Citrus Sinensis ID: 039926

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
MPEKENSDVVVKEPRSVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWRSEAALALGF
ccccccccccccccEEEEEEEEcccccccccEEEEEcccccccccccccEEEccccccccccccccccccccEEEEEEEccEEcccccccccccccccHHHEEccccccccccccccccccEEEEEEEcccccccccccccccccccccEEEcccEEEEEEEEEEcccccccccccccEEEEEEEccccEEEEEcccccEEEEEEEEccEEEccccccEEcccEEEEEEccccEEEEcccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHccccccc
cccccccccccccccHEEEEEEcccccccccEEEEEEccccHHcccccHHEHHccccccccccccccccccHHHHHHHcccEEEccccccccEEccccEEEEEccccEEEcccccccccccEEEEEEEcccHcccccccHccccHHHcccccccccEEEEEEEccccccccEEcccccEEEEEEEccccEEEEEcccccEEEEEEEEEEEEEcccccccccccEEEEEcccccEEEEEccccccEEEEEEcccccccEEEccccEcccHHHHHHHHHHHHHcccccccccccHHHHHHHccc
mpekensdvvvkePRSVVRKFLarpqgegmGAIVRRSIGRfelryfdpflvldefsvtapagfpdhphrgfeTVTYMLQGavthedfeghkgtigpgdlqwmtagrgivhsempaaqgtqKGLQLWINLSSKykmiepryqevsSKDIAEAAKDGIKVRVIAGEalgvkspiytrtptmyldftlkpgahlrqpiLRSWNAFVYVLEGEglfgtvksspvsaHHLLLLGSGDGLEAWNKFSKPLRFVLvggepigepvaqlgpfvmntQEEIDQTIDDFENYVNGFEKAKHWRSEAALALGF
mpekensdvvvkeprsvvrkflarpqgegmgaiVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIagealgvkspiytrTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWRSEAALALGF
MPEKENSDVVVKEPRSVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVKSSPVSAHHllllgsgdglEAWNKFSKPLRFVLVGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWRSEAALALGF
*****************VRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWR*********
***************SVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWRSE***A***
************EPRSVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWRSEAALALGF
***********KEPRSVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWR*EAALALGF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MPEKENSDVVVKEPRSVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWRSEAALALGF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query302 2.2.26 [Sep-21-2011]
Q9LPS9310 Pirin-like protein At1g50 yes no 0.993 0.967 0.684 1e-118
Q9SEE4291 Pirin-like protein OS=Sol N/A no 0.947 0.982 0.681 1e-115
Q9ZW82321 Pirin-like protein At2g43 no no 0.927 0.872 0.632 1e-105
Q9LX49287 Pirin-1 OS=Arabidopsis th no no 0.930 0.979 0.579 3e-97
O00625290 Pirin OS=Homo sapiens GN= yes no 0.930 0.968 0.561 9e-91
Q9LX45271 Putative pirin-like prote no no 0.860 0.959 0.585 1e-87
Q9D711290 Pirin OS=Mus musculus GN= yes no 0.930 0.968 0.547 1e-87
Q5M827291 Pirin OS=Rattus norvegicu yes no 0.930 0.965 0.544 4e-86
P58112276 Pirin-like protein CC_048 yes no 0.867 0.949 0.425 1e-49
Q9HZ00285 Putative quercetin 2,3-di yes no 0.884 0.936 0.367 7e-44
>sp|Q9LPS9|PIRL1_ARATH Pirin-like protein At1g50590 OS=Arabidopsis thaliana GN=At1g50590 PE=2 SV=1 Back     alignment and function desciption
 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/311 (68%), Positives = 239/311 (76%), Gaps = 11/311 (3%)

Query: 1   MPEKENSDVVVKEPRSVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAP 60
           MP  E S       R VV+K  AR   EG GA+VRRSIGRFE RYFDPFLVLDEFSV+AP
Sbjct: 1   MPISEKSSAT--NTRLVVKKLFARQLHEGFGAVVRRSIGRFEFRYFDPFLVLDEFSVSAP 58

Query: 61  AGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGT- 119
           AGFPDHPHRGFETVTYML+G + HED EGHKG I  G LQWMTAG+GIVHSEMP++    
Sbjct: 59  AGFPDHPHRGFETVTYMLEGEILHEDCEGHKGVIREGGLQWMTAGKGIVHSEMPSSNSNG 118

Query: 120 ---QKGLQLWINLSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRT 176
               KGLQLWINLSS+ K++EP YQE+ SKDIAE  KDG++VRVIAGE  GVKS I TRT
Sbjct: 119 ITHNKGLQLWINLSSRQKLVEPSYQEIESKDIAETEKDGVRVRVIAGEWNGVKSKICTRT 178

Query: 177 PTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVK--SSPVSAHHLLLLG-SGDG 233
           PTMYLDFTL PG+ + QPI   WNAFVYVL+G G FG  K   S  +AHHLL+LG  GD 
Sbjct: 179 PTMYLDFTLSPGSRISQPIPLHWNAFVYVLQGHGHFGDSKLQHSAAAAHHLLVLGLGGDM 238

Query: 234 LEAWNKFSK--PLRFVLVGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKH 291
           LEAWN      PLRF+LV GEPIGEP+ Q GPFVMNTQEEID+TIDDFEN+ NGFEKA+H
Sbjct: 239 LEAWNGSDSGLPLRFILVAGEPIGEPMVQFGPFVMNTQEEIDETIDDFENFRNGFEKARH 298

Query: 292 WRSEAALALGF 302
           W+S+AA ALG 
Sbjct: 299 WKSQAASALGL 309

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SEE4|PIRL_SOLLC Pirin-like protein OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|Q9ZW82|PIRL2_ARATH Pirin-like protein At2g43120 OS=Arabidopsis thaliana GN=At2g43120 PE=2 SV=3 Back     alignment and function description
>sp|Q9LX49|PRN1_ARATH Pirin-1 OS=Arabidopsis thaliana GN=PRN1 PE=1 SV=1 Back     alignment and function description
>sp|O00625|PIR_HUMAN Pirin OS=Homo sapiens GN=PIR PE=1 SV=1 Back     alignment and function description
>sp|Q9LX45|PIRL4_ARATH Putative pirin-like protein At3g59260 OS=Arabidopsis thaliana GN=At3g59260 PE=3 SV=1 Back     alignment and function description
>sp|Q9D711|PIR_MOUSE Pirin OS=Mus musculus GN=Pir PE=2 SV=1 Back     alignment and function description
>sp|Q5M827|PIR_RAT Pirin OS=Rattus norvegicus GN=Pir PE=1 SV=1 Back     alignment and function description
>sp|P58112|Y481_CAUCR Pirin-like protein CC_0481 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=CC_0481 PE=3 SV=1 Back     alignment and function description
>sp|Q9HZ00|Y3240_PSEAE Putative quercetin 2,3-dioxygenase PA3240 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA3240 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query302
356552737301 PREDICTED: pirin-like protein-like [Glyc 0.970 0.973 0.843 1e-146
297242517303 pirin [Carica papaya] 1.0 0.996 0.838 1e-146
255646776301 unknown [Glycine max] 0.970 0.973 0.839 1e-145
363808308301 uncharacterized protein LOC100811930 [Gl 0.996 1.0 0.814 1e-145
357494779295 Pirin-like protein [Medicago truncatula] 0.973 0.996 0.807 1e-141
356566734308 PREDICTED: pirin-like protein At1g50590- 0.983 0.964 0.782 1e-141
217073053295 unknown [Medicago truncatula] 0.973 0.996 0.803 1e-140
356527111298 PREDICTED: pirin-like protein-like [Glyc 0.983 0.996 0.795 1e-140
388506142295 unknown [Medicago truncatula] 0.973 0.996 0.797 1e-139
449465069301 PREDICTED: pirin-like protein-like [Cucu 0.996 1.0 0.824 1e-139
>gi|356552737|ref|XP_003544719.1| PREDICTED: pirin-like protein-like [Glycine max] Back     alignment and taxonomy information
 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/293 (84%), Positives = 270/293 (92%)

Query: 10  VVKEPRSVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHR 69
            + EPR V RKFLARPQ EG+GA+VRRSIGRFEL+YFDPFLVLDEFSVTAPAGFPDHPHR
Sbjct: 9   CISEPRLVARKFLARPQHEGVGAVVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHR 68

Query: 70  GFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINL 129
           GFETVTYMLQGAVTHEDFEGHKGTI  GDLQWMTAGRG+VHSEMPAAQGTQKGLQLWINL
Sbjct: 69  GFETVTYMLQGAVTHEDFEGHKGTIEAGDLQWMTAGRGLVHSEMPAAQGTQKGLQLWINL 128

Query: 130 SSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGA 189
           +SK+KMIEPRYQE+ SKDIAE   DGIKVRVIAGEALG+KSPIYTRTPTMYLDFTLKPGA
Sbjct: 129 ASKHKMIEPRYQEMLSKDIAETMIDGIKVRVIAGEALGIKSPIYTRTPTMYLDFTLKPGA 188

Query: 190 HLRQPILRSWNAFVYVLEGEGLFGTVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLV 249
           HL+Q I +SWNAFVY+LEGEG+FG  KS PV++HH+LLLG GDGLEAWNK SK LRF+LV
Sbjct: 189 HLQQLIPKSWNAFVYILEGEGVFGNQKSQPVTSHHILLLGPGDGLEAWNKSSKVLRFILV 248

Query: 250 GGEPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWRSEAALALGF 302
           GGEP+GEPV Q GPFVMNTQEEIDQTIDDFENY NGFEKA+HWRSE+A++L +
Sbjct: 249 GGEPLGEPVVQFGPFVMNTQEEIDQTIDDFENYTNGFEKARHWRSESAISLDY 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297242517|gb|ADI24922.1| pirin [Carica papaya] Back     alignment and taxonomy information
>gi|255646776|gb|ACU23860.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|363808308|ref|NP_001242501.1| uncharacterized protein LOC100811930 [Glycine max] gi|255639610|gb|ACU20099.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357494779|ref|XP_003617678.1| Pirin-like protein [Medicago truncatula] gi|355519013|gb|AET00637.1| Pirin-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356566734|ref|XP_003551584.1| PREDICTED: pirin-like protein At1g50590-like [Glycine max] Back     alignment and taxonomy information
>gi|217073053|gb|ACJ84886.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356527111|ref|XP_003532157.1| PREDICTED: pirin-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|388506142|gb|AFK41137.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449465069|ref|XP_004150251.1| PREDICTED: pirin-like protein-like [Cucumis sativus] gi|449508321|ref|XP_004163281.1| PREDICTED: pirin-like protein-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query302
TAIR|locus:2008091310 AT1G50590 [Arabidopsis thalian 0.990 0.964 0.664 2.8e-105
TAIR|locus:2041026321 AT2G43120 [Arabidopsis thalian 0.927 0.872 0.618 2.3e-94
TAIR|locus:2081187287 PRN "pirin" [Arabidopsis thali 0.930 0.979 0.569 1.1e-87
UNIPROTKB|O00625290 PIR "Pirin" [Homo sapiens (tax 0.930 0.968 0.547 3.6e-82
UNIPROTKB|E2QSR0292 PIR "Uncharacterized protein" 0.930 0.962 0.547 8.5e-81
MGI|MGI:1916906290 Pir "pirin" [Mus musculus (tax 0.930 0.968 0.533 3.3e-79
TAIR|locus:2081267271 AT3G59260 [Arabidopsis thalian 0.821 0.915 0.597 6.8e-79
RGD|1359212291 Pir "pirin (iron-binding nucle 0.930 0.965 0.530 1.4e-78
UNIPROTKB|A6QQH1289 PIR "PIR protein" [Bos taurus 0.930 0.972 0.530 6.2e-78
ASPGD|ASPL0000048935310 AN1460 [Emericella nidulans (t 0.923 0.9 0.463 1.1e-62
TAIR|locus:2008091 AT1G50590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 206/310 (66%), Positives = 231/310 (74%)

Query:     1 MPEKENSDVVVKEPRSVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAP 60
             MP  E S       R VV+K  AR   EG GA+VRRSIGRFE RYFDPFLVLDEFSV+AP
Sbjct:     1 MPISEKSSAT--NTRLVVKKLFARQLHEGFGAVVRRSIGRFEFRYFDPFLVLDEFSVSAP 58

Query:    61 AGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGT- 119
             AGFPDHPHRGFETVTYML+G + HED EGHKG I  G LQWMTAG+GIVHSEMP++    
Sbjct:    59 AGFPDHPHRGFETVTYMLEGEILHEDCEGHKGVIREGGLQWMTAGKGIVHSEMPSSNSNG 118

Query:   120 ---QKGLQLWINLSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRT 176
                 KGLQLWINLSS+ K++EP YQE+ SKDIAE  KDG++VRVIAGE  GVKS I TRT
Sbjct:   119 ITHNKGLQLWINLSSRQKLVEPSYQEIESKDIAETEKDGVRVRVIAGEWNGVKSKICTRT 178

Query:   177 PTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVK--SSPVSAHHXXXXXXXXXX 234
             PTMYLDFTL PG+ + QPI   WNAFVYVL+G G FG  K   S  +AHH          
Sbjct:   179 PTMYLDFTLSPGSRISQPIPLHWNAFVYVLQGHGHFGDSKLQHSAAAAHHLLVLGLGGDM 238

Query:   235 -EAWNKFSK--PLRFVLVGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKH 291
              EAWN      PLRF+LV GEPIGEP+ Q GPFVMNTQEEID+TIDDFEN+ NGFEKA+H
Sbjct:   239 LEAWNGSDSGLPLRFILVAGEPIGEPMVQFGPFVMNTQEEIDETIDDFENFRNGFEKARH 298

Query:   292 WRSEAALALG 301
             W+S+AA ALG
Sbjct:   299 WKSQAASALG 308
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005516 "calmodulin binding" evidence=ISS
TAIR|locus:2041026 AT2G43120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081187 PRN "pirin" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O00625 PIR "Pirin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSR0 PIR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1916906 Pir "pirin" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TAIR|locus:2081267 AT3G59260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1359212 Pir "pirin (iron-binding nuclear protein)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A6QQH1 PIR "PIR protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ASPGD|ASPL0000048935 AN1460 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O00625PIR_HUMAN1, ., 1, 3, ., 1, 1, ., 2, 40.56180.93040.9689yesno
P58112Y481_CAUCRNo assigned EC number0.42540.86750.9492yesno
Q9LPS9PIRL1_ARATHNo assigned EC number0.68480.99330.9677yesno
Q9HZ00Y3240_PSEAE1, ., 1, 3, ., 1, 1, ., 2, 40.36780.88410.9368yesno
Q9D711PIR_MOUSE1, ., 1, 3, ., 1, 1, ., 2, 40.54770.93040.9689yesno
Q9SEE4PIRL_SOLLCNo assigned EC number0.68180.94700.9828N/Ano
Q5M827PIR_RAT1, ., 1, 3, ., 1, 1, ., 2, 40.54410.93040.9656yesno
Q9KKY1Y3769_VIBCH1, ., 1, 3, ., 1, 1, ., 2, 40.37180.85430.9148yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027223001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (298 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query302
COG1741276 COG1741, COG1741, Pirin-related protein [General f 4e-75
pfam02678107 pfam02678, Pirin, Pirin 2e-43
pfam05726102 pfam05726, Pirin_C, Pirin C-terminal cupin domain 3e-37
>gnl|CDD|224655 COG1741, COG1741, Pirin-related protein [General function prediction only] Back     alignment and domain information 
 Score =  231 bits (590), Expect = 4e-75
 Identities = 110/273 (40%), Positives = 148/273 (54%), Gaps = 13/273 (4%)

Query: 15  RSVVRKFLARPQGEGMGAIVRRSIG-RFELRYFDPFLVLDEFS--VTAP-AGFPDHPHRG 70
           R+ + + +    G+ +G  + RS G  ++     PFL LD     V AP  GFP HPHRG
Sbjct: 5   RTAIERGIGHATGDWLGVRLTRSFGPYYDPALVGPFLFLDVIGPDVLAPGRGFPPHPHRG 64

Query: 71  FETVTYMLQGAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQK--GLQLWIN 128
            ETVTY+L G + H D  G+KG I PGD+QWMTAG GIVHSEM      +   GLQLW+N
Sbjct: 65  LETVTYVLDGEIEHRDSLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVN 124

Query: 129 LSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPG 188
           L +  KMI PRYQ ++  D     + G+  RVIAG   G+ SP+   +   Y+D  L+ G
Sbjct: 125 LPAADKMIAPRYQHLAFPDEIPRVELGLTARVIAGRDGGLSSPVRQDSLH-YVDLRLEAG 183

Query: 189 AHLRQPILRSWNAFVYVLEGEGLFGTVKSSPVSAHHLLLL-GSGDGLEAWNKFSKPLRFV 247
           A L+ P      A++YV+EG                L +L G    L A        R +
Sbjct: 184 ARLQLP-PAGRRAYLYVIEGTLEVNGQ--HETDGDGLAILDGDEITLVA--DSPAGARVL 238

Query: 248 LVGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFE 280
           L+ G P+GEP+   GPFVMN++EEI+Q   D+ 
Sbjct: 239 LLDGPPLGEPIVIYGPFVMNSKEEIEQAKRDWR 271

Length = 276
>gnl|CDD|217181 pfam02678, Pirin, Pirin Back     alignment and domain information
>gnl|CDD|203319 pfam05726, Pirin_C, Pirin C-terminal cupin domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 302
COG1741276 Pirin-related protein [General function prediction 100.0
PF02678107 Pirin: Pirin; InterPro: IPR003829 This entry repre 100.0
PF05726104 Pirin_C: Pirin C-terminal cupin domain; InterPro: 99.97
PRK11171266 hypothetical protein; Provisional 98.95
TIGR03404367 bicupin_oxalic bicupin, oxalate decarboxylase fami 98.62
TIGR03214260 ura-cupin putative allantoin catabolism protein. T 98.59
PF0788371 Cupin_2: Cupin domain; InterPro: IPR013096 This fa 97.31
PRK13290125 ectC L-ectoine synthase; Reviewed 97.27
PF0788371 Cupin_2: Cupin domain; InterPro: IPR013096 This fa 97.17
TIGR03214260 ura-cupin putative allantoin catabolism protein. T 97.16
smart00835146 Cupin_1 Cupin. This family represents the conserve 96.79
PRK11171266 hypothetical protein; Provisional 96.55
PRK09943185 DNA-binding transcriptional repressor PuuR; Provis 96.29
TIGR02451215 anti_sig_ChrR anti-sigma factor, putative, ChrR fa 96.15
PRK13290125 ectC L-ectoine synthase; Reviewed 95.99
COG1917131 Uncharacterized conserved protein, contains double 95.91
COG3257264 GlxB Uncharacterized protein, possibly involved in 95.86
PF1297391 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_ 95.61
COG4101142 Predicted mannose-6-phosphate isomerase [Carbohydr 95.47
PF1297391 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_ 95.28
TIGR03404367 bicupin_oxalic bicupin, oxalate decarboxylase fami 95.27
smart00835146 Cupin_1 Cupin. This family represents the conserve 94.92
PF00190144 Cupin_1: Cupin; InterPro: IPR006045 This family re 94.51
PRK10371302 DNA-binding transcriptional regulator MelR; Provis 93.84
TIGR01479468 GMP_PMI mannose-1-phosphate guanylyltransferase/ma 93.55
COG3257264 GlxB Uncharacterized protein, possibly involved in 93.42
COG1917131 Uncharacterized conserved protein, contains double 93.19
PF1169985 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B. 93.08
COG0662127 {ManC} Mannose-6-phosphate isomerase [Carbohydrate 93.05
COG3837161 Uncharacterized conserved protein, contains double 93.04
PF0589974 Cupin_3: Protein of unknown function (DUF861); Int 93.01
TIGR01479468 GMP_PMI mannose-1-phosphate guanylyltransferase/ma 93.0
PRK15460478 cpsB mannose-1-phosphate guanyltransferase; Provis 92.57
PF01050151 MannoseP_isomer: Mannose-6-phosphate isomerase; In 92.23
PRK09943185 DNA-binding transcriptional repressor PuuR; Provis 92.15
COG0662127 {ManC} Mannose-6-phosphate isomerase [Carbohydrate 91.41
PF02311136 AraC_binding: AraC-like ligand binding domain; Int 90.59
TIGR02451215 anti_sig_ChrR anti-sigma factor, putative, ChrR fa 90.52
PF04962 261 KduI: KduI/IolB family; InterPro: IPR021120 The Kd 89.45
TIGR02272335 gentisate_1_2 gentisate 1,2-dioxygenase. This fami 88.4
PF14499251 DUF4437: Domain of unknown function (DUF4437); PDB 88.01
PF06249152 EutQ: Ethanolamine utilisation protein EutQ; Inter 87.96
PF05962184 HutD: HutD; InterPro: IPR010282 This entry contain 87.87
COG4101142 Predicted mannose-6-phosphate isomerase [Carbohydr 87.57
COG3837161 Uncharacterized conserved protein, contains double 87.5
PRK10296278 DNA-binding transcriptional regulator ChbR; Provis 87.24
COG4766176 EutQ Ethanolamine utilization protein [Amino acid 87.04
PRK04190191 glucose-6-phosphate isomerase; Provisional 86.7
PF0589974 Cupin_3: Protein of unknown function (DUF861); Int 83.67
COG3450116 Predicted enzyme of the cupin superfamily [General 83.06
PRK15460478 cpsB mannose-1-phosphate guanyltransferase; Provis 82.6
PF1114263 DUF2917: Protein of unknown function (DUF2917); In 81.5
PF00190144 Cupin_1: Cupin; InterPro: IPR006045 This family re 80.12
>COG1741 Pirin-related protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.5e-72  Score=516.38  Aligned_cols=268  Identities=40%  Similarity=0.698  Sum_probs=235.3

Q ss_pred             eeccceeeEEeeCCCcCCCCceEEEeecCCCcccCC-CCeEEeeccc---cCCCCCCCCCCCCCceEEEEEceeeEEeec
Q 039926           11 VKEPRSVVRKFLARPQGEGMGAIVRRSIGRFELRYF-DPFLVLDEFS---VTAPAGFPDHPHRGFETVTYMLQGAVTHED   86 (302)
Q Consensus        11 ~~~~r~i~~~~~~~~~~~G~g~~v~r~~~~~~~~~~-~Pf~~ld~~~---~~~~~gf~~HPHrg~EivTyvl~G~l~H~D   86 (302)
                      |+..|.+.+......+.+|.|....|.++......+ +||++||++.   +.|+.+|++|||||||||||||+|+++|+|
T Consensus         1 m~~~r~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~~~pF~~ld~~~~~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrD   80 (276)
T COG1741           1 MITIRTAIERGIGHATGDWLGVRLTRSFGPYYDPALVGPFLFLDVIGPDVLAPGRGFPPHPHRGLETVTYVLDGEIEHRD   80 (276)
T ss_pred             CccchhHHHhCcccccCCCCCeeEEEEecCCcCccccCCccceeecccccccCCCcCCCCCCCCcEEEEEEEccEEEEee
Confidence            344566666665666777655555566655444455 9999999988   567778999999999999999999999999


Q ss_pred             CCCCeeeeCCCceEEEeCCCCeEEEeeeC--CCCceeEEEEEeecccccCCCCCceeeec-CcccceeecCCeEEEEEec
Q 039926           87 FEGHKGTIGPGDLQWMTAGRGIVHSEMPA--AQGTQKGLQLWINLSSKYKMIEPRYQEVS-SKDIAEAAKDGIKVRVIAG  163 (302)
Q Consensus        87 S~Gn~~~i~~G~vQwmtAGsGI~HsE~~~--~~~~~~~lQiWinlP~~~k~~~P~y~~~~-~~~ip~~~~~g~~~rviaG  163 (302)
                      |+||+++|+||||||||||+||+|||+|.  .+.++++||||||||++.|+.+|+||++. ++++|.... |.++||++|
T Consensus        81 S~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~lP~~~k~~~P~yq~~~~~~~~p~~~~-g~~~rvi~G  159 (276)
T COG1741          81 SLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVNLPAADKMIAPRYQHLAFPDEIPRVEL-GLTARVIAG  159 (276)
T ss_pred             cCCceeeecccceeEEcCCCceeecccCCccCCCccceeeeecCCchhhccCCcccccccCcccCceeec-ceEEEEecc
Confidence            99999999999999999999999999997  47789999999999999999999999999 889998877 899999999


Q ss_pred             CCCCCcCCccccCCcEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEcCCCCce-ecCCceEEEcCCCeEEEEecCCC
Q 039926          164 EALGVKSPIYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVKSSP-VSAHHLLLLGSGDGLEAWNKFSK  242 (302)
Q Consensus       164 ~~~g~~sp~~~~~~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~~~~~~~-l~~~d~~~l~~~~~l~l~a~~~~  242 (302)
                      ++++..+|+...+ +.++|+.|++|+++.++ |+++++||||++|.++|+|   .. +....++++ +++.+++++.+..
T Consensus       160 ~~~g~~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~g---~~~~~~~~l~i~-~g~~i~l~a~~~~  233 (276)
T COG1741         160 RDGGLSSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVNG---QHETDGDGLAIL-DGDEITLVADSPA  233 (276)
T ss_pred             ccCCcccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEcc---cccccccceEEe-cCCeEEEEecCCC
Confidence            9988899999999 99999999999999999 9999999999999999998   55 444444555 4888888886556


Q ss_pred             CeEEEEecccccCCceeecCCCccCCHHHHHHHHHHHhcccCC
Q 039926          243 PLRFVLVGGEPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNG  285 (302)
Q Consensus       243 ~a~~ll~~g~P~~epi~~~GpfVm~t~~ei~~A~~dy~~g~~g  285 (302)
                      +|++|||+|+|++||++.||||||||+|||+||++|||+|+|.
T Consensus       234 ~a~vLL~~g~P~~~~~~~~g~fV~~s~e~i~~a~~~~~~g~f~  276 (276)
T COG1741         234 GARVLLLDGPPLGEPIVIYGPFVMNSKEEIEQAKRDWREGRFP  276 (276)
T ss_pred             CeEEEEEcCCCCCCceeEECCcccCCHHHHHHHHHHHHcCCCC
Confidence            7999999999999999999999999999999999999999874

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes Back     alignment and domain information
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes Back     alignment and domain information
>PRK11171 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family Back     alignment and domain information
>TIGR03214 ura-cupin putative allantoin catabolism protein Back     alignment and domain information
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) Back     alignment and domain information
>PRK13290 ectC L-ectoine synthase; Reviewed Back     alignment and domain information
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) Back     alignment and domain information
>TIGR03214 ura-cupin putative allantoin catabolism protein Back     alignment and domain information
>smart00835 Cupin_1 Cupin Back     alignment and domain information
>PRK11171 hypothetical protein; Provisional Back     alignment and domain information
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional Back     alignment and domain information
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family Back     alignment and domain information
>PRK13290 ectC L-ectoine synthase; Reviewed Back     alignment and domain information
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] Back     alignment and domain information
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only] Back     alignment and domain information
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A Back     alignment and domain information
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A Back     alignment and domain information
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family Back     alignment and domain information
>smart00835 Cupin_1 Cupin Back     alignment and domain information
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel) Back     alignment and domain information
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional Back     alignment and domain information
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Back     alignment and domain information
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only] Back     alignment and domain information
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] Back     alignment and domain information
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B Back     alignment and domain information
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] Back     alignment and domain information
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown Back     alignment and domain information
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Back     alignment and domain information
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5 Back     alignment and domain information
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional Back     alignment and domain information
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC Back     alignment and domain information
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family Back     alignment and domain information
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB) Back     alignment and domain information
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase Back     alignment and domain information
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A Back     alignment and domain information
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine Back     alignment and domain information
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12 Back     alignment and domain information
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] Back     alignment and domain information
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional Back     alignment and domain information
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism] Back     alignment and domain information
>PRK04190 glucose-6-phosphate isomerase; Provisional Back     alignment and domain information
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown Back     alignment and domain information
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only] Back     alignment and domain information
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria Back     alignment and domain information
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query302
3acl_A296 Crystal Structure Of Human Pirin In Complex With Tr 3e-88
1j1l_A290 Crystal Structure Of Human Pirin: A Bcl-3 And Nucle 1e-84
2p17_A277 Crystal Structure Of Gk1651 From Geobacillus Kausto 1e-47
1tq5_A242 Crystal Structure Of Yhhw From Escherichia Coli Len 2e-10
>pdb|3ACL|A Chain A, Crystal Structure Of Human Pirin In Complex With Triphenyl Compound Length = 296 Back     alignment and structure 
Iteration: 1

 Score =  321 bits (823), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 155/283 (54%), Positives = 196/283 (69%), Gaps = 2/283 (0%)
Query: 15  RSVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETV 74
           + V    L+R Q EG+GA VRRSIGR EL+  DPFL+ DEF    P GFPDHPHRGFETV
Sbjct: 11  KKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETV 70
Query: 75  TYMLQG-AVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKY 133
           +Y+L+G ++ HEDF GH G + PGDLQWMTAGRGI+H+EMP ++    GLQLW+NL S  
Sbjct: 71  SYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSSE 130
Query: 134 KMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLRQ 193
           KM+EP+YQE+ S++I + +KDG+ V VI+GEALG+KS +YTRTPT+YLDF L PGA   Q
Sbjct: 131 KMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQ 190
Query: 194 PILRSWNAFVYVLEGEGLFGTVKS-SPVSAHHXXXXXXXXXXEAWNKFSKPLRFVLVGGE 252
           PI + W +F+Y + G+   G   +   +  HH          +  NK  K   FVL+ GE
Sbjct: 191 PIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGE 250
Query: 253 PIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWRSE 295
           P+ EPV Q GPFVMNT EEI Q I DF N  NGFE+AK W+S+
Sbjct: 251 PLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSK 293
>pdb|1J1L|A Chain A, Crystal Structure Of Human Pirin: A Bcl-3 And Nuclear Factor I Interacting Protein And A Cupin Superfamily Member Length = 290 Back     alignment and structure
>pdb|2P17|A Chain A, Crystal Structure Of Gk1651 From Geobacillus Kaustophilus Length = 277 Back     alignment and structure
>pdb|1TQ5|A Chain A, Crystal Structure Of Yhhw From Escherichia Coli Length = 242 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query302
1j1l_A290 Pirin; beta sandwich, cupin, iron, metatl binding 1e-162
2p17_A277 Pirin-like protein; GK1651, structural genomics, s 1e-148
1tq5_A242 Protein YHHW; bicupin, pirin, montreal-kingston ba 8e-57
2vec_A256 YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe 6e-40
>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A* Length = 290 Back     alignment and structure
 Score =  452 bits (1164), Expect = e-162
 Identities = 159/286 (55%), Positives = 202/286 (70%), Gaps = 2/286 (0%)

Query: 12  KEPRSVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGF 71
              + V    L+R Q EG+GA VRRSIGR EL+  DPFL+ DEF    P GFPDHPHRGF
Sbjct: 2   GSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGF 61

Query: 72  ETVTYMLQG-AVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLS 130
           ETV+Y+L+G ++ HEDF GH G + PGDLQWMTAGRGI+H+EMP ++    GLQLW+NL 
Sbjct: 62  ETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLR 121

Query: 131 SKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAH 190
           S  KM+EP+YQE+ S++I + +KDG+ V VI+GEALG+KS +YTRTPT+YLDF L PGA 
Sbjct: 122 SSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAK 181

Query: 191 LRQPILRSWNAFVYVLEGEGLFGTVKS-SPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLV 249
             QPI + W +F+Y + G+   G   +   +  HH  +LG GD ++  NK  K   FVL+
Sbjct: 182 HSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLI 241

Query: 250 GGEPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWRSE 295
            GEP+ EPV Q GPFVMNT EEI Q I DF N  NGFE+AK W+S+
Sbjct: 242 AGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSK 287
>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus} Length = 277 Back     alignment and structure
>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12 Length = 242 Back     alignment and structure
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli} Length = 256 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query302
1j1l_A290 Pirin; beta sandwich, cupin, iron, metatl binding 100.0
2p17_A277 Pirin-like protein; GK1651, structural genomics, s 100.0
1tq5_A242 Protein YHHW; bicupin, pirin, montreal-kingston ba 100.0
2vec_A256 YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe 100.0
1sq4_A278 GLXB, glyoxylate-induced protein; structural genom 98.89
1rc6_A261 Hypothetical protein YLBA; structural genomics, NY 98.88
1sef_A274 Conserved hypothetical protein; structural genomic 98.88
3rns_A227 Cupin 2 conserved barrel domain protein; structura 98.88
1sfn_A246 Conserved hypothetical protein; structural genomic 98.8
3h7j_A243 Bacilysin biosynthesis protein BACB; YWFC, bacilys 98.73
4e2q_A266 Ureidoglycine aminohydrolase; BI-cupin, manganese 98.64
2vqa_A361 SLL1358 protein, MNCA; periplasmic binding protein 98.63
1j58_A385 YVRK protein; cupin, decarboxyklase, oxalate, mang 98.36
1y3t_A337 Hypothetical protein YXAG; BI cupin, dioxygenase, 98.32
3o14_A223 Anti-ecfsigma factor, CHRR; cupin, structural geno 98.19
3bu7_A394 Gentisate 1,2-dioxygenase; cupin domain, oxidoredu 97.92
3ht1_A145 REMF protein; cupin fold, Zn-binding, antibiotic b 97.87
2fqp_A97 Hypothetical protein BP2299; double-stranded beta- 97.83
1o4t_A133 Putative oxalate decarboxylase; double-stranded be 97.8
1uij_A416 Beta subunit of beta conglycinin; double-stranded 97.78
2ea7_A 434 7S globulin-1; beta barrel, cupin superfamily, pla 97.72
2cav_A445 Protein (canavalin); vicilin, 7S SEED protein, dom 97.57
3h8u_A125 Uncharacterized conserved protein with double-STR 97.42
4i4a_A128 Similar to unknown protein; structural genomics, P 97.35
1vj2_A126 Novel manganese-containing cupin TM1459; structura 97.33
1v70_A105 Probable antibiotics synthesis protein; structural 97.27
2ozi_A98 Hypothetical protein RPA4178; APC6210, putative pr 97.26
1v70_A105 Probable antibiotics synthesis protein; structural 97.25
1juh_A350 Quercetin 2,3-dioxygenase; cupin, glycoprotein, be 97.25
3i7d_A163 Sugar phosphate isomerase; YP_168127.1, structural 97.25
2d40_A354 Z3393, putative gentisate 1,2-dioxygenase; gentisi 97.24
3l2h_A162 Putative sugar phosphate isomerase; AFE_0303, stru 97.22
2e9q_A459 11S globulin subunit beta; cucubitin, pumpkin SEED 97.09
1sfn_A246 Conserved hypothetical protein; structural genomic 97.09
3lag_A98 Uncharacterized protein RPA4178; functionally unkn 97.07
3es1_A172 Cupin 2, conserved barrel domain protein; YP_00116 97.06
2b8m_A117 Hypothetical protein MJ0764; structural genomics, 97.02
2phl_A397 Phaseolin; plant SEED storage protein(vicilin); HE 97.0
3ibm_A167 Cupin 2, conserved barrel domain protein; cupin 2 96.91
3qac_A465 11S globulin SEED storage protein; 11S SEED storag 96.87
3kgz_A156 Cupin 2 conserved barrel domain protein; metallopr 96.87
3lwc_A119 Uncharacterized protein; structural genomics, unkn 96.84
2q30_A110 Uncharacterized protein; double-stranded beta-heli 96.84
2gu9_A113 Tetracenomycin polyketide synthesis protein; X-RAY 96.83
3cew_A125 Uncharacterized cupin protein; all beta-protein, j 96.82
2pfw_A116 Cupin 2, conserved barrel domain protein; cupin do 96.82
1sef_A274 Conserved hypothetical protein; structural genomic 96.8
3nw4_A368 Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc 96.69
2oa2_A148 BH2720 protein; 10175341, structural genomics, joi 96.66
2gu9_A113 Tetracenomycin polyketide synthesis protein; X-RAY 96.62
2vpv_A166 Protein MIF2, MIF2P; nucleus, mitosis, centromere, 96.6
3h8u_A125 Uncharacterized conserved protein with double-STR 96.54
4e2q_A266 Ureidoglycine aminohydrolase; BI-cupin, manganese 96.5
1rc6_A261 Hypothetical protein YLBA; structural genomics, NY 96.49
1vj2_A126 Novel manganese-containing cupin TM1459; structura 96.48
2fqp_A97 Hypothetical protein BP2299; double-stranded beta- 96.44
4e2g_A126 Cupin 2 conserved barrel domain protein; MCSG, PSI 96.4
3jzv_A166 Uncharacterized protein RRU_A2000; structural geno 96.37
1dgw_A178 Canavalin; duplicated swiss-roll beta barrels, loo 96.35
2pfw_A116 Cupin 2, conserved barrel domain protein; cupin do 96.35
1yhf_A115 Hypothetical protein SPY1581; structural genomics, 96.28
3kgz_A156 Cupin 2 conserved barrel domain protein; metallopr 96.28
1o4t_A133 Putative oxalate decarboxylase; double-stranded be 96.27
1sq4_A278 GLXB, glyoxylate-induced protein; structural genom 96.26
3es1_A172 Cupin 2, conserved barrel domain protein; YP_00116 96.26
1fi2_A201 Oxalate oxidase, germin; beta-jellyroll, oxidoredu 96.25
1fi2_A201 Oxalate oxidase, germin; beta-jellyroll, oxidoredu 96.21
2vqa_A 361 SLL1358 protein, MNCA; periplasmic binding protein 96.21
3jzv_A166 Uncharacterized protein RRU_A2000; structural geno 96.18
2ea7_A 434 7S globulin-1; beta barrel, cupin superfamily, pla 96.18
1y3t_A 337 Hypothetical protein YXAG; BI cupin, dioxygenase, 96.16
3ht1_A145 REMF protein; cupin fold, Zn-binding, antibiotic b 96.15
2o1q_A145 Putative acetyl/propionyl-COA carboxylase, alpha; 96.1
1lr5_A163 Auxin binding protein 1; beta jellyroll, double st 96.09
1y9q_A192 Transcriptional regulator, HTH_3 family; transcrip 96.07
3ibm_A167 Cupin 2, conserved barrel domain protein; cupin 2 96.07
3i7d_A163 Sugar phosphate isomerase; YP_168127.1, structural 96.05
1lr5_A163 Auxin binding protein 1; beta jellyroll, double st 96.04
3fjs_A114 Uncharacterized protein with RMLC-like cupin fold; 96.04
2ozi_A98 Hypothetical protein RPA4178; APC6210, putative pr 95.93
2f4p_A147 Hypothetical protein TM1010; double-stranded beta- 95.89
2q30_A110 Uncharacterized protein; double-stranded beta-heli 95.89
4e2g_A126 Cupin 2 conserved barrel domain protein; MCSG, PSI 95.87
1fxz_A476 Glycinin G1; proglycinin, legumin, SEED storage pr 95.86
2oa2_A148 BH2720 protein; 10175341, structural genomics, joi 95.81
3l2h_A162 Putative sugar phosphate isomerase; AFE_0303, stru 95.8
3h7j_A243 Bacilysin biosynthesis protein BACB; YWFC, bacilys 95.78
2bnm_A198 Epoxidase; oxidoreductase, cupin, HTH, cation-depe 95.77
1yhf_A115 Hypothetical protein SPY1581; structural genomics, 95.77
2xlg_A239 SLL1785 protein, CUCA; metal binding protein, cupi 95.76
3myx_A238 Uncharacterized protein pspto_0244; protein of unk 95.73
2bnm_A198 Epoxidase; oxidoreductase, cupin, HTH, cation-depe 95.69
1x82_A190 Glucose-6-phosphate isomerase; cupin superfamily, 95.65
2b8m_A117 Hypothetical protein MJ0764; structural genomics, 95.6
3c3v_A510 Arachin ARAH3 isoform; peanut allergen, allergy, g 95.35
3fjs_A114 Uncharacterized protein with RMLC-like cupin fold; 95.34
2f4p_A147 Hypothetical protein TM1010; double-stranded beta- 95.24
2o8q_A134 Hypothetical protein; cpuin-like fold, structural 95.23
1y9q_A192 Transcriptional regulator, HTH_3 family; transcrip 95.16
1j58_A 385 YVRK protein; cupin, decarboxyklase, oxalate, mang 95.16
3ebr_A159 Uncharacterized RMLC-like cupin; structural genomi 95.04
2pyt_A133 Ethanolamine utilization protein EUTQ; structural 95.04
2q1z_B195 Anti-sigma factor CHRR, transcriptional activator; 94.98
2i45_A107 Hypothetical protein; neisseria meningitidis cupin 94.85
3ksc_A496 LEGA class, prolegumin; PEA prolegumin, 11S SEED s 94.77
4b29_A217 Dimethylsulfoniopropionate lyase; hydrolase, dimet 94.76
2d40_A 354 Z3393, putative gentisate 1,2-dioxygenase; gentisi 94.74
3lwc_A119 Uncharacterized protein; structural genomics, unkn 94.72
1uij_A 416 Beta subunit of beta conglycinin; double-stranded 94.72
3cew_A125 Uncharacterized cupin protein; all beta-protein, j 94.64
3lag_A98 Uncharacterized protein RPA4178; functionally unkn 94.63
3kgl_A466 Cruciferin; 11S SEED globulin, rapeseed, SEED stor 94.52
4i4a_A128 Similar to unknown protein; structural genomics, P 94.5
3rns_A227 Cupin 2 conserved barrel domain protein; structura 94.49
3s7i_A 418 Allergen ARA H 1, clone P41B; bicupin, vicilin, st 94.48
2ozj_A114 Cupin 2, conserved barrel; cupin superfamily prote 94.36
2phl_A 397 Phaseolin; plant SEED storage protein(vicilin); HE 93.74
2cav_A 445 Protein (canavalin); vicilin, 7S SEED protein, dom 93.69
2d5f_A493 Glycinin A3B4 subunit; soybean, globulin, 11S,SEED 93.43
2ozj_A114 Cupin 2, conserved barrel; cupin superfamily prote 93.32
2o1q_A145 Putative acetyl/propionyl-COA carboxylase, alpha; 93.14
1x82_A190 Glucose-6-phosphate isomerase; cupin superfamily, 93.12
3d82_A102 Cupin 2, conserved barrel domain protein; structur 92.97
4axo_A151 EUTQ, ethanolamine utilization protein; structural 92.87
3c3v_A510 Arachin ARAH3 isoform; peanut allergen, allergy, g 92.8
3cjx_A165 Protein of unknown function with A cupin-like FOL; 92.66
1fxz_A476 Glycinin G1; proglycinin, legumin, SEED storage pr 92.63
3fz3_A531 Prunin; TREE NUT allergen, allergy, amandin, almon 92.56
4h7l_A157 Uncharacterized protein; structural genomics, PSI- 92.27
3ebr_A159 Uncharacterized RMLC-like cupin; structural genomi 92.21
2o8q_A134 Hypothetical protein; cpuin-like fold, structural 92.08
2d5f_A493 Glycinin A3B4 subunit; soybean, globulin, 11S,SEED 91.94
1dgw_A178 Canavalin; duplicated swiss-roll beta barrels, loo 91.79
1o5u_A101 Novel thermotoga maritima enzyme TM1112; cupin, st 91.47
2qjv_A 270 Uncharacterized IOLB-like protein; structural geno 91.31
2gm6_A208 Cysteine dioxygenase type I; structural genomics, 90.75
2vpv_A166 Protein MIF2, MIF2P; nucleus, mitosis, centromere, 90.48
2i45_A107 Hypothetical protein; neisseria meningitidis cupin 90.2
3bcw_A123 Uncharacterized protein; structural genomics, join 89.3
1o5u_A101 Novel thermotoga maritima enzyme TM1112; cupin, st 89.03
1vr3_A191 Acireductone dioxygenase; 13543033, structural gen 88.94
3bu7_A394 Gentisate 1,2-dioxygenase; cupin domain, oxidoredu 88.93
2opk_A112 Hypothetical protein; putative mannose-6-phosphate 88.37
4axo_A151 EUTQ, ethanolamine utilization protein; structural 88.31
2pyt_A133 Ethanolamine utilization protein EUTQ; structural 88.25
2xlg_A239 SLL1785 protein, CUCA; metal binding protein, cupi 88.11
2qnk_A286 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol 87.55
3cjx_A165 Protein of unknown function with A cupin-like FOL; 87.13
3eln_A200 Cysteine dioxygenase type 1; peroxysulfenate, non- 86.92
3d82_A102 Cupin 2, conserved barrel domain protein; structur 86.73
3bal_A153 Acetylacetone-cleaving enzyme; jelly roll, tetrame 86.33
3es4_A116 Uncharacterized protein DUF861 with A RMLC-like C; 86.01
2e9q_A 459 11S globulin subunit beta; cucubitin, pumpkin SEED 85.98
3nw4_A 368 Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc 85.89
3fz3_A531 Prunin; TREE NUT allergen, allergy, amandin, almon 84.98
3eqe_A171 Putative cystein deoxygenase; YUBC, SR112, NESG, s 84.85
3uss_A211 Putative uncharacterized protein; cupin, three his 84.8
1zrr_A179 E-2/E-2' protein; nickel, cupin, beta helix, methi 84.09
3s7i_A 418 Allergen ARA H 1, clone P41B; bicupin, vicilin, st 82.89
4h7l_A157 Uncharacterized protein; structural genomics, PSI- 82.55
2qdr_A303 Uncharacterized protein; double-stranded beta-heli 82.52
2arc_A164 ARAC, arabinose operon regulatory protein; transcr 82.51
2q1z_B195 Anti-sigma factor CHRR, transcriptional activator; 82.02
4b29_A217 Dimethylsulfoniopropionate lyase; hydrolase, dimet 81.82
3bcw_A123 Uncharacterized protein; structural genomics, join 81.25
3es4_A116 Uncharacterized protein DUF861 with A RMLC-like C; 80.08
>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A* Back     alignment and structure
Probab=100.00  E-value=2.4e-88  Score=630.25  Aligned_cols=287  Identities=55%  Similarity=0.987  Sum_probs=268.9

Q ss_pred             eccceeeEEeeCCCcCCCCceEEEeecCCCcccCCCCeEEeeccccCCCCCCCCCCCCCceEEEEEc-eeeEEeecCCCC
Q 039926           12 KEPRSVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYML-QGAVTHEDFEGH   90 (302)
Q Consensus        12 ~~~r~i~~~~~~~~~~~G~g~~v~r~~~~~~~~~~~Pf~~ld~~~~~~~~gf~~HPHrg~EivTyvl-~G~l~H~DS~Gn   90 (302)
                      +..|+|.+++.++++.+|+||+|+|++|.+....||||+||||+.+.++.||++||||||||||||+ +|+++|+||+||
T Consensus         2 ~~~r~i~~~~~~~~~~~G~G~~v~R~~~~~~~~~~gpf~~ld~~~~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~DS~Gn   81 (290)
T 1j1l_A            2 GSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGH   81 (290)
T ss_dssp             -CCCCEEEEEECCEEEETBTEEEEECTTSTTCCCCTTEEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEEETTSC
T ss_pred             CccceeeeEEcCCccccCCCeEEEEeCCCccccccCcEEEEEccccCCCCCCCCCCCCCeEEEEEECcceEEEEeeCCCC
Confidence            3358999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             eeeeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEeecccccCCCCCceeeecCcccceeecCCeEEEEEecCCCCCcC
Q 039926           91 KGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKS  170 (302)
Q Consensus        91 ~~~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWinlP~~~k~~~P~y~~~~~~~ip~~~~~g~~~rviaG~~~g~~s  170 (302)
                      .++|+||||||||||+||+|||+|..++++|+||||||||++.|+.+|+|+++.+++||....+|.++||++|++.|.++
T Consensus        82 ~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQlWvnLP~~~k~~~P~y~~~~~~~ip~~~~~g~~v~viaG~~~g~~~  161 (290)
T 1j1l_A           82 TGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKS  161 (290)
T ss_dssp             EEEECTTCEEEEECTTCEEEEEEECSSSCEEEEEEEEECCGGGTTSCCEEEEECGGGSCCCEETTEEEEEEESEETTEEC
T ss_pred             ceEECCCcEEEEeCCCCEEEEeEcCCCCCEEEEEEEecCChhhcCCCCcceecccccCCcEeECCEEEEEEcCCcccCCC
Confidence            99999999999999999999999987789999999999999889999999999999999876678899999999888889


Q ss_pred             CccccCCcEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEcCCCC-ceecCCceEEEcCCCeEEEEecCCCCeEEEEe
Q 039926          171 PIYTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVKS-SPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLV  249 (302)
Q Consensus       171 p~~~~~~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~~~~~-~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~  249 (302)
                      |+.++++++++|++|++|+++++++|+++++|+||++|+++|++.+. ..+.++.++.+..++.++|++.+.++++||||
T Consensus       162 p~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~lyv~~G~v~v~g~~~~~~~~~~~~~~l~~gd~~~i~~~a~~~a~~LLl  241 (290)
T 1j1l_A          162 KVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLI  241 (290)
T ss_dssp             CCCCSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEESCTTSCEEECTTEEEEECSCSEEEEECCSSSCEEEEEE
T ss_pred             ceeccCCcEEEEEEECCCCEEEeecCCCCEEEEEEEeCeEEECCcccceeccCceEEEecCCCEEEEEEcCCCCcEEEEE
Confidence            99999999999999999999999999999999999999999987211 46888888888888999998533468999999


Q ss_pred             cccccCCceeecCCCccCCHHHHHHHHHHHhcccCCCCCCCcchhhhcc
Q 039926          250 GGEPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWRSEAAL  298 (302)
Q Consensus       250 ~g~P~~epi~~~GpfVm~t~~ei~~A~~dy~~g~~g~~~~~~~~~~~~~  298 (302)
                      +|+||+|||++||||||||++||+||++||++|+|||+++++|+|+|++
T Consensus       242 ~G~Pl~epi~~~gpFVmnt~eeI~qA~~d~~~g~~~f~~~~~w~s~~~~  290 (290)
T 1j1l_A          242 AGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN  290 (290)
T ss_dssp             EECCCCSCCEEETTEEESSHHHHHHHHHHHHTTCTTCGGGSSCCCSTTC
T ss_pred             EcccCCCCEEecCCeeeCCHHHHHHHHHHHHhccCCcccCCCCceecCC
Confidence            9999999999999999999999999999999999999999999999974
>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus} Back     alignment and structure
>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12 Back     alignment and structure
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli} Back     alignment and structure
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11 Back     alignment and structure
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11 Back     alignment and structure
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11 Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11 Back     alignment and structure
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Back     alignment and structure
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A Back     alignment and structure
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Back     alignment and structure
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Back     alignment and structure
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Back     alignment and structure
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei} Back     alignment and structure
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Back     alignment and structure
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Back     alignment and structure
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Back     alignment and structure
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Back     alignment and structure
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Back     alignment and structure
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Back     alignment and structure
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp} Back     alignment and structure
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Back     alignment and structure
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Back     alignment and structure
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Back     alignment and structure
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Back     alignment and structure
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3} Back     alignment and structure
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Back     alignment and structure
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Back     alignment and structure
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Back     alignment and structure
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11 Back     alignment and structure
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris} Back     alignment and structure
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} Back     alignment and structure
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18 Back     alignment and structure
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Back     alignment and structure
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Back     alignment and structure
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Back     alignment and structure
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Back     alignment and structure
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} Back     alignment and structure
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Back     alignment and structure
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Back     alignment and structure
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Back     alignment and structure
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11 Back     alignment and structure
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A Back     alignment and structure
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans} Back     alignment and structure
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Back     alignment and structure
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae} Back     alignment and structure
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Back     alignment and structure
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A Back     alignment and structure
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11 Back     alignment and structure
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Back     alignment and structure
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Back     alignment and structure
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Back     alignment and structure
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Back     alignment and structure
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Back     alignment and structure
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 Back     alignment and structure
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Back     alignment and structure
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11 Back     alignment and structure
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} Back     alignment and structure
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Back     alignment and structure
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Back     alignment and structure
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Back     alignment and structure
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Back     alignment and structure
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Back     alignment and structure
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Back     alignment and structure
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Back     alignment and structure
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21 Back     alignment and structure
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Back     alignment and structure
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Back     alignment and structure
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Back     alignment and structure
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3} Back     alignment and structure
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Back     alignment and structure
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Back     alignment and structure
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Back     alignment and structure
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Back     alignment and structure
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans} Back     alignment and structure
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Back     alignment and structure
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Back     alignment and structure
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A Back     alignment and structure
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 Back     alignment and structure
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A Back     alignment and structure
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV} Back     alignment and structure
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A Back     alignment and structure
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* Back     alignment and structure
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18 Back     alignment and structure
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Back     alignment and structure
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Back     alignment and structure
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans} Back     alignment and structure
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Back     alignment and structure
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Back     alignment and structure
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134} Back     alignment and structure
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24 Back     alignment and structure
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis} Back     alignment and structure
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Back     alignment and structure
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism} Back     alignment and structure
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Back     alignment and structure
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} Back     alignment and structure
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Back     alignment and structure
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Back     alignment and structure
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris} Back     alignment and structure
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Back     alignment and structure
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp} Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Back     alignment and structure
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} Back     alignment and structure
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Back     alignment and structure
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Back     alignment and structure
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} Back     alignment and structure
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21 Back     alignment and structure
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* Back     alignment and structure
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400} Back     alignment and structure
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile} Back     alignment and structure
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Back     alignment and structure
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha} Back     alignment and structure
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Back     alignment and structure
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Back     alignment and structure
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus} Back     alignment and structure
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134} Back     alignment and structure
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans} Back     alignment and structure
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Back     alignment and structure
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A Back     alignment and structure
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2} Back     alignment and structure
>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19 Back     alignment and structure
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae} Back     alignment and structure
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis} Back     alignment and structure
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50} Back     alignment and structure
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A Back     alignment and structure
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6 Back     alignment and structure
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Back     alignment and structure
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha} Back     alignment and structure
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile} Back     alignment and structure
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24 Back     alignment and structure
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A Back     alignment and structure
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A Back     alignment and structure
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha} Back     alignment and structure
>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A Back     alignment and structure
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400} Back     alignment and structure
>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii} Back     alignment and structure
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str} Back     alignment and structure
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Back     alignment and structure
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A Back     alignment and structure
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Back     alignment and structure
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis} Back     alignment and structure
>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19 Back     alignment and structure
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A Back     alignment and structure
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Back     alignment and structure
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus} Back     alignment and structure
>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme} Back     alignment and structure
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A Back     alignment and structure
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism} Back     alignment and structure
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50} Back     alignment and structure
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 302
d1j1la_288 b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 1e-93
d1tq5a1231 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Esc 9e-42
d1rc6a_253 b.82.1.11 (A:) Hypothetical protein YlbA {Escheric 1e-04
d2d40a1 308 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es 0.001
d1sq4a_273 b.82.1.11 (A:) Glyoxylate-induced protein PA1140 { 0.001
>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  277 bits (709), Expect = 1e-93
 Identities = 159/284 (55%), Positives = 201/284 (70%), Gaps = 2/284 (0%)

Query: 14  PRSVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFET 73
            + V    L+R Q EG+GA VRRSIGR EL+  DPFL+ DEF    P GFPDHPHRGFET
Sbjct: 2   SKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFET 61

Query: 74  VTYMLQ-GAVTHEDFEGHKGTIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSK 132
           V+Y+L+ G++ HEDF GH G + PGDLQWMTAGRGI+H+EMP ++    GLQLW+NL S 
Sbjct: 62  VSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSS 121

Query: 133 YKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGAHLR 192
            KM+EP+YQE+ S++I + +KDG+ V VI+GEALG+KS +YTRTPT+YLDF L PGA   
Sbjct: 122 EKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHS 181

Query: 193 QPILRSWNAFVYVLEGEGLFG-TVKSSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGG 251
           QPI + W +F+Y + G+   G       +  HH  +LG GD ++  NK  K   FVL+ G
Sbjct: 182 QPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAG 241

Query: 252 EPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWRSE 295
           EP+ EPV Q GPFVMNT EEI Q I DF N  NGFE+AK W+S+
Sbjct: 242 EPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSK 285
>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Length = 253 Back     information, alignment and structure
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308 Back     information, alignment and structure
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query302
d1j1la_288 Pirin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1tq5a1231 Hypothetical protein YhhW {Escherichia coli [TaxId 100.0
d1rc6a_253 Hypothetical protein YlbA {Escherichia coli [TaxId 98.96
d1sfna_245 Hypothetical protein DR1152 {Deinococcus radiodura 98.85
d1sefa_250 Hypothetical protein EF2996 {Enterococcus faecalis 98.64
d1sq4a_273 Glyoxylate-induced protein PA1140 {Pseudomonas aer 98.6
d1y3ta1330 Hypothetical protein YxaG {Bacillus subtilis [TaxI 98.34
d1j58a_372 Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil 98.07
d1o4ta_115 Hypothetical protein TM1287 {Thermotoga maritima [ 98.04
d1juha_348 Quercetin 2,3-dioxygenase {Aspergillus japonicus [ 97.82
d2d40a1308 Gentisate 1,2-dioxygenase {Escherichia coli [TaxId 97.74
d1y9qa299 Probable transcriptional regulator VC1968, C-termi 97.56
d1vj2a_114 Hypothetical protein TM1459 {Thermotoga maritima [ 97.49
d2b8ma1108 Hypothetical protein MJ0764 {Archaeon Methanococcu 97.33
d1vj2a_114 Hypothetical protein TM1459 {Thermotoga maritima [ 97.33
d1v70a_105 Hypothetical protein TTHA0104 {Thermus thermophilu 97.29
d2b8ma1108 Hypothetical protein MJ0764 {Archaeon Methanococcu 97.26
d1v70a_105 Hypothetical protein TTHA0104 {Thermus thermophilu 97.2
d3bu7a1355 Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ 97.05
d2phda1351 Gentisate 1,2-dioxygenase {Pseudaminobacter salicy 96.93
d1y9qa299 Probable transcriptional regulator VC1968, C-termi 96.92
d2f4pa1134 Hypothetical protein TM1010 {Thermotoga maritima [ 96.81
d1o4ta_115 Hypothetical protein TM1287 {Thermotoga maritima [ 96.7
d1sefa_250 Hypothetical protein EF2996 {Enterococcus faecalis 96.62
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 96.52
d1rc6a_253 Hypothetical protein YlbA {Escherichia coli [TaxId 96.51
d1uija1170 Seed storage 7S protein {Soybean (Glycine max), be 96.49
d2f4pa1134 Hypothetical protein TM1010 {Thermotoga maritima [ 96.48
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 96.3
d1fxza2174 Seed storage 7S protein {Soybean (Glycine max), pr 96.2
d1sq4a_273 Glyoxylate-induced protein PA1140 {Pseudomonas aer 96.02
d1uika1203 Seed storage 7S protein {Soybean (Glycine max), be 95.63
d1sfna_245 Hypothetical protein DR1152 {Deinococcus radiodura 95.61
d1dgwa_178 Seed storage 7S protein {Jack bean (Canavalia ensi 95.48
d1j58a_ 372 Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil 95.42
g1dgw.1168 Seed storage 7S protein {Jack bean (Canavalia ensi 95.29
d1lr5a_160 Auxin binding protein {Maize (Zea mays) [TaxId: 45 95.07
d1lr5a_160 Auxin binding protein {Maize (Zea mays) [TaxId: 45 94.85
d1od5a2173 Seed storage 7S protein {Soybean (Glycine max), gl 94.72
d1y3ta1 330 Hypothetical protein YxaG {Bacillus subtilis [TaxI 94.49
d2bnma2122 Hydroxypropylphosphonic acid epoxidase Fom4, C-ter 94.34
d2et1a1201 Germin {Barley (Hordeum vulgare) [TaxId: 4513]} 94.02
d2bnma2122 Hydroxypropylphosphonic acid epoxidase Fom4, C-ter 93.96
d1uika2185 Seed storage 7S protein {Soybean (Glycine max), be 93.68
d2pyta1128 Ethanolamine utilization protein EutQ {Salmonella 93.07
d2et1a1201 Germin {Barley (Hordeum vulgare) [TaxId: 4513]} 92.1
d2phla2162 Seed storage 7S protein {French bean (Phaseolus vu 91.93
d2o1qa1144 Putative acetyl/propionyl-CoA carboxylase subunit 91.48
d2d40a1 308 Gentisate 1,2-dioxygenase {Escherichia coli [TaxId 91.25
d1juha_348 Quercetin 2,3-dioxygenase {Aspergillus japonicus [ 90.26
d1pmia_440 Phosphomannose isomerase {Yeast (Candida albicans) 89.09
d2phla1200 Seed storage 7S protein {French bean (Phaseolus vu 88.06
d1x82a_190 Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc 88.04
d1fxza2174 Seed storage 7S protein {Soybean (Glycine max), pr 87.72
d1o5ua_88 Hypothetical protein TM1112 {Thermotoga maritima [ 87.66
d2phda1 351 Gentisate 1,2-dioxygenase {Pseudaminobacter salicy 84.88
d1dgwa_178 Seed storage 7S protein {Jack bean (Canavalia ensi 84.25
g1dgw.1168 Seed storage 7S protein {Jack bean (Canavalia ensi 83.34
d3elna1186 Cysteine dioxygenase type I {Rattus norvegicus [Ta 82.63
d1uika1203 Seed storage 7S protein {Soybean (Glycine max), be 81.25
d1uija1170 Seed storage 7S protein {Soybean (Glycine max), be 80.14
>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-88  Score=629.25  Aligned_cols=285  Identities=56%  Similarity=0.998  Sum_probs=273.0

Q ss_pred             cceeeEEeeCCCcCCCCceEEEeecCCCcccCCCCeEEeeccccCCCCCCCCCCCCCceEEEEEcee-eEEeecCCCCee
Q 039926           14 PRSVVRKFLARPQGEGMGAIVRRSIGRFELRYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQG-AVTHEDFEGHKG   92 (302)
Q Consensus        14 ~r~i~~~~~~~~~~~G~g~~v~r~~~~~~~~~~~Pf~~ld~~~~~~~~gf~~HPHrg~EivTyvl~G-~l~H~DS~Gn~~   92 (302)
                      .|+|.+.+.++++.+|.|++|+|+||.+.++.+|||++|||+.+.++.||++||||||||||||++| .++|+||+||.+
T Consensus         2 ~~~~~~~~~~~~~~~g~G~~v~R~~~~~~~~~~~Pf~~~d~~~~~~~~gf~~HPH~g~e~vTy~~~G~~~~H~Ds~G~~~   81 (288)
T d1j1la_           2 SKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTG   81 (288)
T ss_dssp             CCCEEEEEECCEEEETBTEEEEECTTSTTCCCCTTEEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEEETTSCEE
T ss_pred             CceEEEEEcCccccccCCEEEEEeCCCCCccccCceEEeEcCcCCCCCCCCCCCcCCeEEEEEEEeCCeEEEecCCCCee
Confidence            5899999999999999999999999999999999999999999999999999999999999999998 599999999999


Q ss_pred             eeCCCceEEEeCCCCeEEEeeeCCCCceeEEEEEeecccccCCCCCceeeecCcccceeecCCeEEEEEecCCCCCcCCc
Q 039926           93 TIGPGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKYKMIEPRYQEVSSKDIAEAAKDGIKVRVIAGEALGVKSPI  172 (302)
Q Consensus        93 ~i~~G~vQwmtAGsGI~HsE~~~~~~~~~~lQiWinlP~~~k~~~P~y~~~~~~~ip~~~~~g~~~rviaG~~~g~~sp~  172 (302)
                      +|++|||||||||+||+|||+|..++++|+||||||||++.|+.+|+|+++.++++|..+.++..+||++|++.+.++|+
T Consensus        82 ~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~lQiWinlp~~~k~~~P~y~~~~~~diP~~~~~~~~~~vi~G~~~g~~~pi  161 (288)
T d1j1la_          82 KMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKV  161 (288)
T ss_dssp             EECTTCEEEEECTTCEEEEEEECSSSCEEEEEEEEECCGGGTTSCCEEEEECGGGSCCCEETTEEEEEEESEETTEECCC
T ss_pred             EecCCCEEEEecccceEecccccccccceeeEEEecCChhhccccccccccccccCcccccccceEEEEecccccccccc
Confidence            99999999999999999999998888999999999999999999999999999999999888899999999999999999


Q ss_pred             cccCCcEEEEEEECCCCEEEeecCCCCeEEEEEEecceEEcCCC-CceecCCceEEEcCCCeEEEEecCCCCeEEEEecc
Q 039926          173 YTRTPTMYLDFTLKPGAHLRQPILRSWNAFVYVLEGEGLFGTVK-SSPVSAHHLLLLGSGDGLEAWNKFSKPLRFVLVGG  251 (302)
Q Consensus       173 ~~~~~~~~~di~l~~g~~~~~~~~~~~~~~lyV~~G~v~i~~~~-~~~l~~~d~~~l~~~~~l~l~a~~~~~a~~ll~~g  251 (302)
                      .+++++.+++++|++|+.+++++|+++++|+||++|++.+++.. ...+..++++.+.+++.+++++.+.++|+||||+|
T Consensus       162 ~~~s~~~~~~i~l~~g~~~~~~l~~~~~~~lyvi~G~~~v~g~~~~~~l~~~~~~~l~~gd~~~i~~~~~~~a~~LLl~G  241 (288)
T d1j1la_         162 YTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAG  241 (288)
T ss_dssp             CCSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEESCTTSCEEECTTEEEEECSCSEEEEECCSSSCEEEEEEEE
T ss_pred             ccCCchhhhhhhcccCceEEEecCCCCeEEEEEEEeeEEecCcccceeecCceEEEEcCCCeEEEEeCCCCCCEEEEEEC
Confidence            99999999999999999999999999999999999999998632 25789999999999999999886667899999999


Q ss_pred             cccCCceeecCCCccCCHHHHHHHHHHHhcccCCCCCCCcchhhhcc
Q 039926          252 EPIGEPVAQLGPFVMNTQEEIDQTIDDFENYVNGFEKAKHWRSEAAL  298 (302)
Q Consensus       252 ~P~~epi~~~GpfVm~t~~ei~~A~~dy~~g~~g~~~~~~~~~~~~~  298 (302)
                      +||+|||++||||||||++||+||++|||+|+|||+++++|+|+|++
T Consensus       242 ~Pi~EPv~~~GPFVmnt~eeI~qA~~dy~~g~fGf~~~~~w~~~~~~  288 (288)
T d1j1la_         242 EPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN  288 (288)
T ss_dssp             CCCCSCCEEETTEEESSHHHHHHHHHHHHTTCTTCGGGSSCCCSTTC
T ss_pred             CcCCCCEEeeCCcccCCHHHHHHHHHHHHcCCCCCCcCCCCccccCC
Confidence            99999999999999999999999999999999999999999999985
>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Back     information, alignment and structure
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Back     information, alignment and structure
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Back     information, alignment and structure
>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Back     information, alignment and structure
>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Back     information, alignment and structure
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Back     information, alignment and structure
>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Back     information, alignment and structure
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Back     information, alignment and structure
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} Back     information, alignment and structure
>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} Back     information, alignment and structure
>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Back     information, alignment and structure
>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Back     information, alignment and structure
>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]} Back     information, alignment and structure
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Back     information, alignment and structure
>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Back     information, alignment and structure
>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Back     information, alignment and structure
>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Back     information, alignment and structure
>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Back     information, alignment and structure
>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]} Back     information, alignment and structure
>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Back     information, alignment and structure
>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Back     information, alignment and structure