l~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp HHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHhCCcCCEEECCCCc
Confidence 22234444455555555443
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.77 E-value=1e-05 Score=70.67 Aligned_cols=35 Identities=9% Similarity=0.102 Sum_probs=26.9
Q ss_pred EEEEeecCCCCcccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhh
Q 039925 437 AVVFDYMQNRSLEDWPYQSNNKLKPSSLSMIRKLSTTIDVASAIEYLR 484 (549)
Q Consensus 437 ~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~ia~~va~gl~yLH 484 (549)
+++|||++++.+.+ ++......++.|+++|++|||
T Consensus 86 ~lvme~~~~~~~~~-------------l~~~~~~~i~~ql~~~l~~lH 120 (191)
T d1zara2 86 AVLMELIDAKELYR-------------VRVENPDEVLDMILEEVAKFY 120 (191)
T ss_dssp EEEEECCCCEEGGG-------------CCCSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeccccccc-------------hhhHHHHHHHHHHHHHHHHHh
Confidence 68999998765433 233445678999999999999
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.69 E-value=6.7e-06 Score=70.10 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=49.2
Q ss_pred cccEEEccccccccc----cChhhhhccccCccEEEcCCCcccccCCCcCccccCCccccCeeeccCccccc-------c
Q 039925 224 TATIIAMGGNQISGT----ITLGIKKLIFVNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLALDNNKLQG-------N 292 (549)
Q Consensus 224 ~L~~L~l~~n~l~~~----~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~Ls~N~l~~-------~ 292 (549)
+|+.|++++|.+... +...+... +.|++|+|++|.++......+...+...++|++|+|++|.+.. .
T Consensus 45 ~L~~L~Ls~n~l~~~~~~~la~~L~~n--~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~ 122 (167)
T d1pgva_ 45 HIEKFSLANTAISDSEARGLIELIETS--PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 122 (167)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHC--SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred ccceeeccccccchhHHHHHhhhhhhc--ccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence 455555555555422 12233344 6677777777766643222233445666777777777775441 1
Q ss_pred CCccccCCCCCCEEEccCCcc
Q 039925 293 LPSSLGYYQNLMELSVSRNKL 313 (549)
Q Consensus 293 ~p~~l~~l~~L~~L~Ls~N~l 313 (549)
+...+...+.|+.|+++++..
T Consensus 123 l~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 123 MMMAIEENESLLRVGISFASM 143 (167)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCccEeeCcCCCc
Confidence 334555677788888776643
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.25 E-value=1.9e-05 Score=67.09 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=37.3
Q ss_pred cCCCCCCEEEccC-Ccceec----CCccccCCCCCCEeeccccccccc----CCcccccccCccceeeecccccc
Q 039925 54 GNFGYLRFINLVD-NNFRGE----IPEKVGRLFRLEYLLLANNHFSGK----IPANLSHCSNLLTKLFICETHLS 119 (549)
Q Consensus 54 ~~l~~L~~L~L~~-n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~~L~Ls~n~l~ 119 (549)
.+.+.|++|+|++ +.++.. +-..+...++|++|+|++|.+... +-..+...+.+ +.+++++|.+.
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l-~~l~l~~~~~~ 87 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL-KSLNVESNFIS 87 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSC-CEEECCSSCCC
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccc-hhhhhcccccc
Confidence 4557777777776 345421 334455667777777777776532 12233444555 66666665554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.09 E-value=4.2e-05 Score=64.85 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=36.4
Q ss_pred cCccEEEcCCCcccccCCCcCccccCCccccCeeec--cCccccc----cCCccccCCCCCCEEEccCCcc
Q 039925 249 VNLYALTMVKNKLSGPIPHHIASSLGNLTLLTYLAL--DNNKLQG----NLPSSLGYYQNLMELSVSRNKL 313 (549)
Q Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~~l~~l~~L~~L~L--s~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l 313 (549)
+.++.+++++|.+.......+...+...++|+.++| ++|.+.. .+...+...+.|+.|+++.+..
T Consensus 74 ~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 74 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred ccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 566666666666543221122344555666765444 4555543 2344556677888887776654
|