Citrus Sinensis ID: 039928


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-----
MKGEGKMMFKSKMKWVGLIGLILSTFSLLVHIFLARFTEDGVSEYQSSVTIFSWRPIFENAEFSKTSPLYRRLWGPVRRLESLHPDASPRGYYADPSYRANGFIFVRIQGGFHEIRNSISDVVVVARLLNATLVIPEIQSTTSSKGISSQFKSFAYLYNEEQFMAALAKDINIVKTLPKNLKGARRKKKIPSFRVSYSASPYFYLHHVLPVLIKHSVVELVVSDGGCLQASLPPHLEEYQRLRCRVAFHALRFRQEVQELATRILRRLRAPGRPFIAFDPGMIRDALAYHGCAELFQDVHTELIQHKRAWMIKRRIVRGKLSVNSMELRLNGTCPLMPEEVGILLRAYGYSWDTIIYVSGGEVFGGQRTLIPLHAMFANVVDRTSLSTAWELTRIYGREANLIDPKTPLSVEEEEKHESWKNVGPRPRPLPPPPARPKSYNIEGWWGWVAESDNEPESTVMELRTNAHKLLWEAIDYMVCVEADVFIPGFDRDGKGHPNFASLVMGHRLYQSASSKTYRPDRRKVVKLLEETRDHLYQANHTWVTSIRKHLRRSLLDGLTEASTKSKSLSVLSHPVPECSCLKYDPTESYVNASSPSHSQLQATLGAVHHCPAWMDSQIISRSKDKESEEDLDEDDSSSSGLFFRHNGSNHESGGGEINKEEAQLEDQEEESGEK
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHcEEEcccccccccccccccccccccccccHHHHHHHcccccEEEccccHHHHccccccccccccccccccHHHHHHHHHHHHHHccEEEEEEcccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccccccHHHHHHHHHHcccccccEEEEEccEEEccccccHHHHHHccccccccccccHHHHHHHccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccEEccccccccccccccccccccccccccccccc
ccccccEEEEEcEEEEEcccHHEcHHHHHHHHHHHHcccccccccccHHHHHcccccccccccccccccHHHccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccHHccHHHHccHHHHHHHHHHHcEEHHcccHHHHHcccccccccccccccccHHHHHHHHHHHHHHccEEEEEcccHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccEEEEEEcccccEEEEccccccccHHHHHHHHHHHHHcccccEcccccEEcHHHHHHcccccccHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHccccccccccccHHHHHHccccccHHHHcccccccccHHHHHHHHHccccccccccccccccccccccEEEEEEEccccccccHHHHcccccHHHHHHHHHHEEccccEEEEcccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccHHHHcccccccc
mkgegkmmFKSKMKWVGLIGLILSTFSLLVHIFLARFTEDGVSEYQSSVTIfswrpifenaefsktsplyrrlwgpvrrleslhpdasprgyyadpsyranGFIFVRIQGGFHEIRNSISDVVVVARLLNATLvipeiqsttsskgissQFKSFAYLYNEEQFMAALAKDINIVKTlpknlkgarrkkkipsfrvsysaspyfylHHVLPVLIKHSVVELVVsdggclqaslpphleEYQRLRCRVAFHALRFRQEVQELATRILRRLrapgrpfiafdpgMIRDALAYHGCAELFQDVHTELIQHKRAWMIKRRIVRGKLSVNSMELrlngtcplmpEEVGILLRAYGYSWDTIIYVsggevfggqrtlipLHAMFANVVDRTSLSTAWELTRIYgreanlidpktplsveeeekheswknvgprprplpppparpksyniegwwgwvaesdnepesTVMELRTNAHKLLWEAIDYMVCVEadvfipgfdrdgkghpnfASLVMGhrlyqsassktyrpdRRKVVKLLEETRDHLYQANHTWVTSIRKHLRRSLLDGLteastkskslsvlshpvpecsclkydptesyvnasspshsQLQATLGavhhcpawmdsqiisrskdkeseedldeddssssglffrhngsnhesgggeinkeeaqledqeeesgek
MKGEGKMMFKSKMKWVGLIGLILSTFSLLVHIFLARFTEDGVSEYQSSVTIfswrpifenaefsktsplyrrlWGPVRRLESLHPDASPRGYYADPSYRANGFIFVRIQGGFHEIRNSISDVVVVARLLNATLVipeiqsttsskgissQFKSFAYLYNEEQFMAALAKDINIVKtlpknlkgarrkkkipsfrvSYSASPYFYLHHVLPVLIKHSVVELVVSDGGCLQASLPPHLEEYQRLRCRVAFHALRFRQEVQELATRILRRLRAPGRPFIAFDPGMIRDALAYHGCAELFQDVHTELIQHKRAWMIKRRIVRGKLSVNSMELRLNGTCPLMPEEVGILLRAYGYSWDTIIYVSGGEVFGGQRTLIPLHAMFANVVDRTSLSTAWELTRiygreanlidpktplsveeeekheswknvgprprplpppparPKSYNIEGWWGWVAESDNEPESTVMELRTNAHKLLWEAIDYMVCVEADVFIPGFDRDGKGHPNFASLVMGHRLyqsassktyrpdrrKVVKLLEETRDHLYQANHTWVTSIRKHLRRSLLDGLTEASTkskslsvlshpvpECSCLKYDPTESYVNASSPSHSQLQATLGAVHHCPAWMDSQIISRSKDKESEEDLDeddssssglffrhngsnhesgggeinkeeaqledqeeesgek
MKGEGKMMFKSKMKWVGLIGLILSTFSLLVHIFLARFTEDGVSEYQSSVTIFSWRPIFENAEFSKTSPLYRRLWGPVRRLESLHPDASPRGYYADPSYRANGFIFVRIQGGFHEIRNSISDVVVVARLLNATLVIPEIQSTTSSKGISSQFKSFAYLYNEEQFMAALAKDINIVKTLPKNLKGARRKKKIPSFRVSYSASPYFYLHHVLPVLIKHSVVELVVSDGGCLQASLPPHLEEYQRLRCRVAFHALRFRQEVQELATRILRRLRAPGRPFIAFDPGMIRDALAYHGCAELFQDVHTELIQHKRAWMIKRRIVRGKLSVNSMELRLNGTCPLMPEEVGILLRAYGYSWDTIIYVSGGEVFGGQRTLIPLHAMFANVVDRTSLSTAWELTRIYGREANLIDPKTPLSVEEEEKHESWKNVGprprplpppparpKSYNIEGWWGWVAESDNEPESTVMELRTNAHKLLWEAIDYMVCVEADVFIPGFDRDGKGHPNFASLVMGHRLYQSASSKTYRPDRRKVVKLLEETRDHLYQANHTWVTSIRKHLRRSLLDGLTEASTKSKSLSVLSHPVPECSCLKYDPTESYVNASSPSHSQLQATLGAVHHCPAWMDSQIISRskdkeseedldeddssssGLFFRHNGSNHESGGGEINKeeaqledqeeesgeK
**********SKMKWVGLIGLILSTFSLLVHIFLARFTEDGVSEYQSSVTIFSWRPIFENAEFSKTSPLYRRLWGPVRRLESLHPDASPRGYYADPSYRANGFIFVRIQGGFHEIRNSISDVVVVARLLNATLVIPEIQSTTSSKGISSQFKSFAYLYNEEQFMAALAKDINIVKTLPKNLKGARRKKKIPSFRVSYSASPYFYLHHVLPVLIKHSVVELVVSDGGCLQASLPPHLEEYQRLRCRVAFHALRFRQEVQELATRILRRLRAPGRPFIAFDPGMIRDALAYHGCAELFQDVHTELIQHKRAWMIKRRIVRGKLSVNSMELRLNGTCPLMPEEVGILLRAYGYSWDTIIYVSGGEVFGGQRTLIPLHAMFANVVDRTSLSTAWELTRIYGREANLI*************************************NIEGWWGWVAE********VMELRTNAHKLLWEAIDYMVCVEADVFIPGFDRDGKGHPNFASLVMGHRLYQ***********RKVVKLLEETRDHLYQANHTWVTSIRKHLRRSLLDGL*****************PECSCLKY******************ATLGAVHHCPAWMD***********************************************************
*********KSKMKWVGLIGLILSTFSLLVHIFLARFTEDGVSEYQSSV***************************VRRLESLHPDAS**********RANGFIFVRIQGGFHEIRNSISDVVVVARLLNATLVIPEIQSTTSSKG*SSQFKSFAYLYNEEQFMAALAKDINIVKTLPKNLK**RR***IPSFRVSYSASPYFYLHHVLPVLIKHSVVELVVSDGGCL**SL*PHLEEYQRLRCRVAFHALRFRQEVQELATRILRRLRAPGRPFIAFDPGMIRDALAYHGCAELFQDVHTELIQHKRAWMIKRRIVRGKLSVNSMELRLNGTCPLMPEEVGILLRAYGYSWDTIIYVSGGEVFGGQRTLIPLHAMFANVVDRTSLSTAWELTRIYGREANLIDPKTPLSVEEEEKHESWKNVGPRPRPL********SYNIEGWWGWVAES**************AHKLLWEAIDYMVCVEADVFIPGFDRD****PNFASLVMGHRLYQSASSKTYRPDRRKVVKLLEETRDHLYQAN*******************************LSHPVPEC****************************VHH*****************************************************************
********FKSKMKWVGLIGLILSTFSLLVHIFLARFTEDGVSEYQSSVTIFSWRPIFENAEFSKTSPLYRRLWGPVRRLESLHPDASPRGYYADPSYRANGFIFVRIQGGFHEIRNSISDVVVVARLLNATLVIPEIQSTTSSKGISSQFKSFAYLYNEEQFMAALAKDINIVKTLPKN*********IPSFRVSYSASPYFYLHHVLPVLIKHSVVELVVSDGGCLQASLPPHLEEYQRLRCRVAFHALRFRQEVQELATRILRRLRAPGRPFIAFDPGMIRDALAYHGCAELFQDVHTELIQHKRAWMIKRRIVRGKLSVNSMELRLNGTCPLMPEEVGILLRAYGYSWDTIIYVSGGEVFGGQRTLIPLHAMFANVVDRTSLSTAWELTRIYGREANLIDPKTP*******************RPLPPPPARPKSYNIEGWWGWVAESDNEPESTVMELRTNAHKLLWEAIDYMVCVEADVFIPGFDRDGKGHPNFASLVMGHRLYQSASSKTYRPDRRKVVKLLEETRDHLYQANHTWVTSIRKHLRRSLLDGLTEASTKSKSLSVLSHPVPECSCLKYDPTE***********QLQATLGAVHHCPAWMDSQIIS******************SGLFFRHNGSNHESGGGEINK***************
****GKMMFKSKMKWVGLIGLILSTFSLLVHIFLARFTEDGVSEYQSSVTIFSWRPI**********PLYRRLWGPVRRLESLHPDASPRGYYADPSYRANGFIFVRIQGGFHEIRNSISDVVVVARLLNATLVIPEIQSTTSSKGISSQFKSFAYLYNEEQFMAALAKDINIVKTLPKNLKGARRKKKIPSFRVSYSASPYFYLHHVLPVLIKHSVVELVVSDGGCLQASLPPHLEEYQRLRCRVAFHALRFRQEVQELATRILRRLRAPGRPFIAFDPGMIRDALAYHGCAELFQDVHTELIQHKRAWMIKRRIVRGKLSVNSMELRLNGTCPLMPEEVGILLRAYGYSWDTIIYVSGGEVFGGQRTLIPLHAMFANVVDRTSLSTAWELTRIYGREANLIDPKTPLSVEEEEKHESWKNVGPRPRPLPPPPARPKSYNIEGWWGWVAESDNEPESTVMELRTNAHKLLWEAIDYMVCVEADVFIPGFDRDGKGHPNFASLVMGHRLYQSASSKTYRPDRRKVVKLLEETRDHLYQANHTWVTSIRKHLRR**************SLSVLSHPVPECSCLK******************************************************SSSGLFFRHNG***************************
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKGEGKMMFKSKMKWVGLIGLILSTFSLLVHIFLARFTEDGVSEYQSSVTIFSWRPIFENAEFSKTSPLYRRLWGPVRRLESLHPDASPRGYYADPSYRANGFIFVRIQGGFHEIRNSISDVVVVARLLNATLVIPEIQSTTSSKGISSQFKSFAYLYNEEQFMAALAKDINIVKTLPKNLKGARRKKKIPSFRVSYSASPYFYLHHVLPVLIKHSVVELVVSDGGCLQASLPPHLEEYQRLRCRVAFHALRFRQEVQELATRILRRLRAPGRPFIAFDPGMIRDALAYHGCAELFQDVHTELIQHKRAWMIKRRIVRGKLSVNSMELRLNGTCPLMPEEVGILLRAYGYSWDTIIYVSGGEVFGGQRTLIPLHAMFANVVDRTSLSTAWELTRIYGREANLIDPKTPLSVEEEEKHESWKNVGPRPRPLPPPPARPKSYNIEGWWGWVAESDNEPESTVMELRTNAHKLLWEAIDYMVCVEADVFIPGFDRDGKGHPNFASLVMGHRLYQSASSKTYRPDRRKVVKLLEETRDHLYQANHTWVTSIRKHLRRSLLDGLTEASTKSKSLSVLSHPVPECSCLKYDPTESYVNASSPSHSQLQATLGAVHHCPAWMDSQIISRSKDKESEEDLDEDDSSSSGLFFRHNGSNHESGGGEINKEEAQLEDQEEESGEK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query675 2.2.26 [Sep-21-2011]
Q8W486519 Uncharacterized protein A no no 0.435 0.566 0.327 2e-39
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1 Back     alignment and function desciption
 Score =  164 bits (416), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/311 (32%), Positives = 168/311 (54%), Gaps = 17/311 (5%)

Query: 85  PDASPRGYYADPSYRANGFIFVRIQGGFHEIRNSISDVVVVARLLNATLVIPEIQSTTSS 144
           P ++PR  +  P+   NG++ VR  GG ++ R++I + V+ AR++NATLV+PE+ + +  
Sbjct: 73  PSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFW 132

Query: 145 KGISSQFKSFAYLYNEEQFMAALAKDINIVKTLPKNLKGARRKKKIPSFRVS--YSASPY 202
              S     F  +Y+ E F+  L  D+ IV  +P   K  +  KKI +F++     A   
Sbjct: 133 HDDSG----FQGIYDVEHFIETLKYDVKIVGKIPDVHKNGK-TKKIKAFQIRPPRDAPIE 187

Query: 203 FYLHHVLPVLIKHSVVELVVSDGGCLQASLPPHLEEYQRLRCRVAFHALRFRQEVQELAT 262
           +YL   L  + +HS + L        +    P   EYQRLRCRV +HALRF+  + +L+ 
Sbjct: 188 WYLTTALKAMREHSAIYLTPFSHRLAEEIDNP---EYQRLRCRVNYHALRFKPHIMKLSE 244

Query: 263 RILRRLRAPGRPFIAFDPGMIRDALAYHGCAELFQDVHTELIQHKRAWMIKRRIVRGKLS 322
            I+ +LR+ G  F++       D LA+ GC ++F     ++++  R    K      +L 
Sbjct: 245 SIVDKLRSQGH-FMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYR----KENFADKRLI 299

Query: 323 VNSMELRLNGTCPLMPEEVGILLRAYGYSWDTIIYVSGGEVFGGQRTLIPLHAMFANVVD 382
            N  E R  G CPL PEEVG++LRA  +   T IY++ GE+FGG++ + P   +F  + +
Sbjct: 300 YN--ERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRLDN 357

Query: 383 RTSLSTAWELT 393
            +S+  + EL+
Sbjct: 358 HSSVDPSEELS 368





Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query675
224119240679 predicted protein [Populus trichocarpa] 0.997 0.991 0.778 0.0
255569968671 conserved hypothetical protein [Ricinus 0.985 0.991 0.809 0.0
224120716667 predicted protein [Populus trichocarpa] 0.980 0.992 0.776 0.0
225451842681 PREDICTED: DUF246 domain-containing prot 0.997 0.988 0.783 0.0
298204442669 unnamed protein product [Vitis vinifera] 0.980 0.989 0.782 0.0
356523666672 PREDICTED: DUF246 domain-containing prot 0.992 0.997 0.751 0.0
356568845673 PREDICTED: DUF246 domain-containing prot 0.994 0.997 0.751 0.0
357502579668 DUF246 domain-containing protein [Medica 0.982 0.992 0.737 0.0
124361075671 Hypothetical plant protein [Medicago tru 0.982 0.988 0.731 0.0
297818652677 hypothetical protein ARALYDRAFT_484728 [ 0.983 0.980 0.715 0.0
>gi|224119240|ref|XP_002331262.1| predicted protein [Populus trichocarpa] gi|222873687|gb|EEF10818.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1092 bits (2825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/677 (77%), Positives = 589/677 (87%), Gaps = 4/677 (0%)

Query: 1   MKGEGKMMFKSKMKWVGLIGLILSTFSLLVHIFLARFTEDGVSEYQSSVTIFSWRPIFEN 60
           MKGE KMM KSKMKWVGL+GL+LS FSL VH  LARFTE+G+++YQSSVTIFSWRP+FEN
Sbjct: 1   MKGERKMMIKSKMKWVGLVGLVLSAFSLFVHFLLARFTEEGITDYQSSVTIFSWRPVFEN 60

Query: 61  AEFSKTSPLYRRLWGPVRRLESLHPDASPRGYYADPSYRANGFIFVRIQGGFHEIRNSIS 120
            +F+K SP YRRLWGPVRRLESLHPDA+PRGYY DP   ++G++FVRIQGGFHEIRNSI 
Sbjct: 61  PDFAKNSPSYRRLWGPVRRLESLHPDANPRGYYTDPRSESSGYVFVRIQGGFHEIRNSIC 120

Query: 121 DVVVVARLLNATLVIPEIQSTTSSKGISSQFKSFAYLYNEEQFMAALAKDINIVKTLPKN 180
           DVVV++RLLNATLVIPEIQSTT SKGISSQFKSFAYLYNE+ FMAAL KD+ +VKTLP+N
Sbjct: 121 DVVVISRLLNATLVIPEIQSTTRSKGISSQFKSFAYLYNEDNFMAALVKDVKVVKTLPQN 180

Query: 181 LKGARRKKKIPSFRVSYSASPYFYLHHVLPVLIKHSVVELVVSDGGCLQASLPPHLEEYQ 240
           LK ARR KKIPSFRV  SASPYFYLHHVLPVL KH VVELVVSDGGCLQA LPP LEEYQ
Sbjct: 181 LKDARRLKKIPSFRVPNSASPYFYLHHVLPVLNKHVVVELVVSDGGCLQAILPPQLEEYQ 240

Query: 241 RLRCRVAFHALRFRQEVQELATRILRRLRAPGRPFIAFDPGMIRDALAYHGCAELFQDVH 300
           RLRCRVAFHALRFRQEVQELAT++L+RLRAPG+PFIAFDPG+ RDALAY+GCAELFQDVH
Sbjct: 241 RLRCRVAFHALRFRQEVQELATKMLQRLRAPGQPFIAFDPGLTRDALAYYGCAELFQDVH 300

Query: 301 TELIQHKRAWMIKRRIVRGKLSVNSMELRLNGTCPLMPEEVGILLRAYGYSWDTIIYVSG 360
            ELIQHKRAWM KR IV+GKLSVNS E RLNG+CPLMPEEVGILLRAYGY WDTI+YVSG
Sbjct: 301 NELIQHKRAWMKKRGIVKGKLSVNSAEQRLNGSCPLMPEEVGILLRAYGYPWDTILYVSG 360

Query: 361 GEVFGGQRTLIPLHAMFANVVDRTSLSTAWELTRIYGREANLIDPK--TPLSVEEEEKHE 418
           GEVFGGQRTL PLHAMF N+VDRTSLS AWEL RIYGRE NL+D K   P SV +E+KHE
Sbjct: 361 GEVFGGQRTLTPLHAMFENIVDRTSLSAAWELNRIYGREVNLVDTKLRAPPSVVQEKKHE 420

Query: 419 SWKNVG-PRPRPLPPPPARPKSYNIEGWWGWVAESDNEPESTVMELRTNAHKLLWEAIDY 477
            WKN G       PPP      YNIEGWWGWVAESDNEPESTVMELRTNAHKLLWEAIDY
Sbjct: 421 VWKNEGPRPRPLPPPPARPKYPYNIEGWWGWVAESDNEPESTVMELRTNAHKLLWEAIDY 480

Query: 478 MVCVEADVFIPGFDRDGKGHPNFASLVMGHRLYQSASSKTYRPDRRKVVKLLEETRDHLY 537
           ++CVEADVFIPGFDRDGKG PNFASLVMGHRLYQSA+SKT++P+R++VVKLLEE R+HLY
Sbjct: 481 LICVEADVFIPGFDRDGKGRPNFASLVMGHRLYQSAASKTFQPNRKEVVKLLEENREHLY 540

Query: 538 QANHTWVTSIRKHLRRSLLDGLTEASTKSKSLSVLSHPVPECSCLKYDPTESYVNASSPS 597
           QANHTW+TS R HLRRSL+DG+  AST+SK LS LSHPVPECSCL+ D T+  ++ SSPS
Sbjct: 541 QANHTWLTSTRSHLRRSLIDGVMRASTESKPLSFLSHPVPECSCLRSDLTKRSLHTSSPS 600

Query: 598 H-SQLQATLGAVHHCPAWMDSQIISRSKDKESEEDLDEDDSSSSGLFFRHNGSNHESGGG 656
             + ++A LG +HHCP WMDS I ++ K+KE EED DED SSSSGLFFR++G NHESGGG
Sbjct: 601 TWAPVEAALGVMHHCPMWMDSGIKTKLKEKEIEEDPDEDISSSSGLFFRNSGGNHESGGG 660

Query: 657 EINKEEAQLEDQEEESG 673
           E+ KEE+QL+DQEE  G
Sbjct: 661 ELIKEESQLDDQEELEG 677




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569968|ref|XP_002525947.1| conserved hypothetical protein [Ricinus communis] gi|223534776|gb|EEF36467.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224120716|ref|XP_002330934.1| predicted protein [Populus trichocarpa] gi|222873128|gb|EEF10259.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225451842|ref|XP_002281879.1| PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera] Back     alignment and taxonomy information
>gi|298204442|emb|CBI16922.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356523666|ref|XP_003530457.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
>gi|356568845|ref|XP_003552618.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
>gi|357502579|ref|XP_003621578.1| DUF246 domain-containing protein [Medicago truncatula] gi|355496593|gb|AES77796.1| DUF246 domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|124361075|gb|ABN09047.1| Hypothetical plant protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297818652|ref|XP_002877209.1| hypothetical protein ARALYDRAFT_484728 [Arabidopsis lyrata subsp. lyrata] gi|297323047|gb|EFH53468.1| hypothetical protein ARALYDRAFT_484728 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query675
TAIR|locus:2102886677 AT3G30300 [Arabidopsis thalian 0.96 0.957 0.690 1.7e-249
TAIR|locus:2079404656 EDA30 "embryo sac development 0.890 0.916 0.490 5.2e-152
TAIR|locus:2010657519 AT1G04910 [Arabidopsis thalian 0.475 0.618 0.317 8.8e-54
TAIR|locus:2009467565 AT1G22460 [Arabidopsis thalian 0.444 0.530 0.323 1.5e-50
TAIR|locus:2008935590 AT1G11990 [Arabidopsis thalian 0.472 0.540 0.335 8e-48
TAIR|locus:2130938549 AT4G16650 [Arabidopsis thalian 0.4 0.491 0.357 1.2e-47
TAIR|locus:2174754522 AT5G64600 [Arabidopsis thalian 0.557 0.720 0.295 8.8e-47
TAIR|locus:2121793551 RHS17 "root hair specific 17" 0.450 0.551 0.331 5.5e-45
TAIR|locus:2143181508 AT5G15740 [Arabidopsis thalian 0.408 0.543 0.327 1.9e-44
TAIR|locus:2014869499 AT1G14020 [Arabidopsis thalian 0.474 0.641 0.308 1.6e-43
TAIR|locus:2102886 AT3G30300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2403 (851.0 bits), Expect = 1.7e-249, P = 1.7e-249
 Identities = 460/666 (69%), Positives = 530/666 (79%)

Query:     1 MKGEGKMMFKSKMKWVGLIGLILSTFSLLVHIFLARFTEDGVSEYQSSVTIFSWRPIFEN 60
             MKGEGK+  KS+MKW+GL+GL+LS FSLLVH  LA FT+D +S+Y   VTIFSWRPIF+N
Sbjct:     1 MKGEGKVFLKSRMKWIGLLGLVLSAFSLLVHFLLAGFTDDSISDYSIPVTIFSWRPIFDN 60

Query:    61 AEFSKTSPLYRRLWGPVRRLESLHPDASPRGYYADPSYRANGFIFVRIQGGFHEIRNSIS 120
               F++ +PLYRRLWGP R +E+L PDA+PRG+++DP  R NGF+FVRIQGGFHEIRNSI 
Sbjct:    61 PRFARHTPLYRRLWGPTRHVETLLPDANPRGFHSDPPARTNGFVFVRIQGGFHEIRNSIP 120

Query:   121 DVVVVARLLNATLVIPEIQSTTSSKGISSQFKSFAYLYNEEQFMAALAKDINIVKTLPKN 180
             DVV V+RLLNATLVIPEIQSTTSSKGISSQFKSFAYLYNEE FMA +A D+ +VKTLPKN
Sbjct:   121 DVVAVSRLLNATLVIPEIQSTTSSKGISSQFKSFAYLYNEEHFMATIANDVRVVKTLPKN 180

Query:   181 LKGARRKKKIPSFRVSYSASPYFYLHHVLPVLIKHSVVELVVSDGGCLQASLPPHLEEYQ 240
             LK ARRKK+IPSF+VSY +SPY+YLHHVLPVLIKHSVVELVV  GGCLQA LP  LEEYQ
Sbjct:   181 LKWARRKKQIPSFKVSYGSSPYYYLHHVLPVLIKHSVVELVVPHGGCLQAILPSDLEEYQ 240

Query:   241 RLRCRVAFHALRFRQEVQELATRILRRLRAPGRPFIAFDPGMIRDALAYHGCAELFQDVH 300
             RLRCRVAFH L+FR+EVQEL+T++L+RLR  GRPFIA+DPGM R+ALAYHGCAELFQDVH
Sbjct:   241 RLRCRVAFHGLQFRKEVQELSTKVLQRLRPLGRPFIAYDPGMTREALAYHGCAELFQDVH 300

Query:   301 TELIQHKRAWMIKRRIVRGKLSVNSMELRLNGTCPLMPEEVGILLRAYGYSWDTIIYVSG 360
             TELIQHKRAWMIKR IV+GKLSV+S E RL G CPLMPEEVGILLRAYGYSWDTIIYV+G
Sbjct:   301 TELIQHKRAWMIKRGIVKGKLSVDSAEQRLAGLCPLMPEEVGILLRAYGYSWDTIIYVAG 360

Query:   361 GEVFGGQRTLIPLHAMFANVVDRTSLSTAWELTRIYGREA--NLIDPKTPLSVEEEEKHE 418
             GEVFGGQRTLIPLH MF NVVDRTSLST+WEL ++YGREA  N I   TP S+E E KH+
Sbjct:   361 GEVFGGQRTLIPLHGMFENVVDRTSLSTSWELAKMYGREAKHNDIKKMTPPSIEVETKHD 420

Query:   419 SWKNVGXXXXXXXXXXXXXKSYNIEGWWGWVAESDNEPESTVMELRTNAHKLLWEAIDYM 478
             S K+               K YNIEGWWGWVAESDNEPESTV+ELRTNAHKLLWEAIDY+
Sbjct:   421 SLKSTRQRPQPLPPPPARPKYYNIEGWWGWVAESDNEPESTVIELRTNAHKLLWEAIDYV 480

Query:   479 VCVEADVFIPGFDRDGKGHPNFASLVMGHRLYQSASSKTYRPDRRKVVKLLEETRDHLYQ 538
             V VEADVFI GFDRDGKGHP+FASLVMGHRLYQSAS+KT+RPDR+++  LLEE RDH+Y+
Sbjct:   481 VSVEADVFISGFDRDGKGHPSFASLVMGHRLYQSASAKTFRPDRKQIAMLLEEIRDHMYE 540

Query:   539 ANHTWVTSIRKHLRRSLLDGLTEASTKSKSLSVLSHPVPECSCLKYDPTESYVNASSPSH 598
             ANHTW+TS+RK L+RS+L+GL E+S +SK+ S LSHPVPECSC+    T    NA++   
Sbjct:   541 ANHTWITSVRKLLKRSILEGLMESSKRSKAFSFLSHPVPECSCITR--THPVSNATN--- 595

Query:   599 SQLQATLGAVHHCPAWMDSQIISRXXXXXXXXXXXXXXX---XXXGLFFRH--NGSNHES 653
                   LG  H CP W+D  +  R                     GLFF H  +G N+  
Sbjct:   596 ------LGVTHRCPQWVDGAVSERLKEYKNAEKEEDLDEEDLSSSGLFFGHKESGGNNNG 649

Query:   654 GGGEIN 659
                 +N
Sbjct:   650 NNETVN 655




GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0008150 "biological_process" evidence=ND
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0009086 "methionine biosynthetic process" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM
TAIR|locus:2079404 EDA30 "embryo sac development arrest 30" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010657 AT1G04910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009467 AT1G22460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008935 AT1G11990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174754 AT5G64600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121793 RHS17 "root hair specific 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143181 AT5G15740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014869 AT1G14020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pm.C_1650007
hypothetical protein (679 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query675
cd11299290 cd11299, O-FucT_plant, GDP-fucose protein O-fucosy 4e-91
pfam10250315 pfam10250, O-FucT, GDP-fucose protein O-fucosyltra 7e-89
cd11299290 cd11299, O-FucT_plant, GDP-fucose protein O-fucosy 2e-10
>gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily Back     alignment and domain information
 Score =  284 bits (729), Expect = 4e-91
 Identities = 110/296 (37%), Positives = 154/296 (52%), Gaps = 48/296 (16%)

Query: 103 FIFVRIQGGFHEIRNSISDVVVVARLLNATLVIPEIQSTTSSKGISSQFKSFAYLYNEEQ 162
           ++ V   GG ++ R+ I D V VARLLNATLV+PE+        +      F  +Y+ + 
Sbjct: 1   YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDK----NSVWGDSSKFGDIYDVDH 56

Query: 163 FMAALAKDINIVKTLPKNLKGARRKKKIPSFRVSYSASPYFYLHHVLPVLIKHSVVELVV 222
           F+ +L  D+ +VK LP+ L  A +K +I   RV   +SP +YL  VLP+L KH V+  + 
Sbjct: 57  FIKSLKDDVRVVKKLPEEL--ASKKPEITVKRVPSRSSPSYYLEEVLPLLKKHGVI-RLA 113

Query: 223 SDGGCLQASLPPHLEEYQRLRCRVAFHALRFRQEVQELATRILRRLRAPGRPFIAFDPGM 282
                L   L P   E QRLRCRV FHALRF  E++EL  +++ RLR  G PF+A     
Sbjct: 114 PFDSRLANDLLP--PEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGGPFLALHLRF 171

Query: 283 IRDALAYHGCAELFQDVHTELIQHKRAWMIKRRIVRGKLSVNSMELRLNGTCPLMPEEVG 342
            +D LA+ GC                                       G CPL PEEVG
Sbjct: 172 EKDMLAFSGC---------------------------------------GKCPLTPEEVG 192

Query: 343 ILLRAYGYSWDTIIYVSGGEVFGGQRTLIPLHAMFANVVDRTSLSTAWELTRIYGR 398
           +LLRA G+   T IY++ GE++GG+R L PL ++F N+  + +L+TA EL    G 
Sbjct: 193 LLLRALGFPRSTRIYLAAGEIYGGERRLDPLRSIFPNLYTKETLATAEELAPFSGH 248


Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290

>gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase Back     alignment and domain information
>gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 675
PF10250351 O-FucT: GDP-fucose protein O-fucosyltransferase; I 100.0
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats Back     alignment and domain information
Probab=100.00  E-value=3.4e-52  Score=427.32  Aligned_cols=304  Identities=32%  Similarity=0.480  Sum_probs=203.5

Q ss_pred             EcCchhhhHHHHHHHHHHHhHhcceEeccccCcccccCCCCC--CCCCCCcccChHHHHHHccCCcEEeccCchhhhhhc
Q 039928          108 IQGGFHEIRNSISDVVVVARLLNATLVIPEIQSTTSSKGISS--QFKSFAYLYNEEQFMAALAKDINIVKTLPKNLKGAR  185 (675)
Q Consensus       108 anGGLNQqR~~IcDAVaVARiLNATLVIP~Ld~ss~~~~d~s--d~S~F~DIFDvdhFI~sLk~DVrIVk~LP~~l~~~~  185 (675)
                      +.||+|+||.++++||++|++||+|||||.+..... |.+.+  ..-.|+++||+++|+++++++|.+++.+|..+....
T Consensus         6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~-~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~   84 (351)
T PF10250_consen    6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYH-WKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVF   84 (351)
T ss_dssp             -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESS-SS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCcccccc-ccccccccccChhhhccHHHHHHHhhCceehheeccchhcccc
Confidence            789999999999999999999999999999999864 44432  111399999999999999999999999987766543


Q ss_pred             cc---------------------------CCCCcccccc-CCChhhHhhhcccccccc------eEEEEeecCCcccccC
Q 039928          186 RK---------------------------KKIPSFRVSY-SASPYFYLHHVLPVLIKH------SVVELVVSDGGCLQAS  231 (675)
Q Consensus       186 ~~---------------------------~~~~~~rvp~-~ss~~yY~~~VLP~Lkk~------~VI~l~~~d~rLa~~~  231 (675)
                      ..                           .....+.+.. ++.+.+|+++++|++.++      +|+.|..+...+..+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  164 (351)
T PF10250_consen   85 RLQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNY  164 (351)
T ss_dssp             -EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--G
T ss_pred             chhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhcc
Confidence            21                           1122233344 788899999999999987      9999999999887776


Q ss_pred             CCCChhHhhhhhhhhcccceecchHHHHHHHHHHHHHhcCCCCeEEecccchhhhhhhcCCccccchhHHHHHHHHHHHH
Q 039928          232 LPPHLEEYQRLRCRVAFHALRFRQEVQELATRILRRLRAPGRPFIAFDPGMIRDALAYHGCAELFQDVHTELIQHKRAWM  311 (675)
Q Consensus       232 LP~~~~eiQrLRCRvnfhALrF~p~IeeLg~~LV~RLR~~g~pyIALHLRfE~DMLAfSgC~~~~~~~~~el~~~rr~~~  311 (675)
                      +++   ++||        +|+|+++|+++|+++|++|+..+++|||+|||+|+||  +++|.+..  +...+..+|. + 
T Consensus       165 ~~~---~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~--~~~~~~~~~~-~-  227 (351)
T PF10250_consen  165 LDR---DLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG--ERHLLASPRC-W-  227 (351)
T ss_dssp             GGG---GGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T------TTTHHH-H-
T ss_pred             cCc---cceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC--chHHHHHhHh-h-
Confidence            554   6777        9999999999999999999955679999999999999  99999844  2233333332 1 


Q ss_pred             hhhhhccCccccChhhhhcCCCCCCCHHHHHHHHHHcCCCCceeEEEecccccCcccchhhHHHhccccccccCCCCHHH
Q 039928          312 IKRRIVRGKLSVNSMELRLNGTCPLMPEEVGILLRAYGYSWDTIIYVSGGEVFGGQRTLIPLHAMFANVVDRTSLSTAWE  391 (675)
Q Consensus       312 ~k~~~~k~~~~i~s~~~R~~G~CPLTPeEVgl~LrALGf~~~T~IYlAaGeiYGG~~~L~pL~~~FPnl~tK~tLat~eE  391 (675)
                             +++.+++...|..|.||++|++++.++++||+.+.|.||||++++|||.+.|.+|+++||++++|+++.+.+|
T Consensus       228 -------~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  300 (351)
T PF10250_consen  228 -------GKKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEE  300 (351)
T ss_dssp             --------GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--
T ss_pred             -------ccccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHH
Confidence                   3346677788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhccccccCCCCCCCchhHHHhhhhhcccCCCCCCCCCCCCCCCCccccccccccccCCCCCchhHHHHhhhhhhhh
Q 039928          392 LTRIYGREANLIDPKTPLSVEEEEKHESWKNVGPRPRPLPPPPARPKSYNIEGWWGWVAESDNEPESTVMELRTNAHKLL  471 (675)
Q Consensus       392 L~pf~g~~~~~~~~~~p~~~~~~~~~~~w~~~~~rp~plppp~~rp~~~~~eg~~~w~~e~~~e~~~s~~~~r~~~h~l~  471 (675)
                      +++|.+                                                                        .+
T Consensus       301 ~~~~~~------------------------------------------------------------------------~~  308 (351)
T PF10250_consen  301 LEPLND------------------------------------------------------------------------DQ  308 (351)
T ss_dssp             S-----------------------------------------------------------------------------S-
T ss_pred             hhhccc------------------------------------------------------------------------cc
Confidence            999862                                                                        35


Q ss_pred             hhhhheeeeeccceeeeccCCCCCCCCChhhhhhccccccCCC
Q 039928          472 WEAIDYMVCVEADVFIPGFDRDGKGHPNFASLVMGHRLYQSAS  514 (675)
Q Consensus       472 ~AALDYiV~l~SDvFvpt~~~~G~g~~Nma~~v~GHR~Y~g~~  514 (675)
                      +|+|||+||+.||+||.+.   ||   .|+..|+++|.|.|..
T Consensus       309 ~a~vD~~i~~~s~~Figt~---~S---tfs~~i~~~R~~~g~~  345 (351)
T PF10250_consen  309 LAMVDQEICSRSDVFIGTC---GS---TFSSNIARERHYRGKP  345 (351)
T ss_dssp             -HHHHHHHHHHSSEEEE-T---T----HHHHHHHHHHHHSSSS
T ss_pred             hhHHHHHHHhcCCEEEecC---cc---hhHHHhhcccCcCCCC
Confidence            6999999999999999865   43   7999999999999964



Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query675
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 55/433 (12%), Positives = 119/433 (27%), Gaps = 145/433 (33%)

Query: 1   MKGEGKMMFKSKMKWVGLIGLILSTFSLLVHIFLARFTEDGVSEYQSSVTIFSWRPIFEN 60
           + G GK           +   +  ++ +   +      +           IF W  +   
Sbjct: 158 VLGSGK--------TW-VALDVCLSYKVQCKM------DFK---------IF-WLNL--- 189

Query: 61  AEFSKTSPLYRRLWGPVRRLESLHPDASPRGYYADPSYRANGFIFVRIQGGFHEIRNSIS 120
              +    +       +  L+ L        Y  DP++ +       I+   H I+  + 
Sbjct: 190 KNCNSPETV-------LEMLQKLL-------YQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 121 DVVVVARLLNATLVIPEIQS---------------TTSSKGISSQFKSFAY--------- 156
            ++      N  LV+  +Q+               TT  K ++    +            
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 157 -LYNEEQFMAALAKDINI-VKTLP-------------------------KNLKGARRKKK 189
                ++  + L K ++   + LP                          N K     K 
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 190 IPSFRVSYSA-SP------YFYL----------HHVLPVL---IKHSVVELVVSDGGCLQ 229
                 S +   P      +  L            +L ++   +  S V +VV+     +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LHK 413

Query: 230 ASLPPHLEEYQRLRCRVAFHAL--RFRQEVQELAT---RILRRLRAPGRPFIAFDPGMIR 284
            SL   +E+ Q     ++  ++    + +++        I+     P + F + D     
Sbjct: 414 YSL---VEK-QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP-KTFDSDDLIPPY 468

Query: 285 DA------LAYHGCAELFQDVHTELIQHKRAWMIKRRIVRGKLSVNSMELRLNGTCPLMP 338
                   + +H    L    H E +   R   +  R +  K       +R + T     
Sbjct: 469 LDQYFYSHIGHH----LKNIEHPERMTLFRMVFLDFRFLEQK-------IRHDSTAWNAS 517

Query: 339 EEVGILL---RAY 348
             +   L   + Y
Sbjct: 518 GSILNTLQQLKFY 530


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query675
4ap5_A408 GDP-fucose protein O-fucosyltransferase 2; GT-B, G 99.15
3zy2_A362 Putative GDP-fucose protein O-fucosyltransferase; 98.29
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* Back     alignment and structure
Probab=99.15  E-value=5.4e-10  Score=118.13  Aligned_cols=65  Identities=12%  Similarity=0.210  Sum_probs=48.2

Q ss_pred             CCCcEEEEEEc-C-chhhhHHHHHHHHHHHhHhcce----EeccccCcccccCCCC--CCCCCCCcccChHHH
Q 039928           99 RANGFIFVRIQ-G-GFHEIRNSISDVVVVARLLNAT----LVIPEIQSTTSSKGIS--SQFKSFAYLYNEEQF  163 (675)
Q Consensus        99 ~snGYL~V~an-G-GLNQqR~~IcDAVaVARiLNAT----LVIP~Ld~ss~~~~d~--sd~S~F~DIFDvdhF  163 (675)
                      ..++||+-..| | |+|.||...-.|.++|+.||-|    ||||-...-.-|....  +..-.|++.||++++
T Consensus        20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L   92 (408)
T 4ap5_A           20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL   92 (408)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH
T ss_pred             cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH
Confidence            56899999875 4 8999999999999999999999    9999664211122221  111249999999864



>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00